BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020918
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F6O|A Chain A, Crystal Structure Of The Yeast Metacaspase Yca1
Length = 350
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 154/310 (49%), Gaps = 64/310 (20%)
Query: 47 AVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQ 106
A++ G++Y K +L+G IND N+ + L N + + + I++LT+++ D + PT+ N+
Sbjct: 56 ALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMI 115
Query: 107 KALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINS 166
+A++WLV D + DSL ++SGHG + D + DE DG D+ I PVDF +G IID++++
Sbjct: 116 RAMQWLVKDAQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHD 175
Query: 167 IIVKPLKEGVTLHAIVDACHSGTILDLEYVYN-----KYQMTWEDNRP---------PSG 212
I+VKPL++GV L A+ D+CHSGT+LDL Y Y+ K W+D +G
Sbjct: 176 IMVKPLQQGVRLTALFDSCHSGTVLDLPYTYSTKGIIKEPNIWKDVGQDGLQAAISYATG 235
Query: 213 ARKATDGGLA-----------------------------ICLSACQDNQLASDTSAFTGN 243
R A G L + LS +DNQ ++D N
Sbjct: 236 NRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSAADVVMLSGSKDNQTSADAVEDGQN 295
Query: 244 TMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKP 303
T G M++ +++ P SY LL +R+ K SQKP
Sbjct: 296 T--GAMSHAFIKVMTLQPQQSYLSLL-------------------QNMRKELAGKYSQKP 334
Query: 304 TLSSSGRFEV 313
LSSS +V
Sbjct: 335 QLSSSHPIDV 344
>pdb|4AFR|A Chain A, The Structure Of Metacaspase 2 (C213a Mutant) From T.
Brucei
pdb|4AFV|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined
In The Presence Of Calcium Chloride
Length = 367
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 97/196 (49%), Gaps = 8/196 (4%)
Query: 47 AVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEE-KDEMYSPTKKNI 105
A+ G++Y L G NDV+ M L E +I++ E+ PT+ NI
Sbjct: 95 ALFIGINYYGTSAALSGCCNDVKQMLATLQKKGLPINEAVILVDEDNFPGRTDQPTRDNI 154
Query: 106 QKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDIN 165
+ + WLV D + GD L F++SGHG Q D + +D+ I PVDF K G I+D+DI+
Sbjct: 155 VRYMAWLVKDAKPGDVLFFHYSGHG-TQCKSRGDSDEKYDQCIAPVDFQKSGCIVDDDIH 213
Query: 166 SIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDG----GL 221
++ L E V L A+ D HSG+I+DL + Y P ++ +G G
Sbjct: 214 KLLFSRLPEKVRLTAVFDCAHSGSIMDLPFTYVCSGGEQASGTP--HMKRIREGNDVLGD 271
Query: 222 AICLSACQDNQLASDT 237
+ +S C D Q ++D
Sbjct: 272 VMMISGCADEQTSADV 287
>pdb|4AFP|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined
In The Presence Of Samarium
Length = 367
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 97/196 (49%), Gaps = 8/196 (4%)
Query: 47 AVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEE-KDEMYSPTKKNI 105
A+ G++Y L G NDV+ M L E +I++ E+ PT+ NI
Sbjct: 95 ALFIGINYYGTSAALSGCCNDVKQMLATLQKKGLPINEAVILVDEDNFPGRTDQPTRDNI 154
Query: 106 QKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDIN 165
+ + WLV D + GD L F++SGHG Q D + +D+ I PVDF K G I+D+DI+
Sbjct: 155 VRYMAWLVKDAKPGDVLFFHYSGHG-TQCKSRGDSDEKYDQCIAPVDFQKSGCIVDDDIH 213
Query: 166 SIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDG----GL 221
++ L E V L A+ D HSG+I+DL + Y P ++ +G G
Sbjct: 214 KLLFSRLPEKVRLTAVFDCGHSGSIMDLPFTYVCSGGEQASGTP--HMKRIREGNDVLGD 271
Query: 222 AICLSACQDNQLASDT 237
+ +S C D Q ++D
Sbjct: 272 VMMISGCADEQTSADV 287
>pdb|4AF8|A Chain A, The Structural Basis For Metacaspase Substrate Specificity
And Activation
Length = 367
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 97/196 (49%), Gaps = 8/196 (4%)
Query: 47 AVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEE-KDEMYSPTKKNI 105
A+ G++Y L G NDV+ M L E +I++ E+ PT+ NI
Sbjct: 95 ALFIGINYYGTSAALSGCCNDVKQMLATLQKRGLPINEAVILVDEDNFPGRTDQPTRDNI 154
Query: 106 QKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDIN 165
+ + WLV D + GD L F++SGHG Q D + +D+ I PVDF K G I+D+DI+
Sbjct: 155 VRYMAWLVKDAKPGDVLFFHYSGHG-TQCKSRGDSDEKYDQCIAPVDFQKSGCIVDDDIH 213
Query: 166 SIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDG----GL 221
++ L E V L A+ D HSG+I+DL + Y P ++ +G G
Sbjct: 214 KLLFSRLPEKVRLTAVFDCGHSGSIMDLPFTYVCSGGEQASGTP--HMKRIREGNDVLGD 271
Query: 222 AICLSACQDNQLASDT 237
+ +S C D Q ++D
Sbjct: 272 VMMISGCADEQTSADV 287
>pdb|3BIJ|A Chain A, Crystal Structure Of Protein Gsu0716 From Geobacter
Sulfurreducens. Northeast Structural Genomics Target
Gsr13
pdb|3BIJ|B Chain B, Crystal Structure Of Protein Gsu0716 From Geobacter
Sulfurreducens. Northeast Structural Genomics Target
Gsr13
pdb|3BIJ|C Chain C, Crystal Structure Of Protein Gsu0716 From Geobacter
Sulfurreducens. Northeast Structural Genomics Target
Gsr13
Length = 285
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 40/181 (22%)
Query: 99 SPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGM 158
+ T+ + A+ KGD +SGHG + PD +NDE DG DET C L +G
Sbjct: 54 AATRAKVIDAIGKAAKALGKGDIFXLSYSGHGGQVPDTSNDEPDGVDETWC----LFDGE 109
Query: 159 IIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYN---------------KYQM- 202
+ID+++ +++ K GV + D+CHSGT++ Y YN +Y+
Sbjct: 110 LIDDELYALLGK-FAAGVRVLVFSDSCHSGTVVKXAY-YNGTTAARSAGPDEGEIRYRAX 167
Query: 203 -------TWEDNRP--PSGARKATDGGLA------ICLSACQDNQLASDTS---AFTGNT 244
T+ NR + +K LA + +S CQDNQL+ D + AFTG
Sbjct: 168 PQSVAXRTYRANREFYDTIQQKTKKVDLADVKASILLISGCQDNQLSQDGAFNGAFTGQL 227
Query: 245 M 245
+
Sbjct: 228 L 228
>pdb|1HFB|A Chain A, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|B Chain B, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|C Chain C, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|D Chain D, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|E Chain E, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|F Chain F, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|G Chain G, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|H Chain H, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1OAB|A Chain A, Crystal Structure Of The Tyrosine Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Phosphoenolpyruvate And Manganese(Ii)
pdb|1OAB|B Chain B, Crystal Structure Of The Tyrosine Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Phosphoenolpyruvate And Manganese(Ii)
pdb|1OF8|A Chain A, Double Complex Of The Tyrosine Sensitive Dahp Synthase
From S. Cerevisiae With Co2+, Pep And The E4p Analogoue
G3p
pdb|1OF8|B Chain B, Double Complex Of The Tyrosine Sensitive Dahp Synthase
From S. Cerevisiae With Co2+, Pep And The E4p Analogoue
G3p
pdb|1OFA|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Phosphoenolpyruvate And Cobalt(Ii)
pdb|1OFA|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Phosphoenolpyruvate And Cobalt(Ii)
pdb|1OFB|A Chain A, Crystal Structure Of The Tyrosine-regulated
3-deoxy-d-arabino-heptulosonate-7-phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(ii)
pdb|1OFB|B Chain B, Crystal Structure Of The Tyrosine-regulated
3-deoxy-d-arabino-heptulosonate-7-phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(ii)
pdb|1OFO|A Chain A, Crystal Structure Of The Tyrosine Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
2-Phosphoglycolate
pdb|1OFO|B Chain B, Crystal Structure Of The Tyrosine Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
2-Phosphoglycolate
pdb|1OFP|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae
pdb|1OFP|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae
pdb|1OFP|C Chain C, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae
pdb|1OFP|D Chain D, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae
pdb|1OFQ|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(Ii)
pdb|1OFQ|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(Ii)
pdb|1OFQ|C Chain C, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(Ii)
pdb|1OFQ|D Chain D, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(Ii)
pdb|1OFR|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|E Chain E, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|F Chain F, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OF6|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|C Chain C, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|D Chain D, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|E Chain E, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|F Chain F, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|G Chain G, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|H Chain H, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OFR|C Chain C, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|D Chain D, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|G Chain G, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|H Chain H, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
Length = 370
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 210 PSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGV 248
P G + TDG L + + AC Q A+ + F G T +GV
Sbjct: 197 PVGFKNGTDGTLNVAVDAC---QAAAHSHHFMGVTKHGV 232
>pdb|2V0O|A Chain A, Fcho2 F-Bar Domain
pdb|2V0O|B Chain B, Fcho2 F-Bar Domain
pdb|2V0O|C Chain C, Fcho2 F-Bar Domain
Length = 276
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 53 SYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWL 112
S+ K K + GT+ V+ ++ + K +E E+E+ + T++ I+KA
Sbjct: 113 SHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKA---A 169
Query: 113 VNDCRKGDSLVFYFSGHGLRQPDFNNDETD 142
V + D+ Y + L + DF T+
Sbjct: 170 VKSKKATDTYKLYVEKYALAKADFEQKMTE 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,829,727
Number of Sequences: 62578
Number of extensions: 413563
Number of successful extensions: 946
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 10
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)