Query 020917
Match_columns 320
No_of_seqs 135 out of 1918
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 10:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_A U1-A; protein-RNA compl 100.0 1.1E-33 3.6E-38 254.1 26.8 242 46-301 6-282 (282)
2 4f02_A Polyadenylate-binding p 100.0 4.1E-34 1.4E-38 246.7 18.8 163 47-302 13-181 (213)
3 2adc_A Polypyrimidine tract-bi 100.0 2.5E-33 8.5E-38 244.5 22.5 191 47-302 32-228 (229)
4 3md3_A Nuclear and cytoplasmic 100.0 1E-32 3.5E-37 227.5 19.3 159 50-301 1-166 (166)
5 2g4b_A Splicing factor U2AF 65 100.0 8.2E-33 2.8E-37 229.8 17.8 156 48-299 3-171 (172)
6 2yh0_A Splicing factor U2AF 65 100.0 1.8E-32 6.1E-37 232.9 20.2 179 48-302 3-194 (198)
7 3tyt_A Heterogeneous nuclear r 100.0 1.2E-32 4.2E-37 236.0 18.8 194 47-299 2-204 (205)
8 3nmr_A Cugbp ELAV-like family 100.0 3.4E-32 1.2E-36 226.4 20.0 165 48-300 2-175 (175)
9 1b7f_A Protein (SXL-lethal pro 100.0 7.1E-32 2.4E-36 223.1 21.1 159 48-299 2-168 (168)
10 1fxl_A Paraneoplastic encephal 100.0 7.1E-32 2.4E-36 222.6 20.4 158 49-299 2-167 (167)
11 1fje_B Nucleolin RBD12, protei 100.0 9.6E-33 3.3E-37 230.3 15.0 162 46-302 10-174 (175)
12 1qm9_A Polypyrimidine tract-bi 100.0 6.7E-32 2.3E-36 229.8 19.6 189 49-302 3-197 (198)
13 2qfj_A FBP-interacting repress 100.0 1.1E-31 3.9E-36 231.0 20.6 172 47-302 26-205 (216)
14 1l3k_A Heterogeneous nuclear r 100.0 1.2E-31 4.1E-36 227.4 20.1 170 47-307 11-188 (196)
15 2cjk_A Nuclear polyadenylated 100.0 3.3E-31 1.1E-35 219.0 14.1 153 48-302 2-166 (167)
16 3sde_A Paraspeckle component 1 100.0 2.2E-29 7.7E-34 223.7 20.5 156 47-302 20-179 (261)
17 3smz_A Protein raver-1, ribonu 100.0 2.5E-29 8.6E-34 225.7 20.6 164 48-303 94-265 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-29 5.4E-34 227.9 18.1 166 48-302 116-291 (292)
19 3smz_A Protein raver-1, ribonu 100.0 6E-29 2.1E-33 223.2 20.8 149 48-302 21-175 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 1.1E-28 3.6E-33 222.5 16.7 154 46-302 38-197 (292)
21 2i2y_A Fusion protein consists 99.9 1.5E-23 5.1E-28 170.6 12.7 136 86-302 12-148 (150)
22 2kn4_A Immunoglobulin G-bindin 99.9 1.8E-22 6E-27 165.5 15.0 78 222-302 69-150 (158)
23 4fxv_A ELAV-like protein 1; RN 99.8 6.6E-21 2.3E-25 143.9 10.9 77 222-301 18-98 (99)
24 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.9E-20 1.7E-24 140.0 13.7 89 221-312 13-103 (103)
25 3r27_A HnRNP L, heterogeneous 99.8 1.9E-20 6.6E-25 140.4 10.5 79 219-302 17-97 (100)
26 4f25_A Polyadenylate-binding p 99.8 1.7E-20 5.8E-25 145.6 10.1 77 49-128 5-83 (115)
27 2cq1_A PTB-like protein L; RRM 99.8 2.1E-19 7.2E-24 135.8 14.2 83 220-307 12-96 (101)
28 1sjq_A Polypyrimidine tract-bi 99.8 3.4E-20 1.1E-24 140.5 9.5 79 221-304 14-94 (105)
29 2dnz_A Probable RNA-binding pr 99.8 1.7E-19 5.8E-24 134.8 13.1 82 222-306 4-89 (95)
30 1x4a_A Splicing factor, argini 99.8 3.4E-19 1.2E-23 136.7 14.7 80 221-303 20-100 (109)
31 4f25_A Polyadenylate-binding p 99.8 8.5E-20 2.9E-24 141.6 11.3 77 223-302 5-83 (115)
32 1wex_A Hypothetical protein (r 99.8 1.9E-19 6.5E-24 136.9 13.0 82 220-306 12-95 (104)
33 2d9p_A Polyadenylate-binding p 99.8 2.9E-19 9.8E-24 135.7 13.8 86 221-309 13-100 (103)
34 3s8s_A Histone-lysine N-methyl 99.8 1.4E-19 4.7E-24 139.2 11.9 79 221-302 4-86 (110)
35 2cq3_A RNA-binding protein 9; 99.8 4.9E-19 1.7E-23 134.4 14.8 84 220-306 12-97 (103)
36 2dnq_A RNA-binding protein 4B; 99.8 2.2E-19 7.5E-24 132.9 12.3 79 221-306 6-84 (90)
37 1x5u_A Splicing factor 3B subu 99.8 3.2E-19 1.1E-23 135.9 13.1 88 221-311 13-104 (105)
38 2cpf_A RNA binding motif prote 99.8 2.8E-19 9.6E-24 134.4 12.2 82 222-306 4-92 (98)
39 2cpz_A CUG triplet repeat RNA- 99.8 6.5E-19 2.2E-23 136.5 14.4 83 219-304 21-107 (115)
40 2ad9_A Polypyrimidine tract-bi 99.8 2.3E-19 7.8E-24 139.2 11.7 85 219-308 27-113 (119)
41 1x5s_A Cold-inducible RNA-bind 99.8 2E-19 6.7E-24 136.3 11.1 87 222-311 11-101 (102)
42 1x4d_A Matrin 3; structural ge 99.8 1.4E-19 4.9E-24 136.8 9.9 76 222-302 14-92 (102)
43 2lxi_A RNA-binding protein 10; 99.8 2.9E-20 1E-24 138.1 6.0 78 223-303 1-84 (91)
44 2lkz_A RNA-binding protein 5; 99.8 5.9E-20 2E-24 137.3 7.4 77 223-302 9-95 (95)
45 2dgs_A DAZ-associated protein 99.8 6.3E-19 2.2E-23 132.8 13.1 82 221-306 8-93 (99)
46 1x4g_A Nucleolysin TIAR; struc 99.8 3.8E-19 1.3E-23 136.5 11.4 86 221-311 23-108 (109)
47 2cpj_A Non-POU domain-containi 99.8 9.4E-19 3.2E-23 131.9 13.4 79 220-303 12-90 (99)
48 2dnh_A Bruno-like 5, RNA bindi 99.8 1.4E-18 4.9E-23 132.2 14.5 83 221-303 13-98 (105)
49 1why_A Hypothetical protein ri 99.8 7.7E-19 2.6E-23 131.9 12.5 78 220-302 14-93 (97)
50 2cq0_A Eukaryotic translation 99.8 1.1E-18 3.9E-23 132.4 13.5 80 220-302 12-95 (103)
51 2cph_A RNA binding motif prote 99.8 9.6E-19 3.3E-23 133.6 13.1 82 221-305 13-100 (107)
52 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.1E-19 1.4E-23 129.9 10.6 76 222-300 6-85 (85)
53 1u6f_A Tcubp1, RNA-binding pro 99.8 2E-18 7E-23 138.2 15.6 85 219-306 38-126 (139)
54 2e5h_A Zinc finger CCHC-type a 99.8 6.8E-19 2.3E-23 131.2 11.9 77 221-300 14-94 (94)
55 2do4_A Squamous cell carcinoma 99.8 1.3E-18 4.3E-23 131.4 13.5 79 221-302 15-96 (100)
56 1x5t_A Splicing factor 3B subu 99.8 3.9E-19 1.3E-23 133.1 10.5 80 222-304 4-88 (96)
57 2wbr_A GW182, gawky, LD47780P; 99.8 2.7E-19 9.2E-24 129.7 9.2 73 223-300 7-79 (89)
58 2lea_A Serine/arginine-rich sp 99.8 8.1E-20 2.8E-24 145.8 7.1 78 222-302 46-127 (135)
59 2cqc_A Arginine/serine-rich sp 99.8 6.5E-19 2.2E-23 131.5 11.6 79 220-301 12-94 (95)
60 1whw_A Hypothetical protein ri 99.8 8.5E-19 2.9E-23 132.0 12.2 81 221-304 6-90 (99)
61 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.7E-19 1.6E-23 130.1 10.4 78 222-302 5-86 (87)
62 2khc_A Testis-specific RNP-typ 99.8 1.5E-18 5.2E-23 135.0 13.9 79 219-300 36-118 (118)
63 2dnm_A SRP46 splicing factor; 99.8 7.3E-19 2.5E-23 133.4 11.6 78 222-302 12-93 (103)
64 2dgo_A Cytotoxic granule-assoc 99.8 2.6E-18 9E-23 133.0 14.8 83 221-306 13-99 (115)
65 2cpd_A Apobec-1 stimulating pr 99.8 1.8E-18 6.3E-23 130.3 13.5 78 220-304 12-91 (99)
66 2dgt_A RNA-binding protein 30; 99.8 9.7E-19 3.3E-23 130.0 11.8 77 221-304 8-84 (92)
67 2x1f_A MRNA 3'-END-processing 99.8 5.2E-19 1.8E-23 132.5 10.4 78 222-302 1-82 (96)
68 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.5E-19 2.2E-23 133.4 11.0 81 222-305 11-95 (102)
69 4a8x_A RNA-binding protein wit 99.8 7.7E-19 2.6E-23 129.2 11.0 78 222-302 3-85 (88)
70 2dgv_A HnRNP M, heterogeneous 99.8 1E-18 3.5E-23 129.7 11.4 79 222-303 7-87 (92)
71 2fy1_A RNA-binding motif prote 99.8 1.2E-18 3.9E-23 135.4 12.2 80 222-304 6-88 (116)
72 1x4h_A RNA-binding protein 28; 99.8 1.9E-18 6.6E-23 132.8 13.3 83 221-306 13-105 (111)
73 2do0_A HnRNP M, heterogeneous 99.8 4.7E-18 1.6E-22 131.3 15.4 79 221-302 13-94 (114)
74 3md1_A Nuclear and cytoplasmic 99.8 9.8E-19 3.3E-23 127.2 10.8 76 224-302 2-81 (83)
75 2dgx_A KIAA0430 protein; RRM d 99.8 8.1E-19 2.8E-23 131.5 10.6 78 222-302 8-90 (96)
76 2dgp_A Bruno-like 4, RNA bindi 99.8 8.9E-19 3E-23 133.6 11.0 81 221-304 11-98 (106)
77 2a3j_A U1 small nuclear ribonu 99.8 5.8E-19 2E-23 139.0 10.2 79 221-302 27-110 (127)
78 1wi8_A EIF-4B, eukaryotic tran 99.8 1.9E-18 6.6E-23 131.4 12.7 80 222-306 14-98 (104)
79 2dng_A Eukaryotic translation 99.8 3E-18 1E-22 130.0 13.6 78 222-304 14-95 (103)
80 1x4f_A Matrin 3; structural ge 99.8 1.8E-18 6.1E-23 132.7 12.4 78 220-302 22-102 (112)
81 2e5j_A Methenyltetrahydrofolat 99.8 1.3E-18 4.6E-23 130.6 11.5 78 221-302 17-94 (97)
82 2la6_A RNA-binding protein FUS 99.8 1.5E-18 5.1E-23 130.8 11.6 76 222-300 12-99 (99)
83 2cpi_A CCR4-NOT transcription 99.8 1.5E-18 5.2E-23 133.6 11.7 81 222-305 14-104 (111)
84 2cqd_A RNA-binding region cont 99.8 3.7E-18 1.3E-22 132.4 14.0 85 220-308 14-102 (116)
85 2err_A Ataxin-2-binding protei 99.8 9.2E-19 3.1E-23 134.4 10.3 80 220-302 26-107 (109)
86 2ytc_A PRE-mRNA-splicing facto 99.8 1.5E-18 5.3E-23 126.8 11.0 75 221-300 10-85 (85)
87 2dnp_A RNA-binding protein 14; 99.8 1.5E-18 5.2E-23 128.4 11.0 75 221-302 7-81 (90)
88 2cpe_A RNA-binding protein EWS 99.8 2E-18 7E-23 133.2 12.2 81 221-304 13-105 (113)
89 2jrs_A RNA-binding protein 39; 99.8 1.8E-18 6E-23 132.6 11.7 80 220-302 23-106 (108)
90 2dhg_A TRNA selenocysteine ass 99.8 1.8E-18 6E-23 131.5 11.4 84 222-308 8-96 (104)
91 2ywk_A Putative RNA-binding pr 99.8 1.2E-18 4.2E-23 130.1 10.3 77 222-301 15-94 (95)
92 2dgu_A Heterogeneous nuclear r 99.8 2.5E-18 8.6E-23 130.5 12.0 79 221-306 9-87 (103)
93 2jvo_A Nucleolar protein 3; nu 99.8 1.3E-18 4.4E-23 133.3 10.3 77 219-302 27-103 (108)
94 2la4_A Nuclear and cytoplasmic 99.8 1E-18 3.4E-23 132.2 9.3 76 222-302 26-101 (101)
95 2cpx_A Hypothetical protein FL 99.8 1.9E-18 6.4E-23 133.8 11.1 84 220-306 22-109 (115)
96 2jvr_A Nucleolar protein 3; RN 99.8 6.4E-19 2.2E-23 135.4 7.9 78 222-302 27-105 (111)
97 2fc9_A NCL protein; structure 99.8 2.2E-18 7.4E-23 130.3 10.7 78 221-304 13-93 (101)
98 2div_A TRNA selenocysteine ass 99.8 2.2E-18 7.5E-23 129.7 10.7 78 222-302 8-94 (99)
99 2xnq_A Nuclear polyadenylated 99.8 2.8E-18 9.6E-23 128.9 10.8 76 220-302 19-95 (97)
100 1x5p_A Negative elongation fac 99.8 1.1E-17 3.6E-22 125.6 13.9 80 221-307 13-92 (97)
101 1wf1_A RNA-binding protein RAL 99.8 3.5E-18 1.2E-22 131.3 11.5 80 222-308 26-106 (110)
102 3ulh_A THO complex subunit 4; 99.8 3.6E-18 1.2E-22 130.5 11.4 78 221-301 27-107 (107)
103 2kvi_A Nuclear polyadenylated 99.8 1.7E-18 6E-23 129.7 9.4 78 221-305 8-86 (96)
104 2hvz_A Splicing factor, argini 99.8 1.4E-18 4.7E-23 131.4 8.7 76 224-303 1-76 (101)
105 2cqp_A RNA-binding protein 12; 99.8 2.3E-18 7.7E-23 129.4 9.8 79 221-302 13-95 (98)
106 1p27_B RNA-binding protein 8A; 99.8 2.5E-18 8.7E-23 131.1 10.1 78 222-302 22-103 (106)
107 2cqh_A IGF-II mRNA-binding pro 99.8 3E-18 1E-22 127.6 10.2 75 222-302 7-83 (93)
108 2kxn_B Transformer-2 protein h 99.8 2.6E-18 8.9E-23 135.9 10.3 81 219-302 42-126 (129)
109 4fxv_A ELAV-like protein 1; RN 99.8 2.4E-18 8.1E-23 129.8 9.5 78 47-127 17-98 (99)
110 3ex7_B RNA-binding protein 8A; 99.8 2.6E-18 9E-23 135.2 10.1 82 222-306 21-106 (126)
111 3p5t_L Cleavage and polyadenyl 99.8 7.1E-19 2.4E-23 130.2 6.4 76 224-302 2-83 (90)
112 2diu_A KIAA0430 protein; struc 99.8 3.3E-18 1.1E-22 125.2 9.7 73 221-302 6-84 (96)
113 2dh8_A DAZ-associated protein 99.8 4.9E-18 1.7E-22 129.3 11.0 83 220-306 13-99 (105)
114 1oo0_B CG8781-PA, drosophila Y 99.8 3.6E-18 1.2E-22 131.2 10.0 78 222-302 25-106 (110)
115 1nu4_A U1A RNA binding domain; 99.8 1.9E-18 6.6E-23 129.5 8.3 79 221-302 6-89 (97)
116 1sjr_A Polypyrimidine tract-bi 99.8 3.1E-18 1.1E-22 139.5 10.0 79 223-302 46-124 (164)
117 2fc8_A NCL protein; structure 99.8 7.7E-18 2.6E-22 127.5 11.6 78 221-304 13-94 (102)
118 3lqv_A PRE-mRNA branch site pr 99.8 5.7E-18 2E-22 131.1 11.0 78 222-302 7-85 (115)
119 1x4e_A RNA binding motif, sing 99.8 9.8E-19 3.4E-23 127.9 6.2 77 222-301 4-84 (85)
120 1whx_A Hypothetical protein ri 99.8 3.9E-18 1.3E-22 131.4 9.8 75 223-302 10-84 (111)
121 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4.7E-18 1.6E-22 140.2 10.9 80 222-304 71-154 (165)
122 3ucg_A Polyadenylate-binding p 99.7 8E-18 2.7E-22 124.0 10.3 76 223-302 6-85 (89)
123 1x5o_A RNA binding motif, sing 99.7 4E-17 1.4E-21 126.1 14.7 82 221-302 23-112 (114)
124 2ek1_A RNA-binding protein 12; 99.7 2.5E-18 8.4E-23 128.4 7.4 77 222-301 14-94 (95)
125 3r27_A HnRNP L, heterogeneous 99.7 9E-18 3.1E-22 125.9 10.3 75 47-128 19-97 (100)
126 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.7E-17 5.7E-22 135.6 12.8 81 221-304 37-121 (156)
127 2ad9_A Polypyrimidine tract-bi 99.7 9.7E-18 3.3E-22 130.0 10.7 80 46-130 28-109 (119)
128 2cqg_A TDP-43, TAR DNA-binding 99.7 3.5E-17 1.2E-21 124.1 13.7 82 221-307 13-98 (103)
129 3zzy_A Polypyrimidine tract-bi 99.7 1.1E-17 3.8E-22 131.4 10.8 77 224-302 29-106 (130)
130 1p1t_A Cleavage stimulation fa 99.7 6.7E-18 2.3E-22 128.2 9.2 79 222-303 7-89 (104)
131 1s79_A Lupus LA protein; RRM, 99.7 5.9E-18 2E-22 128.5 8.9 77 222-302 10-89 (103)
132 2kt5_A RNA and export factor-b 99.7 6.4E-17 2.2E-21 126.9 15.1 79 221-302 33-114 (124)
133 1x4c_A Splicing factor, argini 99.7 3.6E-17 1.2E-21 125.2 13.3 82 222-306 14-97 (108)
134 1wez_A HnRNP H', FTP-3, hetero 99.7 2.6E-17 8.9E-22 124.7 12.3 79 222-305 14-95 (102)
135 1x4b_A Heterogeneous nuclear r 99.7 1.1E-17 3.9E-22 129.6 10.6 82 222-307 26-111 (116)
136 2e44_A Insulin-like growth fac 99.7 1.5E-17 5.1E-22 124.4 10.9 78 222-302 14-92 (96)
137 3ns6_A Eukaryotic translation 99.7 3.5E-18 1.2E-22 129.1 7.4 79 222-302 5-93 (100)
138 1sjq_A Polypyrimidine tract-bi 99.7 7.5E-18 2.6E-22 127.5 9.2 77 47-130 14-94 (105)
139 2cq4_A RNA binding motif prote 99.7 9.4E-18 3.2E-22 129.7 9.9 77 222-302 24-104 (114)
140 2err_A Ataxin-2-binding protei 99.7 1.1E-17 3.6E-22 128.5 9.8 80 46-128 26-107 (109)
141 2nlw_A Eukaryotic translation 99.7 8.9E-18 3E-22 128.0 9.2 78 222-302 14-100 (105)
142 2j76_E EIF-4B, EIF4B, eukaryot 99.7 3E-18 1E-22 129.4 6.5 76 222-302 18-98 (100)
143 2cq2_A Hypothetical protein LO 99.7 5.3E-18 1.8E-22 130.2 7.8 77 221-302 23-106 (114)
144 2rs2_A Musashi-1, RNA-binding 99.7 1.6E-17 5.3E-22 127.5 10.4 80 219-302 21-104 (109)
145 3lqv_A PRE-mRNA branch site pr 99.7 4.6E-18 1.6E-22 131.6 7.5 79 47-128 6-85 (115)
146 2m2b_A RNA-binding protein 10; 99.7 1.4E-17 4.7E-22 132.1 10.4 78 221-302 21-108 (131)
147 2xnq_A Nuclear polyadenylated 99.7 1.9E-17 6.5E-22 124.3 10.5 75 47-128 20-95 (97)
148 2dgw_A Probable RNA-binding pr 99.7 3.6E-17 1.2E-21 121.1 11.9 76 222-302 9-87 (91)
149 2cq1_A PTB-like protein L; RRM 99.7 3.3E-17 1.1E-21 123.7 11.8 78 45-129 11-92 (101)
150 3s7r_A Heterogeneous nuclear r 99.7 2.7E-17 9.4E-22 120.7 11.1 75 221-299 9-87 (87)
151 3n9u_C Cleavage and polyadenyl 99.7 1.6E-17 5.5E-22 135.6 10.5 78 222-302 54-137 (156)
152 1fjc_A Nucleolin RBD2, protein 99.7 1.1E-17 3.7E-22 125.2 8.7 80 221-304 14-93 (96)
153 2cpd_A Apobec-1 stimulating pr 99.7 4.9E-17 1.7E-21 122.4 12.4 80 46-130 12-91 (99)
154 2kxn_B Transformer-2 protein h 99.7 9.1E-18 3.1E-22 132.8 8.7 81 45-128 42-126 (129)
155 2e5i_A Heterogeneous nuclear r 99.7 4.1E-17 1.4E-21 127.5 12.2 78 222-302 22-102 (124)
156 2hvz_A Splicing factor, argini 99.7 1.5E-17 5E-22 125.7 9.3 76 50-129 1-76 (101)
157 1wex_A Hypothetical protein (r 99.7 4.5E-17 1.5E-21 123.7 11.9 78 46-130 12-93 (104)
158 2e5j_A Methenyltetrahydrofolat 99.7 7.3E-17 2.5E-21 121.0 12.9 78 47-128 17-94 (97)
159 2lcw_A RNA-binding protein FUS 99.6 3.4E-19 1.2E-23 138.3 0.0 87 221-310 5-103 (116)
160 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.9E-17 9.9E-22 131.4 11.1 77 220-299 60-140 (140)
161 2jwn_A Embryonic polyadenylate 99.7 2.8E-17 9.6E-22 128.9 10.8 77 222-302 35-115 (124)
162 1x4d_A Matrin 3; structural ge 99.7 1.9E-17 6.6E-22 125.1 9.4 79 46-131 12-95 (102)
163 1wg1_A KIAA1579 protein, homol 99.7 1.9E-17 6.3E-22 122.0 9.1 75 222-302 4-78 (88)
164 2cqi_A Nucleolysin TIAR; RNA r 99.7 5.9E-17 2E-21 122.8 12.1 82 46-130 12-95 (103)
165 3tyt_A Heterogeneous nuclear r 99.7 2.1E-17 7.3E-22 141.1 10.7 77 222-302 3-80 (205)
166 2krb_A Eukaryotic translation 99.7 6.8E-18 2.3E-22 122.3 6.5 72 223-297 1-81 (81)
167 2lkz_A RNA-binding protein 5; 99.7 1.4E-17 4.9E-22 124.3 8.4 78 47-127 7-94 (95)
168 2diu_A KIAA0430 protein; struc 99.7 4E-17 1.4E-21 119.4 10.5 77 47-132 6-88 (96)
169 3s8s_A Histone-lysine N-methyl 99.7 1.6E-17 5.5E-22 127.6 8.8 81 47-130 4-88 (110)
170 2jvo_A Nucleolar protein 3; nu 99.7 2.5E-17 8.5E-22 126.2 9.7 77 47-130 29-105 (108)
171 1sjr_A Polypyrimidine tract-bi 99.7 4.2E-17 1.5E-21 132.8 11.3 83 47-130 44-126 (164)
172 2khc_A Testis-specific RNP-typ 99.7 9.8E-17 3.4E-21 124.6 12.9 79 45-126 36-118 (118)
173 2dis_A Unnamed protein product 99.7 3.8E-17 1.3E-21 125.1 10.2 80 222-304 7-94 (109)
174 3egn_A RNA-binding protein 40; 99.7 2.6E-17 9.1E-22 132.4 9.7 80 220-302 42-130 (143)
175 1x4a_A Splicing factor, argini 99.7 8.8E-17 3E-21 123.2 12.1 82 46-130 19-101 (109)
176 1u6f_A Tcubp1, RNA-binding pro 99.7 3.2E-16 1.1E-20 125.3 15.8 83 45-130 38-124 (139)
177 2ki2_A SS-DNA binding protein 99.7 4.9E-18 1.7E-22 125.5 4.5 75 224-302 2-80 (90)
178 2cq3_A RNA-binding protein 9; 99.7 1.1E-16 3.9E-21 121.2 12.2 83 45-130 11-95 (103)
179 1fj7_A Nucleolin RBD1, protein 99.7 7.6E-18 2.6E-22 127.3 5.6 79 222-305 16-98 (101)
180 2wbr_A GW182, gawky, LD47780P; 99.7 5.4E-17 1.8E-21 117.7 9.7 72 48-126 6-79 (89)
181 2xs2_A Deleted in azoospermia- 99.7 1.4E-17 4.7E-22 126.1 6.9 92 222-318 8-102 (102)
182 3n9u_C Cleavage and polyadenyl 99.7 2.1E-17 7.1E-22 135.0 8.5 80 47-129 53-138 (156)
183 2mss_A Protein (musashi1); RNA 99.7 1.4E-17 4.7E-22 118.7 6.6 71 225-299 1-75 (75)
184 1x4f_A Matrin 3; structural ge 99.7 4.6E-17 1.6E-21 124.8 9.9 81 46-131 22-105 (112)
185 2d9p_A Polyadenylate-binding p 99.7 6.5E-17 2.2E-21 122.6 10.5 84 44-130 10-95 (103)
186 2dgt_A RNA-binding protein 30; 99.7 9.4E-17 3.2E-21 119.1 11.0 78 46-130 7-84 (92)
187 2cpz_A CUG triplet repeat RNA- 99.7 1.3E-16 4.5E-21 123.4 12.1 81 47-130 23-107 (115)
188 2lxi_A RNA-binding protein 10; 99.7 2.6E-17 8.7E-22 122.1 7.5 78 49-129 1-84 (91)
189 2dnq_A RNA-binding protein 4B; 99.7 7.6E-17 2.6E-21 119.1 10.0 77 47-130 6-82 (90)
190 2dgu_A Heterogeneous nuclear r 99.7 1.5E-16 5.1E-21 120.6 11.8 77 47-130 9-85 (103)
191 2cpy_A RNA-binding protein 12; 99.7 5.2E-17 1.8E-21 125.6 9.4 78 221-302 13-94 (114)
192 2cpj_A Non-POU domain-containi 99.7 9.7E-17 3.3E-21 120.7 10.6 79 47-130 13-91 (99)
193 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.4E-17 8.1E-22 118.0 6.8 72 224-299 1-76 (77)
194 1wg5_A Heterogeneous nuclear r 99.7 1.9E-16 6.6E-21 120.3 12.3 77 222-302 14-94 (104)
195 2db1_A Heterogeneous nuclear r 99.7 6.1E-17 2.1E-21 126.0 9.7 77 222-302 16-98 (118)
196 2cqc_A Arginine/serine-rich sp 99.7 9.6E-17 3.3E-21 119.6 10.3 79 46-127 12-94 (95)
197 2jvr_A Nucleolar protein 3; RN 99.7 4.8E-17 1.6E-21 124.9 8.8 78 48-128 27-105 (111)
198 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.2E-16 4.2E-21 116.5 10.5 74 46-126 4-85 (85)
199 1x5u_A Splicing factor 3B subu 99.7 1.9E-16 6.6E-21 120.3 11.9 78 46-130 12-97 (105)
200 2e5h_A Zinc finger CCHC-type a 99.7 2E-16 6.8E-21 117.7 11.7 77 47-126 14-94 (94)
201 2ytc_A PRE-mRNA-splicing facto 99.7 1.1E-16 3.6E-21 116.9 9.9 73 47-126 10-85 (85)
202 2e5g_A U6 snRNA-specific termi 99.7 1.6E-16 5.5E-21 118.4 11.0 76 222-302 7-82 (94)
203 2la4_A Nuclear and cytoplasmic 99.7 3.2E-17 1.1E-21 123.9 7.2 76 47-127 25-100 (101)
204 3bs9_A Nucleolysin TIA-1 isofo 99.7 7.1E-17 2.4E-21 118.3 8.9 79 47-128 4-86 (87)
205 2a3j_A U1 small nuclear ribonu 99.7 1E-16 3.4E-21 126.2 10.2 78 47-131 27-113 (127)
206 3beg_B Splicing factor, argini 99.7 6.9E-17 2.4E-21 125.1 9.1 74 223-302 16-94 (115)
207 2fc9_A NCL protein; structure 99.7 2E-16 6.9E-21 119.4 11.3 77 46-129 12-92 (101)
208 1x5s_A Cold-inducible RNA-bind 99.7 1.5E-16 5.1E-21 120.3 10.4 82 46-130 9-94 (102)
209 2do4_A Squamous cell carcinoma 99.7 2.4E-16 8.1E-21 118.8 11.4 81 46-129 14-97 (100)
210 2cqh_A IGF-II mRNA-binding pro 99.7 1.7E-16 5.8E-21 118.0 10.4 77 47-129 6-84 (93)
211 1wel_A RNA-binding protein 12; 99.7 9.7E-17 3.3E-21 125.9 9.5 77 222-302 24-104 (124)
212 2dgo_A Cytotoxic granule-assoc 99.7 2.5E-16 8.7E-21 121.7 11.8 82 46-130 12-97 (115)
213 2cph_A RNA binding motif prote 99.7 3.3E-16 1.1E-20 119.4 12.2 78 46-130 12-99 (107)
214 2la6_A RNA-binding protein FUS 99.7 2.3E-16 7.8E-21 118.7 11.1 77 47-126 11-99 (99)
215 2cpf_A RNA binding motif prote 99.7 1.3E-16 4.6E-21 119.6 9.7 81 47-130 3-90 (98)
216 1whw_A Hypothetical protein ri 99.7 2.3E-16 8E-21 118.5 11.1 77 47-130 6-90 (99)
217 1x5t_A Splicing factor 3B subu 99.7 2.1E-16 7.2E-21 118.1 10.7 81 47-130 3-88 (96)
218 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.9E-16 6.7E-21 119.7 10.5 81 47-130 10-94 (102)
219 2dnp_A RNA-binding protein 14; 99.7 1.9E-16 6.6E-21 116.9 10.2 77 46-129 6-82 (90)
220 2bz2_A Negative elongation fac 99.7 1.4E-16 4.9E-21 124.4 10.0 75 221-302 37-111 (121)
221 3md1_A Nuclear and cytoplasmic 99.7 1.7E-16 5.8E-21 115.2 9.7 77 49-128 1-81 (83)
222 2dnz_A Probable RNA-binding pr 99.7 1.8E-16 6.1E-21 118.2 10.1 81 47-130 3-87 (95)
223 2dgs_A DAZ-associated protein 99.7 2.1E-16 7.3E-21 118.8 10.6 81 46-130 7-91 (99)
224 3d2w_A TAR DNA-binding protein 99.7 1.3E-16 4.3E-21 117.8 9.1 73 222-302 10-84 (89)
225 2dit_A HIV TAT specific factor 99.7 5.2E-16 1.8E-20 119.6 12.9 80 220-302 12-102 (112)
226 2fc8_A NCL protein; structure 99.7 2.6E-16 8.8E-21 119.0 11.0 78 46-130 12-94 (102)
227 2dnh_A Bruno-like 5, RNA bindi 99.7 3.4E-16 1.2E-20 119.0 11.7 84 47-130 13-99 (105)
228 2x1f_A MRNA 3'-END-processing 99.7 1.5E-16 5E-21 119.0 9.4 76 48-130 1-84 (96)
229 1why_A Hypothetical protein ri 99.7 4.6E-16 1.6E-20 116.6 12.1 78 46-128 14-93 (97)
230 1wf0_A TDP-43, TAR DNA-binding 99.7 6.9E-17 2.4E-21 118.8 7.4 75 222-304 4-80 (88)
231 3q2s_C Cleavage and polyadenyl 99.7 9.8E-17 3.4E-21 139.2 9.4 77 222-301 67-149 (229)
232 4f02_A Polyadenylate-binding p 99.7 2E-16 7E-21 135.7 11.2 78 222-302 14-95 (213)
233 2dgx_A KIAA0430 protein; RRM d 99.7 2.5E-16 8.6E-21 117.8 10.3 76 47-129 7-91 (96)
234 1x4c_A Splicing factor, argini 99.7 3.9E-16 1.3E-20 119.4 11.6 77 47-130 13-95 (108)
235 2jrs_A RNA-binding protein 39; 99.7 2.8E-16 9.6E-21 120.3 10.7 80 47-129 24-107 (108)
236 4a8x_A RNA-binding protein wit 99.7 1.9E-16 6.6E-21 116.2 9.4 78 48-128 3-85 (88)
237 2hgl_A HNRPF protein, heteroge 99.7 1.1E-16 3.7E-21 127.5 8.6 76 222-301 43-124 (136)
238 2cq0_A Eukaryotic translation 99.7 2.1E-16 7.2E-21 119.7 9.9 82 46-130 12-97 (103)
239 2cqp_A RNA-binding protein 12; 99.7 5.5E-16 1.9E-20 116.3 12.1 79 47-128 13-95 (98)
240 1x4h_A RNA-binding protein 28; 99.7 3.6E-16 1.2E-20 120.0 11.1 82 46-130 12-103 (111)
241 2kvi_A Nuclear polyadenylated 99.7 7.8E-17 2.7E-21 120.6 7.2 78 46-130 7-85 (96)
242 2dnm_A SRP46 splicing factor; 99.7 2.8E-16 9.7E-21 119.0 10.3 78 46-130 10-95 (103)
243 2pe8_A Splicing factor 45; RRM 99.7 3.4E-16 1.2E-20 119.0 10.6 77 222-301 7-93 (105)
244 1fj7_A Nucleolin RBD1, protein 99.7 1.3E-16 4.5E-21 120.4 8.2 79 47-129 15-96 (101)
245 2dgv_A HnRNP M, heterogeneous 99.7 2.6E-16 9E-21 116.6 9.7 80 47-129 6-87 (92)
246 2f3j_A RNA and export factor b 99.7 1.9E-16 6.5E-21 132.0 9.9 79 221-302 86-167 (177)
247 1whx_A Hypothetical protein ri 99.7 1.5E-16 5.1E-21 122.4 8.4 75 48-129 9-85 (111)
248 2dgp_A Bruno-like 4, RNA bindi 99.7 3.4E-16 1.2E-20 119.2 10.3 84 47-130 11-98 (106)
249 1x4g_A Nucleolysin TIAR; struc 99.7 3.5E-16 1.2E-20 119.8 10.4 78 46-130 22-101 (109)
250 1p27_B RNA-binding protein 8A; 99.7 3.5E-16 1.2E-20 119.1 10.1 79 47-128 21-103 (106)
251 2fy1_A RNA-binding motif prote 99.7 4E-16 1.4E-20 121.0 10.6 80 47-129 5-87 (116)
252 2cpx_A Hypothetical protein FL 99.7 4.4E-16 1.5E-20 120.3 10.7 81 47-130 23-107 (115)
253 2ywk_A Putative RNA-binding pr 99.7 2.5E-16 8.5E-21 117.4 8.9 79 46-127 13-94 (95)
254 1wg1_A KIAA1579 protein, homol 99.7 2.9E-16 9.8E-21 115.6 9.1 76 47-128 3-78 (88)
255 3p5t_L Cleavage and polyadenyl 99.7 8.3E-17 2.8E-21 119.0 6.1 77 50-129 2-84 (90)
256 2div_A TRNA selenocysteine ass 99.7 3.1E-16 1E-20 117.9 9.3 80 46-128 6-94 (99)
257 2rs2_A Musashi-1, RNA-binding 99.7 2.4E-16 8.2E-21 120.8 8.8 80 46-129 22-105 (109)
258 2dng_A Eukaryotic translation 99.7 6.2E-16 2.1E-20 117.2 10.9 80 46-130 12-95 (103)
259 2dgw_A Probable RNA-binding pr 99.7 8E-16 2.7E-20 113.8 11.2 77 47-128 8-87 (91)
260 2cpe_A RNA-binding protein EWS 99.7 6.8E-16 2.3E-20 118.9 11.1 82 46-130 12-105 (113)
261 2dnn_A RNA-binding protein 12; 99.7 3.4E-16 1.2E-20 119.8 9.0 74 223-301 16-92 (109)
262 1wi8_A EIF-4B, eukaryotic tran 99.7 6.3E-16 2.2E-20 117.3 10.3 79 47-130 13-96 (104)
263 2hzc_A Splicing factor U2AF 65 99.7 2.6E-16 8.9E-21 115.3 7.9 71 222-298 5-86 (87)
264 2lmi_A GRSF-1, G-rich sequence 99.6 1.2E-16 4E-21 122.2 6.1 77 222-302 10-92 (107)
265 1x5p_A Negative elongation fac 99.6 1.5E-15 5.1E-20 113.7 12.1 76 46-130 12-89 (97)
266 1nu4_A U1A RNA binding domain; 99.6 8.6E-16 2.9E-20 114.9 10.7 77 47-130 6-91 (97)
267 2j76_E EIF-4B, EIF4B, eukaryot 99.6 7.7E-17 2.6E-21 121.6 4.9 77 47-128 17-98 (100)
268 3zzy_A Polypyrimidine tract-bi 99.6 7.1E-16 2.4E-20 121.0 10.6 82 47-130 26-108 (130)
269 1b7f_A Protein (SXL-lethal pro 99.6 8.9E-16 3E-20 126.0 11.5 79 222-303 2-84 (168)
270 2ek1_A RNA-binding protein 12; 99.6 5.2E-16 1.8E-20 115.6 9.2 77 47-126 13-93 (95)
271 2cq4_A RNA binding motif prote 99.6 2.6E-16 8.9E-21 121.5 7.7 80 47-130 23-106 (114)
272 2cq2_A Hypothetical protein LO 99.6 3.8E-16 1.3E-20 119.8 8.5 79 46-128 22-106 (114)
273 2m2b_A RNA-binding protein 10; 99.6 3.9E-16 1.3E-20 123.7 8.8 80 46-129 20-109 (131)
274 1fxl_A Paraneoplastic encephal 99.6 9.1E-16 3.1E-20 125.6 11.3 78 223-303 2-83 (167)
275 1iqt_A AUF1, heterogeneous nuc 99.6 8.9E-17 3E-21 114.5 4.5 71 225-299 1-75 (75)
276 1wf1_A RNA-binding protein RAL 99.6 9.3E-16 3.2E-20 117.6 10.4 75 47-128 25-100 (110)
277 2cpi_A CCR4-NOT transcription 99.6 3.6E-16 1.2E-20 120.2 8.1 80 47-129 13-102 (111)
278 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-15 4.1E-20 117.0 10.9 75 47-128 24-106 (110)
279 1p1t_A Cleavage stimulation fa 99.6 4.4E-16 1.5E-20 118.1 8.2 81 47-130 6-90 (104)
280 1fjc_A Nucleolin RBD2, protein 99.6 3.2E-16 1.1E-20 117.1 7.4 77 46-129 13-92 (96)
281 3ulh_A THO complex subunit 4; 99.6 8E-16 2.7E-20 117.3 9.7 78 46-126 26-106 (107)
282 2cqd_A RNA-binding region cont 99.6 1.9E-15 6.3E-20 117.0 11.9 81 45-129 13-97 (116)
283 3u1l_A PRE-mRNA-splicing facto 99.6 3.6E-16 1.2E-20 135.5 8.6 76 222-302 133-229 (240)
284 2kt5_A RNA and export factor-b 99.6 3.6E-15 1.2E-19 116.8 13.5 81 46-129 32-115 (124)
285 2e44_A Insulin-like growth fac 99.6 9.1E-16 3.1E-20 114.6 9.5 79 47-128 13-92 (96)
286 2do0_A HnRNP M, heterogeneous 99.6 2E-15 6.8E-20 116.4 11.6 80 46-128 12-94 (114)
287 3ns6_A Eukaryotic translation 99.6 3.3E-16 1.1E-20 118.1 7.0 80 47-129 4-94 (100)
288 2hgn_A Heterogeneous nuclear r 99.6 1.5E-16 5.3E-21 127.0 5.2 78 222-304 45-125 (139)
289 1x4b_A Heterogeneous nuclear r 99.6 1E-15 3.6E-20 118.5 9.7 81 46-130 24-108 (116)
290 2dhg_A TRNA selenocysteine ass 99.6 5.5E-16 1.9E-20 117.6 8.0 81 47-130 7-92 (104)
291 2cpy_A RNA-binding protein 12; 99.6 1.1E-15 3.6E-20 118.1 9.6 80 46-129 12-95 (114)
292 1s79_A Lupus LA protein; RRM, 99.6 6.5E-16 2.2E-20 117.1 8.1 79 46-128 8-89 (103)
293 2lea_A Serine/arginine-rich sp 99.6 3.8E-16 1.3E-20 124.4 7.1 81 46-129 44-128 (135)
294 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2.4E-15 8.1E-20 120.2 11.8 74 45-125 59-140 (140)
295 2jwn_A Embryonic polyadenylate 99.6 4.3E-16 1.5E-20 122.1 7.2 79 47-129 34-116 (124)
296 1wel_A RNA-binding protein 12; 99.6 1.6E-15 5.5E-20 118.9 10.3 80 46-129 22-105 (124)
297 2adc_A Polypyrimidine tract-bi 99.6 8.3E-16 2.8E-20 133.4 9.4 79 220-302 31-110 (229)
298 2e5i_A Heterogeneous nuclear r 99.6 7.1E-15 2.4E-19 114.7 13.6 79 49-130 25-104 (124)
299 2db1_A Heterogeneous nuclear r 99.6 1.3E-15 4.5E-20 118.4 9.3 80 46-129 14-99 (118)
300 2i2y_A Fusion protein consists 99.6 1.9E-15 6.4E-20 122.5 10.6 76 46-128 70-148 (150)
301 3ex7_B RNA-binding protein 8A; 99.6 2.1E-15 7.3E-20 118.4 10.6 77 47-130 20-104 (126)
302 3md3_A Nuclear and cytoplasmic 99.6 1.8E-15 6.3E-20 123.6 10.6 77 224-303 1-80 (166)
303 3s7r_A Heterogeneous nuclear r 99.6 1.8E-15 6.1E-20 110.9 9.5 76 46-125 8-87 (87)
304 2hgl_A HNRPF protein, heteroge 99.6 1.1E-15 3.7E-20 121.6 8.9 80 45-128 40-125 (136)
305 3ucg_A Polyadenylate-binding p 99.6 1.3E-15 4.5E-20 112.0 8.7 77 48-128 5-85 (89)
306 2dh8_A DAZ-associated protein 99.6 9.4E-16 3.2E-20 116.5 8.0 82 45-130 12-97 (105)
307 1x5o_A RNA binding motif, sing 99.6 4.3E-15 1.5E-19 114.5 11.6 84 45-128 21-112 (114)
308 2dis_A Unnamed protein product 99.6 1.7E-15 5.7E-20 115.9 9.0 81 47-130 6-94 (109)
309 3pgw_A U1-A; protein-RNA compl 99.6 2.2E-15 7.6E-20 134.5 11.3 81 220-303 6-91 (282)
310 2cqg_A TDP-43, TAR DNA-binding 99.6 5.3E-15 1.8E-19 111.9 11.5 81 45-130 11-95 (103)
311 3pgw_S U1-70K; protein-RNA com 99.6 3.3E-15 1.1E-19 141.4 12.5 78 222-302 101-182 (437)
312 3egn_A RNA-binding protein 40; 99.6 2.5E-15 8.6E-20 120.7 9.9 80 47-129 43-131 (143)
313 1x4e_A RNA binding motif, sing 99.6 2.8E-16 9.5E-21 114.7 3.5 77 47-126 3-83 (85)
314 2dnn_A RNA-binding protein 12; 99.6 2.4E-15 8.2E-20 115.1 8.8 77 47-128 14-93 (109)
315 1wg5_A Heterogeneous nuclear r 99.6 5.3E-15 1.8E-19 112.3 10.6 78 47-128 13-94 (104)
316 2hgm_A HNRPF protein, heteroge 99.6 2E-15 6.7E-20 118.4 8.3 75 222-301 41-120 (126)
317 3v4m_A Splicing factor U2AF 65 99.6 2.6E-15 8.8E-20 114.2 8.7 77 221-300 3-95 (105)
318 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.6E-15 1.2E-19 121.6 10.2 82 46-130 36-121 (156)
319 2nlw_A Eukaryotic translation 99.6 4.3E-15 1.5E-19 113.0 9.8 75 47-128 13-100 (105)
320 2hzc_A Splicing factor U2AF 65 99.6 1.5E-15 5.1E-20 111.2 7.0 74 47-124 4-86 (87)
321 2dha_A FLJ20171 protein; RRM d 99.6 1.2E-15 4.2E-20 119.2 6.8 76 222-301 22-104 (123)
322 1wez_A HnRNP H', FTP-3, hetero 99.6 2.8E-15 9.7E-20 113.4 8.5 78 47-128 13-92 (102)
323 2e5g_A U6 snRNA-specific termi 99.6 2.7E-15 9.1E-20 111.7 8.1 78 47-129 6-83 (94)
324 2mss_A Protein (musashi1); RNA 99.6 1.5E-15 5.3E-20 108.0 6.4 71 51-125 1-75 (75)
325 2kn4_A Immunoglobulin G-bindin 99.6 1.2E-14 4E-19 118.7 12.1 80 47-129 68-151 (158)
326 1qm9_A Polypyrimidine tract-bi 99.6 2.1E-15 7.2E-20 127.5 7.6 76 223-302 3-79 (198)
327 2voo_A Lupus LA protein; RNA-b 99.6 6.9E-15 2.4E-19 124.2 10.7 80 223-306 109-191 (193)
328 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.8E-15 9.6E-20 107.1 6.7 72 50-125 1-76 (77)
329 2krb_A Eukaryotic translation 99.6 2.3E-15 7.8E-20 108.9 6.1 67 49-122 1-80 (81)
330 2qfj_A FBP-interacting repress 99.6 6.3E-15 2.1E-19 126.0 9.9 78 222-302 27-108 (216)
331 2lmi_A GRSF-1, G-rich sequence 99.6 2.5E-15 8.6E-20 114.7 6.5 79 47-129 9-93 (107)
332 1l3k_A Heterogeneous nuclear r 99.6 8.2E-15 2.8E-19 123.3 10.3 77 222-302 12-92 (196)
333 3nmr_A Cugbp ELAV-like family 99.6 6.7E-15 2.3E-19 121.4 9.6 80 223-302 3-88 (175)
334 2ki2_A SS-DNA binding protein 99.6 9.1E-16 3.1E-20 113.2 3.9 76 50-129 2-81 (90)
335 2j8a_A Histone-lysine N-methyl 99.6 5E-15 1.7E-19 114.5 8.1 75 224-301 3-95 (136)
336 2f3j_A RNA and export factor b 99.6 2.8E-14 9.5E-19 118.8 13.1 82 45-129 84-168 (177)
337 3s6e_A RNA-binding protein 39; 99.6 1.3E-14 4.4E-19 111.8 10.0 77 222-301 6-92 (114)
338 2bz2_A Negative elongation fac 99.6 1.3E-14 4.3E-19 113.3 10.0 76 47-129 37-112 (121)
339 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1E-14 3.6E-19 120.0 9.6 81 47-130 70-154 (165)
340 2dnl_A Cytoplasmic polyadenyla 99.6 5.1E-15 1.7E-19 114.3 7.2 60 222-282 7-73 (114)
341 2hgm_A HNRPF protein, heteroge 99.6 2.8E-15 9.7E-20 117.5 5.7 76 47-127 40-120 (126)
342 3q2s_C Cleavage and polyadenyl 99.5 3.9E-15 1.3E-19 129.1 6.5 79 48-129 67-151 (229)
343 3ue2_A Poly(U)-binding-splicin 99.5 2E-14 6.8E-19 111.4 9.8 76 222-300 19-107 (118)
344 2hgn_A Heterogeneous nuclear r 99.5 1.8E-15 6.1E-20 120.8 3.7 79 46-128 43-123 (139)
345 3beg_B Splicing factor, argini 99.5 1.1E-14 3.7E-19 112.6 7.6 74 47-127 14-93 (115)
346 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.1E-13 3.7E-18 104.0 12.6 76 223-304 10-92 (100)
347 3sde_A Paraspeckle component 1 99.5 2.4E-14 8.3E-19 126.6 10.4 76 221-301 20-95 (261)
348 2lcw_A RNA-binding protein FUS 99.3 6.4E-16 2.2E-20 119.7 0.0 82 47-131 5-98 (116)
349 3d2w_A TAR DNA-binding protein 99.5 5.2E-14 1.8E-18 103.7 9.4 75 46-129 8-85 (89)
350 1iqt_A AUF1, heterogeneous nuc 99.5 8.9E-15 3E-19 103.9 5.1 71 51-125 1-75 (75)
351 2dha_A FLJ20171 protein; RRM d 99.5 1.9E-14 6.7E-19 112.3 7.1 78 47-128 21-105 (123)
352 1wf0_A TDP-43, TAR DNA-binding 99.5 1.5E-14 5E-19 106.2 5.8 73 47-130 3-80 (88)
353 3u1l_A PRE-mRNA-splicing facto 99.5 2.8E-14 9.7E-19 123.6 8.3 78 46-130 131-231 (240)
354 3tht_A Alkylated DNA repair pr 99.5 3.5E-14 1.2E-18 129.4 9.3 79 220-300 15-97 (345)
355 2g4b_A Splicing factor U2AF 65 99.5 8.4E-14 2.9E-18 114.6 10.1 75 222-302 3-88 (172)
356 2cjk_A Nuclear polyadenylated 99.5 4.7E-14 1.6E-18 115.6 7.8 76 222-302 2-81 (167)
357 2xs2_A Deleted in azoospermia- 99.5 1.8E-14 6.1E-19 108.8 4.8 78 47-129 7-87 (102)
358 2dit_A HIV TAT specific factor 99.5 2.2E-13 7.5E-18 104.7 10.9 81 47-130 13-104 (112)
359 2yh0_A Splicing factor U2AF 65 99.5 7.7E-14 2.6E-18 117.5 9.0 75 222-302 3-88 (198)
360 1fje_B Nucleolin RBD12, protei 99.5 1E-13 3.4E-18 114.7 9.2 75 47-128 97-174 (175)
361 2dnl_A Cytoplasmic polyadenyla 99.5 5.7E-14 1.9E-18 108.3 6.8 74 47-126 6-86 (114)
362 3pgw_S U1-70K; protein-RNA com 99.5 1.5E-13 5.3E-18 129.9 10.6 81 46-129 99-183 (437)
363 1jmt_A Splicing factor U2AF 35 99.5 2E-14 6.8E-19 109.1 3.2 69 228-299 20-103 (104)
364 2pe8_A Splicing factor 45; RRM 99.4 5.3E-13 1.8E-17 101.3 9.5 81 47-130 6-96 (105)
365 3tht_A Alkylated DNA repair pr 99.4 5E-13 1.7E-17 121.8 9.9 78 45-126 14-97 (345)
366 2voo_A Lupus LA protein; RNA-b 99.4 1.5E-12 5E-17 109.9 8.6 77 48-128 108-187 (193)
367 2j8a_A Histone-lysine N-methyl 99.3 1.7E-12 6E-17 100.3 7.1 77 50-129 3-97 (136)
368 2dnr_A Synaptojanin-1; RRM dom 99.3 1.3E-11 4.3E-16 89.5 8.3 75 220-302 4-86 (91)
369 1owx_A Lupus LA protein, SS-B, 99.3 3.2E-11 1.1E-15 93.0 10.5 76 219-299 14-93 (121)
370 3v4m_A Splicing factor U2AF 65 99.3 2.2E-11 7.4E-16 92.3 9.2 76 47-129 3-98 (105)
371 3s6e_A RNA-binding protein 39; 99.2 3.2E-11 1.1E-15 92.7 9.4 81 47-130 5-95 (114)
372 2d9o_A DNAJ (HSP40) homolog, s 99.2 6.1E-11 2.1E-15 88.9 10.1 72 49-129 10-91 (100)
373 3ue2_A Poly(U)-binding-splicin 99.2 4.2E-11 1.4E-15 92.6 7.9 78 48-128 19-109 (118)
374 1jmt_A Splicing factor U2AF 35 99.2 7.8E-12 2.7E-16 94.6 2.7 69 54-125 20-103 (104)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 1.1E-10 3.6E-15 85.0 6.2 74 219-300 11-93 (95)
376 3dxb_A Thioredoxin N-terminall 99.0 1.2E-09 4.2E-14 93.8 10.2 75 223-300 124-211 (222)
377 1owx_A Lupus LA protein, SS-B, 99.0 2.7E-09 9.2E-14 82.2 10.1 74 47-127 16-95 (121)
378 2dnr_A Synaptojanin-1; RRM dom 98.9 4.1E-09 1.4E-13 76.3 7.3 73 47-127 5-85 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.8 2.5E-08 8.6E-13 73.9 8.2 71 223-298 21-96 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.5 6E-08 2E-12 70.5 4.0 69 47-125 13-92 (95)
381 1wey_A Calcipressin 1; structu 98.4 1.2E-06 4.1E-11 64.8 8.8 87 223-317 5-96 (104)
382 3dxb_A Thioredoxin N-terminall 98.4 4.8E-07 1.7E-11 77.4 6.2 67 60-129 140-214 (222)
383 2l9w_A U4/U6 snRNA-associated- 98.2 6.4E-06 2.2E-10 61.1 8.9 76 47-125 19-97 (117)
384 1uw4_A UPF3X; nonsense mediate 97.8 0.00019 6.5E-09 52.0 10.3 77 224-300 2-86 (91)
385 1wey_A Calcipressin 1; structu 97.7 2.6E-05 8.8E-10 57.6 3.3 71 49-127 5-83 (104)
386 1whv_A Poly(A)-specific ribonu 97.6 0.00021 7E-09 51.9 7.6 56 48-108 15-70 (100)
387 2dhx_A Poly (ADP-ribose) polym 97.6 0.00051 1.7E-08 50.5 9.4 74 47-124 6-80 (104)
388 1uw4_A UPF3X; nonsense mediate 97.6 0.00041 1.4E-08 50.2 8.7 74 50-125 2-85 (91)
389 2dhx_A Poly (ADP-ribose) polym 97.4 0.00096 3.3E-08 49.0 9.0 67 222-296 7-78 (104)
390 1whv_A Poly(A)-specific ribonu 97.3 0.0012 4.3E-08 47.8 8.5 55 223-282 16-70 (100)
391 1wwh_A Nucleoporin 35, nucleop 97.2 0.0015 5E-08 49.5 8.2 62 223-288 24-85 (119)
392 3ctr_A Poly(A)-specific ribonu 97.2 0.0002 6.9E-09 52.1 3.1 55 49-108 6-60 (101)
393 3ctr_A Poly(A)-specific ribonu 97.2 0.00077 2.6E-08 49.1 5.9 55 223-282 6-60 (101)
394 2l08_A Regulator of nonsense t 97.1 0.0009 3.1E-08 48.8 5.7 75 49-125 9-93 (97)
395 2l08_A Regulator of nonsense t 96.9 0.0023 8E-08 46.6 6.7 77 223-299 9-93 (97)
396 3pq1_A Poly(A) RNA polymerase; 96.0 0.0035 1.2E-07 58.9 3.4 55 223-279 53-107 (464)
397 3p3d_A Nucleoporin 53; structu 95.3 0.023 7.9E-07 43.6 5.0 71 223-298 7-95 (132)
398 1wwh_A Nucleoporin 35, nucleop 94.8 0.17 5.9E-06 38.1 8.5 71 47-125 22-94 (119)
399 3pq1_A Poly(A) RNA polymerase; 90.7 0.1 3.5E-06 49.0 2.3 53 48-105 52-107 (464)
400 3p3d_A Nucleoporin 53; structu 90.1 0.45 1.6E-05 36.4 5.0 69 49-126 7-97 (132)
401 3d45_A Poly(A)-specific ribonu 89.5 1 3.5E-05 42.9 8.2 55 49-108 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 88.1 0.91 3.1E-05 43.2 6.8 55 223-282 440-494 (507)
403 2g0c_A ATP-dependent RNA helic 84.5 2.2 7.7E-05 28.9 5.6 68 225-300 2-75 (76)
404 3ts2_A Protein LIN-28 homolog 53.8 3.3 0.00011 32.4 0.5 28 64-95 2-29 (148)
405 2eqj_A Metal-response element- 53.7 10 0.00036 25.0 2.8 21 76-96 30-50 (66)
406 2e5p_A Protein PHF1, PHD finge 52.1 12 0.0004 24.7 2.8 20 77-96 27-46 (68)
407 2m0o_A PHD finger protein 1; t 47.6 63 0.0021 21.9 6.6 21 76-96 43-63 (79)
408 2e5q_A PHD finger protein 19; 46.8 8.4 0.00029 25.0 1.5 20 77-96 25-44 (63)
409 4e8u_A Putative uncharacterize 45.3 44 0.0015 26.6 5.8 55 225-279 14-81 (172)
410 4eyt_A Telomerase associated p 44.7 78 0.0027 22.1 7.8 56 223-282 12-67 (129)
411 4hcz_A PHD finger protein 1; p 41.3 22 0.00077 22.7 2.8 20 77-96 21-40 (58)
412 3ts2_A Protein LIN-28 homolog 41.0 7.1 0.00024 30.4 0.5 28 238-269 2-29 (148)
413 2ki0_A DS119; beta-alpha-beta, 39.4 15 0.0005 20.1 1.5 21 47-72 3-23 (36)
414 2f9f_A First mannosyl transfer 38.1 54 0.0019 25.3 5.5 27 47-73 22-48 (177)
415 2g0c_A ATP-dependent RNA helic 37.0 88 0.003 20.5 6.6 64 59-126 11-75 (76)
416 2kcm_A Cold shock domain famil 34.4 27 0.00093 23.6 2.6 19 78-96 3-21 (74)
417 1g6p_A Cold shock protein TMCS 32.2 33 0.0011 22.4 2.7 18 78-95 3-20 (66)
418 2f06_A Conserved hypothetical 31.4 1.5E+02 0.005 22.1 6.9 49 238-287 87-136 (144)
419 3cam_A Cold-shock domain famil 29.8 35 0.0012 22.4 2.5 18 78-95 4-21 (67)
420 1c9o_A CSPB, cold-shock protei 29.0 37 0.0013 22.2 2.5 18 78-95 4-21 (66)
421 1h95_A CSD, Y-box binding prot 27.8 36 0.0012 23.2 2.4 18 78-95 11-28 (79)
422 3a0j_A Cold shock protein; OB- 27.7 39 0.0014 22.5 2.5 19 78-96 4-22 (73)
423 2k5n_A Putative cold-shock pro 27.4 50 0.0017 22.2 3.0 20 77-96 4-23 (74)
424 3i2z_B RNA chaperone, negative 25.9 42 0.0014 22.3 2.4 20 77-96 7-26 (71)
425 1fme_A FSD-EY peptide; beta-BE 22.9 62 0.0021 16.6 2.1 13 62-74 14-26 (28)
426 3aqq_A Calcium-regulated heat 22.8 59 0.002 25.1 3.0 21 76-96 63-83 (147)
427 4eyt_A Telomerase associated p 22.7 2E+02 0.0068 20.1 7.8 57 47-107 10-66 (129)
428 3j21_T 50S ribosomal protein L 22.3 1.2E+02 0.0042 20.9 4.3 54 51-104 24-80 (86)
429 3fut_A Dimethyladenosine trans 21.9 60 0.002 27.7 3.2 23 50-72 111-133 (271)
430 3ulj_A LIN28B, DNA-binding pro 21.8 58 0.002 22.9 2.5 17 78-94 11-27 (90)
431 3fry_A Probable copper-exporti 21.6 1.6E+02 0.0055 18.5 5.7 59 223-285 6-64 (73)
No 1
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.1e-33 Score=254.07 Aligned_cols=242 Identities=24% Similarity=0.379 Sum_probs=149.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHhhhCCCccccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCC
Q 020917 46 HDEVRTIFITGLPDDVKERELQ----NLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~----~lF~~~~~~~~~iv~~~-----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~ 116 (320)
..++++|||+|||.++|+++|+ ++|+.| |.|+.++ ..+|||||+|.+.++|.+|++.|||..|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~----G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 78 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQF----GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY--- 78 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc----CCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC---
Confidence 3568999999999999999987 788888 5553331 24699999999999999999999999998
Q ss_pred CCeEEEEEcccccccccCCccCCccccccccccCCCCCC----------------CCCCCCCCCCC-CCC--------CC
Q 020917 117 KSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYT----------------HTGYSAPSPFH-APP--------AP 171 (320)
Q Consensus 117 gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~-~~~--------~~ 171 (320)
|+.|+|.|++.+....... .+...+............ ........... ..+ ..
T Consensus 79 g~~l~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 3pgw_A 79 DKPMRIQYAKTDSDIIAKM--KGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHH 156 (282)
T ss_pred CcEEEEEEeccCcchhhhh--cCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccccc
Confidence 8999999997765421110 111111110000000000 00000000000 000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCee
Q 020917 172 VWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFK 251 (320)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~ 251 (320)
..+...++.++..+ .+.+..+...+..........+............+++++|||+||+.++++++|+++|++||.|.
T Consensus 157 ~~g~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~ 235 (282)
T 3pgw_A 157 MPGQPPYMPPPGMI-PPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK 235 (282)
T ss_pred CCCCCCCCCCCCCC-CCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE
Confidence 00000111000000 00000000000000001111112222233444566789999999999999999999999999999
Q ss_pred EEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeC-CCCCceeEEEeecC
Q 020917 252 QMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIP-SSGSVGMRIQYSKN 301 (320)
Q Consensus 252 ~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~-g~~~~~l~v~~ak~ 301 (320)
+|+++++ .+|||||+|.+.++|.+|++.|||+.|. | +.|+|+|+|.
T Consensus 236 ~v~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g---~~l~v~~akk 282 (282)
T 3pgw_A 236 EVRLVPG-RHDIAFVEFDNEVQAGAARDALQGFKITQN---NAMKISFAKK 282 (282)
T ss_pred EEEEecC-CCcEEEEEeCCHHHHHHHHHHcCCcEeCCC---CEEEEEEecC
Confidence 9999853 3699999999999999999999999999 7 8999999974
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.1e-34 Score=246.71 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=137.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++||++|+++|+.|+.+..+.+.. + ..+|||||+|.+.++|.+|++.++|..+. |+.|++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~---g~~i~~ 89 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK---GKPVRI 89 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC---Cccccc
Confidence 4578999999999999999999999994443332322 1 13599999999999999999999999998 799999
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
.++........
T Consensus 90 ~~~~~~~~~~~--------------------------------------------------------------------- 100 (213)
T 4f02_A 90 MWSQRDPSLRK--------------------------------------------------------------------- 100 (213)
T ss_dssp EECCCCTHHHH---------------------------------------------------------------------
T ss_pred ccccccccccc---------------------------------------------------------------------
Confidence 98854322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC--cceEEEEEcCHHHHHHHHHH
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHN 280 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~ 280 (320)
...++|||+||+.++|+++|+++|++||.|.+++|+++.+ +|||||+|.+.++|.+|++.
T Consensus 101 ------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~ 162 (213)
T 4f02_A 101 ------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 162 (213)
T ss_dssp ------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHH
T ss_pred ------------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHH
Confidence 0146899999999999999999999999999999987654 89999999999999999999
Q ss_pred hCCCeeCCCCCceeEEEeecCC
Q 020917 281 LQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 281 lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
|||..|.| ++|+|.|++.+
T Consensus 163 lng~~~~g---~~i~V~~a~~~ 181 (213)
T 4f02_A 163 MNGMLLND---RKVFVGRFKSR 181 (213)
T ss_dssp HTTCEETT---EECEEEECCCH
T ss_pred hCCCEECC---EEEEEEEcCCC
Confidence 99999999 99999999764
No 3
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=2.5e-33 Score=244.48 Aligned_cols=191 Identities=19% Similarity=0.252 Sum_probs=142.9
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~-~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.++++|||+|||. ++|+++|+++|+.| |.|..+ +..+|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~----G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~---g~~l~v 104 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH---GKPIRI 104 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHH----TCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCS---SSBCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEE
Confidence 4689999999999 99999999999999 666443 233699999999999999999999999998 899999
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
.|++.............. ...+ ++. ... .... ..
T Consensus 105 ~~a~~~~~~~~~~~~~~~--~~~~------~~~----~~~--~~~~----------~~---------------------- 138 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQ--GLTK------DYG----NSP--LHRF----------KK---------------------- 138 (229)
T ss_dssp ECCSCCCCCCCCSSSSTT--TTEE------ECT----TCS--SCCC----------CS----------------------
T ss_pred EEecCccccCcccccccc--cccc------ccc----cCc--cccc----------CC----------------------
Confidence 999765432110000000 0000 000 000 0000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEecCCcceEEEEEcCHHHHHHHHHHh
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL 281 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~l 281 (320)
+ .........+++++|||+||+.++++++|+++|++|| .|.+++++. .++|+|||+|.+.++|.+|++.|
T Consensus 139 -----~---~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~l 209 (229)
T 2adc_A 139 -----P---GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDL 209 (229)
T ss_dssp -----T---TSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS-SSTTCEEEEESSHHHHHHHHHHH
T ss_pred -----c---cccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE-CCCcEEEEEECCHHHHHHHHHHH
Confidence 0 0000011234579999999999999999999999999 999999975 45799999999999999999999
Q ss_pred CCCeeC-CCCCceeEEEeecCC
Q 020917 282 QGAVIP-SSGSVGMRIQYSKNP 302 (320)
Q Consensus 282 nG~~l~-g~~~~~l~v~~ak~~ 302 (320)
||..|. | +.|+|.|++++
T Consensus 210 ~g~~~~~g---~~l~v~~a~~~ 228 (229)
T 2adc_A 210 HNHDLGEN---HHLRVSFSKST 228 (229)
T ss_dssp TTCBSSSS---CBCEEEECSSC
T ss_pred CCCccCCC---CeEEEEEecCC
Confidence 999999 7 89999999876
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=227.46 Aligned_cols=159 Identities=17% Similarity=0.299 Sum_probs=134.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
|+|||+|||.++|+++|+++|+.|+.+....+.. + ..+|||||+|.+.++|.+|++.|+|..+. |+.|+|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE---NNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC---CCeeEEEEcC
Confidence 6899999999999999999999994332222221 1 23599999999999999999999999998 8999999985
Q ss_pred cccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 127 KNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVP 206 (320)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (320)
.....
T Consensus 78 ~~~~~--------------------------------------------------------------------------- 82 (166)
T 3md3_A 78 QSQQS--------------------------------------------------------------------------- 82 (166)
T ss_dssp CCCCC---------------------------------------------------------------------------
T ss_pred CCCCC---------------------------------------------------------------------------
Confidence 32110
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhC
Q 020917 207 APSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~ln 282 (320)
...+.++|||+|||.++++++|+++|++||.|.++++..+.. +|+|||+|.+.++|.+|++.||
T Consensus 83 ------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 83 ------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp ------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred ------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 001367899999999999999999999999999999987632 7899999999999999999999
Q ss_pred CCeeCCCCCceeEEEeecC
Q 020917 283 GAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 283 G~~l~g~~~~~l~v~~ak~ 301 (320)
|..|.| +.|+|+|++.
T Consensus 151 g~~~~g---~~i~v~~a~~ 166 (166)
T 3md3_A 151 GQDLNG---RPLRINWAAK 166 (166)
T ss_dssp TCEETT---EECEEEESCC
T ss_pred CCccCC---cEEEEEecCC
Confidence 999999 9999999874
No 5
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=8.2e-33 Score=229.79 Aligned_cols=156 Identities=17% Similarity=0.336 Sum_probs=135.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccc-------cEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEA-------SQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~-------~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
+.++|||+|||.++|+++|+++|+.|+.+.+ .|+.+ ..++|||||+|.+.++|.+|+ .|||..+. |+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~---g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ---GQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEET---TE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEec---Cc
Confidence 5789999999999999999999999954444 45443 456899999999999999999 79999998 89
Q ss_pred eEEEEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (320)
Q Consensus 119 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (320)
.|+|.++.....
T Consensus 79 ~i~v~~~~~~~~-------------------------------------------------------------------- 90 (172)
T 2g4b_A 79 SLKIRRPHDYQP-------------------------------------------------------------------- 90 (172)
T ss_dssp ECEEECCSSCCC--------------------------------------------------------------------
T ss_pred eeeecCCcccCC--------------------------------------------------------------------
Confidence 999987642210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHH
Q 020917 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSA 274 (320)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A 274 (320)
....++|||+|||..+++++|+++|++||.|.++++.++.. +|+|||+|.+.++|
T Consensus 91 ---------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 149 (172)
T 2g4b_A 91 ---------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 149 (172)
T ss_dssp ---------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred ---------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 00157899999999999999999999999999999987642 78999999999999
Q ss_pred HHHHHHhCCCeeCCCCCceeEEEee
Q 020917 275 SSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 275 ~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
.+|++.|||..|.| +.|+|+||
T Consensus 150 ~~A~~~l~g~~~~g---~~l~V~~A 171 (172)
T 2g4b_A 150 DQAIAGLNGMQLGD---KKLLVQRA 171 (172)
T ss_dssp HHHHHHHTTCEETT---EECEEEEC
T ss_pred HHHHHHcCCCEECC---eEEEEEeC
Confidence 99999999999999 99999997
No 6
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.8e-32 Score=232.91 Aligned_cols=179 Identities=16% Similarity=0.277 Sum_probs=141.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccc-------cEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEA-------SQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~-------~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
..++|||+|||.++|+++|+++|+.|+.+.+ .|+.+ ..++|||||+|.+.++|++|+ .|||..|. |+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~---g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ---GQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEET---TE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEc---Cc
Confidence 5789999999999999999999999954444 44443 356799999999999999999 79999998 89
Q ss_pred eEEEEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 119 VLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQ 198 (320)
Q Consensus 119 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (320)
.|+|.+++........ . . . .... .
T Consensus 79 ~i~v~~~~~~~~~~~~-----~-----~--~-------~~~~-------~------------------------------ 102 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGM-----S-----E--N-------PSVY-------V------------------------------ 102 (198)
T ss_dssp EEEEECCCCCCCCCCS-----S-----S--C-------SSCC-------C------------------------------
T ss_pred eEEEeCCCCCCCCCCC-----c-----C--C-------CcCC-------C------------------------------
Confidence 9999988654221100 0 0 0 0000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHH
Q 020917 199 MPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSA 274 (320)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A 274 (320)
+ .........+.++|||+|||.++++++|+++|++||.|.++++..+.. +|||||+|.+.++|
T Consensus 103 ---------~----~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a 169 (198)
T 2yh0_A 103 ---------P----GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 169 (198)
T ss_dssp ---------T----TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHH
T ss_pred ---------C----CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHH
Confidence 0 000011123478999999999999999999999999999999987642 79999999999999
Q ss_pred HHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 275 SSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 275 ~~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
.+|++.|||..|.| +.|+|.|++.+
T Consensus 170 ~~A~~~l~g~~~~g---~~l~v~~a~~~ 194 (198)
T 2yh0_A 170 DQAIAGLNGMQLGD---KKLLVQRASVG 194 (198)
T ss_dssp HHHHHHHTTCEETT---EECEEEESCCC
T ss_pred HHHHHHcCCCEECC---EEEEEEECCCC
Confidence 99999999999999 99999999887
No 7
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.2e-32 Score=235.98 Aligned_cols=194 Identities=10% Similarity=0.100 Sum_probs=139.2
Q ss_pred CCcceEEEcCCC-CCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLP-DDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp-~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.++++|||+||| +.+|+++|+++|+.| |.|+.+ +..+|||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~----G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~---g~~l~v 74 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLY----GNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMF---GQKMNV 74 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTT----SCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc----CCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CceEEE
Confidence 357899999999 899999999999999 777554 345799999999999999999999999998 899999
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
.|++.+....+.. . . ..... . ...++ ... ..... ..
T Consensus 75 ~~s~~~~~~p~~~--~-~-~~~~~-~-~~~~~----~~~--~~~r~----------~~---------------------- 110 (205)
T 3tyt_A 75 CVSKQPAIMPGQS--Y-G-LEDGS-C-SYKDF----SES--RNNRF----------ST---------------------- 110 (205)
T ss_dssp EECSCSCCCCCSC--C-B-CTTSC-B-SEEEC----TTC--TTCSC----------SS----------------------
T ss_pred EEccCCccCCCcc--c-c-cccCC-c-ccccc----CCC--ccccc----------cC----------------------
Confidence 9997554321100 0 0 00000 0 00000 000 00000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCe--eEEEEEecCC--cceEEEEEcCHHHHHHHH
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGF--KQMKVLRQER--HTVCFIEFEDVNSASSVH 278 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i--~~v~i~~~~~--~g~aFV~F~~~~~A~~Al 278 (320)
+ .........+++++|||+|||+++|+++|+++|++||.| .+++++.+.+ +|+|||+|.+.++|.+||
T Consensus 111 -----~---~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 111 -----P---EQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp -----H---HHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHH
T ss_pred -----c---ccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHH
Confidence 0 000000112357899999999999999999999999999 8999986532 699999999999999999
Q ss_pred HHhCCCeeCCCC-CceeEEEee
Q 020917 279 HNLQGAVIPSSG-SVGMRIQYS 299 (320)
Q Consensus 279 ~~lnG~~l~g~~-~~~l~v~~a 299 (320)
..|||+.|.|.+ +.++.|.|+
T Consensus 183 ~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 183 GFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHTTCEECCSSSSSCEECEEE
T ss_pred HHhCCCCccCCCCCcceEEEec
Confidence 999999999854 236777665
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.4e-32 Score=226.36 Aligned_cols=165 Identities=19% Similarity=0.275 Sum_probs=135.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee------CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
+.++|||+|||.++|+++|+++|+.|+.+....+... .++|||||+|.+.++|++|++.|+|..+....++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5789999999999999999999999944433323221 2359999999999999999999999988654467888
Q ss_pred EEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (320)
Q Consensus 122 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (320)
+.++......
T Consensus 82 ~~~~~~~~~~---------------------------------------------------------------------- 91 (175)
T 3nmr_A 82 MKPADSEKNN---------------------------------------------------------------------- 91 (175)
T ss_dssp EEECGGGCCS----------------------------------------------------------------------
T ss_pred Eccccccccc----------------------------------------------------------------------
Confidence 8776432110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHH
Q 020917 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVH 278 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al 278 (320)
....++|||+|||.++|+++|+++|++||.|.++++.++.+ +|||||+|.+.++|.+|+
T Consensus 92 ------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 92 ------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp ------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred ------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHH
Confidence 00257899999999999999999999999999999987644 789999999999999999
Q ss_pred HHhCCCeeCCCCCceeEEEeec
Q 020917 279 HNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 279 ~~lnG~~l~g~~~~~l~v~~ak 300 (320)
+.|||..+.+...++|+|.|+.
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEECC
T ss_pred HHhcCCcccCCCCCCeEEEecC
Confidence 9999998874222899999973
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=7.1e-32 Score=223.11 Aligned_cols=159 Identities=18% Similarity=0.278 Sum_probs=134.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
++++|||+|||.++|+++|+++|+.|+.+....+... + .+|||||+|.+.++|.+|++.|+|..+. |+.|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR---NKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC---CcEEEEE
Confidence 4789999999999999999999999933322222211 1 2599999999999999999999999998 8999999
Q ss_pred EcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 124 MAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (320)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (320)
|+......
T Consensus 79 ~~~~~~~~------------------------------------------------------------------------ 86 (168)
T 1b7f_A 79 YARPGGES------------------------------------------------------------------------ 86 (168)
T ss_dssp ECCCCSST------------------------------------------------------------------------
T ss_pred ecCCCccc------------------------------------------------------------------------
Confidence 98532110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHH
Q 020917 204 PVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHH 279 (320)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~ 279 (320)
.+.++|||+|||.++++++|+++|++||.|.++++.++.. +|+|||+|.+.++|.+|++
T Consensus 87 -----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 87 -----------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp -----------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred -----------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 1257899999999999999999999999999999987642 6899999999999999999
Q ss_pred HhCCCeeCCCCCceeEEEee
Q 020917 280 NLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 280 ~lnG~~l~g~~~~~l~v~~a 299 (320)
.|||..|.|. .++|+|.||
T Consensus 150 ~l~g~~~~g~-~~~l~V~~A 168 (168)
T 1b7f_A 150 ALNNVIPEGG-SQPLSVRLA 168 (168)
T ss_dssp HHTTCCCTTC-SSCCEEEEC
T ss_pred HhcCCEecCC-CeEEEEEeC
Confidence 9999999763 279999986
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=7.1e-32 Score=222.58 Aligned_cols=158 Identities=16% Similarity=0.289 Sum_probs=133.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
.++|||+|||.++|+++|+++|+.|+.+....+... + .+|||||+|.+.++|.+|++.|+|..+. |+.|+|.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ---TKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC---CceEEEEe
Confidence 589999999999999999999999943332222221 1 2499999999999999999999999998 79999999
Q ss_pred cccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (320)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
+.......
T Consensus 79 ~~~~~~~~------------------------------------------------------------------------ 86 (167)
T 1fxl_A 79 ARPSSASI------------------------------------------------------------------------ 86 (167)
T ss_dssp CCCCCGGG------------------------------------------------------------------------
T ss_pred cCCCcccC------------------------------------------------------------------------
Confidence 85432110
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHH
Q 020917 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHN 280 (320)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~ 280 (320)
..++|||+|||.++++++|+++|++||.|.++++..+. .+|+|||+|.+.++|.+|++.
T Consensus 87 -----------------~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 87 -----------------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp -----------------TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred -----------------CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Confidence 25789999999999999999999999999999998754 279999999999999999999
Q ss_pred hCCCeeCCCCCceeEEEee
Q 020917 281 LQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 281 lnG~~l~g~~~~~l~v~~a 299 (320)
|||..|.|. ..+|+|.||
T Consensus 150 l~g~~~~g~-~~~i~v~~A 167 (167)
T 1fxl_A 150 LNGQKPSGA-TEPITVKFA 167 (167)
T ss_dssp HTTCCCTTC-SSCCEEEEC
T ss_pred hcCCccCCC-ccceEEEeC
Confidence 999999982 125999986
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=9.6e-33 Score=230.26 Aligned_cols=162 Identities=20% Similarity=0.219 Sum_probs=136.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..+.++|||+|||.++|+++|+++|+.|+.+.+.++.. ...+|||||+|.+.++|.+|++ |||..+. |+.|+|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~---g~~l~v 85 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF---GNEIKL 85 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEET---TEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeC---CeEEEE
Confidence 35689999999999999999999999996666633222 2457999999999999999995 9999998 899999
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
.++..+....
T Consensus 86 ~~~~~~~~~~---------------------------------------------------------------------- 95 (175)
T 1fje_B 86 EKPKGRDSKK---------------------------------------------------------------------- 95 (175)
T ss_dssp ECCCCSSCST----------------------------------------------------------------------
T ss_pred ecCCCccccc----------------------------------------------------------------------
Confidence 9986432100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (320)
..+.++|||+|||.++++++|+++|++||.|..+ ......+|||||+|.+.++|.+|++.||
T Consensus 96 -----------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 96 -----------------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp -----------------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred -----------------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 0126799999999999999999999999998877 2223348999999999999999999999
Q ss_pred CCeeCCCCCceeEEEeecCC
Q 020917 283 GAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 283 G~~l~g~~~~~l~v~~ak~~ 302 (320)
|..|.| +.|+|+|++.+
T Consensus 158 g~~~~g---~~i~v~~a~~k 174 (175)
T 1fje_B 158 GAEIDG---RSVSLYYTGEK 174 (175)
T ss_dssp EEEETT---EEEEEEECSSC
T ss_pred CCEECC---eEEEEEecCCC
Confidence 999999 99999999865
No 12
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=6.7e-32 Score=229.78 Aligned_cols=189 Identities=19% Similarity=0.254 Sum_probs=140.9
Q ss_pred cceEEEcCCCC-CCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 49 VRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 49 ~~~L~V~nLp~-~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
+++|||+|||. ++|+++|+++|+.| |.|..+ ...+|||||+|.+.++|.+|++.|||..+. |+.|+|.|
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~----G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVY----GDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH---GKPIRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTT----CCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCS---SCCCEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeec---CeEEEEEE
Confidence 58999999999 99999999999999 555332 233699999999999999999999999998 89999999
Q ss_pred cccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (320)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
++............... ..+ ++ . ..... ....
T Consensus 76 a~~~~~~~~~~~~~~~~--~~~------~~-----~------~~~~~-----r~~~------------------------ 107 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQG--LTK------DY-----G------NSPLH-----RFKK------------------------ 107 (198)
T ss_dssp CCCCSCCCSSSSSSSSS--CEE------ES-----S------CCCTT-----SSSS------------------------
T ss_pred ecCCCcCCCCcCCcccc--ccc------cc-----c------CCchh-----hccC------------------------
Confidence 97654321100000000 000 00 0 00000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCC
Q 020917 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG 283 (320)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG 283 (320)
+ .........+++++|||+|||.++++++|+++|++|| .|.+++++. .++|+|||+|.+.++|.+|++.|||
T Consensus 108 ---~---~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~-~~~g~afV~f~~~~~A~~A~~~l~g 180 (198)
T 1qm9_A 108 ---P---GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDLHN 180 (198)
T ss_dssp ---C---CCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS-TTSSCEEEECSSHHHHHHHHHHHTS
T ss_pred ---c---cccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe-CCCcEEEEEeCCHHHHHHHHHHhcC
Confidence 0 0000111234589999999999999999999999999 999999975 3579999999999999999999999
Q ss_pred CeeC-CCCCceeEEEeecCC
Q 020917 284 AVIP-SSGSVGMRIQYSKNP 302 (320)
Q Consensus 284 ~~l~-g~~~~~l~v~~ak~~ 302 (320)
..|. | +.|+|.|++++
T Consensus 181 ~~~~~g---~~l~v~~a~~~ 197 (198)
T 1qm9_A 181 HDLGEN---HHLRVSFSKST 197 (198)
T ss_dssp SCCSSC---CSCCEEEECCC
T ss_pred CccCCC---CeEEEEeeccc
Confidence 9999 7 89999999876
No 13
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.1e-31 Score=231.00 Aligned_cols=172 Identities=11% Similarity=0.228 Sum_probs=139.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.|+|..|. |+.|+|
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~l~v 102 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG---GRNIKV 102 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC----CCCEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC---CeeEEE
Confidence 34789999999999999999999999943333222221 24699999999999999999999999998 899999
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
.++......... .....
T Consensus 103 ~~~~~~~~~~~~-------~~~~~-------------------------------------------------------- 119 (216)
T 2qfj_A 103 GRPSNIGQAQPI-------IDQLA-------------------------------------------------------- 119 (216)
T ss_dssp ECCSCCGGGHHH-------HHHHH--------------------------------------------------------
T ss_pred ecCCCccccchh-------hhhhh--------------------------------------------------------
Confidence 887654321100 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHH
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVH 278 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al 278 (320)
......++|||+||+.++++++|+++|++||.|.++++.++.. +|||||+|.+.++|.+|+
T Consensus 120 ---------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 120 ---------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp ---------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred ---------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 0001368999999999999999999999999999999987632 799999999999999999
Q ss_pred HHhCCCeeCCCCCceeEEEeecCC
Q 020917 279 HNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 279 ~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
+.|||..|.| +.|+|.|++.+
T Consensus 185 ~~l~g~~~~g---~~i~V~~a~~~ 205 (216)
T 2qfj_A 185 SSMNLFDLGG---QYLRVGKAVTP 205 (216)
T ss_dssp HHHTTCBCSS---SBCEEEECSSC
T ss_pred HHccCCEeCC---cEEEEEEecCC
Confidence 9999999999 99999999988
No 14
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.2e-31 Score=227.44 Aligned_cols=170 Identities=16% Similarity=0.275 Sum_probs=133.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---C-CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~-~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... + .+|||||+|.+.++|.+|++. +|..+. |+.|.|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~---g~~l~v 86 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD---GRVVEP 86 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET---TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC---CEEeee
Confidence 56899999999999999999999999944433333321 1 359999999999999999984 899998 899999
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
.++.......+
T Consensus 87 ~~~~~~~~~~~--------------------------------------------------------------------- 97 (196)
T 1l3k_A 87 KRAVSREDSQR--------------------------------------------------------------------- 97 (196)
T ss_dssp EECCC---------------------------------------------------------------------------
T ss_pred ecccCcccccc---------------------------------------------------------------------
Confidence 99864322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHH
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVH 278 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al 278 (320)
.....+.++|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|.+|+
T Consensus 98 --------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 98 --------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp -------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred --------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 00011358999999999999999999999999999999987642 799999999999999999
Q ss_pred HHhCCCeeCCCCCceeEEEeecCCCCCCC
Q 020917 279 HNLQGAVIPSSGSVGMRIQYSKNPFGKRK 307 (320)
Q Consensus 279 ~~lnG~~l~g~~~~~l~v~~ak~~~~~~~ 307 (320)
.. +|..|.| +.|+|.|+..+-..+.
T Consensus 164 ~~-~~~~~~G---~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 164 IQ-KYHTVNG---HNCEVRKALSKQEMAS 188 (196)
T ss_dssp HC-SCCEETT---EECEEEECC-------
T ss_pred Hh-CCcEECC---EEEEEEecCChhHhcc
Confidence 86 8999999 9999999988744433
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=3.3e-31 Score=219.05 Aligned_cols=153 Identities=16% Similarity=0.272 Sum_probs=130.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCe
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~ 119 (320)
+.++|||+|||.++|+++|+++|+.| |.|..++ .++|||||+|.+.++|.+|++. +..+. |+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~---g~~ 72 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKY----GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILD---GKV 72 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTT----CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEET---TEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccC---CeE
Confidence 57899999999999999999999999 5553331 2359999999999999999984 56676 799
Q ss_pred EEEEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 120 LHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQM 199 (320)
Q Consensus 120 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (320)
|.|.++..+....
T Consensus 73 i~v~~~~~~~~~~------------------------------------------------------------------- 85 (167)
T 2cjk_A 73 IDPKRAIPRDEQD------------------------------------------------------------------- 85 (167)
T ss_dssp CCCEECCCHHHHH-------------------------------------------------------------------
T ss_pred cccccccchhhcc-------------------------------------------------------------------
Confidence 9888875432110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHH
Q 020917 200 PAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSAS 275 (320)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~ 275 (320)
+.++|||+|||.++++++|+++|++||.|.++++..+. .+|||||+|.+.++|.
T Consensus 86 ----------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 143 (167)
T 2cjk_A 86 ----------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 143 (167)
T ss_dssp ----------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHH
T ss_pred ----------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 14689999999999999999999999999999998653 2789999999999999
Q ss_pred HHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 276 SVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 276 ~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
+|++ |||..|.| +.|+|.|++++
T Consensus 144 ~A~~-~~~~~~~g---~~i~V~~a~pk 166 (167)
T 2cjk_A 144 RVCQ-NKFIDFKD---RKIEIKRAEPR 166 (167)
T ss_dssp HHHH-CSEECSSS---SCEEEEECCCC
T ss_pred HHHh-CCCEEeCC---eEEEEeecCCC
Confidence 9998 99999999 99999999875
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=2.2e-29 Score=223.68 Aligned_cols=156 Identities=21% Similarity=0.286 Sum_probs=134.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
.+.++|||+|||.++|+++|+++|+.|+.+.. +.+..++|||||+|.+.++|.+|++.|||..+. |+.|+|.|+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSE--VFINRDRGFGFIRLESRTLAEIAKAELDGTILK---SRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSE--EEEETTTTEEEEECSSHHHHHHHHHHHTTCEET---TEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--EEEeCCCcEEEEEECCHHHHHHHHHHcCCcEEC---CceeEeeecc
Confidence 56789999999999999999999999944332 333456899999999999999999999999998 8999999883
Q ss_pred cccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 127 KNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVP 206 (320)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (320)
+
T Consensus 95 ~------------------------------------------------------------------------------- 95 (261)
T 3sde_A 95 H------------------------------------------------------------------------------- 95 (261)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhC-
Q 020917 207 APSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQ- 282 (320)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~ln- 282 (320)
.++|||+||+..+|+++|+++|++||.|.+|+++.+.+ +|||||+|.+.++|.+|+..||
T Consensus 96 ----------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 96 ----------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp ----------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ----------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 46799999999999999999999999999999987643 7999999999999999999995
Q ss_pred CCeeCCCCCceeEEEeecCC
Q 020917 283 GAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 283 G~~l~g~~~~~l~v~~ak~~ 302 (320)
|..+.+...++|.|.|++..
T Consensus 160 ~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 160 GAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp SCEESSSSCCBCEEEECCCE
T ss_pred CeEEecCCCceEEEeecccc
Confidence 55554222289999998765
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.5e-29 Score=225.72 Aligned_cols=164 Identities=15% Similarity=0.204 Sum_probs=138.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
..++|||+|||.++|+++|+++|+.|+.+....+... + .+|||||+|.+.++|.+|++.|+|..+. |+.|+|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~i~v~ 170 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG---PRTLYVH 170 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEEE
Confidence 4579999999999999999999999944433333221 1 3599999999999999999999999998 8999999
Q ss_pred EcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 124 MAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (320)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (320)
|+..+....
T Consensus 171 ~a~~~~~~~----------------------------------------------------------------------- 179 (284)
T 3smz_A 171 WTDAGQLTP----------------------------------------------------------------------- 179 (284)
T ss_dssp ECCGGGCCT-----------------------------------------------------------------------
T ss_pred ECCCCCCCc-----------------------------------------------------------------------
Confidence 996432100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCC-CHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHH
Q 020917 204 PVPAPSSYVPVQNTKDNPPCNTLFIGNLGESI-NEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHH 279 (320)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~-tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~ 279 (320)
...+.++|||+|||.++ ++++|+++|++||.|.+++|.++.+ +|+|||+|.+.++|.+|+.
T Consensus 180 ---------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~ 244 (284)
T 3smz_A 180 ---------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQ 244 (284)
T ss_dssp ---------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHH
T ss_pred ---------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHH
Confidence 00136889999999995 9999999999999999999987533 7999999999999999999
Q ss_pred HhCCCeeCCCCCceeEEEeecCCC
Q 020917 280 NLQGAVIPSSGSVGMRIQYSKNPF 303 (320)
Q Consensus 280 ~lnG~~l~g~~~~~l~v~~ak~~~ 303 (320)
.|||..|.| +.|+|.|++.+-
T Consensus 245 ~l~g~~~~g---~~l~v~~a~~~~ 265 (284)
T 3smz_A 245 QADGLSLGG---SHLRVSFCAPGP 265 (284)
T ss_dssp HHTTCEETT---EECEEEECCSSS
T ss_pred HhCCCccCC---eEEEEEEecCCC
Confidence 999999999 999999998773
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.6e-29 Score=227.93 Aligned_cols=166 Identities=14% Similarity=0.248 Sum_probs=136.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCC-CccccEEEe-e--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLP-GYEASQVNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~-~~~~~iv~~-~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
..++|||+|||..+|+++|+++|+.|+ .+....+.. + ..+|||||+|.+.++|.+|++.|+|..+. |+.|+|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIE---GYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEEE
Confidence 478999999999999999999999994 333322221 1 24699999999999999999999999998 8999999
Q ss_pred EcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 124 MAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (320)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (320)
|+.......+.
T Consensus 193 ~a~~~~~~~~~--------------------------------------------------------------------- 203 (292)
T 2ghp_A 193 VSNPLEKSKRT--------------------------------------------------------------------- 203 (292)
T ss_dssp ECCCC---------------------------------------------------------------------------
T ss_pred ECCCCcccccc---------------------------------------------------------------------
Confidence 99754322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEeCCCCC-CCHHHHHHhhccCCCeeEEEEEecCC-----cceEEEEEcCHHHHHHH
Q 020917 204 PVPAPSSYVPVQNTKDNPPCNTLFIGNLGES-INEEELRGLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNSASSV 277 (320)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~-~tee~L~~~F~~~G~i~~v~i~~~~~-----~g~aFV~F~~~~~A~~A 277 (320)
.....+.++|||+|||.+ +++++|+++|++||.|.+|+++++.. +|||||+|.+.++|.+|
T Consensus 204 -------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A 270 (292)
T 2ghp_A 204 -------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 270 (292)
T ss_dssp ----------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHH
T ss_pred -------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHH
Confidence 000113689999999999 99999999999999999999986532 79999999999999999
Q ss_pred HHHhCCCeeCCCCCceeEEEeecCC
Q 020917 278 HHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 278 l~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
+ .|||..|.| +.|+|.|++++
T Consensus 271 ~-~l~g~~~~g---~~i~V~~a~~k 291 (292)
T 2ghp_A 271 L-QMNRSLLGN---REISVSLADKK 291 (292)
T ss_dssp G-GGTTEEETT---EEEEEEECCCC
T ss_pred H-HhcCCEECC---cEEEEEEecCC
Confidence 9 999999999 99999999875
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=6e-29 Score=223.25 Aligned_cols=149 Identities=21% Similarity=0.303 Sum_probs=134.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEE--eeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN--YKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~--~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
+.++|||+|||.++|+++|+++|+.| | |+. +...+|||||+|.+.++|.+|++.|||..+. |+.|+|.|+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~i~v~~~ 92 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDY----E-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLR---ERELSVQLQ 92 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTS----C-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET---TEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc----C-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeC---CeEEEEEec
Confidence 57899999999999999999999999 5 433 3556799999999999999999999999998 799999875
Q ss_pred ccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 126 KKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPV 205 (320)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (320)
.
T Consensus 93 ~------------------------------------------------------------------------------- 93 (284)
T 3smz_A 93 P------------------------------------------------------------------------------- 93 (284)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHh
Q 020917 206 PAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNL 281 (320)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~l 281 (320)
..++|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|.+|+..|
T Consensus 94 ----------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 157 (284)
T 3smz_A 94 ----------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDL 157 (284)
T ss_dssp ----------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ----------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 146899999999999999999999999999999986542 789999999999999999999
Q ss_pred CCCeeCCCCCceeEEEeecCC
Q 020917 282 QGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 282 nG~~l~g~~~~~l~v~~ak~~ 302 (320)
||..|.| +.|+|.|++.+
T Consensus 158 ~~~~~~g---~~i~v~~a~~~ 175 (284)
T 3smz_A 158 LGKPLGP---RTLYVHWTDAG 175 (284)
T ss_dssp TTCEETT---EECEEEECCGG
T ss_pred CCCEeCC---cEEEEEECCCC
Confidence 9999999 99999999766
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.1e-28 Score=222.54 Aligned_cols=154 Identities=14% Similarity=0.166 Sum_probs=130.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+.. .+++|||||+|.+.++|.+|++ ++|..+. |+.|.|.
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~---g~~i~v~ 113 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVG---QNEIIVS 113 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEET---TEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeC---CcEEEEE
Confidence 45689999999999999999999999994333322222 1347999999999999999996 9999998 7999998
Q ss_pred EcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 124 MAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (320)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (320)
++.
T Consensus 114 ~~~----------------------------------------------------------------------------- 116 (292)
T 2ghp_A 114 HLT----------------------------------------------------------------------------- 116 (292)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ECC-----------------------------------------------------------------------------
Confidence 751
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEecC---CcceEEEEEcCHHHHHHHHH
Q 020917 204 PVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQE---RHTVCFIEFEDVNSASSVHH 279 (320)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G-~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~ 279 (320)
.++|||+|||.++++++|+++|++|| .|.+++++++. .+|||||+|.+.++|.+|+.
T Consensus 117 -------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 117 -------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp -------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHH
T ss_pred -------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999999 99999997654 48999999999999999999
Q ss_pred HhCCCeeCCCCCceeEEEeecCC
Q 020917 280 NLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 280 ~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
.|||..|.| +.|+|.|+...
T Consensus 178 ~l~g~~~~g---~~l~v~~a~~~ 197 (292)
T 2ghp_A 178 KLNGLKIEG---YTLVTKVSNPL 197 (292)
T ss_dssp HHTTCEETT---EECEEEECCCC
T ss_pred HhCCCEeCC---cEEEEEECCCC
Confidence 999999999 99999999866
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=1.5e-23 Score=170.61 Aligned_cols=136 Identities=21% Similarity=0.233 Sum_probs=110.2
Q ss_pred CcceEEEEeCCHHHHHHHHHHh-cCceeCcCCCCeEEEEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCC
Q 020917 86 EKPMGFALFSTAQLAVAAKDAL-QEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSP 164 (320)
Q Consensus 86 ~kg~aFV~F~~~e~A~~A~~~l-ng~~~~~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (320)
.+|+++|+|.+.++|++|++.+ ||..++ | .|.+.++..+....... . . .
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~---G-~~~~~~a~~~~~~~~~~----~----------------~--~---- 61 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVD---G-EWTYDDATKTFTVTEGS----H----------------H--H---- 61 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCC---C-EEEEETTTTEEEEECSS----S----------------S--C----
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCC---C-ceecccccCcccccccc----c----------------c--c----
Confidence 4699999999999999999999 999998 8 99998875433211100 0 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhh
Q 020917 165 FHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLF 244 (320)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F 244 (320)
..........+.++|||+|||+++++++|+++|
T Consensus 62 -----------------------------------------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F 94 (150)
T 2i2y_A 62 -----------------------------------------------HHHMHRDSCPLDCKVYVGNLGNNGNKTELERAF 94 (150)
T ss_dssp -----------------------------------------------CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHH
T ss_pred -----------------------------------------------cccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 000001112247899999999999999999999
Q ss_pred ccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 245 SAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 245 ~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
++||.|.+|+++++ .+|||||+|.+.++|..|+..|||..|.| ++|+|+|++.+
T Consensus 95 ~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~~~ 148 (150)
T 2i2y_A 95 GYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCG---CRVRVELSNGE 148 (150)
T ss_dssp HHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSS---SCCEEEECCCC
T ss_pred HhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEcCCC
Confidence 99999999999864 58999999999999999999999999999 99999999876
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=1.8e-22 Score=165.54 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++++++|+++|++||.|.+|+|..+. .+|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 145 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---RELRVQ 145 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS---SEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEE
Confidence 36899999999999999999999999999999998653 38999999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++.+
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 99876
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=6.6e-21 Score=143.85 Aligned_cols=77 Identities=21% Similarity=0.413 Sum_probs=72.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.+++|||+|||.++|+++|+++|++||.|.+++++++.. +|||||+|.+.++|.+|++.|||..|.| ++|+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g---r~l~V~ 94 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS---KTIKVS 94 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 368999999999999999999999999999999987543 7899999999999999999999999999 999999
Q ss_pred eecC
Q 020917 298 YSKN 301 (320)
Q Consensus 298 ~ak~ 301 (320)
||++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9975
No 24
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.9e-20 Score=139.97 Aligned_cols=89 Identities=22% Similarity=0.440 Sum_probs=80.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC--cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
.+.++|||+|||.++++++|+++|++||.|.+|+|+++.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~ 89 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG---KEVKVNW 89 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT---EEEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC---CeEEEEE
Confidence 3579999999999999999999999999999999987543 7999999999999999999999999999 9999999
Q ss_pred ecCCCCCCCCCCCC
Q 020917 299 SKNPFGKRKDGTNG 312 (320)
Q Consensus 299 ak~~~~~~~~~~~~ 312 (320)
++.+-.++.+.++|
T Consensus 90 a~~~~~~~~~~~~G 103 (103)
T 2cqi_A 90 ATTPSSQKSGPSSG 103 (103)
T ss_dssp CCCTTCCCCCCCCC
T ss_pred CCCCcccccCCCCC
Confidence 99987766666554
No 25
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=140.43 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=72.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCe--eCCCCCceeEE
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAV--IPSSGSVGMRI 296 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~--l~g~~~~~l~v 296 (320)
..+|+++|||+|||+++|+++|+++|++||.|.++++++ .||||||+|.+.++|..|++.|||.. |.| ++|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G---r~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAG---HPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETT---EEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCC---cEEEE
Confidence 445789999999999999999999999999999999984 57999999999999999999999986 778 99999
Q ss_pred EeecCC
Q 020917 297 QYSKNP 302 (320)
Q Consensus 297 ~~ak~~ 302 (320)
+||+++
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999875
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=1.7e-20 Score=145.57 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=64.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
..+|||+|||+++|+++|+++|+.|+.+..+.|... ++||||||+|.+.++|++|++.|+|..|. |+.|+|.+++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~---g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN---DRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEEECC
Confidence 568999999999999999999999944433223222 24699999999999999999999999998 8999999986
Q ss_pred cc
Q 020917 127 KN 128 (320)
Q Consensus 127 ~~ 128 (320)
.+
T Consensus 82 ~~ 83 (115)
T 4f25_A 82 SR 83 (115)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 27
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=135.85 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=74.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHh--CCCeeCCCCCceeEEE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL--QGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~l--nG~~l~g~~~~~l~v~ 297 (320)
.+++++|||+|||+++++++|+++|++||.|.+|++++ +||||||+|.+.++|..|++.| ++..|.| ++|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G---r~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRN---QPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETT---EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECC---cEEEEE
Confidence 34689999999999999999999999999999999985 4899999999999999999987 5788999 999999
Q ss_pred eecCCCCCCC
Q 020917 298 YSKNPFGKRK 307 (320)
Q Consensus 298 ~ak~~~~~~~ 307 (320)
|++.+--+++
T Consensus 87 ~a~~~~~~~~ 96 (101)
T 2cq1_A 87 YSNHKELKTS 96 (101)
T ss_dssp ECSCSSCCCC
T ss_pred EcCcccCcCC
Confidence 9998744443
No 28
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.4e-20 Score=140.48 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=72.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC--CCeeCCCCCceeEEEe
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ--GAVIPSSGSVGMRIQY 298 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln--G~~l~g~~~~~l~v~~ 298 (320)
.+.++|||+|||+++|++||+++|++||.|.+|+|++ +||||||+|.+.++|..|++.|+ |..|.| ++|+|+|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G---r~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG---QPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEETT---EECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceECC---EEEEEEE
Confidence 3579999999999999999999999999999999986 47999999999999999999886 478999 9999999
Q ss_pred ecCCCC
Q 020917 299 SKNPFG 304 (320)
Q Consensus 299 ak~~~~ 304 (320)
++.+-.
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 988733
No 29
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=134.81 Aligned_cols=82 Identities=22% Similarity=0.381 Sum_probs=75.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
++++|||+|||.++++++|+++|++||.|.++++.++.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 80 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG---RPMRVG 80 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS---SCCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEE
Confidence 478999999999999999999999999999999987543 7899999999999999999999999999 999999
Q ss_pred eecCCCCCC
Q 020917 298 YSKNPFGKR 306 (320)
Q Consensus 298 ~ak~~~~~~ 306 (320)
|++.+...+
T Consensus 81 ~a~~~~~~~ 89 (95)
T 2dnz_A 81 HVTERLDGG 89 (95)
T ss_dssp ESSCCCCCC
T ss_pred EcccccCCC
Confidence 999884433
No 30
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.4e-19 Score=136.73 Aligned_cols=80 Identities=16% Similarity=0.339 Sum_probs=74.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC-cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
.+.++|||+|||.++++++|+++|++||.|.+|+|..+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG---YRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT---EECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEc
Confidence 3578999999999999999999999999999999976544 8999999999999999999999999999 99999999
Q ss_pred cCCC
Q 020917 300 KNPF 303 (320)
Q Consensus 300 k~~~ 303 (320)
+..-
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9873
No 31
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=8.5e-20 Score=141.62 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=73.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC--cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
.++|||+|||+++|+++|+++|++||.|.+|+|+++.+ +|||||+|.+.++|.+||+.|||..|.| +.|+|.|++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g---~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND---RKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT---EECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEECC
Confidence 57899999999999999999999999999999987655 7999999999999999999999999999 999999998
Q ss_pred CC
Q 020917 301 NP 302 (320)
Q Consensus 301 ~~ 302 (320)
.+
T Consensus 82 ~~ 83 (115)
T 4f25_A 82 SR 83 (115)
T ss_dssp CC
T ss_pred Cc
Confidence 76
No 32
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=136.88 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=73.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCC--eeCCCCCceeEEE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA--VIPSSGSVGMRIQ 297 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~--~l~g~~~~~l~v~ 297 (320)
.+++++|||+|||+++++++|+++|++||.|.+|++++ +||||||+|.+.++|.+|++.|||. .|.| ++|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G---r~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAG---QQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSS---SBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECC---EEEEEE
Confidence 34689999999999999999999999999999999985 4799999999999999999999765 4888 999999
Q ss_pred eecCCCCCC
Q 020917 298 YSKNPFGKR 306 (320)
Q Consensus 298 ~ak~~~~~~ 306 (320)
|++.+-.++
T Consensus 87 ~a~~~~~~~ 95 (104)
T 1wex_A 87 YSTSKRITR 95 (104)
T ss_dssp ECSSSSCCC
T ss_pred EccCccccC
Confidence 998874433
No 33
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=135.68 Aligned_cols=86 Identities=17% Similarity=0.326 Sum_probs=77.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEec--CCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ--ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~--~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
.+.++|||+|||.++++++|+++|++||.|.+|+|..+ ..+|||||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~ 89 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT---KPLYVAL 89 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS---SBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC---cEEEEEE
Confidence 35789999999999999999999999999999999876 338999999999999999999999999999 9999999
Q ss_pred ecCCCCCCCCC
Q 020917 299 SKNPFGKRKDG 309 (320)
Q Consensus 299 ak~~~~~~~~~ 309 (320)
++.+-.++...
T Consensus 90 a~~~~~~~~~~ 100 (103)
T 2d9p_A 90 AQRKEERQSGP 100 (103)
T ss_dssp CSSCCCCCCCC
T ss_pred ecccccCCCCC
Confidence 99884444433
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=139.22 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=73.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
++.++|||+||++++++++|+++|++||.|.+|+|+++.. +|||||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g---r~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG---NIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC---eEEEE
Confidence 3578999999999999999999999999999999987643 8999999999999999999999999999 99999
Q ss_pred EeecCC
Q 020917 297 QYSKNP 302 (320)
Q Consensus 297 ~~ak~~ 302 (320)
+|++..
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 998755
No 35
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-19 Score=134.39 Aligned_cols=84 Identities=17% Similarity=0.328 Sum_probs=76.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC--cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
..+.++|||+|||.++++++|+++|++||.|.+|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG---RKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 34579999999999999999999999999999999987544 8999999999999999999999999999 999999
Q ss_pred eecCCCCCC
Q 020917 298 YSKNPFGKR 306 (320)
Q Consensus 298 ~ak~~~~~~ 306 (320)
|++.+-.+.
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 998884433
No 36
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=132.95 Aligned_cols=79 Identities=27% Similarity=0.385 Sum_probs=73.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
.+.++|||+|||.++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..|.| +.|+|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG---VNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS---CBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC---cEEEEEECC
Confidence 357899999999999999999999999999999997 5899999999999999999999999999 899999999
Q ss_pred CCCCCC
Q 020917 301 NPFGKR 306 (320)
Q Consensus 301 ~~~~~~ 306 (320)
.+-..+
T Consensus 79 ~~~~~~ 84 (90)
T 2dnq_A 79 NKSKAS 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 884443
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=135.90 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=78.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
.+.++|||+|||.++++++|+++|++||.|.+|+++.+. .+|||||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 89 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG---KPIRV 89 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS---CBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC---eEEEE
Confidence 357899999999999999999999999999999998754 27899999999999999999999999999 99999
Q ss_pred EeecCCCCCCCCCCC
Q 020917 297 QYSKNPFGKRKDGTN 311 (320)
Q Consensus 297 ~~ak~~~~~~~~~~~ 311 (320)
.|++.+-.++..+.+
T Consensus 90 ~~a~~~~~~~~~~~~ 104 (105)
T 1x5u_A 90 NKASAHNKNLSGPSS 104 (105)
T ss_dssp EETTTTSCCCCCCCC
T ss_pred EECCCCCcCCCCCCC
Confidence 999988444444433
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-19 Score=134.43 Aligned_cols=82 Identities=24% Similarity=0.380 Sum_probs=74.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC-------CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCcee
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-------RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~-------~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l 294 (320)
++++|||+|||.++++++|+++|++||.|.+|++..+. .+|||||+|.+.++|.+|++.|||..|.| +.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 80 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG---HKL 80 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT---EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC---eEE
Confidence 57899999999999999999999999999999998643 26899999999999999999999999999 999
Q ss_pred EEEeecCCCCCC
Q 020917 295 RIQYSKNPFGKR 306 (320)
Q Consensus 295 ~v~~ak~~~~~~ 306 (320)
+|.|++.+...+
T Consensus 81 ~V~~a~~~~~~~ 92 (98)
T 2cpf_A 81 EVRISERATKPA 92 (98)
T ss_dssp EEECSSCSSCCC
T ss_pred EEEEccCCCCCC
Confidence 999998884443
No 39
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=6.5e-19 Score=136.49 Aligned_cols=83 Identities=18% Similarity=0.336 Sum_probs=75.6
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCcee
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l 294 (320)
..++.++|||+|||.++++++|+++|++||.|.+|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| +.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 97 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM---KRL 97 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT---EEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC---EEE
Confidence 334578999999999999999999999999999999987652 7899999999999999999999999999 999
Q ss_pred EEEeecCCCC
Q 020917 295 RIQYSKNPFG 304 (320)
Q Consensus 295 ~v~~ak~~~~ 304 (320)
+|+|++.+-.
T Consensus 98 ~V~~a~~~~~ 107 (115)
T 2cpz_A 98 KVQLKRSKND 107 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEEcCCCCc
Confidence 9999988733
No 40
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=139.20 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC--CCeeCCCCCceeEE
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ--GAVIPSSGSVGMRI 296 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln--G~~l~g~~~~~l~v 296 (320)
..+++++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.|+ |..|.| ++|+|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G---r~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG---QPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTT---BCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECC---eEEEE
Confidence 3446899999999999999999999999999999999864 7999999999999999999998 468999 99999
Q ss_pred EeecCCCCCCCC
Q 020917 297 QYSKNPFGKRKD 308 (320)
Q Consensus 297 ~~ak~~~~~~~~ 308 (320)
+|++.+--++..
T Consensus 102 ~~a~~k~~~~~~ 113 (119)
T 2ad9_A 102 QFSNHKELKTDS 113 (119)
T ss_dssp EECSSSSCCCCC
T ss_pred EEccCCCCCccc
Confidence 999888444433
No 41
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=136.31 Aligned_cols=87 Identities=20% Similarity=0.378 Sum_probs=78.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++++++|+++|++||.|.+|+++++. .+|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 87 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG---RQIRVD 87 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS---CCCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEE
Confidence 57899999999999999999999999999999998754 27899999999999999999999999999 999999
Q ss_pred eecCCCCCCCCCCC
Q 020917 298 YSKNPFGKRKDGTN 311 (320)
Q Consensus 298 ~ak~~~~~~~~~~~ 311 (320)
|++.+-.++....+
T Consensus 88 ~a~~~~~~~~~~~~ 101 (102)
T 1x5s_A 88 QAGKSSDNRSGPSS 101 (102)
T ss_dssp EEECCCCCCCCCCC
T ss_pred ECCCCCCCCCCCCC
Confidence 99988655554443
No 42
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=136.79 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=70.6
Q ss_pred CCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCC--eeCCCCCceeEEEe
Q 020917 222 PCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA--VIPSSGSVGMRIQY 298 (320)
Q Consensus 222 ~~~~LfV~NL~~-~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~--~l~g~~~~~l~v~~ 298 (320)
++++|||+|||+ +++++||+++|++||.|.+|+|++ ++|||||+|.+.++|..|++.|||. .|.| ++|+|+|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G---r~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFG---KPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETT---EECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCceECC---cEEEEEE
Confidence 579999999999 999999999999999999999985 4699999999999999999999875 5999 9999999
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
++..
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9865
No 43
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=138.07 Aligned_cols=78 Identities=17% Similarity=0.349 Sum_probs=70.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHh-CCCeeCCCCCceeEE
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNL-QGAVIPSSGSVGMRI 296 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G-~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~l-nG~~l~g~~~~~l~v 296 (320)
+++|||+|||.++||+||+++|++|| .|.+|+|+++. .+|||||+|.+.++|.+||+.| |+..|.| ++|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g---r~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG---QKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT---EEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC---EEEEE
Confidence 47899999999999999999999999 79999998653 3899999999999999999988 5668999 99999
Q ss_pred EeecCCC
Q 020917 297 QYSKNPF 303 (320)
Q Consensus 297 ~~ak~~~ 303 (320)
+|++++-
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9998773
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=5.9e-20 Score=137.35 Aligned_cols=77 Identities=13% Similarity=0.310 Sum_probs=69.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCC--eeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCC----eeCCCCCc
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPG--FKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGA----VIPSSGSV 292 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~--i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~----~l~g~~~~ 292 (320)
-+||||+|||+++|+++|+++|++||. |.+|+++++.. ||||||+|.+.++|.+|++.|||. .|.| |
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G---r 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG---K 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT---E
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC---E
Confidence 478999999999999999999999995 67899887543 899999999999999999999997 4889 9
Q ss_pred eeEEEeecCC
Q 020917 293 GMRIQYSKNP 302 (320)
Q Consensus 293 ~l~v~~ak~~ 302 (320)
+|+|+|||+.
T Consensus 86 ~i~V~~Akss 95 (95)
T 2lkz_A 86 TIGVDFAKSA 95 (95)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEccCC
Confidence 9999999874
No 45
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=132.78 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=74.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
.+.++|||+|||.++++++|+++|++||.|.+|+|+++. .+|||||+|.+.++|.+|++ |||..|.| +.|+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g---~~l~V 83 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG---KKVEV 83 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS---CBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC---eEEEE
Confidence 357899999999999999999999999999999998653 38999999999999999998 99999999 89999
Q ss_pred EeecCCCCCC
Q 020917 297 QYSKNPFGKR 306 (320)
Q Consensus 297 ~~ak~~~~~~ 306 (320)
.|++.+-.+.
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9999874433
No 46
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.8e-19 Score=136.50 Aligned_cols=86 Identities=16% Similarity=0.318 Sum_probs=77.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
...++|||+||+.++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG---HVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT---EECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC---cEEEEEecC
Confidence 35789999999999999999999999999999999864 7999999999999999999999999999 999999999
Q ss_pred CCCCCCCCCCC
Q 020917 301 NPFGKRKDGTN 311 (320)
Q Consensus 301 ~~~~~~~~~~~ 311 (320)
..-..+....+
T Consensus 98 ~~~~~~~~~~s 108 (109)
T 1x4g_A 98 ESPDMTSGPSS 108 (109)
T ss_dssp CCCSSCCCCCC
T ss_pred CCCCCCCCCCC
Confidence 88555544443
No 47
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9.4e-19 Score=131.88 Aligned_cols=79 Identities=23% Similarity=0.335 Sum_probs=73.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
..+.++|||+|||.++++++|+++|++||.|.+|++.+ ++|||||+|.+.++|.+|++.|||..|.| +.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRG---KQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTT---BCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCC---ceEEEEEc
Confidence 34578999999999999999999999999999999974 47999999999999999999999999999 99999999
Q ss_pred cCCC
Q 020917 300 KNPF 303 (320)
Q Consensus 300 k~~~ 303 (320)
+.+-
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8873
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=1.4e-18 Score=132.25 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=75.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.+.++|||+|||.++++++|+++|++||.|.+|+|+.+.+ +|||||+|.+.++|.+|++.|||..|.|...+.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4579999999999999999999999999999999987644 7999999999999999999999999987333699999
Q ss_pred eecCCC
Q 020917 298 YSKNPF 303 (320)
Q Consensus 298 ~ak~~~ 303 (320)
|++.+-
T Consensus 93 ~a~~~~ 98 (105)
T 2dnh_A 93 FADTDK 98 (105)
T ss_dssp ESCSSC
T ss_pred ECccCc
Confidence 999883
No 49
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.7e-19 Score=131.85 Aligned_cols=78 Identities=17% Similarity=0.425 Sum_probs=73.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeC--CCCCceeEEE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIP--SSGSVGMRIQ 297 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~--g~~~~~l~v~ 297 (320)
.+++++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|||..|. | +.|+|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g---~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPD---RRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSS---CBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCC---cEEEEE
Confidence 345789999999999999999999999999999999753 799999999999999999999999999 7 899999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++.+
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99887
No 50
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=132.38 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..+.++|||+|||.++++++|+++|++||.|.+|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH---LILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT---EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC---cEEE
Confidence 34579999999999999999999999999999999987642 7899999999999999999999999999 9999
Q ss_pred EEeecCC
Q 020917 296 IQYSKNP 302 (320)
Q Consensus 296 v~~ak~~ 302 (320)
|.|++.+
T Consensus 89 v~~a~~~ 95 (103)
T 2cq0_A 89 VEWAKPS 95 (103)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9999887
No 51
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.6e-19 Score=133.62 Aligned_cols=82 Identities=15% Similarity=0.295 Sum_probs=74.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC-----CcceEEEEEcCHHHHHHHHHHh-CCCeeCCCCCcee
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNL-QGAVIPSSGSVGM 294 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~-----~~g~aFV~F~~~~~A~~Al~~l-nG~~l~g~~~~~l 294 (320)
.+.++|||+|||.++++++|+++|++||.|.+|+|+++. .+|||||+|.+.++|.+|++.| ||..|.| +.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g---~~l 89 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG---RRL 89 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS---CBC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC---CEE
Confidence 357899999999999999999999999999999998652 2899999999999999999999 9999999 899
Q ss_pred EEEeecCCCCC
Q 020917 295 RIQYSKNPFGK 305 (320)
Q Consensus 295 ~v~~ak~~~~~ 305 (320)
+|+|++..-..
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999987433
No 52
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=4.1e-19 Score=129.86 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++++++|+++|++||.|.+++++++.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 82 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIRVN 82 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEE
Confidence 579999999999999999999999999999999976532 7999999999999999999999999999 999999
Q ss_pred eec
Q 020917 298 YSK 300 (320)
Q Consensus 298 ~ak 300 (320)
|+|
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 986
No 53
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=2e-18 Score=138.19 Aligned_cols=85 Identities=16% Similarity=0.297 Sum_probs=77.0
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCcee
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l 294 (320)
...+.++|||+||+.++++++|+++|++||.|.+|+|+++.. +|||||+|.+.++|.+|++.|||..|.| +.|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 114 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN---KRL 114 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS---CEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---eEE
Confidence 334578999999999999999999999999999999987653 8999999999999999999999999999 899
Q ss_pred EEEeecCCCCCC
Q 020917 295 RIQYSKNPFGKR 306 (320)
Q Consensus 295 ~v~~ak~~~~~~ 306 (320)
+|.|++.+-.++
T Consensus 115 ~v~~a~~~~~~~ 126 (139)
T 1u6f_A 115 KVALAASGHQRP 126 (139)
T ss_dssp EEEESSCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999999884433
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=131.23 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
++.++|||+|||.++++++|+++|++||.|.++++..+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v 90 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG---RVIKA 90 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT---EEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC---cEEEE
Confidence 4578999999999999999999999999999999986533 7899999999999999999999999999 99999
Q ss_pred Eeec
Q 020917 297 QYSK 300 (320)
Q Consensus 297 ~~ak 300 (320)
+|+|
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9986
No 55
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=131.37 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=73.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.+.++|||+|||.++++++|+++|++||.|.+++++.+.+ +|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 91 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE---NIIKVA 91 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS---CEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 4578999999999999999999999999999999987553 6999999999999999999999999999 899999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++.+
T Consensus 92 ~a~~~ 96 (100)
T 2do4_A 92 ISNSG 96 (100)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99887
No 56
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=133.09 Aligned_cols=80 Identities=24% Similarity=0.376 Sum_probs=73.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEE-EEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQM-KVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v-~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
++++|||+|||.++++++|+++|++||.|.++ +|+++.. +|||||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN---RPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT---EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC---EEEEE
Confidence 47899999999999999999999999999999 8876532 7999999999999999999999999999 99999
Q ss_pred EeecCCCC
Q 020917 297 QYSKNPFG 304 (320)
Q Consensus 297 ~~ak~~~~ 304 (320)
+|++.+-.
T Consensus 81 ~~a~~~~~ 88 (96)
T 1x5t_A 81 SYAFKKDS 88 (96)
T ss_dssp EESCCCCC
T ss_pred EEecccCC
Confidence 99988833
No 57
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=2.7e-19 Score=129.74 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=69.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
+.-|||+||++.+||++|+++|.+||.|.++++.. .||||||+|.+.++|.+|+++|||..|.| ++|+|.++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g---r~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLAN---TTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETT---EEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECC---cEEEEEECC
Confidence 57899999999999999999999999999999974 68999999999999999999999999999 999999984
No 58
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=8.1e-20 Score=145.79 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++++++|+++|++||.|.+|+|+.+. .+|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g---~~l~V~ 122 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG---RELRVQ 122 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS---SCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEE
Confidence 36889999999999999999999999999999998653 28899999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++..
T Consensus 123 ~a~~~ 127 (135)
T 2lea_A 123 MARYG 127 (135)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99876
No 59
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-19 Score=131.53 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=73.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..++++|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG---RRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---EEEE
Confidence 34578999999999999999999999999999999987543 7899999999999999999999999999 9999
Q ss_pred EEeecC
Q 020917 296 IQYSKN 301 (320)
Q Consensus 296 v~~ak~ 301 (320)
|+|+++
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999975
No 60
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.5e-19 Score=132.04 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=74.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
.+.++|||+|||.++++++|+++|++||.|.+|++..+. .+|||||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V 82 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG---RMLHV 82 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS---CEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC---cEEEE
Confidence 357899999999999999999999999999999998654 37999999999999999999999999999 99999
Q ss_pred EeecCCCC
Q 020917 297 QYSKNPFG 304 (320)
Q Consensus 297 ~~ak~~~~ 304 (320)
.|++.+-.
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99998833
No 61
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=130.11 Aligned_cols=78 Identities=14% Similarity=0.287 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG---RQIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEE
Confidence 468999999999999999999999999999999987642 7899999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++.+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99864
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=1.5e-18 Score=134.98 Aligned_cols=79 Identities=20% Similarity=0.362 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCcee
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l 294 (320)
...+.++|||+||+.++++++|+++|++||.|.+|+++++.. +|||||+|.+.++|.+|++.|||..|.| +.|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l 112 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT---KRL 112 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT---EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC---EEE
Confidence 344678999999999999999999999999999999986532 8999999999999999999999999999 999
Q ss_pred EEEeec
Q 020917 295 RIQYSK 300 (320)
Q Consensus 295 ~v~~ak 300 (320)
+|+|+|
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999986
No 63
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.3e-19 Score=133.44 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++++++|+++|++||.|.+|+|..+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~ 88 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG---RELRVQ 88 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT---BCCEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC---cEEEEE
Confidence 478999999999999999999999999999999986532 7999999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++..
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 99877
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=2.6e-18 Score=133.01 Aligned_cols=83 Identities=14% Similarity=0.278 Sum_probs=75.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
.+.++|||+|||.++++++|+++|++||.|.+|+|+++.. +|||||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V 89 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG---RQIRT 89 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT---EECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---EEEEE
Confidence 3578999999999999999999999999999999987643 7899999999999999999999999999 99999
Q ss_pred EeecCCCCCC
Q 020917 297 QYSKNPFGKR 306 (320)
Q Consensus 297 ~~ak~~~~~~ 306 (320)
.|++.+-..+
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9998774433
No 65
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=130.26 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=72.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccC--CCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQ--PGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~--G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
..++++|||+|||.++++++|+++|++| |.|.++++. +|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDG---SPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETT---EEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCC---cEEEEE
Confidence 3467999999999999999999999999 999999875 4899999999999999999999999999 999999
Q ss_pred eecCCCC
Q 020917 298 YSKNPFG 304 (320)
Q Consensus 298 ~ak~~~~ 304 (320)
|++.+-.
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9998743
No 66
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.7e-19 Score=129.96 Aligned_cols=77 Identities=18% Similarity=0.336 Sum_probs=71.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
.+.++|||+|||.++++++|+++|++||.|.++++.+ +||||+|.+.++|.+|++.|||..|.| +.|+|+|++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQG---KRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETT---EEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEEEcc
Confidence 3578999999999999999999999999999999974 699999999999999999999999999 999999998
Q ss_pred CCCC
Q 020917 301 NPFG 304 (320)
Q Consensus 301 ~~~~ 304 (320)
.+-.
T Consensus 81 ~~~~ 84 (92)
T 2dgt_A 81 SRLR 84 (92)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8733
No 67
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=5.2e-19 Score=132.50 Aligned_cols=78 Identities=27% Similarity=0.426 Sum_probs=73.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
|+++|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS---RFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEE
Confidence 468999999999999999999999999999999986532 8999999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++.+
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 99876
No 68
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-19 Score=133.44 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=74.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++++++|+++|++||.|.+|+|+.+. .+|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~ 87 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIRVN 87 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT---EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEE
Confidence 57899999999999999999999999999999997653 38999999999999999999999999999 999999
Q ss_pred eecCCCCC
Q 020917 298 YSKNPFGK 305 (320)
Q Consensus 298 ~ak~~~~~ 305 (320)
|++.+-.+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887333
No 69
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=129.19 Aligned_cols=78 Identities=17% Similarity=0.328 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC-----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~-----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
..++|||+|||.++++++|+++|++||.|.++++..+. .+|||||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG---QEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC---eEEEE
Confidence 35899999999999999999999999999999997655 47999999999999999999999999999 99999
Q ss_pred EeecCC
Q 020917 297 QYSKNP 302 (320)
Q Consensus 297 ~~ak~~ 302 (320)
+|++.+
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999876
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1e-18 Score=129.72 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=73.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC--cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
+.++|||+|||.++++++|+++|++||.|.++++.++.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a 83 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG---REIDVRID 83 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT---BCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEc
Confidence 578999999999999999999999999999999987432 7999999999999999999999999999 99999999
Q ss_pred cCCC
Q 020917 300 KNPF 303 (320)
Q Consensus 300 k~~~ 303 (320)
+.+-
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 9873
No 71
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=135.40 Aligned_cols=80 Identities=21% Similarity=0.436 Sum_probs=74.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
..++|||+|||.++++++|+++|++||.|.+|+|..+.+ +|||||+|.+.++|.+|++.|||..|.| +.|+|+|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g---~~l~V~~ 82 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG---KAIKVEQ 82 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS---SBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEEE
Confidence 468999999999999999999999999999999987542 7999999999999999999999999999 8999999
Q ss_pred ecCCCC
Q 020917 299 SKNPFG 304 (320)
Q Consensus 299 ak~~~~ 304 (320)
++.+-.
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 988743
No 72
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=132.82 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=75.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhC------CCeeCCCC
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQ------GAVIPSSG 290 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~ln------G~~l~g~~ 290 (320)
.++++|||+|||.++++++|+++|++||.|.+|+|+.+. .+|||||+|.+.++|.+|++.|| |..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g-- 90 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG-- 90 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS--
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC--
Confidence 357899999999999999999999999999999998653 38999999999999999999999 999999
Q ss_pred CceeEEEeecCCCCCC
Q 020917 291 SVGMRIQYSKNPFGKR 306 (320)
Q Consensus 291 ~~~l~v~~ak~~~~~~ 306 (320)
+.|+|.|++.+-...
T Consensus 91 -~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 -RQLKVDLAVTRDEAA 105 (111)
T ss_dssp -CEEEEECCCCCCCCC
T ss_pred -EEEEEEECCCCccCC
Confidence 999999998874433
No 73
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4.7e-18 Score=131.29 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=73.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.++++|||+||+.++++++|+++|++||.|.+|+|+.+.+ +|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 89 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD---RPMHVK 89 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC---CEEEEE
Confidence 4578999999999999999999999999999999987654 7899999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 99765
No 74
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=9.8e-19 Score=127.21 Aligned_cols=76 Identities=22% Similarity=0.451 Sum_probs=71.6
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
.+|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+|+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG---RPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT---EECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC---cEEEEEec
Confidence 5899999999999999999999999999999987633 8999999999999999999999999999 99999999
Q ss_pred cCC
Q 020917 300 KNP 302 (320)
Q Consensus 300 k~~ 302 (320)
+.+
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 875
No 75
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.1e-19 Score=131.55 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=72.9
Q ss_pred CCCeEEEeCCCCCCCHHHHH----HhhccCCCeeEEEEEecCC-cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 222 PCNTLFIGNLGESINEEELR----GLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~----~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
..++|||+|||.++++++|+ ++|++||.|.+|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g---r~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS---KKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT---EEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC---eEEEE
Confidence 46899999999999999999 9999999999999986543 8999999999999999999999999999 99999
Q ss_pred EeecCC
Q 020917 297 QYSKNP 302 (320)
Q Consensus 297 ~~ak~~ 302 (320)
+|++.+
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 999876
No 76
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=8.9e-19 Score=133.62 Aligned_cols=81 Identities=17% Similarity=0.319 Sum_probs=73.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCee---CCCCCce
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVI---PSSGSVG 293 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l---~g~~~~~ 293 (320)
.+.++|||+|||.++++++|+++|++||.|.+|+++.+. .+|||||+|.+.++|.+|++.|||..+ .| +.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g---~~ 87 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN---RP 87 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS---SC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC---ce
Confidence 357899999999999999999999999999999998753 379999999999999999999999998 77 89
Q ss_pred eEEEeecCCCC
Q 020917 294 MRIQYSKNPFG 304 (320)
Q Consensus 294 l~v~~ak~~~~ 304 (320)
|+|.|++.+-.
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999998743
No 77
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=139.02 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=72.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHH----HhhccCCCeeEEEEEec-CCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 221 PPCNTLFIGNLGESINEEELR----GLFSAQPGFKQMKVLRQ-ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~----~~F~~~G~i~~v~i~~~-~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
.++++|||+||++.+++++|+ ++|++||.|.+|.+.+. ..+|||||+|.+.++|..|++.|||..|.| ++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g---r~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG---NPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT---SCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC---CEEE
Confidence 457899999999999999876 69999999999988653 348999999999999999999999999999 8999
Q ss_pred EEeecCC
Q 020917 296 IQYSKNP 302 (320)
Q Consensus 296 v~~ak~~ 302 (320)
|+|++.+
T Consensus 104 V~~a~~~ 110 (127)
T 2a3j_A 104 ITFSETP 110 (127)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999876
No 78
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=131.35 Aligned_cols=80 Identities=24% Similarity=0.402 Sum_probs=73.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC-----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~-----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
+.++|||+|||.++++++|+++|++|| |.+|+|+.+. .+|||||+|.+.++|.+|| .|||..|.| +.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V 88 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---KRIRV 88 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT---EECEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC---cEEEE
Confidence 468999999999999999999999999 9999998653 2789999999999999999 999999999 99999
Q ss_pred EeecCCCCCC
Q 020917 297 QYSKNPFGKR 306 (320)
Q Consensus 297 ~~ak~~~~~~ 306 (320)
+|++.+-.++
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9999884443
No 79
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=3e-18 Score=130.04 Aligned_cols=78 Identities=19% Similarity=0.488 Sum_probs=72.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++++++|+++|++|| |.+|+++.+.. +|||||+|.+.++|.+|+ .|||..|.| +.|+|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V~ 88 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD---RSLRVD 88 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT---EECEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC---eEEEEE
Confidence 578999999999999999999999996 99999987653 789999999999999999 899999999 999999
Q ss_pred eecCCCC
Q 020917 298 YSKNPFG 304 (320)
Q Consensus 298 ~ak~~~~ 304 (320)
|++.+-.
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9988733
No 80
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=132.69 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=71.3
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCC--CeeCCCCCceeEE
Q 020917 220 NPPCNTLFIGNLGES-INEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG--AVIPSSGSVGMRI 296 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~-~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG--~~l~g~~~~~l~v 296 (320)
..++++|||+|||++ ++++||+++|++||.|.+|+|++ .+|||||+|.+.++|..|++.||+ ..|.| ++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G---r~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQG---RCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSS---SCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECC---EEEEE
Confidence 446899999999998 99999999999999999999974 579999999999999999999865 56899 99999
Q ss_pred EeecCC
Q 020917 297 QYSKNP 302 (320)
Q Consensus 297 ~~ak~~ 302 (320)
+|++.+
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 999876
No 81
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=130.56 Aligned_cols=78 Identities=17% Similarity=0.338 Sum_probs=72.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
...++|||+|||.++++++|+++|++||.|. ++++.+..+|||||+|.+.++|.+|++.|||..|.| +.|+|+|++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT---DTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS---SCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEcC
Confidence 3478999999999999999999999999997 677777779999999999999999999999999999 899999998
Q ss_pred CC
Q 020917 301 NP 302 (320)
Q Consensus 301 ~~ 302 (320)
.+
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 82
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=130.75 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeE--------EEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCC
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQ--------MKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~--------v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~ 289 (320)
+.++|||+||+.++++++|+++|++||.|.+ ++++.+.. +|||||+|.+.++|.+|++.|||..|.|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g- 90 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG- 90 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC-
Confidence 5799999999999999999999999999999 99987643 7999999999999999999999999999
Q ss_pred CCceeEEEeec
Q 020917 290 GSVGMRIQYSK 300 (320)
Q Consensus 290 ~~~~l~v~~ak 300 (320)
+.|+|+||+
T Consensus 91 --~~l~V~~A~ 99 (99)
T 2la6_A 91 --NPIKVSFAT 99 (99)
T ss_dssp --SBCEEEECC
T ss_pred --cEEEEEecC
Confidence 899999985
No 83
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=133.62 Aligned_cols=81 Identities=9% Similarity=0.204 Sum_probs=74.2
Q ss_pred CCCeEEEeCCCCCCCHHHHH---HhhccCCCeeEEEEEecCC-------cceEEEEEcCHHHHHHHHHHhCCCeeCCCCC
Q 020917 222 PCNTLFIGNLGESINEEELR---GLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~---~~F~~~G~i~~v~i~~~~~-------~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~ 291 (320)
..++|||+|||.++++++|+ ++|++||.|.+|+++++.. +|||||+|.+.++|.+|++.|||..|.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g--- 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG--- 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC---
Confidence 46899999999999999999 9999999999999986542 4899999999999999999999999999
Q ss_pred ceeEEEeecCCCCC
Q 020917 292 VGMRIQYSKNPFGK 305 (320)
Q Consensus 292 ~~l~v~~ak~~~~~ 305 (320)
+.|+|+|++.+...
T Consensus 91 r~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 91 RTLKASLGTTKYCS 104 (111)
T ss_dssp EEEEEESCCCCSCS
T ss_pred EEEEEEeccccccc
Confidence 99999999988543
No 84
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-18 Score=132.41 Aligned_cols=85 Identities=14% Similarity=0.217 Sum_probs=75.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..+.++|||+|||.++++++|+++|++||.|.+|+|+++. .+|||||+|.+.++|.+|++.||+ .|.| +.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g---~~l~ 89 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG---RKAN 89 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT---EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC---EEEE
Confidence 3457999999999999999999999999999999998754 279999999999999999999999 8999 9999
Q ss_pred EEeecCCCCCCCC
Q 020917 296 IQYSKNPFGKRKD 308 (320)
Q Consensus 296 v~~ak~~~~~~~~ 308 (320)
|+|++.....+..
T Consensus 90 V~~a~~~~~~~~~ 102 (116)
T 2cqd_A 90 VNLAYLGAKPRSL 102 (116)
T ss_dssp EEESTTTCCCCCC
T ss_pred EEEcccCCCcccc
Confidence 9999776444433
No 85
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.2e-19 Score=134.41 Aligned_cols=80 Identities=18% Similarity=0.355 Sum_probs=74.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC--cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
....++|||+||+.++++++|+++|++||.|.++++..+.+ +|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG---RKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEE
Confidence 34578999999999999999999999999999999986543 8999999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++.+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99875
No 86
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=126.79 Aligned_cols=75 Identities=21% Similarity=0.481 Sum_probs=70.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHh-CCCeeCCCCCceeEEEee
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL-QGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~l-nG~~l~g~~~~~l~v~~a 299 (320)
.+.++|||+|||.++++++|+++|++||.|.++++.+ ++|||||+|.+.++|.+|++.| ||..|.| +.|+|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g---~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNG---RRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETT---EECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECC---CEEEEEec
Confidence 3578999999999999999999999999999999985 4799999999999999999999 9999999 99999998
Q ss_pred c
Q 020917 300 K 300 (320)
Q Consensus 300 k 300 (320)
|
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 87
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=128.37 Aligned_cols=75 Identities=20% Similarity=0.376 Sum_probs=71.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
.+.++|||+|||.++++++|+++|++||.|.++++++ +||||+|.+.++|.+|++.|||..|.| +.|+|+|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKG---KRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETT---EECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEECC
Confidence 3578999999999999999999999999999999974 699999999999999999999999999 999999998
Q ss_pred CC
Q 020917 301 NP 302 (320)
Q Consensus 301 ~~ 302 (320)
..
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 88
No 88
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=133.20 Aligned_cols=81 Identities=11% Similarity=0.252 Sum_probs=74.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCee--------EEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCC
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFK--------QMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~--------~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g 288 (320)
.+.++|||+|||.++++++|+++|++||.|. .|+|+.+.. +|||||+|.+.++|.+|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3579999999999999999999999999999 688886532 7899999999999999999999999999
Q ss_pred CCCceeEEEeecCCCC
Q 020917 289 SGSVGMRIQYSKNPFG 304 (320)
Q Consensus 289 ~~~~~l~v~~ak~~~~ 304 (320)
+.|+|.|++.+-.
T Consensus 93 ---~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 ---SKLKVSLARKKPP 105 (113)
T ss_dssp ---EECEEECSSCCCC
T ss_pred ---CEEEEEECCCCCC
Confidence 9999999998743
No 89
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=132.62 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=74.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
.++.++|||+|||..+++++|+++|++||.|.+|+++++.. +|||||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g---~~l~ 99 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG---RPMK 99 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS---SCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---EEEE
Confidence 34578999999999999999999999999999999987643 7999999999999999999999999999 9999
Q ss_pred EEeecCC
Q 020917 296 IQYSKNP 302 (320)
Q Consensus 296 v~~ak~~ 302 (320)
|+|++.+
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999876
No 90
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=131.51 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=75.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhcc-CCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCe-eCCCCCceeEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSA-QPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAV-IPSSGSVGMRI 296 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~-~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~-l~g~~~~~l~v 296 (320)
+.++|||+|||.++++++|+++|++ ||.|.+|+|+.+.+ +|||||+|.+.++|.+|++.|||.. |.| +.|+|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g---~~l~v 84 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS---KPVRL 84 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS---SCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC---EeEEE
Confidence 5789999999999999999999999 99999999987543 7999999999999999999999999 999 89999
Q ss_pred EeecCCCCCCCC
Q 020917 297 QYSKNPFGKRKD 308 (320)
Q Consensus 297 ~~ak~~~~~~~~ 308 (320)
+|++.+-.++..
T Consensus 85 ~~a~~~~~~~~~ 96 (104)
T 2dhg_A 85 SVAIPKASRVKP 96 (104)
T ss_dssp CBCCCCCSCCCC
T ss_pred EEccCCCcCCCC
Confidence 999887444433
No 91
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=130.10 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=72.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
+.++|||+|||.++++++|+++|++||.|.+|+|..+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+|
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~ 91 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG---RPINVSG 91 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT---EECEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC---CEEEEEE
Confidence 578999999999999999999999999999999987643 7899999999999999999999999999 9999999
Q ss_pred ecC
Q 020917 299 SKN 301 (320)
Q Consensus 299 ak~ 301 (320)
+++
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 975
No 92
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=2.5e-18 Score=130.51 Aligned_cols=79 Identities=27% Similarity=0.465 Sum_probs=72.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
.+.++|||+|||.++++++|+++|++||.|.+|++++ +||||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLEG---ENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEETT---EEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccCC---CEEEEEEcC
Confidence 3578999999999999999999999999999999973 799999999999999999999999999 999999998
Q ss_pred CCCCCC
Q 020917 301 NPFGKR 306 (320)
Q Consensus 301 ~~~~~~ 306 (320)
.+-.++
T Consensus 82 ~~~~~~ 87 (103)
T 2dgu_A 82 PPDQKR 87 (103)
T ss_dssp CCCCCC
T ss_pred CCcccc
Confidence 874433
No 93
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.3e-18 Score=133.34 Aligned_cols=77 Identities=26% Similarity=0.474 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
...+.++|||+||+.++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..|.| +.|+|+|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN---QPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT---EECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEE
Confidence 34457999999999999999999999999999999998 6999999999999999999999999999 9999999
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
++.+
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 9887
No 94
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1e-18 Score=132.16 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=71.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~ 301 (320)
.+++|||+||+.++++++|+++|++||.|.++++. ..+|||||+|.+.++|.+|+..|||..|.| +.|+|.|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQG---RNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETT---EECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEeccC
Confidence 46899999999999999999999999999999997 467999999999999999999999999999 9999999986
Q ss_pred C
Q 020917 302 P 302 (320)
Q Consensus 302 ~ 302 (320)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 95
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=133.79 Aligned_cols=84 Identities=21% Similarity=0.321 Sum_probs=75.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCe----eEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGF----KQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i----~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..++++|||+|||.++++++|+++|++||.| ..+++.....+|||||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG---KILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS---CBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC---cEEE
Confidence 3457999999999999999999999999998 67777755568999999999999999999999999999 8999
Q ss_pred EEeecCCCCCC
Q 020917 296 IQYSKNPFGKR 306 (320)
Q Consensus 296 v~~ak~~~~~~ 306 (320)
|+|++.+-.++
T Consensus 99 v~~a~~~~~~~ 109 (115)
T 2cpx_A 99 IEFGKNKKQRS 109 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEccCCCCCC
Confidence 99999884433
No 96
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=6.4e-19 Score=135.43 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=72.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
..++|||+|||+++++++|+++|++|| .|..+++.....+|||||+|.+.++|.+|++.|||..|.| +.|+|++++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G---r~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG---SVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT---EEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEECC
Confidence 467999999999999999999999999 8999999654568999999999999999999999999999 999999997
Q ss_pred CC
Q 020917 301 NP 302 (320)
Q Consensus 301 ~~ 302 (320)
.+
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 65
No 97
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=130.33 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=69.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEec---CCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ---ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~---~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.+.++|||+|||.++++++|+++|++||.| +++.+ ..+|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~ 86 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG---RAIRLE 86 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT---EEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC---eEEEEE
Confidence 357999999999999999999999999988 33332 238999999999999999999999999999 999999
Q ss_pred eecCCCC
Q 020917 298 YSKNPFG 304 (320)
Q Consensus 298 ~ak~~~~ 304 (320)
|++.+-.
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9998833
No 98
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=129.75 Aligned_cols=78 Identities=22% Similarity=0.508 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCee-EEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCce---
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFK-QMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG--- 293 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~-~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~--- 293 (320)
+.++|||+|||.++++++|+++|++||.|. +++++++.. +|||||+|.+.++|.+|++.|||..|.| +.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~~~~ 84 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG---ATPAK 84 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS---CSSCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC---CCcce
Confidence 579999999999999999999999999999 999987642 6999999999999999999999999999 77
Q ss_pred -eEEEeecCC
Q 020917 294 -MRIQYSKNP 302 (320)
Q Consensus 294 -l~v~~ak~~ 302 (320)
|+|+|++..
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999999876
No 99
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=2.8e-18 Score=128.87 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=71.3
Q ss_pred CCCCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 220 NPPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 220 ~~~~~~LfV~NL~~-~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
.+++++|||+||+. ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..|.| +.|+|+|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG---KKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT---EECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEEe
Confidence 34689999999998 99999999999999999999984 5999999999999999999999999999 9999999
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
++.+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9875
No 100
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=125.61 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=72.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
.++++|||+|| ++++++|+++|++||.|.+|++. ..+|||||+|.+.++|.+|++.|||..|.| +.|+|+|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES---VQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT---EEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEECC
Confidence 35789999996 89999999999999999999995 568999999999999999999999999999 999999998
Q ss_pred CCCCCCC
Q 020917 301 NPFGKRK 307 (320)
Q Consensus 301 ~~~~~~~ 307 (320)
.+-....
T Consensus 86 ~~~~~~~ 92 (97)
T 1x5p_A 86 KQPMLDS 92 (97)
T ss_dssp SCCCCCS
T ss_pred CCCCCCC
Confidence 8744333
No 101
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=3.5e-18 Score=131.27 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCCC-CCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 222 PCNTLFIGNLGES-INEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 222 ~~~~LfV~NL~~~-~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
.+++|||+||+.+ +++++|+++|++||.|.+|++ .+|||||+|.+.++|.+|++.|||..|.| +.|+|+|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAG---QTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETT---EECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEECC
Confidence 4689999999999 999999999999999999999 36999999999999999999999999999 999999998
Q ss_pred CCCCCCCC
Q 020917 301 NPFGKRKD 308 (320)
Q Consensus 301 ~~~~~~~~ 308 (320)
.+-..+..
T Consensus 99 ~~~~~~~~ 106 (110)
T 1wf1_A 99 EPKPDRSG 106 (110)
T ss_dssp CCCSCCCC
T ss_pred CCCCCCCC
Confidence 76444433
No 102
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=3.6e-18 Score=130.45 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=72.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.++++|||+|||.++++++|+++|++||.|.+|+|+.+.+ +|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 103 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG---RPMNIQ 103 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC---cEEEEE
Confidence 3578999999999999999999999999999999986643 7899999999999999999999999999 999999
Q ss_pred eecC
Q 020917 298 YSKN 301 (320)
Q Consensus 298 ~ak~ 301 (320)
|+++
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9864
No 103
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.7e-18 Score=129.69 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=71.6
Q ss_pred CCCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 221 PPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 221 ~~~~~LfV~NL~~-~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
+++++|||+|||. ++++++|+++|++||.|.++++. +|||||+|.+.++|..|++.|||..|.| +.|+|+|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFG---KKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBT---TTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCC---cEEEEEEc
Confidence 4588999999998 99999999999999999999995 5999999999999999999999999999 89999999
Q ss_pred cCCCCC
Q 020917 300 KNPFGK 305 (320)
Q Consensus 300 k~~~~~ 305 (320)
+..-..
T Consensus 81 ~~~~~~ 86 (96)
T 2kvi_A 81 SSNARP 86 (96)
T ss_dssp ECCCC-
T ss_pred CcCCCC
Confidence 877443
No 104
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=131.44 Aligned_cols=76 Identities=28% Similarity=0.423 Sum_probs=72.1
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCC
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPF 303 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~~ 303 (320)
++|||+|||.++++++|+++|++||.|.++++..+ .+|||||+|.+.++|.+|++.|||..|.| +.|+|+|++.+-
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICG---SRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSS---CCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECC---cEEEEEEccCCC
Confidence 47999999999999999999999999999999875 68999999999999999999999999999 899999998873
No 105
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=129.43 Aligned_cols=79 Identities=15% Similarity=0.233 Sum_probs=71.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
...++|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V 89 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS---RKVKL 89 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT---EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC---eEEEE
Confidence 3468999999999999999999999999998776665432 7999999999999999999999999999 99999
Q ss_pred EeecCC
Q 020917 297 QYSKNP 302 (320)
Q Consensus 297 ~~ak~~ 302 (320)
+|++.+
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 999876
No 106
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=131.07 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=73.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
++++|||+|||.++++++|+++|++||.|.+|++..+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~V~ 98 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG---QPISVD 98 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS---SBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC---cEEEEE
Confidence 478999999999999999999999999999999987643 7999999999999999999999999999 899999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++.+
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 99876
No 107
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=127.55 Aligned_cols=75 Identities=27% Similarity=0.451 Sum_probs=69.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCC-eeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCC-CeeCCCCCceeEEEee
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG-AVIPSSGSVGMRIQYS 299 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~-i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG-~~l~g~~~~~l~v~~a 299 (320)
+.++|||+|||.++++++|+++|++||. |..+.+. .+|||||+|.+.++|.+|++.||| ..|.| +.|+|+|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g---~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHG---KIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETT---EECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECC---EEEEEEEc
Confidence 4789999999999999999999999999 6666664 369999999999999999999999 99999 99999999
Q ss_pred cCC
Q 020917 300 KNP 302 (320)
Q Consensus 300 k~~ 302 (320)
+.+
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 887
No 108
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=2.6e-18 Score=135.91 Aligned_cols=81 Identities=20% Similarity=0.329 Sum_probs=74.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCcee
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l 294 (320)
...++++|||+|||.++++++|+++|++||.|.+|+++++. .+|||||+|.+.++|.+|++.|||..|.| +.|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g---~~l 118 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG---RRI 118 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS---SCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---EEE
Confidence 34468899999999999999999999999999999998653 38999999999999999999999999999 999
Q ss_pred EEEeecCC
Q 020917 295 RIQYSKNP 302 (320)
Q Consensus 295 ~v~~ak~~ 302 (320)
+|+|++.+
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99999876
No 109
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=129.77 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=65.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.++++|||+|||.++|+++|+++|+.|+.+....+.. + ..+|||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~---gr~l~V 93 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ---SKTIKV 93 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC---CEEEEE
Confidence 3467899999999999999999999994433322222 1 13599999999999999999999999998 899999
Q ss_pred EEccc
Q 020917 123 EMAKK 127 (320)
Q Consensus 123 ~~a~~ 127 (320)
+||++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99975
No 110
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.6e-18 Score=135.21 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=74.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
++++|||+|||.++++++|+++|++||.|.+|+|+.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 97 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG---QPISVD 97 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS---SBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC---eEEEEE
Confidence 478999999999999999999999999999999986532 8999999999999999999999999999 999999
Q ss_pred eecCCCCCC
Q 020917 298 YSKNPFGKR 306 (320)
Q Consensus 298 ~ak~~~~~~ 306 (320)
|++.+-.++
T Consensus 98 ~a~~~~~~~ 106 (126)
T 3ex7_B 98 WCFVRGPPK 106 (126)
T ss_dssp ESEESSSCC
T ss_pred EecCCCCCC
Confidence 998774433
No 111
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=7.1e-19 Score=130.21 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=66.9
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCC--CeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQP--GFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G--~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.+|||+||+.++++++|+++|++|| .|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g---r~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG---QNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS---CCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC---EEEEEE
Confidence 4799999999999999999999999 999999987642 7999999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
+++.+
T Consensus 79 ~~~~~ 83 (90)
T 3p5t_L 79 PSNKL 83 (90)
T ss_dssp CC---
T ss_pred ECCCC
Confidence 99877
No 112
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=125.17 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=66.0
Q ss_pred CCCCe-EEEeCCCCCCCHHH----HHHhhccCC-CeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCcee
Q 020917 221 PPCNT-LFIGNLGESINEEE----LRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (320)
Q Consensus 221 ~~~~~-LfV~NL~~~~tee~----L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l 294 (320)
+|+.| |||+|||+.+++++ |+++|++|| .|++| ..|+|||.|.+.++|.+|++.|||+.|.| |+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~g---r~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFG---NRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSS---SCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCC---ceE
Confidence 35677 99999999999988 558999995 99998 13999999999999999999999999999 999
Q ss_pred EEEeecCC
Q 020917 295 RIQYSKNP 302 (320)
Q Consensus 295 ~v~~ak~~ 302 (320)
+|+|++..
T Consensus 77 ~v~~A~~~ 84 (96)
T 2diu_A 77 IVSFTPKN 84 (96)
T ss_dssp EEESSCCS
T ss_pred EEEecCCC
Confidence 99999876
No 113
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-18 Score=129.30 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=75.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..+.++|||+|||.++++++|+++|++||.|.+|+|+++.. +|||||+|.+.++|.+||+. ||..|.| +.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g---~~l~ 88 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG---RNID 88 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT---EEEB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC---EEEE
Confidence 34579999999999999999999999999999999987643 78999999999999999998 9999999 9999
Q ss_pred EEeecCCCCCC
Q 020917 296 IQYSKNPFGKR 306 (320)
Q Consensus 296 v~~ak~~~~~~ 306 (320)
|.|++.+-...
T Consensus 89 V~~a~~~~~~~ 99 (105)
T 2dh8_A 89 PKPCTPRGMQP 99 (105)
T ss_dssp CCCSCCSSCCT
T ss_pred EEEccCCCCCC
Confidence 99998874433
No 114
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=3.6e-18 Score=131.15 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=73.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
++++|||+|||.++++++|+++|++||.|.+|++..+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 101 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG---QTIQVD 101 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC---cEEEEE
Confidence 478999999999999999999999999999999976532 7999999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++.+
T Consensus 102 ~a~~~ 106 (110)
T 1oo0_B 102 WCFVK 106 (110)
T ss_dssp ESEES
T ss_pred EcccC
Confidence 99876
No 115
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=1.9e-18 Score=129.53 Aligned_cols=79 Identities=33% Similarity=0.519 Sum_probs=72.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHH----HhhccCCCeeEEEEEec-CCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 221 PPCNTLFIGNLGESINEEELR----GLFSAQPGFKQMKVLRQ-ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~----~~F~~~G~i~~v~i~~~-~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
+++++|||+|||.++++++|+ ++|++||.|.+|++.+. ..+|||||+|.+.++|..|++.|||..|.| +.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD---KPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT---EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC---cEEE
Confidence 358999999999999999999 99999999999998742 237999999999999999999999999999 9999
Q ss_pred EEeecCC
Q 020917 296 IQYSKNP 302 (320)
Q Consensus 296 v~~ak~~ 302 (320)
|+|++.+
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999876
No 116
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=3.1e-18 Score=139.50 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=71.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
..+|||+||++.+|+++|+++|++||.|++|+|.....+|||||+|.+.++|..|++.|||+.|.|. ++.|+|+|+|.+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~-g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS-CSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC-CcEEEEEEecCC
Confidence 4568999999999999999999999999999998655688999999999999999999999999642 279999999987
No 117
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.7e-18 Score=127.46 Aligned_cols=78 Identities=19% Similarity=0.392 Sum_probs=68.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
.+.++|||+|||.++++++|+++|+.|+ .++++.+. .+|||||+|.+.++|.+||+.|||..|.| +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~V 86 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG---NKVTL 86 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT---EECEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC---eEEEE
Confidence 4578999999999999999999999885 45555443 27999999999999999999999999999 99999
Q ss_pred EeecCCCC
Q 020917 297 QYSKNPFG 304 (320)
Q Consensus 297 ~~ak~~~~ 304 (320)
+|++.+-.
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99998743
No 118
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=5.7e-18 Score=131.08 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC-cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
++++|||+|||.++++++|+++|++||.|.+|+++.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN---RYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS---CBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC---eEEEEEEec
Confidence 478999999999999999999999999999999986544 8999999999999999999999999999 899999997
Q ss_pred CC
Q 020917 301 NP 302 (320)
Q Consensus 301 ~~ 302 (320)
.+
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 119
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.8e-19 Score=127.89 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
++++|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~~~~~ 80 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA---QMAKQS 80 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE---ESCCSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee---EEEeec
Confidence 478999999999999999999999999999999987543 8999999999999999999999999999 899988
Q ss_pred eecC
Q 020917 298 YSKN 301 (320)
Q Consensus 298 ~ak~ 301 (320)
|+++
T Consensus 81 ~~~s 84 (85)
T 1x4e_A 81 GPSS 84 (85)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 120
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-18 Score=131.36 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=71.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
.++|||+|||.++++++|+++|++||.|.+|++.+ .+|||||+|.+.++|..|++.|||..|.| +.|+|+|++..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHH---VPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSS---SBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECC---eEEEEEECCCC
Confidence 67999999999999999999999999999999873 67999999999999999999999999999 89999999875
No 121
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=4.7e-18 Score=140.21 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=73.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
++++|||+|||..+++++|+++|++||.|..|+|+.+.. +|||||+|.+.++|..||..|||..|.| +.|+|.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 147 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG---QTIQVD 147 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 468999999999999999999999999999999987532 7999999999999999999999999999 999999
Q ss_pred eecCCCC
Q 020917 298 YSKNPFG 304 (320)
Q Consensus 298 ~ak~~~~ 304 (320)
|++.+-.
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9987633
No 122
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=8e-18 Score=124.02 Aligned_cols=76 Identities=17% Similarity=0.349 Sum_probs=71.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
.++|||+|||.++++++|+++|++||.|.++++..+.. +|||||+|.+.++|.+|+ .|||..|.| +.|+|+|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g---~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG---RQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT---EECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC---cEEEEEE
Confidence 57999999999999999999999999999999987642 889999999999999999 999999999 9999999
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
++.+
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 9875
No 123
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-17 Score=126.06 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=72.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCC-----Cc
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSG-----SV 292 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~-----~~ 292 (320)
.+.++|||+|||.++++++|+++|++||.|.+++|+.+.+ +|||||+|.+.++|.+|++.|||..|.+.. .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 3468999999999999999999999999999999987643 789999999999999999999999995311 17
Q ss_pred eeEEEeecCC
Q 020917 293 GMRIQYSKNP 302 (320)
Q Consensus 293 ~l~v~~ak~~ 302 (320)
+|+|.|++++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999966
No 124
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.5e-18 Score=128.43 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=69.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---r~l~v~ 90 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS---RKVKLS 90 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC---cEEEEE
Confidence 468999999999999999999999999998777765432 7999999999999999999999999999 999999
Q ss_pred eecC
Q 020917 298 YSKN 301 (320)
Q Consensus 298 ~ak~ 301 (320)
++++
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 9864
No 125
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=9e-18 Score=125.87 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=66.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCce--eCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMI--FDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~--~~~~~gr~l~v 122 (320)
.++++|||+|||+++|+++|+++|+.| |.|..+ -..||||||+|.+.++|.+|++.|+|.. +. ||+|+|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~f----G~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~---Gr~i~V 91 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEF----GPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIA---GHPAFV 91 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEET---TEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeC---CcEEEE
Confidence 468999999999999999999999999 666443 3468999999999999999999999876 55 899999
Q ss_pred EEcccc
Q 020917 123 EMAKKN 128 (320)
Q Consensus 123 ~~a~~~ 128 (320)
+|++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999765
No 126
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=1.7e-17 Score=135.58 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=74.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
.+.++|||+|||.++++++|+++|++||.|.+|+|+.+.. +|||||+|.+.++|.+||+.|||..|.| +.|+|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V 113 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD---RIIRT 113 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT---EECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEE
Confidence 4579999999999999999999999999999999987643 7899999999999999999999999999 99999
Q ss_pred EeecCCCC
Q 020917 297 QYSKNPFG 304 (320)
Q Consensus 297 ~~ak~~~~ 304 (320)
+|++.+-.
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987633
No 127
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.7e-18 Score=130.02 Aligned_cols=80 Identities=18% Similarity=0.109 Sum_probs=66.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcC--ceeCcCCCCeEEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQE--MIFDAETKSVLHTE 123 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng--~~~~~~~gr~l~v~ 123 (320)
..++++|||+|||+++||++|+++|+.|+.+.... +...||||||+|.+.++|.+|++.|++ ..+. |++|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~--i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~---Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLL--MLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLR---GQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEE--EEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBT---TBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--EeCCCCEEEEEECCHHHHHHHHHHhccCCceEC---CeEEEEE
Confidence 35689999999999999999999999994433222 223479999999999999999999884 5677 8999999
Q ss_pred Ecccccc
Q 020917 124 MAKKNLF 130 (320)
Q Consensus 124 ~a~~~~~ 130 (320)
|++.+..
T Consensus 103 ~a~~k~~ 109 (119)
T 2ad9_A 103 FSNHKEL 109 (119)
T ss_dssp ECSSSSC
T ss_pred EccCCCC
Confidence 9976543
No 128
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-17 Score=124.05 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=72.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
.+.++|||+|||.++++++|+++|++||.|.+|+|+.+.. +|||||+|.+.++|.+|++ ++..|.| +.|+|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g---~~l~v 87 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG---RWCDC 87 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT---EEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC---eEEEE
Confidence 3478999999999999999999999999999999987643 7899999999999999998 5779999 99999
Q ss_pred EeecCCCCCCC
Q 020917 297 QYSKNPFGKRK 307 (320)
Q Consensus 297 ~~ak~~~~~~~ 307 (320)
.|++.+-....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cqg_A 88 KLPNSKQSQDS 98 (103)
T ss_dssp ECCCTTCCCCC
T ss_pred EecCCCCcCCC
Confidence 99988744433
No 129
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=1.1e-17 Score=131.37 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=69.7
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcce-EEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTV-CFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~-aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
..|||+||++.+|+++|+++|++||.|.+|++.+. .+|| |||+|.+.++|..|++.|||+.|.| +++.|+|+|+|.+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHTTCEEET-TEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHcCCCeecC-CCcEEEEEecCCC
Confidence 45679999999999999999999999999999864 4677 9999999999999999999999987 3479999999876
No 130
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.7e-18 Score=128.22 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=73.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++++++|+++|++||.|.++++..+.. +|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG---RALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS---SCBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC---cEEEEE
Confidence 368999999999999999999999999999999987642 7999999999999999999999999999 899999
Q ss_pred eecCCC
Q 020917 298 YSKNPF 303 (320)
Q Consensus 298 ~ak~~~ 303 (320)
|++.+-
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 998873
No 131
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=128.47 Aligned_cols=77 Identities=10% Similarity=0.224 Sum_probs=71.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC---CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
..++|||+|||.++|+++|+++|++||.|.+|+|+++. .+|||||+|.+.++|..|+. +||..|.| +.|+|.|
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g---r~l~V~~ 85 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE---TDLLILF 85 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT---TTCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC---EEEEEEE
Confidence 46899999999999999999999999999999998754 38999999999999999998 99999999 8999999
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
++..
T Consensus 86 ~~~~ 89 (103)
T 1s79_A 86 KDDY 89 (103)
T ss_dssp HHHH
T ss_pred chHH
Confidence 7653
No 132
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=6.4e-17 Score=126.89 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=73.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC---CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.++++|||+||+.++++++|+++|++||.|.+|++..+. .+|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g---~~l~V~ 109 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG---RPMDIQ 109 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS---CEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC---cEEEEE
Confidence 457899999999999999999999999999999998754 37999999999999999999999999999 899999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|+...
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 99876
No 133
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.6e-17 Score=125.21 Aligned_cols=82 Identities=13% Similarity=0.117 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCC--CCceeEEEee
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS--GSVGMRIQYS 299 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~--~~~~l~v~~a 299 (320)
..++|||+|||.++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|.+||+.|||..|.|. ..+.|+|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 4789999999999999999999999999999999865 9999999999999999999999999871 1158999999
Q ss_pred cCCCCCC
Q 020917 300 KNPFGKR 306 (320)
Q Consensus 300 k~~~~~~ 306 (320)
+.+-..+
T Consensus 91 ~~~~~~~ 97 (108)
T 1x4c_A 91 GPRSPSY 97 (108)
T ss_dssp SCCSCCC
T ss_pred CCCCCCC
Confidence 8874433
No 134
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=124.71 Aligned_cols=79 Identities=10% Similarity=0.055 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
..++|||+|||+++|++||+++|++|| +++|+|+.+.+ +|||||+|.+.++|.+|| .+||..|.+ +.|+|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g---r~i~V~~ 88 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQH---RYVELFL 88 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSS---SCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECC---cEEEEEE
Confidence 468999999999999999999999999 55999987654 789999999999999999 589999999 8999999
Q ss_pred ecCCCCC
Q 020917 299 SKNPFGK 305 (320)
Q Consensus 299 ak~~~~~ 305 (320)
+..+-..
T Consensus 89 ~~~~~~~ 95 (102)
T 1wez_A 89 NSTAGTS 95 (102)
T ss_dssp ECCCCCC
T ss_pred CCCCCCC
Confidence 8877433
No 135
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=129.62 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=74.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++++++|+++|++||.|.+|+|+.+.. +|||||+|.+.++|.+||+. ||..|.| +.|+|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g---~~l~V~ 101 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG---RVVEPK 101 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT---EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC---EEEEEE
Confidence 468999999999999999999999999999999987543 79999999999999999987 9999999 999999
Q ss_pred eecCCCCCCC
Q 020917 298 YSKNPFGKRK 307 (320)
Q Consensus 298 ~ak~~~~~~~ 307 (320)
|++.+-..+.
T Consensus 102 ~a~~~~~~~~ 111 (116)
T 1x4b_A 102 RAVAREESGS 111 (116)
T ss_dssp CCSSCCCCCC
T ss_pred ECCCCccCCC
Confidence 9998844433
No 136
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=124.45 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=72.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEE-EEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMK-VLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~-i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
..++|||+|||.++++++|+++|++||.|.+++ ++.+...+.|||+|.+.++|..|++.|||..|.| +.|+|+|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN---FTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS---CBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEcC
Confidence 368999999999999999999999999999995 7766666779999999999999999999999999 999999998
Q ss_pred CC
Q 020917 301 NP 302 (320)
Q Consensus 301 ~~ 302 (320)
.+
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 87
No 137
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=3.5e-18 Score=129.10 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=72.3
Q ss_pred CCCeEEEeCCCC------CCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCC
Q 020917 222 PCNTLFIGNLGE------SINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (320)
Q Consensus 222 ~~~~LfV~NL~~------~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~ 291 (320)
.+++|||+|||. ++++++|+++|++||.|.+|+|+++.. +|||||+|.+.++|.+|++.|||..|.|+
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~-- 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK-- 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS--
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC--
Confidence 368999999999 999999999999999999999987653 79999999999999999999999999974
Q ss_pred ceeEEEeecCC
Q 020917 292 VGMRIQYSKNP 302 (320)
Q Consensus 292 ~~l~v~~ak~~ 302 (320)
+.|+|.|++..
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 79999998653
No 138
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.5e-18 Score=127.54 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=66.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcC--ceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQE--MIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng--~~~~~~~gr~l~v 122 (320)
.+.++|||+|||+++||++|+++|+.| |.|..+ ...||||||+|.+.++|++|++.|++ ..+. |++|+|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f----G~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~---Gr~l~V 86 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLR---GQPIYI 86 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH----CCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEET---TEECCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEEE
Confidence 347899999999999999999999999 666443 34589999999999999999998864 7787 899999
Q ss_pred EEcccccc
Q 020917 123 EMAKKNLF 130 (320)
Q Consensus 123 ~~a~~~~~ 130 (320)
+|++.+..
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99976543
No 139
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.4e-18 Score=129.69 Aligned_cols=77 Identities=21% Similarity=0.388 Sum_probs=71.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
..++|||+||+.++++++|+++|++||.|.+|+|+.+. .+|||||+|.+.++|.+|+ .|||..|.| +.|+|.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V~ 99 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG---VPIIVQ 99 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT---EEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC---eEEEEE
Confidence 36899999999999999999999999999999998644 2799999999999999999 999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++.+
T Consensus 100 ~a~~~ 104 (114)
T 2cq4_A 100 ASQAE 104 (114)
T ss_dssp EHHHH
T ss_pred ecCCC
Confidence 98765
No 140
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=128.45 Aligned_cols=80 Identities=14% Similarity=0.327 Sum_probs=68.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+... +.+|||||+|.+.++|++|++.|||..+. |+.|+|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE---GRKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEE
Confidence 356899999999999999999999999965554444332 24799999999999999999999999998 8999999
Q ss_pred Ecccc
Q 020917 124 MAKKN 128 (320)
Q Consensus 124 ~a~~~ 128 (320)
|++.+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99754
No 141
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=127.98 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=70.8
Q ss_pred CCCeEEEeCCCCCC------CHHHHHHhhccCCCeeEEEEEecC--CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCc-
Q 020917 222 PCNTLFIGNLGESI------NEEELRGLFSAQPGFKQMKVLRQE--RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV- 292 (320)
Q Consensus 222 ~~~~LfV~NL~~~~------tee~L~~~F~~~G~i~~v~i~~~~--~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~- 292 (320)
..++|||+|||..+ ++++|+++|++||.|.+|++.+.. .+|||||+|.+.++|.+|++.|||..|.| +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g---~~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK---QH 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST---TC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC---Cc
Confidence 46899999999999 789999999999999999997432 27999999999999999999999999999 7
Q ss_pred eeEEEeecCC
Q 020917 293 GMRIQYSKNP 302 (320)
Q Consensus 293 ~l~v~~ak~~ 302 (320)
.|+|+|+...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998754
No 142
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=3e-18 Score=129.41 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=69.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC-----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~-----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
..++|||+||+.++++++|+++|++|| |.+|+++++. .+|||||+|.+.++|.+|+ .|||..|.| +.|+|
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g---~~l~V 92 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---RRIRV 92 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT---BCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC---eEEEE
Confidence 479999999999999999999999999 9999998764 2899999999999999999 899999999 99999
Q ss_pred EeecCC
Q 020917 297 QYSKNP 302 (320)
Q Consensus 297 ~~ak~~ 302 (320)
+|++.+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999875
No 143
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.3e-18 Score=130.21 Aligned_cols=77 Identities=10% Similarity=0.263 Sum_probs=70.0
Q ss_pred CCCCeEEE--eCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCee-----CCCCCce
Q 020917 221 PPCNTLFI--GNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI-----PSSGSVG 293 (320)
Q Consensus 221 ~~~~~LfV--~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l-----~g~~~~~ 293 (320)
.|+++||| +||+.++++++|+++|++||.|.+|.+.. +||||||+|.+.++|.+|++.|||.+| .| ++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g---~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK---IT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE---EE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC---cE
Confidence 35789999 67999999999999999999999998863 589999999999999999999999998 45 89
Q ss_pred eEEEeecCC
Q 020917 294 MRIQYSKNP 302 (320)
Q Consensus 294 l~v~~ak~~ 302 (320)
|.|.|+++.
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999999765
No 144
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=127.50 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCcee
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l 294 (320)
...+.++|||+||+.++++++|+++|++||.|.+|+++++.. +|||||+|.+.++|.+|++.+ |..|.| +.|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g---~~l 96 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS---KTI 96 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT---EEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC---EEE
Confidence 344578999999999999999999999999999999987542 799999999999999999976 599999 999
Q ss_pred EEEeecCC
Q 020917 295 RIQYSKNP 302 (320)
Q Consensus 295 ~v~~ak~~ 302 (320)
+|.|++.+
T Consensus 97 ~V~~a~~~ 104 (109)
T 2rs2_A 97 DPKVAFPR 104 (109)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99999876
No 145
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=4.6e-18 Score=131.63 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
+++++|||+|||.++|+++|+++|+.|+.+....+.. ...+|||||+|.+.++|.+|++.|||..+. |+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS---NRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS---SCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEEe
Confidence 5688999999999999999999999994433322322 234699999999999999999999999998 899999999
Q ss_pred ccc
Q 020917 126 KKN 128 (320)
Q Consensus 126 ~~~ 128 (320)
+..
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 654
No 146
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=132.12 Aligned_cols=78 Identities=15% Similarity=0.354 Sum_probs=72.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeE--EEEEecC----CcceEEEEEcCHHHHHHHHHHhCCC----eeCCCC
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQ--MKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGA----VIPSSG 290 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~--v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~----~l~g~~ 290 (320)
.++++|||+||++++|+++|+++|++||.|.. |+|+++. .+|||||+|.+. +|.+|+..|||. .|.|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g-- 97 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG-- 97 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC--
Confidence 45789999999999999999999999999976 8998765 289999999999 999999999999 9999
Q ss_pred CceeEEEeecCC
Q 020917 291 SVGMRIQYSKNP 302 (320)
Q Consensus 291 ~~~l~v~~ak~~ 302 (320)
+.|+|.|++..
T Consensus 98 -r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 -KTINVEFAKGS 108 (131)
T ss_dssp -CCCCCEECCCS
T ss_pred -EEEEEEECCCC
Confidence 99999999876
No 147
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=1.9e-17 Score=124.28 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=67.9
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 47 DEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 47 ~~~~~L~V~nLp~-~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
.+.++|||+|||. ++++++|+++|+.| |.|..++-.+|||||+|.+.++|.+|++.|||..+. |+.|+|+|+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~----G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a 92 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNF---GKKLILEVS 92 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGG----SCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEET---TEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEEec
Confidence 4689999999998 99999999999999 777555445899999999999999999999999998 899999999
Q ss_pred ccc
Q 020917 126 KKN 128 (320)
Q Consensus 126 ~~~ 128 (320)
+.+
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 148
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=121.09 Aligned_cols=76 Identities=9% Similarity=0.202 Sum_probs=71.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
..++|||+|||.++++++|+++|++| .|.+|+|+++.+ +|||||+|.+.++|.+|++ |||..|.| +.|+|.|
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g---r~i~v~~ 83 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG---RYIEVFR 83 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT---EEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC---cEEEEEE
Confidence 46899999999999999999999999 999999987633 7899999999999999999 99999999 9999999
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
++.+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9877
No 149
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-17 Score=123.70 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhc--CceeCcCCCCeE
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQ--EMIFDAETKSVL 120 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~ln--g~~~~~~~gr~l 120 (320)
...++++|||+|||+++|+++|+++|+.| |.|..+ ...||||||+|.+.++|.+|++.|+ +..+. |++|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~l 83 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPF----GKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLR---NQPI 83 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEET---TEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC---CcEE
Confidence 34678999999999999999999999999 655333 3458999999999999999999874 67787 8999
Q ss_pred EEEEccccc
Q 020917 121 HTEMAKKNL 129 (320)
Q Consensus 121 ~v~~a~~~~ 129 (320)
+|.|++.+.
T Consensus 84 ~V~~a~~~~ 92 (101)
T 2cq1_A 84 YIQYSNHKE 92 (101)
T ss_dssp EEEECSCSS
T ss_pred EEEEcCccc
Confidence 999997654
No 150
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=2.7e-17 Score=120.66 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=68.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
.+.++|||+|||.++++++|+++|++||.|.+++++.+.. +|||||+|.+.++|.+|++ ++|..|.| +.|+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g---~~i~v 84 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG---RVIDP 84 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT---EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC---EEEEE
Confidence 3578999999999999999999999999999999987643 8999999999999999995 58899999 99999
Q ss_pred Eee
Q 020917 297 QYS 299 (320)
Q Consensus 297 ~~a 299 (320)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 151
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=135.63 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=71.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCC--CeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQP--GFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G--~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..++|||+||++++++++|+++|++|| .|.+|+|+.+.. +|||||+|.+.++|.+||+.|||..|.| +.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G---r~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG---EKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT---EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC---eEeE
Confidence 468999999999999999999999999 999999987643 7999999999999999999999999999 9999
Q ss_pred EEeecCC
Q 020917 296 IQYSKNP 302 (320)
Q Consensus 296 v~~ak~~ 302 (320)
|.|++..
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9998643
No 152
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=125.19 Aligned_cols=80 Identities=24% Similarity=0.349 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
.+.++|||+|||.++++++|+++|++||.|..+ ......+|||||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG---RSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT---EEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEEcC
Confidence 357899999999999999999999999998877 2222338999999999999999999999999999 999999998
Q ss_pred CCCC
Q 020917 301 NPFG 304 (320)
Q Consensus 301 ~~~~ 304 (320)
.+-.
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8733
No 153
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.9e-17 Score=122.36 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=70.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
..+.++|||+|||.++|+++|+++|+.|+. +.|..++..+|||||+|.+.++|.+|++.|||..|. |+.|+|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD---GSPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEET---TEEEEEECC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeC---CcEEEEEEC
Confidence 356899999999999999999999999943 556555555799999999999999999999999998 899999999
Q ss_pred ccccc
Q 020917 126 KKNLF 130 (320)
Q Consensus 126 ~~~~~ 130 (320)
+.+..
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77643
No 154
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=9.1e-18 Score=132.75 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=67.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
..++.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++.|||..|. |+.|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~---g~~l 118 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD---GRRI 118 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS---SSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---CEEE
Confidence 4467899999999999999999999999944333222221 23699999999999999999999999998 8999
Q ss_pred EEEEcccc
Q 020917 121 HTEMAKKN 128 (320)
Q Consensus 121 ~v~~a~~~ 128 (320)
+|.|++.+
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99999764
No 155
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=4.1e-17 Score=127.47 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=69.4
Q ss_pred CCCe--EEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcce-EEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 222 PCNT--LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTV-CFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 222 ~~~~--LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~-aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
++++ |||+||++.+++++|+++|++||.|++|+|+. + .|| |||+|.+.++|..|+++|||..|.|. ++.|+|+|
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~-~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-NGIQAMVEFESVLCAQKAKAALNGADIYAG-CCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTT-BSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-CCCEEEEEECCHHHHHHHHHHhCCCEecCC-CeEEEEEE
Confidence 4555 57899999999999999999999999999975 3 486 99999999999999999999999872 25899999
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
++.+
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 9877
No 156
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=125.70 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEccccc
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNL 129 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~~~ 129 (320)
++|||+|||.++|+++|+++|+.|+.+....+... .+|||||+|.+.++|++|++.|||..+. |+.|+|.|++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVIC---GSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSS---SCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeEC---CcEEEEEEccCCC
Confidence 48999999999999999999999954433323222 5799999999999999999999999998 8999999997653
No 157
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=123.70 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=66.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCce--eCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMI--FDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~--~~~~~gr~l~ 121 (320)
..++++|||+|||+++|+++|+++|+.| |.|..+ ...||||||+|.+.++|.+|++.|++.. +. |+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~---Gr~l~ 84 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKF----GTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIA---GQQAF 84 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTT----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSS---SSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEE
Confidence 3568999999999999999999999999 655333 3458999999999999999999987654 66 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|+|++.+..
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999976543
No 158
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.3e-17 Score=120.97 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=68.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
...++|||+|||.++|+++|+++|+.|+.+. ..+.....+|||||+|.+.++|.+|++.|||..|. |+.|+|.|++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG---TDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS---SSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEEcC
Confidence 4578999999999999999999999996665 23333456799999999999999999999999998 8999999997
Q ss_pred cc
Q 020917 127 KN 128 (320)
Q Consensus 127 ~~ 128 (320)
.+
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 159
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3.4e-19 Score=138.32 Aligned_cols=87 Identities=17% Similarity=0.313 Sum_probs=76.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeE--------EEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCC
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQ--------MKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~--------v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g 288 (320)
.++++|||+|||.++++++|+++|++||.|.+ |+++.+.. +|||||+|.+.++|.+|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35789999999999999999999999999998 88876532 7999999999999999999999999999
Q ss_pred CCCceeEEEeecCCCCCCCCCC
Q 020917 289 SGSVGMRIQYSKNPFGKRKDGT 310 (320)
Q Consensus 289 ~~~~~l~v~~ak~~~~~~~~~~ 310 (320)
+.|+|+|++.+-..+..+.
T Consensus 85 ---~~l~V~~a~~~~~~~~ggg 103 (116)
T 2lcw_A 85 ---NPIKVSFATRRADFNRGGG 103 (116)
Confidence 8999999988855444443
No 160
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=131.40 Aligned_cols=77 Identities=17% Similarity=0.347 Sum_probs=70.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..+.++|||+|||.++++++|+++|++||.|.+++++++. .+|||||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~ 136 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG---RTIR 136 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT---EEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC---EEEE
Confidence 3457999999999999999999999999999999997653 38999999999999999999999999999 9999
Q ss_pred EEee
Q 020917 296 IQYS 299 (320)
Q Consensus 296 v~~a 299 (320)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 161
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=2.8e-17 Score=128.89 Aligned_cols=77 Identities=16% Similarity=0.340 Sum_probs=71.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
..++|||+||+.++++++|+++|++||.|.+|+++.+. .+|||||+|.+.++|.+|+ .|||..|.| +.|+|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---~~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG---RTIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC---eEEEEE
Confidence 36899999999999999999999999999999998753 2899999999999999999 899999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++..
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 99876
No 162
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=125.05 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=67.5
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCc--eeCcCCCCeE
Q 020917 46 HDEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEM--IFDAETKSVL 120 (320)
Q Consensus 46 ~~~~~~L~V~nLp~-~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~--~~~~~~gr~l 120 (320)
.++.++|||+|||+ ++|++||+++|+.| |.|..+ ...+|||||+|.+.++|.+|++.||+. .|. ||+|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~f----G~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPF----GVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVF---GKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGG----SCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEET---TEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhc----CCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceEC---CcEE
Confidence 45789999999999 99999999999999 766444 345799999999999999999999865 477 8999
Q ss_pred EEEEccccccc
Q 020917 121 HTEMAKKNLFV 131 (320)
Q Consensus 121 ~v~~a~~~~~~ 131 (320)
+|+|++.....
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 1x4d_A 85 RVHLSQKYKRI 95 (102)
T ss_dssp EEEEECCCTTS
T ss_pred EEEECCCCCCC
Confidence 99999865443
No 163
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.9e-17 Score=121.99 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=70.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~ 301 (320)
.+++|||+|||.++++++|+++|++| .|.++++. ..+|||||+|.+.++|.+|++.|||..|.| +.|+|+|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g---~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG---KDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT---EEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC---cEEEEEEcCC
Confidence 36899999999999999999999999 99999985 568999999999999999999999999999 9999999876
Q ss_pred C
Q 020917 302 P 302 (320)
Q Consensus 302 ~ 302 (320)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 164
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.9e-17 Score=122.82 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=68.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
..+.++|||+|||.++|+++|+++|+.|+.+..+.+... +.+|||||+|.+.++|.+|++.|||..|. |+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL---GKEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET---TEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC---CCeEEEE
Confidence 356899999999999999999999999944333223221 34699999999999999999999999998 8999999
Q ss_pred Ecccccc
Q 020917 124 MAKKNLF 130 (320)
Q Consensus 124 ~a~~~~~ 130 (320)
|++....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9987544
No 165
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.72 E-value=2.1e-17 Score=141.07 Aligned_cols=77 Identities=16% Similarity=0.271 Sum_probs=72.5
Q ss_pred CCCeEEEeCCC-CCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 222 PCNTLFIGNLG-ESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 222 ~~~~LfV~NL~-~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
++++|||+||+ ..+++++|+++|++||.|.+|+++++ .+|||||+|.+.++|..||+.|||..|.| +.|+|.|++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g---~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFG---QKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECC---ceEEEEEcc
Confidence 57899999999 89999999999999999999999864 57999999999999999999999999999 999999998
Q ss_pred CC
Q 020917 301 NP 302 (320)
Q Consensus 301 ~~ 302 (320)
..
T Consensus 79 ~~ 80 (205)
T 3tyt_A 79 QP 80 (205)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 166
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=6.8e-18 Score=122.33 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=64.8
Q ss_pred CCeEEEeCCCCCC------CHHHHHHhhccCCCeeEEEEEecC--CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCc-e
Q 020917 223 CNTLFIGNLGESI------NEEELRGLFSAQPGFKQMKVLRQE--RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV-G 293 (320)
Q Consensus 223 ~~~LfV~NL~~~~------tee~L~~~F~~~G~i~~v~i~~~~--~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~-~ 293 (320)
+++|||+|||..+ ++++|+++|++||.|.++++.+.. .+|||||+|.+.++|.+|++.|||..|.| + +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g---~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK---QHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS---SSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC---cee
Confidence 3689999999999 779999999999999999987432 27999999999999999999999999999 7 8
Q ss_pred eEEE
Q 020917 294 MRIQ 297 (320)
Q Consensus 294 l~v~ 297 (320)
|+|+
T Consensus 78 l~V~ 81 (81)
T 2krb_A 78 FRVN 81 (81)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 8763
No 167
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=124.34 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=64.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---e---CCcceEEEEeCCHHHHHHHHHHhcCce----eCcCC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K---GEKPMGFALFSTAQLAVAAKDALQEMI----FDAET 116 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~---~~kg~aFV~F~~~e~A~~A~~~lng~~----~~~~~ 116 (320)
..=.||||+|||+++|+++|+++|+.|+.+...-+++ + .+||||||+|.+.++|.+|++.|||.. ++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~--- 83 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID--- 83 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET---
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC---
Confidence 3457899999999999999999999996543333333 1 246999999999999999999999974 66
Q ss_pred CCeEEEEEccc
Q 020917 117 KSVLHTEMAKK 127 (320)
Q Consensus 117 gr~l~v~~a~~ 127 (320)
||.|+|+||++
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 89999999975
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=119.45 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=67.9
Q ss_pred CCcce-EEEcCCCCCCCHHHHH----HHhhhCCCccc-cEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 47 DEVRT-IFITGLPDDVKERELQ----NLLRWLPGYEA-SQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 47 ~~~~~-L~V~nLp~~~tee~L~----~lF~~~~~~~~-~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
.++.| |||+|||+.+++++|+ ++|+.| | .|+.+.+ |+|||.|.+.++|++|++.|||..++ ||+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y----GG~Vl~Vtg--G~AfV~F~~~esA~~A~~~l~G~~l~---gr~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNC----GGKVLSITG--CSAILRFINQDSAERAQKRMENEDVF---GNRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTT----TCCEEECCT--TCEEEEESSHHHHHHHHHHHTTCCSS---SSCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHc----CCeeEEEec--CEEEEEECCHHHHHHHHHHhcCCccC---CceE
Confidence 45676 9999999999999855 788888 7 8888754 99999999999999999999999999 8999
Q ss_pred EEEEcccccccc
Q 020917 121 HTEMAKKNLFVK 132 (320)
Q Consensus 121 ~v~~a~~~~~~~ 132 (320)
+|.||+.++...
T Consensus 77 ~v~~A~~~sd~~ 88 (96)
T 2diu_A 77 IVSFTPKNRELC 88 (96)
T ss_dssp EEESSCCSCCCC
T ss_pred EEEecCCCccee
Confidence 999999887644
No 169
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=127.60 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=67.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+||++++|+++|+++|+.|+.+....|... .++|||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~---gr~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM---GNIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 46789999999999999999999999944433323221 23599999999999999999999999998 899999
Q ss_pred EEcccccc
Q 020917 123 EMAKKNLF 130 (320)
Q Consensus 123 ~~a~~~~~ 130 (320)
+++.....
T Consensus 81 ~~a~~~~~ 88 (110)
T 3s8s_A 81 QLDIKGQQ 88 (110)
T ss_dssp EECSTTHH
T ss_pred EECCCCcH
Confidence 99975543
No 170
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=2.5e-17 Score=126.15 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=66.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+. +|||||+|.+.++|++|++.|||..+. |+.|+|.|++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a~ 101 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA---NQPLEVVYSK 101 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET---TEECEEESCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEEec
Confidence 567999999999999999999999999444333232 799999999999999999999999997 8999999997
Q ss_pred cccc
Q 020917 127 KNLF 130 (320)
Q Consensus 127 ~~~~ 130 (320)
.+..
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6543
No 171
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=4.2e-17 Score=132.79 Aligned_cols=83 Identities=14% Similarity=0.049 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
....+|||+||++.+|+++|+++|+.|+.+....+..+..+|||||+|.+.++|++|++.|||..|+. .|+.|+|+|++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~V~~Ak 122 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFSK 122 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEEEEECS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEEEEEec
Confidence 34578999999999999999999999943333333223456899999999999999999999999961 14999999998
Q ss_pred cccc
Q 020917 127 KNLF 130 (320)
Q Consensus 127 ~~~~ 130 (320)
.+..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7643
No 172
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=9.8e-17 Score=124.65 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=64.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
...+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++.|||..|. |+.|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 112 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG---TKRL 112 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET---TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC---CEEE
Confidence 3456899999999999999999999999933322222211 23699999999999999999999999998 8999
Q ss_pred EEEEcc
Q 020917 121 HTEMAK 126 (320)
Q Consensus 121 ~v~~a~ 126 (320)
+|+|++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999984
No 173
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=125.14 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=72.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCC-eeEEEEE-ec----CCcceEEEEEcCHHHHHHHHHHhC--CCeeCCCCCce
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVL-RQ----ERHTVCFIEFEDVNSASSVHHNLQ--GAVIPSSGSVG 293 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~-i~~v~i~-~~----~~~g~aFV~F~~~~~A~~Al~~ln--G~~l~g~~~~~ 293 (320)
++++|||+|||.++++++|+++|++||. |.+++++ .+ ..+|||||+|.+.++|..|++.|| +..|.| +.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g---~~ 83 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG---HQ 83 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT---BC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC---Ce
Confidence 4789999999999999999999999998 9999997 33 238999999999999999999996 589999 99
Q ss_pred eEEEeecCCCC
Q 020917 294 MRIQYSKNPFG 304 (320)
Q Consensus 294 l~v~~ak~~~~ 304 (320)
|+|.|++..-.
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999987743
No 174
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=132.38 Aligned_cols=80 Identities=18% Similarity=0.409 Sum_probs=71.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeE--------EEEEe-cCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCC
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ--------MKVLR-QERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~--------v~i~~-~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~ 290 (320)
..++++|||+|||.++|+++|+++|++||.|.+ +++.. ...+|||||+|.+.++|.+|+..|||..|.|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-- 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG-- 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC--
Confidence 346799999999999999999999999998865 44443 3448999999999999999999999999999
Q ss_pred CceeEEEeecCC
Q 020917 291 SVGMRIQYSKNP 302 (320)
Q Consensus 291 ~~~l~v~~ak~~ 302 (320)
+.|+|+|++..
T Consensus 120 -~~l~V~~a~~~ 130 (143)
T 3egn_A 120 -KPMVVQFARSA 130 (143)
T ss_dssp -EECEEEECCCS
T ss_pred -cEEEEEECCCC
Confidence 99999999876
No 175
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.8e-17 Score=123.17 Aligned_cols=82 Identities=16% Similarity=0.280 Sum_probs=67.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee-CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~-~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
..+.++|||+|||.++|+++|+++|+.|+.+..+.+... ..+|||||+|.+.++|++|++.|||..|. |+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD---GYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET---TEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEE
Confidence 356799999999999999999999999943332222222 24699999999999999999999999998 89999999
Q ss_pred cccccc
Q 020917 125 AKKNLF 130 (320)
Q Consensus 125 a~~~~~ 130 (320)
++.+..
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 977643
No 176
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-16 Score=125.34 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=69.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeC----CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~----~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
...+.++|||+|||.++|+++|+++|+.|+.+....+.... .+|||||+|.+.++|++|++.|||..|. |+.|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 114 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL---NKRL 114 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS---SCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeEE
Confidence 44678999999999999999999999999444333333221 2699999999999999999999999998 8999
Q ss_pred EEEEcccccc
Q 020917 121 HTEMAKKNLF 130 (320)
Q Consensus 121 ~v~~a~~~~~ 130 (320)
+|.|++.+..
T Consensus 115 ~v~~a~~~~~ 124 (139)
T 1u6f_A 115 KVALAASGHQ 124 (139)
T ss_dssp EEEESSCCCC
T ss_pred EEEECCCCCC
Confidence 9999987644
No 177
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=4.9e-18 Score=125.53 Aligned_cols=75 Identities=19% Similarity=0.310 Sum_probs=68.0
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
++|||+|||.++++++|+++|++||.|.++++.++.. +|||||+|.+.+ |.+|+..|||..|.| +.|+|+||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g---~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG---RTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS---SSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC---eEEEEEEc
Confidence 5899999999999999999999999999999986543 899999999999 999999999999999 99999999
Q ss_pred cCC
Q 020917 300 KNP 302 (320)
Q Consensus 300 k~~ 302 (320)
..+
T Consensus 78 ~~~ 80 (90)
T 2ki2_A 78 NPK 80 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 876
No 178
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=121.23 Aligned_cols=83 Identities=13% Similarity=0.326 Sum_probs=68.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
...+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 87 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE---GRKIEV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEE
Confidence 3456899999999999999999999999943332222222 24799999999999999999999999998 899999
Q ss_pred EEcccccc
Q 020917 123 EMAKKNLF 130 (320)
Q Consensus 123 ~~a~~~~~ 130 (320)
.|++.+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99977644
No 179
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=7.6e-18 Score=127.29 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=69.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEe----cCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLR----QERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~----~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++++++|+++|++||.|.. .++. ...+|||||+|.+.++|.+|++ |||..|.| +.|+|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g---~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG---NEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT---BCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC---cEEEEE
Confidence 4689999999999999999999999998766 3322 2348999999999999999998 99999999 999999
Q ss_pred eecCCCCC
Q 020917 298 YSKNPFGK 305 (320)
Q Consensus 298 ~ak~~~~~ 305 (320)
|++.+-.+
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99887433
No 180
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=5.4e-17 Score=117.65 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=65.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
...-|||+||++.+||++|+++|..| |.|+.+ ..+||||||+|.+.++|++|++.|||..++ ||+|+|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~----G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~---gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH----GPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLA---NTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEET---TEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh----CCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEEC---CcEEEEEEC
Confidence 35679999999999999999999999 777554 346899999999999999999999999998 899999999
Q ss_pred c
Q 020917 126 K 126 (320)
Q Consensus 126 ~ 126 (320)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 181
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=1.4e-17 Score=126.12 Aligned_cols=92 Identities=15% Similarity=0.253 Sum_probs=71.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
..++|||+|||.++++++|+++|++||.|.+++++.+.+ +|||||+|.+.++|.+|++ ||..|.| +.|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g---~~l~v~~ 82 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG---KKLKLGP 82 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT---EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC---EEEEEEE
Confidence 468999999999999999999999999999999987543 7999999999999999998 9999999 9999999
Q ss_pred ecCCCCCCCCCCCCCCCCCC
Q 020917 299 SKNPFGKRKDGTNGVPPALN 318 (320)
Q Consensus 299 ak~~~~~~~~~~~~~~~~~~ 318 (320)
+..+-..........|+.+|
T Consensus 83 a~~~~~~~~~~~~~~p~~~n 102 (102)
T 2xs2_A 83 AIRKQNLSTYHVQPRPLIFN 102 (102)
T ss_dssp EEECC-----C---------
T ss_pred CCcCcchhhccCCCcCcCCC
Confidence 98764444444455555443
No 182
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=134.96 Aligned_cols=80 Identities=8% Similarity=0.114 Sum_probs=64.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCC--CccccEEEee---C-CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLP--GYEASQVNYK---G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~--~~~~~iv~~~---~-~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
.+.++|||+|||+++|+++|+++|+.|+ .+....+... + .+|||||+|.+.++|++||+.|||..|. |+.|
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~---Gr~l 129 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN---GEKV 129 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET---TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CeEe
Confidence 4678999999999999999999999995 3322222221 1 3599999999999999999999999998 8999
Q ss_pred EEEEccccc
Q 020917 121 HTEMAKKNL 129 (320)
Q Consensus 121 ~v~~a~~~~ 129 (320)
+|.++..+.
T Consensus 130 ~V~~a~~~~ 138 (156)
T 3n9u_C 130 DVRPATRQN 138 (156)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCCCc
Confidence 999997653
No 183
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.4e-17 Score=118.74 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=66.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 225 ~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
+|||+|||.++++++|+++|++||.|.++++..+.. +|||||+|.+.++|.+|++ |||..|.| +.|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g---~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN---KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS---CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC---EEEEEEeC
Confidence 499999999999999999999999999999986542 7999999999999999997 99999999 89999986
No 184
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.6e-17 Score=124.81 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=66.8
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcC--ceeCcCCCCeEEE
Q 020917 46 HDEVRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQE--MIFDAETKSVLHT 122 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~-~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng--~~~~~~~gr~l~v 122 (320)
..+.++|||+|||++ +|+++|+++|+.|+.+... ++...||||||+|.+.++|.+|++.|++ ..|. ||.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v--~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~---Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNY--ILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQ---GRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEE--EEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSS---SSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEE--EEecCCCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEEE
Confidence 567899999999998 9999999999999443332 2235689999999999999999998865 4576 899999
Q ss_pred EEccccccc
Q 020917 123 EMAKKNLFV 131 (320)
Q Consensus 123 ~~a~~~~~~ 131 (320)
+|++.+...
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 999766543
No 185
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=122.57 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=69.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 44 ~~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
....+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 86 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA---TKPLY 86 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS---SSBCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC---CcEEE
Confidence 34467899999999999999999999999944333223222 23599999999999999999999999997 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|.|++.+..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999987644
No 186
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.4e-17 Score=119.13 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=68.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
..+.++|||+|||.++|+++|+++|+.| |.|..++-.++||||+|.+.++|.+|++.|||..|. |+.|+|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY----GPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQ---GKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT----SCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEET---TEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeC---CcEEEEEEc
Confidence 3568999999999999999999999999 666444434689999999999999999999999998 899999999
Q ss_pred ccccc
Q 020917 126 KKNLF 130 (320)
Q Consensus 126 ~~~~~ 130 (320)
+.+..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 76644
No 187
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=1.3e-16 Score=123.39 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=68.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... + .+|||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 99 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG---MKRLKV 99 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC---CEEEEE
Confidence 46789999999999999999999999955544333332 1 2599999999999999999999999998 899999
Q ss_pred EEcccccc
Q 020917 123 EMAKKNLF 130 (320)
Q Consensus 123 ~~a~~~~~ 130 (320)
.|++.+..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99976644
No 188
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=122.09 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=63.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCC-Ccccc-EEEee---CCcceEEEEeCCHHHHHHHHHHhc-CceeCcCCCCeEEE
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLP-GYEAS-QVNYK---GEKPMGFALFSTAQLAVAAKDALQ-EMIFDAETKSVLHT 122 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~-~~~~~-iv~~~---~~kg~aFV~F~~~e~A~~A~~~ln-g~~~~~~~gr~l~v 122 (320)
+++|||+|||.++||++|+++|+.|+ .+... +++.+ .+||||||+|.+.++|.+|++.++ +..+. |+.|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~---gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL---GQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET---TEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC---CEEEEE
Confidence 46899999999999999999999995 33322 22221 246999999999999999999874 56677 899999
Q ss_pred EEccccc
Q 020917 123 EMAKKNL 129 (320)
Q Consensus 123 ~~a~~~~ 129 (320)
+||+++.
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9997654
No 189
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.6e-17 Score=119.12 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=68.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
.+.++|||+|||.++|+++|+++|+.| |.|..++-.+|||||+|.+.++|++|++.|||..+. |+.|+|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQY----GKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLH---GVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTS----SCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCS---SCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccC---CcEEEEEECC
Confidence 568999999999999999999999999 666444333799999999999999999999999998 8999999997
Q ss_pred cccc
Q 020917 127 KNLF 130 (320)
Q Consensus 127 ~~~~ 130 (320)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6644
No 190
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=1.5e-16 Score=120.63 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=69.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
.+.++|||+|||.++|+++|+++|+.| |.|..++-.++||||+|.+.++|.+|++.|||..|. |+.|+|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQF----GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLE---GENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHH----SCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEET---TEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccC---CCEEEEEEcC
Confidence 457999999999999999999999999 777666545789999999999999999999999998 8999999997
Q ss_pred cccc
Q 020917 127 KNLF 130 (320)
Q Consensus 127 ~~~~ 130 (320)
.+..
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7654
No 191
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=125.55 Aligned_cols=78 Identities=12% Similarity=0.104 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCe-eEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGF-KQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i-~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
.+.++|||+|||+++++++|+++|++||.| .+|+|+.+.+ +|||||+|.+.++|.+||+. ||..|.| +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g---r~i~v 88 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG---REAFV 88 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT---EEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC---eEEEE
Confidence 357899999999999999999999999999 8899876543 89999999999999999986 9999999 99999
Q ss_pred EeecCC
Q 020917 297 QYSKNP 302 (320)
Q Consensus 297 ~~ak~~ 302 (320)
.|++.+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 192
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=9.7e-17 Score=120.72 Aligned_cols=79 Identities=25% Similarity=0.325 Sum_probs=68.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
.+.++|||+|||.++|+++|+++|+.|+.+.. +.+...+|||||+|.+.++|++|++.|||..|. |+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE--VFIHKDKGFGFIRLETRTLAEIAKVELDNMPLR---GKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSE--EEEETTTTEEEEECSSSHHHHHHHHHHTTCCBT---TBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEE--EEEecCCCEEEEEECCHHHHHHHHHHhCCCEeC---CceEEEEEcC
Confidence 56789999999999999999999999943322 333456899999999999999999999999998 8999999997
Q ss_pred cccc
Q 020917 127 KNLF 130 (320)
Q Consensus 127 ~~~~ 130 (320)
.+..
T Consensus 88 ~~~~ 91 (99)
T 2cpj_A 88 HSAS 91 (99)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7543
No 193
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-17 Score=118.03 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=67.3
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
++|||+|||.++++++|+++|++||.|.++++.++.. +|||||+|.+.++|.+|++.|| ..|.| +.|+|+|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g---~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS---KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS---CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC---EEEEEEec
Confidence 4799999999999999999999999999999987543 7999999999999999999999 99999 89999987
No 194
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-16 Score=120.29 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=69.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeE-EEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQ-MKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~-v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
..++|||+|||+++++++|+++|++||.|.+ |+|+.+.+ +|||||+|.+.++|.+||+. ||..|.| +.|+|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g---r~i~v~ 89 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH---RYIEIF 89 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS---SCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC---cEEEEE
Confidence 4689999999999999999999999999987 88865432 89999999999999999987 9999999 899999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98765
No 195
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=6.1e-17 Score=125.98 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=70.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCC---eeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPG---FKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~---i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..++|||+|||+++|+++|+++|++||. |.+|+|+.+.. +|||||+|.+.++|.+||+ |||..|.| +.|+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g---r~i~ 91 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH---RYIE 91 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT---EEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC---eEEE
Confidence 4689999999999999999999999998 89999986544 7899999999999999998 99999999 9999
Q ss_pred EEeecCC
Q 020917 296 IQYSKNP 302 (320)
Q Consensus 296 v~~ak~~ 302 (320)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998543
No 196
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.6e-17 Score=119.64 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=66.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD---GRRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 466899999999999999999999999944433333321 12599999999999999999999999998 89999
Q ss_pred EEEccc
Q 020917 122 TEMAKK 127 (320)
Q Consensus 122 v~~a~~ 127 (320)
|.|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 197
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=4.8e-17 Score=124.89 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=65.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCC-CccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLP-GYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~-~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
...+|||+|||+++|+++|+++|+.|+ .+....+..+..+|||||+|.+.++|++|++.|||..+. |+.|+|++++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~---Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR---GSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET---TEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEECC
Confidence 468999999999999999999999994 232222222345799999999999999999999999998 8999999986
Q ss_pred cc
Q 020917 127 KN 128 (320)
Q Consensus 127 ~~ 128 (320)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 198
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=1.2e-16 Score=116.50 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=64.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----e--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
..+.++|||+|||.++++++|+++|+.| |.|..+ . + .+|||||+|.+.++|.+|++.|||..+. |
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 76 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---G 76 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---T
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhcc----CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 3568999999999999999999999999 555333 1 1 3599999999999999999999999998 8
Q ss_pred CeEEEEEcc
Q 020917 118 SVLHTEMAK 126 (320)
Q Consensus 118 r~l~v~~a~ 126 (320)
+.|+|.|++
T Consensus 77 ~~l~v~~ak 85 (85)
T 3mdf_A 77 RTIRVNLAK 85 (85)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999984
No 199
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=120.33 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=67.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----e----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
..+.++|||+|||.++|+++|+++|+.| |.|..+ . ..+|||||+|.+.++|++|++.|||..|. |
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 84 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQA----GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY---G 84 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS---S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC---C
Confidence 3568999999999999999999999999 555333 1 13599999999999999999999999998 8
Q ss_pred CeEEEEEcccccc
Q 020917 118 SVLHTEMAKKNLF 130 (320)
Q Consensus 118 r~l~v~~a~~~~~ 130 (320)
+.|+|.|++.+..
T Consensus 85 ~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 85 KPIRVNKASAHNK 97 (105)
T ss_dssp CBCEEEETTTTSC
T ss_pred eEEEEEECCCCCc
Confidence 9999999977643
No 200
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=117.72 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=64.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v 90 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF---GRVIKA 90 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET---TEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC---CcEEEE
Confidence 56789999999999999999999999933322222221 23599999999999999999999999998 899999
Q ss_pred EEcc
Q 020917 123 EMAK 126 (320)
Q Consensus 123 ~~a~ 126 (320)
+||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 201
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=116.90 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=65.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHh-cCceeCcCCCCeEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDAL-QEMIFDAETKSVLHTE 123 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~l-ng~~~~~~~gr~l~v~ 123 (320)
.+.++|||+|||.++|+++|+++|+.| |.|..+ ..++|||||+|.+.++|.+|++.| +|..+. |+.|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~----G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~---g~~l~v~ 82 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQF----GEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVN---GRRLNVK 82 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTT----SCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEET---TEECCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhC----CCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeEC---CCEEEEE
Confidence 457899999999999999999999999 666443 345799999999999999999998 999998 8999999
Q ss_pred Ecc
Q 020917 124 MAK 126 (320)
Q Consensus 124 ~a~ 126 (320)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 202
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=118.38 Aligned_cols=76 Identities=12% Similarity=0.215 Sum_probs=66.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~ 301 (320)
..++|||+|||.++++++|+++|++||.|.+|.+.+...+ ||||+|.+.++|.+|+. |||..|.| +.|+|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g---~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGG---HRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETT---EECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECC---EEEEEEECCc
Confidence 3679999999999999999999999999999833222223 99999999999999999 99999999 9999999876
Q ss_pred C
Q 020917 302 P 302 (320)
Q Consensus 302 ~ 302 (320)
+
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 5
No 203
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.2e-17 Score=123.86 Aligned_cols=76 Identities=24% Similarity=0.218 Sum_probs=65.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
...++|||+|||.++|+++|+++|+.|+.+.. +++...+|||||+|.+.++|.+|++.|||..+. |+.|+|.|++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILD--FKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQ---GRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSE--EEEETTTTEEEEECSSHHHHHHHHHHHTTCEET---TEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEE--EEEecCCCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEEecc
Confidence 45789999999999999999999999943332 233356799999999999999999999999998 8999999997
Q ss_pred c
Q 020917 127 K 127 (320)
Q Consensus 127 ~ 127 (320)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 204
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=7.1e-17 Score=118.32 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=64.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... + .+|||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---GRQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 46789999999999999999999999944333323222 1 2599999999999999999999999998 899999
Q ss_pred EEcccc
Q 020917 123 EMAKKN 128 (320)
Q Consensus 123 ~~a~~~ 128 (320)
.|++.+
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 999754
No 205
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=126.18 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=66.8
Q ss_pred CCcceEEEcCCCCCCCHHHHH----HHhhhCCCccccEEEe---e--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 47 DEVRTIFITGLPDDVKERELQ----NLLRWLPGYEASQVNY---K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~----~lF~~~~~~~~~iv~~---~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
.++++|||+|||+.+++++|+ ++|+.| |.|+.+ + .+||||||+|.+.++|.+|++.|||..|. |
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~----G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~---g 99 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQ----GDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ---G 99 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT---T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccC----CCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC---C
Confidence 457899999999999999977 689999 555333 2 34699999999999999999999999998 8
Q ss_pred CeEEEEEccccccc
Q 020917 118 SVLHTEMAKKNLFV 131 (320)
Q Consensus 118 r~l~v~~a~~~~~~ 131 (320)
+.|+|.|++.+...
T Consensus 100 r~l~V~~a~~~~~~ 113 (127)
T 2a3j_A 100 NPLVITFSETPQSQ 113 (127)
T ss_dssp SCCEEEECCCCCHH
T ss_pred CEEEEEEccCcchh
Confidence 99999999877653
No 206
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=6.9e-17 Score=125.10 Aligned_cols=74 Identities=15% Similarity=0.158 Sum_probs=66.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCce-----eEEE
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG-----MRIQ 297 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~-----l~v~ 297 (320)
.++|||+|||.++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|.+||+.|||..|.| +. |+|.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g---r~~~~~~i~v~ 89 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRS---HEGETAYIRVK 89 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCC---TTSCCCBCEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECC---cEeeeEEEEec
Confidence 688999999999999999999999999999999864 999999999999999999999999999 77 7777
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
.++..
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 77665
No 207
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=119.38 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=67.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||.++|+++|+++|+.| +.|..+. ..+|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 84 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA----TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE---GRAIR 84 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC----SEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET---TEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC---CeEEE
Confidence 3568999999999999999999999999 5553222 23699999999999999999999999998 89999
Q ss_pred EEEccccc
Q 020917 122 TEMAKKNL 129 (320)
Q Consensus 122 v~~a~~~~ 129 (320)
|.|++.+.
T Consensus 85 v~~a~~~~ 92 (101)
T 2fc9_A 85 LELQGPRG 92 (101)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCC
Confidence 99997664
No 208
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=120.28 Aligned_cols=82 Identities=20% Similarity=0.219 Sum_probs=68.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 85 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD---GRQIR 85 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT---SCCCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 356899999999999999999999999954443333321 13699999999999999999999999998 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|.|++.+..
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999977654
No 209
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=118.77 Aligned_cols=81 Identities=15% Similarity=0.268 Sum_probs=67.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-eC--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+.. ++ .+|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 90 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK---ENIIKV 90 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS---SCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEE
Confidence 35678999999999999999999999994433322322 11 2599999999999999999999999998 899999
Q ss_pred EEccccc
Q 020917 123 EMAKKNL 129 (320)
Q Consensus 123 ~~a~~~~ 129 (320)
.|++.+.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9997653
No 210
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=117.96 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCC-ccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcC-ceeCcCCCCeEEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPG-YEASQVNYKGEKPMGFALFSTAQLAVAAKDALQE-MIFDAETKSVLHTEM 124 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~-~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng-~~~~~~~gr~l~v~~ 124 (320)
.+.++|||+|||.++|+++|+++|+.|+. +...++. .+|||||+|.+.++|++|++.||| ..+. |+.|+|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELH---GKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEET---TEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeEC---CEEEEEEE
Confidence 45789999999999999999999999965 4444442 369999999999999999999999 8998 89999999
Q ss_pred ccccc
Q 020917 125 AKKNL 129 (320)
Q Consensus 125 a~~~~ 129 (320)
++.+.
T Consensus 80 a~~~~ 84 (93)
T 2cqh_A 80 SVSKK 84 (93)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 97654
No 211
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.7e-17 Score=125.92 Aligned_cols=77 Identities=6% Similarity=0.051 Sum_probs=67.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEe-cC---CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLR-QE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~-~~---~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
..++|||+|||+++|+++|+++|++||.|.++.++. +. .+|||||+|.+.++|.+||+ |||..|.| +.|+|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g---r~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN---RFIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT---SCBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC---cEEEEE
Confidence 468999999999999999999999999997743332 22 27999999999999999999 99999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
+++..
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 212
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=2.5e-16 Score=121.72 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=68.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+... + .+|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 88 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---GRQIR 88 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET---TEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 457899999999999999999999999944433323222 1 2599999999999999999999999998 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|.|++.+..
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999976644
No 213
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-16 Score=119.43 Aligned_cols=78 Identities=23% Similarity=0.279 Sum_probs=67.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----e---C--CcceEEEEeCCHHHHHHHHHHh-cCceeCcC
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K---G--EKPMGFALFSTAQLAVAAKDAL-QEMIFDAE 115 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~---~--~kg~aFV~F~~~e~A~~A~~~l-ng~~~~~~ 115 (320)
..+.++|||+|||.++|+++|+++|+.| |.|..+ . + .+|||||+|.+.++|.+|++.| ||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~-- 85 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF----GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY-- 85 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS--
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc----CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC--
Confidence 4568999999999999999999999999 555332 1 1 2699999999999999999999 999998
Q ss_pred CCCeEEEEEcccccc
Q 020917 116 TKSVLHTEMAKKNLF 130 (320)
Q Consensus 116 ~gr~l~v~~a~~~~~ 130 (320)
|+.|+|.|++.+..
T Consensus 86 -g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 -GRRLVLEWADSEVT 99 (107)
T ss_dssp -SCBCEEEECCCCCC
T ss_pred -CCEEEEEeCCCCCC
Confidence 89999999987644
No 214
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=118.69 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=65.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccc--------cEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA--------SQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~--------~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~ 114 (320)
.+.++|||+|||.++|+++|+++|+.|+.+.. ..+... ..+|||||+|.+.++|.+|++.|||..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~- 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 45789999999999999999999999966654 222221 12599999999999999999999999998
Q ss_pred CCCCeEEEEEcc
Q 020917 115 ETKSVLHTEMAK 126 (320)
Q Consensus 115 ~~gr~l~v~~a~ 126 (320)
|+.|+|+||+
T Consensus 90 --g~~l~V~~A~ 99 (99)
T 2la6_A 90 --GNPIKVSFAT 99 (99)
T ss_dssp --SSBCEEEECC
T ss_pred --CcEEEEEecC
Confidence 8999999984
No 215
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=119.64 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=67.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-eC------CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCe
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KG------EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~~------~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~ 119 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+.. +. .+|||||+|.+.++|++|++.|||..|. |+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD---GHK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC---CeE
Confidence 5689999999999999999999999994443333332 21 2599999999999999999999999998 899
Q ss_pred EEEEEcccccc
Q 020917 120 LHTEMAKKNLF 130 (320)
Q Consensus 120 l~v~~a~~~~~ 130 (320)
|+|.|++.+..
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 99999976543
No 216
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-16 Score=118.53 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=67.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----e----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
.+.++|||+|||.++|+++|+++|+.| |.|..+ . ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 78 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAY----GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ---GR 78 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS---SC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC---Cc
Confidence 568999999999999999999999999 555333 1 13599999999999999999999999998 89
Q ss_pred eEEEEEcccccc
Q 020917 119 VLHTEMAKKNLF 130 (320)
Q Consensus 119 ~l~v~~a~~~~~ 130 (320)
.|+|.|++.+..
T Consensus 79 ~l~V~~a~~~~~ 90 (99)
T 1whw_A 79 MLHVLPSTIKKE 90 (99)
T ss_dssp EEEEEECCCCST
T ss_pred EEEEEEcCCCcc
Confidence 999999977643
No 217
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=118.07 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCcccc-EEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEAS-QVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~-iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
.+.++|||+|||.++|+++|+++|+.|+.+... .+... ..+|||||+|.+.++|++|++.|||..+. |+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET---TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 468999999999999999999999999665544 23221 23699999999999999999999999998 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|.|++.+..
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999976643
No 218
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=119.66 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=68.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V 86 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---GRTIRV 86 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET---TEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEE
Confidence 56899999999999999999999999954444333221 24699999999999999999999999998 899999
Q ss_pred EEcccccc
Q 020917 123 EMAKKNLF 130 (320)
Q Consensus 123 ~~a~~~~~ 130 (320)
.|++.+..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2cqb_A 87 NLAKPMRI 94 (102)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99977643
No 219
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=116.94 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=68.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
..+.++|||+|||.++|+++|+++|+.| |.|..++-.++||||+|.+.++|++|++.|||..+. |+.|+|.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERR----GRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVK---GKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHH----SCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEET---TEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcC----CCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEEC
Confidence 3568899999999999999999999999 777665544689999999999999999999999998 899999999
Q ss_pred cccc
Q 020917 126 KKNL 129 (320)
Q Consensus 126 ~~~~ 129 (320)
+...
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 220
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1.4e-16 Score=124.41 Aligned_cols=75 Identities=21% Similarity=0.378 Sum_probs=70.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
.++++|||+|| ++++++|+++|++||.|.+|++. ..+|||||+|.+.++|.+|++.|||..|.| +.|+|+|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g---~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES---VQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSS---CBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECC---eEEEEEEeC
Confidence 35789999996 69999999999999999999996 568999999999999999999999999999 999999998
Q ss_pred CC
Q 020917 301 NP 302 (320)
Q Consensus 301 ~~ 302 (320)
.+
T Consensus 110 ~~ 111 (121)
T 2bz2_A 110 KQ 111 (121)
T ss_dssp SS
T ss_pred CC
Confidence 77
No 221
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.68 E-value=1.7e-16 Score=115.24 Aligned_cols=77 Identities=23% Similarity=0.365 Sum_probs=64.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
+.+|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++.|||..+. |+.|+|.|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---GRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC---CcEEEEEe
Confidence 368999999999999999999999944333323222 12599999999999999999999999998 89999999
Q ss_pred cccc
Q 020917 125 AKKN 128 (320)
Q Consensus 125 a~~~ 128 (320)
++.+
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 9765
No 222
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=118.20 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA---GRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS---SSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC---CcEEEE
Confidence 46789999999999999999999999944333222221 13599999999999999999999999998 899999
Q ss_pred EEcccccc
Q 020917 123 EMAKKNLF 130 (320)
Q Consensus 123 ~~a~~~~~ 130 (320)
.|++.+..
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99976543
No 223
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=118.81 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=66.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++ |+|..|. |+.|+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~~l~ 82 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM---GKKVE 82 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS---SCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC---CeEEE
Confidence 356899999999999999999999999943333222221 136999999999999999999 9999998 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|.|++.+..
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 999986644
No 224
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=1.3e-16 Score=117.80 Aligned_cols=73 Identities=19% Similarity=0.342 Sum_probs=63.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeC--CCCCceeEEEee
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIP--SSGSVGMRIQYS 299 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~--g~~~~~l~v~~a 299 (320)
+.++|||+|||+++|+++|+++|++||.|.+++|+++ .+|||||+|.+.++|. .|+|..+. | +.|+|.++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~----~~~~~~~~~~g---~~v~v~~a 81 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQ----SLCGEDLIIKG---ISVHISNA 81 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHH----HHTTCEEEETT---EEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHH----HHcCCCcccCC---EEEEEEEc
Confidence 4789999999999999999999999999999999864 6899999999999987 36777665 5 89999999
Q ss_pred cCC
Q 020917 300 KNP 302 (320)
Q Consensus 300 k~~ 302 (320)
+.+
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 876
No 225
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.2e-16 Score=119.55 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=69.8
Q ss_pred CCCCCeEEEeCCCCCCC-----------HHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCC
Q 020917 220 NPPCNTLFIGNLGESIN-----------EEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~t-----------ee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g 288 (320)
..++++|+|+||....+ +++|+++|++||.|.+|.|.....+|||||+|.+.++|.+|++.|||+.|.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34689999999955432 5899999999999999977543458999999999999999999999999999
Q ss_pred CCCceeEEEeecCC
Q 020917 289 SGSVGMRIQYSKNP 302 (320)
Q Consensus 289 ~~~~~l~v~~ak~~ 302 (320)
+.|+|.|++.+
T Consensus 92 ---r~l~v~~a~~~ 102 (112)
T 2dit_A 92 ---RQITAQAWDGT 102 (112)
T ss_dssp ---EECEEEECCSC
T ss_pred ---cEEEEEEeCCC
Confidence 99999998775
No 226
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=118.98 Aligned_cols=78 Identities=24% Similarity=0.315 Sum_probs=66.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--e-C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--K-G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~-~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
..+.++|||+|||.++|+++|+++|+.| +.+..+ + + .+|||||+|.+.++|++|++.|||..|. |+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 84 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID---GNKV 84 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC----SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC----eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC---CeEE
Confidence 3568999999999999999999999987 444332 2 1 2599999999999999999999999998 8999
Q ss_pred EEEEcccccc
Q 020917 121 HTEMAKKNLF 130 (320)
Q Consensus 121 ~v~~a~~~~~ 130 (320)
+|.|++.+..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9999987643
No 227
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.68 E-value=3.4e-16 Score=118.97 Aligned_cols=84 Identities=21% Similarity=0.167 Sum_probs=67.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee-C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~-~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... + .+|||||+|.+.++|.+|++.|||..+....++.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 46899999999999999999999999944333223221 1 25999999999999999999999999972111999999
Q ss_pred Ecccccc
Q 020917 124 MAKKNLF 130 (320)
Q Consensus 124 ~a~~~~~ 130 (320)
|++.+..
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987643
No 228
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=1.5e-16 Score=119.04 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=66.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----e----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCe
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~ 119 (320)
++++|||+|||.++++++|+++|+.| |.|..+ . ..+|||||+|.+.++|.+|++.|||..+. |+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~ 73 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNV----GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG---SRF 73 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC---CeE
Confidence 47899999999999999999999999 555333 1 12699999999999999999999999998 899
Q ss_pred EEEEEcccccc
Q 020917 120 LHTEMAKKNLF 130 (320)
Q Consensus 120 l~v~~a~~~~~ 130 (320)
|+|.|++.+..
T Consensus 74 l~V~~a~~~~~ 84 (96)
T 2x1f_A 74 LKCGYSSNSDI 84 (96)
T ss_dssp CEEEECSCSSG
T ss_pred EEEEEcCCCCC
Confidence 99999987654
No 229
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.6e-16 Score=116.56 Aligned_cols=78 Identities=13% Similarity=0.199 Sum_probs=67.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
..+.++|||+|||.++|+++|+++|+.| |.|..+ ...+|||||+|.+.++|++|++.|||..+.. .|+.|+|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF----GSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGG-PDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT----SCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSS-SSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCC-CCcEEEEE
Confidence 3567899999999999999999999999 666443 3447999999999999999999999999851 25999999
Q ss_pred Ecccc
Q 020917 124 MAKKN 128 (320)
Q Consensus 124 ~a~~~ 128 (320)
|++.+
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99765
No 230
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.9e-17 Score=118.82 Aligned_cols=75 Identities=21% Similarity=0.368 Sum_probs=65.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCee--CCCCCceeEEEee
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI--PSSGSVGMRIQYS 299 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l--~g~~~~~l~v~~a 299 (320)
++++|||+|||.++++++|+++|++||.|.+++++++ .+|||||+|.+.++|.+ ++|..+ .| +.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~~~g---~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLIIKG---ISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEEETT---EEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCceeCC---EEEEEEec
Confidence 4789999999999999999999999999999999864 68999999999999974 455555 66 89999999
Q ss_pred cCCCC
Q 020917 300 KNPFG 304 (320)
Q Consensus 300 k~~~~ 304 (320)
+.+-.
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88733
No 231
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=9.8e-17 Score=139.22 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCC--CeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQP--GFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G--~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..++|||+||++++|+++|+++|++|| .|++|+|+.+.. +|||||+|.+.++|.+||+.|||..|.| +.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G---r~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG---QNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT---BCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC---EEeE
Confidence 467999999999999999999999999 999999987642 8999999999999999999999999999 9999
Q ss_pred EEeecC
Q 020917 296 IQYSKN 301 (320)
Q Consensus 296 v~~ak~ 301 (320)
|.|++.
T Consensus 144 V~~a~~ 149 (229)
T 3q2s_C 144 VTPVNK 149 (229)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 999854
No 232
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=2e-16 Score=135.72 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=72.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
|.++|||+|||.++|+++|+++|++||.|.+|+|+++.. +|||||+|.+.++|.+|++.|||..+.| +.|++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g---~~i~~~ 90 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG---KPVRIM 90 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC---cccccc
Confidence 578999999999999999999999999999999987543 7999999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
++...
T Consensus 91 ~~~~~ 95 (213)
T 4f02_A 91 WSQRD 95 (213)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 98765
No 233
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=117.84 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=66.0
Q ss_pred CCcceEEEcCCCCCCCHHHHH----HHhhhCCCccccEEEe-----eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 47 DEVRTIFITGLPDDVKERELQ----NLLRWLPGYEASQVNY-----KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~----~lF~~~~~~~~~iv~~-----~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
.+.++|||+|||+++++++|+ ++|+.| |.|..+ +..+|||||+|.+.++|.+|++.|||..+. |
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~----G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~---g 79 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARH----GKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG---S 79 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET---T
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhcccc----CcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 457899999999999999999 999999 555333 122899999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 020917 118 SVLHTEMAKKNL 129 (320)
Q Consensus 118 r~l~v~~a~~~~ 129 (320)
+.|+|.|++...
T Consensus 80 r~l~V~~a~~~~ 91 (96)
T 2dgx_A 80 KKILVSLATGAS 91 (96)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEEcCCCC
Confidence 999999997653
No 234
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.9e-16 Score=119.38 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=66.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCc-ceEEEEeCCHHHHHHHHHHhcCceeCcCCC-----CeE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEK-PMGFALFSTAQLAVAAKDALQEMIFDAETK-----SVL 120 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~k-g~aFV~F~~~e~A~~A~~~lng~~~~~~~g-----r~l 120 (320)
...++|||+|||+++|+++|+++|+.| +.|..++-.+ |||||+|.+.++|++||+.|||..|. | +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR---SHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEE---CTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCcc---CCcCcceEE
Confidence 457899999999999999999999999 6664432111 99999999999999999999999998 7 999
Q ss_pred EEEEcccccc
Q 020917 121 HTEMAKKNLF 130 (320)
Q Consensus 121 ~v~~a~~~~~ 130 (320)
+|++++.+..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999987543
No 235
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=120.26 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=66.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||..+|+++|+++|+.|+.+....+... + .+|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~---g~~l~V 100 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA---GRPMKV 100 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS---SSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEE
Confidence 35789999999999999999999999944433323222 1 2599999999999999999999999998 899999
Q ss_pred EEccccc
Q 020917 123 EMAKKNL 129 (320)
Q Consensus 123 ~~a~~~~ 129 (320)
.|++.+.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9997653
No 236
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=116.18 Aligned_cols=78 Identities=10% Similarity=0.107 Sum_probs=64.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----C-CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~-~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..++|||+|||.++|+++|+++|+.|+.+....+... . .+|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID---GQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC---CeEEEE
Confidence 4689999999999999999999999933322222221 1 4699999999999999999999999998 899999
Q ss_pred EEcccc
Q 020917 123 EMAKKN 128 (320)
Q Consensus 123 ~~a~~~ 128 (320)
.++...
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999654
No 237
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=1.1e-16 Score=127.45 Aligned_cols=76 Identities=9% Similarity=0.045 Sum_probs=70.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCC---eeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPG---FKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~---i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..++|||+|||+++|++||+++|++||. |.+|+|+++.. +|||||+|.+.++|.+||+ |||..|.| +.|+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g---r~i~ 118 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH---RYIE 118 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS---SEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC---EEEE
Confidence 4689999999999999999999999999 88999987543 7899999999999999999 99999999 9999
Q ss_pred EEeecC
Q 020917 296 IQYSKN 301 (320)
Q Consensus 296 v~~ak~ 301 (320)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999754
No 238
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=119.72 Aligned_cols=82 Identities=26% Similarity=0.307 Sum_probs=68.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD---HLILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC---CcEEE
Confidence 466899999999999999999999999944433333221 12599999999999999999999999998 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|.|++.+..
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999976643
No 239
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=5.5e-16 Score=116.26 Aligned_cols=79 Identities=14% Similarity=0.113 Sum_probs=67.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccE-EEeeC---CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYKG---EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i-v~~~~---~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
...++|||+|||.++|+++|+++|+.|+.+.... +..+. .+|||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~V 89 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---SRKVKL 89 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC---CeEEEE
Confidence 4578999999999999999999999996665433 33321 3599999999999999999999999998 899999
Q ss_pred EEcccc
Q 020917 123 EMAKKN 128 (320)
Q Consensus 123 ~~a~~~ 128 (320)
+++...
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998643
No 240
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.6e-16 Score=120.02 Aligned_cols=82 Identities=24% Similarity=0.246 Sum_probs=67.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhc------CceeCcC
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQ------EMIFDAE 115 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~ln------g~~~~~~ 115 (320)
..+.++|||+|||.++|+++|+++|+.|+.+..+.+... ..+|||||+|.+.++|.+|++.|| |..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~-- 89 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD-- 89 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc--
Confidence 356899999999999999999999999933322222221 236999999999999999999999 99998
Q ss_pred CCCeEEEEEcccccc
Q 020917 116 TKSVLHTEMAKKNLF 130 (320)
Q Consensus 116 ~gr~l~v~~a~~~~~ 130 (320)
|+.|+|.|++.+..
T Consensus 90 -g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 -GRQLKVDLAVTRDE 103 (111)
T ss_dssp -SCEEEEECCCCCCC
T ss_pred -CEEEEEEECCCCcc
Confidence 89999999987644
No 241
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=7.8e-17 Score=120.60 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=66.8
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 46 HDEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 46 ~~~~~~L~V~nLp~-~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
..+.++|||+|||+ ++|+++|+++|+.| |.|..+.-.+|||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNF---GKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTT----CCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCB---TTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeC---CcEEEEEE
Confidence 35789999999998 99999999999999 555333223799999999999999999999999998 89999999
Q ss_pred cccccc
Q 020917 125 AKKNLF 130 (320)
Q Consensus 125 a~~~~~ 130 (320)
++.+..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 976644
No 242
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=118.99 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=67.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----e----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
..+.++|||+|||.++|+++|+++|+.| |.|..+ . ..+|||||+|.+.++|++|++.|||..|. |
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 82 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKY----GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD---G 82 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT---T
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC---C
Confidence 3568999999999999999999999999 555333 1 13599999999999999999999999998 8
Q ss_pred CeEEEEEcccccc
Q 020917 118 SVLHTEMAKKNLF 130 (320)
Q Consensus 118 r~l~v~~a~~~~~ 130 (320)
+.|+|.|++....
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 83 RELRVQVARYGRR 95 (103)
T ss_dssp BCCEEEECSSCCS
T ss_pred cEEEEEECCcCCC
Confidence 9999999976543
No 243
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=3.4e-16 Score=119.00 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=68.6
Q ss_pred CCCeEEEeCCCC-----CCCHHHHHHhhccCCCeeEEEEEecC-----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCC
Q 020917 222 PCNTLFIGNLGE-----SINEEELRGLFSAQPGFKQMKVLRQE-----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (320)
Q Consensus 222 ~~~~LfV~NL~~-----~~tee~L~~~F~~~G~i~~v~i~~~~-----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~ 291 (320)
++++|+|+||.. +.+++||+++|++||.|.+|+|.++. .+|||||+|.+.++|.+|++.|||+.|.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G--- 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG--- 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT---
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC---
Confidence 578999999963 23789999999999999999998752 38999999999999999999999999999
Q ss_pred ceeEEEeecC
Q 020917 292 VGMRIQYSKN 301 (320)
Q Consensus 292 ~~l~v~~ak~ 301 (320)
|.|+|+|+..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999864
No 244
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=120.43 Aligned_cols=79 Identities=18% Similarity=0.117 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
.+.++|||+|||.++|+++|+++|+.|+.+...++.. ...+|||||+|.+.++|.+|++ |||..|. |+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~---g~~l~V~ 90 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF---GNEIKLE 90 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT---TBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC---CcEEEEE
Confidence 4578999999999999999999999995554433222 2357999999999999999999 9999998 8999999
Q ss_pred Eccccc
Q 020917 124 MAKKNL 129 (320)
Q Consensus 124 ~a~~~~ 129 (320)
|++.+.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 997653
No 245
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=2.6e-16 Score=116.56 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=67.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeC--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+...+ .+|||||+|.+.++|++|++.|||..+. |+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS---GREIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT---TBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEE
Confidence 568999999999999999999999999444333333222 3599999999999999999999999998 89999999
Q ss_pred ccccc
Q 020917 125 AKKNL 129 (320)
Q Consensus 125 a~~~~ 129 (320)
++...
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 97654
No 246
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=1.9e-16 Score=131.96 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=73.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC---CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.++++|||+||+.++++++|+++|++||.|.+|.|..+. .+|||||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G---r~l~V~ 162 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG---RPMDIQ 162 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS---SBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC---EEEEEE
Confidence 457899999999999999999999999999999998654 37999999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99765
No 247
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=122.40 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=67.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
..++|||+|||+++|+++|+++|+.| |.|..+ ...+|||||+|.+.++|++|++.|||..|. |+.|+|+|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF----GSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFH---HVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSS---SSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEEC---CeEEEEEEC
Confidence 46899999999999999999999999 777544 346799999999999999999999999998 899999999
Q ss_pred cccc
Q 020917 126 KKNL 129 (320)
Q Consensus 126 ~~~~ 129 (320)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7654
No 248
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=3.4e-16 Score=119.19 Aligned_cols=84 Identities=18% Similarity=0.206 Sum_probs=67.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.|||..+....|+.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 56899999999999999999999999944333222221 24699999999999999999999999872212799999
Q ss_pred EEcccccc
Q 020917 123 EMAKKNLF 130 (320)
Q Consensus 123 ~~a~~~~~ 130 (320)
.|++.+..
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99976543
No 249
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=119.79 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
....++|||+|||.++|+++|+++|+.| |.|..+ ...+|||||+|.+.++|.+|++.|+|..|. |+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPF----GQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIE---GHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHH----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEEC---CcEEEEE
Confidence 3457899999999999999999999999 666443 345899999999999999999999999998 8999999
Q ss_pred Ecccccc
Q 020917 124 MAKKNLF 130 (320)
Q Consensus 124 ~a~~~~~ 130 (320)
|++.+..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9987654
No 250
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=119.11 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=66.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---C-CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~-~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... + .+|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 97 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQPISV 97 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS---SSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC---CcEEEE
Confidence 56799999999999999999999999944433333222 1 2599999999999999999999999998 899999
Q ss_pred EEcccc
Q 020917 123 EMAKKN 128 (320)
Q Consensus 123 ~~a~~~ 128 (320)
.|++.+
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 999764
No 251
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.66 E-value=4e-16 Score=120.97 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=68.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
++.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++.|||..|. |+.|+|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~---g~~l~V~ 81 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH---GKAIKVE 81 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS---SSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEEE
Confidence 56789999999999999999999999955444333332 23599999999999999999999999998 8999999
Q ss_pred Eccccc
Q 020917 124 MAKKNL 129 (320)
Q Consensus 124 ~a~~~~ 129 (320)
|++...
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 997654
No 252
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.4e-16 Score=120.32 Aligned_cols=81 Identities=16% Similarity=0.291 Sum_probs=68.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---e-CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K-GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~-~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+...++.+ . ..+|||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY---GKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS---SCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEE
Confidence 5689999999999999999999999995543332222 2 34699999999999999999999999997 899999
Q ss_pred EEcccccc
Q 020917 123 EMAKKNLF 130 (320)
Q Consensus 123 ~~a~~~~~ 130 (320)
.|++.+..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99987644
No 253
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=117.42 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=65.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..+.++|||+|||..+++++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 89 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY---GRPINV 89 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC---CCEEEE
Confidence 356899999999999999999999999943333222221 12599999999999999999999999998 899999
Q ss_pred EEccc
Q 020917 123 EMAKK 127 (320)
Q Consensus 123 ~~a~~ 127 (320)
.|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99863
No 254
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=2.9e-16 Score=115.55 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=66.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
...++|||+|||+++|+++|+++|+.| .+....+. ..+|||||+|.+.++|++|++.|||..+. |+.|+|+|+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~V~~a~ 76 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFR---GKDLIVQLQP 76 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEET---TEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeEC---CcEEEEEEcC
Confidence 357899999999999999999999999 55554442 56799999999999999999999999998 8999999996
Q ss_pred cc
Q 020917 127 KN 128 (320)
Q Consensus 127 ~~ 128 (320)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 255
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=8.3e-17 Score=118.98 Aligned_cols=77 Identities=10% Similarity=-0.005 Sum_probs=60.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCC--CccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLP--GYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~--~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
.+|||+|||+++|+++|+++|+.|+ .+....+... .++|||||+|.+.++|++|++.|||..+. |+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~---gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---GQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS---SCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC---CEEEEEE
Confidence 5799999999999999999999996 4444333332 23599999999999999999999999998 8999999
Q ss_pred Eccccc
Q 020917 124 MAKKNL 129 (320)
Q Consensus 124 ~a~~~~ 129 (320)
++.+..
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 997653
No 256
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=117.90 Aligned_cols=80 Identities=8% Similarity=0.047 Sum_probs=67.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCcc-ccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCe-
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYE-ASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV- 119 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~-~~iv~~-~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~- 119 (320)
..+.++|||+|||.++|+++|+++|+.|+.+. ...+.. + ..+|||||+|.+.++|++|++.|||..+. |+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~~ 82 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP---GATP 82 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES---SCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC---CCCc
Confidence 35689999999999999999999999996554 332322 2 13599999999999999999999999998 788
Q ss_pred ---EEEEEcccc
Q 020917 120 ---LHTEMAKKN 128 (320)
Q Consensus 120 ---l~v~~a~~~ 128 (320)
|+|+|++..
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 999999754
No 257
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.66 E-value=2.4e-16 Score=120.82 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=62.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||.++|+++|+++|+.|+.+..+.+... ..+|||||+|.+.++|++|++.+ |..+. |+.|+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~---g~~l~ 97 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD---SKTID 97 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET---TEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC---CEEEE
Confidence 356899999999999999999999999944333222221 23699999999999999999966 57787 89999
Q ss_pred EEEccccc
Q 020917 122 TEMAKKNL 129 (320)
Q Consensus 122 v~~a~~~~ 129 (320)
|.++..+.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99997654
No 258
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=6.2e-16 Score=117.16 Aligned_cols=80 Identities=11% Similarity=0.184 Sum_probs=66.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---C-CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~-~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||.++|+++|+++|+.| ++....+... + .+|||||+|.+.++|++|+ .|||..|. |+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~-gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG---DRSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTS-CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET---TEECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC-CceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC---CeEEE
Confidence 3568999999999999999999999999 3333223221 1 2599999999999999999 79999998 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|.|++.+..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999976543
No 259
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=8e-16 Score=113.78 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=66.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee-C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~-~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
.+.++|||+|||+++|+++|+++|+.| .+....+... + .+|||||+|.+.++|.+|++ |||..|. |+.|+|.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~---gr~i~v~ 82 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG---GRYIEVF 82 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET---TEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC---CcEEEEE
Confidence 567899999999999999999999999 5544433332 2 25999999999999999999 9999998 8999999
Q ss_pred Ecccc
Q 020917 124 MAKKN 128 (320)
Q Consensus 124 ~a~~~ 128 (320)
+++.+
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 99765
No 260
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.8e-16 Score=118.91 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=68.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccc--------cEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeC
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEA--------SQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~--------~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~ 113 (320)
..+.++|||+|||.++|+++|+++|+.|+.+.. ..+... ..+|||||+|.+.++|.+|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 356899999999999999999999999966552 112221 13599999999999999999999999998
Q ss_pred cCCCCeEEEEEcccccc
Q 020917 114 AETKSVLHTEMAKKNLF 130 (320)
Q Consensus 114 ~~~gr~l~v~~a~~~~~ 130 (320)
|+.|+|.|++.+..
T Consensus 92 ---g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 ---GSKLKVSLARKKPP 105 (113)
T ss_dssp ---TEECEEECSSCCCC
T ss_pred ---CCEEEEEECCCCCC
Confidence 89999999976543
No 261
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.4e-16 Score=119.84 Aligned_cols=74 Identities=8% Similarity=0.095 Sum_probs=67.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
..+|||+|||++++++||+++|++| .|.+|+|+.+.. +|||||+|.+.++|.+|| .|||..|.| |.|+|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g---r~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ---RYVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT---EEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC---eEEEEEEC
Confidence 5789999999999999999999999 899999986543 899999999999999999 699999999 99999887
Q ss_pred cC
Q 020917 300 KN 301 (320)
Q Consensus 300 k~ 301 (320)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 262
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.3e-16 Score=117.31 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=65.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e---C-CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~---~-~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
.+.++|||+|||.++|+++|+++|+.|+ +....+.. + + .+|||||+|.+.++|++|+ .|||..|. |+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---NKRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET---TEECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC---CcEEE
Confidence 4579999999999999999999999993 22211211 1 1 2599999999999999999 89999998 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|.|++.+..
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987654
No 263
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=2.6e-16 Score=115.29 Aligned_cols=71 Identities=21% Similarity=0.465 Sum_probs=66.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccC----C-------CeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCC
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQ----P-------GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~----G-------~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~ 290 (320)
+.++|||+|||.++++++|+++|++| | .|.++++.+ ++|||||+|.+.++|.+|+ .|||..|.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~~g-- 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQG-- 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEETT--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEECC--
Confidence 46899999999999999999999999 8 899999974 4799999999999999999 999999999
Q ss_pred CceeEEEe
Q 020917 291 SVGMRIQY 298 (320)
Q Consensus 291 ~~~l~v~~ 298 (320)
+.|+|+.
T Consensus 80 -~~l~V~r 86 (87)
T 2hzc_A 80 -QSLKIRR 86 (87)
T ss_dssp -EECEEEC
T ss_pred -eEEEEeC
Confidence 8999974
No 264
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=122.17 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCC---eeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPG---FKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~---i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..++|||+|||+++|+++|+++|+.||. |.+|+|+.+.. +|||||+|.+.++|.+||+ |||..|.| +.|+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g---r~i~ 85 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ---RYVE 85 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS---SCCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC---eEEE
Confidence 4789999999999999999999999887 89999986543 7899999999999999999 99999999 8999
Q ss_pred EEeecCC
Q 020917 296 IQYSKNP 302 (320)
Q Consensus 296 v~~ak~~ 302 (320)
|.++...
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998653
No 265
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=113.75 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=66.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
..+.++|||+|| ++|+++|+++|+.| |.|..+ ...+|||||+|.+.++|.+|++.|||..|. |+.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~----G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVE---SVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTT----SCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEET---TEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhC----CCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEE
Confidence 356789999996 89999999999999 666433 456799999999999999999999999998 8999999
Q ss_pred Ecccccc
Q 020917 124 MAKKNLF 130 (320)
Q Consensus 124 ~a~~~~~ 130 (320)
|++.+..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9976543
No 266
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=8.6e-16 Score=114.93 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=67.6
Q ss_pred CCcceEEEcCCCCCCCHHHHH----HHhhhCCCccccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 47 DEVRTIFITGLPDDVKERELQ----NLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~----~lF~~~~~~~~~iv~~~-----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
.+.++|||+|||.++|+++|+ ++|+.| |.|..+. ..+|||||+|.+.++|.+|++.|||..+. |
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~----G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 78 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRF----GQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY---D 78 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG----SCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET---T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC----CCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC---C
Confidence 568999999999999999999 999999 6664442 23699999999999999999999999998 8
Q ss_pred CeEEEEEcccccc
Q 020917 118 SVLHTEMAKKNLF 130 (320)
Q Consensus 118 r~l~v~~a~~~~~ 130 (320)
+.|+|.|++.+..
T Consensus 79 ~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 79 KPMRIQYAKTDSD 91 (97)
T ss_dssp EECEEEECSSCCT
T ss_pred cEEEEEEccCCCc
Confidence 9999999987654
No 267
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=7.7e-17 Score=121.60 Aligned_cols=77 Identities=23% Similarity=0.344 Sum_probs=61.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeC-----CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG-----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~-----~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
...++|||+|||.++|+++|+++|+.|+ +....+.... .+|||||+|.+.++|.+|+ .|||..|. |+.|+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~---g~~l~ 91 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---NRRIR 91 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT---TBCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC---CeEEE
Confidence 4589999999999999999999999993 2222121111 3699999999999999999 79999998 89999
Q ss_pred EEEcccc
Q 020917 122 TEMAKKN 128 (320)
Q Consensus 122 v~~a~~~ 128 (320)
|++++.+
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999764
No 268
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=7.1e-16 Score=121.03 Aligned_cols=82 Identities=13% Similarity=0.061 Sum_probs=65.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcce-EEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPM-GFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~-aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
....+|||+||++.+|+++|+++|+.|+.+...++. +..+|| |||+|.+.++|.+|++.|||..|+. .++.|+|+|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~-~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~~~LrI~~a 103 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRIDFS 103 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEE-EETTEEEEEEEESCHHHHHHHHHHHTTCEEET-TEEEEEEEEC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEE-cCCCCcEEEEEECCHHHHHHHHHHcCCCeecC-CCcEEEEEec
Confidence 345678899999999999999999999433332222 334677 9999999999999999999999972 1289999999
Q ss_pred ccccc
Q 020917 126 KKNLF 130 (320)
Q Consensus 126 ~~~~~ 130 (320)
+.+.-
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87654
No 269
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=8.9e-16 Score=126.00 Aligned_cols=79 Identities=16% Similarity=0.341 Sum_probs=73.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
++++|||+|||.++++++|+++|++||.|.+++++++.. +|||||+|.+.++|..|++.|||..+.| +.|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN---KRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT---EECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCC---cEEEEE
Confidence 468999999999999999999999999999999987643 6899999999999999999999999999 999999
Q ss_pred eecCCC
Q 020917 298 YSKNPF 303 (320)
Q Consensus 298 ~ak~~~ 303 (320)
|++..-
T Consensus 79 ~~~~~~ 84 (168)
T 1b7f_A 79 YARPGG 84 (168)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 998763
No 270
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.65 E-value=5.2e-16 Score=115.65 Aligned_cols=77 Identities=13% Similarity=0.029 Sum_probs=64.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+.. + ..+|||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---gr~l~v 89 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---SRKVKL 89 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC---CcEEEE
Confidence 4568999999999999999999999996655433333 2 13599999999999999999999999998 899999
Q ss_pred EEcc
Q 020917 123 EMAK 126 (320)
Q Consensus 123 ~~a~ 126 (320)
+++.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9885
No 271
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=121.51 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=66.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
...++|||+|||.++|+++|+++|+.|+.+....+.. + ..+|||||+|.+.++|++|+ .|||..|. |+.|+|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL---GVPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET---TEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC---CeEEEE
Confidence 4578999999999999999999999994333222222 1 23699999999999999999 89999998 899999
Q ss_pred EEcccccc
Q 020917 123 EMAKKNLF 130 (320)
Q Consensus 123 ~~a~~~~~ 130 (320)
.|++.+..
T Consensus 99 ~~a~~~~~ 106 (114)
T 2cq4_A 99 QASQAEKN 106 (114)
T ss_dssp EEHHHHHH
T ss_pred EecCCCcc
Confidence 99976543
No 272
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=119.84 Aligned_cols=79 Identities=20% Similarity=0.205 Sum_probs=65.5
Q ss_pred CCCcceEEE--cCCCCCCCHHHHHHHhhhCCCccccEEE--eeCCcceEEEEeCCHHHHHHHHHHhcCcee-C-cCCCCe
Q 020917 46 HDEVRTIFI--TGLPDDVKERELQNLLRWLPGYEASQVN--YKGEKPMGFALFSTAQLAVAAKDALQEMIF-D-AETKSV 119 (320)
Q Consensus 46 ~~~~~~L~V--~nLp~~~tee~L~~lF~~~~~~~~~iv~--~~~~kg~aFV~F~~~e~A~~A~~~lng~~~-~-~~~gr~ 119 (320)
..++++||| +||++++|+++|+++|+.| |.|.. +...||||||+|.+.++|++|++.|||..+ . ...|++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~f----G~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHH----SCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhc----CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 356889999 7799999999999999999 55533 334689999999999999999999999988 1 111799
Q ss_pred EEEEEcccc
Q 020917 120 LHTEMAKKN 128 (320)
Q Consensus 120 l~v~~a~~~ 128 (320)
|.|.|++..
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999998643
No 273
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.64 E-value=3.9e-16 Score=123.69 Aligned_cols=80 Identities=20% Similarity=0.178 Sum_probs=66.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccc--cEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCc----eeCcC
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEA--SQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEM----IFDAE 115 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~--~iv~~-~---~~kg~aFV~F~~~e~A~~A~~~lng~----~~~~~ 115 (320)
..+.++|||+|||+++|+++|+++|+.|+.+.. ..|.. + ..||||||+|.+. +|.+|++.|||. .+.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~-- 96 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID-- 96 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC--
Confidence 356789999999999999999999999966544 22222 2 2369999999999 999999999999 887
Q ss_pred CCCeEEEEEccccc
Q 020917 116 TKSVLHTEMAKKNL 129 (320)
Q Consensus 116 ~gr~l~v~~a~~~~ 129 (320)
|+.|+|.|++...
T Consensus 97 -gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 -GKTINVEFAKGSK 109 (131)
T ss_dssp -GCCCCCEECCCSC
T ss_pred -CEEEEEEECCCCC
Confidence 8999999997653
No 274
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=9.1e-16 Score=125.62 Aligned_cols=78 Identities=19% Similarity=0.387 Sum_probs=72.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
+++|||+|||.++++++|+++|++||.|.+++++++.. +|||||+|.+.++|.+|++.|||..+.| +.|+|.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT---KTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCC---ceEEEEe
Confidence 68999999999999999999999999999999987652 6899999999999999999999999999 9999999
Q ss_pred ecCCC
Q 020917 299 SKNPF 303 (320)
Q Consensus 299 ak~~~ 303 (320)
++...
T Consensus 79 ~~~~~ 83 (167)
T 1fxl_A 79 ARPSS 83 (167)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 98763
No 275
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=8.9e-17 Score=114.46 Aligned_cols=71 Identities=18% Similarity=0.376 Sum_probs=65.3
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 225 ~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
+|||+|||.++++++|+++|++||.|.++++..+. .+|||||+|.+.++|.+|++ ++|..|.| +.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g---~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGL---SKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTT---BCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECC---EEEEEEEC
Confidence 59999999999999999999999999999997653 28999999999999999997 59999999 89999885
No 276
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=9.3e-16 Score=117.63 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=65.6
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 47 DEVRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 47 ~~~~~L~V~nLp~~-~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
...++|||+|||.+ +|+++|+++|+.|+.+..+.+ .+|||||+|.+.++|++|++.|||..|. |+.|+|+|+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLA---GQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEET---TEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEEC
Confidence 45789999999999 999999999999944333333 5799999999999999999999999998 899999999
Q ss_pred ccc
Q 020917 126 KKN 128 (320)
Q Consensus 126 ~~~ 128 (320)
+..
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 277
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=120.19 Aligned_cols=80 Identities=13% Similarity=0.277 Sum_probs=66.6
Q ss_pred CCcceEEEcCCCCCCCHHHHH---HHhhhCCCccccEEEee-------CCcceEEEEeCCHHHHHHHHHHhcCceeCcCC
Q 020917 47 DEVRTIFITGLPDDVKERELQ---NLLRWLPGYEASQVNYK-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~---~lF~~~~~~~~~iv~~~-------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~ 116 (320)
.+.++|||+|||+++++++|+ ++|+.|+.+....+... ..+|||||+|.+.++|++|++.|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~--- 89 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD--- 89 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET---
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC---
Confidence 457899999999999999999 99999944433333221 12489999999999999999999999998
Q ss_pred CCeEEEEEccccc
Q 020917 117 KSVLHTEMAKKNL 129 (320)
Q Consensus 117 gr~l~v~~a~~~~ 129 (320)
|+.|+|+|++.+.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 8999999997664
No 278
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=1.2e-15 Score=116.95 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=65.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
.+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|.+|++.|||..+. |+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~ 96 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM---GQ 96 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---Cc
Confidence 568999999999999999999999999 5553331 12599999999999999999999999998 89
Q ss_pred eEEEEEcccc
Q 020917 119 VLHTEMAKKN 128 (320)
Q Consensus 119 ~l~v~~a~~~ 128 (320)
.|+|.|++.+
T Consensus 97 ~l~V~~a~~~ 106 (110)
T 1oo0_B 97 TIQVDWCFVK 106 (110)
T ss_dssp ECEEEESEES
T ss_pred EEEEEEcccC
Confidence 9999999765
No 279
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=118.09 Aligned_cols=81 Identities=19% Similarity=0.326 Sum_probs=68.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||..+|+++|+++|+.|+.+....+... + .+|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 82 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS---GRALRV 82 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS---SSCBEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---CcEEEE
Confidence 45789999999999999999999999955544433332 1 2599999999999999999999999998 899999
Q ss_pred EEcccccc
Q 020917 123 EMAKKNLF 130 (320)
Q Consensus 123 ~~a~~~~~ 130 (320)
.|++.+..
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 99987654
No 280
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=3.2e-16 Score=117.08 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=66.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-eC--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..+.++|||+|||.++|+++|+++|+.| +.|..+ .+ .+|||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 85 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSVSL 85 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE----EEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEET---TEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC----CcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 3568999999999999999999999999 555332 22 3599999999999999999999999998 899999
Q ss_pred EEccccc
Q 020917 123 EMAKKNL 129 (320)
Q Consensus 123 ~~a~~~~ 129 (320)
.|++.+.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9997653
No 281
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.64 E-value=8e-16 Score=117.28 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=65.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..+.++|||+|||..+|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 102 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD---GRPMNI 102 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEE
Confidence 356899999999999999999999999944332222221 12599999999999999999999999998 899999
Q ss_pred EEcc
Q 020917 123 EMAK 126 (320)
Q Consensus 123 ~~a~ 126 (320)
.|+.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 282
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-15 Score=117.05 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=65.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
...+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++.|++ .|. |+.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~---g~~l 88 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID---GRKA 88 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET---TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC---CEEE
Confidence 3456899999999999999999999999933322222221 1359999999999999999999998 787 8999
Q ss_pred EEEEccccc
Q 020917 121 HTEMAKKNL 129 (320)
Q Consensus 121 ~v~~a~~~~ 129 (320)
+|.|++...
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 999997653
No 283
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.64 E-value=3.6e-16 Score=135.48 Aligned_cols=76 Identities=14% Similarity=0.377 Sum_probs=69.9
Q ss_pred CCCeEEEeCCCCCC---------CHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCee------
Q 020917 222 PCNTLFIGNLGESI---------NEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI------ 286 (320)
Q Consensus 222 ~~~~LfV~NL~~~~---------tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l------ 286 (320)
.+++|||+||+..+ +|++|+++|++||.|.+|+|+. .+|||||+|.+.++|+.|+++|||..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 57999999999998 7999999999999999999985 579999999999999999999999999
Q ss_pred ------CCCCCceeEEEeecCC
Q 020917 287 ------PSSGSVGMRIQYSKNP 302 (320)
Q Consensus 287 ------~g~~~~~l~v~~ak~~ 302 (320)
.| +.|.|.||+..
T Consensus 211 e~~~~~~g---r~L~V~wA~~~ 229 (240)
T 3u1l_A 211 EWDDRREG---TGLLVKWANED 229 (240)
T ss_dssp TGGGGGGS---CCCEEEECC--
T ss_pred cccccCCC---CEEEEEEccCC
Confidence 67 89999999865
No 284
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=3.6e-15 Score=116.82 Aligned_cols=81 Identities=12% Similarity=0.192 Sum_probs=68.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..+.++|||+|||.++++++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V 108 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD---GRPMDI 108 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS---SCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC---CcEEEE
Confidence 356899999999999999999999999955444333332 14699999999999999999999999998 899999
Q ss_pred EEccccc
Q 020917 123 EMAKKNL 129 (320)
Q Consensus 123 ~~a~~~~ 129 (320)
+||....
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9997643
No 285
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.1e-16 Score=114.59 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=65.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCcccc-EEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEAS-QVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~-iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
...++|||+|||+++|+++|+++|+.|+.+... .+......|.|||+|.+.++|.+|++.|||..+. |+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE---NFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS---SCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEEc
Confidence 457899999999999999999999999433332 1222223466999999999999999999999998 899999999
Q ss_pred ccc
Q 020917 126 KKN 128 (320)
Q Consensus 126 ~~~ 128 (320)
+++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 765
No 286
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=116.42 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=66.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-eC--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+.. +. .+|||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 88 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF---DRPMHV 88 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC---CCEEEE
Confidence 35689999999999999999999999994333222222 12 2599999999999999999999999998 899999
Q ss_pred EEcccc
Q 020917 123 EMAKKN 128 (320)
Q Consensus 123 ~~a~~~ 128 (320)
.|++..
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 998653
No 287
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=3.3e-16 Score=118.11 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=66.0
Q ss_pred CCcceEEEcCCCC------CCCHHHHHHHhhhCCCccccEEEee---C-CcceEEEEeCCHHHHHHHHHHhcCceeCcCC
Q 020917 47 DEVRTIFITGLPD------DVKERELQNLLRWLPGYEASQVNYK---G-EKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (320)
Q Consensus 47 ~~~~~L~V~nLp~------~~tee~L~~lF~~~~~~~~~iv~~~---~-~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~ 116 (320)
...++|||+|||. ++++++|+++|+.|+.+....+... + ++|||||+|.+.++|.+|++.|||..+.
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~--- 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD--- 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS---
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC---
Confidence 4578999999999 9999999999999933332222221 1 3599999999999999999999999998
Q ss_pred C-CeEEEEEccccc
Q 020917 117 K-SVLHTEMAKKNL 129 (320)
Q Consensus 117 g-r~l~v~~a~~~~ 129 (320)
| +.|+|.++.+..
T Consensus 81 g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 81 LKHRLFLYTMKDVE 94 (100)
T ss_dssp SSCBCEEEESHHHH
T ss_pred CCeEEEEEECchhh
Confidence 7 999999997653
No 288
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.5e-16 Score=126.98 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
..++|||+|||+++|++||+++|++|| |++|+|+.+.+ +|||||+|.+.++|.+|| .|||..|.| +.|+|.+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g---R~i~V~~ 119 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH---RYIELFL 119 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS---CCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC---EEEEEEE
Confidence 467899999999999999999999999 77999986543 899999999999999999 899999999 8999999
Q ss_pred ecCCCC
Q 020917 299 SKNPFG 304 (320)
Q Consensus 299 ak~~~~ 304 (320)
+..+-.
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 887743
No 289
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=118.47 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=67.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++. +|..|. |+.|+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~---g~~l~ 99 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID---GRVVE 99 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET---TEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC---CEEEE
Confidence 345799999999999999999999999955544433332 2369999999999999999997 999998 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|.|++.+..
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 999987654
No 290
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.5e-16 Score=117.56 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=66.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhh-CCCccccEEEe-eC--CcceEEEEeCCHHHHHHHHHHhcCce-eCcCCCCeEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRW-LPGYEASQVNY-KG--EKPMGFALFSTAQLAVAAKDALQEMI-FDAETKSVLH 121 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~-~~~~~~~iv~~-~~--~kg~aFV~F~~~e~A~~A~~~lng~~-~~~~~gr~l~ 121 (320)
.+.++|||+|||.++|+++|+++|+. |+.+....+.. ++ .+|||||+|.+.++|.+|++.|||.. +. |+.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~---g~~l~ 83 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG---SKPVR 83 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS---SSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC---CEeEE
Confidence 56789999999999999999999999 94433322222 11 35999999999999999999999999 87 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|.|++.+..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976543
No 291
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=118.15 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=66.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCc-cccEEEe-e--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGY-EASQVNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~-~~~iv~~-~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||+++|+++|+++|+.|+.+ ....+.. + ..+|||||+|.+.++|++||+. ||..|. |+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~---gr~i~ 87 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN---GREAF 87 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET---TEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC---CeEEE
Confidence 3567999999999999999999999999555 2222222 2 2469999999999999999996 999998 89999
Q ss_pred EEEccccc
Q 020917 122 TEMAKKNL 129 (320)
Q Consensus 122 v~~a~~~~ 129 (320)
|.++..+.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997654
No 292
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.5e-16 Score=117.11 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=65.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+... .++|||||+|.+.++|.+|++ ++|..+. |+.|+|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~---gr~l~V 83 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK---ETDLLI 83 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT---TTTCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC---CEEEEE
Confidence 345799999999999999999999999943333222221 246999999999999999999 9999998 899999
Q ss_pred EEcccc
Q 020917 123 EMAKKN 128 (320)
Q Consensus 123 ~~a~~~ 128 (320)
.|+...
T Consensus 84 ~~~~~~ 89 (103)
T 1s79_A 84 LFKDDY 89 (103)
T ss_dssp EEHHHH
T ss_pred EEchHH
Confidence 998654
No 293
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=3.8e-16 Score=124.38 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=67.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~---g~~l~ 120 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD---GRELR 120 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS---SSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 455789999999999999999999999954433322221 23699999999999999999999999998 89999
Q ss_pred EEEccccc
Q 020917 122 TEMAKKNL 129 (320)
Q Consensus 122 v~~a~~~~ 129 (320)
|.|++...
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99997654
No 294
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=2.4e-15 Score=120.19 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=64.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCcCC
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~ 116 (320)
...+.++|||+|||.++|+++|+++|+.| |.|..++ ..+|||||+|.+.++|++|++.|||..|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 131 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--- 131 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET---
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhc----CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 34568999999999999999999999999 5553331 23699999999999999999999999998
Q ss_pred CCeEEEEEc
Q 020917 117 KSVLHTEMA 125 (320)
Q Consensus 117 gr~l~v~~a 125 (320)
|+.|+|.||
T Consensus 132 g~~l~v~~A 140 (140)
T 2ku7_A 132 GRTIRVNLA 140 (140)
T ss_dssp TEEEEEEC-
T ss_pred CEEEEEEeC
Confidence 899999986
No 295
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=4.3e-16 Score=122.10 Aligned_cols=79 Identities=13% Similarity=0.194 Sum_probs=65.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|+ .|||..|. |+.|+|
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~V 109 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR---GRTIKV 109 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC---CeEEEE
Confidence 34789999999999999999999999944433333222 23699999999999999999 79999998 899999
Q ss_pred EEccccc
Q 020917 123 EMAKKNL 129 (320)
Q Consensus 123 ~~a~~~~ 129 (320)
.|++...
T Consensus 110 ~~a~~~~ 116 (124)
T 2jwn_A 110 LPKRTNM 116 (124)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9997543
No 296
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=118.90 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=67.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccE-EEee-C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYK-G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i-v~~~-~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||+++|+++|+++|+.|+.+...+ +..+ + .+|||||+|.+.++|++||+ |||..|. |+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---gr~i~ 97 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG---NRFIQ 97 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST---TSCBE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC---CcEEE
Confidence 35678999999999999999999999996665533 3332 2 35999999999999999999 9999998 89999
Q ss_pred EEEccccc
Q 020917 122 TEMAKKNL 129 (320)
Q Consensus 122 v~~a~~~~ 129 (320)
|.++..+.
T Consensus 98 V~~a~~~~ 105 (124)
T 1wel_A 98 VHPITKKG 105 (124)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997654
No 297
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=8.3e-16 Score=133.37 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=73.7
Q ss_pred CCCCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 220 NPPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 220 ~~~~~~LfV~NL~~-~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
.+++++|||+|||. ++++++|+++|++||.|.+|+++++. +|||||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g---~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHG---KPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSS---SBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEEE
Confidence 34689999999999 99999999999999999999998754 7999999999999999999999999999 8999999
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
++..
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9865
No 298
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=7.1e-15 Score=114.73 Aligned_cols=79 Identities=18% Similarity=0.066 Sum_probs=63.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcce-EEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEccc
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPM-GFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~-aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~ 127 (320)
...|||+||++.+|+++|+++|+.|+.+...++. +. +|| |||+|.+.++|.+|++.|||..|+. .++.|+|+||+.
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~-~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g-~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KR-NGIQAMVEFESVLCAQKAKAALNGADIYA-GCCTLKIEYARP 101 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEE-ES-SSEEEEEEESSHHHHHHHHHHHTTCCCBT-TBSEEEEECCSC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEE-eC-CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCeEEEEEEecC
Confidence 4457899999999999999999999443333332 22 486 9999999999999999999999972 016999999987
Q ss_pred ccc
Q 020917 128 NLF 130 (320)
Q Consensus 128 ~~~ 130 (320)
+..
T Consensus 102 ~~l 104 (124)
T 2e5i_A 102 TRL 104 (124)
T ss_dssp SCC
T ss_pred Ccc
Confidence 754
No 299
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=118.40 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=66.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCC---ccccEEEe-e--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCe
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPG---YEASQVNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~---~~~~iv~~-~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~ 119 (320)
..+.++|||+|||+++|+++|+++|+.|+. +....+.. + ..+|||||+|.+.++|++|++ |||..|. ||.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---gr~ 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG---HRY 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET---TEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC---CeE
Confidence 356889999999999999999999999955 33333332 2 235999999999999999999 9999998 899
Q ss_pred EEEEEccccc
Q 020917 120 LHTEMAKKNL 129 (320)
Q Consensus 120 l~v~~a~~~~ 129 (320)
|+|.+++.+.
T Consensus 90 i~V~~a~~~~ 99 (118)
T 2db1_A 90 IEVFKSHRTE 99 (118)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999996543
No 300
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=1.9e-15 Score=122.50 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=67.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..+.++|||+|||.++|+++|+++|+.| |.|..+ +..+|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 142 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYY----GPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLC---GCRVRV 142 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHH----SCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSS---SSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhh----CCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 3568999999999999999999999999 666443 235799999999999999999999999997 899999
Q ss_pred EEcccc
Q 020917 123 EMAKKN 128 (320)
Q Consensus 123 ~~a~~~ 128 (320)
.|++.+
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999765
No 301
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.62 E-value=2.1e-15 Score=118.42 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=66.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----e--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
.+.++|||+|||.++|+++|+++|+.| |.|..+ . + .+|||||+|.+.++|++|++.|||..|. |+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 92 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQ 92 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS---SS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---Ce
Confidence 457899999999999999999999999 555333 1 1 2699999999999999999999999998 89
Q ss_pred eEEEEEcccccc
Q 020917 119 VLHTEMAKKNLF 130 (320)
Q Consensus 119 ~l~v~~a~~~~~ 130 (320)
.|+|.|++.+..
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 999999976543
No 302
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.8e-15 Score=123.65 Aligned_cols=77 Identities=21% Similarity=0.415 Sum_probs=71.9
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
++|||+|||.++|+++|+++|++||.|.+++++++.. +|||||+|.+.++|.+|++.|||..+.| +.|+|.|++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIEN---NIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETT---EECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCC---CeeEEEEcC
Confidence 5899999999999999999999999999999986553 7899999999999999999999999999 999999997
Q ss_pred CCC
Q 020917 301 NPF 303 (320)
Q Consensus 301 ~~~ 303 (320)
..-
T Consensus 78 ~~~ 80 (166)
T 3md3_A 78 QSQ 80 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 303
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=1.8e-15 Score=110.86 Aligned_cols=76 Identities=21% Similarity=0.389 Sum_probs=62.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---C-CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~-~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||.++|+++|+++|+.|+.+....+... + .+|||||+|.+.++|.+|++ +++..+. |+.|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD---GRVID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET---TEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC---CEEEE
Confidence 356899999999999999999999999944443333322 1 25999999999999999997 6888887 89999
Q ss_pred EEEc
Q 020917 122 TEMA 125 (320)
Q Consensus 122 v~~a 125 (320)
|.+|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9886
No 304
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=1.1e-15 Score=121.62 Aligned_cols=80 Identities=13% Similarity=0.097 Sum_probs=66.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCC---ccccEEEe-e--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPG---YEASQVNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~---~~~~iv~~-~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
...+.++|||+|||+++|+++|+++|+.|+. +....+.. + .++|||||+|.+.++|++|++ |||..|. ||
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~---gr 115 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG---HR 115 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS---SS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC---CE
Confidence 3456889999999999999999999999965 33333332 2 235999999999999999999 9999998 89
Q ss_pred eEEEEEcccc
Q 020917 119 VLHTEMAKKN 128 (320)
Q Consensus 119 ~l~v~~a~~~ 128 (320)
.|+|.++..+
T Consensus 116 ~i~V~~a~~~ 125 (136)
T 2hgl_A 116 YIEVFKSHRT 125 (136)
T ss_dssp EEEEEECCHH
T ss_pred EEEEEECChH
Confidence 9999998654
No 305
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=1.3e-15 Score=112.00 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=64.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|+ .|||..+. |+.|+|.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~---g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR---GRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET---TEECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC---CcEEEEE
Confidence 4689999999999999999999999944433323221 23699999999999999999 89999998 8999999
Q ss_pred Ecccc
Q 020917 124 MAKKN 128 (320)
Q Consensus 124 ~a~~~ 128 (320)
+++.+
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 99754
No 306
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=9.4e-16 Score=116.52 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=67.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
...+.++|||+|||.++|+++|+++|+.|+.+..+.+... ..+|||||+|.+.++|.+|++. +|..|. |+.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g~~l 87 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD---GRNI 87 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET---TEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC---CEEE
Confidence 3467899999999999999999999999944433333222 1259999999999999999998 999998 8999
Q ss_pred EEEEcccccc
Q 020917 121 HTEMAKKNLF 130 (320)
Q Consensus 121 ~v~~a~~~~~ 130 (320)
+|.|++.+..
T Consensus 88 ~V~~a~~~~~ 97 (105)
T 2dh8_A 88 DPKPCTPRGM 97 (105)
T ss_dssp BCCCSCCSSC
T ss_pred EEEEccCCCC
Confidence 9999976643
No 307
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-15 Score=114.54 Aligned_cols=84 Identities=15% Similarity=0.290 Sum_probs=66.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee-C--CcceEEEEeCCHHHHHHHHHHhcCceeCcC-----C
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-G--EKPMGFALFSTAQLAVAAKDALQEMIFDAE-----T 116 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~-~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~-----~ 116 (320)
...+.++|||+|||.++|+++|+++|+.|+.+....+... + .+|||||+|.+.++|.+|++.|||..+... .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456789999999999999999999999944333323221 1 359999999999999999999999998311 2
Q ss_pred CCeEEEEEcccc
Q 020917 117 KSVLHTEMAKKN 128 (320)
Q Consensus 117 gr~l~v~~a~~~ 128 (320)
+++|+|.|+++.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 789999999754
No 308
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=115.89 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=65.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCC-ccccEEE-e-e---CCcceEEEEeCCHHHHHHHHHHhc--CceeCcCCCC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPG-YEASQVN-Y-K---GEKPMGFALFSTAQLAVAAKDALQ--EMIFDAETKS 118 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~-~~~~iv~-~-~---~~kg~aFV~F~~~e~A~~A~~~ln--g~~~~~~~gr 118 (320)
.+.++|||+|||.++|+++|+++|+.|+. +....+. . + ..+|||||+|.+.++|.+|++.|+ +..+. |+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~---g~ 82 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW---GH 82 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT---TB
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec---CC
Confidence 46889999999999999999999999943 3322222 1 1 246999999999999999999996 58887 89
Q ss_pred eEEEEEcccccc
Q 020917 119 VLHTEMAKKNLF 130 (320)
Q Consensus 119 ~l~v~~a~~~~~ 130 (320)
.|+|.|++.+..
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 999999976543
No 309
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=2.2e-15 Score=134.51 Aligned_cols=81 Identities=32% Similarity=0.482 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHH----HhhccCCCeeEEEEEecC-CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCcee
Q 020917 220 NPPCNTLFIGNLGESINEEELR----GLFSAQPGFKQMKVLRQE-RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~----~~F~~~G~i~~v~i~~~~-~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l 294 (320)
..++++|||+||+.++++++|+ ++|++||.|.+|++.+.. .+|||||+|.+.++|.+|++.|||..|.| +.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD---KPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCC---cEE
Confidence 3468999999999999999977 899999999999998533 38999999999999999999999999999 999
Q ss_pred EEEeecCCC
Q 020917 295 RIQYSKNPF 303 (320)
Q Consensus 295 ~v~~ak~~~ 303 (320)
+|.|++...
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997763
No 310
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.3e-15 Score=111.92 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=65.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---C-CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~-~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
...+.++|||+|||.++|+++|+++|+.|+.+..+.+... + .+|||||+|.+.++|.+|++ ++..|. |+.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~---g~~l 85 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID---GRWC 85 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET---TEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC---CeEE
Confidence 3456889999999999999999999999944433333222 1 25999999999999999998 477787 8999
Q ss_pred EEEEcccccc
Q 020917 121 HTEMAKKNLF 130 (320)
Q Consensus 121 ~v~~a~~~~~ 130 (320)
+|.|+..+..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999987644
No 311
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=3.3e-15 Score=141.39 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+||+..+|+++|+++|++||.|+.|.|+.+. .+|||||+|.+.++|..||..|||..|.| +.|+|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g---r~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG---RRVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC---EEEEEE
Confidence 57899999999999999999999999999999998653 28999999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++..
T Consensus 178 ~a~~~ 182 (437)
T 3pgw_S 178 VERGR 182 (437)
T ss_pred EeCCC
Confidence 99865
No 312
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=120.74 Aligned_cols=80 Identities=13% Similarity=0.184 Sum_probs=68.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCcccc-------EEEe-e-CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEAS-------QVNY-K-GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~-------iv~~-~-~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
.++++|||+|||+++|+++|+++|+.|+.+..+ +... . ..+|||||+|.+.++|.+|++.|||..|. |
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~---g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF---G 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET---T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC---C
Confidence 568999999999999999999999999766553 2212 2 34699999999999999999999999998 8
Q ss_pred CeEEEEEccccc
Q 020917 118 SVLHTEMAKKNL 129 (320)
Q Consensus 118 r~l~v~~a~~~~ 129 (320)
+.|+|.|++...
T Consensus 120 ~~l~V~~a~~~~ 131 (143)
T 3egn_A 120 KPMVVQFARSAR 131 (143)
T ss_dssp EECEEEECCCSC
T ss_pred cEEEEEECCCCC
Confidence 999999997653
No 313
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-16 Score=114.71 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=62.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.|||..+. |+.|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ---AQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC---EESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe---eEEEee
Confidence 56899999999999999999999999943333222221 23699999999999999999999999998 788887
Q ss_pred EEcc
Q 020917 123 EMAK 126 (320)
Q Consensus 123 ~~a~ 126 (320)
.|+.
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 6653
No 314
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=115.08 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=64.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
.+.++|||+|||+++|++||+++|+.| .+....|.. + ..+|||||+|.+.++|++|| .+||..|. ||.|.|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~---gr~i~V~ 88 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI---QRYVEVS 88 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET---TEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC---CeEEEEE
Confidence 456899999999999999999999999 544333332 1 24699999999999999999 59999998 8999998
Q ss_pred Ecccc
Q 020917 124 MAKKN 128 (320)
Q Consensus 124 ~a~~~ 128 (320)
.+..+
T Consensus 89 ~a~~~ 93 (109)
T 2dnn_A 89 PATER 93 (109)
T ss_dssp ECCHH
T ss_pred ECCcc
Confidence 88654
No 315
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.3e-15 Score=112.26 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=63.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccE-EEe-e--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i-v~~-~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
...++|||+|||+++|+++|+++|+.|+.+...| +.. . ..+|||||+|.+.++|++|++. +|..|. ||.|+|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~---gr~i~v 88 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG---HRYIEI 88 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS---SSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC---CcEEEE
Confidence 5678999999999999999999999993332212 111 1 2359999999999999999996 999998 799999
Q ss_pred EEcccc
Q 020917 123 EMAKKN 128 (320)
Q Consensus 123 ~~a~~~ 128 (320)
.++..+
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 998644
No 316
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=2e-15 Score=118.39 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=66.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCee--EEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFK--QMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~--~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
..++|||+|||+++|+++|+++|++| .|. +|+|+.+.. +|||||+|.+.++|.+||+ ++|..|.| |.|+|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g---R~I~V 115 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGH---RYIEV 115 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTT---BCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECC---EEEEE
Confidence 46889999999999999999999999 777 899876543 8999999999999999997 58899999 89999
Q ss_pred EeecC
Q 020917 297 QYSKN 301 (320)
Q Consensus 297 ~~ak~ 301 (320)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 317
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=2.6e-15 Score=114.19 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=67.4
Q ss_pred CCCCeEEEeCCC--CCCC--------HHHHHHhhccCCCeeEEEEEecC------CcceEEEEEcCHHHHHHHHHHhCCC
Q 020917 221 PPCNTLFIGNLG--ESIN--------EEELRGLFSAQPGFKQMKVLRQE------RHTVCFIEFEDVNSASSVHHNLQGA 284 (320)
Q Consensus 221 ~~~~~LfV~NL~--~~~t--------ee~L~~~F~~~G~i~~v~i~~~~------~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (320)
.|+++|.|.||- .++. ++||+++|++||.|.+|+|.++. .+|++||+|.+.++|.+|+++|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 368999999993 3333 37999999999999999998653 3799999999999999999999999
Q ss_pred eeCCCCCceeEEEeec
Q 020917 285 VIPSSGSVGMRIQYSK 300 (320)
Q Consensus 285 ~l~g~~~~~l~v~~ak 300 (320)
.|.| |.|+|+|..
T Consensus 83 ~f~G---R~i~v~~~~ 95 (105)
T 3v4m_A 83 KFAN---RVVVTKYCD 95 (105)
T ss_dssp EETT---EECEEEEEC
T ss_pred EeCC---CEEEEEEeC
Confidence 9999 999999974
No 318
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=3.6e-15 Score=121.58 Aligned_cols=82 Identities=11% Similarity=0.065 Sum_probs=68.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||.++|+++|+++|+.|+.+..+.+... + .+|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD---DRIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 356899999999999999999999999944433333222 1 3599999999999999999999999998 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|+|++....
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999976543
No 319
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=4.3e-15 Score=113.00 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=64.5
Q ss_pred CCcceEEEcCCCCCC------CHHHHHHHhhhCCCccccEEEe---e---CCcceEEEEeCCHHHHHHHHHHhcCceeCc
Q 020917 47 DEVRTIFITGLPDDV------KERELQNLLRWLPGYEASQVNY---K---GEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~------tee~L~~lF~~~~~~~~~iv~~---~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~ 114 (320)
...++|||+|||..+ |+++|+++|+.| |.|..+ + .++|||||+|.+.++|.+|++.|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~- 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD- 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG----SCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS-
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC----CCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC-
Confidence 347899999999999 789999999999 555333 1 23699999999999999999999999998
Q ss_pred CCCC-eEEEEEcccc
Q 020917 115 ETKS-VLHTEMAKKN 128 (320)
Q Consensus 115 ~~gr-~l~v~~a~~~ 128 (320)
|+ .|+|.++...
T Consensus 88 --g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 --KQHTFRVNLFTDF 100 (105)
T ss_dssp --TTCEEEEECSCCC
T ss_pred --CCceEEEEEcchH
Confidence 88 9999999653
No 320
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=1.5e-15 Score=111.20 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=62.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccc-------cEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA-------SQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~-------~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
.+.++|||+|||+++|+++|+++|+.|+...| .|..+ ...+|||||+|.+.++|.+|+ .|||..+. |
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~---g 79 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQ---G 79 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEET---T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEEC---C
Confidence 46899999999999999999999999932222 44333 345799999999999999999 89999998 8
Q ss_pred CeEEEEE
Q 020917 118 SVLHTEM 124 (320)
Q Consensus 118 r~l~v~~ 124 (320)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999874
No 321
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=119.19 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=67.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCe----eEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCcee
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGF----KQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i----~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l 294 (320)
...+|||+|||+++|++||+++|++||.| .+|+|+.+.+ +|||||+|.+.++|.+||+. ||..|.+ +.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g---R~i 97 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK---RYI 97 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS---CEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC---eEE
Confidence 36899999999999999999999999975 6888876543 79999999999999999985 9999998 899
Q ss_pred EEEeecC
Q 020917 295 RIQYSKN 301 (320)
Q Consensus 295 ~v~~ak~ 301 (320)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988753
No 322
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.8e-15 Score=113.39 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=64.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeC--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
.+.++|||+|||+++|++||+++|+.|+.+...|+..++ .+|||||+|.+.++|++||+ +|+..|. ||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~---gr~i~V~~ 88 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ---HRYVELFL 88 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS---SSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC---CcEEEEEE
Confidence 557899999999999999999999999643222222232 35999999999999999996 8999998 79999998
Q ss_pred cccc
Q 020917 125 AKKN 128 (320)
Q Consensus 125 a~~~ 128 (320)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8644
No 323
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.7e-15 Score=111.71 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=63.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
...++|||+|||.++|+++|+++|+.|+.+...++...+.+ ||||+|.+.++|.+|++ |||..|. |+.|+|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~---g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLG---GHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEET---TEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEEC---CEEEEEEECC
Confidence 45789999999999999999999999944433211111223 99999999999999999 9999998 8999999886
Q ss_pred ccc
Q 020917 127 KNL 129 (320)
Q Consensus 127 ~~~ 129 (320)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 324
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.59 E-value=1.5e-15 Score=107.99 Aligned_cols=71 Identities=11% Similarity=0.308 Sum_probs=59.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 51 ~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
+|||+|||.++|+++|+++|+.|+.+....+... .++|||||+|.+.++|++|++ |+|..+. |+.|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~---g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN---NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS---SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC---CEEEEEEeC
Confidence 5999999999999999999999944433322221 135999999999999999998 9999998 899999876
No 325
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.58 E-value=1.2e-14 Score=118.69 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=66.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
...++|||+|||+++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 144 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD---GRELRV 144 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS---SSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 45789999999999999999999999943322222221 23699999999999999999999999998 899999
Q ss_pred EEccccc
Q 020917 123 EMAKKNL 129 (320)
Q Consensus 123 ~~a~~~~ 129 (320)
.|++.+.
T Consensus 145 ~~a~~~~ 151 (158)
T 2kn4_A 145 QMARYGR 151 (158)
T ss_dssp EEECCSS
T ss_pred EECCCCC
Confidence 9997654
No 326
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=2.1e-15 Score=127.51 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=71.7
Q ss_pred CCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020917 223 CNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 223 ~~~LfV~NL~~-~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~ 301 (320)
+++|||+|||. ++++++|+++|++||.|.+|+++++. +|||||+|.+.++|.+|++.|||..|.| +.|+|.|++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHG---KPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSS---CCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecC---eEEEEEEecC
Confidence 68999999999 99999999999999999999998654 7999999999999999999999999999 8999999986
Q ss_pred C
Q 020917 302 P 302 (320)
Q Consensus 302 ~ 302 (320)
.
T Consensus 79 ~ 79 (198)
T 1qm9_A 79 Q 79 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 327
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=6.9e-15 Score=124.23 Aligned_cols=80 Identities=11% Similarity=0.257 Sum_probs=69.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
.++|||+|||.++++++|+++|++||.|.+|++.++.+ +|||||+|.+.++|..|+..++ ..|.| +.|+|.|+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~G---r~l~V~~~ 184 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKE---TDLLILFK 184 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETT---EECEEEET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECC---EEEEEEEh
Confidence 58999999999999999999999999999999987543 8999999999999999997665 59999 99999999
Q ss_pred cCCCCCC
Q 020917 300 KNPFGKR 306 (320)
Q Consensus 300 k~~~~~~ 306 (320)
+.-..++
T Consensus 185 ~~y~~~K 191 (193)
T 2voo_A 185 DDYFAKK 191 (193)
T ss_dssp TTC----
T ss_pred HHHHHHh
Confidence 8876654
No 328
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.8e-15 Score=107.08 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=61.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++.++ ..+. |+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~---g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD---SKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS---SCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC---CEEEEEEec
Confidence 57999999999999999999999965544444332 236999999999999999999998 7887 899999987
No 329
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.57 E-value=2.3e-15 Score=108.86 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=57.5
Q ss_pred cceEEEcCCCCCC------CHHHHHHHhhhCCCccccEEEe---e---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCC
Q 020917 49 VRTIFITGLPDDV------KERELQNLLRWLPGYEASQVNY---K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (320)
Q Consensus 49 ~~~L~V~nLp~~~------tee~L~~lF~~~~~~~~~iv~~---~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~ 116 (320)
.++|||+|||..+ |+++|+++|+.| |.|..+ + ..+|||||+|.+.++|.+|++.|||..+.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--- 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD--- 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT----CCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS---
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc----CCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC---
Confidence 3789999999999 789999999999 555333 1 23699999999999999999999999998
Q ss_pred CC-eEEE
Q 020917 117 KS-VLHT 122 (320)
Q Consensus 117 gr-~l~v 122 (320)
|+ .|+|
T Consensus 74 g~~~l~V 80 (81)
T 2krb_A 74 KQHTFRV 80 (81)
T ss_dssp SSSCCCC
T ss_pred CceeEEe
Confidence 78 8876
No 330
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.57 E-value=6.3e-15 Score=126.00 Aligned_cols=78 Identities=13% Similarity=0.291 Sum_probs=70.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+.++|||+|||.++|+++|+++|++||.|.+|+++++. .+|||||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g---~~l~v~ 103 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGG---RNIKVG 103 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC----CCCEEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCC---eeEEEe
Confidence 36899999999999999999999999999999997654 38999999999999999999999999999 899999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
++.+.
T Consensus 104 ~~~~~ 108 (216)
T 2qfj_A 104 RPSNI 108 (216)
T ss_dssp CCSCC
T ss_pred cCCCc
Confidence 98765
No 331
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.57 E-value=2.5e-15 Score=114.67 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=65.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCC---ccccEEEe-e--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPG---YEASQVNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~---~~~~iv~~-~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
.+.++|||+|||+++|+++|+++|+.|+. +....+.. + ..+|||||+|.+.++|++|++ ++|..|. ||.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~---gr~i 84 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG---QRYV 84 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS---SSCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC---CeEE
Confidence 56889999999999999999999999844 23222222 1 246999999999999999999 9999997 8999
Q ss_pred EEEEccccc
Q 020917 121 HTEMAKKNL 129 (320)
Q Consensus 121 ~v~~a~~~~ 129 (320)
+|.++..+.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999997643
No 332
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=8.2e-15 Score=123.34 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
..++|||+|||.++|+++|+++|++||.|.+|+++++.. +|||||+|.+.++|.+||+. +|..|.| +.|+|.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g---~~l~v~ 87 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDG---RVVEPK 87 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETT---EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECC---EEeeee
Confidence 478999999999999999999999999999999987643 78999999999999999975 9999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
++...
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 98766
No 333
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=6.7e-15 Score=121.44 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=71.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC------CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE------RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~------~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
.++|||+|||.++|+++|+++|++||.|.+++++++. .+|||||+|.+.++|.+|++.|||..+.+...+.+++
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 6899999999999999999999999999999998763 4689999999999999999999999887433478999
Q ss_pred EeecCC
Q 020917 297 QYSKNP 302 (320)
Q Consensus 297 ~~ak~~ 302 (320)
.+++..
T Consensus 83 ~~~~~~ 88 (175)
T 3nmr_A 83 KPADSE 88 (175)
T ss_dssp EECGGG
T ss_pred cccccc
Confidence 988765
No 334
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=9.1e-16 Score=113.20 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=62.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
++|||+|||.++++++|+++|+.|+.+....+... ..+|||||+|.+.+ |.+|++.|||..+. |+.|+|.+|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~---g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM---GRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS---SSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC---CeEEEEEEc
Confidence 68999999999999999999999955444333321 23699999999999 99999999999998 899999999
Q ss_pred cccc
Q 020917 126 KKNL 129 (320)
Q Consensus 126 ~~~~ 129 (320)
....
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7653
No 335
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5e-15 Score=114.53 Aligned_cols=75 Identities=13% Similarity=0.252 Sum_probs=67.0
Q ss_pred CeEEEeCC----CCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcC----HHH----HHHHHH--HhCCCe
Q 020917 224 NTLFIGNL----GESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFED----VNS----ASSVHH--NLQGAV 285 (320)
Q Consensus 224 ~~LfV~NL----~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~----~~~----A~~Al~--~lnG~~ 285 (320)
+.|||+|| ++.+++++|+++|+.||.|.+++++.++. +|||||+|.| .++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 99999999999999999999999998765 8999999996 433 888988 899999
Q ss_pred eCCCCCceeEEEeecC
Q 020917 286 IPSSGSVGMRIQYSKN 301 (320)
Q Consensus 286 l~g~~~~~l~v~~ak~ 301 (320)
|.| ++|+|.+-++
T Consensus 83 I~G---r~irV~ln~~ 95 (136)
T 2j8a_A 83 IMG---FKFEVILNKH 95 (136)
T ss_dssp ETT---EEEEEEECCT
T ss_pred ecC---cEEEEEECcc
Confidence 999 9999998765
No 336
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.57 E-value=2.8e-14 Score=118.83 Aligned_cols=82 Identities=12% Similarity=0.192 Sum_probs=68.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
...+.++|||+|||..+|+++|+++|+.|+.+..+.+... ..+|||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~---Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD---GRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS---SSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 3456789999999999999999999999955544333332 24699999999999999999999999998 89999
Q ss_pred EEEccccc
Q 020917 122 TEMAKKNL 129 (320)
Q Consensus 122 v~~a~~~~ 129 (320)
|+|+....
T Consensus 161 V~~a~~~~ 168 (177)
T 2f3j_A 161 IQLVASQI 168 (177)
T ss_dssp EEEESSGG
T ss_pred EEEecCCC
Confidence 99997653
No 337
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.57 E-value=1.3e-14 Score=111.76 Aligned_cols=77 Identities=9% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCCeEEEeCCCCCCC----------HHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCC
Q 020917 222 PCNTLFIGNLGESIN----------EEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (320)
Q Consensus 222 ~~~~LfV~NL~~~~t----------ee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~ 291 (320)
++++|.|.||-..-. ++||+++|++||.|.+|.|.++..+|++||+|.+.++|.+|++.|||+.|.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G--- 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG--- 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT---
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---
Confidence 578999999954322 2688999999999999999876668999999999999999999999999999
Q ss_pred ceeEEEeecC
Q 020917 292 VGMRIQYSKN 301 (320)
Q Consensus 292 ~~l~v~~ak~ 301 (320)
|.|+|+|+..
T Consensus 83 R~i~v~~~~~ 92 (114)
T 3s6e_A 83 KMITAAYVPL 92 (114)
T ss_dssp EECEEEEECH
T ss_pred EEEEEEEEcH
Confidence 9999999743
No 338
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=1.3e-14 Score=113.29 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=65.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
.+.++|||+|| ++|+++|+++|+.|+.+..+.+ ...+|||||+|.+.++|.+|++.|||..+. |+.|+|.|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i--~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~---g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM--DPPRNCAFVTYEKMESADQAVAELNGTQVE---SVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCBCS---SCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE--eCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEEEeC
Confidence 46889999996 6999999999999954433333 356799999999999999999999999997 8999999997
Q ss_pred ccc
Q 020917 127 KNL 129 (320)
Q Consensus 127 ~~~ 129 (320)
.+.
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 339
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=1e-14 Score=120.03 Aligned_cols=81 Identities=19% Similarity=0.186 Sum_probs=66.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++|||+|||..+|+++|+++|+.|+.+..+.+... + .+|||||+|.+.++|.+||+.|||..|. |+.|+|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V 146 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM---GQTIQV 146 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEE
Confidence 45789999999999999999999999944333333321 1 2599999999999999999999999998 899999
Q ss_pred EEcccccc
Q 020917 123 EMAKKNLF 130 (320)
Q Consensus 123 ~~a~~~~~ 130 (320)
.|+..+..
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 99976543
No 340
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5.1e-15 Score=114.29 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=53.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEec-------CCcceEEEEEcCHHHHHHHHHHhC
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ-------ERHTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~-------~~~g~aFV~F~~~~~A~~Al~~ln 282 (320)
..++|||+|||.++++++|+++|++||.|. +.++.+ ..+|||||+|.+.++|.+|++.|+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 468999999999999999999999999999 777543 338999999999999999999993
No 341
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=2.8e-15 Score=117.47 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=61.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCcc--ccEEEe-e--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYE--ASQVNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~--~~iv~~-~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
...++|||+|||+++|+++|+++|+.| .+. ...|.. + ..+|||||+|.+.++|++|++ +++..|. ||.|+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~---gR~I~ 114 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIG---HRYIE 114 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBT---TBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEEC---CEEEE
Confidence 457889999999999999999999999 443 221221 1 246999999999999999998 5788887 89999
Q ss_pred EEEccc
Q 020917 122 TEMAKK 127 (320)
Q Consensus 122 v~~a~~ 127 (320)
|.++..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998854
No 342
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=3.9e-15 Score=129.14 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=64.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCC--CccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLP--GYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~--~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..++|||+||++++|+++|+++|+.|+ .+....|... + +||||||+|.+.++|++||+.|||..|. |+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~---Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---GQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT---TBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC---CEEeE
Confidence 578999999999999999999999995 3332222221 1 3599999999999999999999999998 89999
Q ss_pred EEEccccc
Q 020917 122 TEMAKKNL 129 (320)
Q Consensus 122 v~~a~~~~ 129 (320)
|.|++...
T Consensus 144 V~~a~~~~ 151 (229)
T 3q2s_C 144 VTPVNKQF 151 (229)
T ss_dssp EEECCHHH
T ss_pred EEECCCCc
Confidence 99997654
No 343
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=2e-14 Score=111.41 Aligned_cols=76 Identities=11% Similarity=0.145 Sum_probs=66.9
Q ss_pred CCCeEEEeCCCC-----CCCHHHHHHhhccCCCeeEEEEEecCC--------cceEEEEEcCHHHHHHHHHHhCCCeeCC
Q 020917 222 PCNTLFIGNLGE-----SINEEELRGLFSAQPGFKQMKVLRQER--------HTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (320)
Q Consensus 222 ~~~~LfV~NL~~-----~~tee~L~~~F~~~G~i~~v~i~~~~~--------~g~aFV~F~~~~~A~~Al~~lnG~~l~g 288 (320)
++++|+|+||-. +--++||+++|++||.|.+|+|.++.. +|++||+|.+.++|.+|++.|||+.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999952 123689999999999999999987532 5899999999999999999999999999
Q ss_pred CCCceeEEEeec
Q 020917 289 SGSVGMRIQYSK 300 (320)
Q Consensus 289 ~~~~~l~v~~ak 300 (320)
|.|+|+|..
T Consensus 99 ---R~i~v~~~~ 107 (118)
T 3ue2_A 99 ---RKVVAEVYD 107 (118)
T ss_dssp ---EECEEEEEC
T ss_pred ---cEEEEEEcC
Confidence 999999974
No 344
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=1.8e-15 Score=120.79 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=62.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
....++|||+|||+++||+||+++|+.|+.....|+..+ ..+|||||+|.+.++|++|| .+|+..|. ||.|+|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~---gR~i~V~ 118 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ---HRYIELF 118 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS---SCCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC---CEEEEEE
Confidence 456789999999999999999999999962211111112 24699999999999999999 69999998 7999999
Q ss_pred Ecccc
Q 020917 124 MAKKN 128 (320)
Q Consensus 124 ~a~~~ 128 (320)
++...
T Consensus 119 ~a~~~ 123 (139)
T 2hgn_A 119 LNSTT 123 (139)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 88654
No 345
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=1.1e-14 Score=112.61 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=59.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCc-ceEEEEeCCHHHHHHHHHHhcCceeCcCCCCe-----E
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEK-PMGFALFSTAQLAVAAKDALQEMIFDAETKSV-----L 120 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~k-g~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~-----l 120 (320)
...++|||+|||+++|+++|+++|+.| |.|+.+.-.+ |||||+|.+.++|++||+.|||..|. |+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR---SHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGG----SCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCC---CTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEEC---CcEeeeEEE
Confidence 346899999999999999999999999 6665543222 99999999999999999999999998 788 5
Q ss_pred EEEEccc
Q 020917 121 HTEMAKK 127 (320)
Q Consensus 121 ~v~~a~~ 127 (320)
+|..+..
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 5555543
No 346
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.1e-13 Score=103.97 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=64.9
Q ss_pred CCeEEEeCCC-------CCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 223 CNTLFIGNLG-------ESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 223 ~~~LfV~NL~-------~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..+|-|.-.. .++++++|+++|++||.|.+|+|++ ..+|||||+|.+.++|..|++.++| +.+ ++|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g---~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVD---NPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSS---SBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCC---CeEE
Confidence 4577777544 4589999999999999999999984 5689999999999999999998766 567 8999
Q ss_pred EEeecCCCC
Q 020917 296 IQYSKNPFG 304 (320)
Q Consensus 296 v~~ak~~~~ 304 (320)
|+|++.+-.
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999988743
No 347
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=2.4e-14 Score=126.56 Aligned_cols=76 Identities=26% Similarity=0.431 Sum_probs=71.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
...++|||+|||.++|+++|+++|++||.|.+|++.+ ++|||||+|.+.++|..|+..|||..|.| +.|+|.|+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g---~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKS---RPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETT---EECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECC---ceeEeeecc
Confidence 3468999999999999999999999999999999974 57999999999999999999999999999 999999987
Q ss_pred C
Q 020917 301 N 301 (320)
Q Consensus 301 ~ 301 (320)
.
T Consensus 95 ~ 95 (261)
T 3sde_A 95 H 95 (261)
T ss_dssp C
T ss_pred c
Confidence 5
No 348
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=6.4e-16 Score=119.69 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=68.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccc--------cEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA--------SQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~--------~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~ 114 (320)
.+.++|||+|||.++|+++|+++|+.|+.+.. ..+... ..+|||||+|.+.++|.+|++.|||..|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 83 (116)
Confidence 46789999999999999999999999955543 111111 23699999999999999999999999998
Q ss_pred CCCCeEEEEEccccccc
Q 020917 115 ETKSVLHTEMAKKNLFV 131 (320)
Q Consensus 115 ~~gr~l~v~~a~~~~~~ 131 (320)
|+.|+|.|++.+...
T Consensus 84 --g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 --GNPIKVSFATRRADF 98 (116)
Confidence 899999999876543
No 349
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=5.2e-14 Score=103.66 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=57.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..+..+|||+|||+++||++|+++|+.| |.|..+ +.+||||||+|.+.++|++ |+|..+. ..|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~----G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~-~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQY----GEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLI-IKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEE-ETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcc-cCCEEEEE
Confidence 3567899999999999999999999999 666444 2367999999999999983 5666652 12799999
Q ss_pred EEccccc
Q 020917 123 EMAKKNL 129 (320)
Q Consensus 123 ~~a~~~~ 129 (320)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9997653
No 350
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=8.9e-15 Score=103.94 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=58.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 51 ~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
+|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|++|++ ++|..+. |+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~---g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVG---LSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBT---TBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeEC---CEEEEEEEC
Confidence 6999999999999999999999944433322221 236999999999999999999 5888887 899999875
No 351
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=112.35 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=63.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCcc----ccEEEe-eC--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCe
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYE----ASQVNY-KG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~----~~iv~~-~~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~ 119 (320)
.+.++|||+|||+++|++||+++|+.|+.+. ...|.. .+ .+|||||+|.+.++|++||+. |+..|. ||.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~---gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG---KRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS---SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC---CeE
Confidence 5678999999999999999999999996542 222222 22 359999999999999999995 998887 799
Q ss_pred EEEEEcccc
Q 020917 120 LHTEMAKKN 128 (320)
Q Consensus 120 l~v~~a~~~ 128 (320)
|+|..+..+
T Consensus 97 i~V~~a~~~ 105 (123)
T 2dha_A 97 IELFRSTAA 105 (123)
T ss_dssp ECCEEECHH
T ss_pred EEEEECCHH
Confidence 999988644
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.5e-14 Score=106.23 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=59.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCcee--CcCCCCeEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIF--DAETKSVLH 121 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~--~~~~gr~l~ 121 (320)
.+.++|||+|||.++|+++|+++|+.| |.|..+ +..+|||||+|.+.++|++| ++..+ . |+.|+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~---g~~l~ 71 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQY----GDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIK---GISVH 71 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTT----SCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEET---TEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeC---CEEEE
Confidence 467999999999999999999999999 555332 33579999999999999754 44444 4 79999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|.+++.+..
T Consensus 72 v~~a~~~~~ 80 (88)
T 1wf0_A 72 ISNAEPKHN 80 (88)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999976644
No 353
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.8e-14 Score=123.60 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=65.9
Q ss_pred CCCcceEEEcCCCCCC---------CHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCcee--
Q 020917 46 HDEVRTIFITGLPDDV---------KERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIF-- 112 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~---------tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~-- 112 (320)
...+++|||+||+..+ +|++|+++|+.| |.|..+ -.+||||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f----G~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL----GDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT----SCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc----CCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 3568999999999998 799999999999 666443 34579999999999999999999999999
Q ss_pred ----------CcCCCCeEEEEEcccccc
Q 020917 113 ----------DAETKSVLHTEMAKKNLF 130 (320)
Q Consensus 113 ----------~~~~gr~l~v~~a~~~~~ 130 (320)
. |+.|.|.||+...+
T Consensus 207 ~~~~e~~~~~~---gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 207 PSDKEWDDRRE---GTGLLVKWANEDPD 231 (240)
T ss_dssp TTSTTGGGGGG---SCCCEEEECC----
T ss_pred cccccccccCC---CCEEEEEEccCCCC
Confidence 4 89999999986544
No 354
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.51 E-value=3.5e-14 Score=129.40 Aligned_cols=79 Identities=11% Similarity=0.280 Sum_probs=67.8
Q ss_pred CCCCCeEEEeC--CCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCC-CC-ceeE
Q 020917 220 NPPCNTLFIGN--LGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS-GS-VGMR 295 (320)
Q Consensus 220 ~~~~~~LfV~N--L~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~-~~-~~l~ 295 (320)
..|+++|||+| |+..+||++|+++|++||.|.+|.+. .+||||||+|.+.++|.+|+++|||.++.+. |+ ..|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~--~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP--PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC--TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 44689999999 57899999999999999999999885 3689999999999999999999999999421 11 2689
Q ss_pred EEeec
Q 020917 296 IQYSK 300 (320)
Q Consensus 296 v~~ak 300 (320)
|.|.+
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 99985
No 355
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=8.4e-14 Score=114.62 Aligned_cols=75 Identities=20% Similarity=0.442 Sum_probs=68.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccC----C-------CeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCC
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQ----P-------GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~----G-------~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~ 290 (320)
+.++|||+|||.++|+++|+++|++| | .|.++++. .++|||||+|.+.++|.+|+ .|||..|.|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~--~~~g~afV~f~~~~~A~~A~-~~~~~~~~g-- 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQG-- 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE--TTTTEEEEEESSHHHHHHHG-GGTTCEETT--
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec--CCCCEEEEEeCCHHHHHHHH-HhCCcEecC--
Confidence 36899999999999999999999999 6 77888775 45899999999999999999 899999999
Q ss_pred CceeEEEeecCC
Q 020917 291 SVGMRIQYSKNP 302 (320)
Q Consensus 291 ~~~l~v~~ak~~ 302 (320)
+.|+|.+++..
T Consensus 78 -~~i~v~~~~~~ 88 (172)
T 2g4b_A 78 -QSLKIRRPHDY 88 (172)
T ss_dssp -EECEEECCSSC
T ss_pred -ceeeecCCccc
Confidence 99999998765
No 356
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.49 E-value=4.7e-14 Score=115.57 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=67.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
++++|||+|||.++|+++|+++|++||.|.+|+++++. .+|||||+|.+.++|..|++. +..|.| +.|+|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g---~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDG---KVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETT---EECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCC---eEcccc
Confidence 36899999999999999999999999999999998753 279999999999999999984 678888 899998
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
++..+
T Consensus 77 ~~~~~ 81 (167)
T 2cjk_A 77 RAIPR 81 (167)
T ss_dssp ECCCH
T ss_pred cccch
Confidence 87653
No 357
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.49 E-value=1.8e-14 Score=108.79 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=64.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee-C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~-~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
.+.++|||+|||.++|+++|+++|+.|+.+....+... + .+|||||+|.+.++|++|++ +|..+. |+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~---g~~l~v~ 81 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH---GKKLKLG 81 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET---TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC---CEEEEEE
Confidence 45789999999999999999999999944433323221 1 35999999999999999998 999998 8999999
Q ss_pred Eccccc
Q 020917 124 MAKKNL 129 (320)
Q Consensus 124 ~a~~~~ 129 (320)
++..+.
T Consensus 82 ~a~~~~ 87 (102)
T 2xs2_A 82 PAIRKQ 87 (102)
T ss_dssp EEEECC
T ss_pred ECCcCc
Confidence 997553
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.2e-13 Score=104.69 Aligned_cols=81 Identities=9% Similarity=0.010 Sum_probs=66.6
Q ss_pred CCcceEEEcCCCCCCC-----------HHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcC
Q 020917 47 DEVRTIFITGLPDDVK-----------ERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAE 115 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~t-----------ee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~ 115 (320)
.++++|+|.||..... +++|+++|+.|+.+...+|..+..+|||||+|.+.++|.+|++.|||..|.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG-- 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET--
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence 5689999999954432 689999999996665554432346799999999999999999999999998
Q ss_pred CCCeEEEEEcccccc
Q 020917 116 TKSVLHTEMAKKNLF 130 (320)
Q Consensus 116 ~gr~l~v~~a~~~~~ 130 (320)
|+.|+|.|+..+..
T Consensus 91 -gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 -GRQITAQAWDGTTD 104 (112)
T ss_dssp -TEECEEEECCSCCC
T ss_pred -CcEEEEEEeCCCCC
Confidence 89999999976543
No 359
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.48 E-value=7.7e-14 Score=117.52 Aligned_cols=75 Identities=20% Similarity=0.429 Sum_probs=67.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccC----C-------CeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCC
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQ----P-------GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~----G-------~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~ 290 (320)
..++|||+|||.++++++|+++|++| | .|.++++. ..+|||||+|.+.++|.+|+ .|||..|.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~Al-~l~g~~~~g-- 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQG-- 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE--TTTTEEEEEESCSHHHHHHG-GGTTEEETT--
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec--CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC--
Confidence 36899999999999999999999999 5 67777774 45899999999999999999 899999999
Q ss_pred CceeEEEeecCC
Q 020917 291 SVGMRIQYSKNP 302 (320)
Q Consensus 291 ~~~l~v~~ak~~ 302 (320)
+.|+|.|++..
T Consensus 78 -~~i~v~~~~~~ 88 (198)
T 2yh0_A 78 -QSLKIRRPHDY 88 (198)
T ss_dssp -EEEEEECCCCC
T ss_pred -ceEEEeCCCCC
Confidence 99999998765
No 360
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=1e-13 Score=114.67 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=66.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
...++|||+|||..+|+++|+++|+.| +.|..+. ..+|||||+|.+.++|.+|++.|||..+. |+.|+|.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~v~ 169 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDA----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSVSLY 169 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTC----SEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET---TEEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEE
Confidence 457899999999999999999999999 6664442 24699999999999999999999999998 8999999
Q ss_pred Ecccc
Q 020917 124 MAKKN 128 (320)
Q Consensus 124 ~a~~~ 128 (320)
|++++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99764
No 361
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5.7e-14 Score=108.35 Aligned_cols=74 Identities=24% Similarity=0.276 Sum_probs=58.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e------CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCe
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~ 119 (320)
...++|||+|||+++|+++|+++|+.|+.+. .++.. + ..+|||||+|.+.++|++|++.|++ ++ |+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~---G~~ 79 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--ED---GKL 79 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ET---TEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cC---CcE
Confidence 4578999999999999999999999996665 22221 1 2369999999999999999998843 55 677
Q ss_pred EEEEEcc
Q 020917 120 LHTEMAK 126 (320)
Q Consensus 120 l~v~~a~ 126 (320)
|.+..+.
T Consensus 80 ~~~~~~~ 86 (114)
T 2dnl_A 80 YLCVSSP 86 (114)
T ss_dssp EEEECCS
T ss_pred EEeccCC
Confidence 7776543
No 362
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.46 E-value=1.5e-13 Score=129.90 Aligned_cols=81 Identities=12% Similarity=0.173 Sum_probs=67.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..+.++|||+|||+.+|+++|+++|+.|+.+..+.|... ..+|||||+|.+.++|.+||+.|||..|. |+.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~---gr~i~ 175 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID---GRRVL 175 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC---CEEEE
Confidence 355689999999999999999999999944433333221 13699999999999999999999999998 89999
Q ss_pred EEEccccc
Q 020917 122 TEMAKKNL 129 (320)
Q Consensus 122 v~~a~~~~ 129 (320)
|.|+....
T Consensus 176 V~~a~~~~ 183 (437)
T 3pgw_S 176 VDVERGRT 183 (437)
T ss_pred EEEeCCCC
Confidence 99998654
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=2e-14 Score=109.07 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=58.0
Q ss_pred EeCCCCCCCHHHHHHhh------------ccCCCeeEEEEEecC---CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCc
Q 020917 228 IGNLGESINEEELRGLF------------SAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292 (320)
Q Consensus 228 V~NL~~~~tee~L~~~F------------~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~ 292 (320)
+.||+.++++++|++.| ++||.|.+|+|.++. .+|||||+|.+.++|.+|++.|||+.|.| |
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G---r 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG---Q 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT---E
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC---E
Confidence 34555556666666555 999999999998754 28999999999999999999999999999 9
Q ss_pred eeEEEee
Q 020917 293 GMRIQYS 299 (320)
Q Consensus 293 ~l~v~~a 299 (320)
.|+|+|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999996
No 364
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.43 E-value=5.3e-13 Score=101.28 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=65.2
Q ss_pred CCcceEEEcCCCC-----CCCHHHHHHHhhhCCCccccEEEee-----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCC
Q 020917 47 DEVRTIFITGLPD-----DVKERELQNLLRWLPGYEASQVNYK-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (320)
Q Consensus 47 ~~~~~L~V~nLp~-----~~tee~L~~lF~~~~~~~~~iv~~~-----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~ 116 (320)
.++++|+|+||.. +-++++|++.|++|+.+....|... .++|||||+|.+.++|.+|++.|||..|.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~--- 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG--- 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC---
Confidence 5689999999973 3478999999999954444333321 23699999999999999999999999998
Q ss_pred CCeEEEEEcccccc
Q 020917 117 KSVLHTEMAKKNLF 130 (320)
Q Consensus 117 gr~l~v~~a~~~~~ 130 (320)
||.|+|.|+.....
T Consensus 83 Gr~i~v~~a~~~~f 96 (105)
T 2pe8_A 83 GRVVKACFYNLDKF 96 (105)
T ss_dssp TEECEEEECCHHHH
T ss_pred CcEEEEEEcCHHHh
Confidence 89999999976443
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=5e-13 Score=121.80 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=65.5
Q ss_pred CCCCcceEEEcC--CCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC--
Q 020917 45 AHDEVRTIFITG--LPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS-- 118 (320)
Q Consensus 45 ~~~~~~~L~V~n--Lp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr-- 118 (320)
...++++|||+| |++.+||++|+++|++| |.|..+ ..+||||||+|.+.++|++|++.|||..+....|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~----G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTT----SCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhc----CCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 457899999999 57899999999999999 555333 34789999999999999999999999999544466
Q ss_pred eEEEEEcc
Q 020917 119 VLHTEMAK 126 (320)
Q Consensus 119 ~l~v~~a~ 126 (320)
.|.|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 67888884
No 366
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.36 E-value=1.5e-12 Score=109.89 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=61.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
..++|||+|||.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.+ +..+. |+.|+|.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~---Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYK---ETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEET---TEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeEC---CEEEEEEE
Confidence 3689999999999999999999999943332222221 23699999999999999999855 55887 89999999
Q ss_pred cccc
Q 020917 125 AKKN 128 (320)
Q Consensus 125 a~~~ 128 (320)
++.-
T Consensus 184 ~~~y 187 (193)
T 2voo_A 184 KDDY 187 (193)
T ss_dssp TTTC
T ss_pred hHHH
Confidence 8654
No 367
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.7e-12 Score=100.31 Aligned_cols=77 Identities=6% Similarity=0.019 Sum_probs=62.1
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCC----HHH----HHHHHH--HhcCce
Q 020917 50 RTIFITGL----PDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFST----AQL----AVAAKD--ALQEMI 111 (320)
Q Consensus 50 ~~L~V~nL----p~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~----~e~----A~~A~~--~lng~~ 111 (320)
..|||+|| |+.+++++|+++|+.|+.+..+.+.+. .++|||||+|.| +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999965555555542 136999999996 444 888988 789999
Q ss_pred eCcCCCCeEEEEEccccc
Q 020917 112 FDAETKSVLHTEMAKKNL 129 (320)
Q Consensus 112 ~~~~~gr~l~v~~a~~~~ 129 (320)
|+ |+.|+|++-....
T Consensus 83 I~---Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IM---GFKFEVILNKHSI 97 (136)
T ss_dssp ET---TEEEEEEECCTTH
T ss_pred ec---CcEEEEEECcccH
Confidence 99 8999999876543
No 368
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=89.50 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=63.0
Q ss_pred CCCCCeEEEeCCC----CCC-CH---HHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCC
Q 020917 220 NPPCNTLFIGNLG----ESI-NE---EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (320)
Q Consensus 220 ~~~~~~LfV~NL~----~~~-te---e~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~ 291 (320)
+||..||+|.-.+ .+. ++ .+|.+.|++||.|..++++.+ .+||+|.+.++|.+|++ |||..+.|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~G--- 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLN--- 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETT---
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCC---
Confidence 4567788888765 222 32 688999999999999999863 38999999999999998 99999999
Q ss_pred ceeEEEeecCC
Q 020917 292 VGMRIQYSKNP 302 (320)
Q Consensus 292 ~~l~v~~ak~~ 302 (320)
|.|+|++++.-
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998764
No 369
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=3.2e-11 Score=92.96 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=66.7
Q ss_pred CCCCCCeEEEeCCCCC-CCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcC-HHHHHHHHHHhC--CCeeCCCCCcee
Q 020917 219 DNPPCNTLFIGNLGES-INEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFED-VNSASSVHHNLQ--GAVIPSSGSVGM 294 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~-~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~-~~~A~~Al~~ln--G~~l~g~~~~~l 294 (320)
..++++.|||+||+.+ +++++|+++|++||.|.+|.+.++ ...|||+|.+ .++|..|+..|| |..|.| ..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g--~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g---~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG--AKEGIILFKEKAKEALGKAKDANNGNLQLRN---KEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT--CSEEEEEESSCHHHHHHHHHHTTTSCBCTTS---SSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCChHHHHHHHHHhhcCCcEEeC---cEE
Confidence 3446899999999999 999999999999999999999754 3579999999 899999999994 888888 788
Q ss_pred EEEee
Q 020917 295 RIQYS 299 (320)
Q Consensus 295 ~v~~a 299 (320)
+++..
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 87653
No 370
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.26 E-value=2.2e-11 Score=92.35 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=62.2
Q ss_pred CCcceEEEcCC--CCCCC--------HHHHHHHhhhCCCccccEEEee----------CCcceEEEEeCCHHHHHHHHHH
Q 020917 47 DEVRTIFITGL--PDDVK--------ERELQNLLRWLPGYEASQVNYK----------GEKPMGFALFSTAQLAVAAKDA 106 (320)
Q Consensus 47 ~~~~~L~V~nL--p~~~t--------ee~L~~lF~~~~~~~~~iv~~~----------~~kg~aFV~F~~~e~A~~A~~~ 106 (320)
.+++.|.|.|+ +.++. ++||++.|++| |.|..+. .++|+|||+|.+.++|.+|++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~----G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ 78 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY----GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG 78 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT----SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc----CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHH
Confidence 46899999998 33443 47899999999 6554431 1369999999999999999999
Q ss_pred hcCceeCcCCCCeEEEEEccccc
Q 020917 107 LQEMIFDAETKSVLHTEMAKKNL 129 (320)
Q Consensus 107 lng~~~~~~~gr~l~v~~a~~~~ 129 (320)
|||..+. ||.|+|.|+....
T Consensus 79 lnG~~f~---GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 79 LTGRKFA---NRVVVTKYCDPDS 98 (105)
T ss_dssp HTTCEET---TEECEEEEECHHH
T ss_pred hCCCEeC---CCEEEEEEeCHHH
Confidence 9999998 8999999986543
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=3.2e-11 Score=92.66 Aligned_cols=81 Identities=10% Similarity=0.071 Sum_probs=63.9
Q ss_pred CCcceEEEcCCCCCCC----------HHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCC
Q 020917 47 DEVRTIFITGLPDDVK----------ERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~t----------ee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~ 116 (320)
-+++.|.+.|+-.... ++||++.|++|+.+....|.....+|+|||+|.+.++|.+|++.|||..|.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~--- 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA--- 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET---
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 4588999999864332 457899999995554433332335799999999999999999999999998
Q ss_pred CCeEEEEEcccccc
Q 020917 117 KSVLHTEMAKKNLF 130 (320)
Q Consensus 117 gr~l~v~~a~~~~~ 130 (320)
||.|+|.|+.....
T Consensus 82 GR~i~v~~~~~~~y 95 (114)
T 3s6e_A 82 GKMITAAYVPLPTY 95 (114)
T ss_dssp TEECEEEEECHHHH
T ss_pred CEEEEEEEEcHHHH
Confidence 89999999976544
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.1e-11 Score=88.89 Aligned_cols=72 Identities=13% Similarity=0.026 Sum_probs=57.2
Q ss_pred cceEEEcCCC-------CCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 49 VRTIFITGLP-------DDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 49 ~~~L~V~nLp-------~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
.++|-|.-.. ..+|+++|+++|+.| |.|..+ +..+|||||+|.+.++|++|++.+++ +. |+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~----G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~---g~ 80 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKY----GEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LV---DN 80 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTT----SCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CS---SS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhc----CCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CC---CC
Confidence 5567776655 568999999999999 555332 34679999999999999999997655 44 79
Q ss_pred eEEEEEccccc
Q 020917 119 VLHTEMAKKNL 129 (320)
Q Consensus 119 ~l~v~~a~~~~ 129 (320)
+|+|.|++.+.
T Consensus 81 ~l~V~~a~~~~ 91 (100)
T 2d9o_A 81 PLKISWLEGQP 91 (100)
T ss_dssp BCEEECSSCCC
T ss_pred eEEEEEccCCC
Confidence 99999997654
No 373
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.19 E-value=4.2e-11 Score=92.62 Aligned_cols=78 Identities=19% Similarity=0.120 Sum_probs=62.0
Q ss_pred CcceEEEcCCCCC-----CCHHHHHHHhhhCCCccccEEEe-e-C------CcceEEEEeCCHHHHHHHHHHhcCceeCc
Q 020917 48 EVRTIFITGLPDD-----VKERELQNLLRWLPGYEASQVNY-K-G------EKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (320)
Q Consensus 48 ~~~~L~V~nLp~~-----~tee~L~~lF~~~~~~~~~iv~~-~-~------~kg~aFV~F~~~e~A~~A~~~lng~~~~~ 114 (320)
++++|+|.|+-.. -.++||++.|++|+.+....|.. + + ++|++||+|.+.++|.+|++.|||..|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 6899999999522 24789999999994444333332 1 1 2499999999999999999999999998
Q ss_pred CCCCeEEEEEcccc
Q 020917 115 ETKSVLHTEMAKKN 128 (320)
Q Consensus 115 ~~gr~l~v~~a~~~ 128 (320)
||.|+|.|+...
T Consensus 98 --GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 --GRKVVAEVYDQE 109 (118)
T ss_dssp --TEECEEEEECHH
T ss_pred --CcEEEEEEcChH
Confidence 899999998654
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.17 E-value=7.8e-12 Score=94.64 Aligned_cols=69 Identities=20% Similarity=0.166 Sum_probs=53.5
Q ss_pred EcCCCCCCCHHHHHHHh------------hhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 54 ITGLPDDVKERELQNLL------------RWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 54 V~nLp~~~tee~L~~lF------------~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
+.||+..+++++|++.| ++|+.+....|... .++|||||+|.+.++|.+|++.|||..+. ||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~---Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN---GQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET---TE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC---CE
Confidence 56777778888887766 99933333222221 23699999999999999999999999998 89
Q ss_pred eEEEEEc
Q 020917 119 VLHTEMA 125 (320)
Q Consensus 119 ~l~v~~a 125 (320)
.|+|.|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.1e-10 Score=85.05 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=62.7
Q ss_pred CCCCCCeEEEeCCCCC------CCH---HHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCC
Q 020917 219 DNPPCNTLFIGNLGES------INE---EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~------~te---e~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~ 289 (320)
-+||..||+|.-++.. .++ .+|.+.|++||.|..++++.+. +||+|.+.++|.+||+ |||..+.|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~G- 84 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKG- 84 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETT-
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCC-
Confidence 3456789999988643 232 5788999999999999998643 9999999999999998 99999999
Q ss_pred CCceeEEEeec
Q 020917 290 GSVGMRIQYSK 300 (320)
Q Consensus 290 ~~~~l~v~~ak 300 (320)
|.|+|++..
T Consensus 85 --r~L~V~~k~ 93 (95)
T 1ufw_A 85 --RAVKISGPS 93 (95)
T ss_dssp --EEEEEECCC
T ss_pred --eEEEEeccC
Confidence 999999854
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.02 E-value=1.2e-09 Score=93.82 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=63.2
Q ss_pred CCeEEEeCCC-----CCCCHHHHHHhhccCCCeeEEEEEec--------CCcceEEEEEcCHHHHHHHHHHhCCCeeCCC
Q 020917 223 CNTLFIGNLG-----ESINEEELRGLFSAQPGFKQMKVLRQ--------ERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (320)
Q Consensus 223 ~~~LfV~NL~-----~~~tee~L~~~F~~~G~i~~v~i~~~--------~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~ 289 (320)
...+.+.|+- .+-.+++|++.|++||.|.+++|.++ ..+|++||+|.+.++|.+|++.|||+.|.|
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g- 202 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG- 202 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS-
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC-
Confidence 4556666663 23456899999999999999999754 237999999999999999999999999999
Q ss_pred CCceeEEEeec
Q 020917 290 GSVGMRIQYSK 300 (320)
Q Consensus 290 ~~~~l~v~~ak 300 (320)
|.|+++|..
T Consensus 203 --r~i~~~~~~ 211 (222)
T 3dxb_A 203 --RKVVAEVYD 211 (222)
T ss_dssp --SBCEEEECC
T ss_pred --eEEEEEEcC
Confidence 999999974
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2.7e-09 Score=82.20 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=61.1
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCC-HHHHHHHHHHhc--CceeCcCCCCeE
Q 020917 47 DEVRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFST-AQLAVAAKDALQ--EMIFDAETKSVL 120 (320)
Q Consensus 47 ~~~~~L~V~nLp~~-~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~-~e~A~~A~~~ln--g~~~~~~~gr~l 120 (320)
..+..|||+||+.. +++++|+++|+.| |.|.-+ ......|||.|.+ .++|..|+..|| |..|. |..+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~----G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~---g~~~ 88 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNH----GEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLR---NKEV 88 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSS----CCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTT---SSSE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhc----CCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEe---CcEE
Confidence 35889999999999 9999999999999 777444 3445689999999 899999999995 66676 6888
Q ss_pred EEEEccc
Q 020917 121 HTEMAKK 127 (320)
Q Consensus 121 ~v~~a~~ 127 (320)
+++...-
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 8876643
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=4.1e-09 Score=76.29 Aligned_cols=73 Identities=8% Similarity=0.047 Sum_probs=58.5
Q ss_pred CCcceEEEcCCCC----CCCH----HHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 47 DEVRTIFITGLPD----DVKE----RELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 47 ~~~~~L~V~nLp~----~~te----e~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
++..||+|.-++. +.-. .+|.+.|+.| |.|+.++--.+.+||+|.+.++|.+|++ |||..+. ||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~---Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF----GEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELL---NR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT----CCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEET---TE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC----CCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeC---Ce
Confidence 4577899988872 3334 5688888888 7776664333559999999999999999 9999998 89
Q ss_pred eEEEEEccc
Q 020917 119 VLHTEMAKK 127 (320)
Q Consensus 119 ~l~v~~a~~ 127 (320)
.|+|+++++
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999864
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=2.5e-08 Score=73.95 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=65.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccC-----CCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQ-----PGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~-----G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.++|-|-|||+.+++..|+.+...| |.|..|.++. +.+-|+|+|.|...|.+|.-+|+|.+|.| ++|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~g---r~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQG---KVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETT---EEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecC---eEEEec
Confidence 4789999999999999999999999 9999999984 45679999999999999999999999999 999986
Q ss_pred e
Q 020917 298 Y 298 (320)
Q Consensus 298 ~ 298 (320)
=
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 3
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=6e-08 Score=70.53 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=54.1
Q ss_pred CCcceEEEcCCCCC-----CCH----HHHHHHhhhCCCccccE--EEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcC
Q 020917 47 DEVRTIFITGLPDD-----VKE----RELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAE 115 (320)
Q Consensus 47 ~~~~~L~V~nLp~~-----~te----e~L~~lF~~~~~~~~~i--v~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~ 115 (320)
++..||+|.-++.. +-. .+|.+.|+.| |.+ +++-.. -+||+|.+.++|.+|++ |||..+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vilvr~v~d--~~fVtF~d~~sAl~AI~-ldG~~v~-- 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY----GTIVLVRINQG--QMLVTFADSHSALSVLD-VDGMKVK-- 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH----SCCSEEEEETT--EEEEECSCSHHHHHHHH-GGGSEET--
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC----CCEEEEEEecC--cEEEEEcChHHHHHHHh-cCCeeeC--
Confidence 56789999998743 222 4578888888 544 333333 39999999999999999 9999998
Q ss_pred CCCeEEEEEc
Q 020917 116 TKSVLHTEMA 125 (320)
Q Consensus 116 ~gr~l~v~~a 125 (320)
||.|+|.+-
T Consensus 84 -Gr~L~V~~k 92 (95)
T 1ufw_A 84 -GRAVKISGP 92 (95)
T ss_dssp -TEEEEEECC
T ss_pred -CeEEEEecc
Confidence 899999864
No 381
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=1.2e-06 Score=64.77 Aligned_cols=87 Identities=14% Similarity=0.224 Sum_probs=69.6
Q ss_pred CCeEEEeCCCCCC-CH----HHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 223 CNTLFIGNLGESI-NE----EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 223 ~~~LfV~NL~~~~-te----e~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.++|+|.||+.++ .. +.++++|..|+.+..+...+.-.| ..|.|.+.++|.+|...|||..|.| +.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRR--irv~F~~~~~A~~AR~~Lh~~~f~g---~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKR--VRINFSNPLSAADARLRLHKTEFLG---KEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTE--EEEECSSTTHHHHHHHTSTTSEETT---EECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceE--EEEEeCChHHHHHHHHHhccceecC---ceeEEE
Confidence 3689999998754 22 577899999999999988865444 7999999999999999999999999 899999
Q ss_pred eecCCCCCCCCCCCCCCCCC
Q 020917 298 YSKNPFGKRKDGTNGVPPAL 317 (320)
Q Consensus 298 ~ak~~~~~~~~~~~~~~~~~ 317 (320)
|+.... .+..-.+|+.+
T Consensus 80 Fgq~~~---~~~~~L~pP~p 96 (104)
T 1wey_A 80 FAQTLH---IGSSHLAPPNP 96 (104)
T ss_dssp CCCCSS---CCSCCSCCCCC
T ss_pred ecCCCC---CcccccCCCCc
Confidence 998442 23345555544
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.36 E-value=4.8e-07 Score=77.41 Aligned_cols=67 Identities=19% Similarity=0.050 Sum_probs=52.3
Q ss_pred CCCHHHHHHHhhhCCCccccEEEe-e-------CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEccccc
Q 020917 60 DVKERELQNLLRWLPGYEASQVNY-K-------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNL 129 (320)
Q Consensus 60 ~~tee~L~~lF~~~~~~~~~iv~~-~-------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~~~ 129 (320)
.-.+++|++.|++|+.+....|.. . .++|++||+|.+.++|.+|++.|||..+. ||.|++.|.....
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~---gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA---GRKVVAEVYDQER 214 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS---SSBCEEEECCHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC---CeEEEEEEcCHHH
Confidence 345678999999994433332321 1 23599999999999999999999999998 8999999986544
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=6.4e-06 Score=61.10 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=64.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhC-CCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWL-PGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~-~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
+..++|=+-|||..+++..|+.+++++ ...++.+.++ ....+=|+|+|.|...|-+|.-+|+|..|. ||.|+|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~---gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQ---GKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEET---TEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeec---CeEEEec
Confidence 347899999999999999999999999 4455555443 566678999999999999999889999998 8999986
Q ss_pred Ec
Q 020917 124 MA 125 (320)
Q Consensus 124 ~a 125 (320)
=.
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.84 E-value=0.00019 Score=52.02 Aligned_cols=77 Identities=12% Similarity=0.284 Sum_probs=62.3
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC------cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCc--eeE
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV--GMR 295 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~------~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~--~l~ 295 (320)
+.|.|++||+.+||+++.+.++....+....++.... -.-|+|.|.+.++...-.+.++|+.|-++.+. +-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4689999999999999999999999988888875332 24799999999999999999999999764222 235
Q ss_pred EEeec
Q 020917 296 IQYSK 300 (320)
Q Consensus 296 v~~ak 300 (320)
|+||-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=2.6e-05 Score=57.62 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=56.3
Q ss_pred cceEEEcCCCCCC-CH----HHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 49 VRTIFITGLPDDV-KE----RELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 49 ~~~L~V~nLp~~~-te----e~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
..+|+|.||+.++ +. +.++++|..| ..++.+. .- .-..|.|.+.++|.+|...|++..+. |+.|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~----~~~~tF~~lkSF-RRirv~F~~~~~A~~AR~~Lh~~~f~---g~~~ 76 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTY----DKDTTFQYFKSF-KRVRINFSNPLSAADARLRLHKTEFL---GKEM 76 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTT----CSSCEEEEETTT-TEEEEECSSTTHHHHHHHTSTTSEET---TEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhh----CcCcceeecCcc-eEEEEEeCChHHHHHHHHHhccceec---Ccee
Confidence 4679999999765 43 4567788877 6655542 22 34689999999999999999999998 8999
Q ss_pred EEEEccc
Q 020917 121 HTEMAKK 127 (320)
Q Consensus 121 ~v~~a~~ 127 (320)
+|.|+..
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999973
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.63 E-value=0.00021 Score=51.94 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=46.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhc
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~ln 108 (320)
..+.++| ++|..+.-.||..+|+.|+++...-|.. ..|||.|.+++.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidD----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEET----TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 3566777 9999999999999999996555444554 489999999999999999775
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=0.00051 Score=50.49 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=54.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCC-CccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLP-GYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~-~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
.-.++|.|.|||..+.++.|.-.|+.-. .--|.+..+....+-|+|+|.+.+.|++.++ -..+.+. +..|.|..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~-k~~H~L~---~~~LsV~P 80 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLA-QADHELH---GAQLSLRP 80 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHT-CSCCBSS---SSBCEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhc-CCcceec---CeEEEEEc
Confidence 3468999999999999999999998841 2223444443222889999999999999976 3345665 57777754
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.59 E-value=0.00041 Score=50.24 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=55.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-eCC------c-ceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE-
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KGE------K-PMGFALFSTAQLAVAAKDALQEMIFDAETKSVL- 120 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~~~------k-g~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l- 120 (320)
.+|.|++||+.+||+++.+.+..+..+ ..... .+. . .-|+|.|.+.+++..-.+.++|..|.+..|...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~--d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEH--DYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCE--EEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccc--eEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 479999999999999999999988321 11222 111 1 789999999999999999999999965455322
Q ss_pred -EEEEc
Q 020917 121 -HTEMA 125 (320)
Q Consensus 121 -~v~~a 125 (320)
.|+||
T Consensus 80 a~VE~A 85 (91)
T 1uw4_A 80 AIVEFA 85 (91)
T ss_dssp CEEEEC
T ss_pred eEEEEc
Confidence 35665
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.00096 Score=49.02 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=54.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhcc---C--CCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSA---Q--PGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~---~--G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
...+|.|.|||++++++-|.-.|++ - |.|.++.... +-|+|+|.+.+.|++.|+. .-+.|.+ .+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~---~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHG---AQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSS---SBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecC---eEEEE
Confidence 3688999999999999999999986 2 3688888864 5699999999999999863 3456676 57777
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.34 E-value=0.0012 Score=47.83 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=46.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (320)
.++++| +.|++....||.++|+.||. ..|+.+.+ .-|||.|.+++.|..|++.++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD---TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD---TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET---TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 567778 99999999999999999994 44555544 569999999999999999774
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.22 E-value=0.0015 Score=49.55 Aligned_cols=62 Identities=6% Similarity=0.006 Sum_probs=53.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g 288 (320)
.+-|-|.+.+... -+.|.+.|++||.|++... ......-.|.|.+..+|++||. .||..|.|
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 5678899999874 6788899999999998887 3456899999999999999995 79999986
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.20 E-value=0.0002 Score=52.14 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=43.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhc
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~ln 108 (320)
.+.++| ++|..+.-.||..+|+.|+++...-|.. ..|||.|.+++.|..|+..++
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidD----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEET----TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 456677 9999999999999999994222222222 589999999999999999775
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.17 E-value=0.00077 Score=49.10 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=46.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (320)
.++|+| +.|.+....||.++|+.|| -..|+.+.+ .-|||.|.+++.|..|++.+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD---TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD---TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET---TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 356777 9999999999999999999 455666654 569999999999999999875
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.10 E-value=0.0009 Score=48.78 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=54.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---e----CCc-ceEEEEeCCHHHHHHHHHHhcCceeCcCCCC--
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K----GEK-PMGFALFSTAQLAVAAKDALQEMIFDAETKS-- 118 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~----~~k-g~aFV~F~~~e~A~~A~~~lng~~~~~~~gr-- 118 (320)
.-+|.|+.||+.+||+++.+.+..+... .-... + ... .-|||.|.+.++...-.+..+|..|.+..|.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~--d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAH--DYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSE--EECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCcc--ceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 4579999999999999998888776321 11111 1 111 7799999999999999999999999654553
Q ss_pred eEEEEEc
Q 020917 119 VLHTEMA 125 (320)
Q Consensus 119 ~l~v~~a 125 (320)
+-.|+||
T Consensus 87 ~a~VE~A 93 (97)
T 2l08_A 87 PAVVEFA 93 (97)
T ss_dssp EEEEEEC
T ss_pred eeEEEec
Confidence 3335555
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.95 E-value=0.0023 Score=46.58 Aligned_cols=77 Identities=12% Similarity=0.288 Sum_probs=57.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC------cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCc--ee
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV--GM 294 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~------~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~--~l 294 (320)
+-.|.|+.||+.+||+++.+.++..-.+....++.... -.-|+|.|.+.++...-.+.++|+.|-++.+. +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45799999999999999998888776665554443111 23589999999999999999999999764212 34
Q ss_pred EEEee
Q 020917 295 RIQYS 299 (320)
Q Consensus 295 ~v~~a 299 (320)
.|+||
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 46665
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.00 E-value=0.0035 Score=58.94 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHH
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHH 279 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~ 279 (320)
.++|||. .+..+++.+|.+.|++||.|.++.+.. ....|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~-~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE-SFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC-SSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc-cCCeEEEEEeCCHHHHHHHHh
Confidence 5789997 688899999999999999999998875 334699999999999887654
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.33 E-value=0.023 Score=43.61 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=52.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeE-EEEEe---------------c--CCcceEEEEEcCHHHHHHHHHHhCCC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQ-MKVLR---------------Q--ERHTVCFIEFEDVNSASSVHHNLQGA 284 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~-v~i~~---------------~--~~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (320)
.+-+.|.+.|+.. ...+.+.|++||.|++ +...+ . .+.+..-|+|++..+|.+||+ -||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3567788888764 5778899999999876 21110 0 124688999999999999994 9999
Q ss_pred eeCCCCCceeEEEe
Q 020917 285 VIPSSGSVGMRIQY 298 (320)
Q Consensus 285 ~l~g~~~~~l~v~~ 298 (320)
.|.| .-|-|..
T Consensus 85 ii~G---~mIGV~P 95 (132)
T 3p3d_A 85 VFNG---VLLGVIP 95 (132)
T ss_dssp EETT---EECEEEE
T ss_pred EeCc---EEEEEEE
Confidence 9998 5666655
No 398
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.81 E-value=0.17 Score=38.15 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=55.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeC--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
...+-|.|-+.|.... ..+...|+.| |.|++... ..+.-.|.|.+..+|++||. .||..+.. +-.|-|.+
T Consensus 22 ~~~~wVtVFGFp~~~~-~~VL~~F~~~----G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g--~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQASA-SYILLQFAQY----GNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGE--SIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGGH-HHHHHHHHTT----SCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETT--TEECEEEE
T ss_pred CCCCEEEEECCCHHHH-HHHHHHHHhh----CcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecC--CEEEEEEE
Confidence 3478899999999864 5677789999 98888743 45999999999999999998 89999962 23344444
Q ss_pred c
Q 020917 125 A 125 (320)
Q Consensus 125 a 125 (320)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=90.71 E-value=0.1 Score=49.01 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=37.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHH
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKD 105 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~ 105 (320)
..|+|||. .+..+++.+|.+.|+.| |.|..+ +...-||.|+|.+.+++..+++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~----g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQF----GPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGG----SCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhc----CCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 37899998 79999999999999999 655332 3334799999999999997765
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.06 E-value=0.45 Score=36.40 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=51.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----e------------------CCcceEEEEeCCHHHHHHHHHH
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K------------------GEKPMGFALFSTAQLAVAAKDA 106 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~------------------~~kg~aFV~F~~~e~A~~A~~~ 106 (320)
..-|.|-+.|...+. .+.+.|++| |.|+.. + ...+.-.|+|++..+|.+||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~----G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~- 80 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEF----GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL- 80 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGG----SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhh----ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-
Confidence 456888999887765 556789999 555441 0 013677999999999999998
Q ss_pred hcCceeCcCCCCeEEEEEcc
Q 020917 107 LQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 107 lng~~~~~~~gr~l~v~~a~ 126 (320)
.||..|. |..|-|.+..
T Consensus 81 ~NG~ii~---G~mIGV~Py~ 97 (132)
T 3p3d_A 81 ENGAVFN---GVLLGVIPYT 97 (132)
T ss_dssp TTTCEET---TEECEEEECC
T ss_pred hCCeEeC---cEEEEEEECC
Confidence 9999997 6777777664
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.51 E-value=1 Score=42.86 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=43.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhc
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~ln 108 (320)
...++|+ ++..+...+|.++|+.|+.++ |..+ +...|||.|.+.+.|..++.+++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~--V~wi--ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ--ISWI--DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE--EEEC--SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE--EEEE--cCCeEEEEECCHHHHHHHHHHHH
Confidence 4577776 999999999999999994222 2222 23689999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.06 E-value=0.91 Score=43.19 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=45.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (320)
..+|+|+ ++......+|.++|+.||. .+|+.+ +...|||.|.+.+.|..++++++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWI---DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEEC---SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEE---cCCeEEEEECCHHHHHHHHHHHH
Confidence 3577787 8888889999999999995 355554 34679999999999999999985
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=84.53 E-value=2.2 Score=28.91 Aligned_cols=68 Identities=9% Similarity=0.296 Sum_probs=44.7
Q ss_pred eEEEe-CCCCCCCHHHHHHhhccCCC-----eeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 225 TLFIG-NLGESINEEELRGLFSAQPG-----FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 225 ~LfV~-NL~~~~tee~L~~~F~~~G~-----i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
+|||. +--..+...+|..+++.-+. |=.|++.. .|.||+-.. +.|..+++.|++..+.| +.++|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~~-~~~~~~~~~l~~~~i~g---~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEILN-GKGPHVLKVMKNTTVKG---KQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEECT-TCHHHHHHHHTTCCC------CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEECH-HHHHHHHHHhccccCcC---ceEEEEE
Confidence 56663 22345677788887776554 56666653 578999764 67889999999999999 8999887
Q ss_pred ec
Q 020917 299 SK 300 (320)
Q Consensus 299 ak 300 (320)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 404
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=53.84 E-value=3.3 Score=32.38 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=19.2
Q ss_pred HHHHHHhhhCCCccccEEEeeCCcceEEEEeC
Q 020917 64 RELQNLLRWLPGYEASQVNYKGEKPMGFALFS 95 (320)
Q Consensus 64 e~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~ 95 (320)
+|+.+||... |.|..+...|||+||.-.
T Consensus 2 ~~~~~l~~~~----G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGA----GICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEE----EEEEEEETTTTEEEEEEE
T ss_pred Ccccccccce----eEEEEEECCCCeeEEeeC
Confidence 4455555555 888888888999999975
No 405
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=53.68 E-value=10 Score=25.01 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=17.3
Q ss_pred ccccEEEeeCCcceEEEEeCC
Q 020917 76 YEASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 76 ~~~~iv~~~~~kg~aFV~F~~ 96 (320)
+++.|+++...+|.++|.|.|
T Consensus 30 Y~gtI~~V~~~~gtC~V~F~D 50 (66)
T 2eqj_A 30 YLGTIKKINILKQSCFIIFED 50 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETT
T ss_pred EEeEEEEEccCCcEEEEEEcc
Confidence 467888888778999999965
No 406
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.07 E-value=12 Score=24.74 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=16.4
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020917 77 EASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 77 ~~~iv~~~~~kg~aFV~F~~ 96 (320)
.+.|+++...++.+||.|.|
T Consensus 27 lGtV~kV~~~~~~ClV~FeD 46 (68)
T 2e5p_A 27 LGTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred EeEEEEEecCCcEEEEEEcc
Confidence 47778888778999999954
No 407
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=47.64 E-value=63 Score=21.89 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=17.7
Q ss_pred ccccEEEeeCCcceEEEEeCC
Q 020917 76 YEASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 76 ~~~~iv~~~~~kg~aFV~F~~ 96 (320)
+.|.|+++...++.+||.|.|
T Consensus 43 YLGTI~kV~~~~e~ClV~F~D 63 (79)
T 2m0o_A 43 YLGTIKKVDSAREVCLVQFED 63 (79)
T ss_dssp CEEEEEEEETTTTEEEEEETT
T ss_pred EeEEEEEeccCCCEEEEEEcC
Confidence 458889898888999999966
No 408
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.75 E-value=8.4 Score=25.01 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=15.2
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020917 77 EASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 77 ~~~iv~~~~~kg~aFV~F~~ 96 (320)
.+.|+++...+..+||.|.|
T Consensus 25 lgtV~kV~~~~~~ClV~FeD 44 (63)
T 2e5q_A 25 LGKIKRVSSSKQSCLVTFED 44 (63)
T ss_dssp EEEECCCCSTTSEEEEEETT
T ss_pred EEEEEEEecCCCEEEEEEcc
Confidence 36666776678999999965
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.26 E-value=44 Score=26.61 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=36.8
Q ss_pred eEEEeCCCC-C--------CCHHHHHHhh--ccCCCeeEEEEEecCC-cceEEEEEcCHHHH-HHHHH
Q 020917 225 TLFIGNLGE-S--------INEEELRGLF--SAQPGFKQMKVLRQER-HTVCFIEFEDVNSA-SSVHH 279 (320)
Q Consensus 225 ~LfV~NL~~-~--------~tee~L~~~F--~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A-~~Al~ 279 (320)
+..|-|++. . ....+|++.| ..|..++...+....+ .|+++|.|.+--.- ..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 566778875 1 2347899977 9999877665553332 78999999964333 33443
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=44.66 E-value=78 Score=22.15 Aligned_cols=56 Identities=11% Similarity=-0.018 Sum_probs=45.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (320)
++.+-|-|+|..+-..++.-.....|--..++.+. |.|.|.|.+.++...|++.|-
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHHE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHHH
Confidence 67788999999988888776666667656666663 779999999999999998773
No 411
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=41.30 E-value=22 Score=22.72 Aligned_cols=20 Identities=5% Similarity=0.097 Sum_probs=16.3
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020917 77 EASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 77 ~~~iv~~~~~kg~aFV~F~~ 96 (320)
.|.|+++...+..++|.|.|
T Consensus 21 lGtI~~V~~~~~~clV~F~D 40 (58)
T 4hcz_A 21 LGTIKKVDSAREVCLVQFED 40 (58)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred eEEEEEEecCCCEEEEEEcC
Confidence 47788887777899999965
No 412
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=40.97 E-value=7.1 Score=30.44 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=18.7
Q ss_pred HHHHHhhccCCCeeEEEEEecCCcceEEEEEc
Q 020917 238 EELRGLFSAQPGFKQMKVLRQERHTVCFIEFE 269 (320)
Q Consensus 238 e~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~ 269 (320)
+|+-++|...|.|+.+. ..+||+||...
T Consensus 2 ~~~~~l~~~~G~Vkwfn----~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN----VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE----TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE----CCCCeeEEeeC
Confidence 45667788888877664 45799999976
No 413
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=39.36 E-value=15 Score=20.13 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=14.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhh
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRW 72 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~ 72 (320)
...|+||||+-| |+|+.+-+.
T Consensus 3 gqvrtiwvggtp-----eelkklkee 23 (36)
T 2ki0_A 3 GQVRTIWVGGTP-----EELKKLKEE 23 (36)
T ss_dssp CSCCCCCBCCCH-----HHHHHHHHH
T ss_pred ceeEEEEecCCH-----HHHHHHHHH
Confidence 457899999864 666666543
No 414
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=38.11 E-value=54 Score=25.27 Aligned_cols=27 Identities=4% Similarity=-0.099 Sum_probs=22.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWL 73 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~ 73 (320)
+...-||||++...-..+.|.+.|..+
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l 48 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKL 48 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHC
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhC
Confidence 346789999999888888888888877
No 415
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=36.97 E-value=88 Score=20.54 Aligned_cols=64 Identities=6% Similarity=0.038 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHhhhCCCccc-cEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 59 DDVKERELQNLLRWLPGYEA-SQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 59 ~~~tee~L~~lF~~~~~~~~-~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
..+..-+|..++..-.+..+ .|=.++-.-.|.||+-... .|..+++.|++..+. |+.++|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~~-~~~~~~~~l~~~~i~---g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILNG-KGPHVLKVMKNTTVK---GKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECTT-CHHHHHHHHTTCCC------CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECHH-HHHHHHHHhccccCc---CceEEEEECC
Confidence 34677788888887755433 3322222237899988554 577888889998887 7999888764
No 416
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=34.41 E-value=27 Score=23.55 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=14.7
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020917 78 ASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 78 ~~iv~~~~~kg~aFV~F~~ 96 (320)
|.|..+...||||||.=.+
T Consensus 3 G~Vkwfn~~KGfGFI~~~d 21 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDD 21 (74)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 5666677789999998754
No 417
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=32.24 E-value=33 Score=22.42 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=14.1
Q ss_pred ccEEEeeCCcceEEEEeC
Q 020917 78 ASQVNYKGEKPMGFALFS 95 (320)
Q Consensus 78 ~~iv~~~~~kg~aFV~F~ 95 (320)
|.|......||||||.=.
T Consensus 3 G~Vk~fn~~kGfGFI~~~ 20 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKD 20 (66)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred EEEEEEECCCCEEEEecC
Confidence 556666778899999864
No 418
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=31.37 E-value=1.5e+02 Score=22.08 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=34.2
Q ss_pred HHHHHhhccCC-CeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeC
Q 020917 238 EELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIP 287 (320)
Q Consensus 238 e~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~ 287 (320)
.++.+.+...| +|..+.......+....|.+++.+.|.+++.. +|+.+.
T Consensus 87 a~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v~ 136 (144)
T 2f06_A 87 AKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDLL 136 (144)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEEe
Confidence 56667777777 56565544224467778899999998888876 677664
No 419
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=29.75 E-value=35 Score=22.37 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=13.8
Q ss_pred ccEEEeeCCcceEEEEeC
Q 020917 78 ASQVNYKGEKPMGFALFS 95 (320)
Q Consensus 78 ~~iv~~~~~kg~aFV~F~ 95 (320)
|.|......|||+||.=.
T Consensus 4 G~Vk~fn~~kGfGFI~~~ 21 (67)
T 3cam_A 4 GIVKWFNDAKGFGFITPD 21 (67)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred EEEEEEECCCCeEEEecC
Confidence 556666778899999864
No 420
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=28.98 E-value=37 Score=22.15 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=13.8
Q ss_pred ccEEEeeCCcceEEEEeC
Q 020917 78 ASQVNYKGEKPMGFALFS 95 (320)
Q Consensus 78 ~~iv~~~~~kg~aFV~F~ 95 (320)
|.|......||||||.=.
T Consensus 4 G~Vk~fn~~kGfGFI~~~ 21 (66)
T 1c9o_A 4 GKVKWFNNEKGYGFIEVE 21 (66)
T ss_dssp EEEEEEETTTTEEEEEET
T ss_pred eEEEEEECCCCeEEEecC
Confidence 556666778899999864
No 421
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=27.75 E-value=36 Score=23.15 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=13.6
Q ss_pred ccEEEeeCCcceEEEEeC
Q 020917 78 ASQVNYKGEKPMGFALFS 95 (320)
Q Consensus 78 ~~iv~~~~~kg~aFV~F~ 95 (320)
|.|..+...|||+||+=.
T Consensus 11 G~Vkwfn~~kGfGFI~~~ 28 (79)
T 1h95_A 11 GTVKWFNVRNGYGFINRN 28 (79)
T ss_dssp EEEEEEETTTTEEEEEEG
T ss_pred eEEEEEECCCCcEEEecC
Confidence 555666778899999864
No 422
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=27.72 E-value=39 Score=22.54 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=14.3
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020917 78 ASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 78 ~~iv~~~~~kg~aFV~F~~ 96 (320)
|.|..+...||||||.=.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 4 GRVKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEEEETTTTEEEEECTT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 5566667788999998643
No 423
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=27.42 E-value=50 Score=22.19 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=15.0
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020917 77 EASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 77 ~~~iv~~~~~kg~aFV~F~~ 96 (320)
.|.|..+...||||||.=.+
T Consensus 4 ~G~Vkwfn~~KGfGFI~~~d 23 (74)
T 2k5n_A 4 NGTITTWFKDKGFGFIKDEN 23 (74)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred ceEEEEEECCCCeEEEecCC
Confidence 35666677788999998754
No 424
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=25.86 E-value=42 Score=22.26 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=15.0
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020917 77 EASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 77 ~~~iv~~~~~kg~aFV~F~~ 96 (320)
.|.|......||||||.=.+
T Consensus 7 ~G~Vk~fn~~kGfGFI~~~~ 26 (71)
T 3i2z_B 7 KGNVKWFNESKGFGFITPED 26 (71)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred cEEEEEEECCCCcEEEecCC
Confidence 36666667788999998744
No 425
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=22.92 E-value=62 Score=16.63 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=11.2
Q ss_pred CHHHHHHHhhhCC
Q 020917 62 KERELQNLLRWLP 74 (320)
Q Consensus 62 tee~L~~lF~~~~ 74 (320)
.|.+|++++++|.
T Consensus 14 nekelrdfiekfk 26 (28)
T 1fme_A 14 NEKELRDFIEKFK 26 (28)
T ss_dssp CHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHhc
Confidence 5889999999983
No 426
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=22.75 E-value=59 Score=25.11 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=16.3
Q ss_pred ccccEEEeeCCcceEEEEeCC
Q 020917 76 YEASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 76 ~~~~iv~~~~~kg~aFV~F~~ 96 (320)
..|.|..+...||||||.-.+
T Consensus 63 ~~GtVKwFn~~KGfGFI~~dd 83 (147)
T 3aqq_A 63 YKGVCKCFCRSKGHGFITPAD 83 (147)
T ss_dssp EEEEEEEEETTTTEEEEEESS
T ss_pred cceEEEEEeCCCCeEEeccCC
Confidence 346777778889999999854
No 427
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=22.67 E-value=2e+02 Score=20.05 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=41.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHh
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDAL 107 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~l 107 (320)
..++-+-|-|+|..+-..++.-....++-..-|-.. -|.|.|.|.+.++-+.|++.|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi----dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI----DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC----SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee----cCeeEEEecCChHHHHHHHHH
Confidence 457888899999998888877666666221122211 289999999999999999866
No 428
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.33 E-value=1.2e+02 Score=20.95 Aligned_cols=54 Identities=6% Similarity=0.036 Sum_probs=38.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-eC--CcceEEEEeCCHHHHHHHH
Q 020917 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KG--EKPMGFALFSTAQLAVAAK 104 (320)
Q Consensus 51 ~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~~--~kg~aFV~F~~~e~A~~A~ 104 (320)
+-|+-......+..+++..++.++++...-+.. .. ...-|||.+..-.+|....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHH
Confidence 456777788999999999999997765544433 22 2245999998877776643
No 429
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=21.93 E-value=60 Score=27.73 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhh
Q 020917 50 RTIFITGLPDDVKERELQNLLRW 72 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~ 72 (320)
..+.|+|||+.++..-|..+++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH
T ss_pred ccEEEecCcccccHHHHHHHhcC
Confidence 46899999999999999999976
No 430
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=21.84 E-value=58 Score=22.85 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=11.5
Q ss_pred ccEEEeeCCcceEEEEe
Q 020917 78 ASQVNYKGEKPMGFALF 94 (320)
Q Consensus 78 ~~iv~~~~~kg~aFV~F 94 (320)
|.|-.+...|||+||+-
T Consensus 11 G~VKWFn~~KGfGFI~~ 27 (90)
T 3ulj_A 11 GHCKWFNVRMGFGFISM 27 (90)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred eEEEEeeCCCCeEEeEe
Confidence 34444467789999974
No 431
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=21.59 E-value=1.6e+02 Score=18.55 Aligned_cols=59 Identities=19% Similarity=0.052 Sum_probs=42.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAV 285 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~ 285 (320)
..+|.|.+|.=.-=...+...+.+ ..|..+.+- -..+.+.|.|.+.++-..+++. -|+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~--~~~~~~~v~~~~~~~i~~~i~~-~Gy~ 64 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVD--LNEAVVAGNKEDVDKYIKAVEA-AGYQ 64 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEEC--SSEEEEEEEGGGHHHHHHHHHH-TTCE
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEE--ccCCEEEEEECCHHHHHHHHHH-cCCc
Confidence 457889999876667888888989 889888773 3446688888855666666654 3554
Done!