BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020921
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82715|PPD5_ARATH PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis
thaliana GN=PPD5 PE=1 SV=3
Length = 297
Score = 360 bits (923), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 187/330 (56%), Positives = 227/330 (68%), Gaps = 43/330 (13%)
Query: 1 MVLLSPSLSLPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQ-QNGFCRRDLVL 59
M LL PSL P R R S + + + I S S++ I + G RRDLVL
Sbjct: 1 MALLCPSLPSPNSRLFRC-RSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVL 59
Query: 60 FGLSSSLSLGFPTPGSV---------AGEDVKMASFVDEINAYTYLYPMELPSKKFLFKW 110
GLSS LS+ P V +GE++KM + VD+INAY+Y YP++ PS+K +FKW
Sbjct: 60 IGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKW 119
Query: 111 VESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKD 170
VESRKPERYSSAAPLSP+ARLRIVSERVD+ DNL+IS++IGPPN + L SK+K TW+AK+
Sbjct: 120 VESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKE 178
Query: 171 VADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYR 230
VADSVLSDKSALRVTSSQR+ ESSVLDAH S +DGEPYW+YEYL+RKSPT + + LYR
Sbjct: 179 VADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYR 238
Query: 231 HYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMG 290
HY++STAER+GYLY+I+ASTLGKQWD +MG
Sbjct: 239 HYISSTAERDGYLYTINASTLGKQWD-------------------------------KMG 267
Query: 291 PFLEKSVASFHLLPPTDDYVPPYKDPWRFW 320
P LE++V SF LLPPTD YVPPYKDPWRFW
Sbjct: 268 PVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 47/222 (21%)
Query: 49 QNGFCRRDLVLFGLSSS-LSLGFPTPGSVAGEDVK-MASFVDEINAYTYLYPMELPSKKF 106
Q+ RR +V FG+ + +SL P S A E K + D +AY +LYP
Sbjct: 45 QDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYP-------- 96
Query: 107 LFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTW 166
F W E + + ++ + ++ +++ +SV + P + Q +K
Sbjct: 97 -FGWQE------------VVIEGQDKVYKDVIEPLES--VSVNLVPTSKQTIKEFGPPKQ 141
Query: 167 NAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEP 226
A+ + VL+ + +++++DA VDG+ Y+ +E+ + Q
Sbjct: 142 IAETLIKKVLAPPNQ----------KTTLIDASEHDVDGKTYYQFEFTV--------QAR 183
Query: 227 NLYRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHT 268
N RH + + G Y+++ ++W++ + R HT
Sbjct: 184 NYTRHALGTITVFNGNFYTLTTGANERRWEK----MKDRLHT 221
>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana
tabacum GN=PSBP2 PE=1 SV=2
Length = 265
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 29/142 (20%)
Query: 127 PNARLRIVSERVDIIDNLIISVT---------IGPPNVQFLKSKD----KSTWNAKDVAD 173
P LR + D N+I+++T G P QFL D + ++ K ++
Sbjct: 122 PGQVLRF-EDNFDATSNVIVAITPTDKKSITDFGSPE-QFLSQVDYLLGRQAYSGKTDSE 179
Query: 174 SVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYV 233
S +A ++VL+ +++V G+PY++ L R + N G +H +
Sbjct: 180 GGFE---------SDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGG-----KHQL 225
Query: 234 ASTAEREGYLYSISASTLGKQW 255
+ +G LY A K+W
Sbjct: 226 ITATVNDGKLYICKAQAGDKRW 247
>sp|P84853|RIPL1_PHYDI Ribosome-inactivating protein PD-L1/PD-L2 OS=Phytolacca dioica PE=1
SV=2
Length = 261
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 8/142 (5%)
Query: 31 RLNNKAIVCSCASS---KPIQQNGF--CRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMAS 85
R N + +CS +SS KPI N S + LG S G+ +S
Sbjct: 97 RTNVENTLCSSSSSRDAKPINYNSLYSTLEKKAEVNSRSQVQLGIQILSSDIGKISGQSS 156
Query: 86 FVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLI 145
F D+ A L +++ S+ FK++E++ ++ SPN ++ + E I I
Sbjct: 157 FTDKTEAKFLLVAIQMVSEAARFKYIENQVKTNFNR--DFSPNDKILDLEENWGKISTAI 214
Query: 146 ISVTIGP-PNVQFLKSKDKSTW 166
T G P LK+ D + W
Sbjct: 215 HDATNGALPKPLELKNADGTKW 236
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis
sativus GN=PSBP PE=2 SV=1
Length = 263
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 36/233 (15%)
Query: 37 IVCSCASSKPIQQ--NGFCRRDLVLFGLSSSLSLGFP-TPGSVA-GEDV----KMASFVD 88
+VC +P Q+ G R L L L + +LG +P A GE K S D
Sbjct: 35 LVCRAQKQQPAQEEEGGVVSRRLALTVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTD 94
Query: 89 EINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISV 148
+ + + +PSK W S++ E P LR + D NL SV
Sbjct: 95 YLPYSGDGFKLSIPSK-----WNPSKEREF--------PGQVLRY-EDNFDSNSNL--SV 138
Query: 149 TIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQ------RMAESSVLDAHTSK 202
I P + + +K V D +L ++ T+S+ +A +++L+A S
Sbjct: 139 IINPTDKKSIKDFGSPEEFLSKV-DYLLGKQAYFGKTASEGGFDPDAVATANILEATASN 197
Query: 203 VDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQW 255
V+G+ Y+F L R + + G +H + + +G LY A K+W
Sbjct: 198 VNGKDYYFVSVLTRTADGDEGG-----KHQLITATVNDGKLYICKAQAGDKRW 245
>sp|P85189|PSBP_HELAN Oxygen-evolving enhancer protein 2, chloroplastic OS=Helianthus
annuus GN=PSBP PE=1 SV=1
Length = 263
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 190 MAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAS 249
+A +++L+ T VDG+ Y+F L R + + G +H + S +G LY A
Sbjct: 185 VATANILEVATPTVDGKQYYFLSVLTRTADGDEGG-----KHQLISATVSDGKLYICKAQ 239
Query: 250 TLGKQW 255
K+W
Sbjct: 240 AGDKRW 245
>sp|P56205|CYC_ASPNG Cytochrome c OS=Aspergillus niger GN=cycA PE=1 SV=1
Length = 111
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 226 PNLYRHYVASTAEREGYLYSISASTLGKQWDEVSLF 261
PNL+ + T + EGY Y+ + G WDE +LF
Sbjct: 38 PNLHGLFGRKTGQSEGYAYTDANKQAGVTWDENTLF 73
>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia
oleracea GN=PSBP PE=1 SV=1
Length = 267
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 190 MAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISAS 249
+A ++VL++ T VDG+ Y+ L R + + G +H V + ++G LY A
Sbjct: 189 VASANVLESSTPVVDGKQYYSITVLTRTADGDEGG-----KHQVIAATVKDGKLYICKAQ 243
Query: 250 TLGKQW 255
K+W
Sbjct: 244 AGDKRW 249
>sp|Q00564|LCNC_LACLL Lactococcin-A transport/processing ATP-binding protein LcnC
OS=Lactococcus lactis subsp. lactis GN=lcnC PE=3 SV=1
Length = 715
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 39/178 (21%)
Query: 162 DKSTWNAKDVADSVLSDKSALRVTSSQRMAESSV----LDAHTSKVDGEPYWFYEYLIRK 217
+KS + + +A + + SAL + + + E SV DA ++ PY F ++I+
Sbjct: 32 EKSLASLRLLAGTTIEGTSALGIKKAAEILEFSVQALRTDASLFEMKNAPYPFIAHVIKD 91
Query: 218 SPTNLGQEPNLYRHYVASTAEREGYLY------SISASTLGKQ-----WDEVSLFLSTRA 266
Y HY T + ++ +I + L K+ W +SLFLST
Sbjct: 92 QK---------YPHYYVITGANKNSVFIADPDPTIKMTKLSKEAFLSEWTGISLFLSTTP 142
Query: 267 HTHKCNNK----------YLRQTKDHVYVMMQMGPF---LEKSVASFHLLPPTDDYVP 311
H K RQ K V + + + F L + S++L D Y+P
Sbjct: 143 SYHPTKEKASSLLSFIPIITRQKK--VILNIVIASFIVTLINILGSYYLQSMIDSYIP 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,712,366
Number of Sequences: 539616
Number of extensions: 4574590
Number of successful extensions: 10559
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10553
Number of HSP's gapped (non-prelim): 14
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)