Query 020918
Match_columns 320
No_of_seqs 140 out of 1348
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:10:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1546 Metacaspase involved i 100.0 8.5E-44 1.9E-48 320.4 24.9 269 28-316 45-359 (362)
2 PF00656 Peptidase_C14: Caspas 100.0 1.9E-32 4E-37 247.4 13.0 215 45-277 1-230 (248)
3 cd00032 CASc Caspase, interleu 99.9 3.3E-20 7.1E-25 168.2 22.2 226 42-314 7-241 (243)
4 smart00115 CASc Caspase, inter 99.8 3E-19 6.6E-24 161.6 22.9 224 41-313 5-237 (241)
5 PF01650 Peptidase_C13: Peptid 99.6 1E-13 2.2E-18 126.3 15.5 193 45-280 1-236 (256)
6 COG4249 Uncharacterized protei 99.5 4.4E-14 9.5E-19 134.6 11.2 222 43-289 2-297 (380)
7 KOG1349 Gpi-anchor transamidas 98.6 8.2E-07 1.8E-11 78.9 13.0 189 41-274 25-261 (309)
8 COG5206 GPI8 Glycosylphosphati 98.3 1.7E-05 3.7E-10 71.0 13.9 188 41-273 25-260 (382)
9 KOG1348 Asparaginyl peptidases 98.2 6E-05 1.3E-09 70.4 14.3 130 40-192 41-213 (477)
10 PF14538 Raptor_N: Raptor N-te 98.0 3.9E-05 8.5E-10 64.6 9.7 104 65-191 43-150 (154)
11 COG4249 Uncharacterized protei 97.9 4.2E-06 9E-11 80.3 2.1 169 101-295 48-223 (380)
12 PF12770 CHAT: CHAT domain 96.8 0.014 3E-07 53.6 10.7 180 48-280 82-270 (287)
13 KOG1517 Guanine nucleotide bin 95.9 0.055 1.2E-06 57.3 10.1 165 63-254 137-308 (1387)
14 PF12070 DUF3550: Protein of u 85.2 8.5 0.00018 38.6 10.4 36 98-133 292-327 (513)
15 COG4995 Uncharacterized protei 84.1 3 6.6E-05 40.7 6.7 119 40-190 208-333 (420)
16 COG2379 GckA Putative glycerat 74.7 20 0.00043 34.7 8.7 80 42-133 35-126 (422)
17 PF13660 DUF4147: Domain of un 58.9 23 0.0005 32.0 5.5 78 43-132 39-129 (238)
18 COG1791 Uncharacterized conser 58.3 57 0.0012 28.0 7.3 57 68-132 52-108 (181)
19 PF10264 Stork_head: Winged he 57.4 35 0.00076 25.4 5.3 47 66-133 30-76 (80)
20 PF01364 Peptidase_C25: Peptid 54.4 28 0.0006 33.4 5.7 79 178-278 273-352 (378)
21 COG0648 Nfo Endonuclease IV [D 48.5 52 0.0011 30.5 6.2 63 101-189 119-181 (280)
22 cd00615 Orn_deC_like Ornithine 45.7 2E+02 0.0043 26.3 9.8 117 58-192 51-171 (294)
23 PF00220 Hormone_4: Neurohypop 42.7 12 0.00027 16.1 0.5 6 2-7 4-9 (9)
24 PLN02994 1-aminocyclopropane-1 38.5 86 0.0019 26.2 5.6 50 63-124 93-146 (153)
25 PF09827 CRISPR_Cas2: CRISPR a 38.0 1E+02 0.0022 22.2 5.3 52 66-127 14-67 (78)
26 cd00758 MoCF_BD MoCF_BD: molyb 36.8 1.4E+02 0.0031 23.9 6.5 44 68-124 21-64 (133)
27 cd01612 APG12_C Ubiquitin-like 36.1 1.3E+02 0.0027 22.7 5.6 55 67-128 27-82 (87)
28 PF03415 Peptidase_C11: Clostr 35.4 4.3E+02 0.0093 25.7 12.1 82 100-190 78-160 (397)
29 PF13768 VWA_3: von Willebrand 34.9 1.1E+02 0.0024 24.7 5.8 46 85-132 2-47 (155)
30 COG1350 Predicted alternative 33.4 51 0.0011 31.4 3.6 34 101-134 384-419 (432)
31 KOG3425 Uncharacterized conser 32.9 55 0.0012 26.4 3.2 24 105-128 11-34 (128)
32 PF02698 DUF218: DUF218 domain 32.1 1.7E+02 0.0036 23.8 6.4 44 64-114 52-95 (155)
33 PRK03670 competence damage-ind 32.1 1.7E+02 0.0037 26.6 6.9 53 68-133 22-74 (252)
34 PRK10886 DnaA initiator-associ 31.3 1.5E+02 0.0033 25.8 6.2 77 42-131 39-121 (196)
35 COG2830 Uncharacterized protei 31.2 39 0.00083 28.9 2.2 20 116-135 7-26 (214)
36 PF00994 MoCF_biosynth: Probab 31.0 1.4E+02 0.0031 24.1 5.7 45 66-123 17-61 (144)
37 KOG1321 Protoheme ferro-lyase 30.4 1.7E+02 0.0037 27.8 6.5 61 67-135 174-241 (395)
38 cd00886 MogA_MoaB MogA_MoaB fa 29.7 3E+02 0.0065 22.6 7.5 44 70-124 24-67 (152)
39 PRK09814 beta-1,6-galactofuran 29.5 1.4E+02 0.0031 27.8 6.2 55 68-129 21-75 (333)
40 cd06259 YdcF-like YdcF-like. Y 29.5 1.6E+02 0.0034 23.8 5.7 44 65-115 50-93 (150)
41 TIGR00177 molyb_syn molybdenum 29.5 1.6E+02 0.0035 24.0 5.7 45 68-125 29-73 (144)
42 COG2179 Predicted hydrolase of 29.2 53 0.0011 28.1 2.7 36 144-183 35-70 (175)
43 COG0657 Aes Esterase/lipase [L 29.1 2.8E+02 0.0061 25.4 8.0 48 45-92 109-160 (312)
44 PRK01215 competence damage-ind 27.7 1.8E+02 0.0039 26.6 6.3 46 67-125 24-69 (264)
45 PF03749 SfsA: Sugar fermentat 25.6 3.7E+02 0.0079 23.9 7.6 72 96-188 134-206 (215)
46 PF06258 Mito_fiss_Elm1: Mitoc 25.5 4.1E+02 0.0088 24.9 8.4 73 43-131 146-219 (311)
47 KOG3573 Caspase, apoptotic cys 24.3 5.7E+02 0.012 23.6 11.2 201 58-309 87-292 (300)
48 cd06446 Trp-synth_B Tryptophan 24.1 2.4E+02 0.0052 27.0 6.7 34 101-134 329-362 (365)
49 PRK07116 flavodoxin; Provision 23.0 48 0.001 27.6 1.5 14 120-133 4-17 (160)
50 PF01878 EVE: EVE domain; Int 22.9 62 0.0014 26.3 2.1 17 112-128 36-52 (143)
51 COG2194 Predicted membrane-ass 22.5 1E+02 0.0022 31.5 4.0 14 120-133 445-458 (555)
52 TIGR00230 sfsA sugar fermentat 21.8 5.2E+02 0.011 23.2 7.9 69 96-187 147-217 (232)
53 smart00852 MoCF_biosynth Proba 21.8 2.9E+02 0.0062 22.0 5.8 44 67-123 19-62 (135)
54 cd00885 cinA Competence-damage 21.6 2.8E+02 0.0061 23.4 5.9 45 68-125 21-65 (170)
55 TIGR00263 trpB tryptophan synt 21.1 3.1E+02 0.0066 26.5 6.8 34 101-134 345-378 (385)
56 PRK00809 hypothetical protein; 21.0 89 0.0019 25.9 2.6 21 111-131 30-51 (144)
57 PRK05569 flavodoxin; Provision 20.7 58 0.0013 26.1 1.5 14 120-133 3-16 (141)
58 PRK07591 threonine synthase; V 20.6 2.8E+02 0.006 27.2 6.5 35 100-134 358-394 (421)
No 1
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-44 Score=320.40 Aligned_cols=269 Identities=40% Similarity=0.670 Sum_probs=215.9
Q ss_pred ccCCCCCCCCC--CCCCCCeEEEEEEecCCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHH
Q 020918 28 SLNTKPFSLSS--SSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNI 105 (320)
Q Consensus 28 ~~~~~~~~~~~--~~~~~~~~ALlIGi~y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I 105 (320)
+....|.++|. ++...+|+||||||||.+....|+||+|||..|+++|.+++||+.++|.+|+|++++....||++||
T Consensus 45 ~~~~PpPq~~~~~~~~~gkrrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s~~~~PT~~Ni 124 (362)
T KOG1546|consen 45 SYPNPPPQPPYQYPQMAGKRRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDESPVRIPTGKNI 124 (362)
T ss_pred CCCCCCCCCCCCCccccccceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCcccccCcHHHH
Confidence 33334444443 3456788999999999998899999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHhCCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhccccCCceEEEEEeCC
Q 020918 106 QKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDAC 185 (320)
Q Consensus 106 ~~al~~l~~~~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~~~~~~~v~~ilDcC 185 (320)
+.||.||++.++++|.|||+|||||.+.++.+|++.+|+||+++|.|+...+.|.++++.+.|++.+++++++++|+|+|
T Consensus 125 r~Al~wLV~~aq~gD~LvfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp~G~~lt~I~DSC 204 (362)
T KOG1546|consen 125 RRALRWLVESAQPGDSLVFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLPKGCKLTAISDSC 204 (362)
T ss_pred HHHHHHHHhcCCCCCEEEEEecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHhccCCCceEEEEeecc
Confidence 99999999999999999999999999999998999999999999999998888888899999999999999999999999
Q ss_pred CCCCcCcchhhhcccccc------ccC-----------------------------CCC--Cccc------cccCCCCcE
Q 020918 186 HSGTILDLEYVYNKYQMT------WED-----------------------------NRP--PSGA------RKATDGGLA 222 (320)
Q Consensus 186 ~Sg~~~~~~~~~~~~~~~------~~~-----------------------------~~~--~~~~------~~~~~~g~~ 222 (320)
|||++.+.++....++.. |++ ... +... ....+....
T Consensus 205 HSGgliDlp~i~~~~~~ir~~~l~~e~~~d~l~~~tG~~~ge~~~i~~~l~d~f~~dts~~~~~~~~~~~~~~~~~~d~~ 284 (362)
T KOG1546|consen 205 HSGGLIDLPEIERTKGVIRNRNLPWEDHRDLLKAQTGTDGGEVGKIRGCLDDIFGEDTSPLPNGTIGDLGRQLKDSHDNG 284 (362)
T ss_pred cCCCcccchhheecccccccCccchHHhHHHHHhhcCCCCceeeeeecchhhhhcccCCCCCCcchhhhhhhcccCCCCc
Confidence 999999887754433100 110 000 0000 001112335
Q ss_pred EEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCCC
Q 020918 223 ICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQ 301 (320)
Q Consensus 223 ~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~q 301 (320)
++||.|+.+|+|.+.... | ...|+|++|+.+.|.++ +..+..+|.-..+..+. .+++.|
T Consensus 285 illSgcqadqtSad~~~~-G-~~~gAms~Aiq~i~~~n~g~~~~~~lvl~~~~~~~------------------~~g~sQ 344 (362)
T KOG1546|consen 285 ILLSGCQADQTSADASTY-G-HLYGAMSNAIQEILTENKGRITNKLLVLRARGALK------------------KQGFSQ 344 (362)
T ss_pred eEEecccccccccccccC-C-cchhHHHHHHHHHHhcCcccchhHHHHHHHhhhhh------------------ccCccc
Confidence 789999999999988753 3 35999999999999887 45555555544444332 588999
Q ss_pred ccccccccccccCCc
Q 020918 302 KPTLSSSGRFEVYKK 316 (320)
Q Consensus 302 ~P~~~~~~~~~~~~~ 316 (320)
.|+|+||.+++.+..
T Consensus 345 ~P~L~csd~~~~~~~ 359 (362)
T KOG1546|consen 345 EPGLYCSDPFDVAPF 359 (362)
T ss_pred CccccCCccccccce
Confidence 999999999987643
No 2
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=99.98 E-value=1.9e-32 Score=247.37 Aligned_cols=215 Identities=29% Similarity=0.481 Sum_probs=151.1
Q ss_pred eEEEEEEecCCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEE
Q 020918 45 RRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVF 124 (320)
Q Consensus 45 ~~ALlIGi~y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~ 124 (320)
|+||||||++|....+|+||.+|+++|+++| +.+||++.++ +..+ ||+++|+.+|.++.+...++|.++|
T Consensus 1 ~~AliIg~~~y~~~~~L~~~~~D~~~~~~~L-~~~gf~~~~~-l~~~--------~t~~~i~~~l~~l~~~~~~~D~~~~ 70 (248)
T PF00656_consen 1 KRALIIGVNYYQNPPPLPGAVNDAEAMAEAL-EKLGFDVENI-LIDN--------ATRANILKALRELLQRAQPGDSVVF 70 (248)
T ss_dssp EEEEEEEESSTSSTCHCTTHHHHHHHHHHHH-HHTTEEEEEE-EEES--------SSHHHHHHHHHHHHTSGGTCSEEEE
T ss_pred CEEEEEEeeCCCCCCCCCCHHHHHHHHHHHH-HHcCCceeec-cccc--------hHHHHHHHHHhhhhccCCCCCeeEE
Confidence 6999999995554699999999999999999 6899998776 4444 6999999999999998889999999
Q ss_pred EEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhccccCCceEEEEEeCCCCCCcCcchhhhccccc-c
Q 020918 125 YFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQM-T 203 (320)
Q Consensus 125 YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~~~~~~~v~~ilDcC~Sg~~~~~~~~~~~~~~-~ 203 (320)
||||||...++..+.+..+++++++|.|.. .+...++..++.+.++...+ ++||||||||.+.+.......... .
T Consensus 71 yfsGHG~~~~~~~~~~~~~~d~~~~~~d~~---~~~~~~l~~~~~~~~~~~~k-~~ilD~C~sg~~~~~~~~~~~~~~~~ 146 (248)
T PF00656_consen 71 YFSGHGIQVDGEGGDEDSGYDGYLLPLDAN---LILDDELRDLLCKSLPKKPK-LFILDCCRSGGFIDGLSSSSGESSKR 146 (248)
T ss_dssp EEESEEETETTCCSTEEEETSSEEEEHHHH---EEHHHHTSTTTTGGGTTS-E-EEEEESESSSBTBCEEEEEESSSTSS
T ss_pred EEeccccccCCccCcccccccceeeecchh---hhHHHHHhhhhhhhccCCcc-EEeeccccCCccCCcccccccccccc
Confidence 999999886653222223456688888732 34555555544333445556 799999999988754321110000 0
Q ss_pred ----ccCCCCCc--cccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC--------CCCCHHHHH
Q 020918 204 ----WEDNRPPS--GARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH--------PGLSYGDLL 269 (320)
Q Consensus 204 ----~~~~~~~~--~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~--------g~vt~~~L~ 269 (320)
......+. ...........++++||.++|.|+|.. ...+|+||++|+++|++. ...++.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~as~~~~~s~e~~----~~~~g~ft~~L~~~L~~~~~~~~~~~~~~~l~~~~ 222 (248)
T PF00656_consen 147 EERKLSSSIPPEDPNRSDVPSPSGFIVLSASRPGQTSYEDS----PGSGGLFTYALLEALKGNAADDPNQSWDELLEELL 222 (248)
T ss_dssp -EECHCCCCCCSSCCSEEEETTTSEEEEESSSTTBCEEEEC----TTTEEHHHHHHHHHHHHHTTTSTTCCTTSBHHHHH
T ss_pred ccccccccccccccccccccCCCCcEEEEeccccceeeccc----CccCHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 00000000 111112223357899999999999983 136899999999999763 257888888
Q ss_pred HHHHHHHH
Q 020918 270 DLIYERIE 277 (320)
Q Consensus 270 ~~v~~~v~ 277 (320)
.++.+++.
T Consensus 223 ~~v~~~~~ 230 (248)
T PF00656_consen 223 TEVNQKVA 230 (248)
T ss_dssp HHHHHHHH
T ss_pred HHHHhHCC
Confidence 88888886
No 3
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=99.87 E-value=3.3e-20 Score=168.16 Aligned_cols=226 Identities=16% Similarity=0.169 Sum_probs=158.6
Q ss_pred CCCeEEEEEEec-CCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHH-hCCCC
Q 020918 42 RPSRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVN-DCRKG 119 (320)
Q Consensus 42 ~~~~~ALlIGi~-y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~-~~~~~ 119 (320)
.++++|||||+. |.....++.|+.+|++.|+++|+ .+||. |.+..| +|...|.++|.++.+ +....
T Consensus 7 ~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~-~lgF~---V~~~~n--------lt~~~~~~~l~~f~~~~~~~~ 74 (243)
T cd00032 7 KRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFE-SLGYE---VEVKNN--------LTAEEILEELKEFASPDHSDS 74 (243)
T ss_pred CCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHH-HCCCE---EEEeCC--------CCHHHHHHHHHHHHhccCCCC
Confidence 379999999999 76557899999999999999996 79995 777777 599999999999985 67788
Q ss_pred CEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc-c---ccCCceEEEEEeCCCCCCcCcchh
Q 020918 120 DSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK-P---LKEGVTLHAIVDACHSGTILDLEY 195 (320)
Q Consensus 120 D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~-~---~~~~~~v~~ilDcC~Sg~~~~~~~ 195 (320)
|.++|||+|||... ++++.|. ..+.-++|...+.. . +....+ ++|+|||+...+.....
T Consensus 75 d~~v~~~~sHG~~~-------------~l~~~D~---~~v~l~~i~~~f~~~~~~sl~~kPK-l~~iqACRg~~~~~~~~ 137 (243)
T cd00032 75 DSFVCVILSHGEEG-------------GIYGTDG---DVVPIDEITSLFNGDNCPSLAGKPK-LFFIQACRGDELDLGVE 137 (243)
T ss_pred CeeEEEECCCCCCC-------------EEEEecC---cEEEHHHHHHhhccCCCccccCCCc-EEEEECCCCCcCCCcee
Confidence 99999999999752 6899994 33455667766542 1 122345 59999999876643211
Q ss_pred hhcccccccc--CCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcCC-CCCHHHHHHHH
Q 020918 196 VYNKYQMTWE--DNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHP-GLSYGDLLDLI 272 (320)
Q Consensus 196 ~~~~~~~~~~--~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~g-~vt~~~L~~~v 272 (320)
.......... .................++..|+.++..|+... ..+|+|+++|++.|...+ ...+.+++..|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~p~~~d~lv~ysT~pG~~a~r~~-----~~gS~fi~~l~~~l~~~~~~~~l~~il~~V 212 (243)
T cd00032 138 VDSGADEPPDVETEAEDDAVQTIPVEADFLVAYSTVPGYVSWRNT-----KKGSWFIQSLCQVLRKYAHSLDLLDILTKV 212 (243)
T ss_pred ccCccccccccccccccccccCCCCcccEEEEecCCCCeEeecCC-----CCCCEeHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 1000000000 000000111111222346667888999998764 357999999999999864 68999999999
Q ss_pred HHHHHhhhhcccccchhhhhhhhcCCCCCccccccccccccC
Q 020918 273 YERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVY 314 (320)
Q Consensus 273 ~~~v~~~~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~~ 314 (320)
++.|...... ..+..|.||..++..-++|
T Consensus 213 ~~~V~~~~~~-------------~~~~kQ~P~~~stL~k~~y 241 (243)
T cd00032 213 NRKVAEKFES-------------VNGKKQMPCFRSTLTKKLY 241 (243)
T ss_pred HHHHhhhhcc-------------CCCceeCCccccccceeEe
Confidence 9999876431 1446799999887655443
No 4
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=99.85 E-value=3e-19 Score=161.57 Aligned_cols=224 Identities=16% Similarity=0.141 Sum_probs=154.8
Q ss_pred CCCCeEEEEEEec-CCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh--CC
Q 020918 41 SRPSRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND--CR 117 (320)
Q Consensus 41 ~~~~~~ALlIGi~-y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~--~~ 117 (320)
+.++++|||||+. |.. ..+++|+.+|++.|+++|+ .+||. |.+..| +|..+|.+++.++.++ .+
T Consensus 5 ~~p~g~alII~n~~f~~-~~~r~g~~~D~~~l~~~f~-~lgF~---V~~~~d--------lt~~em~~~l~~~~~~~~~~ 71 (241)
T smart00115 5 SKPRGLALIINNENFHS-LPRRNGTDVDAENLTELFQ-SLGYE---VHVKNN--------LTAEEMLEELKEFAERPEHS 71 (241)
T ss_pred CCCCcEEEEEECccCCC-CcCCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhccccC
Confidence 3468999999999 764 8899999999999999996 79995 777777 4999999999999874 45
Q ss_pred CCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCCCCCcCcc
Q 020918 118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDL 193 (320)
Q Consensus 118 ~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~Sg~~~~~ 193 (320)
..|.++|||+|||..+ ++++.|.. .+.-++|...+.. .+....+ ++|||||+...+...
T Consensus 72 ~~d~~v~~~~sHG~~~-------------~l~~~D~~---~v~l~~i~~~f~~~~c~~L~~kPK-lffiqACRg~~~~~g 134 (241)
T smart00115 72 DSDSFVCVLLSHGEEG-------------GIYGTDHS---PLPLDEIFSLFNGDNCPSLAGKPK-LFFIQACRGDELDGG 134 (241)
T ss_pred CCCEEEEEEcCCCCCC-------------eEEEecCC---EEEHHHHHHhccccCChhhcCCCc-EEEEeCCCCCCCCCC
Confidence 7899999999999531 79999942 3555667776532 1222345 599999997644321
Q ss_pred hhhhccccccccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHHH
Q 020918 194 EYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLI 272 (320)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v 272 (320)
..... ....-.......+........-.++..|+.++..|+... ..+++|+++|++.|... +..++.+++..|
T Consensus 135 ~~~~~-~~~~~~~~~~~~~~~~~p~~~D~li~ysT~pG~va~r~~-----~~gS~fi~~L~~~l~~~~~~~~l~~ilt~V 208 (241)
T smart00115 135 VPVED-DVDDPPTEFEDDAIYKIPVEADFLAAYSTTPGYVSWRNP-----TRGSWFIQSLCQVLKEYARSLDLLDILTEV 208 (241)
T ss_pred eeccc-ccccccccccccccccCCCcCcEEEEEeCCCCeEeecCC-----CCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 10000 000000000001111111222245667888999998764 35799999999999985 578999999999
Q ss_pred HHHHHhhhhcccccchhhhhhhhcCCCCCccccccc-ccccc
Q 020918 273 YERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSS-GRFEV 313 (320)
Q Consensus 273 ~~~v~~~~~q~~~~~~~~~~~~~~~~~~q~P~~~~~-~~~~~ 313 (320)
++.|.....+ .....|.|+..++ ..-++
T Consensus 209 ~~~V~~~~~~-------------~~~~kQ~p~~~st~L~k~~ 237 (241)
T smart00115 209 NRKVAVKFES-------------VHAKKQMPTIESMTLTKKL 237 (241)
T ss_pred HHHHhhhhcc-------------cCCcEeCCccEeecCccee
Confidence 9999876421 1345788887766 54443
No 5
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=99.56 E-value=1e-13 Score=126.25 Aligned_cols=193 Identities=20% Similarity=0.235 Sum_probs=128.3
Q ss_pred eEEEEEEec-CCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCc-cCC--------------------------
Q 020918 45 RRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEE-KDE-------------------------- 96 (320)
Q Consensus 45 ~~ALlIGi~-y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~-a~~-------------------------- 96 (320)
+|||||+-+ ++.. -+- .+|+..|+++|+ +.|+++++|.++..++ +..
T Consensus 1 ~wAvlvagS~~~~N---YRh-~ad~~~~Y~~l~-~~G~~~~~Iil~~~dd~a~~~~Np~~g~i~~~~~~~n~y~~~~iDY 75 (256)
T PF01650_consen 1 NWAVLVAGSNGWFN---YRH-QADVCHAYQLLK-RNGIPDENIILMMYDDIACNPRNPFPGKIFNDPDGTNVYKGVEIDY 75 (256)
T ss_pred CEEEEEeccCCcee---eeE-ehHHHHHHHHHH-HcCCCCceEEEEecCCccchhhCCCCceEEeCCCcccccCCccccc
Confidence 589999987 4321 111 289999999997 4999999998777554 110
Q ss_pred -CCcccHHHHHHHHHHHHH-------hCCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHH
Q 020918 97 -MYSPTKKNIQKALEWLVN-------DCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSII 168 (320)
Q Consensus 97 -~~~pT~~~I~~al~~l~~-------~~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l 168 (320)
....|.++++..|.--.. +.+++|.|||||+|||...- .-.| + ...++..+|.++|
T Consensus 76 ~g~~v~~~~fl~vL~G~~~~~~~kvl~s~~~D~vfiy~~~HG~~~~------------l~~~-~---~~~l~~~~L~~~L 139 (256)
T PF01650_consen 76 RGEDVTPENFLNVLTGDKSVPSGKVLNSTENDNVFIYFTGHGGPGF------------LKFP-D---GEELTADDLADAL 139 (256)
T ss_pred cccccCHHHHHHHhcCCCCCCccccccCCCCCeEEEEEeccCCCCc------------ccCC-C---cccccHHHHHHHH
Confidence 123344455555441111 46789999999999998752 1113 1 2457788888887
Q ss_pred hcccc--CCceEEEEEeCCCCCCcCcchhhhccccccccCCCCCccccccCCCCcEEEEeecCCCcccccc--cccC-CC
Q 020918 169 VKPLK--EGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDT--SAFT-GN 243 (320)
Q Consensus 169 ~~~~~--~~~~v~~ilDcC~Sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~--~~~~-g~ 243 (320)
..... +-.++++++|+|+||++.+.. ...+ .+++++||.++|.|+.. .... +.
T Consensus 140 ~~m~~~~~y~~lv~~veaC~SGs~~~~L---------------------~~~~-nv~~iTAa~~~e~Sy~~~~~~~~~~~ 197 (256)
T PF01650_consen 140 DKMHEKKRYKKLVFVVEACYSGSFFEGL---------------------LKSP-NVYVITAANADESSYGCYCSDDSIGT 197 (256)
T ss_pred HHHHhhCCcceEEEEEecccccchhhcc---------------------CCCC-CEEEEecCCccccccccccccccccc
Confidence 55422 234689999999999886430 0112 35679999999999866 2111 11
Q ss_pred cccchHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHhhh
Q 020918 244 TMNGVMTYVLAEIVNKHP--GLSYGDLLDLIYERIEEVK 280 (320)
Q Consensus 244 ~~~g~FT~aLl~~L~~~g--~vt~~~L~~~v~~~v~~~~ 280 (320)
--...|++..++-+...+ ..|+.++|+.+++.+....
T Consensus 198 ~l~d~fs~~~m~~~~~~~~~~~Tl~~~f~~v~~~~~~sh 236 (256)
T PF01650_consen 198 YLGDAFSYNWMEDSDSHPLSEETLDDQFEYVKRKTTGSH 236 (256)
T ss_pred EeHHHHHHHhhhhhccCCccccCHHHHHHHHHHhcccch
Confidence 113467888888777754 5899999999999986654
No 6
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=99.53 E-value=4.4e-14 Score=134.62 Aligned_cols=222 Identities=22% Similarity=0.259 Sum_probs=144.2
Q ss_pred CCeEEEEEEec-CCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCc----------------------c-----
Q 020918 43 PSRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEE----------------------K----- 94 (320)
Q Consensus 43 ~~~~ALlIGi~-y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~----------------------a----- 94 (320)
.++.||+||++ |+. ..+|.++.||+..|+.+|+ ..||+.-+-.-+.... +
T Consensus 2 ~~r~alvigns~~~~-aa~l~np~~da~~~a~~L~-~iGfdvy~~~d~~~~~~~~~L~~f~~da~ga~~al~~~aGhg~Q 79 (380)
T COG4249 2 ERRVALVIGNSTYYV-AAPLANPANDAGAMALWLT-AIGFDVYLDTDLPKSGLRRALRYFAEDAEGADVALIYYAGHGLQ 79 (380)
T ss_pred CcceEEEeecCcccc-cccCCCchhhHHHHHHHHH-HcCceeecccccchHHHHhHHHHHHHHHHHHhHHHhhhcccccc
Confidence 47888899988 666 6888888899999998886 6788632112222100 0
Q ss_pred -----------------------------CCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEeeCccccCCCCCCCCCCce
Q 020918 95 -----------------------------DEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFD 145 (320)
Q Consensus 95 -----------------------------~~~~~pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~ 145 (320)
.....|+...|+..|..+.+.....|..++||||||....- +| .
T Consensus 80 ~~~~~~~~pv~~~~~~~~~~~~~~v~~~~~~~~~p~~~~V~~~~lD~~~~~~~~d~~~~~fsG~g~~~~~-d~------~ 152 (380)
T COG4249 80 VDGTNYLLPVDADDVSPTFAVTEAVLIDCRLIPLPARTKVRRVLLDAARDNPPADTILFFFSGHGATPGA-DG------R 152 (380)
T ss_pred ccCccccccchhhhccccchhhhhhhhhhhcccCCchhHHHHHHHHHhhcCchhhhhhheeeccccccCC-CC------c
Confidence 00137889999999999999988899999999999999621 11 1
Q ss_pred eeEEeccCCC-------CCcccHHHHHHHHhccccCCceEEEEEeCCCCCCcCcchhhhccccccccCCCCCccccccCC
Q 020918 146 ETICPVDFLK-------EGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATD 218 (320)
Q Consensus 146 ~~lvp~D~~~-------~~~i~~~~L~~~l~~~~~~~~~v~~ilDcC~Sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (320)
.||+|.|++. ++.+....+...+ .+....+.++.+|+|+++.+...... ...-|... ....+
T Consensus 153 ~~lia~~t~p~~~a~~~~~~~s~~~~~~~~--~~~~~~~ql~~~d~~~~~~~~~~~~~---~~~p~l~~------s~~~~ 221 (380)
T COG4249 153 AYLIAFDTRPGAVAYDGEGGISPYSVAQAL--HLSEPGNQLVDLDACVRGDVFKATAG---QQRPWLAQ------SLARE 221 (380)
T ss_pred eeEEeecCChhhhcccCCCcccHHHHHHHH--HhccCCceeehhhhhcchhhhccccc---ccchHhhh------hhhcc
Confidence 2899999875 2334444444332 12223346799999999977532210 11111110 11122
Q ss_pred CCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHHhhhh--cccccch
Q 020918 219 GGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH--------PGLSYGDLLDLIYERIEEVKK--NDCLVNT 288 (320)
Q Consensus 219 ~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~--------g~vt~~~L~~~v~~~v~~~~~--q~~~~~~ 288 (320)
.+. ..+.+|.+++.++|..+. .+|+||+++++++++. +.++...++.+....+.+... +.++..+
T Consensus 222 ~~~-~~~~~~ap~~~~~e~~~~----g~gv~t~al~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~l~~~ 296 (380)
T COG4249 222 FGF-GILDSCAPDQQSAEAPEL----GHGVFTDALLEGLRGGRAAAEDLDGLRSKDGLLAYDYAETAQLPASADAPLYYG 296 (380)
T ss_pred eee-eeccCCCCCccccccccc----cCceeehhhhhcccccchhcccccchhhhhhhhhhhhhHHhhccccccchhhhh
Confidence 343 458899999999998753 4899999999999992 345556666666666655543 3444444
Q ss_pred h
Q 020918 289 N 289 (320)
Q Consensus 289 ~ 289 (320)
+
T Consensus 297 ~ 297 (380)
T COG4249 297 G 297 (380)
T ss_pred c
Confidence 4
No 7
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=8.2e-07 Score=78.88 Aligned_cols=189 Identities=16% Similarity=0.202 Sum_probs=117.4
Q ss_pred CCCCeEEEEEEec--CCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEec-CCccC----------------------
Q 020918 41 SRPSRRAVLCGVS--YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLT-EEEKD---------------------- 95 (320)
Q Consensus 41 ~~~~~~ALlIGi~--y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~-d~~a~---------------------- 95 (320)
...+.||+||..+ +.... -...+..|+..++ ++|+++.+|.+.. ++.+-
T Consensus 25 ~htnNwAVLv~tSRfwfNYR-----H~aNvl~~YrsvK-rlGipDsqIilmladd~acn~RN~~pg~Vy~n~~~~~nlyg 98 (309)
T KOG1349|consen 25 GHTNNWAVLVCTSRFWFNYR-----HVANVLSVYRSVK-RLGIPDSQIILMLADDMACNSRNPRPGTVYNNENHALNLYG 98 (309)
T ss_pred hccCceEEEEecchhhhhHH-----HHHHHHHHHHHHH-HcCCCcccEEEEeccccccccCCCCCcceeccccccccccC
Confidence 3678999999998 33321 3466778888886 7999999877544 43320
Q ss_pred -------CCCcccHHHHHHHHHHH---------HHhCCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcc
Q 020918 96 -------EMYSPTKKNIQKALEWL---------VNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMI 159 (320)
Q Consensus 96 -------~~~~pT~~~I~~al~~l---------~~~~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i 159 (320)
...-.|.+++...|..- ......+..++||..|||.-. +|--.|+ ..+
T Consensus 99 d~vevdyrgyevtvEnflr~LTgR~~~~tprSKrlltDe~SNIlIYmtGHGgd~-------------FlKFqd~---eel 162 (309)
T KOG1349|consen 99 DDVEVDYRGYEVTVENFLRVLTGRHPNNTPRSKRLLTDEGSNILIYLTGHGGDG-------------FLKFQDA---EEL 162 (309)
T ss_pred CcceeecccchhHHHHHHHHHcCCCCCCCchhhhhcccCCCcEEEEEccCCCcc-------------ceecccH---HHh
Confidence 01233455555555320 001345689999999999742 5656664 235
Q ss_pred cHHHHHHHHhccc--cCCceEEEEEeCCCCCCcCcchhhhccccccccCCCCCccccccCCCCcEEEEeecCCCcccccc
Q 020918 160 IDNDINSIIVKPL--KEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDT 237 (320)
Q Consensus 160 ~~~~L~~~l~~~~--~~~~~v~~ilDcC~Sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~ 237 (320)
+..+|...+.+.. ++--.+++++|+|.+.++.+-- .++ +++.+++|.-+|.|+..
T Consensus 163 ts~dLadai~qm~e~~Ryneil~miDTCQaasly~~~----------------------~sP-NVLav~SS~~ge~SySh 219 (309)
T KOG1349|consen 163 TSDDLADAIQQMWEKKRYNEILFMIDTCQAASLYERF----------------------YSP-NVLAVASSLVGEPSYSH 219 (309)
T ss_pred hhHHHHHHHHHHHHhhhhceEEEEeeccchHHHHHhh----------------------cCC-CeEEEeecccCCccccc
Confidence 6666665554432 2334689999999998664211 123 36778899999998754
Q ss_pred cccC--CCcccchHHHHHHHHHhcC-C--CCCHHHHHHHHHH
Q 020918 238 SAFT--GNTMNGVMTYVLAEIVNKH-P--GLSYGDLLDLIYE 274 (320)
Q Consensus 238 ~~~~--g~~~~g~FT~aLl~~L~~~-g--~vt~~~L~~~v~~ 274 (320)
-.-. |-.--.-|||+.++-|.+. + ..|+++|++..-.
T Consensus 220 ~~d~~Igv~vIDrftyy~l~flek~~~~~~~~l~dl~~s~~~ 261 (309)
T KOG1349|consen 220 HSDSDIGVYVIDRFTYYTLEFLEKGIGAKNRTLQDLFDSCPK 261 (309)
T ss_pred CCCcccceeeeccchHHHHHHHHhcccchhhhHHHHHHhCCh
Confidence 3110 1011234999999999884 2 3468888765543
No 8
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.7e-05 Score=71.00 Aligned_cols=188 Identities=16% Similarity=0.253 Sum_probs=118.6
Q ss_pred CCCCeEEEEEEec--CCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEec-CCcc---------------C-------
Q 020918 41 SRPSRRAVLCGVS--YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLT-EEEK---------------D------- 95 (320)
Q Consensus 41 ~~~~~~ALlIGi~--y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~-d~~a---------------~------- 95 (320)
.....||++|..+ ++.. + -...+..|+..++ ++|+++.+|.+.. +.++ +
T Consensus 25 t~tnNwAvLlstSRfwfNY----R-HmANVl~~Yr~vk-rlGipDsQIilm~~dd~acnsRnlfpgsvf~N~Dra~dlyg 98 (382)
T COG5206 25 TNTNNWAVLLSTSRFWFNY----R-HMANVLVFYRVVK-RLGIPDSQIILMSYDDQACNSRNLFPGSVFNNSDRAGDLYG 98 (382)
T ss_pred ccCCceEEEEecccceeeh----h-hhhhHHHHHHHHH-HcCCCcceEEEEechhhhhhhcccCCcccccCcccccceeC
Confidence 3457999999997 3331 1 1256778999996 7999998877544 3321 0
Q ss_pred -------CCCcccHHHHHHHHHHHHH---------hCCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcc
Q 020918 96 -------EMYSPTKKNIQKALEWLVN---------DCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMI 159 (320)
Q Consensus 96 -------~~~~pT~~~I~~al~~l~~---------~~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i 159 (320)
....||.+.+.+.|....- ...+...+|||..|||.-. +|--.|+ ..+
T Consensus 99 e~~eidY~gyevTve~firLLt~r~~en~p~sKrlltdE~SNIfIYmtGHGgd~-------------FlKFqda---eem 162 (382)
T COG5206 99 EDSEIDYSGYEVTVEVFIRLLTARSGENHPKSKRLLTDESSNIFIYMTGHGGDA-------------FLKFQDA---EEM 162 (382)
T ss_pred cccccccccccchHHHHHHHHHhhccCCChhhhhhcccccCcEEEEEccCCCcc-------------ceecccH---HHh
Confidence 1246777777766653321 1345678999999999742 4555553 235
Q ss_pred cHHHHHHHHhcccc--CCceEEEEEeCCCCCCcCcchhhhccccccccCCCCCccccccCCCCcEEEEeecCCCcccccc
Q 020918 160 IDNDINSIIVKPLK--EGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDT 237 (320)
Q Consensus 160 ~~~~L~~~l~~~~~--~~~~v~~ilDcC~Sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~ 237 (320)
+.++|...+.+... +--++++++|+|.+.++.+-.+ ++ +++++.+|.-+|.|+..
T Consensus 163 tseDladai~ql~~~kRyNeIlfmiDTCQAnaly~k~y----------------------sP-NvLavgsSeig~ssySh 219 (382)
T COG5206 163 TSEDLADAISQLAAKKRYNEILFMIDTCQANALYDKSY----------------------SP-NVLAVGSSEIGQSSYSH 219 (382)
T ss_pred hhHHHHHHHHHHHHhhhhceEEEEeeccccchhhhhcc----------------------CC-ceEEEeccccCCccccc
Confidence 55666655443222 2335899999999986653221 12 35667788888888754
Q ss_pred ccc--CCCcccchHHHHHHHHHhcC---CCCCHHHHHHHHH
Q 020918 238 SAF--TGNTMNGVMTYVLAEIVNKH---PGLSYGDLLDLIY 273 (320)
Q Consensus 238 ~~~--~g~~~~g~FT~aLl~~L~~~---g~vt~~~L~~~v~ 273 (320)
-.- -|-..-.-|||++++-|..- ..+|+++|++...
T Consensus 220 hsd~~IgvaVIDrFty~~l~fle~id~~skltlqDL~~s~n 260 (382)
T COG5206 220 HSDSLIGVAVIDRFTYFFLKFLEKIDIGSKLTLQDLLASLN 260 (382)
T ss_pred cchhhhhHHHhhcchHHHHHHHhhcCcCCeeEHHHHHHhcC
Confidence 210 01011234999999999883 4799999998765
No 9
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=6e-05 Score=70.37 Aligned_cols=130 Identities=23% Similarity=0.316 Sum_probs=86.9
Q ss_pred CCCCCeEEEEEEec--CCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCc-cC---------------------
Q 020918 40 SSRPSRRAVLCGVS--YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEE-KD--------------------- 95 (320)
Q Consensus 40 ~~~~~~~ALlIGi~--y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~-a~--------------------- 95 (320)
...+++||+||+=+ |++... ..|+---+++|+ +.|.+++||+++.=++ |.
T Consensus 41 ddggt~waVLVAGSngyyNYRH-----QADvcHAYqiLr-kgGikeEnIvv~MYDDIA~~~~NPrpG~iiN~P~G~DvY~ 114 (477)
T KOG1348|consen 41 DDGGTRWAVLVAGSNGYYNYRH-----QADVCHAYQILR-KGGIKEENIVVMMYDDIANNEENPRPGVIINRPNGKDVYQ 114 (477)
T ss_pred ccCceeEEEEEecCCcccchhh-----hhhHHHHHHHHH-hcCCCchhEEEEEehhhhcCCCCCCCceeecCCCchhhhc
Confidence 34469999888654 766322 378888899996 6899999998775332 11
Q ss_pred ------CCCcccHHHHHHHHHHH---HH-------hCCCCCEEEEEEeeCccccCCCCCCCCCCceeeEE-eccCCCCCc
Q 020918 96 ------EMYSPTKKNIQKALEWL---VN-------DCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETIC-PVDFLKEGM 158 (320)
Q Consensus 96 ------~~~~pT~~~I~~al~~l---~~-------~~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lv-p~D~~~~~~ 158 (320)
.....|.+|+++.|.-= ++ ...|+|.+||||+-||...- |. |. ...
T Consensus 115 GvpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pGv-------------l~mP~----~~~ 177 (477)
T KOG1348|consen 115 GVPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPGV-------------LGMPT----SPD 177 (477)
T ss_pred CCCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCce-------------EecCC----Ccc
Confidence 02345777888777421 11 25789999999999998631 11 21 123
Q ss_pred ccHHHHHHHHhccc--cCCceEEEEEeCCCCCCcCc
Q 020918 159 IIDNDINSIIVKPL--KEGVTLHAIVDACHSGTILD 192 (320)
Q Consensus 159 i~~~~L~~~l~~~~--~~~~~v~~ilDcC~Sg~~~~ 192 (320)
+...+|.+.|.... .+-.++++-+.||-||++..
T Consensus 178 l~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfe 213 (477)
T KOG1348|consen 178 LYAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFE 213 (477)
T ss_pred hhHHHHHHHHHHHHhccchheEEEEeeeccCcchhh
Confidence 55566766665432 33457889999999998864
No 10
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=98.03 E-value=3.9e-05 Score=64.61 Aligned_cols=104 Identities=17% Similarity=0.291 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHhc-CCCc-ccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEeeCccccCCCCCCCCC
Q 020918 65 INDVRNMRDLLINSF-KFQE-EGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETD 142 (320)
Q Consensus 65 ~~Da~~m~~~L~~~~-Gf~~-~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~~~~~g~~~~ 142 (320)
..-.+.+.+.|+.++ .+.. .......| ||.++++..+..+.+.++. +.++|+|-|||...+..+|
T Consensus 43 ~~~~~~I~~~l~~qY~~~~~~~~~~~~~d--------pt~e~~~~~~~~~R~~a~~-~RvLFHYnGhGvP~Pt~~G---- 109 (154)
T PF14538_consen 43 SKASEEIGKNLQSQYESWQPRARYKQSLD--------PTVEDLKRLCQSLRRNAKD-ERVLFHYNGHGVPRPTENG---- 109 (154)
T ss_pred hhHHHHHHHHHHHHHHHhCccCcEEEecC--------CCHHHHHHHHHHHHhhCCC-ceEEEEECCCCCCCCCCCC----
Confidence 455666777776543 3332 23455555 7999999999999888754 9999999999999754332
Q ss_pred CceeeEEeccCCCCC--cccHHHHHHHHhccccCCceEEEEEeCCCCCCcC
Q 020918 143 GFDETICPVDFLKEG--MIIDNDINSIIVKPLKEGVTLHAIVDACHSGTIL 191 (320)
Q Consensus 143 g~~~~lvp~D~~~~~--~i~~~~L~~~l~~~~~~~~~v~~ilDcC~Sg~~~ 191 (320)
-+.-.|-..+. .++-.+|..++- .-.++|+||.++|.+.
T Consensus 110 ----eIw~f~~~~tqyip~si~dL~~~lg------~Psi~V~DC~~AG~il 150 (154)
T PF14538_consen 110 ----EIWVFNKNYTQYIPLSIYDLQSWLG------SPSIYVFDCSNAGSIL 150 (154)
T ss_pred ----eEEEEcCCCCcceEEEHHHHHHhcC------CCEEEEEECCcHHHHH
Confidence 13333322222 355567777652 2246999999999664
No 11
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=97.92 E-value=4.2e-06 Score=80.27 Aligned_cols=169 Identities=18% Similarity=0.261 Sum_probs=106.6
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCC--CcccH-HHHHHHHhcccc--CC
Q 020918 101 TKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKE--GMIID-NDINSIIVKPLK--EG 175 (320)
Q Consensus 101 T~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~--~~i~~-~~L~~~l~~~~~--~~ 175 (320)
..+.++..|..+.+.++.-|+++|||+|||.+..+. +|++|.|+.-. ..... .-+........+ ..
T Consensus 48 ~~~~~~~~L~~f~~da~ga~~al~~~aGhg~Q~~~~---------~~~~pv~~~~~~~~~~~~~~v~~~~~~~~~p~~~~ 118 (380)
T COG4249 48 PKSGLRRALRYFAEDAEGADVALIYYAGHGLQVDGT---------NYLLPVDADDVSPTFAVTEAVLIDCRLIPLPARTK 118 (380)
T ss_pred chHHHHhHHHHHHHHHHHHhHHHhhhccccccccCc---------cccccchhhhccccchhhhhhhhhhhcccCCchhH
Confidence 566888899999999998899999999999988642 48999997532 11000 001111111222 23
Q ss_pred ceEEEEEeCCCCCCcCcchhhhccccccccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHH
Q 020918 176 VTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAE 255 (320)
Q Consensus 176 ~~v~~ilDcC~Sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~ 255 (320)
++ .+++|+|+.....+....+ +.+. +......+..+++.+..++++.+++.. ...+.|+-++..
T Consensus 119 V~-~~~lD~~~~~~~~d~~~~~------fsG~----g~~~~~d~~~~lia~~t~p~~~a~~~~-----~~~s~~~~~~~~ 182 (380)
T COG4249 119 VR-RVLLDAARDNPPADTILFF------FSGH----GATPGADGRAYLIAFDTRPGAVAYDGE-----GGISPYSVAQAL 182 (380)
T ss_pred HH-HHHHHHhhcCchhhhhhhe------eecc----ccccCCCCceeEEeecCChhhhcccCC-----CcccHHHHHHHH
Confidence 33 3899999987764322111 1000 001112222356667788888887653 458999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHhhh--hcccccchhhhhhhh
Q 020918 256 IVNKHPGLSYGDLLDLIYERIEEVK--KNDCLVNTNFLRRFF 295 (320)
Q Consensus 256 ~L~~~g~vt~~~L~~~v~~~v~~~~--~q~~~~~~~~~~~~~ 295 (320)
.+.+. ...+..+...++..+-... +|+||..++..++..
T Consensus 183 ~~~~~-~~ql~~~d~~~~~~~~~~~~~~~~p~l~~s~~~~~~ 223 (380)
T COG4249 183 HLSEP-GNQLVDLDACVRGDVFKATAGQQRPWLAQSLAREFG 223 (380)
T ss_pred HhccC-CceeehhhhhcchhhhcccccccchHhhhhhhccee
Confidence 99984 4455577777776665543 588988888777544
No 12
>PF12770 CHAT: CHAT domain
Probab=96.76 E-value=0.014 Score=53.58 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=106.3
Q ss_pred EEEEec-CCC------CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCC
Q 020918 48 VLCGVS-YNK------GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGD 120 (320)
Q Consensus 48 LlIGi~-y~~------~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D 120 (320)
|+||.. ... ...+|++....+..+++.+.. .+. .++.... +|.+++++.+ ....
T Consensus 82 l~i~~p~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~-~~~-----~~~~~~~------at~~~l~~~l-------~~~~ 142 (287)
T PF12770_consen 82 LVIGNPDFGGSLIRGAALSPLPGAQREADALAELLGA-GGL-----RVLVGPE------ATKDALLEAL-------ERRG 142 (287)
T ss_pred EEEecCCCcccccccccccCchHHHHHHHHHHHHhcc-cce-----eEeeccC------CCHHHHHhhh-------ccCC
Confidence 888887 332 247899999999999988852 222 2333333 4898888888 3455
Q ss_pred EEEEEEeeCccccCCCCCCCCCCceeeEEeccCCC--CCcccHHHHHHHHhccccCCceEEEEEeCCCCCCcCcchhhhc
Q 020918 121 SLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLK--EGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYN 198 (320)
Q Consensus 121 ~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~--~~~i~~~~L~~~l~~~~~~~~~v~~ilDcC~Sg~~~~~~~~~~ 198 (320)
.-+|||+|||....... ....|+..+... ...++..+|..+ + +.. .+ ++||-+|+|+.......
T Consensus 143 ~~ilH~a~Hg~~~~~~~------~~~~l~l~~~~~~~~~~l~~~~l~~l--~-l~~-~~-lVvLsaC~s~~~~~~~~--- 208 (287)
T PF12770_consen 143 PDILHFAGHGTFDPDPP------DQSGLVLSDESGQEDGLLSAEELAQL--D-LRG-PR-LVVLSACESASGDPSDG--- 208 (287)
T ss_pred CCEEEEEcccccCCCCC------CCCEEEEeccCCCCCcccCHHHHHhh--c-CCC-CC-EEEecCcCCcCCCCCCc---
Confidence 66999999999883211 112566664333 356788888772 2 222 44 59999999994321100
Q ss_pred cccccccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 020918 199 KYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEE 278 (320)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~g~vt~~~L~~~v~~~v~~ 278 (320)
.....+. ......|...|+++- ++..+ .....|+..|.+.|..+ .+..+-+...+..+..
T Consensus 209 ~~~~~l~--------~~~l~aG~~~Vi~~~------w~V~d----~~a~~f~~~fY~~L~~g--~~~~~Al~~Ar~~l~~ 268 (287)
T PF12770_consen 209 DEVLGLA--------RAFLQAGAPAVIGML------WPVPD----QAAARFMRRFYRALLQG--QSVAEALRQARRALRR 268 (287)
T ss_pred hHHHHHH--------HHHHHcCCCEEEecc------cCcch----HHHHHHHHHHHHhhhcC--CCHHHHHHHHHHHHHh
Confidence 0000000 011112222334421 11110 23578999999999883 5777888888888876
Q ss_pred hh
Q 020918 279 VK 280 (320)
Q Consensus 279 ~~ 280 (320)
..
T Consensus 269 ~~ 270 (287)
T PF12770_consen 269 DS 270 (287)
T ss_pred cC
Confidence 54
No 13
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.89 E-value=0.055 Score=57.30 Aligned_cols=165 Identities=17% Similarity=0.212 Sum_probs=90.2
Q ss_pred ChHHHHHHHHHHHHHhcC-CCc-ccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEeeCccccCCCCCCC
Q 020918 63 GTINDVRNMRDLLINSFK-FQE-EGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDE 140 (320)
Q Consensus 63 ~~~~Da~~m~~~L~~~~G-f~~-~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~~~~~g~~ 140 (320)
++..-++++.+-|+.++. +.+ .+-.+..| ||.+++++.-..+.+.+ ++|.++|+|-|||...+..+|.
T Consensus 137 ~~~KA~e~IG~nlq~qYE~wqprtRYK~~lD--------P~vddVrKlc~slRr~a-k~eRvLFHYNGHGVPkPT~nGE- 206 (1387)
T KOG1517|consen 137 GPPKALEAIGKNLQRQYERWQPRTRYKVCLD--------PTVDDVRKLCTSLRRNA-KEERVLFHYNGHGVPKPTANGE- 206 (1387)
T ss_pred CChHHHHHHHHHHHHHHHhhChhhhhhhccC--------CcHHHHHHHHHHHhhhc-CCceEEEEecCCCCCCCCCCCc-
Confidence 344667777777765542 322 23334444 79999998888877654 5799999999999998765441
Q ss_pred CCCceeeEEeccCCCCCc--ccHHHHHHHHhccccCCceEEEEEeCCCCCCcCcchhhhccccccccCCCCCcccc--cc
Q 020918 141 TDGFDETICPVDFLKEGM--IIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSGAR--KA 216 (320)
Q Consensus 141 ~~g~~~~lvp~D~~~~~~--i~~~~L~~~l~~~~~~~~~v~~ilDcC~Sg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 216 (320)
-||- +-.-+.. ++-.+|..||.. . .+.|.||-.++.+...-..+..+...-.++....... ..
T Consensus 207 ------IWVF-NK~fTQYIPlsi~dLqsWl~a-----P-~IyVydcssA~~Il~nf~~fae~~~~~~~~~~~~~~~~ps~ 273 (1387)
T KOG1517|consen 207 ------IWVF-NKSFTQYIPLSIFDLQSWLGA-----P-TIYVYDCSSAENILVNFNRFAEQRDKMTDADQANALAFPSG 273 (1387)
T ss_pred ------EEEE-ecCcceeecccHHHHHhhhcC-----C-eEEEEeccchHHHHHHHHHHHHhhhccccccccccccCCCC
Confidence 2322 1111122 234567777632 2 3699998777755422222221110000100000000 01
Q ss_pred CC-CCcEEEEeecCCCcccccccccCCCcccchHHHHHH
Q 020918 217 TD-GGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLA 254 (320)
Q Consensus 217 ~~-~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl 254 (320)
.+ -..++.|+||.++|.=.-.+++ ..-+||..|.
T Consensus 274 ~~~y~dCi~LAaC~~~e~LPms~~l----PADlFTsCLT 308 (1387)
T KOG1517|consen 274 TSRYKDCIHLAACDAHETLPMSPEL----PADLFTSCLT 308 (1387)
T ss_pred CcchhhhheeccCCcccccCCCCCc----cHHHHhhhhc
Confidence 11 1347889999999876433332 3567776543
No 14
>PF12070 DUF3550: Protein of unknown function (DUF3550/UPF0682); InterPro: IPR022709 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 249 to 606 amino acids in length.
Probab=85.15 E-value=8.5 Score=38.57 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=32.7
Q ss_pred CcccHHHHHHHHHHHHHhCCCCCEEEEEEeeCcccc
Q 020918 98 YSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQ 133 (320)
Q Consensus 98 ~~pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~ 133 (320)
..||-..+..-|....+..-++-.+++|.|.+|...
T Consensus 292 YrPT~sqll~~LAt~~kELP~n~~lLlYlSA~G~~~ 327 (513)
T PF12070_consen 292 YRPTFSQLLAFLATAFKELPPNGALLLYLSADGCFS 327 (513)
T ss_pred ecCCHHHHHHHHHHHHHhcCCCceEEEEEeccCccc
Confidence 589999999999999999999999999999999754
No 15
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.12 E-value=3 Score=40.74 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=68.8
Q ss_pred CCCCCeEEEEEEecC-----CCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHH
Q 020918 40 SSRPSRRAVLCGVSY-----NKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVN 114 (320)
Q Consensus 40 ~~~~~~~ALlIGi~y-----~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~ 114 (320)
.+..+-.++.-|..- .....+|+++...++.+++.+... .++.+.+. |..+....++..
T Consensus 208 ~~~~~l~vl~~g~s~~~~~~~~~~~~Lp~~~~Ev~~Ia~~~~~~--------~~ll~q~F------t~~~~~~~~~~~-- 271 (420)
T COG4995 208 LRQQNLKVLAAGLSEPSGPARTGFDALPFAALEVETIAAIFPPQ--------KLLLNQAF------TAANLAQEIDTK-- 271 (420)
T ss_pred ccccchhHHHhccCcccccccccccccchHHHHHHHHHHhhhhH--------Hhhhcccc------hhhHHhhhhhcC--
Confidence 344556666666652 223688999999999999887421 22333321 333333333222
Q ss_pred hCCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc--cccCCceEEEEEeCCCCCCc
Q 020918 115 DCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK--PLKEGVTLHAIVDACHSGTI 190 (320)
Q Consensus 115 ~~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~--~~~~~~~v~~ilDcC~Sg~~ 190 (320)
+.=+++|++||.-..+. +.+.+++.+|.... +. ++..++.. .....++ ++||-||.+|..
T Consensus 272 -----~~~vvHlATHg~f~s~~------p~~S~l~~~~~~~~--~~--~~~~~~~~~~~~~~~vd-LvVLSACqTa~g 333 (420)
T COG4995 272 -----PYSVVHLATHGQFSSGN------PEDSFLLLWDGPIN--VT--ELDILLRNRNNNLLPVE-LVVLSACQTALG 333 (420)
T ss_pred -----CCceEEEeccccccCCC------cccceeeecCCCCc--cc--HHHHHHHhcccCCCCee-eEEEecchhccC
Confidence 56689999999887632 22347888885432 21 22222211 1123455 599999999863
No 16
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=74.67 E-value=20 Score=34.70 Aligned_cols=80 Identities=19% Similarity=0.308 Sum_probs=50.8
Q ss_pred CCCeEEEEEEecCCCCCCCCCChHHHHHHHHHHHHH--------hcCCC--cccEEEecCCccCCCCcccHHHHHHH--H
Q 020918 42 RPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLIN--------SFKFQ--EEGIIVLTEEEKDEMYSPTKKNIQKA--L 109 (320)
Q Consensus 42 ~~~~~ALlIGi~y~~~~~~L~~~~~Da~~m~~~L~~--------~~Gf~--~~~I~~L~d~~a~~~~~pT~~~I~~a--l 109 (320)
.++.++++||.. +++..=|+.+++.++. .+|+. -.+|.++.... ..|+...+... +
T Consensus 35 ~p~gr~~Vig~G--------KAs~~MA~a~~~~~~~~~~GvVVt~~g~~~~~~~ieViea~H----PvPDe~s~~asrrl 102 (422)
T COG2379 35 PPKGRTIVIGAG--------KASAEMARAFEEHWKGPLAGVVVTPYGYGGPCPRIEVIEAGH----PVPDEASLKASRRL 102 (422)
T ss_pred CCCCceEEEecc--------hhHHHHHHHHHHHhccccCceEeccCccCCCCCceeEEeCCC----CCCCchhHHHHHHH
Confidence 467789999998 4444545555555521 12322 23566665543 35666666644 3
Q ss_pred HHHHHhCCCCCEEEEEEeeCcccc
Q 020918 110 EWLVNDCRKGDSLVFYFSGHGLRQ 133 (320)
Q Consensus 110 ~~l~~~~~~~D~l~~YfSGHG~~~ 133 (320)
-++++..+++|.|++.+||-|.-.
T Consensus 103 L~~v~~l~e~D~Vi~LISGGGSaL 126 (422)
T COG2379 103 LELVSGLTEDDLVIVLISGGGSAL 126 (422)
T ss_pred HHHhcCCCCCcEEEEEEeCCchhh
Confidence 455667889999999999988653
No 17
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=58.89 E-value=23 Score=32.02 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=42.4
Q ss_pred CCeEEEEEEecCCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCc-c----------CCCCcccHHHHHHH--H
Q 020918 43 PSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEE-K----------DEMYSPTKKNIQKA--L 109 (320)
Q Consensus 43 ~~~~ALlIGi~y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~-a----------~~~~~pT~~~I~~a--l 109 (320)
..++..+||+. ++ +..|++.+.+.+|-....-.+.+... . .....|+...+..+ +
T Consensus 39 ~~~~i~vvg~G--------KA----a~~MA~a~~~~lg~~i~~G~vv~~~g~~~~~~~i~v~~~~HP~Pd~~s~~aa~~i 106 (238)
T PF13660_consen 39 KYGRIYVVGFG--------KA----AAPMAEAAEEILGDRIVGGLVVVPYGHESPLPRIEVLEGGHPLPDENSVRAARRI 106 (238)
T ss_dssp --SSEEEEEES--------TT----HHHHHHHHHHHCGGCEEEEEEEEETT-----TTSEEEEE-SSS--HHHHHHHHHH
T ss_pred CCCCEEEEEeC--------HH----HHHHHHHHHHHhcccccCceEEeCCcccCCCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 45677888888 33 34566666544443211111122111 0 12457888888854 6
Q ss_pred HHHHHhCCCCCEEEEEEeeCccc
Q 020918 110 EWLVNDCRKGDSLVFYFSGHGLR 132 (320)
Q Consensus 110 ~~l~~~~~~~D~l~~YfSGHG~~ 132 (320)
.++++.++++|.++|-.||=|.-
T Consensus 107 l~~~~~~~~~dlvl~LiSGGgSA 129 (238)
T PF13660_consen 107 LELARELTEDDLVLVLISGGGSA 129 (238)
T ss_dssp HHHHCC--TTSEEEEEE-TTHHH
T ss_pred HHHHhcCCCCCeEEEEecCChHH
Confidence 68888899999999999996654
No 18
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=58.32 E-value=57 Score=27.95 Aligned_cols=57 Identities=12% Similarity=0.308 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEeeCccc
Q 020918 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLR 132 (320)
Q Consensus 68 a~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~ 132 (320)
-+..-+-|.+..||..-+++.+.... |.++++++.+.+- -.-.+|.+-++.+|||.=
T Consensus 52 ~~~eid~l~~e~Gyk~~Dvvsv~~~~------pk~del~akF~~E--H~H~d~EvRy~vaG~GiF 108 (181)
T COG1791 52 YETEIDRLIRERGYKNRDVVSVSPSN------PKLDELRAKFLQE--HLHTDDEVRYFVAGEGIF 108 (181)
T ss_pred HHHHHHHHHHhhCCceeeEEEeCCCC------ccHHHHHHHHHHH--hccCCceEEEEEecceEE
Confidence 33444556667899877777777654 6777777766432 245789999999999964
No 19
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=57.36 E-value=35 Score=25.41 Aligned_cols=47 Identities=19% Similarity=0.409 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEeeCcccc
Q 020918 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQ 133 (320)
Q Consensus 66 ~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~ 133 (320)
.-.+.+.+.|.+ .|+. |. .|+.+.+..+|..|++.-+ ||++|+|...
T Consensus 30 at~E~l~~~L~~--~yp~--i~-----------~Ps~e~l~~~L~~Li~erk------IY~tg~GYfi 76 (80)
T PF10264_consen 30 ATQETLREHLRK--HYPG--IA-----------IPSQEVLYNTLGTLIKERK------IYHTGEGYFI 76 (80)
T ss_pred chHHHHHHHHHH--hCCC--CC-----------CCCHHHHHHHHHHHHHcCc------eeeCCCceEe
Confidence 345566677764 4552 22 2799999999999988643 8999999753
No 20
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=54.39 E-value=28 Score=33.45 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=38.9
Q ss_pred EEEEEeCCCCCCcCcchh-hhccccccccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHH
Q 020918 178 LHAIVDACHSGTILDLEY-VYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEI 256 (320)
Q Consensus 178 v~~ilDcC~Sg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~ 256 (320)
-+++.-||.+|.+..... .+. +.|. ....+|.+.++++++. ++.. .+-.|...|.+.
T Consensus 273 p~~~s~~C~~g~fd~~~~~sl~---E~~v---------~~~~gGAia~ig~s~~---~~~~-------~~~~~~~~~~~~ 330 (378)
T PF01364_consen 273 PVVISAACYTGNFDDPDNPSLG---EALV---------LNPNGGAIAFIGSSRV---SYAS-------PNDRLNRGFYEA 330 (378)
T ss_dssp -EEEEESSSTT-TTSSS---HH---HHHH---------TTEE-S-SEEEEESS-----SSH-------HHHHHHHHHTT-
T ss_pred eEEEEeECCCcCCCCCCCCcHH---HHhe---------ECCCCcEEEEEeccee---Eecc-------hHHHHHHHHHHH
Confidence 358888999998842211 111 0010 0122444556766653 2211 245677777777
Q ss_pred HhcCCCCCHHHHHHHHHHHHHh
Q 020918 257 VNKHPGLSYGDLLDLIYERIEE 278 (320)
Q Consensus 257 L~~~g~vt~~~L~~~v~~~v~~ 278 (320)
|-.....++.+++...+..+-.
T Consensus 331 l~~~~~~~lG~a~~~a~~~~~~ 352 (378)
T PF01364_consen 331 LFNSNMDTLGEALRQAKNYYLS 352 (378)
T ss_dssp STT----BHHHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHH
Confidence 7665545888888887776654
No 21
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=48.52 E-value=52 Score=30.52 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhccccCCceEEE
Q 020918 101 TKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHA 180 (320)
Q Consensus 101 T~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~~~~~~~v~~ 180 (320)
..+.|.++|.+++.. +....++.+.+|-|..... . -.+|.+.+. ......+|-+
T Consensus 119 ~l~~i~~~Ln~~~~~-~~v~i~~e~~agegs~~g~----------------~--------F~~L~eii~-~~~~~~~igv 172 (280)
T COG0648 119 GLNRIAEALNELLEE-EGVIILLENTAGEGSGKGT----------------Q--------FGELAEIID-LIEEKERIGV 172 (280)
T ss_pred HHHHHHHHHHHHhhc-cCCeEEEEEeccccCcccc----------------c--------hhhHHHHHH-hhcccCceEE
Confidence 456677777777764 3456778889987766531 1 123444432 2223335889
Q ss_pred EEeCCCCCC
Q 020918 181 IVDACHSGT 189 (320)
Q Consensus 181 ilDcC~Sg~ 189 (320)
.||.||.-+
T Consensus 173 CiDtcH~~A 181 (280)
T COG0648 173 CIDTCHAFA 181 (280)
T ss_pred EEEchhhhh
Confidence 999999743
No 22
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=45.73 E-value=2e+02 Score=26.29 Aligned_cols=117 Identities=12% Similarity=0.133 Sum_probs=63.4
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEeeCccccCCCC
Q 020918 58 KFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFN 137 (320)
Q Consensus 58 ~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~~~~~ 137 (320)
+.+|..+..-.+..++.+.+-+|-+ ++.++++. +...+...+..+ ++++|.+++---+|........
T Consensus 51 ~d~l~~~~g~i~~~~~~~A~~~ga~--~~~~~~~G--------st~a~~~~l~al---~~~gd~Vlv~~~~h~s~~~~~~ 117 (294)
T cd00615 51 LDDLLDPTGPIKEAQELAARAFGAK--HTFFLVNG--------TSSSNKAVILAV---CGPGDKILIDRNCHKSVINGLV 117 (294)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCC--CEEEEcCc--------HHHHHHHHHHHc---CCCCCEEEEeCCchHHHHHHHH
Confidence 6677777776777777776556654 56666764 455565555555 5689999998888865432110
Q ss_pred CCCCCCceeeEEeccCCC----CCcccHHHHHHHHhccccCCceEEEEEeCCCCCCcCc
Q 020918 138 NDETDGFDETICPVDFLK----EGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILD 192 (320)
Q Consensus 138 g~~~~g~~~~lvp~D~~~----~~~i~~~~L~~~l~~~~~~~~~v~~ilDcC~Sg~~~~ 192 (320)
..|....+++.+... .+.+..++|.+.+.+ ....+++++-..-+.|...+
T Consensus 118 ---~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~--~~~~k~v~l~~p~~~G~~~d 171 (294)
T cd00615 118 ---LSGAVPVYLKPERNPYYGIAGGIPPETFKKALIE--HPDAKAAVITNPTYYGICYN 171 (294)
T ss_pred ---HCCCEEEEecCccCcccCcCCCCCHHHHHHHHHh--CCCceEEEEECCCCCCEecC
Confidence 012222333333221 124566667665532 12344444443334454444
No 23
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=42.68 E-value=12 Score=16.06 Aligned_cols=6 Identities=50% Similarity=1.220 Sum_probs=4.7
Q ss_pred cccCCC
Q 020918 2 QICPRG 7 (320)
Q Consensus 2 ~~~~~~ 7 (320)
+.||+|
T Consensus 4 ~nCP~G 9 (9)
T PF00220_consen 4 RNCPIG 9 (9)
T ss_pred ccCCCC
Confidence 679986
No 24
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=38.51 E-value=86 Score=26.15 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHHHhcC----CCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEE
Q 020918 63 GTINDVRNMRDLLINSFK----FQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVF 124 (320)
Q Consensus 63 ~~~~Da~~m~~~L~~~~G----f~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~ 124 (320)
|-..=-+++++++.+.+| +++++|.+... ....+...+.-| +.++|.+++
T Consensus 93 G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~G---------a~~al~~l~~~l---~dpGD~VlV 146 (153)
T PLN02994 93 GLANFRKAIANFMAEARGGRVKFDADMIVLSAG---------ATAANEIIMFCI---ADPGDAFLV 146 (153)
T ss_pred CcHHHHHHHHHHHHHHhCCCCccchhheEEcCC---------HHHHHHHHHHHH---cCCCCEEEE
Confidence 333444667788876666 45667664322 333444433434 458888876
No 25
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=37.98 E-value=1e+02 Score=22.21 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCCcc-cEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCC-CEEEEEEe
Q 020918 66 NDVRNMRDLLINSFKFQEE-GIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKG-DSLVFYFS 127 (320)
Q Consensus 66 ~Da~~m~~~L~~~~Gf~~~-~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~-D~l~~YfS 127 (320)
.....+++.|+ .+|.... .+... + .|.......+..+.+...++ |.+.+|--
T Consensus 14 k~~~kv~k~L~-~~g~~iQ~SVf~~-~--------~~~~~~~~l~~~l~~~i~~~~d~i~i~~l 67 (78)
T PF09827_consen 14 KRRNKVRKILK-SYGTRIQYSVFEG-N--------LTNAELRKLRRELEKLIDPDEDSIRIYPL 67 (78)
T ss_dssp HHHHHHHHHHH-HTTEEEETTEEEE-E--------E-HHHHHHHHHHHHHHSCTTTCEEEEEEE
T ss_pred HHHHHHHHHHH-HhCccccceEEEE-E--------cCHHHHHHHHHHHHhhCCCCCCEEEEEEe
Confidence 66788999996 6774432 34433 3 25555555556666666677 88888754
No 26
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=36.78 E-value=1.4e+02 Score=23.89 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEE
Q 020918 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVF 124 (320)
Q Consensus 68 a~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~ 124 (320)
...++++|+ .+|+......++.| +.+.|.+++.+.+++ .|+++.
T Consensus 21 ~~~l~~~l~-~~G~~v~~~~~v~D---------d~~~i~~~i~~~~~~---~Dlvit 64 (133)
T cd00758 21 GPALEALLE-DLGCEVIYAGVVPD---------DADSIRAALIEASRE---ADLVLT 64 (133)
T ss_pred HHHHHHHHH-HCCCEEEEeeecCC---------CHHHHHHHHHHHHhc---CCEEEE
Confidence 446778885 68987655555655 678899999887654 465443
No 27
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=36.05 E-value=1.3e+02 Score=22.69 Aligned_cols=55 Identities=11% Similarity=0.274 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCcc-cEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEee
Q 020918 67 DVRNMRDLLINSFKFQEE-GIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSG 128 (320)
Q Consensus 67 Da~~m~~~L~~~~Gf~~~-~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~YfSG 128 (320)
-+..+-..|+++++..++ .+.+..|.. -.|+.+.....| .+.-+.+..|++.||+
T Consensus 27 tv~~~~~~lrk~L~l~~~~slflyvnn~----f~p~~d~~~g~L---Y~~~~~dGfLyi~Ys~ 82 (87)
T cd01612 27 SFQAVIDFLRKRLKLKASDSLFLYINNS----FAPSPDENVGNL---YRCFGTNGELIVSYCK 82 (87)
T ss_pred CHHHHHHHHHHHhCCCccCeEEEEECCc----cCCCchhHHHHH---HHhcCCCCEEEEEEeC
Confidence 455677888888887654 477777753 125655444444 3333478999999987
No 28
>PF03415 Peptidase_C11: Clostripain family This family belongs to family C11 of the peptidase classification.; InterPro: IPR005077 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C11 (clostripain family, clan CD). ; PDB: 3UWS_A.
Probab=35.36 E-value=4.3e+02 Score=25.69 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=40.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCC-CCcccHHHHHHHHhccccCCceE
Q 020918 100 PTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLK-EGMIIDNDINSIIVKPLKEGVTL 178 (320)
Q Consensus 100 pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~-~~~i~~~~L~~~l~~~~~~~~~v 178 (320)
.+.+.+.+-|.+..+.. |-+.-.+-+.+||.--..... ....-+..|-.. ...+.-.+|.+.|. ......
T Consensus 78 ~dp~tL~~fi~~~~~~y-PA~~y~LIlw~HG~Gw~~~~~-----~~~rg~~~D~~~~~~~l~i~el~~aL~--~~~~~d- 148 (397)
T PF03415_consen 78 GDPDTLSDFINWAKENY-PADRYGLILWDHGGGWLPASD-----SSTRGIGFDETSGGDYLSIPELAEALE--GGPKFD- 148 (397)
T ss_dssp TSHHHHHHHHHHHHHHS--ECEEEEEEES-B-TT--TTG-----GG---EEEETTE---EE-HHHHHHHS----TT-EE-
T ss_pred CCHHHHHHHHHHHHHhC-CcccEEEEEEECCCCCCcCCC-----CCcceEecCCCChhhcccHHHHHHHHc--CCCCCc-
Confidence 35666667777777654 667888888999975422100 001122333322 23566677777663 122233
Q ss_pred EEEEeCCCCCCc
Q 020918 179 HAIVDACHSGTI 190 (320)
Q Consensus 179 ~~ilDcC~Sg~~ 190 (320)
++.+|+|.=+.+
T Consensus 149 ~I~FDaClM~~v 160 (397)
T PF03415_consen 149 FIGFDACLMGSV 160 (397)
T ss_dssp EEEEESTT--BH
T ss_pred EEEECcccchhH
Confidence 599999998755
No 29
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=34.86 E-value=1.1e+02 Score=24.70 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=34.4
Q ss_pred cEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEeeCccc
Q 020918 85 GIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLR 132 (320)
Q Consensus 85 ~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~ 132 (320)
+|.+|.|......... ..+++++..+++...++|.+-|+..|+...
T Consensus 2 ~vvilvD~S~Sm~g~~--~~~k~al~~~l~~L~~~d~fnii~f~~~~~ 47 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEK--ELVKDALRAILRSLPPGDRFNIIAFGSSVR 47 (155)
T ss_pred eEEEEEeCCCCCCCcH--HHHHHHHHHHHHhCCCCCEEEEEEeCCEee
Confidence 5777777653322222 788889999999999999999999998654
No 30
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=33.37 E-value=51 Score=31.41 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHh--CCCCCEEEEEEeeCccccC
Q 020918 101 TKKNIQKALEWLVND--CRKGDSLVFYFSGHGLRQP 134 (320)
Q Consensus 101 T~~~I~~al~~l~~~--~~~~D~l~~YfSGHG~~~~ 134 (320)
|..+|..+++.-.+. -...-+++|-|||||..+-
T Consensus 384 saHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL 419 (432)
T COG1350 384 SAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDL 419 (432)
T ss_pred chhhHHHHHHHHHhccccCceeEEEEeccCccccch
Confidence 677788888765543 2334699999999999874
No 31
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.85 E-value=55 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCCCEEEEEEee
Q 020918 105 IQKALEWLVNDCRKGDSLVFYFSG 128 (320)
Q Consensus 105 I~~al~~l~~~~~~~D~l~~YfSG 128 (320)
..+.|.+++++.+.++.+|+||.|
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~g 34 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLG 34 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEec
Confidence 456677777777778889999998
No 32
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=32.14 E-value=1.7e+02 Score=23.77 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHH
Q 020918 64 TINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVN 114 (320)
Q Consensus 64 ~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~ 114 (320)
....++.|+++|.+ .|++.+.|.+...... |.+|+......+.+
T Consensus 52 ~~~ea~~~~~~l~~-~gvp~~~I~~e~~s~~------T~ena~~~~~~~~~ 95 (155)
T PF02698_consen 52 GRSEAEAMRDYLIE-LGVPEERIILEPKSTN------TYENARFSKRLLKE 95 (155)
T ss_dssp TS-HHHHHHHHHHH-T---GGGEEEE----S------HHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh-cccchheeEccCCCCC------HHHHHHHHHHHHHh
Confidence 44789999999985 5999888776544332 88888888766653
No 33
>PRK03670 competence damage-inducible protein A; Provisional
Probab=32.14 E-value=1.7e+02 Score=26.61 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEeeCcccc
Q 020918 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQ 133 (320)
Q Consensus 68 a~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~ 133 (320)
+..+++.|. .+|++...+.++.| ..+.|.++|+..+++ ..|++++. -|=|...
T Consensus 22 ~~~la~~L~-~~G~~v~~~~iV~D---------d~~~I~~~l~~a~~~--~~DlVItt-GGlGpt~ 74 (252)
T PRK03670 22 SAFIAQKLT-EKGYWVRRITTVGD---------DVEEIKSVVLEILSR--KPEVLVIS-GGLGPTH 74 (252)
T ss_pred HHHHHHHHH-HCCCEEEEEEEcCC---------CHHHHHHHHHHHhhC--CCCEEEEC-CCccCCC
Confidence 445788886 68998766777766 578899999876542 45765554 4444433
No 34
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=31.28 E-value=1.5e+02 Score=25.77 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=39.5
Q ss_pred CCCeEEEEEEecCCCCCCCCCChHHHHHHHHHHHHH-----hcCCCcccEEEecCCccCCCCcccHHHHHHHH-HHHHHh
Q 020918 42 RPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLIN-----SFKFQEEGIIVLTEEEKDEMYSPTKKNIQKAL-EWLVND 115 (320)
Q Consensus 42 ~~~~~ALlIGi~y~~~~~~L~~~~~Da~~m~~~L~~-----~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al-~~l~~~ 115 (320)
...++.+++|+. +...+|..+..-|.. +.|++ ...+.++........+-....+.+ .++...
T Consensus 39 ~~~~rI~~~G~G---------gSa~~A~~~a~~l~~~~~~~r~gl~---a~~l~~d~~~~ta~and~~~~~~f~~ql~~~ 106 (196)
T PRK10886 39 LNGNKILCCGNG---------TSAANAQHFAASMINRFETERPSLP---AIALNTDNVVLTAIANDRLHDEVYAKQVRAL 106 (196)
T ss_pred HcCCEEEEEECc---------HHHHHHHHHHHHHhccccccCCCcc---eEEecCcHHHHHHHhccccHHHHHHHHHHHc
Confidence 356889999998 233577777766643 34565 343443210000000011122333 234445
Q ss_pred CCCCCEEEEEEeeCcc
Q 020918 116 CRKGDSLVFYFSGHGL 131 (320)
Q Consensus 116 ~~~~D~l~~YfSGHG~ 131 (320)
.+++|++++ +|+-|.
T Consensus 107 ~~~gDvli~-iS~SG~ 121 (196)
T PRK10886 107 GHAGDVLLA-ISTRGN 121 (196)
T ss_pred CCCCCEEEE-EeCCCC
Confidence 788888876 666443
No 35
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.20 E-value=39 Score=28.92 Aligned_cols=20 Identities=40% Similarity=0.999 Sum_probs=16.3
Q ss_pred CCCCCEEEEEEeeCccccCC
Q 020918 116 CRKGDSLVFYFSGHGLRQPD 135 (320)
Q Consensus 116 ~~~~D~l~~YfSGHG~~~~~ 135 (320)
++.+|.+++||+|-|...+.
T Consensus 7 ~~qgd~LIvyFaGwgtpps~ 26 (214)
T COG2830 7 CKQGDHLIVYFAGWGTPPSA 26 (214)
T ss_pred ecCCCEEEEEEecCCCCHHH
Confidence 35789999999999987543
No 36
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=31.04 E-value=1.4e+02 Score=24.09 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEE
Q 020918 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLV 123 (320)
Q Consensus 66 ~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~ 123 (320)
.....+.++|. .+|+......++.| +.+.|.++|...+++. |+++
T Consensus 17 ~n~~~l~~~l~-~~G~~v~~~~~v~D---------d~~~i~~~l~~~~~~~---D~Vi 61 (144)
T PF00994_consen 17 SNGPFLAALLE-ELGIEVIRYGIVPD---------DPDAIKEALRRALDRA---DLVI 61 (144)
T ss_dssp HHHHHHHHHHH-HTTEEEEEEEEEES---------SHHHHHHHHHHHHHTT---SEEE
T ss_pred hHHHHHHHHHH-HcCCeeeEEEEECC---------CHHHHHHHHHhhhccC---CEEE
Confidence 45567888886 68998767777777 6889999997776654 5544
No 37
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=30.39 E-value=1.7e+02 Score=27.76 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCCcc-cEEEecCCccCCCCcccHHHHHHHHHHHHHh-----CC-CCCEEEEEEeeCccccCC
Q 020918 67 DVRNMRDLLINSFKFQEE-GIIVLTEEEKDEMYSPTKKNIQKALEWLVND-----CR-KGDSLVFYFSGHGLRQPD 135 (320)
Q Consensus 67 Da~~m~~~L~~~~Gf~~~-~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~-----~~-~~D~l~~YfSGHG~~~~~ 135 (320)
..+.+...++ ..|+..+ ...++ | ..||+..+..+|.+.+++ .. .-|-|+|+||-||....-
T Consensus 174 Sln~l~r~~r-~~~~~~~~~wsiI-d------rW~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~ 241 (395)
T KOG1321|consen 174 SLNELWRQFR-EDGYERDIKWSII-D------RWPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSV 241 (395)
T ss_pred cHHHHHHHHH-hcCcccCCceEee-c------cccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHH
Confidence 4555666664 3455432 23333 2 357887777776554432 12 237888999999987643
No 38
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=29.70 E-value=3e+02 Score=22.57 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEE
Q 020918 70 NMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVF 124 (320)
Q Consensus 70 ~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~ 124 (320)
.++++|+ .+|++.....++.| +.+.|.+++.+..++ ...|+++.
T Consensus 24 ~l~~~l~-~~G~~v~~~~~v~D---------d~~~i~~~l~~~~~~-~~~DlVit 67 (152)
T cd00886 24 ALVELLE-EAGHEVVAYEIVPD---------DKDEIREALIEWADE-DGVDLILT 67 (152)
T ss_pred HHHHHHH-HcCCeeeeEEEcCC---------CHHHHHHHHHHHHhc-CCCCEEEE
Confidence 4777785 78998766777777 578899998877652 13465543
No 39
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=29.52 E-value=1.4e+02 Score=27.80 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEeeC
Q 020918 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGH 129 (320)
Q Consensus 68 a~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~YfSGH 129 (320)
-.+|.+.|. ++||..-.+..-.+.. -...++...+..++...+++|++++.+...
T Consensus 21 ~~d~~~~~~-~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~Dvv~~~~P~~ 75 (333)
T PRK09814 21 KNDVTKIAK-QLGFEELGIYFYNIKR------DSLSERSKRLDGILASLKPGDIVIFQFPTW 75 (333)
T ss_pred HHHHHHHHH-HCCCeEeEEEeccccc------chHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 345667775 6899854343221110 024456666777788889999999988554
No 40
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=29.48 E-value=1.6e+02 Score=23.81 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh
Q 020918 65 INDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND 115 (320)
Q Consensus 65 ~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~ 115 (320)
...+..|+++|. ..|.+.+.|.+-..... |.+|+......+.+.
T Consensus 50 ~~ea~~m~~~l~-~~gv~~~~I~~e~~s~~------T~ena~~~~~~~~~~ 93 (150)
T cd06259 50 YSEAEAMARYLI-ELGVPAEAILLEDRSTN------TYENARFSAELLRER 93 (150)
T ss_pred CCHHHHHHHHHH-HcCCCHHHeeecCCCCC------HHHHHHHHHHHHHhc
Confidence 368899999997 67888777765444322 889988888877654
No 41
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=29.47 E-value=1.6e+02 Score=24.01 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEE
Q 020918 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFY 125 (320)
Q Consensus 68 a~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~Y 125 (320)
...++++|. ++|+......++.| +.+.|.++|.+..+ ..|++++-
T Consensus 29 ~~~l~~~l~-~~G~~v~~~~~v~D---------d~~~i~~~l~~~~~---~~DliItt 73 (144)
T TIGR00177 29 GPLLAALLE-EAGFNVSRLGIVPD---------DPEEIREILRKAVD---EADVVLTT 73 (144)
T ss_pred HHHHHHHHH-HCCCeEEEEeecCC---------CHHHHHHHHHHHHh---CCCEEEEC
Confidence 345778885 78998766667766 67789999887754 35666654
No 42
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=29.21 E-value=53 Score=28.13 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=24.0
Q ss_pred ceeeEEeccCCCCCcccHHHHHHHHhccccCCceEEEEEe
Q 020918 144 FDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVD 183 (320)
Q Consensus 144 ~~~~lvp~D~~~~~~i~~~~L~~~l~~~~~~~~~v~~ilD 183 (320)
+|++|+|+|-. -...++.+|+.+...++.+++++--
T Consensus 35 lDNTLv~wd~~----~~tpe~~~W~~e~k~~gi~v~vvSN 70 (175)
T COG2179 35 LDNTLVPWDNP----DATPELRAWLAELKEAGIKVVVVSN 70 (175)
T ss_pred ccCceecccCC----CCCHHHHHHHHHHHhcCCEEEEEeC
Confidence 57899999943 2345788887765556777755543
No 43
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=29.14 E-value=2.8e+02 Score=25.37 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=36.4
Q ss_pred eEEEEEEecCCC-CCCCCCChHHHHHHHHHHHHHh---cCCCcccEEEecCC
Q 020918 45 RRAVLCGVSYNK-GKFRLKGTINDVRNMRDLLINS---FKFQEEGIIVLTEE 92 (320)
Q Consensus 45 ~~ALlIGi~y~~-~~~~L~~~~~Da~~m~~~L~~~---~Gf~~~~I~~L~d~ 92 (320)
.-+.+|-++|.- +..+.+.+..|+.+...++.++ +|+++++|.+.-++
T Consensus 109 ~g~~vv~vdYrlaPe~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdS 160 (312)
T COG0657 109 AGAVVVSVDYRLAPEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDS 160 (312)
T ss_pred cCCEEEecCCCCCCCCCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecC
Confidence 445667777764 3457899999999999999755 57888889887775
No 44
>PRK01215 competence damage-inducible protein A; Provisional
Probab=27.73 E-value=1.8e+02 Score=26.61 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEE
Q 020918 67 DVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFY 125 (320)
Q Consensus 67 Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~Y 125 (320)
....+++.|. .+|++...+.++.| +.+.|.++|....++ .|++++-
T Consensus 24 n~~~l~~~L~-~~G~~v~~~~~v~D---------d~~~I~~~l~~a~~~---~DlVItt 69 (264)
T PRK01215 24 NASWIARRLT-YLGYTVRRITVVMD---------DIEEIVSAFREAIDR---ADVVVST 69 (264)
T ss_pred hHHHHHHHHH-HCCCeEEEEEEeCC---------CHHHHHHHHHHHhcC---CCEEEEe
Confidence 3456788885 68998766666666 577899999887653 3766655
No 45
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=25.58 E-value=3.7e+02 Score=23.86 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=42.2
Q ss_pred CCCcccHHHHHHHHHHHHHhCCCC-CEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhccccC
Q 020918 96 EMYSPTKKNIQKALEWLVNDCRKG-DSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKE 174 (320)
Q Consensus 96 ~~~~pT~~~I~~al~~l~~~~~~~-D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~~~~ 174 (320)
.++.||....+ .|.+|.+.+..| -..++|..-|..- .++.|.+ -.+-++.+.|.+...+
T Consensus 134 FPDApT~RG~k-HL~eL~~l~~~G~ra~vlFvvqr~d~-------------~~f~p~~------~~Dp~fa~~l~~A~~~ 193 (215)
T PF03749_consen 134 FPDAPTERGRK-HLRELAELAEEGYRAAVLFVVQRPDA-------------ERFRPNR------EIDPEFAEALREAAEA 193 (215)
T ss_pred CCCccchHHHH-HHHHHHHHHhccCcEEEEEEEECCCC-------------CEEeECh------hcCHHHHHHHHHHHHC
Confidence 46778887654 455554444444 4445555444332 1567765 2445666666666667
Q ss_pred CceEEEEEeCCCCC
Q 020918 175 GVTLHAIVDACHSG 188 (320)
Q Consensus 175 ~~~v~~ilDcC~Sg 188 (320)
++.+ +.++|..+.
T Consensus 194 GV~v-~a~~~~~~~ 206 (215)
T PF03749_consen 194 GVEV-LAYRCSVDP 206 (215)
T ss_pred CCEE-EEEEEEEcc
Confidence 8875 778877765
No 46
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=25.54 E-value=4.1e+02 Score=24.91 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=42.5
Q ss_pred CCeEEEEEEecCCCCCCCCCChHHHHHHHHHHHHHhc-CCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCE
Q 020918 43 PSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSF-KFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDS 121 (320)
Q Consensus 43 ~~~~ALlIGi~y~~~~~~L~~~~~Da~~m~~~L~~~~-Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~ 121 (320)
..++||+||=+- ..-.....++..+.+.|.... ... ..+.+-+..- |..++.++|...++ ..+.
T Consensus 146 ~p~~avLIGG~s----~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRR-------Tp~~~~~~L~~~~~---~~~~ 210 (311)
T PF06258_consen 146 RPRVAVLIGGDS----KHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRR-------TPPEAEAALRELLK---DNPG 210 (311)
T ss_pred CCeEEEEECcCC----CCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCC-------CcHHHHHHHHHhhc---CCCc
Confidence 688999999651 111334466777766665321 111 2355444443 78888888888764 3455
Q ss_pred EEEEEeeCcc
Q 020918 122 LVFYFSGHGL 131 (320)
Q Consensus 122 l~~YfSGHG~ 131 (320)
+.|| +|.|.
T Consensus 211 ~~~~-~~~~~ 219 (311)
T PF06258_consen 211 VYIW-DGTGE 219 (311)
T ss_pred eEEe-cCCCC
Confidence 5455 66663
No 47
>KOG3573 consensus Caspase, apoptotic cysteine protease [Cell cycle control, cell division, chromosome partitioning]
Probab=24.28 E-value=5.7e+02 Score=23.59 Aligned_cols=201 Identities=12% Similarity=0.048 Sum_probs=101.9
Q ss_pred CCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCC-CEEEEEEeeCccccCCC
Q 020918 58 KFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKG-DSLVFYFSGHGLRQPDF 136 (320)
Q Consensus 58 ~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~-D~l~~YfSGHG~~~~~~ 136 (320)
.....+...|+..+.+.+. ..++. +....+. ....+...+..+......+ +....-.-+||.....
T Consensus 87 ~~~r~~~~~l~~~l~~~~~-~~~~~---v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~- 153 (300)
T KOG3573|consen 87 LKSRVGTELLATILESYER-DLGFE---VTTANDD--------IPGEMQSLLKEVSYLDDSDNNCTACSMLSHGEEKHI- 153 (300)
T ss_pred cccccChHHHHHHHHHhhh-ccCCC---ccccCcc--------ccHHHHHHHHHhhhhcccccchhhhhhhccccccee-
Confidence 4455677788888888753 56664 3433332 5566888888776543322 3333333344421110
Q ss_pred CCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCCCCCcCcchhhhccccccccCCCCCcc
Q 020918 137 NNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDLEYVYNKYQMTWEDNRPPSG 212 (320)
Q Consensus 137 ~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~Sg~~~~~~~~~~~~~~~~~~~~~~~~ 212 (320)
+. .+ ..+.-.+|...+.. .+....++ +|+=+|+.......... ......+... .
T Consensus 154 ----------~~--~~----~~~~~~~i~~~f~~~~c~~L~~kPK~-~~iqac~g~~~~~~~~~-~~~~~~~~~~----~ 211 (300)
T KOG3573|consen 154 ----------YA--KD----DVLPLEDIFHGFNGANCPSLKGKPKV-FFIQACRGDQLDLGVFP-DVDTEKLDDD----A 211 (300)
T ss_pred ----------cc--CC----CeeeHHHHHHHhhhccChhhhcCCcE-EEehhccCCCCCCCccc-cccccccccc----h
Confidence 00 00 11222334333322 22334565 77777775432111110 0000001100 0
Q ss_pred ccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccchhhhh
Q 020918 213 ARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEVKKNDCLVNTNFLR 292 (320)
Q Consensus 213 ~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~g~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~ 292 (320)
.+......-.++..|..++=+||... ..+++|=+.|++.|.....-.+.+|+..+.++++....
T Consensus 212 ~~~ips~aD~L~~~st~~g~~s~R~~-----~~gsw~Iq~Lc~~~~~~~~~~l~~ll~~v~~~~~~~~~----------- 275 (300)
T KOG3573|consen 212 TYKIPSEADFLVSYSTTPGYVSWRDP-----TKGSWFIQSLCEVLQEYAKSDLLDLLTEVNRKVSFSFD----------- 275 (300)
T ss_pred hccCccccceeEeeecCCCceeeecC-----CCceeeHHHHHHHHHHhcchhHHHHHHHHHHhhhcccc-----------
Confidence 01111223344455777888888764 24799999999999997422777777777777443321
Q ss_pred hhhcCCCCCcccccccc
Q 020918 293 RFFKDKLSQKPTLSSSG 309 (320)
Q Consensus 293 ~~~~~~~~q~P~~~~~~ 309 (320)
....+.+.|.|+.-+..
T Consensus 276 ~~~~~~~kq~p~~~s~l 292 (300)
T KOG3573|consen 276 VPGGNAQKQMPEFTSTL 292 (300)
T ss_pred cccccccccCcchhhhh
Confidence 11245667888866554
No 48
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=24.13 E-value=2.4e+02 Score=26.97 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEEeeCccccC
Q 020918 101 TKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQP 134 (320)
Q Consensus 101 T~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~~ 134 (320)
+...-..++.++.++..+++.+++-++|||..+.
T Consensus 329 ssgaalAa~~~~~~~~~~~~~Vv~i~~g~G~k~~ 362 (365)
T cd06446 329 ESSHAIAYAIKLAKKLGKEKVIVVNLSGRGDKDL 362 (365)
T ss_pred cchHHHHHHHHHHHhcCCCCeEEEEeCCCCcccc
Confidence 3334444444555555567899999999998754
No 49
>PRK07116 flavodoxin; Provisional
Probab=23.03 E-value=48 Score=27.58 Aligned_cols=14 Identities=43% Similarity=0.736 Sum_probs=11.9
Q ss_pred CEEEEEEeeCcccc
Q 020918 120 DSLVFYFSGHGLRQ 133 (320)
Q Consensus 120 D~l~~YfSGHG~~~ 133 (320)
.++++|||++|...
T Consensus 4 k~lIvY~S~tGnT~ 17 (160)
T PRK07116 4 KTLVAYFSATGTTK 17 (160)
T ss_pred cEEEEEECCCCcHH
Confidence 47999999999764
No 50
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=22.86 E-value=62 Score=26.31 Aligned_cols=17 Identities=35% Similarity=0.790 Sum_probs=12.2
Q ss_pred HHHhCCCCCEEEEEEee
Q 020918 112 LVNDCRKGDSLVFYFSG 128 (320)
Q Consensus 112 l~~~~~~~D~l~~YfSG 128 (320)
.++++++||.+|||=||
T Consensus 36 ~l~~mk~GD~vifY~s~ 52 (143)
T PF01878_consen 36 NLKRMKPGDKVIFYHSG 52 (143)
T ss_dssp HHHC--TT-EEEEEETS
T ss_pred hhhcCCCCCEEEEEEcC
Confidence 45578999999999999
No 51
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=22.50 E-value=1e+02 Score=31.49 Aligned_cols=14 Identities=36% Similarity=0.702 Sum_probs=12.7
Q ss_pred CEEEEEEeeCcccc
Q 020918 120 DSLVFYFSGHGLRQ 133 (320)
Q Consensus 120 D~l~~YfSGHG~~~ 133 (320)
+.++||+|-||...
T Consensus 445 ~~~liY~SDHGEsl 458 (555)
T COG2194 445 NTSLIYFSDHGESL 458 (555)
T ss_pred CeEEEEEcCccHhh
Confidence 89999999999855
No 52
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=21.82 E-value=5.2e+02 Score=23.24 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=40.9
Q ss_pred CCCcccHHHHH--HHHHHHHHhCCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhcccc
Q 020918 96 EMYSPTKKNIQ--KALEWLVNDCRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLK 173 (320)
Q Consensus 96 ~~~~pT~~~I~--~al~~l~~~~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~~~ 173 (320)
.++.||...++ +.|..+.++ ...+++|...|..-. .+.|.+ -.+-++.+.|.++..
T Consensus 147 FPDApT~RG~kHL~eL~~l~~~---~ra~vlF~vqr~d~~-------------~f~p~~------~~Dp~fa~~l~~A~~ 204 (232)
T TIGR00230 147 FPDAPTERGRKHLRELEEILKE---SRAVVLFVVALPSVR-------------AFSPNR------EGDEEYYRLLRRAHE 204 (232)
T ss_pred CCCCccHHHHHHHHHHHHHHHh---CCEEEEEEEeCCCCC-------------EEeeCc------ccCHHHHHHHHHHHH
Confidence 46778887765 234444444 456666666654321 466665 244567777766667
Q ss_pred CCceEEEEEeCCCC
Q 020918 174 EGVTLHAIVDACHS 187 (320)
Q Consensus 174 ~~~~v~~ilDcC~S 187 (320)
+++.+ +.++|-.+
T Consensus 205 ~GVev-~a~~~~~~ 217 (232)
T TIGR00230 205 AGVEV-RPYQVEYL 217 (232)
T ss_pred CCCEE-EEEEEEec
Confidence 88876 56666443
No 53
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=21.79 E-value=2.9e+02 Score=21.98 Aligned_cols=44 Identities=16% Similarity=0.330 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEE
Q 020918 67 DVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLV 123 (320)
Q Consensus 67 Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~ 123 (320)
....++++|+ .+|+......++.| +.+.|.+++.++.+. .|+++
T Consensus 19 ~~~~l~~~l~-~~G~~~~~~~~v~D---------d~~~I~~~l~~~~~~---~dlii 62 (135)
T smart00852 19 NGPALAELLT-ELGIEVTRYVIVPD---------DKEAIKEALREALER---ADLVI 62 (135)
T ss_pred cHHHHHHHHH-HCCCeEEEEEEeCC---------CHHHHHHHHHHHHhC---CCEEE
Confidence 3456888886 78987655666655 678899999887653 46543
No 54
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=21.58 E-value=2.8e+02 Score=23.42 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEE
Q 020918 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFY 125 (320)
Q Consensus 68 a~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~Y 125 (320)
...+++.|. ..|+....+.++.| +...|.++|....+ ..|++++-
T Consensus 21 ~~~l~~~L~-~~G~~v~~~~~v~D---------d~~~I~~~l~~~~~---~~dlVItt 65 (170)
T cd00885 21 AAFLAKELA-ELGIEVYRVTVVGD---------DEDRIAEALRRASE---RADLVITT 65 (170)
T ss_pred HHHHHHHHH-HCCCEEEEEEEeCC---------CHHHHHHHHHHHHh---CCCEEEEC
Confidence 446778886 68998766777766 57789999988765 34655544
No 55
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=21.06 E-value=3.1e+02 Score=26.51 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEEeeCccccC
Q 020918 101 TKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQP 134 (320)
Q Consensus 101 T~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~~ 134 (320)
+...-..++.++.++..+++.+++.++|||..+.
T Consensus 345 ssaaalaa~~~~~~~l~~~~~Vv~i~~g~G~~d~ 378 (385)
T TIGR00263 345 ESSHALAHLEKIAPTLPKDQIVVVNLSGRGDKDI 378 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcCCH
Confidence 3444444555566667688999999999998753
No 56
>PRK00809 hypothetical protein; Provisional
Probab=20.97 E-value=89 Score=25.89 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=16.2
Q ss_pred HHHHhCCCCCEEEEEEee-Ccc
Q 020918 111 WLVNDCRKGDSLVFYFSG-HGL 131 (320)
Q Consensus 111 ~l~~~~~~~D~l~~YfSG-HG~ 131 (320)
.++++.++||.+|||=|+ +|.
T Consensus 30 n~lr~Mk~GD~v~fYhs~~~~~ 51 (144)
T PRK00809 30 NTIEKVKPGDKLIIYVSQEYGA 51 (144)
T ss_pred hHHhhCCCCCEEEEEECCccCC
Confidence 345568999999999997 553
No 57
>PRK05569 flavodoxin; Provisional
Probab=20.74 E-value=58 Score=26.15 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=11.9
Q ss_pred CEEEEEEeeCcccc
Q 020918 120 DSLVFYFSGHGLRQ 133 (320)
Q Consensus 120 D~l~~YfSGHG~~~ 133 (320)
.+++||||+||...
T Consensus 3 ki~iiY~S~tGnT~ 16 (141)
T PRK05569 3 KVSIIYWSCGGNVE 16 (141)
T ss_pred eEEEEEECCCCHHH
Confidence 47999999999764
No 58
>PRK07591 threonine synthase; Validated
Probab=20.61 E-value=2.8e+02 Score=27.16 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHHH--hCCCCCEEEEEEeeCccccC
Q 020918 100 PTKKNIQKALEWLVN--DCRKGDSLVFYFSGHGLRQP 134 (320)
Q Consensus 100 pT~~~I~~al~~l~~--~~~~~D~l~~YfSGHG~~~~ 134 (320)
|+...-..++..+.+ ...+++.+++..+|||..+.
T Consensus 358 pssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~ 394 (421)
T PRK07591 358 TAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTL 394 (421)
T ss_pred chHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCH
Confidence 455556667777766 36688999999999998864
Done!