Query 020918
Match_columns 320
No_of_seqs 140 out of 1348
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 10:06:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f6o_A Metacaspase-1; rossmann 100.0 2.4E-51 8.2E-56 384.6 22.9 261 38-320 47-350 (350)
2 4af8_A Metacaspase MCA2; hydro 100.0 1.2E-48 4E-53 368.1 26.8 261 39-320 87-356 (367)
3 3bij_A Uncharacterized protein 100.0 6.9E-40 2.4E-44 302.2 21.0 221 42-287 1-260 (285)
4 3uoa_B Mucosa-associated lymph 100.0 1.7E-28 5.7E-33 232.7 22.5 194 42-278 3-201 (390)
5 3e4c_A Caspase-1; zymogen, inf 99.9 1.9E-21 6.3E-26 179.8 21.5 247 2-314 32-297 (302)
6 1m72_A Caspase-1; caspase, cys 99.8 2.5E-19 8.4E-24 163.5 20.0 225 42-313 30-263 (272)
7 2nn3_C Caspase-1; cysteine pro 99.8 3.6E-19 1.2E-23 164.8 19.2 225 42-313 58-291 (310)
8 2j32_A Caspase-3; Pro-caspase3 99.8 9.9E-19 3.4E-23 157.7 19.9 223 42-313 14-245 (250)
9 1f1j_A Caspase-7 protease; cas 99.8 2.2E-18 7.4E-23 159.4 20.2 227 41-313 66-301 (305)
10 4ehd_A Caspase-3; caspase, apo 99.8 4.1E-18 1.4E-22 155.5 21.8 225 41-314 41-274 (277)
11 3sir_A Caspase; hydrolase; 2.6 99.8 3.1E-19 1.1E-23 161.7 13.4 228 42-314 18-254 (259)
12 1nw9_B Caspase 9, apoptosis-re 99.8 2.6E-17 8.8E-22 150.7 22.8 230 41-314 18-273 (277)
13 3od5_A Caspase-6; caspase doma 99.8 3.1E-17 1.1E-21 150.0 21.2 231 41-314 18-264 (278)
14 3h11_B Caspase-8; cell death, 99.8 3.5E-17 1.2E-21 149.2 20.8 225 41-312 14-257 (271)
15 2fp3_A Caspase NC; apoptosis, 99.7 2.6E-16 8.9E-21 146.3 20.0 207 43-279 60-286 (316)
16 2h54_A Caspase-1; allosteric s 99.7 1.7E-16 6E-21 135.6 13.3 147 2-189 15-170 (178)
17 3h11_A CAsp8 and FADD-like apo 99.3 1.3E-11 4.4E-16 112.2 14.6 217 42-313 41-267 (272)
18 1pyo_A Caspase-2; apoptosis, c 99.1 1.4E-09 4.9E-14 91.6 14.7 120 42-190 31-159 (167)
19 2dko_A Caspase-3; low barrier 99.0 4E-09 1.4E-13 87.0 12.5 119 42-190 14-140 (146)
20 1qtn_A Caspase-8; apoptosis, d 98.9 1.1E-08 3.7E-13 86.0 13.1 120 42-190 21-155 (164)
21 3p45_A Caspase-6; protease, hu 98.8 5.8E-08 2E-12 82.4 12.9 118 42-189 42-167 (179)
22 2ql9_A Caspase-7; cysteine pro 98.8 3.9E-08 1.3E-12 83.1 11.6 118 42-189 42-167 (173)
23 2dko_B Caspase-3; low barrier 94.1 0.25 8.7E-06 37.5 8.3 80 222-313 19-99 (103)
24 2xzd_B Caspase-3; hydrolase-pr 93.7 0.33 1.1E-05 37.9 8.3 76 222-309 18-94 (118)
25 2ql9_B Caspase-7; cysteine pro 93.6 0.37 1.3E-05 36.1 8.3 78 222-311 13-91 (97)
26 1pyo_B Caspase-2; apoptosis, c 93.0 0.37 1.3E-05 36.7 7.5 77 222-311 17-94 (105)
27 1sc3_B Interleukin-1 beta conv 92.9 0.25 8.7E-06 36.4 6.2 69 222-312 11-81 (88)
28 3rjm_B Caspase-2; caspase-2, c 92.5 0.37 1.3E-05 37.5 7.0 76 222-310 18-94 (117)
29 1qtn_B Caspase-8; apoptosis, d 92.4 0.25 8.7E-06 36.9 5.7 71 222-310 15-87 (95)
30 2owr_A UDG, uracil-DNA glycosy 58.2 7.5 0.00026 33.4 3.5 47 13-64 33-80 (218)
31 1x3l_A Hypothetical protein PH 39.1 97 0.0033 29.3 8.1 37 97-133 98-136 (440)
32 3pzy_A MOG; ssgcid, seattle st 38.9 48 0.0016 26.7 5.4 43 68-123 29-71 (164)
33 3cxm_A Uracil-DNA glycosylase; 38.7 49 0.0017 29.2 5.7 107 20-130 72-207 (268)
34 7aat_A Aspartate aminotransfer 37.6 68 0.0023 28.8 6.9 56 62-125 71-129 (401)
35 2i0x_A Hypothetical protein PF 37.4 1E+02 0.0035 21.9 6.4 52 68-128 14-66 (85)
36 2b8n_A Glycerate kinase, putat 35.0 71 0.0024 30.2 6.4 78 44-133 49-140 (429)
37 3a7n_A UDG, uracil-DNA glycosy 33.6 34 0.0012 29.6 3.8 39 13-56 42-83 (238)
38 2j8x_A Uracil-DNA glycosylase; 33.2 34 0.0012 29.5 3.7 39 14-56 31-71 (231)
39 1cvr_A Gingipain R, RGPB; casp 31.4 1.2E+02 0.004 28.6 7.5 73 44-133 142-215 (435)
40 1zpw_X Hypothetical protein TT 29.6 89 0.003 22.4 5.0 55 66-129 16-71 (90)
41 3kbq_A Protein TA0487; structu 28.6 1.2E+02 0.0041 24.7 6.1 55 66-134 23-77 (172)
42 3ca8_A Protein YDCF; two domai 27.7 1.2E+02 0.0042 26.4 6.5 43 65-113 96-138 (266)
43 2hd9_A UPF0310 protein PH1033; 26.8 37 0.0013 26.9 2.6 18 112-129 31-48 (145)
44 2fts_A Gephyrin; gephyrin, neu 25.3 1.1E+02 0.0037 28.6 6.1 66 44-122 183-251 (419)
45 2gbs_A Hypothetical protein RP 24.1 56 0.0019 26.1 3.2 19 110-128 37-55 (145)
46 4g6u_B EC869 CDII; beta-augmen 23.1 76 0.0026 26.1 3.9 47 118-176 17-63 (177)
47 3tr7_A UDG, uracil-DNA glycosy 22.7 42 0.0014 29.0 2.3 40 13-56 32-74 (232)
48 2ar1_A Hypothetical protein; s 22.6 68 0.0023 26.3 3.5 20 110-129 53-72 (172)
49 2eve_A Hypothetical protein ps 22.5 70 0.0024 25.8 3.5 19 110-128 35-53 (157)
50 1zce_A Hypothetical protein AT 22.3 61 0.0021 26.1 3.1 19 110-128 38-56 (155)
51 1uz5_A MOEA protein, 402AA lon 21.7 98 0.0034 28.8 4.9 63 48-123 186-251 (402)
52 4es1_A BH0342 protein; ferredo 21.5 1.6E+02 0.0055 21.6 5.1 56 67-131 23-79 (100)
53 2p5d_A UPF0310 protein mjecl36 21.2 60 0.002 25.7 2.9 16 112-128 34-49 (147)
54 3ly1_A Putative histidinol-pho 21.0 4E+02 0.014 22.9 10.0 58 63-132 48-105 (354)
55 3fci_A UDG, uracil-DNA glycosy 20.6 3.9E+02 0.013 22.6 10.1 65 14-82 28-104 (223)
No 1
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-51 Score=384.57 Aligned_cols=261 Identities=37% Similarity=0.662 Sum_probs=197.9
Q ss_pred CCCCCCCeEEEEEEecCCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCC
Q 020918 38 SSSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCR 117 (320)
Q Consensus 38 ~~~~~~~~~ALlIGi~y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~ 117 (320)
.++..++++||||||+|+....+|++|++||++|+++|++.+||++++|.+|+|++..+...||+++|+++|.+|+++++
T Consensus 47 ~s~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~a~ 126 (350)
T 4f6o_A 47 YSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKDAQ 126 (350)
T ss_dssp CCCCCSCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHhCC
Confidence 44667899999999997776899999999999999999977899999999999976444456899999999999999999
Q ss_pred CCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhccccCCceEEEEEeCCCCCCcCcchhhh
Q 020918 118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYVY 197 (320)
Q Consensus 118 ~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~~~~~~~v~~ilDcC~Sg~~~~~~~~~ 197 (320)
++|++||||||||.+..+.+|+|.+|+|++|+|+|+...+.|.+++|.++|.+.++++++|++|+||||||++.+.++.+
T Consensus 127 pgD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~~l~~g~~vt~IlD~ChSGt~ldlp~~~ 206 (350)
T 4f6o_A 127 PNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPYTY 206 (350)
T ss_dssp TTCEEEEEEESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEECSSSCTTTTCCSEEE
T ss_pred CCCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHhhcCCCCeEEEEEccCCCCccccccccc
Confidence 99999999999999998888888999999999999887788999999999888788899999999999999999987654
Q ss_pred cccc-----ccccCCCC-------------------------------------Ccc-ccccCCCCcEEEEeecCCCccc
Q 020918 198 NKYQ-----MTWEDNRP-------------------------------------PSG-ARKATDGGLAICLSACQDNQLA 234 (320)
Q Consensus 198 ~~~~-----~~~~~~~~-------------------------------------~~~-~~~~~~~g~~~vlsA~~~~q~s 234 (320)
..++ ..|+.... .+. .....+++.+++||+|+.+|+|
T Consensus 207 ~~~g~~~e~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SgCkD~QtS 286 (350)
T 4f6o_A 207 STKGIIKEPNIWKDVGQDGLQAAISYATGNRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSAADVVMLSGSKDNQTS 286 (350)
T ss_dssp ETTEEEECCCC---------------------------------------------------CCCSEEEEEEEEC-----
T ss_pred ccccccCcchhhhhccccccchhhhhccccchhhcccchhhhhhhccccccccchhhhhhccCCCCCEEEEEecCCCCch
Confidence 4322 11221000 000 0113445678999999999999
Q ss_pred ccccccCCCcccchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCCCccccccccccccC
Q 020918 235 SDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVY 314 (320)
Q Consensus 235 ~e~~~~~g~~~~g~FT~aLl~~L~~~g~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~~ 314 (320)
.|... +| ..+|+|||+|+++|+.++.+|+.+|+..++..++ .+|.|+|||++|+++|+.
T Consensus 287 aD~~~-~g-~~~GAmTyafi~aL~~~p~~tY~~Ll~~~r~~L~-------------------~kysQ~PQLs~s~~~d~~ 345 (350)
T 4f6o_A 287 ADAVE-DG-QNTGAMSHAFIKVMTLQPQQSYLSLLQNMRKELA-------------------GKYSQKPQLSSSHPIDVN 345 (350)
T ss_dssp ----------CCCHHHHHHHHHHHHCCCCBHHHHHHHHHHHHT-------------------TTCSCEEEEEESSCCCTT
T ss_pred hhhcc-CC-ceeehhHHHHHHHHHHCCCCCHHHHHHHHHHHHH-------------------hcCCCCceecccCCCCCC
Confidence 99874 23 5699999999999999999999999999999885 468999999999999997
Q ss_pred CcccCC
Q 020918 315 KKHFIL 320 (320)
Q Consensus 315 ~~~~~~ 320 (320)
. .|++
T Consensus 346 ~-~f~~ 350 (350)
T 4f6o_A 346 L-QFIM 350 (350)
T ss_dssp S-BCCC
T ss_pred c-cccC
Confidence 7 5653
No 2
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=100.00 E-value=1.2e-48 Score=368.11 Aligned_cols=261 Identities=30% Similarity=0.480 Sum_probs=208.2
Q ss_pred CCCCCCeEEEEEEecCCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccC--CCCcccHHHHHHHHHHHHHhC
Q 020918 39 SSSRPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKD--EMYSPTKKNIQKALEWLVNDC 116 (320)
Q Consensus 39 ~~~~~~~~ALlIGi~y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~--~~~~pT~~~I~~al~~l~~~~ 116 (320)
+...+++|||+||||||....+|++|+|||++|+++|+ .+||+.++|.+|+|++.. ....||+++|+++|+||++++
T Consensus 87 ~~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~-~~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~~a 165 (367)
T 4af8_A 87 PLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQ-KRGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDA 165 (367)
T ss_dssp CCTTCCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHH-HTTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCeEEEEEEeCCCCCccCCCCHHHHHHHHHHHHH-HcCCCchheEEecccccccccccCCCHHHHHHHHHHHHHhC
Confidence 45678999999999977667899999999999999997 589999999999986421 223689999999999999999
Q ss_pred CCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhccccCCceEEEEEeCCCCCCcCcchhh
Q 020918 117 RKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYV 196 (320)
Q Consensus 117 ~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~~~~~~~v~~ilDcC~Sg~~~~~~~~ 196 (320)
+++|++||||||||.+.++. +++.+|+|++|+|+|+..++.|.+++|.++|.+.+++++++++|+||||||++.+.++.
T Consensus 166 ~pgD~l~fyFSGHG~q~~d~-~de~dg~De~LvP~D~~~~g~I~ddeL~~lLv~~l~~g~~v~vIlD~ChSGt~~dlp~~ 244 (367)
T 4af8_A 166 KPGDVLFFHYSGHGTQCKSR-GDSDEKYDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLPFT 244 (367)
T ss_dssp CTTCEEEEEEESCEEEECCC------CCEEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEEECTTCCCCTTCSEE
T ss_pred CCCCEEEEEEcCCcCccCCC-CCCCCCcceEEEeecCCcCCCccHHHHHHHHHHhccCCCEEEEEEeCCCCCcccccccc
Confidence 99999999999999998875 56778999999999988778899999999977888878899999999999999988764
Q ss_pred hccccccccC-CCCCccccc-cCCCCcEEEEeecCCCccccccccc---C--CCcccchHHHHHHHHHhcCCCCCHHHHH
Q 020918 197 YNKYQMTWED-NRPPSGARK-ATDGGLAICLSACQDNQLASDTSAF---T--GNTMNGVMTYVLAEIVNKHPGLSYGDLL 269 (320)
Q Consensus 197 ~~~~~~~~~~-~~~~~~~~~-~~~~g~~~vlsA~~~~q~s~e~~~~---~--g~~~~g~FT~aLl~~L~~~g~vt~~~L~ 269 (320)
+......... .......+. ...++.+++||||+++|+|.|.... + +...+|+|||+|+++|++++.+|+.+|+
T Consensus 245 ~~~r~~~~~~~~~~~~~~~~~~~~~~~vi~~Sac~d~QtSad~~~~~~f~~g~~~~~GafTyali~~L~~~~~~Ty~~Ll 324 (367)
T 4af8_A 245 YVCSGGEQASGTPHMKRIREGNDVLGDVMMISGCADEQTSADVKNTATFGTGSTGAGGAATQCITCMLMNNQSLSYGKLL 324 (367)
T ss_dssp EECCTTCCTTSCCCCEECSSCCCCCSEEEEEEEECCCSCCCCCC-------CCCBCBSHHHHHHHHHHHCCSCCBHHHHH
T ss_pred cccccccccccchhhhhhccCCCCCCCEEEEEecCCCCchhhhhccccccccccCcccHHHHHHHHHHHhCCCCCHHHHH
Confidence 3321110000 000011111 2345667899999999999997531 1 1246899999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccchhhhhhhhcCCCCCccccccccccccCCcccCC
Q 020918 270 DLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVYKKHFIL 320 (320)
Q Consensus 270 ~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~~~~~~~~ 320 (320)
.+++..|++ .++.|+|||++|+++|++.+ |+|
T Consensus 325 ~~vr~~l~~------------------~g~~Q~PqLsss~~~d~~~~-F~l 356 (367)
T 4af8_A 325 IETRDMLKR------------------KRFKQVPQLSASKAIDLDQT-FSL 356 (367)
T ss_dssp HHHHHHHHH------------------TTBSCEEEEEESSCBCTTSB-CCS
T ss_pred HHHHHHHHH------------------hCCCCCceeccCCCCCCCce-eEe
Confidence 999999984 35789999999999999864 654
No 3
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=100.00 E-value=6.9e-40 Score=302.18 Aligned_cols=221 Identities=26% Similarity=0.394 Sum_probs=168.6
Q ss_pred CCCeEEEEEEec-CC-----CCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh
Q 020918 42 RPSRRAVLCGVS-YN-----KGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND 115 (320)
Q Consensus 42 ~~~~~ALlIGi~-y~-----~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~ 115 (320)
|++++||||||+ |. ....+|++|++||+.|+++|+ ++||+ |.+|.|++ ||+++|+.+|.+|+++
T Consensus 1 m~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~-~~Gf~---v~~l~~~~------~t~~~i~~al~~l~~~ 70 (285)
T 3bij_A 1 MPKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAA-ERGFA---VTTLMTKA------ATRAKVIDAIGKAAKA 70 (285)
T ss_dssp -CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHH-HTTCE---EEEEEGGG------CCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHH-HcCCc---eEEecCCc------cCHHHHHHHHHHHHHh
Confidence 579999999999 53 246899999999999999995 68997 67777754 6999999999999999
Q ss_pred CCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhccccCCceEEEEEeCCCCCCcCc-ch
Q 020918 116 CRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILD-LE 194 (320)
Q Consensus 116 ~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~~~~~~~v~~ilDcC~Sg~~~~-~~ 194 (320)
++++|++||||||||.+..+..|++.+|++++|+|+|. .+.+++|..+| +.++++.++++||||||||++.+ .+
T Consensus 71 ~~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~----~i~~~~l~~~l-~~l~~~~~~~vilD~C~SG~~~~~~p 145 (285)
T 3bij_A 71 LGKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDG----ELIDDELYALL-GKFAAGVRVLVFSDSCHSGTVVKMAY 145 (285)
T ss_dssp CCTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSS----EEEHHHHHHHH-TTSCSSCEEEEEEECCCCCCHHHHHH
T ss_pred CCCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCC----CccHHHHHHHH-HhccCCCeEEEEEecCCCCccccccc
Confidence 99999999999999999877668888999999999994 47788999987 45665678999999999998876 33
Q ss_pred hhhccc---------cccccCCCCCccc----------------------cccCCCCcEEEEeecCCCcccccccccCCC
Q 020918 195 YVYNKY---------QMTWEDNRPPSGA----------------------RKATDGGLAICLSACQDNQLASDTSAFTGN 243 (320)
Q Consensus 195 ~~~~~~---------~~~~~~~~~~~~~----------------------~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~ 243 (320)
+..... +.... ..+... .....++.+++|+||+++|+|+|..
T Consensus 146 ~~~~~~~~~~~~~~g~~~~r--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~lsa~~~~q~A~e~~----- 218 (285)
T 3bij_A 146 YNGTTAARSAGPDEGEIRYR--AMPQSVAMRTYRANREFYDTIQQKTKKVDLADVKASILLISGCQDNQLSQDGA----- 218 (285)
T ss_dssp TTC-------------CEES--BCCHHHHHHHHHHTHHHHHHHHHHCCCCCTTTCSSEEEEEESSCTTSCCEECS-----
T ss_pred ccccccccccccccccccee--ecCchhhhhhhhcchhHHHHHhhhcccccccCCCCCEEEEEeCCCCccccccc-----
Confidence 211000 00000 000000 0122344468899999999999863
Q ss_pred cccchHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhhhcccccc
Q 020918 244 TMNGVMTYVLAEIVNKH-PGLSYGDLLDLIYERIEEVKKNDCLVN 287 (320)
Q Consensus 244 ~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v~~~v~~~~~q~~~~~ 287 (320)
.+|+||++|+++|++. +.+|+.+|+++|++.+. ..|+|++.
T Consensus 219 -~~G~FT~aLl~~L~~~~~~~s~~~l~~~v~~~~~--~~Q~P~~~ 260 (285)
T 3bij_A 219 -FNGAFTGQLLRVWKNGLYKGSYRSFHKAIVRRMP--PDQTPNFF 260 (285)
T ss_dssp -SSCHHHHHHHHHHGGGTCCSCHHHHHHHHHHHSC--TTCCCEEE
T ss_pred -cCCHHHHHHHHHHhhCCCCcCHHHHHHHHHHhcC--CCCCccee
Confidence 4899999999999985 37999999999887542 23444443
No 4
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=99.96 E-value=1.7e-28 Score=232.69 Aligned_cols=194 Identities=20% Similarity=0.264 Sum_probs=149.7
Q ss_pred CCCeEEEEEEec-CCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCC
Q 020918 42 RPSRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGD 120 (320)
Q Consensus 42 ~~~~~ALlIGi~-y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D 120 (320)
+.+++||||||+ |.. ..+|++|.+||++|+++|+ .+||+ |.++.| +|+++|+++|.++.++..++|
T Consensus 3 A~~r~ALIIGn~~Y~~-~~~L~ga~~DA~~L~~~L~-~lGF~---V~~l~D--------lT~~eI~~aL~~f~~~~~~~D 69 (390)
T 3uoa_B 3 AKDKVALLIGNMNYRE-HPKLKAPLVDVYELTNLLR-QLDFK---VVSLLD--------LTEYEMRNAVDEFLLLLDKGV 69 (390)
T ss_dssp BSCEEEEEEECCCCSS-SCCCSTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHTCCTTC
T ss_pred CCCCEEEEEEecCCCC-cccCCChHHHHHHHHHHHH-HcCCe---EEEeec--------CCHHHHHHHHHHHHhhCCCCC
Confidence 478999999999 665 6899999999999999997 69996 677777 499999999999999999999
Q ss_pred EEEEEEeeCccccCCCCCCCCCCceeeEEeccCCC----CCcccHHHHHHHHhccccCCceEEEEEeCCCCCCcCcchhh
Q 020918 121 SLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLK----EGMIIDNDINSIIVKPLKEGVTLHAIVDACHSGTILDLEYV 196 (320)
Q Consensus 121 ~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~----~~~i~~~~L~~~l~~~~~~~~~v~~ilDcC~Sg~~~~~~~~ 196 (320)
.++|||||||....+ ..||+|+|+.. ...+..++|...+.. . ++...++||||||++...+...
T Consensus 70 ~~l~yfsGHG~~~~g---------~~yL~p~Da~~~~~~~~~isl~~Ll~~l~~-~-~~K~kL~ILDACrg~~~~~~~~- 137 (390)
T 3uoa_B 70 YGLLYYAGHGYENFG---------NSFMVPVDAPNPYRSENCLCVQNILKLMQE-K-ETGLNVFLLDMCRKRNDYDDTI- 137 (390)
T ss_dssp EEEEEEESCEEEETT---------EEEECCTTCCSSCCGGGSEEHHHHHHHHHH-T-TCSEEEEEEESCCCCCTTCCCC-
T ss_pred EEEEEEecCccccCC---------cceEEecCCCccccccceeeHHHHHHHHHh-c-CCCceEEEEECCCCCCcccccc-
Confidence 999999999998642 24899999863 245777888877754 2 3345679999999963322110
Q ss_pred hccccccccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 020918 197 YNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDLIYERI 276 (320)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~g~vt~~~L~~~v~~~v 276 (320)
. .. . ......+ .+++.||.+++.|++... +...+|+||++|+++|++ ..++.+|+.+|.++|
T Consensus 138 ---~--~~-~-------~ip~~ad-~Li~yAT~pG~~A~r~~~--d~~~gS~FtqaL~e~L~~--~~dl~~LLt~Vn~~V 199 (390)
T 3uoa_B 138 ---P--IL-D-------ALKVTAN-IVFGYATCQGAEAFEIQH--SGLANGIFMKFLKDRLLE--DKKITVLLDEVAEDM 199 (390)
T ss_dssp ---C--CC-C-------CCCCCSC-EEEEESSCTTCCCEECSS--CTTCCCHHHHHHTTTTTC--SSCHHHHHHHHHHHH
T ss_pred ---c--cc-c-------cCcccCC-cEEEEEcCCCcEeeecCC--CCCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHHH
Confidence 0 00 0 0111233 466788999999998641 113589999999999998 689999999999999
Q ss_pred Hh
Q 020918 277 EE 278 (320)
Q Consensus 277 ~~ 278 (320)
..
T Consensus 200 a~ 201 (390)
T 3uoa_B 200 GK 201 (390)
T ss_dssp TT
T ss_pred hh
Confidence 73
No 5
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=99.88 E-value=1.9e-21 Score=179.80 Aligned_cols=247 Identities=19% Similarity=0.212 Sum_probs=176.1
Q ss_pred cccCCCCccchhhHHhhhhhcCccccccCCCCCCCCCCCCCCCeEEEEEEec-CCCCCCCCCChHHHHHHHHHHHHHhcC
Q 020918 2 QICPRGNFGCNIMKKIRNDEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFK 80 (320)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ALlIGi~-y~~~~~~L~~~~~Da~~m~~~L~~~~G 80 (320)
.-||+++|.. +++.|.+||||- .....+++.|||||+. |. .+.++.|+.+|++.|+++|+ .+|
T Consensus 32 ~~c~~~~~~~--~~~~~~~e~Y~m------------~~~~~~~r~aLII~N~~f~-~l~~R~G~~~Da~~L~~~f~-~LG 95 (302)
T 3e4c_A 32 KLCSLEEAQR--IWKQKSAEIYPI------------MDKSSRTRLALIICNEEFD-SIPRRTGAEVDITGMTMLLQ-NLG 95 (302)
T ss_dssp CCCCHHHHHH--HHHHHGGGBCCC------------CCTTTCCCEEEEEECCSCS-SSCCCTTHHHHHHHHHHHHH-HTT
T ss_pred ccCCHHHHHH--HHHhcccccccc------------CCCCCCccEEEEEECcCCC-CCCCCCCcHHHHHHHHHHHH-HCC
Confidence 4699999999 999999999998 5555678999999999 65 48999999999999999996 799
Q ss_pred CCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh--CCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCC--C
Q 020918 81 FQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND--CRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLK--E 156 (320)
Q Consensus 81 f~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~--~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~--~ 156 (320)
|. |.+..| +|..+|.++|.++.++ ....|.++|||.|||... ++++.|... .
T Consensus 96 F~---V~~~~d--------lt~~em~~~l~~f~~~~dh~~~d~~vv~~lsHG~~~-------------~i~g~D~~~~~~ 151 (302)
T 3e4c_A 96 YS---VDVKKN--------LTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIRE-------------GICGKKHSEQVP 151 (302)
T ss_dssp CE---EEEEES--------CCHHHHHHHHHHHHTCGGGGGCSCEEEEEEEEEETT-------------EEECTTCCSSSC
T ss_pred CE---EEEeeC--------CCHHHHHHHHHHHHhhhccCCCCEEEEEEeccCcCC-------------eEEeecccccCC
Confidence 96 677777 4999999999999763 456799999999999973 477777531 1
Q ss_pred CcccHHHHHHHHhcc----ccCCceEEEEEeCCCCCCcCcchhhhccccc-c----c-cCCCC--CccccccCCCCcEEE
Q 020918 157 GMIIDNDINSIIVKP----LKEGVTLHAIVDACHSGTILDLEYVYNKYQM-T----W-EDNRP--PSGARKATDGGLAIC 224 (320)
Q Consensus 157 ~~i~~~~L~~~l~~~----~~~~~~v~~ilDcC~Sg~~~~~~~~~~~~~~-~----~-~~~~~--~~~~~~~~~~g~~~v 224 (320)
..+.-++|...+... +....+ ++|||||+........ ..+.. . . ..... ..+..........++
T Consensus 152 ~~v~l~~I~~~F~~~~CpsL~gKPK-lffIQACRG~~~~~~~---~~ds~~~~~~~~~~~~~~~~~d~~~~ip~~aDfLi 227 (302)
T 3e4c_A 152 DILQLNAIFNMLNTKNCPSLKDKPK-VIIIQAARGDSPGVVW---FKDSVGVSGNLSLPTTEEFEDDAIKKAHIEKDFIA 227 (302)
T ss_dssp CEECHHHHHHHTSTTTCGGGTTSCE-EEEEEEECSSSCCCCC---CCCC--------CCCCCCCCCHHHHTSCSSCSEEE
T ss_pred cEEEHHHHHHHHhhhcchhhcCCcc-EEEEECCCCCCCCcce---eccCcccccccccccccccccccccccCCCCCEEE
Confidence 346667787776431 223345 5999999976552110 00000 0 0 00000 000111111223566
Q ss_pred EeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCCCcc
Q 020918 225 LSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKP 303 (320)
Q Consensus 225 lsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~q~P 303 (320)
..|+.++.+||... ..+++|+++|++.|+.. +...+.+++..|+..|.. ...+.|+|
T Consensus 228 ~yST~pG~vS~R~~-----~~GSwFIqaL~~~l~~~~~~~dl~~il~~V~~~v~~-----------------~~~~kQ~P 285 (302)
T 3e4c_A 228 FCSSTPDNVSWRHP-----TMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQ-----------------PDGRAQMP 285 (302)
T ss_dssp EEECCCCCCCSSST-----TCCCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTSS-----------------CCSSCCCC
T ss_pred EEeCCCCceeecCC-----CCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC-----------------CCCceeee
Confidence 67888999998764 35799999999999974 568999999999988764 14568999
Q ss_pred ccc-cccccccC
Q 020918 304 TLS-SSGRFEVY 314 (320)
Q Consensus 304 ~~~-~~~~~~~~ 314 (320)
|.. ++..-++|
T Consensus 286 ~~~~ssLtk~fy 297 (302)
T 3e4c_A 286 TTERVTLTRCFY 297 (302)
T ss_dssp EEECBCCCSBCC
T ss_pred eeeccCCcceEE
Confidence 985 66554443
No 6
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=99.83 E-value=2.5e-19 Score=163.47 Aligned_cols=225 Identities=14% Similarity=0.121 Sum_probs=154.4
Q ss_pred CCCeEEEEEEec-CCC-CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CCC
Q 020918 42 RPSRRAVLCGVS-YNK-GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CRK 118 (320)
Q Consensus 42 ~~~~~ALlIGi~-y~~-~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~-~~~ 118 (320)
.++++|||||+. |.. .+.++.|+.+|++.|+++|+ .+||. |.+..| +|..+|+++|+++.+. ...
T Consensus 30 ~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~dh~~ 97 (272)
T 1m72_A 30 KHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSD 97 (272)
T ss_dssp SEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCTT
T ss_pred CCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------cCHHHHHHHHHHHHHhhcCC
Confidence 357899999998 764 47899999999999999996 79996 677777 4999999999999876 466
Q ss_pred CCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCCCCCcCcch
Q 020918 119 GDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDLE 194 (320)
Q Consensus 119 ~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~Sg~~~~~~ 194 (320)
.|.++|||.|||.. | ++++.|. .+.-++|...+.. .+....+ ++|||||+...+....
T Consensus 98 ~d~~v~~~lsHG~~----------~---~i~~~D~----~v~l~~i~~~f~~~~cpsL~gKPK-lffiqACRg~~~~~g~ 159 (272)
T 1m72_A 98 ADCLLVAVLTHGEL----------G---MLYAKDT----HYKPDNLWYYFTADKCPTLAGKPK-LFFIQACQGDRLDGGI 159 (272)
T ss_dssp EEEEEEEEESCEET----------T---EEECSSS----EECTTHHHHTTSTTTCGGGTTSCE-EEEEESCSSSBCBCCE
T ss_pred CCEEEEEEcCCCCC----------C---EEEecCC----cEEHHHHHHHhccccChhhcCCce-EEEEeCCCCCcccCCc
Confidence 79999999999973 1 7999985 3444566665532 1223445 5999999976553211
Q ss_pred hhhccccccccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHHHH
Q 020918 195 YVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLIY 273 (320)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v~ 273 (320)
.. . .......+............++..|+.++.+|+... ..+|+|+++|++.|+.. +...+.+|+..|+
T Consensus 160 ~~-~----~~~~d~~~~~~~~iP~~aD~Li~ysT~pG~vs~r~~-----~~GS~fiq~L~~~l~~~~~~~dl~~ilt~V~ 229 (272)
T 1m72_A 160 TL-S----RTETDGSPSTSYRIPVHADFLIAFSTVPGYFSWRNT-----TRGSWFMQALCEELRYAGTERDILTLLTFVC 229 (272)
T ss_dssp EE-E----C---------CEEECTTCSEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred cc-c----ccccccccccccccCCCCCEEEEEeCCCCcEeecCC-----CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 00 0 000000000000111222356677888999998764 35899999999999985 4689999999999
Q ss_pred HHHHhh-hhcccccchhhhhhhhcCCCCCcccccccccccc
Q 020918 274 ERIEEV-KKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEV 313 (320)
Q Consensus 274 ~~v~~~-~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~ 313 (320)
++|... ....|. ........|.||..++..-++
T Consensus 230 ~~V~~~~~s~~~~-------~~~~~~~kQ~P~~~stLtk~l 263 (272)
T 1m72_A 230 QKVALDFESNAPD-------SAMMHQQKQVPCITSMLTRLL 263 (272)
T ss_dssp HHHHHHCCCCCTT-------CGGGTTCBCCCEEEECCSSBC
T ss_pred HHHHHHhhccccc-------ccccCCceEcceeeeeccceE
Confidence 999753 211111 111356679999987754443
No 7
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=99.82 E-value=3.6e-19 Score=164.76 Aligned_cols=225 Identities=13% Similarity=0.096 Sum_probs=153.5
Q ss_pred CCCeEEEEEEec-CCC-CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CCC
Q 020918 42 RPSRRAVLCGVS-YNK-GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CRK 118 (320)
Q Consensus 42 ~~~~~ALlIGi~-y~~-~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~-~~~ 118 (320)
.++++||||++. |.. .+.++.|+.+|++.|+++|+ .+||. |.+..| +|..+|+++|.++.++ ...
T Consensus 58 ~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~dh~~ 125 (310)
T 2nn3_C 58 KHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSD 125 (310)
T ss_dssp SBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHSSCGGG
T ss_pred CCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHHhccCC
Confidence 458899999998 764 47899999999999999996 79996 677777 4999999999999875 456
Q ss_pred CCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCCCCCcCcch
Q 020918 119 GDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDLE 194 (320)
Q Consensus 119 ~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~Sg~~~~~~ 194 (320)
.|.++|||.|||... ++++.|. .+.-++|...+.. .+....+ ++|||||+...+....
T Consensus 126 ~D~~vv~ilSHG~~g-------------~i~g~D~----~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~d~g~ 187 (310)
T 2nn3_C 126 ADCLLVAVLTAGELG-------------MLYAKDT----HYKPDNLWYYFTADKCPTLAGKPK-LFFIQACQGDRLDGGI 187 (310)
T ss_dssp BSCEEEEEEEEEETT-------------EEECSSC----EECTHHHHGGGSTTTCGGGTTSCE-EEEEEEECCCCCCCCC
T ss_pred CCEEEEEEeCCCCCC-------------EEEecCC----cEEHHHHHHHhccccChhhcCCce-EEEEecccCCccccCc
Confidence 799999999999731 7999995 3555666665532 1223345 5999999976553221
Q ss_pred hhhccccccccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHHHH
Q 020918 195 YVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLIY 273 (320)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v~ 273 (320)
.... ......+............++..|+.++.+||... ..+|+|+++|++.|+.. +...+.+|+..|+
T Consensus 188 ~~~~-----~~~d~~~~~~~~iP~~aD~LiayST~pG~vS~R~~-----~~GSwFIqaL~~~l~~~~~~~dl~~ilt~Vn 257 (310)
T 2nn3_C 188 TLSR-----TETDGSPSTSYRIPVHADFLIAFSTVPGYFSWRNT-----TRGSWFMQALCEELRYAGTERDILTLLTFVC 257 (310)
T ss_dssp ------------------CCCCCCSTTEEEEECCCCCEEESSSS-----EEEEHHHHHHHHHHHTTTTTSCHHHHHHHHH
T ss_pred cccc-----cccccccccccccCCCCCEEEEEeCCCCceeecCC-----CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 1000 00000000000111122356677888999998764 35899999999999996 4689999999999
Q ss_pred HHHHhh-hhcccccchhhhhhhhcCCCCCcccccccccccc
Q 020918 274 ERIEEV-KKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEV 313 (320)
Q Consensus 274 ~~v~~~-~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~ 313 (320)
++|... ....|. ........|.||..++..-++
T Consensus 258 ~~V~~~~~s~~p~-------~~~~~~~kQ~P~~~stLtk~l 291 (310)
T 2nn3_C 258 QKVALDFESNAPD-------SAMMHQQKQVPCITSMLTRLL 291 (310)
T ss_dssp HHHHHHTTSSSCC-------SSCSCCSCCCCEEEECCSSBC
T ss_pred HHHHHHhhccccc-------ccccCCceEcceeeeeccceE
Confidence 999743 211110 001245578888877754433
No 8
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=99.82 E-value=9.9e-19 Score=157.74 Aligned_cols=223 Identities=14% Similarity=0.114 Sum_probs=155.1
Q ss_pred CCCeEEEEEEec-CCC--CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhC-C
Q 020918 42 RPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDC-R 117 (320)
Q Consensus 42 ~~~~~ALlIGi~-y~~--~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~-~ 117 (320)
.++++|||||+. |.. .+.++.|+.+|++.|+++|+ .+||. |.+..| +|..+|+++|+++.++. .
T Consensus 14 ~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~~~ 81 (250)
T 2j32_A 14 PEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHS 81 (250)
T ss_dssp SEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhcc
Confidence 468899999998 764 37899999999999999996 79996 677777 49999999999998874 5
Q ss_pred CCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhcc----ccCCceEEEEEeCCCCCCcCcc
Q 020918 118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKP----LKEGVTLHAIVDACHSGTILDL 193 (320)
Q Consensus 118 ~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~----~~~~~~v~~ilDcC~Sg~~~~~ 193 (320)
..|.++|||.|||.. | .+++.|. .+.-++|...+... +....+ ++|||||+...+...
T Consensus 82 ~~d~~v~~~lsHG~~----------g---~i~~~D~----~v~l~~i~~~f~~~~cp~L~gKPK-lf~iqACRg~~~~~g 143 (250)
T 2j32_A 82 KRSSFVCVLLSHGEE----------G---IIFGTNG----PVDLKKITNFFRGDRCRSLTGKPK-LFIIQACRGTELDCG 143 (250)
T ss_dssp TEEEEEEEEESCEET----------T---EEEETTE----EEEHHHHHHTTSTTTCGGGTTSCE-EEEEESCSEEECBCC
T ss_pred CCCEEEEEECCCCCC----------C---eEEecCC----cEEHHHHHHHhccccChhHcCCCe-EEEEecccCCcccCC
Confidence 579999999999983 1 4778884 45666777665321 233455 599999997544221
Q ss_pred hhhhccccccccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHHH
Q 020918 194 EYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLI 272 (320)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v 272 (320)
... +.. ..... ...........++..|+.++.+|+... ..+|+|+++|++.|++. +...+.+++..|
T Consensus 144 ~~~---~~~-~~~~~---~~~~ip~~aD~Li~ysT~pG~vs~r~~-----~~gS~fiq~L~~~l~~~~~~~dl~~ilt~V 211 (250)
T 2j32_A 144 IAT---DSG-VDDDM---ACHKIPVEADFLYAYSTAPGYYSWRNS-----KDGSWFIQSLCAMLKQYADKLEFMHILTRV 211 (250)
T ss_dssp CCC-----------------CCCCTTTTEEEEESSCTEECCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred ccc---cCC-ccccc---cccccCCCCCEEEEEeCCCccEEecCC-----CCCcHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 100 000 00000 000111122356677888999998764 35899999999999984 578999999999
Q ss_pred HHHHHhhhhcccccchhhhhhhhcCCCCCcccccccccccc
Q 020918 273 YERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEV 313 (320)
Q Consensus 273 ~~~v~~~~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~ 313 (320)
+++|...-...+. ........|.||+.++..-++
T Consensus 212 ~~~V~~~~~~~~~-------~~~~~~~kQ~P~~~ssL~k~l 245 (250)
T 2j32_A 212 NRKVATEFESFSF-------DATFHAKKQIPCIVSMLTKEL 245 (250)
T ss_dssp HHHHHHHCCCCCS-------STTTTTCBCCCEEEECCSSBC
T ss_pred HHHHHHHhccccC-------CcCCCCceEccEeeeeccceE
Confidence 9999876211100 001256679999998765444
No 9
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=99.80 E-value=2.2e-18 Score=159.38 Aligned_cols=227 Identities=15% Similarity=0.115 Sum_probs=154.7
Q ss_pred CCCCeEEEEEEec-CCC--CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhC-
Q 020918 41 SRPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDC- 116 (320)
Q Consensus 41 ~~~~~~ALlIGi~-y~~--~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~- 116 (320)
..++++|||||+. |.. .+.++.|+.+|++.|+++|+ .+||. |.+..| +|..+|+++|+++.+..
T Consensus 66 ~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h 133 (305)
T 1f1j_A 66 FEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDH 133 (305)
T ss_dssp SSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHHSCG
T ss_pred CCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------cCHHHHHHHHHHHHHhhc
Confidence 3468899999998 764 36788999999999999996 79996 677777 49999999999998763
Q ss_pred CCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCCCCCcCc
Q 020918 117 RKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILD 192 (320)
Q Consensus 117 ~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~Sg~~~~ 192 (320)
...|.++|||.|||... ++++.|. .+.-++|...+.. .+....+ ++|||||+...+..
T Consensus 134 ~~~d~~vv~ilsHG~~~-------------~i~g~D~----~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~~~ 195 (305)
T 1f1j_A 134 TNAACFACILLSHGEEN-------------VIYGKDG----VTPIKDLTAHFRGDRSKTLLEKPK-LFFIQACRGTELDD 195 (305)
T ss_dssp GGEEEEEEEEESCEETT-------------EEECSSS----EEEHHHHHHTTSTTTCGGGTTSCE-EEEEESCCSSBCBC
T ss_pred CCCCEEEEEEecCCCCC-------------eEEecCC----eEEHHHHHHHhhhccChhhcCCce-EEEeccccCCcccC
Confidence 45799999999999852 6899984 3555667655421 1223445 59999999876532
Q ss_pred chhhhccccccccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHH
Q 020918 193 LEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDL 271 (320)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~ 271 (320)
.... +...... ...............++..|+.++.+|+... ..+|+|+++|++.|+.. ....+.+|+..
T Consensus 196 g~~~---~~~~~~~-~~~~~~~~ip~~aD~LiayST~pG~vs~r~~-----~~GS~FiqaL~~~l~~~~~~~dl~~ilt~ 266 (305)
T 1f1j_A 196 GIQA---DSGPIND-TDANPRYKIPVEADFLFAYSTVPGYYSWRSP-----GRGSWFVQALCSILEEHGKDLEIMQILTR 266 (305)
T ss_dssp CBC-------------------CBCTTTTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred Cccc---cCCcccc-cccccccccCCCCCEEEEEECCCCeeccCCC-----CCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 2110 0000000 0000000111222356677888999998764 35899999999999985 46899999999
Q ss_pred HHHHHHhhhhcccccchhhhhhhhcCCCCCcccccccccccc
Q 020918 272 IYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEV 313 (320)
Q Consensus 272 v~~~v~~~~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~ 313 (320)
|+++|........ ...-.....|.||..++..-++
T Consensus 267 Vn~~V~~~~~~~~-------~~~~~~~~kQ~P~~~ssLtk~l 301 (305)
T 1f1j_A 267 VNDRVARHFESQS-------DDPHFHEKKQIPCVVSMLTKEL 301 (305)
T ss_dssp HHHHHHHHCCCCC-------SSGGGSSCBCCCEEEECCSSBC
T ss_pred HHHHHHHHhhccc-------cccccCCceECceeeeecccee
Confidence 9999987522100 0001255689999988765444
No 10
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=99.80 E-value=4.1e-18 Score=155.54 Aligned_cols=225 Identities=14% Similarity=0.109 Sum_probs=157.7
Q ss_pred CCCCeEEEEEEec-CCC--CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-C
Q 020918 41 SRPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-C 116 (320)
Q Consensus 41 ~~~~~~ALlIGi~-y~~--~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~-~ 116 (320)
..++++|||||+. |.. .+.++.|+.+|++.|+++|+ .+||. |.+..| +|..+|.++|.++.+. .
T Consensus 41 ~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~dh 108 (277)
T 4ehd_A 41 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDH 108 (277)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCC
T ss_pred CCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhcc
Confidence 3578999999999 764 47899999999999999996 79996 777777 4999999999999875 5
Q ss_pred CCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhcc----ccCCceEEEEEeCCCCCCcCc
Q 020918 117 RKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKP----LKEGVTLHAIVDACHSGTILD 192 (320)
Q Consensus 117 ~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~----~~~~~~v~~ilDcC~Sg~~~~ 192 (320)
...|.+++||.|||... ++++.|. .+.-++|...+... +....+ ++|||||+......
T Consensus 109 ~~~d~~vv~ilSHG~~g-------------~i~g~D~----~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~~~ 170 (277)
T 4ehd_A 109 SKRSSFVCVLLSHGEEG-------------IIFGTNG----PVDLKKITNFFRGDRCRSLTGKPK-LFIIQACRGTELDC 170 (277)
T ss_dssp TTEEEEEEEEESCEETT-------------EEEETTE----EEEHHHHHHTTSTTTCGGGTTSCE-EEEEESCCSSBCBC
T ss_pred cCCCEEEEEEEcCCCCC-------------EEEEeCC----cEeHHHHHHHhhhccCchhcCCcc-EEEEecCCCCcccC
Confidence 66799999999999862 6899984 36666777665321 223345 59999999765432
Q ss_pred chhhhccccccccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHH
Q 020918 193 LEYVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDL 271 (320)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~ 271 (320)
.... +...-.+ . ...........++..|+.++.+|+... ..+++|+++|++.|+.. +...+.+|+..
T Consensus 171 g~~~---~~~~~~~-~---~~~~ip~~aD~Li~yST~pG~vs~r~~-----~~GS~fIq~L~~~l~~~~~~~dl~~ilt~ 238 (277)
T 4ehd_A 171 GIET---DSGVDDD-M---ACHKIPVEADFLYACSTAPGYYSWRNS-----KDGSWFIQSLCAMLKQYADKLEFMHILTR 238 (277)
T ss_dssp CCCC-----------------CCCCTTTTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred Cccc---cCCcccc-c---cccccCCCCCEEEEEECCCCeEeecCC-----CCCcHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 1110 0000000 0 001111222356677888999998764 35799999999999984 57899999999
Q ss_pred HHHHHHhhhhcccccchhhhhhhhcCCCCCccccccccccccC
Q 020918 272 IYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVY 314 (320)
Q Consensus 272 v~~~v~~~~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~~ 314 (320)
|+++|........ .+ .-.....|.||..++..-++|
T Consensus 239 V~~~V~~~~es~~------~~-~~~~~~kQ~P~~~stLtk~ly 274 (277)
T 4ehd_A 239 VNRKVATEFESFS------FD-ATFHAKKQIPCIVSMLTKELY 274 (277)
T ss_dssp HHHHHHHHCCCCC------SS-GGGTTCBCCCEEEECCSSBCC
T ss_pred HHHHHHHHhhhcc------CC-CCcCCceEeeEEEEecceEEE
Confidence 9999986422100 00 012567899999887655544
No 11
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=99.80 E-value=3.1e-19 Score=161.74 Aligned_cols=228 Identities=14% Similarity=0.105 Sum_probs=140.3
Q ss_pred CCCeEEEEEEec-CCC-CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CCC
Q 020918 42 RPSRRAVLCGVS-YNK-GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CRK 118 (320)
Q Consensus 42 ~~~~~ALlIGi~-y~~-~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~-~~~ 118 (320)
.++++||||++. |.. .+.++.|+.+|++.|+++|+ .+||. |.+..| +|..+|.++|.++.+. ...
T Consensus 18 ~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h~~ 85 (259)
T 3sir_A 18 KNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLK-QLDFE---VTVYKD--------CRYKDILRTIEYSASQNHSD 85 (259)
T ss_dssp SEEEEEEEEEECCC-----------CCHHHHHHHHHH-HTTCE---EEEEEE--------CSHHHHHHHHHHHHTSCCTT
T ss_pred CCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhccC
Confidence 467899999999 764 47888999999999999996 79996 677777 4999999999999875 566
Q ss_pred CCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCCCCCcCcch
Q 020918 119 GDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDLE 194 (320)
Q Consensus 119 ~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~Sg~~~~~~ 194 (320)
.|.++|||.|||... ++++.|. .+.-++|...+.. .+....+ ++|||||+...+....
T Consensus 86 ~d~~v~~~lsHG~~g-------------~i~~~D~----~v~l~~i~~~f~~~~cpsL~gKPK-lf~iQACRG~~~~~g~ 147 (259)
T 3sir_A 86 SDCILVAILSHGEMG-------------YIYAKDT----QYKLDNIWSFFTANHCPSLAGKPK-LFFIQACQGDRLDGGV 147 (259)
T ss_dssp EEEEEEEEEECTTCC-------------CCCCTTH----HHHHHHTTGGGSTTTCGGGSSSCE-EEEEEEETTSCEEC--
T ss_pred CCEEEEEEecCCCCC-------------eEEeCCC----cEEHHHHHHHhhhccCccccCCCC-EEEEecCCCCcccCCc
Confidence 799999999999872 4778873 2444444444321 1222345 5999999976543221
Q ss_pred hhhccccccccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcCC-CCCHHHHHHHHH
Q 020918 195 YVYNKYQMTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHP-GLSYGDLLDLIY 273 (320)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~g-~vt~~~L~~~v~ 273 (320)
.... .. ...................++..|+.++.+|+... ..+|+|+++|++.|+..+ ...+.+|+..|+
T Consensus 148 ~~~~--~~-~~~dg~~~~~~~ip~~aD~Li~yST~pG~vs~r~~-----~~GS~fiq~L~~~l~~~~~~~dl~~ilt~V~ 219 (259)
T 3sir_A 148 TMQR--SQ-TETDGDSSMSYKIPVHADFLIAYSTVPGFYSWRNT-----TRGSWFMQSLCAELAANGKRLDILTLLTFVC 219 (259)
T ss_dssp ------------------CEECCCCTTEEEEEEEECCSCCCSSC-----CCSCHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred cccc--Cc-ccccCcccccccCCCCCCEEEEEECCCCeEeecCC-----CCCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 1000 00 00000000001111222356677888999998764 357999999999999854 689999999999
Q ss_pred HHHHh-hhhcccccchhhhhhhhcCCCCCccccccccccccC
Q 020918 274 ERIEE-VKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVY 314 (320)
Q Consensus 274 ~~v~~-~~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~~ 314 (320)
++|.. ++...| .......+.|.||..++..-++|
T Consensus 220 ~~V~~~~~s~~~-------~~~~~~~~kQ~P~~~stLtk~ly 254 (259)
T 3sir_A 220 QRVAVDFESCTP-------DTPEMHQQKQIPCITTMLTRILR 254 (259)
T ss_dssp HHHHTTC---------------------CCCEEEECCSSBCC
T ss_pred HHHHHHhcccCC-------cccccCCceEeeEeEEeeceEEE
Confidence 99984 222111 10112466799999988665554
No 12
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=99.78 E-value=2.6e-17 Score=150.67 Aligned_cols=230 Identities=14% Similarity=0.076 Sum_probs=152.4
Q ss_pred CCCCeEEEEEEec-CCC--CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhC-
Q 020918 41 SRPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDC- 116 (320)
Q Consensus 41 ~~~~~~ALlIGi~-y~~--~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~- 116 (320)
..++.+||||++. |.. .+.++.|+.+|++.|+++|+ .+||. |.+..| +|..+|+++|+++.++.
T Consensus 18 ~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~h 85 (277)
T 1nw9_B 18 MEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFS-SLHFM---VEVKGD--------LTAKKMVLALLELARQDH 85 (277)
T ss_dssp CSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHHSCC
T ss_pred CCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEcC--------CCHHHHHHHHHHHHHhhc
Confidence 3568999999998 764 47899999999999999996 79996 677777 49999999999998764
Q ss_pred CCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCCCCCcCc
Q 020918 117 RKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILD 192 (320)
Q Consensus 117 ~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~Sg~~~~ 192 (320)
...|.+++||.|||...... +.+..+++.|. ..+.-++|...+.. .+....| ++|||||+......
T Consensus 86 ~~~D~~vv~ilSHG~~~~~~------~~~g~iy~~D~---~~v~l~~i~~~f~~~~CpsL~gKPK-lffiQACRG~~~d~ 155 (277)
T 1nw9_B 86 GALDCCVVVILSHGCQASHL------QFPGAVYGTDG---CPVSVEKIVNIFNGTSCPSLGGKPK-LFFIQACGGEQKDH 155 (277)
T ss_dssp TTCSEEEEEEEEEEECCCCS------SSCCEEECTTS---CEEEHHHHHHTTCTTTCGGGTTSCE-EEEEEEEC------
T ss_pred ccCCeEEEEEeCCCCccccc------cCCCcEEecCC---ceeeHHHHHHHhcccCChhHcCCCc-EEEEeccCCCcccC
Confidence 55799999999999885421 11126778873 23555667665532 1223345 59999999765421
Q ss_pred chhhhccccc------cccCCCC-----------CccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHH
Q 020918 193 LEYVYNKYQM------TWEDNRP-----------PSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAE 255 (320)
Q Consensus 193 ~~~~~~~~~~------~~~~~~~-----------~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~ 255 (320)
.......... ..+.... +..........-.++..|+.++.+||... ..+++|+++|++
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~aD~Li~ysT~pG~vs~R~~-----~~GS~fiq~L~~ 230 (277)
T 1nw9_B 156 GFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRDP-----KSGSWYVETLDD 230 (277)
T ss_dssp ---------------------CBCCC------------CCCCCSCSEEEEEECCCCBSSTTCT-----TSCBHHHHHHHH
T ss_pred CceeccCCcccccccccccccccccccccccccccccccccCCCCCEEEEEcCCCCeEEEcCC-----CCCcHHHHHHHH
Confidence 1110000000 0000000 00011111223356677888999998754 357999999999
Q ss_pred HHhcC-CCCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCCCccccccccccccC
Q 020918 256 IVNKH-PGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVY 314 (320)
Q Consensus 256 ~L~~~-g~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~~ 314 (320)
.|+.. +...+.+++..|++.|... ..+.|.||..++..-++|
T Consensus 231 ~l~~~~~~~dl~~ilt~V~~~V~~~-----------------~~~kQ~P~~~stL~k~ly 273 (277)
T 1nw9_B 231 IFEQWAHSEDLQSLLLRVANAVSVK-----------------GIYKQMPGCFNFLRKKLF 273 (277)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHTT-----------------CCSCCCCCCEECCSSBCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhhc-----------------cCccCcccceeeeceeEe
Confidence 99984 5789999999999999742 456799999888655443
No 13
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=99.77 E-value=3.1e-17 Score=149.97 Aligned_cols=231 Identities=13% Similarity=0.120 Sum_probs=156.6
Q ss_pred CCCCeEEEEEEec-CCC--CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-C
Q 020918 41 SRPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-C 116 (320)
Q Consensus 41 ~~~~~~ALlIGi~-y~~--~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~-~ 116 (320)
..++.+||||++. |.. .+.++.|+.+|++.|+++|+ .+||. |.+..| +|..+|.++|.++.+. .
T Consensus 18 ~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h 85 (278)
T 3od5_A 18 HRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND--------LKAEELLLKIHEVSTVSH 85 (278)
T ss_dssp SSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHSCC
T ss_pred CCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhcc
Confidence 3478999999999 764 47899999999999999996 79996 677777 4999999999998664 4
Q ss_pred CCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCCCCCcCc
Q 020918 117 RKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILD 192 (320)
Q Consensus 117 ~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~Sg~~~~ 192 (320)
...|.++++|.|||... ++++.|.. +.-++|...+.. .+....+ ++|||||+......
T Consensus 86 ~~~d~~vv~ilSHG~~g-------------~i~g~D~~----v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~~~ 147 (278)
T 3od5_A 86 ADADCFVCVFLSHGEGN-------------HIYAYDAK----IEIQTLTGLFKGDKCHSLVGKPK-IFIIQACRGNQHDV 147 (278)
T ss_dssp TTBSCEEEEEESCEETT-------------EEECSSSE----EEHHHHHHTTSTTTCGGGTTSCE-EEEEESCCSSBCBC
T ss_pred cCCCEEEEEEECCCCCC-------------EEEEeCCe----EEHHHHHHHhccccChhhcCCCc-EEEEecCCCCcccC
Confidence 56799999999999852 68898843 666777776532 1223345 59999999765432
Q ss_pred chhhhcc-cc--ccccCC---CCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCH
Q 020918 193 LEYVYNK-YQ--MTWEDN---RPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSY 265 (320)
Q Consensus 193 ~~~~~~~-~~--~~~~~~---~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~ 265 (320)
....... +. ..+... ...............++..|+.++.+||... ..+++|+++|++.|+.. ....+
T Consensus 148 g~~~~~~~~~~~~~l~~~~~~~~~~~~~~iP~~aD~Li~yST~pG~vs~R~~-----~~GS~fIq~L~~~l~~~~~~~dl 222 (278)
T 3od5_A 148 PVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRET-----VNGSWYIQDLCEMLGKYGSSLEF 222 (278)
T ss_dssp EECCC---------------------CCCEETTTTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCH
T ss_pred CeecccccccccccccccccccccccccccCCCCCeEEEEeCCCCeEEecCC-----CCCcHHHHHHHHHHHhhCCCCCH
Confidence 1110000 00 000000 0000000111222356677888999998764 35799999999999985 46899
Q ss_pred HHHHHHHHHHHHhhhhc-ccccchhhhhhhhcCCCCCccccccccccccC
Q 020918 266 GDLLDLIYERIEEVKKN-DCLVNTNFLRRFFKDKLSQKPTLSSSGRFEVY 314 (320)
Q Consensus 266 ~~L~~~v~~~v~~~~~q-~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~~ 314 (320)
.+|+..|+++|...... .+ +. -...+.|.||..++..-++|
T Consensus 223 ~~ilt~Vn~~V~~~~~~~~~-------~~-~~~~~kQ~P~~~stLtk~ly 264 (278)
T 3od5_A 223 TELLTLVNRKVSQRRVDFCK-------DP-SAIGKKQVPCFASMLTKKLH 264 (278)
T ss_dssp HHHHHHHHHHHHHCCCCCCS-------SG-GGTTCBCCCEEEECCCSBCC
T ss_pred HHHHHHHHHHHHHHhhhcCC-------Cc-cccCceEcceeEEecceEEE
Confidence 99999999999865321 11 00 01256799999877654443
No 14
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=99.77 E-value=3.5e-17 Score=149.16 Aligned_cols=225 Identities=15% Similarity=0.084 Sum_probs=151.1
Q ss_pred CCCCeEEEEEEec-CCC---------CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHH
Q 020918 41 SRPSRRAVLCGVS-YNK---------GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALE 110 (320)
Q Consensus 41 ~~~~~~ALlIGi~-y~~---------~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~ 110 (320)
..++.+||||++. |.. .+.++.|+.+|++.|+++|+ .+||. |.+..| +|..+|.++|+
T Consensus 14 ~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~ 81 (271)
T 3h11_B 14 SKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD--------CTVEQIYEILK 81 (271)
T ss_dssp SSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHH
T ss_pred CCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHH
Confidence 3468999999998 654 26788999999999999996 79996 677777 49999999999
Q ss_pred HHHHh-CCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCC
Q 020918 111 WLVND-CRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDAC 185 (320)
Q Consensus 111 ~l~~~-~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC 185 (320)
++.+. ....|.++++|.+||... ++++.|.. .+.-++|...+.. .+....+ ++|||||
T Consensus 82 ~~~~~~h~~~d~~v~~ilSHG~~g-------------~i~g~D~~---~v~l~~I~~~f~~~~CpsL~gKPK-lffiQAC 144 (271)
T 3h11_B 82 IYQLMDHSNMDCFICCILSHGDKG-------------IIYGTDGQ---EAPIYELTSQFTGLKCPSLAGKPK-VFFIQAC 144 (271)
T ss_dssp HHHHSCCTTCSCEEEEEESCEETT-------------EEECTTSC---EEEHHHHHGGGSTTTCGGGTTSCE-EEEEESC
T ss_pred HHHHhcCCCCCEEEEEEEcCCcCC-------------EEEecCCC---eecHHHHHHHhhhccChhhcCCcc-EEEEecc
Confidence 99875 356799999999999852 68899842 3455666665532 1223345 5999999
Q ss_pred CCCCcCcchhhhcccc--ccccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-C-
Q 020918 186 HSGTILDLEYVYNKYQ--MTWEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-P- 261 (320)
Q Consensus 186 ~Sg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g- 261 (320)
+............... ...+.................++..|+.++.+||... ..+++|+++|++.|+.. +
T Consensus 145 RG~~~~~gv~~~~~~~~~~~~e~d~~~~~~~~iP~~aD~Li~yST~pG~vs~R~~-----~~GS~fIq~L~~~l~~~~~~ 219 (271)
T 3h11_B 145 QGDNYQKGIPVETASEEQPYLEMALSSPQTRYIPDEADFLLGMATVNNCVSYRNP-----AEGTWYIQSLCQSLRERCPR 219 (271)
T ss_dssp CSSBCC----------------------CCCCSCSSSSEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHGGG
T ss_pred CCCcccCCceeccCCccccccccccccccccccCCCCceEEEEECCCCceeecCC-----CCCcHHHHHHHHHHHHhCCC
Confidence 9775532111000000 0000000000001111122356677888999998764 35799999999999985 4
Q ss_pred CCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCCCccccccccccc
Q 020918 262 GLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFE 312 (320)
Q Consensus 262 ~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~ 312 (320)
...+.+|+..|+++|...+. -.+.+.|.||..++..-.
T Consensus 220 ~~dl~~ilt~Vn~~V~~~~~-------------~~~~~kQ~P~~~stLtk~ 257 (271)
T 3h11_B 220 GDDILTILTEVNYEVSNKDD-------------KKNMGKQMPQPTFTLRKK 257 (271)
T ss_dssp TCCHHHHHHHHHHHHHTC-------------------CCCCCEEEECCCSB
T ss_pred CCCHHHHHHHHHHHHhhccc-------------CCCCCEEeeEEEEEeeeE
Confidence 68999999999999986431 024567999998876433
No 15
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=99.73 E-value=2.6e-16 Score=146.28 Aligned_cols=207 Identities=11% Similarity=0.068 Sum_probs=138.5
Q ss_pred CCeEEEEEEec-CCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhC-C-CC
Q 020918 43 PSRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDC-R-KG 119 (320)
Q Consensus 43 ~~~~ALlIGi~-y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~-~-~~ 119 (320)
++.+||||++. |...-.++.|+.+|++.|+++|+ .+||. |.+..| +|..+|+++|+++.+.. . ..
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~~h~~~~ 127 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQ-ELNFT---IFPYGN--------VNQDQFFKLLTMVTSSSYVQNT 127 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHH-HTTEE---EEEECS--------CCHHHHHHHHHHHHTSHHHHTC
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEccC--------CCHHHHHHHHHHHHHHhhcCCC
Confidence 78999999998 76412889999999999999996 79996 777777 49999999999998754 3 68
Q ss_pred CEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCCCCCcCcchh
Q 020918 120 DSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTILDLEY 195 (320)
Q Consensus 120 D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~Sg~~~~~~~ 195 (320)
|.+++||.|||....+ ..++++.|.. .+.-++|...+.. .+....+ ++|||||+.........
T Consensus 128 D~~vv~ilSHG~~~~g---------~g~i~g~D~~---~v~l~~I~~~f~~~~CpsL~gKPK-lffiQACRG~~~d~g~~ 194 (316)
T 2fp3_A 128 ECFVMVLMTHGNSVEG---------KEKVEFRDGS---VVDMQKIKDHFQTAKCPYLVNKPK-VLMFPFARGDEYDLGHP 194 (316)
T ss_dssp SCEEEEEESCEECCTT---------CCEEECTTSC---EEEHHHHHHTTSTTTCGGGTTSCE-EEEESCC----------
T ss_pred CEEEEEEccCCCccCC---------CCEEEeecCc---EEeHHHHHHHhccccChhhcCCce-EEEEecCCCCcccCCce
Confidence 9999999999998643 1279999953 3555677766532 1223345 59999999765422111
Q ss_pred hhcccc-----ccc---cCC--CC--CccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CC
Q 020918 196 VYNKYQ-----MTW---EDN--RP--PSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PG 262 (320)
Q Consensus 196 ~~~~~~-----~~~---~~~--~~--~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~ 262 (320)
...... ... ... .. .............++..|+.++.+||... ..+++|+++|++.|+.. +.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~iP~~aD~Li~yST~pG~vS~R~~-----~~GSwFIq~L~~~l~~~~~~ 269 (316)
T 2fp3_A 195 KNQGNLMEPVYTAQEEKWPDTQTEGIPSPSTNVPSLADTLVCYANTPGYVTHRDL-----DTGSWYIQKFCQVMADHAHD 269 (316)
T ss_dssp -----------------------------CCCCCCCCSEEEEECCCSCCCBTTTB-----CHHHHHHHHHHHHHHHHTTT
T ss_pred eccCcccccccccccccccccccccccccccccCCCCCEEEEEeCCCCceeccCC-----CCCCHHHHHHHHHHHHHCCC
Confidence 000000 000 000 00 00001111222356677888999998754 35799999999999984 56
Q ss_pred CCHHHHHHHHHHHHHhh
Q 020918 263 LSYGDLLDLIYERIEEV 279 (320)
Q Consensus 263 vt~~~L~~~v~~~v~~~ 279 (320)
..+.+|+..|+++|...
T Consensus 270 ~dl~~ilt~Vn~~V~~~ 286 (316)
T 2fp3_A 270 TDLEDILKKTSEAVGNK 286 (316)
T ss_dssp SCHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 89999999999999864
No 16
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=99.69 E-value=1.7e-16 Score=135.57 Aligned_cols=147 Identities=22% Similarity=0.350 Sum_probs=110.6
Q ss_pred cccCCCCccchhhHHhhhhhcCccccccCCCCCCCCCCCCCCCeEEEEEEec-CCCCCCCCCChHHHHHHHHHHHHHhcC
Q 020918 2 QICPRGNFGCNIMKKIRNDEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFK 80 (320)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ALlIGi~-y~~~~~~L~~~~~Da~~m~~~L~~~~G 80 (320)
..||.+.|-. |++.+.+++||. ...+.++++|||||+. |. .+.++.|+.+|++.|+++|+ .+|
T Consensus 15 ~~c~~~~~~~--~~~~~~~~~Y~m------------~~~~~~~g~ALIInn~~f~-~~~~R~G~~~Da~~L~~~f~-~Lg 78 (178)
T 2h54_A 15 KLCSLEEAQR--IWKQKSAEIYPI------------MDKSSRTRLALIICNEEFD-SIPRRTGAEVDITGMTMLLQ-NLG 78 (178)
T ss_dssp CCCCHHHHHH--HC---CCSBCCC------------CCTTTCCCEEEEEECCCCS-SSCCCTTHHHHHHHHHHHHH-HTT
T ss_pred eeCCHHHhhh--ccccCcccccCC------------CCCCCcCCEEEEEehhhcC-CCccCCCCHHHHHHHHHHHH-HCC
Confidence 4688888877 788888899887 3333468999999999 65 48899999999999999996 799
Q ss_pred CCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh--CCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCC--C
Q 020918 81 FQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND--CRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLK--E 156 (320)
Q Consensus 81 f~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~--~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~--~ 156 (320)
|. |.+..| +|..+|+++|.+|.++ ....|.+++||.|||... ++++.|... .
T Consensus 79 F~---V~~~~d--------lt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~~g-------------~i~g~D~~~~~~ 134 (178)
T 2h54_A 79 YS---VDVKKN--------LTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIRE-------------GICGKKHSEQVP 134 (178)
T ss_dssp CE---EEEEES--------CCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCBCSS-------------CEECTTCCSSSC
T ss_pred CE---EEEecC--------CCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCCCCC-------------eEEeecCCcccC
Confidence 96 677777 4999999999999863 456799999999999863 367777531 1
Q ss_pred CcccHHHHHHHHhcc----ccCCceEEEEEeCCCCCC
Q 020918 157 GMIIDNDINSIIVKP----LKEGVTLHAIVDACHSGT 189 (320)
Q Consensus 157 ~~i~~~~L~~~l~~~----~~~~~~v~~ilDcC~Sg~ 189 (320)
..+.-++|...+... +....+ ++|||||+.+.
T Consensus 135 ~~v~l~~I~~~f~~~~CpsL~gKPK-lffiqACRg~~ 170 (178)
T 2h54_A 135 DILQLNAIFNMLNTKNCPSLKDKPK-VIIIQACRGDS 170 (178)
T ss_dssp CEECHHHHHHHHSTTTCGGGTTSCE-EEEEESCSSSB
T ss_pred cEEEHHHHHHHHhhcCChhhcCCce-EEEEECCCCCC
Confidence 245666777776432 223345 59999999864
No 17
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=99.35 E-value=1.3e-11 Score=112.23 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=136.1
Q ss_pred CCCeEEEEEEecCCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHH--hCCCC
Q 020918 42 RPSRRAVLCGVSYNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVN--DCRKG 119 (320)
Q Consensus 42 ~~~~~ALlIGi~y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~--~~~~~ 119 (320)
.++.+||||.+. + +|++.|.++|+ .+||. |.+..| +|..+|.+.|.++.+ .....
T Consensus 41 ~~rG~~LIinn~--~---------~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~dh~~~ 97 (272)
T 3h11_A 41 KPLGICLIIDCI--G---------NETELLRDTFT-SLGYE---VQKFLH--------LSMHGISQILGQFACMPEHRDY 97 (272)
T ss_dssp SSSEEEEEEESS--C---------CCCSHHHHHHH-HHTEE---EEEEES--------CBHHHHHHHHHHHHTCGGGGGC
T ss_pred CcceEEEEECCc--h---------HHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHhccccCCC
Confidence 456777777653 1 59999999996 79996 677777 499999999999986 36778
Q ss_pred CEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhcc----ccCCceEEEEEeCCCCCCcC-cch
Q 020918 120 DSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKP----LKEGVTLHAIVDACHSGTIL-DLE 194 (320)
Q Consensus 120 D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~----~~~~~~v~~ilDcC~Sg~~~-~~~ 194 (320)
|.++++|.+||... ++++.|.... .+.-++|...+... +....+ ++|++||+..... +..
T Consensus 98 d~~v~~ilSHG~~g-------------~i~g~D~~~~-~v~l~~i~~~f~~~~CpsL~gKPK-lffiQACRG~~~~~~~g 162 (272)
T 3h11_A 98 DSFVCVLVSRGGSQ-------------SVYGVDQTHS-GLPLHHIRRMFMGDSCPYLAGKPK-MFFIQNYVVSEGQLENS 162 (272)
T ss_dssp SEEEEEEEEEEETT-------------EECBTSCCSS-CEEHHHHHHHHSTTTCGGGTTSCE-EEEEEEEEC--------
T ss_pred CEEEEEEEcCCCCC-------------eEEEEcCCcc-eEeHHHHHHHhccccChhhcCCCc-EEEEECCCCCCcccCCC
Confidence 99999999999842 6888885321 25567787776431 222345 5999999964211 110
Q ss_pred hhhcccccc---ccCCCCCccccccCCCCcEEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcCCCCCHHHHHHH
Q 020918 195 YVYNKYQMT---WEDNRPPSGARKATDGGLAICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHPGLSYGDLLDL 271 (320)
Q Consensus 195 ~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~g~vt~~~L~~~ 271 (320)
.....+... .................-.++..|+.++-.||... ..+++|.++|++.|+......+.+|+..
T Consensus 163 ~~~~~D~~~~~~~~~~~~~~~~~~iP~~aDfL~~yST~pg~~s~R~~-----~~GSwfIq~Lc~~l~~~~~~dl~~ilt~ 237 (272)
T 3h11_A 163 SLLEVDGPAMKNVEFKAQKRGLCTVHREADFFWSLCTADMSLLEQSH-----SSPSLYLQCLSQKLRQERKRPLLDLHIE 237 (272)
T ss_dssp ------------------------CCTTCSEEEEEEEEEGGGTSSTT-----CCCCHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred cceeccCcccccccccccccccccCCCCCCEEEEEeccCCeEEEEeC-----CCCCHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 000001000 00000000001111122345566777888887653 2579999999999998556799999999
Q ss_pred HHHHHHhhhhcccccchhhhhhhhcCCCCCcccccccccccc
Q 020918 272 IYERIEEVKKNDCLVNTNFLRRFFKDKLSQKPTLSSSGRFEV 313 (320)
Q Consensus 272 v~~~v~~~~~q~~~~~~~~~~~~~~~~~~q~P~~~~~~~~~~ 313 (320)
|+++|.+++.+.+ .+..|.|+..++..-.+
T Consensus 238 Vn~~V~~~~~~~~------------~~~~~~p~~~stLtkkl 267 (272)
T 3h11_A 238 LNGYMYDWNSRVS------------AKEKYYVWLQHTLRKKL 267 (272)
T ss_dssp HHHHHHHHHTTSC------------GGGCEEEEEEECCCSBC
T ss_pred HHHHHHHhhccCC------------CcceEeeEeeeeeeeEE
Confidence 9999987643211 22345677776654333
No 18
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=99.12 E-value=1.4e-09 Score=91.63 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=93.4
Q ss_pred CCCeEEEEEEec-CCC--CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHH--hC
Q 020918 42 RPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVN--DC 116 (320)
Q Consensus 42 ~~~~~ALlIGi~-y~~--~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~--~~ 116 (320)
.++.+||||.+. |.. .+.+..|+..|++.|.++|+ .+||. |.+..| +|..+|.+.|.++.+ ..
T Consensus 31 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~dh 98 (167)
T 1pyo_A 31 RPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFK-LLGYD---VHVLCD--------QTAQEMQEKLQNFAQLPAH 98 (167)
T ss_dssp SSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHTCGGG
T ss_pred CCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHhhhhhhc
Confidence 468999999998 654 36789999999999999996 79996 677777 499999999999987 34
Q ss_pred CCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCCCCCc
Q 020918 117 RKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGTI 190 (320)
Q Consensus 117 ~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~Sg~~ 190 (320)
...|.++++|.+||... ++++.|. ..+.-++|...+.. .+....+ ++|++||+....
T Consensus 99 ~~~dc~vv~ilSHG~~g-------------~i~g~D~---~~v~l~~i~~~F~~~~CpsL~gKPK-lffiQACRG~~~ 159 (167)
T 1pyo_A 99 RVTDSCIVALLSHGVEG-------------AIYGVDG---KLLQLQEVFQLFDNANCPSLQNKPK-MFFIQACRGDET 159 (167)
T ss_dssp GTSSEEEEEEESCEETT-------------EEECTTS---CEEEHHHHHHHTSTTTCGGGTTSCE-EEEEESCSSSBC
T ss_pred cCCCEEEEEeCCCCCCC-------------eEEEeCC---CEEcHHHHHHHhcccCChhHcCCCe-EEEEECCCCCCC
Confidence 56799999999999862 6888884 23555677776642 1223345 599999997533
No 19
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=99.01 E-value=4e-09 Score=86.98 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=91.2
Q ss_pred CCCeEEEEEEec-CCC--CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhC-C
Q 020918 42 RPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDC-R 117 (320)
Q Consensus 42 ~~~~~ALlIGi~-y~~--~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~-~ 117 (320)
.++.+||||.+. |.. .+.+..|+..|++.|.++|+ .+||. |.+..| +|..+|.+.|.++.+.- .
T Consensus 14 ~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~dh~ 81 (146)
T 2dko_A 14 PEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHS 81 (146)
T ss_dssp SEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHSCCT
T ss_pred CCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHHhhcC
Confidence 457899999887 653 36788999999999999996 79996 677777 49999999999998763 4
Q ss_pred CCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhcc----ccCCceEEEEEeCCCCCCc
Q 020918 118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKP----LKEGVTLHAIVDACHSGTI 190 (320)
Q Consensus 118 ~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~----~~~~~~v~~ilDcC~Sg~~ 190 (320)
..|.+++++.+||... ++++.|. .+.-++|...+... +....+ ++|++||+....
T Consensus 82 ~~dc~vv~ilSHG~~g-------------~i~g~D~----~~~l~~i~~~F~~~~CpsL~gKPK-lffiQACRG~~~ 140 (146)
T 2dko_A 82 KRSSFVCVLLSHGEEG-------------IIFGTNG----PVDLKKITNFFRGDRCRSLTGKPK-LFIIQACRGTEL 140 (146)
T ss_dssp TEEEEEEEEESCEETT-------------EEEETTE----EEEHHHHHHTTSTTTCGGGTTSCE-EEEEESCCSSBC
T ss_pred CCCeEEEEeccCCCCC-------------EEEEeCC----cEeHHHHHHHhccccChhhcCCCe-EEEEECCCCCCC
Confidence 5699999999999842 6888884 35556676655321 223345 599999996533
No 20
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=98.95 E-value=1.1e-08 Score=86.05 Aligned_cols=120 Identities=16% Similarity=0.155 Sum_probs=91.3
Q ss_pred CCCeEEEEEEec-CCC---------CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHH
Q 020918 42 RPSRRAVLCGVS-YNK---------GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEW 111 (320)
Q Consensus 42 ~~~~~ALlIGi~-y~~---------~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~ 111 (320)
.++.+||||.+. |.. .+.+..|+..|++.|.++|+ .+||. |.+..| +|..+|.+.|.+
T Consensus 21 ~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~ 88 (164)
T 1qtn_A 21 KPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD--------CTVEQIYEILKI 88 (164)
T ss_dssp SSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHH
T ss_pred CCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHH
Confidence 457899999887 553 36789999999999999996 79996 677777 499999999999
Q ss_pred HHHh-CCCCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCC
Q 020918 112 LVND-CRKGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACH 186 (320)
Q Consensus 112 l~~~-~~~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~ 186 (320)
+.+. ....|.+++++.+||... .+++.|. ..+.-++|...+.. .+....+ ++|+.||+
T Consensus 89 ~~~~dh~~~dc~vv~ilSHG~~g-------------~i~g~D~---~~v~i~~i~~~F~~~~CpsL~gKPK-lFfiQACR 151 (164)
T 1qtn_A 89 YQLMDHSNMDCFICCILSHGDKG-------------IIYGTDG---QEAPIYELTSQFTGLKCPSLAGKPK-VFFIQACQ 151 (164)
T ss_dssp HHHSCCTTCSCEEEEEESCEETT-------------EEECTTS---CEEEHHHHHGGGSTTTCGGGTTSCE-EEEEESCS
T ss_pred HHHhhccCCCEEEEEeCCCCCCC-------------EEEeeCC---CEeeHHHHHHHhccccChhhcCCCe-EEEEECCC
Confidence 9765 356799999999999852 5888884 23455667665532 1223345 59999999
Q ss_pred CCCc
Q 020918 187 SGTI 190 (320)
Q Consensus 187 Sg~~ 190 (320)
....
T Consensus 152 G~~~ 155 (164)
T 1qtn_A 152 GDNY 155 (164)
T ss_dssp SSBC
T ss_pred CCCc
Confidence 7533
No 21
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=98.81 E-value=5.8e-08 Score=82.42 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=87.9
Q ss_pred CCCeEEEEEEec-CCC--CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CC
Q 020918 42 RPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CR 117 (320)
Q Consensus 42 ~~~~~ALlIGi~-y~~--~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~-~~ 117 (320)
.++.+||||.+. |.. .+.+..|+..|++.|.++|+ .+||. |.+..| +|..+|.+.|.++.+. ..
T Consensus 42 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~dh~ 109 (179)
T 3p45_A 42 RRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND--------LKAEELLLKIHEVSTVSHA 109 (179)
T ss_dssp SBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHhhhhcC
Confidence 467889999998 653 57889999999999999996 79996 677777 4999999999998653 34
Q ss_pred CCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCCCCC
Q 020918 118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGT 189 (320)
Q Consensus 118 ~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~Sg~ 189 (320)
..|.+++++.+||... .++..|.. +.-++|...+.. .+....+ ++|+.||+...
T Consensus 110 ~~dc~vvvilSHG~~g-------------~I~g~D~~----v~l~~I~~~F~~~~CpsL~gKPK-lFfIQACRG~~ 167 (179)
T 3p45_A 110 DADCFVCVFLSHGEGN-------------HIYAYDAK----IEIQTLTGLFKGDKCHSLVGKPK-IFIIQACRGNQ 167 (179)
T ss_dssp TBSCEEEEEESCEETT-------------EEECSSSE----EEHHHHHGGGSGGGCGGGTTSCE-EEEEECC----
T ss_pred CCCEEEEEEeccCCCC-------------EEEEECCE----EEHHHHHHhcccccChhhCCCCc-EEEEECCCCCC
Confidence 5699999999999842 58888832 555677766532 1223345 59999999653
No 22
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=98.80 E-value=3.9e-08 Score=83.14 Aligned_cols=118 Identities=17% Similarity=0.217 Sum_probs=88.6
Q ss_pred CCCeEEEEEEec-CCC--CCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHh-CC
Q 020918 42 RPSRRAVLCGVS-YNK--GKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVND-CR 117 (320)
Q Consensus 42 ~~~~~ALlIGi~-y~~--~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~-~~ 117 (320)
.++.+||||.+. |.. .+.+..|+..|++.|.++|+ .+||. |.+..| +|..+|.+.|.++.+. ..
T Consensus 42 ~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LgF~---V~v~~d--------lt~~em~~~l~~~s~~dh~ 109 (173)
T 2ql9_A 42 EKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDHT 109 (173)
T ss_dssp SEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhcc
Confidence 356788888887 653 36778999999999999996 79996 677777 4999999999998765 34
Q ss_pred CCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhc----cccCCceEEEEEeCCCCCC
Q 020918 118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVK----PLKEGVTLHAIVDACHSGT 189 (320)
Q Consensus 118 ~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~----~~~~~~~v~~ilDcC~Sg~ 189 (320)
..|.+++++.+||... .++..|. .+.-++|...+.. .+....+ ++|+.||+...
T Consensus 110 ~~dc~vvvilSHG~~g-------------~I~g~D~----~~~i~~I~~~F~~~~CpsL~gKPK-lFfIQACRG~~ 167 (173)
T 2ql9_A 110 NAACFACILLSHGEEN-------------VIYGKDG----VTPIKDLTAHFRGDRCKTLLEKPK-LFFIQACRGTE 167 (173)
T ss_dssp TEEEEEEEEESCEETT-------------EEEETTE----EEEHHHHHGGGSTTTCGGGTTSCE-EEEEESCCSSB
T ss_pred CCCeEEEeecCCCCCC-------------EEEEcCC----cEEHHHHHHHcCcccChhHcCCCe-EEEEECCCCCC
Confidence 5699999999999852 5888884 3555666655432 1222345 59999999653
No 23
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=94.10 E-value=0.25 Score=37.49 Aligned_cols=80 Identities=10% Similarity=0.021 Sum_probs=56.9
Q ss_pred EEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCC
Q 020918 222 AICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLS 300 (320)
Q Consensus 222 ~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~ 300 (320)
.++..|+.++-+|+-.. ..+++|-++|++.|++. ....+.+|+..|.++|.......+.. ....+..
T Consensus 19 fL~~yST~pG~vS~R~~-----~~GSwfIq~Lc~~l~~~~~~~dl~~ilT~Vn~~V~~~~~~~~~~-------~~~~~~k 86 (103)
T 2dko_B 19 FLYAYSTAPGYYSWRNS-----KDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFD-------ATFHAKK 86 (103)
T ss_dssp EEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCSS-------GGGTTCB
T ss_pred EEEEEeCCCCcEeEEcC-----CCCCeeHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhcccCCC-------CccCCce
Confidence 55667888898998553 24799999999999974 46899999999999998762211100 0125667
Q ss_pred Ccccccccccccc
Q 020918 301 QKPTLSSSGRFEV 313 (320)
Q Consensus 301 q~P~~~~~~~~~~ 313 (320)
|.|++.++..-.+
T Consensus 87 Q~P~~~stLtK~l 99 (103)
T 2dko_B 87 QIPCIVSMLTKEL 99 (103)
T ss_dssp CCCEEEECCSSBC
T ss_pred EeeeeEEEEceeE
Confidence 9999887654333
No 24
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=93.66 E-value=0.33 Score=37.86 Aligned_cols=76 Identities=9% Similarity=0.025 Sum_probs=53.8
Q ss_pred EEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCC
Q 020918 222 AICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLS 300 (320)
Q Consensus 222 ~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~ 300 (320)
.++..|+.++-+||-.. ..+++|-++|++.|++. ....+.+|+..|.++|.......+. .....+..
T Consensus 18 fLi~yST~pG~vS~R~~-----~~GSwFIQ~Lc~vl~~~~~~~dl~~ilT~Vn~~Va~~~es~~~-------~~~~~~~K 85 (118)
T 2xzd_B 18 FLYAYSTAPGYYSWRNS-----KDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSF-------DATFHAKK 85 (118)
T ss_dssp EEEEESSCTTBCCCEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCCS-------SGGGTTCB
T ss_pred EEEEEeCCCCCEeeEeC-----CCCCccHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhccccC-------CCccCCce
Confidence 45566888898998553 24799999999999974 4689999999999999875211100 00124556
Q ss_pred Ccccccccc
Q 020918 301 QKPTLSSSG 309 (320)
Q Consensus 301 q~P~~~~~~ 309 (320)
|.|++.++.
T Consensus 86 Q~P~~~stL 94 (118)
T 2xzd_B 86 QIPCIVSML 94 (118)
T ss_dssp CCCEEEECC
T ss_pred EeeeeEEEe
Confidence 888876654
No 25
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=93.59 E-value=0.37 Score=36.09 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=55.4
Q ss_pred EEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCC
Q 020918 222 AICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLS 300 (320)
Q Consensus 222 ~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~ 300 (320)
.++..|+.++-.|+-.. ..+++|-++|++.|++. ....+.+|+..|.++|........ ......+..
T Consensus 13 fL~~yST~pG~~S~R~~-----~~GSwfIq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~~~-------~~~~~~~~k 80 (97)
T 2ql9_B 13 FLFAYSTVPGYYSWRSP-----GRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQS-------DDPHFHEKK 80 (97)
T ss_dssp EEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCCC-------SSGGGTTCB
T ss_pred EEEEEeCCCCcEeeecC-----CCCCeeHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhcccc-------CCcccCCce
Confidence 45667888888997543 25799999999999974 468999999999999987522110 000124567
Q ss_pred Ccccccccccc
Q 020918 301 QKPTLSSSGRF 311 (320)
Q Consensus 301 q~P~~~~~~~~ 311 (320)
|.|+..++..-
T Consensus 81 Q~P~~~stLtk 91 (97)
T 2ql9_B 81 QIPCVVSMLTK 91 (97)
T ss_dssp CCCEEEECCSS
T ss_pred EeeeeEEEEce
Confidence 99998766443
No 26
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=93.00 E-value=0.37 Score=36.69 Aligned_cols=77 Identities=14% Similarity=0.108 Sum_probs=54.3
Q ss_pred EEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCC
Q 020918 222 AICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLS 300 (320)
Q Consensus 222 ~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~ 300 (320)
.++..|+.++-+|+-.. ..+++|-++|++.|++. ....+.+|+..|.++|.......+ +.. .....
T Consensus 17 fL~~yST~pG~~S~R~~-----~~GSwFIq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~~~-------~~~-~~~~k 83 (105)
T 1pyo_B 17 MICGYACLKGTAAMRNT-----KRGSWYIEALAQVFSERACDMHVADMLVKVNALIKDREGYAP-------GTE-FHRCK 83 (105)
T ss_dssp EEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHTCCCCCT-------TST-TTTCB
T ss_pred EEEEEeCCCCcEEEecC-----CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhhccCC-------Ccc-ccCce
Confidence 45566888888887543 24799999999999984 578999999999999986532110 000 13446
Q ss_pred Ccccccccccc
Q 020918 301 QKPTLSSSGRF 311 (320)
Q Consensus 301 q~P~~~~~~~~ 311 (320)
|.|+..++..-
T Consensus 84 Q~P~~~stLtK 94 (105)
T 1pyo_B 84 EMSEYCSTLCR 94 (105)
T ss_dssp CCCEEEECCCS
T ss_pred ECCEeEEeece
Confidence 88988776543
No 27
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=92.86 E-value=0.25 Score=36.39 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=51.8
Q ss_pred EEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCC
Q 020918 222 AICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKH-PGLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLS 300 (320)
Q Consensus 222 ~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~-g~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~ 300 (320)
.++..|+.++-.|+-.. ..+++|-++|++.|++. ....+.+|+..|...|.. .+...
T Consensus 11 fL~~yST~pG~~S~R~~-----~~GSwfIq~Lc~~l~~~~~~~dl~~il~~V~~~v~~-----------------~~~~k 68 (88)
T 1sc3_B 11 FIAFCSSTPDNVSWRHP-----TMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQ-----------------PDGRA 68 (88)
T ss_dssp EEEEESSCTTBCCCEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTCS-----------------CCSSC
T ss_pred EEEEEeCCCCCEeeEcC-----CCCCHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHhc-----------------cCCce
Confidence 45567888898998654 25799999999999974 468999999888888753 25567
Q ss_pred Cccccc-cccccc
Q 020918 301 QKPTLS-SSGRFE 312 (320)
Q Consensus 301 q~P~~~-~~~~~~ 312 (320)
|.|+.. ++..-.
T Consensus 69 Q~P~~~~stLtk~ 81 (88)
T 1sc3_B 69 QMPTTERVTLTRC 81 (88)
T ss_dssp CCCEEESCCCCSB
T ss_pred EcCEeEcccceeE
Confidence 888875 554433
No 28
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=92.49 E-value=0.37 Score=37.48 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=55.0
Q ss_pred EEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCCC
Q 020918 222 AICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHP-GLSYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKLS 300 (320)
Q Consensus 222 ~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~g-~vt~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~~ 300 (320)
.++..|+.++-.||-.. ..+++|-++|++.|+..+ ...+.+|+..|.++|.+.+...+ +. ..+...
T Consensus 18 fL~~yST~pGyvS~R~~-----~~GSwFIQ~Lc~vl~~~~~~~dLl~ilT~Vn~~Va~~~~~~~-------~~-~~~~~K 84 (117)
T 3rjm_B 18 MICGYACLKGTAAMRNT-----KRGSWYIEALAQVFSERACDMHVADMLVKVNALIKDREGYAP-------GT-EFHRCK 84 (117)
T ss_dssp EEEEESSCTTCCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCCCCT-------TS-TTTTCB
T ss_pred EEEEEcCCCCeECeeec-----CCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccCC-------CC-ccCCeE
Confidence 56677888999998553 247999999999999864 67999999999999996542111 00 024567
Q ss_pred Cccccccccc
Q 020918 301 QKPTLSSSGR 310 (320)
Q Consensus 301 q~P~~~~~~~ 310 (320)
|.|++.++..
T Consensus 85 QmP~~~stLt 94 (117)
T 3rjm_B 85 EMSEYCSTLC 94 (117)
T ss_dssp CCCEEEECCC
T ss_pred EeeEEEEeEC
Confidence 8888776543
No 29
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=92.39 E-value=0.25 Score=36.90 Aligned_cols=71 Identities=11% Similarity=0.004 Sum_probs=53.3
Q ss_pred EEEEeecCCCcccccccccCCCcccchHHHHHHHHHhcCC-CC-CHHHHHHHHHHHHHhhhhcccccchhhhhhhhcCCC
Q 020918 222 AICLSACQDNQLASDTSAFTGNTMNGVMTYVLAEIVNKHP-GL-SYGDLLDLIYERIEEVKKNDCLVNTNFLRRFFKDKL 299 (320)
Q Consensus 222 ~~vlsA~~~~q~s~e~~~~~g~~~~g~FT~aLl~~L~~~g-~v-t~~~L~~~v~~~v~~~~~q~~~~~~~~~~~~~~~~~ 299 (320)
.++..|+.++-.|+-.. ..+++|-++|++.|++.+ .. .+.+|+..|.++|...... .++.
T Consensus 15 fL~~ysT~pG~~S~R~~-----~~GSwfIq~Lc~~l~~~~~~~~dl~~ilt~Vn~~V~~~~~~-------------~~~~ 76 (95)
T 1qtn_B 15 FLLGMATVNNCVSYRNP-----AEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSNKDDK-------------KNMG 76 (95)
T ss_dssp EEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHGGGTCCHHHHHHHHHHHHHHCCBT-------------TTTB
T ss_pred EEEEEeCCCCcEEEecC-----CCCcHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHhhcc-------------CCCc
Confidence 45567888888887543 247999999999999853 55 8999999999999875321 2455
Q ss_pred CCccccccccc
Q 020918 300 SQKPTLSSSGR 310 (320)
Q Consensus 300 ~q~P~~~~~~~ 310 (320)
.|.|+..++..
T Consensus 77 kQ~P~~~stLt 87 (95)
T 1qtn_B 77 KQMPQPTFTLR 87 (95)
T ss_dssp BCCCEEEECCC
T ss_pred eEeeeeEEEEc
Confidence 78998876643
No 30
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C
Probab=58.21 E-value=7.5 Score=33.37 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=31.6
Q ss_pred hhHHhhhhhcCccccccCCCCCCCCCCCCCCCeEEEEEEec-CCCCCCCCCCh
Q 020918 13 IMKKIRNDEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVS-YNKGKFRLKGT 64 (320)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ALlIGi~-y~~~~~~L~~~ 64 (320)
+.+.++.+.|+|....+=... .+|. .+.++||+|-+ |..+...|...
T Consensus 33 l~~fl~~e~i~P~~~~if~af-~tp~----~~VKVVIlGQDPYh~qA~GLaFS 80 (218)
T 2owr_A 33 VASWLLRDETSPIPDKFFIQL-KQPL----RNKRVCVCGIDPYPKDGTGVPFE 80 (218)
T ss_dssp THHHHTTSCEESCGGGTTGGG-GSCS----TTCCEEEEESSCCSSCCCSSTTC
T ss_pred HHHHHHhceeCCCHHHHHHhh-cCCH----HHeEEEEEecCCCCCCcceEEEE
Confidence 344444445999988877666 5554 47889999999 87744444433
No 31
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii}
Probab=39.14 E-value=97 Score=29.34 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=29.5
Q ss_pred CCcccHHHHHHH--HHHHHHhCCCCCEEEEEEeeCcccc
Q 020918 97 MYSPTKKNIQKA--LEWLVNDCRKGDSLVFYFSGHGLRQ 133 (320)
Q Consensus 97 ~~~pT~~~I~~a--l~~l~~~~~~~D~l~~YfSGHG~~~ 133 (320)
...|+...+..+ +-++++.++++|.|++..||=|.-.
T Consensus 98 HPvPD~~s~~Aa~~il~~~~~l~~~Dlvl~LISGGGSAL 136 (440)
T 1x3l_A 98 HPIPDEKSILGAKEALSILNRARENDIVFILISGGGSAL 136 (440)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHCCTTSEEEEEECTTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCCEEEEEecCcHHHh
Confidence 356888877755 5678889999999999999977543
No 32
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=38.88 E-value=48 Score=26.70 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEE
Q 020918 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLV 123 (320)
Q Consensus 68 a~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~ 123 (320)
...++++|+ .+|+......++.| + +.|.++|.+.++. .-|+++
T Consensus 29 ~~~l~~~l~-~~G~~v~~~~iv~D---------d-~~i~~al~~a~~~--~~DlVi 71 (164)
T 3pzy_A 29 GPIITEWLA-QQGFSSAQPEVVAD---------G-SPVGEALRKAIDD--DVDVIL 71 (164)
T ss_dssp HHHHHHHHH-HTTCEECCCEEECS---------S-HHHHHHHHHHHHT--TCSEEE
T ss_pred HHHHHHHHH-HCCCEEEEEEEeCC---------H-HHHHHHHHHHHhC--CCCEEE
Confidence 345778885 68998766777777 7 8899999887652 346554
No 33
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MS SGPP, hydrolase, 5-bromouracil; 1.50A {Leishmania naiffi}
Probab=38.70 E-value=49 Score=29.17 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=59.6
Q ss_pred hhcCccccccCCCCCCCCCCCCCCCeEEEEEEec-CCC--CCCCCCCh-------HHHHHHHHHHHHHhc-CCCc-----
Q 020918 20 DEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVS-YNK--GKFRLKGT-------INDVRNMRDLLINSF-KFQE----- 83 (320)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ALlIGi~-y~~--~~~~L~~~-------~~Da~~m~~~L~~~~-Gf~~----- 83 (320)
..|+|....+=.....+|. .+.++||+|-+ |.. +...|... -.-..+|.+.|.+.+ ||..
T Consensus 72 ~~i~P~~~~iF~Af~~tp~----~~VKVVIlGQDPYh~pgqA~GLaFSV~~gv~~PpSL~NIyKEL~~Dlpg~~~p~~G~ 147 (268)
T 3cxm_A 72 RVILPPAADIFNAFNSCPF----RGLKVVLLGQDPYHDLHQAHGLCFSVLPEVPLPPSLRNIYKELTTDIAGFQAPKHGY 147 (268)
T ss_dssp CCEESCGGGTTHHHHTSCS----TTCCEEEEESSCCCSTTTCCSSTTCCCTTSCCCHHHHHHHHHHHHHSTTCCCCSSCC
T ss_pred CeecCCchhhhHhhhcCCH----hHeEEEEEeCCCCcCCCCeeeECcccCCCCchhHHHHHHHHHHHhhccCCCCCCCCC
Confidence 5799988877666554443 47889999999 975 23223221 244667888887777 7642
Q ss_pred -----ccEEEecCCc-------cCCCCc-ccHHHHHHHHHHHHHhCCCCCEEEEEEeeCc
Q 020918 84 -----EGIIVLTEEE-------KDEMYS-PTKKNIQKALEWLVNDCRKGDSLVFYFSGHG 130 (320)
Q Consensus 84 -----~~I~~L~d~~-------a~~~~~-pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG 130 (320)
++-++|.|.- +..... --.+.+.+++-+.+.+.+...+||+-+-.|.
T Consensus 148 L~~WA~QGVLLLNtvLTV~~g~a~SH~~~~GWe~fTd~vI~~l~~~~~~~vVFiLWG~~A 207 (268)
T 3cxm_A 148 LQSWSEQGMLMLNATLTVEAHKANSHSKTSGWAAFTDAVIQHLSQHHPNRLVFLLWGGYA 207 (268)
T ss_dssp CHHHHTTTEEEEESSCCEETTCTTTTTTTSCHHHHHHHHHHHHHHHCSSCCEEEEESHHH
T ss_pred cHHHHhcCeEeEeceEEEeCCCCCccCCCcChHHHHHHHHHHHHhhCCCCeEEEEeCHHH
Confidence 2333444543 111111 2355555554333333224457777775554
No 34
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=37.64 E-value=68 Score=28.77 Aligned_cols=56 Identities=7% Similarity=0.056 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHHHHhcCC--CcccEEEe-cCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEE
Q 020918 62 KGTINDVRNMRDLLINSFKF--QEEGIIVL-TEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFY 125 (320)
Q Consensus 62 ~~~~~Da~~m~~~L~~~~Gf--~~~~I~~L-~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~Y 125 (320)
.|...=-+.+++++....|. ++++|.++ +.. ....+..++.-+..-.+++|.+++-
T Consensus 71 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G--------~~~al~~~~~~l~~~~~~gd~Vlv~ 129 (401)
T 7aat_A 71 AGLADFTRASAELALGENSEAFKSGRYVTVQGIS--------GTGSLRVGANFLQRFFKFSRDVYLP 129 (401)
T ss_dssp TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH--------HHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCHHHHHHHHHHhcCCCccccccCceEEEecCc--------chHHHHHHHHHHHHhccCCCEEEEc
Confidence 34434445667777544553 36677653 443 3445555555554445789999884
No 35
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=37.43 E-value=1e+02 Score=21.87 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCC-CCEEEEEEee
Q 020918 68 VRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRK-GDSLVFYFSG 128 (320)
Q Consensus 68 a~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~-~D~l~~YfSG 128 (320)
...+++.|+ .+|....+-+..-+ .|...+.+-..++.+-..+ .|.+.||..+
T Consensus 14 ~~kv~k~l~-~yg~rvQ~SVFeg~--------lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~ 66 (85)
T 2i0x_A 14 VNKVKKFLR-MHLNWVQNSVFEGE--------VTLAEFERIKEGLKKIIDENSDSVIIYKLR 66 (85)
T ss_dssp HHHHHHHHT-TTSEEEETTEEEEE--------CCHHHHHHHHHHHHHSSCTTTCEEEEEEES
T ss_pred HHHHHHHHH-HhCcccceeEEEEE--------CCHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 456788885 56755433222222 2565655544555555555 6999999999
No 36
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, center for structural genomics, JCSG; 2.53A {Thermotoga maritima} SCOP: c.118.1.1
Probab=34.96 E-value=71 Score=30.17 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=48.7
Q ss_pred CeEEEEEEecCCCCCCCCCChHHHHHH-HHHHHHH--------hcCC--C-cccEEEecCCccCCCCcccHHHHHHH--H
Q 020918 44 SRRAVLCGVSYNKGKFRLKGTINDVRN-MRDLLIN--------SFKF--Q-EEGIIVLTEEEKDEMYSPTKKNIQKA--L 109 (320)
Q Consensus 44 ~~~ALlIGi~y~~~~~~L~~~~~Da~~-m~~~L~~--------~~Gf--~-~~~I~~L~d~~a~~~~~pT~~~I~~a--l 109 (320)
..+.+|||+. +++..=|.+ +.+.+.+ ++|+ + ..+|.++... ...|+...+..+ +
T Consensus 49 ~gr~~vvg~G--------KAa~~MA~aa~e~~~~~~~~GlVvt~~g~~~~~~~~i~v~eA~----HPvPD~~s~~Aa~~i 116 (429)
T 2b8n_A 49 LDRVILVAVG--------KAAWRMAKAAYEVLGKKIRKGVVVTKYGHSEGPIDDFEIYEAG----HPVPDENTIKTTRRV 116 (429)
T ss_dssp CCSEEEEEES--------TTHHHHHHHHHHHHGGGEEEEEEEEETTCCCSCCTTCEEEEEC----SSSCCHHHHHHHHHH
T ss_pred CCCEEEEEec--------HHHHHHHHHHHHHhhccCccEEEEECCCcCCCCCCceEEEECC----CCCCCHHHHHHHHHH
Confidence 3578899998 444444444 4444411 1222 1 2345555432 346888877755 5
Q ss_pred HHHHHhCCCCCEEEEEEeeCcccc
Q 020918 110 EWLVNDCRKGDSLVFYFSGHGLRQ 133 (320)
Q Consensus 110 ~~l~~~~~~~D~l~~YfSGHG~~~ 133 (320)
-++++.++++|.|++..||=|.-.
T Consensus 117 l~l~~~l~~~Dlvl~LISGGGSAL 140 (429)
T 2b8n_A 117 LELVDQLNENDTVLFLLSGGGSSL 140 (429)
T ss_dssp HHHHSSCCTTCEEEEEECTTHHHH
T ss_pred HHHHhcCCCCCEEEEEecCcHHHH
Confidence 578888999999999999977543
No 37
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A*
Probab=33.62 E-value=34 Score=29.65 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=29.5
Q ss_pred hhHHhhh--hhcCccccccCCCCCCCCCCCCCCCeEEEEEEec-CCC
Q 020918 13 IMKKIRN--DEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVS-YNK 56 (320)
Q Consensus 13 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ALlIGi~-y~~ 56 (320)
.+++++. ..|+|....+=.... +|.. +.++||+|-+ |..
T Consensus 42 fl~~e~~~~~~i~P~~~~iF~af~-tp~~----~VKVVIlGQDPYh~ 83 (238)
T 3a7n_A 42 FLRAEIAAGRRYLPAGSNVLRAFT-FPFD----NVRVLIVGQDPYPT 83 (238)
T ss_dssp HHHHHHHTTCCCBSCGGGTTGGGS-SCGG----GCCEEEEESSCCSS
T ss_pred HHHHHHHcCCeeCCCHHHHHHHhc-CCHH----HeEEEEEeCCCCCC
Confidence 3455553 579999888877776 6554 7889999999 976
No 38
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex, hydrolase/inhibitor complex, EB repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1
Probab=33.18 E-value=34 Score=29.53 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=27.9
Q ss_pred hHHhhh-hhcCccccccCCCCCCCCCCCCCCCeEEEEEEec-CCC
Q 020918 14 MKKIRN-DEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVS-YNK 56 (320)
Q Consensus 14 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ALlIGi~-y~~ 56 (320)
++++|. ..|+|....+=.....+|. .+.++||+|-+ |..
T Consensus 31 l~~e~~~~~i~P~~~~if~af~~tp~----~~VKVVIlGQDPYh~ 71 (231)
T 2j8x_A 31 VRRLRTQATVYPEEDMCMAWARFCDP----SDIKVVILGQDPYHG 71 (231)
T ss_dssp HHHHHTTSCEESCTTTTTGGGSSSCG----GGCCEEEEECSCCSS
T ss_pred HHHHHhcCccCCCchhhhHhhhCCCH----HHeEEEEEecCCCCC
Confidence 344443 5699998887766655554 47889999999 876
No 39
>1cvr_A Gingipain R, RGPB; caspases, cysteine proteinase, hydrolase-hydrolase inhibitor; HET: H37; 2.00A {Porphyromonas gingivalis} SCOP: b.1.18.12 c.17.1.2
Probab=31.37 E-value=1.2e+02 Score=28.61 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=39.0
Q ss_pred CeEEEEEEec-CCCCCCCCCChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEE
Q 020918 44 SRRAVLCGVS-YNKGKFRLKGTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSL 122 (320)
Q Consensus 44 ~~~ALlIGi~-y~~~~~~L~~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l 122 (320)
++++++|+=+ ......+-.-...+.+.+++.+. ..++- +|..+.++. .+..+|.+++. + -.+
T Consensus 142 r~~~l~ia~~~~~~~~d~G~~~~~~~~~~~~~~~-~~~~~--~v~k~ydp~------~~~~~I~~~ln---~-----G~~ 204 (435)
T 1cvr_A 142 LGQALCIASAEGGPSADNGESDIQHENVIANLLT-QYGYT--KIIKCYDPG------VTPKNIIDAFN---G-----GIS 204 (435)
T ss_dssp TTEEEEEECSCBCTTSGGGCBHHHHHHHHHHHHH-HHTCS--EEEEEESSS------CCHHHHHHHHH---H-----CCS
T ss_pred hceEEEEecCCCCcccccchhhhhHHHHHHhhhh-cCCcc--eeEEecCCc------cCHHHHHHHHh---C-----CCe
Confidence 6788888854 21111110122345566666664 44543 344444543 25566655443 2 357
Q ss_pred EEEEeeCcccc
Q 020918 123 VFYFSGHGLRQ 133 (320)
Q Consensus 123 ~~YfSGHG~~~ 133 (320)
++.|.|||...
T Consensus 205 ivnY~GHG~~~ 215 (435)
T 1cvr_A 205 LVNYTGHGSET 215 (435)
T ss_dssp EEEEESCBCSS
T ss_pred EEEEecCCCcc
Confidence 88888999765
No 40
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=29.63 E-value=89 Score=22.41 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCC-CCEEEEEEeeC
Q 020918 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRK-GDSLVFYFSGH 129 (320)
Q Consensus 66 ~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~-~D~l~~YfSGH 129 (320)
.....+++.|+ .+|....+-+...+ -|.....+...++.+-..+ .|.++||..+-
T Consensus 16 kr~~kv~k~l~-~yg~rvQ~SVFe~~--------lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~~ 71 (90)
T 1zpw_X 16 TRRVKLANLLK-SYGERVQLSVFECY--------LDERLLEDLRRRARRLLDLGQDALRIYPVAG 71 (90)
T ss_dssp HHHHHHHHHHH-TTEEEEETTEEEEE--------ECHHHHHHHHHHHHHHCCTTTCEEEEEECCS
T ss_pred HHHHHHHHHHH-HhCccceEeEEEEE--------cCHHHHHHHHHHHHHhhCCCCCEEEEEEeCC
Confidence 56788889996 67754433222222 1444433333334333555 79999999887
No 41
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=28.60 E-value=1.2e+02 Score=24.69 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEeeCccccC
Q 020918 66 NDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLRQP 134 (320)
Q Consensus 66 ~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~~~ 134 (320)
.....++++|. ..|+....+.++.| +.+.|.++|.+.+++ .|+++ .--|=|...+
T Consensus 23 tN~~~l~~~L~-~~G~~v~~~~iv~D---------d~~~I~~~l~~a~~~---~DlVi-ttGG~g~~~~ 77 (172)
T 3kbq_A 23 TNAAFIGNFLT-YHGYQVRRGFVVMD---------DLDEIGWAFRVALEV---SDLVV-SSGGLGPTFD 77 (172)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEEEECS---------CHHHHHHHHHHHHHH---CSEEE-EESCCSSSTT
T ss_pred HHHHHHHHHHH-HCCCEEEEEEEeCC---------CHHHHHHHHHHHHhc---CCEEE-EcCCCcCCcc
Confidence 34556888886 68998777777777 688999999988776 36544 4455554443
No 42
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=27.70 E-value=1.2e+02 Score=26.39 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHH
Q 020918 65 INDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLV 113 (320)
Q Consensus 65 ~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~ 113 (320)
...|+.|+++|.+.+|++.+.|.+-..... |.+|+......+.
T Consensus 96 ~sEA~~m~~~l~~~~GVp~~~IllE~~S~n------T~ENa~~s~~ll~ 138 (266)
T 3ca8_A 96 RAEATILADIAHQFWHIPHEKIWIEDQSTN------CGENARFSIALLN 138 (266)
T ss_dssp SCHHHHHHHHHHHTTCCCGGGEEEECCCCS------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHEEeCCCCcc------HHHHHHHHHHHHH
Confidence 457889999998545999888865443332 8888887766553
No 43
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=26.81 E-value=37 Score=26.95 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=14.9
Q ss_pred HHHhCCCCCEEEEEEeeC
Q 020918 112 LVNDCRKGDSLVFYFSGH 129 (320)
Q Consensus 112 l~~~~~~~D~l~~YfSGH 129 (320)
++++.++||.+|||-|+=
T Consensus 31 ~lr~mk~GD~~~fYhs~~ 48 (145)
T 2hd9_A 31 TLSRVKPGDKLVIYVRQE 48 (145)
T ss_dssp HHTTCCTTCEEEEEECCE
T ss_pred HHHhCCCCCEEEEEEccc
Confidence 446789999999999963
No 44
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=25.31 E-value=1.1e+02 Score=28.62 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=41.0
Q ss_pred CeEEEEEEec-CCCCCCCCCChHHHHH--HHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCC
Q 020918 44 SRRAVLCGVS-YNKGKFRLKGTINDVR--NMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGD 120 (320)
Q Consensus 44 ~~~ALlIGi~-y~~~~~~L~~~~~Da~--~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D 120 (320)
+.-.|.+|.+ ........+|-..|.+ .++.+|+ .+|+......++.| +.+.|.++|.+.+++ .|
T Consensus 183 rv~IistGdEl~~~g~~~~~G~i~dsN~~~L~~~l~-~~G~~v~~~~iv~D---------d~~~i~~~l~~a~~~---~D 249 (419)
T 2fts_A 183 VVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQ-EHGYPTINLGIVGD---------NPDDLLNALNEGISR---AD 249 (419)
T ss_dssp CEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHH-TTTCCEEEEEEECS---------SHHHHHHHHHHHHHH---CS
T ss_pred EEEEEEechhccCCCCCCCCCcEecCchHHHHHHHH-HCCCEEEEEeecCC---------CHHHHHHHHHHHHhc---CC
Confidence 3334444555 4332222345544444 5777785 78998766777777 678899999887765 36
Q ss_pred EE
Q 020918 121 SL 122 (320)
Q Consensus 121 ~l 122 (320)
++
T Consensus 250 lV 251 (419)
T 2fts_A 250 VI 251 (419)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 45
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=24.14 E-value=56 Score=26.06 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=15.4
Q ss_pred HHHHHhCCCCCEEEEEEee
Q 020918 110 EWLVNDCRKGDSLVFYFSG 128 (320)
Q Consensus 110 ~~l~~~~~~~D~l~~YfSG 128 (320)
+.+.+..+.||.+|||=|+
T Consensus 37 rn~mr~Mk~GD~~ffYHS~ 55 (145)
T 2gbs_A 37 KLHMVAMRRGDRAFYYHSN 55 (145)
T ss_dssp HHHHHHCCTTCEEEEEETT
T ss_pred HHHHHhcCCCCEEEEEEeC
Confidence 4455578999999999886
No 46
>4g6u_B EC869 CDII; beta-augmentation, DNAse, toxin, immunity; 2.35A {Escherichia coli O157}
Probab=23.12 E-value=76 Score=26.14 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=33.8
Q ss_pred CCCEEEEEEeeCccccCCCCCCCCCCceeeEEeccCCCCCcccHHHHHHHHhccccCCc
Q 020918 118 KGDSLVFYFSGHGLRQPDFNNDETDGFDETICPVDFLKEGMIIDNDINSIIVKPLKEGV 176 (320)
Q Consensus 118 ~~D~l~~YfSGHG~~~~~~~g~~~~g~~~~lvp~D~~~~~~i~~~~L~~~l~~~~~~~~ 176 (320)
.+=..+..|||.|....+.. +...++|.| +.+.+|.+.+.+++.+.+
T Consensus 17 ~~f~~I~T~sg~~l~~~Dp~------~~~~~L~~d------vdd~~LG~~i~~AL~~SR 63 (177)
T 4g6u_B 17 PDFLSVETYSGLGMTGRDPL------FSPRLLQPD------VDDKSLGEEILQALSDSR 63 (177)
T ss_dssp SSCEEEEEEEESSSEEECTT------SCCEEECTT------CCHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEEecCceEecCCC------CCCeeCCCC------CCHHHHHHHHHHHHHhCC
Confidence 45578889999998876642 234788988 677788887777665544
No 47
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii}
Probab=22.71 E-value=42 Score=28.98 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=28.0
Q ss_pred hhHHhhh--hhcCccccccCCCCCCCCCCCCCCCeEEEEEEec-CCC
Q 020918 13 IMKKIRN--DEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVS-YNK 56 (320)
Q Consensus 13 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ALlIGi~-y~~ 56 (320)
.++++|. ..|+|....+=.....+|. .+.++||+|-+ |..
T Consensus 32 fl~~e~~~g~~i~P~~~~iF~af~~tp~----~~VKVVIlGQDPYh~ 74 (232)
T 3tr7_A 32 FVKKERKAGKIIYPPQKDIFNALKLTPY----EAIKVVILGQDPYHG 74 (232)
T ss_dssp HHHHHHHTTCCEESCGGGTTHHHHHSCG----GGCCEEEEESSCCCS
T ss_pred HHHHHHHcCCEEeCCHHHHHHHHhcCCc----cceEEEEEecCCCCC
Confidence 3455554 3689998877665544443 47889999999 876
No 48
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=22.64 E-value=68 Score=26.31 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=15.8
Q ss_pred HHHHHhCCCCCEEEEEEeeC
Q 020918 110 EWLVNDCRKGDSLVFYFSGH 129 (320)
Q Consensus 110 ~~l~~~~~~~D~l~~YfSGH 129 (320)
+.+++..+.||.+|||=|+.
T Consensus 53 RN~mr~Mk~GD~vfFYHS~c 72 (172)
T 2ar1_A 53 RNNMRAMSVGDKVLFYHSNT 72 (172)
T ss_dssp HHHHHHCCTTCEEEEEECSS
T ss_pred HHHHHhcCCCCEEEEEecCC
Confidence 44555789999999998873
No 49
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=22.49 E-value=70 Score=25.82 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=15.2
Q ss_pred HHHHHhCCCCCEEEEEEee
Q 020918 110 EWLVNDCRKGDSLVFYFSG 128 (320)
Q Consensus 110 ~~l~~~~~~~D~l~~YfSG 128 (320)
+.+++..+.||.+|||=|+
T Consensus 35 rN~mr~Mk~GD~~ffYHS~ 53 (157)
T 2eve_A 35 RNFLRTMAEGDEFFFYHSS 53 (157)
T ss_dssp HHHHHHCCTTCEEEEEECS
T ss_pred HHHHHhcCCCCEEEEEecC
Confidence 4455578999999999777
No 50
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=22.32 E-value=61 Score=26.12 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.6
Q ss_pred HHHHHhCCCCCEEEEEEee
Q 020918 110 EWLVNDCRKGDSLVFYFSG 128 (320)
Q Consensus 110 ~~l~~~~~~~D~l~~YfSG 128 (320)
+.+.+..+.||.+|||=|+
T Consensus 38 rN~mr~Mk~GD~~fFYHS~ 56 (155)
T 1zce_A 38 RNNMRAMKIGDKGFFYHSN 56 (155)
T ss_dssp HHHHHTCCTTCEEEEEETT
T ss_pred HHHHHhccCCCEEEEEEeC
Confidence 4555678999999999886
No 51
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=21.72 E-value=98 Score=28.80 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=39.2
Q ss_pred EEEEec-CCCCCCCCCChHHHHH--HHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEE
Q 020918 48 VLCGVS-YNKGKFRLKGTINDVR--NMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLV 123 (320)
Q Consensus 48 LlIGi~-y~~~~~~L~~~~~Da~--~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~ 123 (320)
|.+|.+ ........+|-..|.+ .++.+|+ .+|+......++.| +.+.|.++|.+.+++ -|+++
T Consensus 186 istGdEl~~~g~~~~~G~i~DsN~~~L~~~l~-~~G~~v~~~~iv~D---------d~~~i~~~l~~a~~~---~DlVi 251 (402)
T 1uz5_A 186 ISTGNEIVPPGNELKPGQIYDINGRALCDAIN-ELGGEGIFMGVARD---------DKESLKALIEKAVNV---GDVVV 251 (402)
T ss_dssp EEECTTEECTTSCCCTTCEECCHHHHHHHHHH-HHTSEEEEEEEECS---------SHHHHHHHHHHHHHH---CSEEE
T ss_pred EEcCccccCCCCCCCCCcEEcchHHHHHHHHH-hCCCeEEEEEEeCC---------CHHHHHHHHHHHhhC---CCEEE
Confidence 334544 4332222355544443 5777785 68998766677777 688999999888765 36553
No 52
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=21.49 E-value=1.6e+02 Score=21.63 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCC-CCCEEEEEEeeCcc
Q 020918 67 DVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCR-KGDSLVFYFSGHGL 131 (320)
Q Consensus 67 Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~-~~D~l~~YfSGHG~ 131 (320)
-...++++|+ .+|....+-+..-. .|..++.+-..++.+-.. ..|.|.||.-|-..
T Consensus 23 R~~kv~k~~~-~yg~rvQ~SVFe~~--------lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~~~~ 79 (100)
T 4es1_A 23 RLRKVAKACQ-NYGQRVQNSVFECI--------VDSTQLTSLKLELTSLIDEEKDSLRIYRLGNNY 79 (100)
T ss_dssp HHHHHHHHHH-TTEEEEETTEEEEE--------ECHHHHHHHHHHHHHHSCTTTCEEEEEEECCCS
T ss_pred HHHHHHHHHH-HhChhheeeEEEEE--------cCHHHHHHHHHHHHhhcCCCCCEEEEEEcCCCc
Confidence 4566778885 67754433222222 255555544444444444 45999999988543
No 53
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=21.24 E-value=60 Score=25.73 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=13.0
Q ss_pred HHHhCCCCCEEEEEEee
Q 020918 112 LVNDCRKGDSLVFYFSG 128 (320)
Q Consensus 112 l~~~~~~~D~l~~YfSG 128 (320)
++++.++||.+||| .+
T Consensus 34 ~lr~Mk~GD~~~fY-~~ 49 (147)
T 2p5d_A 34 TINKVKVGDKLIIY-EI 49 (147)
T ss_dssp HHTTCCTTCEEEEE-EC
T ss_pred HHHhCCCCCEEEEE-Ee
Confidence 44578999999999 55
No 54
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=21.05 E-value=4e+02 Score=22.87 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHHhcCCCcccEEEecCCccCCCCcccHHHHHHHHHHHHHhCCCCCEEEEEEeeCccc
Q 020918 63 GTINDVRNMRDLLINSFKFQEEGIIVLTEEEKDEMYSPTKKNIQKALEWLVNDCRKGDSLVFYFSGHGLR 132 (320)
Q Consensus 63 ~~~~Da~~m~~~L~~~~Gf~~~~I~~L~d~~a~~~~~pT~~~I~~al~~l~~~~~~~D~l~~YfSGHG~~ 132 (320)
++......+++.+.+.+|.++++|.+... +...+..++..+ .+++|.+++--.+|...
T Consensus 48 y~~~~~~~l~~~la~~~~~~~~~i~~~~g---------~~~a~~~~~~~l---~~~gd~vl~~~~~~~~~ 105 (354)
T 3ly1_A 48 YAKNEILMLGNKLAAHHQVEAPSILLTAG---------SSEGIRAAIEAY---ASLEAQLVIPELTYGDG 105 (354)
T ss_dssp CCHHHHHHHHHHHHHHTTSCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEESSSCTHH
T ss_pred CCCCchHHHHHHHHHHhCCChHHEEEeCC---------hHHHHHHHHHHH---hCCCCeEEECCCCchHH
Confidence 34455678888888778887777765433 455566666555 46889988876666543
No 55
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A
Probab=20.56 E-value=3.9e+02 Score=22.65 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=41.6
Q ss_pred hHHhhh-hhcCccccccCCCCCCCCCCCCCCCeEEEEEEec-CCC--CCCCCCC-------hHHHHHHHHHHHHHhc-CC
Q 020918 14 MKKIRN-DEISPNKRSLNTKPFSLSSSSSRPSRRAVLCGVS-YNK--GKFRLKG-------TINDVRNMRDLLINSF-KF 81 (320)
Q Consensus 14 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ALlIGi~-y~~--~~~~L~~-------~~~Da~~m~~~L~~~~-Gf 81 (320)
++++|. ..|+|..+.+=.....+|. .+.++||+|-+ |.. +...|.. .-.-...|.+.|.+.+ ||
T Consensus 28 l~~e~~~~~i~P~~~~iF~a~~~tp~----~~vKVVIlGQDPYh~~gqA~GLaFSV~~~v~~PpSL~NI~kEL~~dl~g~ 103 (223)
T 3fci_A 28 VAEERKHYTVYPPPHQVFTWTQMCDI----KDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDF 103 (223)
T ss_dssp HHHHHHHSCEESCGGGTTGGGTSSCG----GGCCEEEEECSCCCSTTTCCSSTTCCCTTSCCCHHHHHHHHHHHHHSTTC
T ss_pred HHHHHhCCcccCCHHHHHHHHhccCc----cceEEEEEecCCCcCCCCceeEeEecCCCCCCCHHHHHHHHHHHHhccCC
Confidence 344443 5689998887666655544 47889999999 975 2222221 1245667888887666 65
Q ss_pred C
Q 020918 82 Q 82 (320)
Q Consensus 82 ~ 82 (320)
.
T Consensus 104 ~ 104 (223)
T 3fci_A 104 V 104 (223)
T ss_dssp C
T ss_pred C
Confidence 4
Done!