Query 020921
Match_columns 320
No_of_seqs 159 out of 182
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:12:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00059 PsbP domain-containin 100.0 3.4E-51 7.4E-56 382.6 17.7 232 12-303 38-285 (286)
2 PLN00042 photosystem II oxygen 100.0 5.1E-49 1.1E-53 367.3 18.6 210 34-302 35-259 (260)
3 PLN00067 PsbP domain-containin 100.0 5.7E-36 1.2E-40 279.7 16.6 141 89-302 103-263 (263)
4 PF01789 PsbP: PsbP; InterPro 100.0 1.7E-36 3.8E-41 265.6 10.1 155 78-303 18-175 (175)
5 PLN00066 PsbP domain-containin 100.0 1.2E-31 2.5E-36 251.7 15.4 186 39-304 31-260 (262)
6 PLN03152 hypothetical protein; 99.9 2.2E-26 4.7E-31 211.6 14.2 175 53-303 32-241 (241)
7 PF08786 DUF1795: Domain of un 96.1 0.11 2.3E-06 43.4 11.0 70 192-300 60-130 (130)
8 PRK11615 hypothetical protein; 78.9 56 0.0012 30.4 14.0 85 145-256 83-169 (185)
9 smart00564 PQQ beta-propeller 69.3 6.2 0.00013 24.8 2.9 23 234-256 9-31 (33)
10 COG5435 Uncharacterized conser 66.4 61 0.0013 29.2 9.4 77 194-307 69-146 (147)
11 PF10738 Lpp-LpqN: Probable li 65.3 75 0.0016 28.9 10.0 73 194-303 100-174 (175)
12 PF01011 PQQ: PQQ enzyme repea 61.0 6.4 0.00014 26.4 1.8 22 235-256 4-25 (38)
13 PF12712 DUF3805: Domain of un 47.7 2.2E+02 0.0047 25.8 9.7 95 83-215 1-98 (153)
14 PF06268 Fascin: Fascin domain 34.1 84 0.0018 25.5 4.7 51 230-283 45-96 (111)
15 PF09211 DUF1958: Domain of un 33.6 32 0.00069 27.0 2.0 17 194-210 3-19 (65)
16 cd00216 PQQ_DH Dehydrogenases 21.1 1.3E+02 0.0028 30.7 4.3 53 204-256 265-326 (488)
17 smart00043 CY Cystatin-like do 21.0 90 0.002 24.8 2.6 81 168-256 16-96 (107)
No 1
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=100.00 E-value=3.4e-51 Score=382.65 Aligned_cols=232 Identities=19% Similarity=0.262 Sum_probs=200.1
Q ss_pred CcccccccCCCcccccccccCCCCceeeeecCCCCCccCCchhhHHHHHHH--HhhhhccCCCCCCccccccCccceecC
Q 020921 12 RLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGFCRRDLVLFGL--SSSLSLGFPTPGSVAGEDVKMASFVDE 89 (320)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rRr~~l~gl--~~~~a~~~p~~~a~ae~a~~f~~~~D~ 89 (320)
+..|.||+++|+.++.+|++.+..++.+.|.. ..+..+.+.||.+|+.++ +..++.....+.|+|+. ++|+.|+|+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~rr~~~~~~l~~~~~~~s~~~~~~a~a~~-~~l~~y~D~ 115 (286)
T PLN00059 38 HLLFSRPISSGPKHQSAKSAKPDSPVAINCLT-DAKQVCAVGRRKSMMMGLLMSGLIVSEANLPTAFASI-PVFREYIDT 115 (286)
T ss_pred hhhccccccCCcccccccccCCCCCeeeeccc-chhhhhhhhhhhhhHHHHHHHHHHHHhhcCchhhcCC-cccceeEcC
Confidence 46789999999999999999999999999983 556778888888877666 33344444455777653 469999999
Q ss_pred CCceEEeccCCCCCccccccccccccccccCCCCCCCCCcceEEe--e--cccccccceeeEEEeCCChhhhhccccccc
Q 020921 90 INAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIV--S--ERVDIIDNLIISVTIGPPNVQFLKSKDKST 165 (320)
Q Consensus 90 ~dGYsFlYP~~W~s~ev~~~G~d~rf~D~~~s~~pLs~n~rvrIV--s--e~~si~dnl~VsVslGpP~~~Fl~~~d~~~ 165 (320)
.|||+|+||.||+ +|...|+|++|||+|+.. +|++|.|. + +.++|.| ||+|+++
T Consensus 116 ~DGY~FlYP~GWi--~V~~~G~DVvFrD~Ie~~----ENVSV~ISs~sss~~~sLeD-------LGsP~eV--------- 173 (286)
T PLN00059 116 FDGYSFKYPQNWI--QVRGAGADIFFRDPVVLD----ENLSVEFSSPSSSKYTSLED-------LGSPEEV--------- 173 (286)
T ss_pred CCCeEEeCCCCCe--EeccCCCceEEeccCccc----cceEEEEecCCcccCCChHH-------cCCHHHH---------
Confidence 9999999999999 766799999999999955 56668886 3 6899999 9999999
Q ss_pred ccHHHHHhhhcccccccccccccccccccEEeeeecee-CCeeeEEEEEEEecC---------CCCCCCCCCCcceEEEE
Q 020921 166 WNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKV-DGEPYWFYEYLIRKS---------PTNLGQEPNLYRHYVAS 235 (320)
Q Consensus 166 w~g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~re~-dGk~YY~lEy~vr~s---------p~~~a~~~e~~RH~Lav 235 (320)
||+|.+++|+++++.|...|+ +++||+|.+|+. ||++||+|||.|+.. ++++.+.++|.||+||+
T Consensus 174 --gerLlkqvLa~f~str~GsgR---eaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~ 248 (286)
T PLN00059 174 --GKRVLRQYLTEFMSTRLGVKR---EANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAV 248 (286)
T ss_pred --HHHHHHHHhcccccccCCCCc---ceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEEE
Confidence 999999999998765543222 899999999977 999999999999764 56777889999999999
Q ss_pred EEEECCEEEEEEcccCcccchhhhhcccccccccccccccccccchhhHHHhhhhhHHHHhhceeeee
Q 020921 236 TAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLL 303 (320)
Q Consensus 236 ~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~ 303 (320)
++|+|||||||++|+||+||. ||++.|+++++||+|.
T Consensus 249 v~V~nGkLYTL~~qtpE~RW~-------------------------------kvk~~f~~V~dSF~V~ 285 (286)
T PLN00059 249 LGVENDRLYSIRLQTPEKVFL-------------------------------EEEKDLRRVMDSFRVE 285 (286)
T ss_pred EEEeCCEEEEEEcCCcHHHHH-------------------------------HHHHHHHHHHhheeec
Confidence 999999999999999999999 9999999999999985
No 2
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=100.00 E-value=5.1e-49 Score=367.28 Aligned_cols=210 Identities=19% Similarity=0.306 Sum_probs=170.6
Q ss_pred CCceeeeecCCCCCccCCchhhHHHHHHHH--hhhhccCCCCCCccccccCccceec-------CCCceEEeccCCC-CC
Q 020921 34 NKAIVCSCASSKPIQQNGFCRRDLVLFGLS--SSLSLGFPTPGSVAGEDVKMASFVD-------EINAYTYLYPMEL-PS 103 (320)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~rRr~~l~gl~--~~~a~~~p~~~a~ae~a~~f~~~~D-------~~dGYsFlYP~~W-~s 103 (320)
+..++|+.+.. +...+.||++|+.+++ +.++.+.|+++||||++|+|++... ++|||+|+||++| ++
T Consensus 35 ~~~~~~~~~~~---~~~~~srr~~l~~~~ga~a~~~~~~pa~aay~~~anvfg~~k~~~gF~~y~~dgY~FlyP~~W~~~ 111 (260)
T PLN00042 35 PSQVVCRAQEE---DNSAVSRRAALALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNGDGFKLLVPSKWNPS 111 (260)
T ss_pred Ccceeeecccc---ccccccHHHHHHHHHHHHHhhcccCchhhhhcchhhccCCCCCCCCCeEeeCCCeEEecCCCCccc
Confidence 34577887532 2233445555443333 3448999999999999999887433 6799999999999 56
Q ss_pred ccccccccccccccccCCCCCCCCCcceEEe-ecccccccceeeEEEeCCChhhhhcccccccccHHHHHhhhcccc---
Q 020921 104 KKFLFKWVESRKPERYSSAAPLSPNARLRIV-SERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDK--- 179 (320)
Q Consensus 104 ~ev~~~G~d~rf~D~~~s~~pLs~n~rvrIV-se~~si~dnl~VsVslGpP~~~Fl~~~d~~~w~g~~vak~vLa~~--- 179 (320)
+++.|+|+|++|+|+|+.. +|++|+|. +++++|+| ||+|++. ++++ ++.|++++++++
T Consensus 112 ke~~~~G~dv~f~D~~~~~----eNVSV~Ispt~k~sI~d-------lGsPee~-l~~v------gylL~kq~~a~~t~s 173 (260)
T PLN00042 112 KEREFPGQVLRFEDNFDAT----SNLSVMVTPTDKKSITD-------YGSPEEF-LSKV------SYLLGKQAYSGETAS 173 (260)
T ss_pred cccccCCceEEeecccccc----ccEEEEEecCCcCCHhh-------cCCHHHH-HHHH------HHHHHhhhccCcccc
Confidence 6788899999999999966 55568886 78899999 9999962 2222 678999999987
Q ss_pred cccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEECCEEEEEEcccCcccchhhh
Q 020921 180 SALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDEVS 259 (320)
Q Consensus 180 ~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav~aV~~GkLYTL~aqtpEkRW~~~~ 259 (320)
+.|| . ++.+++++||++++|++||++||+|||.+|.+ ++++++||+|++++|+|||||||++|+||+||+
T Consensus 174 ~~Gf-~-p~~vata~Lleas~re~dGk~YY~lE~~~~~a-----d~d~~~RH~LatatV~~GkLYtl~aqa~EkRW~--- 243 (260)
T PLN00042 174 EGGF-D-ANAVATAAVLESSTQEVGGKPYYYLSVLTRTA-----DGDEGGKHQLITATVSDGKLYICKAQAGDKRWF--- 243 (260)
T ss_pred ccCc-C-cccccceeEEEeeeEEeCCeEEEEEEEEEecC-----CCCCCCceEEEEEEEECCEEEEEEecCchhhhh---
Confidence 3444 3 56677899999999999999999999999854 788999999999999999999999999999999
Q ss_pred hcccccccccccccccccccchhhHHHhhh-hhHHHHhhceeee
Q 020921 260 LFLSTRAHTHKCNNKYLRQTKDHVYVMMQM-GPFLEKSVASFHL 302 (320)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~SF~l 302 (320)
|+ +.+|+++++||+|
T Consensus 244 ----------------------------K~~~k~l~~v~~SFsV 259 (260)
T PLN00042 244 ----------------------------KGARKFVEGAASSFSV 259 (260)
T ss_pred ----------------------------HHHHHHHHHHHhceec
Confidence 88 6689999999987
No 3
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=100.00 E-value=5.7e-36 Score=279.69 Aligned_cols=141 Identities=16% Similarity=0.291 Sum_probs=122.4
Q ss_pred CCCceEEeccCCCCCcccc-------------ccccccccccccCCCCCCCCCcceEEe-----e--cccccccceeeEE
Q 020921 89 EINAYTYLYPMELPSKKFL-------------FKWVESRKPERYSSAAPLSPNARLRIV-----S--ERVDIIDNLIISV 148 (320)
Q Consensus 89 ~~dGYsFlYP~~W~s~ev~-------------~~G~d~rf~D~~~s~~pLs~n~rvrIV-----s--e~~si~dnl~VsV 148 (320)
+..||+|+||.+|...+|. ++|+|++|+|.++ +|++|+|. + +.++|+|
T Consensus 103 ~i~gY~FlyP~gW~~v~Vs~~~sGnycqp~c~~p~~dv~F~D~~d------gnVSVIVSPV~r~t~k~~~sIeD------ 170 (263)
T PLN00067 103 NVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDEKQ------GKVQVVASPLIRLTNKPNATIEE------ 170 (263)
T ss_pred CcccceEeCCCCCcCccccccccCccccccccCCCceEEEeCCCC------CCEEEEEecccccccCCCCChHH------
Confidence 6889999999999855553 3469999999665 67778874 2 5589999
Q ss_pred EeCCChhhhhcccccccccHHHHHhhhcccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCC
Q 020921 149 TIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNL 228 (320)
Q Consensus 149 slGpP~~~Fl~~~d~~~w~g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~ 228 (320)
||+|+++ ++.|++.+++. .++ +++||+|++++.||++||+|||.+ +.+++
T Consensus 171 -lGsPeeV-----------l~~Lg~~v~g~--~~~--------~~eLLeAs~re~dGktYY~~E~~t--------p~a~~ 220 (263)
T PLN00067 171 -IGSPEKL-----------IASLGPFVTGN--SYD--------PDELLETSVEKIGDQTYYKYVLET--------PFALT 220 (263)
T ss_pred -ccCHHHH-----------HHHhhHHhhcC--CCC--------CcceEEeeeEeeCCeEEEEEEEEe--------cCCCC
Confidence 9999976 88898888862 222 679999999999999999999999 66779
Q ss_pred cceEEEEEEEECCEEEEEEcccCcccchhhhhcccccccccccccccccccchhhHHHhhhhhHHHHhhceeee
Q 020921 229 YRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHL 302 (320)
Q Consensus 229 ~RH~Lav~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l 302 (320)
+||+||+++|++|+||||++|++|+||+ |+++.|+++++||++
T Consensus 221 gRHnLataTV~~GkLYtf~asanEkRW~-------------------------------K~k~~l~~V~dSFsV 263 (263)
T PLN00067 221 GSHNLAKATAKGNTVVLFVVSASDKQWQ-------------------------------SSEKTLKAILDSFQA 263 (263)
T ss_pred CceEEEEEEEECCEEEEEEecCCHHHHH-------------------------------HHHHHHHHHHHhccC
Confidence 9999999999999999999999999999 999999999999985
No 4
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=100.00 E-value=1.7e-36 Score=265.63 Aligned_cols=155 Identities=24% Similarity=0.465 Sum_probs=134.5
Q ss_pred ccccCccceecCCCceEEeccCCCCCccccccccccccccccCCCCCCCCCcceEEe--ecccccccceeeEEEeCCChh
Q 020921 78 GEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIV--SERVDIIDNLIISVTIGPPNV 155 (320)
Q Consensus 78 e~a~~f~~~~D~~dGYsFlYP~~W~s~ev~~~G~d~rf~D~~~s~~pLs~n~rvrIV--se~~si~dnl~VsVslGpP~~ 155 (320)
+...+|..|.|+.+||+|+||.+|. ++...|++++|+|.++.. +|++|.|. ....+|.| ||+|++
T Consensus 18 ~~~~~~~~y~d~~~~y~f~~P~gW~--~~~~~G~~v~f~d~~~~~----~nvsV~v~p~~~~~sl~~-------lGs~~~ 84 (175)
T PF01789_consen 18 EASTGFQPYTDSDDGYSFLYPSGWE--EVDVSGADVVFRDPIDAD----ENVSVVVSPVPKDFSLED-------LGSPEE 84 (175)
T ss_dssp T--SSEEEEEECTTTEEEEEETTEE--EEESTTEEEEEEETTETT----SEEEEEEEE-STS-SGGG-------G-SHHH
T ss_pred cCCCCceEEEcCCCCEEEECCCCCe--ecCCCCeEEEEECccccc----ceEEEEEEecCCcCchhh-------cCCHHH
Confidence 4456799999999999999999996 666699999999999854 56778875 44448999 999998
Q ss_pred hhhcccccccccHHHHHhhhcccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCC-CCcceEEE
Q 020921 156 QFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEP-NLYRHYVA 234 (320)
Q Consensus 156 ~Fl~~~d~~~w~g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~-e~~RH~La 234 (320)
+ ++.+++..++++++++ .++||++++++.||++||+|||.++ .+ +..||+|+
T Consensus 85 v-----------a~~l~~~~~~~~~~~~--------~a~li~a~~~~~~g~~yY~~Ey~~~--------~~~~~~rh~l~ 137 (175)
T PF01789_consen 85 V-----------AERLLNGELASPGSGR--------EAELISASEREVDGKTYYEYEYTVQ--------SPNEGRRHNLA 137 (175)
T ss_dssp H-----------HHHHHHHCCCHCTSSE--------EEEEEEEEEEEETTEEEEEEEEEEE--------ETTEEEEEEEE
T ss_pred H-----------HHHHhhhhcccccCCc--------ceEEEEeeeeecCCccEEEEEEEec--------cCCCcccEEEE
Confidence 7 9999999999887765 7999999999999999999999994 34 48999999
Q ss_pred EEEEECCEEEEEEcccCcccchhhhhcccccccccccccccccccchhhHHHhhhhhHHHHhhceeeee
Q 020921 235 STAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLL 303 (320)
Q Consensus 235 v~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~ 303 (320)
+++++|||||||++|++|+||+ ++++.|+++++||+|+
T Consensus 138 ~~tv~~g~lY~l~~~a~e~~w~-------------------------------k~~~~l~~iv~SF~v~ 175 (175)
T PF01789_consen 138 VVTVKNGKLYTLTAQAPESRWD-------------------------------KVEPKLRKIVDSFRVY 175 (175)
T ss_dssp EEEEETTEEEEEEEEEEHHHHH-------------------------------TCHHHHHHHHHC-EE-
T ss_pred EEEEECCEEEEEEEEcCHHHHH-------------------------------HHHHHHHHHHhcEEeC
Confidence 9999999999999999999999 9999999999999984
No 5
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=99.97 E-value=1.2e-31 Score=251.70 Aligned_cols=186 Identities=17% Similarity=0.291 Sum_probs=136.8
Q ss_pred eeecCCCCCccCCchhhHHHHHHHHhhh---hccCCCCC--C-cc----------c-cccCccceec-------------
Q 020921 39 CSCASSKPIQQNGFCRRDLVLFGLSSSL---SLGFPTPG--S-VA----------G-EDVKMASFVD------------- 88 (320)
Q Consensus 39 ~~~~~~~~~~~~~~~rRr~~l~gl~~~~---a~~~p~~~--a-~a----------e-~a~~f~~~~D------------- 88 (320)
|+|..+.........+||-+|+.+++++ +...|+.+ + +| + .+.+|+.|.-
T Consensus 31 ~~~~~~~~~~~~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~ 110 (262)
T PLN00066 31 VRIADEETEDVATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWS 110 (262)
T ss_pred hhhcchhhhhhcchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCcc
Confidence 3344334444555677887776444331 23344332 2 22 1 1234555554
Q ss_pred CCCceEEeccCCCCCcccc-----ccccccccccccCCCCCCCCCcceEEe--e-------cccccccceeeEEEeCCCh
Q 020921 89 EINAYTYLYPMELPSKKFL-----FKWVESRKPERYSSAAPLSPNARLRIV--S-------ERVDIIDNLIISVTIGPPN 154 (320)
Q Consensus 89 ~~dGYsFlYP~~W~s~ev~-----~~G~d~rf~D~~~s~~pLs~n~rvrIV--s-------e~~si~dnl~VsVslGpP~ 154 (320)
+...|+|+||.+|..+.|. .+|+|.||.+ +.. +|++|.|. . ++++|+| ||+|+
T Consensus 111 ~i~~Y~F~yP~GW~ev~VS~~d~gg~~vd~Rf~~--~~~----~nvsVvVspv~rla~~~~~~~sI~d-------LGspe 177 (262)
T PLN00066 111 EITPYSFKVPQGWEEVPVSIADLGGTEIDLRFAS--DKE----GRLKVVVAPVLRFADNLGDNATIEE-------IGPPE 177 (262)
T ss_pred ccCCeEEECCCCCeEeecccccCCCCceEEEecc--CCC----ccEEEEEeccccccccccCCCChHH-------cCCHH
Confidence 4578999999999855554 2345666666 443 55667774 2 7889999 99999
Q ss_pred hhhhcccccccccHHHHHhhhcccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEE
Q 020921 155 VQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVA 234 (320)
Q Consensus 155 ~~Fl~~~d~~~w~g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~La 234 (320)
++ ++.+++.+++.+. ++++||+|.+++.||++||+||| + ||+|+
T Consensus 178 eV-----------i~~l~~~v~g~~~----------~e~eLl~a~~re~dGktYY~~E~--~-------------rH~La 221 (262)
T PLN00066 178 KV-----------ISGFGPELIGEPV----------EEGKVLSMEVAEHSGRTYYQFEL--P-------------PHTLV 221 (262)
T ss_pred HH-----------HHHHHHHhcCCCc----------cccceeEeeeeecCCcEEEEEEE--e-------------CceEE
Confidence 87 8888888886443 27899999999999999999999 2 89999
Q ss_pred EEEEECCEEEEEEcccCcccchhhhhcccccccccccccccccccchhhHHHhhhhhHHHHhhceeeeeC
Q 020921 235 STAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLLP 304 (320)
Q Consensus 235 v~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~~ 304 (320)
++||.+||||||++|+||+||+ +++..|+++++||+++.
T Consensus 222 saTV~~GrLYt~~asape~rW~-------------------------------k~~~~lr~v~dSF~V~~ 260 (262)
T PLN00066 222 TATAAGNRVYIFSVTANGLQWK-------------------------------RHYKDLKRIAKSFRVVT 260 (262)
T ss_pred EEEEECCEEEEEEeecchHhhH-------------------------------HHHHHHHHHhhceeeec
Confidence 9999999999999999999999 99999999999999964
No 6
>PLN03152 hypothetical protein; Provisional
Probab=99.94 E-value=2.2e-26 Score=211.62 Aligned_cols=175 Identities=22% Similarity=0.295 Sum_probs=121.3
Q ss_pred hhhHHHHHHHH---hhhhccCCCCCCccccccC----ccc-------eecCCCceEEeccCCCCCccc---cccc-----
Q 020921 53 CRRDLVLFGLS---SSLSLGFPTPGSVAGEDVK----MAS-------FVDEINAYTYLYPMELPSKKF---LFKW----- 110 (320)
Q Consensus 53 ~rRr~~l~gl~---~~~a~~~p~~~a~ae~a~~----f~~-------~~D~~dGYsFlYP~~W~s~ev---~~~G----- 110 (320)
.||+.+|-.++ .+++.-.|...+++++.+. +.- +.--++||+.-||-.+. +-+ ++..
T Consensus 32 ~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~g~gf~~~~pp~f~-di~e~~~~~~g~~~y 110 (241)
T PLN03152 32 SRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFYGDGFSIRVPPSFE-DIMEPEDYNAGLSLY 110 (241)
T ss_pred cccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhhCCceEEeCCCChh-hhcChhhccccccee
Confidence 46777762222 2233444566667665443 222 23368999999999883 111 1211
Q ss_pred ----cccccccccCCCCCCCCCcceEEe--e-------cccccccceeeEEEeCCChhhhhcccccccccHHHHHhhhcc
Q 020921 111 ----VESRKPERYSSAAPLSPNARLRIV--S-------ERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVADSVLS 177 (320)
Q Consensus 111 ----~d~rf~D~~~s~~pLs~n~rvrIV--s-------e~~si~dnl~VsVslGpP~~~Fl~~~d~~~w~g~~vak~vLa 177 (320)
-..-|.-||.|+--. ||++|+|. . +.+||.| ||+|+|+ | .+|.
T Consensus 111 g~~akp~~~~aRf~s~D~s-EnVSVVIspv~~LK~tfle~kDLtD-------LGsp~EV-----------g-----kv~v 166 (241)
T PLN03152 111 GDKAKPRTFAARFASPDGS-EVLSVVIRPSNQLKITFLEAKDITD-------LGSLKEA-----------A-----KIFV 166 (241)
T ss_pred cCCCCCcceeeeecCCCCC-ceEEEEEecCccccccccccCChhH-------cCCHHHH-----------H-----HhhC
Confidence 122334456655433 78888885 3 8899999 9999988 5 4455
Q ss_pred cccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEECCEEEEEEcccCcccchh
Q 020921 178 DKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSISASTLGKQWDE 257 (320)
Q Consensus 178 ~~~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav~aV~~GkLYTL~aqtpEkRW~~ 257 (320)
+.++.++ .+.+++. +++.|||+||+|||.+ + +||+|++++|++||||||++|++|+||+
T Consensus 167 P~g~~~~-------saR~iel-~~E~dGKtYY~lEy~v--------~----~RH~LaTVaVsrGKLYTl~aSt~EkRW~- 225 (241)
T PLN03152 167 PGGATLY-------SARTIKV-KEEEGIRTYYFYEFGR--------D----EQHVALVATVNSGKAYIAGATAPESKWD- 225 (241)
T ss_pred CCccccc-------ccceeee-eeecCCceeEEEEEEe--------C----CcEEEEEEEEcCCeEEEEecCCchhchH-
Confidence 5542111 1233333 4589999999999999 4 8999999999999999999999999999
Q ss_pred hhhcccccccccccccccccccchhhHHHhhhhhHHHHhhceeeee
Q 020921 258 VSLFLSTRAHTHKCNNKYLRQTKDHVYVMMQMGPFLEKSVASFHLL 303 (320)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~ 303 (320)
|++..|+.+++||+||
T Consensus 226 ------------------------------Kvk~kfr~aa~SFsV~ 241 (241)
T PLN03152 226 ------------------------------DDGVKLRSAAISLTVL 241 (241)
T ss_pred ------------------------------HHHHHHHHHHhheeeC
Confidence 9999999999999986
No 7
>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=96.07 E-value=0.11 Score=43.37 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=58.8
Q ss_pred cccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEEC-CEEEEEEcccCcccchhhhhcccccccccc
Q 020921 192 ESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAERE-GYLYSISASTLGKQWDEVSLFLSTRAHTHK 270 (320)
Q Consensus 192 ~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav~aV~~-GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~ 270 (320)
.-.+++...-+++|.+-+.++|.- ......-|+..++...+ +++|+|+..++....+
T Consensus 60 ~~~~~~~~~~~l~~~~a~~l~~~~--------~~~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~-------------- 117 (130)
T PF08786_consen 60 GFQLVERQPITLGGRPARELEYSF--------RSGGQPVYQRQAAVLLPGRRVLVFTYTAPGPFTE-------------- 117 (130)
T ss_dssp T-EEEEEEEEEETTEEEEEEEEEE--------EETTCEEEEEEEEEEEC-CCEEEEEEEEECCCHH--------------
T ss_pred CcEEEeeEEEEeCCCCeEEEEEEE--------eeCCEEEEEEEEEEEECCCEEEEEEEEcCCCCCH--------------
Confidence 456777666678999999999999 45566788888888888 9999999999999999
Q ss_pred cccccccccchhhHHHhhhhhHHHHhhcee
Q 020921 271 CNNKYLRQTKDHVYVMMQMGPFLEKSVASF 300 (320)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~SF 300 (320)
.-++.++++++||
T Consensus 118 -----------------~~~~~~~~i~~Sf 130 (130)
T PF08786_consen 118 -----------------EQRAHWEAILKSF 130 (130)
T ss_dssp -----------------HHHHHHHHHHCT-
T ss_pred -----------------HHHHHHHHHHhcC
Confidence 8889999999998
No 8
>PRK11615 hypothetical protein; Provisional
Probab=78.93 E-value=56 Score=30.44 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=57.4
Q ss_pred eeEEEeCCChhhhhcccccccccHHHHHhhhcccccccccccccccccccEEeeeec--eeCCeeeEEEEEEEecCCCCC
Q 020921 145 IISVTIGPPNVQFLKSKDKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTS--KVDGEPYWFYEYLIRKSPTNL 222 (320)
Q Consensus 145 ~VsVslGpP~~~Fl~~~d~~~w~g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~r--e~dGk~YY~lEy~vr~sp~~~ 222 (320)
.|.|++|+...++|. .++++...+ ||-+.+++--.+++ +++|++...++-.+
T Consensus 83 avIVi~gD~~~~~Ld----------~la~rl~~q---------Qr~rdp~lqvvsnK~i~i~G~~~qQLDS~~------- 136 (185)
T PRK11615 83 AVIVILGDDTNEDLA----------VLAKRLEDQ---------QRSRDPQLQVVTNKAIELKGHKLQQLDSII------- 136 (185)
T ss_pred EEEEEeCCCChhhHH----------HHHHHHHHH---------HHhhCcCceeecceeEEECCeeeEEeeeee-------
Confidence 355667877766543 556655543 33335666555555 46999999999888
Q ss_pred CCCCCCcceEEEEEEEECCEEEEEEcccCcccch
Q 020921 223 GQEPNLYRHYVASTAEREGYLYSISASTLGKQWD 256 (320)
Q Consensus 223 a~~~e~~RH~Lav~aV~~GkLYTL~aqtpEkRW~ 256 (320)
......--+=.+.+..|++|-||.+-.|-+-=.
T Consensus 137 -t~~Gqk~~SSvvL~~v~~rl~tlQitlpA~nqq 169 (185)
T PRK11615 137 -SAKGQTAYSSVVLGKVDNQLLTMQITLPADNQQ 169 (185)
T ss_pred -ecCCceEEEEEEEEeeCCeEEEEEEecCCCCHH
Confidence 333333445567788999999999988877666
No 9
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=69.32 E-value=6.2 Score=24.85 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=19.7
Q ss_pred EEEEEECCEEEEEEcccCcccch
Q 020921 234 ASTAEREGYLYSISASTLGKQWD 256 (320)
Q Consensus 234 av~aV~~GkLYTL~aqtpEkRW~ 256 (320)
..++-.+|+||.+++.+++.+|.
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEE
Confidence 34456789999999999999997
No 10
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=66.39 E-value=61 Score=29.15 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=59.7
Q ss_pred cEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCC-cceEEEEEEEECCEEEEEEcccCcccchhhhhcccccccccccc
Q 020921 194 SVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNL-YRHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCN 272 (320)
Q Consensus 194 ~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~-~RH~Lav~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~ 272 (320)
+|..-.+-+++|..=...+|.-- + ...++ .=|++.++..+++++-+|++.++-.-=+
T Consensus 69 ~~~~~~e~~v~~~aa~~~~y~w~-~-----~~~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp---------------- 126 (147)
T COG5435 69 ELHHRREIEVGGAAAPLLDYQWT-S-----PEGEQRRVQQRQVFIERGDTVLIFTLTTPGEFTP---------------- 126 (147)
T ss_pred EEeeccccccCccccceeEEEee-c-----CCCCCceEEEEEeecccCCeEEEEEecCCCCCCH----------------
Confidence 55555566789999999999882 1 12243 3467788788888999999999998888
Q ss_pred cccccccchhhHHHhhhhhHHHHhhceeeeeCCCC
Q 020921 273 NKYLRQTKDHVYVMMQMGPFLEKSVASFHLLPPTD 307 (320)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~~~~~ 307 (320)
+-++..+++|.||...|+--
T Consensus 127 ---------------~q~~~~~~~I~Sf~p~~~~~ 146 (147)
T COG5435 127 ---------------SQKKAWEQVIQSFVPNPPEA 146 (147)
T ss_pred ---------------HHHHHHHHHHHhcCCCCCCC
Confidence 88999999999999887743
No 11
>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein [].
Probab=65.28 E-value=75 Score=28.91 Aligned_cols=73 Identities=19% Similarity=0.137 Sum_probs=48.4
Q ss_pred cEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEECC--EEEEEEcccCcccchhhhhccccccccccc
Q 020921 194 SVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREG--YLYSISASTLGKQWDEVSLFLSTRAHTHKC 271 (320)
Q Consensus 194 ~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav~aV~~G--kLYTL~aqtpEkRW~~~~~~~~~~~~~~~~ 271 (320)
+-++++.-+.+|-+=+.+|-.-+. ++-.....+-.|+...++ +|-.|++++.+.+=.
T Consensus 100 ~~~~~s~~~~~GfpS~~i~GtY~~------~g~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~qa~--------------- 158 (175)
T PF10738_consen 100 RELDGSPSDFSGFPSSQIEGTYDK------DGMRLHTSQRTVVIPGDDQRYLVQLTVTTTADQAV--------------- 158 (175)
T ss_pred ccccCCccccCCCceeEEEEEEee------CCEEeEeEEEEEEEeCCCcEEEEEEEeeccccchh---------------
Confidence 456777777899998888844311 222222223344444455 666788898888877
Q ss_pred ccccccccchhhHHHhhhhhHHHHhhceeeee
Q 020921 272 NNKYLRQTKDHVYVMMQMGPFLEKSVASFHLL 303 (320)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~v~SF~l~ 303 (320)
...+..+.+++.|++.
T Consensus 159 ----------------~~~~a~~aI~~g~~It 174 (175)
T PF10738_consen 159 ----------------ALADATEAIDEGFTIT 174 (175)
T ss_pred ----------------hhhhHHHHHHcCCEec
Confidence 7888999999999874
No 12
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=60.98 E-value=6.4 Score=26.43 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=19.4
Q ss_pred EEEEECCEEEEEEcccCcccch
Q 020921 235 STAEREGYLYSISASTLGKQWD 256 (320)
Q Consensus 235 v~aV~~GkLYTL~aqtpEkRW~ 256 (320)
.++-.+|+||-|++.+++..|.
T Consensus 4 ~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 4 YVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEETTTSEEEEEETTTTSEEEE
T ss_pred EEeCCCCEEEEEECCCCCEEEe
Confidence 3446799999999999999999
No 13
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=47.69 E-value=2.2e+02 Score=25.83 Aligned_cols=95 Identities=15% Similarity=0.214 Sum_probs=44.6
Q ss_pred ccceecCCCceEEeccCCCCCccccccccccccccccCCCCCCCCCcceEEeecccccccceeeEEEe-CCChhhhhccc
Q 020921 83 MASFVDEINAYTYLYPMELPSKKFLFKWVESRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTI-GPPNVQFLKSK 161 (320)
Q Consensus 83 f~~~~D~~dGYsFlYP~~W~s~ev~~~G~d~rf~D~~~s~~pLs~n~rvrIVse~~si~dnl~VsVsl-GpP~~~Fl~~~ 161 (320)
|++|+.++.=|+..||.+|- +++ .|-+++ ...++..-++|+-||-== |... +
T Consensus 1 mkKfiSpg~WFS~~YP~~W~--EfE-D~E~sf------------------lFYnp~~WTGNfRISayk~~~~~--y---- 53 (153)
T PF12712_consen 1 MKKFISPGAWFSMEYPADWN--EFE-DGEGSF------------------LFYNPDQWTGNFRISAYKGGSAQ--Y---- 53 (153)
T ss_dssp -EEEE-GGG-EEEEE-TT-E--EE----TTEE------------------EEE-SSS---EEEEEEEE--STT--H----
T ss_pred CCcccCCCceEEEecCCCcc--hhc-cCCcce------------------EEEChHHhcCceEEEEEeccccc--c----
Confidence 57888999999999999996 443 332221 012222345666666543 2222 3
Q ss_pred ccccccHHHHHhhhcccccccccccccccccccEEeeeecee--CCeeeEEEEEEE
Q 020921 162 DKSTWNAKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKV--DGEPYWFYEYLI 215 (320)
Q Consensus 162 d~~~w~g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~re~--dGk~YY~lEy~v 215 (320)
|++..++-|....+ .+.|...++--|.+.+- ....||+=-.-+
T Consensus 54 ------gk~~i~~EL~en~~-----a~~vkvg~~~caYs~E~f~eeg~~YtsH~Wv 98 (153)
T PF12712_consen 54 ------GKECIRQELKENPS-----AKLVKVGNWECAYSKEMFQEEGAYYTSHLWV 98 (153)
T ss_dssp ------HHHHHHHHHHH-TT------EEEEETTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred ------hHHHHHHHHHhCCC-----cceEEeccEEEEEEhhhhhccCeeEEEEEEE
Confidence 77888887765433 13334455555555542 333455544444
No 14
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=34.12 E-value=84 Score=25.49 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=33.1
Q ss_pred ceEEEEEEEECCEEEEEEcccCcccchhhhhccccccccccccccccc-ccchhh
Q 020921 230 RHYVASTAEREGYLYSISASTLGKQWDEVSLFLSTRAHTHKCNNKYLR-QTKDHV 283 (320)
Q Consensus 230 RH~Lav~aV~~GkLYTL~aqtpEkRW~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 283 (320)
-++|++ ..+|.|.-=.-..++.-++.+... .+.+.-..+|.|||. ...|++
T Consensus 45 GkYls~--~~~G~v~~~~~~~~~~~~F~i~~~-~~~~~~~~~nGkYl~~~~~g~l 96 (111)
T PF06268_consen 45 GKYLSV--DSDGSVVADSETPGPDEFFEIEWH-GGKVALRASNGKYLSAGPNGQL 96 (111)
T ss_dssp SEEEEE--ETTSEEEEEESSSSGGGCBEEEEE-TTEEEEECTTSCEEEEETTTEE
T ss_pred CCEEEE--cCCCeEEecCCCCCCCcEEEEEEC-CCEEEEECCCCCEEeeCCCCeE
Confidence 456664 567775554444456666656655 666666779999999 555655
No 15
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=33.55 E-value=32 Score=26.99 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=14.5
Q ss_pred cEEeeeeceeCCeeeEE
Q 020921 194 SVLDAHTSKVDGEPYWF 210 (320)
Q Consensus 194 ~LldA~~re~dGk~YY~ 210 (320)
.||++.+.++||++|+.
T Consensus 3 KvLskG~h~IdGk~y~v 19 (65)
T PF09211_consen 3 KVLSKGEHTIDGKKYYV 19 (65)
T ss_dssp EEE-SEEEEETTEEEEE
T ss_pred ccccCccEEECCEEEEe
Confidence 58999999999999984
No 16
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.07 E-value=1.3e+02 Score=30.70 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCeeeEEEEEEE--------ecCCCCCC-CCCCCcceEEEEEEEECCEEEEEEcccCcccch
Q 020921 204 DGEPYWFYEYLI--------RKSPTNLG-QEPNLYRHYVASTAEREGYLYSISASTLGKQWD 256 (320)
Q Consensus 204 dGk~YY~lEy~v--------r~sp~~~a-~~~e~~RH~Lav~aV~~GkLYTL~aqtpEkRW~ 256 (320)
+|+.=|.++... ..+|.... ..-+...+.+..++-.+|+||-|++.+++.+|.
T Consensus 265 tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 265 TGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred CCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 799999987532 11122111 001244566777777899999999999999998
No 17
>smart00043 CY Cystatin-like domain. Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.
Probab=21.03 E-value=90 Score=24.78 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=42.7
Q ss_pred HHHHHhhhcccccccccccccccccccEEeeeeceeCCeeeEEEEEEEecCCCCCCCCCCCcceEEEEEEEECCEEEEEE
Q 020921 168 AKDVADSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHYVASTAEREGYLYSIS 247 (320)
Q Consensus 168 g~~vak~vLa~~~sgR~~~g~rv~~a~LldA~~re~dGk~YY~lEy~vr~sp~~~a~~~e~~RH~Lav~aV~~GkLYTL~ 247 (320)
.+++++.+++..+++. ...-+....+|+.|.+.++.|..|+ +++.++.. . -.... ..+.-+...++..-+|.
T Consensus 16 ~~~~~~~a~~~~N~~~-~~~~~~~~~~v~~a~~QvvaG~~y~-l~~~v~~t--~---C~k~~-~~~~~C~~~~~~~~~C~ 87 (107)
T smart00043 16 VQEAADFAVAEYNKKS-NDKYELRVIKVVSAKSQVVAGTNYY-LKVEVGET--N---CKKLS-VDLENCPFLDQGEKFCT 87 (107)
T ss_pred HHHHHHHHHHHHHHhc-ccchhhhhhhhheeeeeeecceEEE-EEEEEEec--e---eccCC-cccccCCCCCCCccEEE
Confidence 4455555554433221 0122222578999988889999876 78887421 1 00000 23333444333225666
Q ss_pred cccCcccch
Q 020921 248 ASTLGKQWD 256 (320)
Q Consensus 248 aqtpEkRW~ 256 (320)
+..-+..|.
T Consensus 88 ~~V~~~pw~ 96 (107)
T smart00043 88 AKVWEKPWE 96 (107)
T ss_pred EEEEecCCC
Confidence 666677785
Done!