BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020923
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 129/277 (46%), Gaps = 17/277 (6%)
Query: 46 DHMVHRGHGVFDTAAICDGY----LYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
H +H G VF+ + ++ L +H+ R SA + ++++PF + L + +
Sbjct: 26 SHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEV 85
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF----VSKGVKVITSS 157
V + R +R G ++P+ + + V + + V KG ++ITSS
Sbjct: 86 VRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSS 145
Query: 158 IPIKPPQFGTVKSV---NYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKE 214
P K+ NY+ + L+KMEA GA A+ LD EG++AEG N+ FV ++
Sbjct: 146 WARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFV-RD 204
Query: 215 RLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVL 274
++ + L G T V+ +AK L E ++V T ++ A+E+ + G+
Sbjct: 205 GVIYALEHSVNLEGITRDSVIRIAKDLGYE-----VQVVRATRDQLYMADEVFMTGTAAE 259
Query: 275 VRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGPP 311
V PV D + IG G GP+A L ++ LE + P
Sbjct: 260 VTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRP 296
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 122/270 (45%), Gaps = 31/270 (11%)
Query: 47 HMVHRGHGVFD---TAAICDG--YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
H +H G GVF+ DG ++ L +H R++ SA + ++ +PFD+++L
Sbjct: 50 HTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDV 109
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF--------VSKGVKV 153
V + LR + G +S G +T +V + P+ ++KG++V
Sbjct: 110 VRENKLESCYLRPIIWIGSEKLGVSAKG---NTIHVAIAA--WPWGAYLGEEGLAKGIRV 164
Query: 154 ITSSIPIKPPQFGTVK---SVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF 210
TSS V+ S Y+ ++L+ EA G A+ LD +G+++EG N
Sbjct: 165 KTSSFTRHHVNVSMVRAKASGWYVNSILANQEATADGYDEALLLDVDGYVSEGSGENFFL 224
Query: 211 VTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMIL 268
V + +L P L G T V+TLAK GI+V +T +E A+E
Sbjct: 225 VNRGKLY-TPDLASCLDGITRDTVITLAKEA-------GIEVIEKRITRDEVYTADEAFF 276
Query: 269 LGSGVLVRPVVQWDEQVIGNGKEGPIAQAL 298
G+ V P+ + D + IG G GPI + L
Sbjct: 277 TGTAAEVTPIRELDNRTIGGGARGPITEKL 306
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 123/266 (46%), Gaps = 23/266 (8%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
I +D G GV++ + +G ++ +++H+DR+ SA +I +P+ + ++L +
Sbjct: 17 IDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQ---STFYVIVI----QDDSPF--VSKGVK 152
V + G + + ++ G SP HQ +T ++I ++ P + KGVK
Sbjct: 77 VEKNELNTGHIYFQVTRGT-----SP-RAHQFPENTVKPVIIGYTKENPRPLENLEKGVK 130
Query: 153 VITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVT 212
T I+ + +KS+N L VL+K EA E G + AI L + EG + NV +
Sbjct: 131 A-TFVEDIRWLRCD-IKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTEGSSSNVFGIK 187
Query: 213 KERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSG 272
L P + IL G T V+ A + +K T E K +E+ + +
Sbjct: 188 DGILYTHPANNMILKGITRDVVIACANEINMP-----VKEIPFTTHEALKMDELFVTSTT 242
Query: 273 VLVRPVVQWDEQVIGNGKEGPIAQAL 298
+ PV++ D ++I +GK G + L
Sbjct: 243 SEITPVIEIDGKLIRDGKVGEWTRKL 268
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 123/266 (46%), Gaps = 23/266 (8%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
I +D G GV++ + +G ++ +++H+DR+ SA +I +P+ + ++L +
Sbjct: 17 IDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQ---STFYVIVI----QDDSPF--VSKGVK 152
V + G + + ++ G SP HQ +T ++I ++ P + KGVK
Sbjct: 77 VEKNELNTGHIYFQVTRGT-----SP-RAHQFPENTVKPVIIGYTKENPRPLENLEKGVK 130
Query: 153 VITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVT 212
T I+ + +KS+N L VL+K EA E G + AI L + EG + NV +
Sbjct: 131 A-TFVEDIRWLRCD-IKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTEGSSSNVFGIK 187
Query: 213 KERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSG 272
L P + IL G T V+ A + +K T E K +E+ + +
Sbjct: 188 DGILYTHPANNMILKGITRDVVIACANEINMP-----VKEIPFTTHEALKMDELFVTSTT 242
Query: 273 VLVRPVVQWDEQVIGNGKEGPIAQAL 298
+ PV++ D ++I +GK G + L
Sbjct: 243 SEITPVIEIDGKLIRDGKVGEWTRKL 268
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 123/266 (46%), Gaps = 23/266 (8%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
I +D G GV++ + +G ++ +++H+DR+ SA +I +P+ + ++L +
Sbjct: 17 IDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQ---STFYVIVI----QDDSPF--VSKGVK 152
V + G + + ++ G SP HQ +T ++I ++ P + KGVK
Sbjct: 77 VEKNELNTGHIYFQVTRGT-----SP-RAHQFPENTVKPVIIGYTKENPRPLENLEKGVK 130
Query: 153 VITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVT 212
T I+ + +KS+N L VL+K EA E G + AI L + EG + NV +
Sbjct: 131 A-TFVEDIRWLRCD-IKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTEGSSSNVFGIK 187
Query: 213 KERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSG 272
L P + IL G T V+ A + +K T E K +E+ + +
Sbjct: 188 DGILYTHPANNMILKGITRDVVIACANEINMP-----VKEIPFTTHEALKMDELFVTSTT 242
Query: 273 VLVRPVVQWDEQVIGNGKEGPIAQAL 298
+ PV++ D ++I +GK G + L
Sbjct: 243 SEITPVIEIDGKLIRDGKVGEWTRKL 268
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 123/266 (46%), Gaps = 23/266 (8%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
I +D G GV++ + +G ++ +++H+DR+ SA +I +P+ + ++L +
Sbjct: 17 IDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQ---STFYVIVI----QDDSPF--VSKGVK 152
V + G + + ++ G SP HQ +T ++I ++ P + KGVK
Sbjct: 77 VEKNELNTGHIYFQVTRGT-----SP-RAHQFPENTVKPVIIGYTKENPRPLENLEKGVK 130
Query: 153 VITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVT 212
T I+ + +KS+N L VL+K EA E G + AI L + +G + NV +
Sbjct: 131 A-TFVEDIRWLRCD-IKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTKGSSSNVFGIK 187
Query: 213 KERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSG 272
L P + IL G T V+ A + +K T E K +E+ + +
Sbjct: 188 DGILYTHPANNMILKGITRDVVIACANEINMP-----VKEIPFTTHEALKMDELFVTSTT 242
Query: 273 VLVRPVVQWDEQVIGNGKEGPIAQAL 298
+ PV++ D ++I +GK G + L
Sbjct: 243 SEITPVIEIDGKLIRDGKVGEWTRKL 268
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 122/266 (45%), Gaps = 23/266 (8%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
I +D G GV++ + +G ++ +++H+DR+ SA +I +P+ + ++L +
Sbjct: 17 IDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQ---STFYVIVI----QDDSPF--VSKGVK 152
V + G + + ++ G SP HQ +T ++I ++ P + KGVK
Sbjct: 77 VEKNELNTGHIYFQVTRGT-----SP-RAHQFPENTVKPVIIGYTKENPRPLENLEKGVK 130
Query: 153 VITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVT 212
T I+ + +KS+N L VL+K EA E G + AI L + G + NV +
Sbjct: 131 A-TFVEDIRWLRCD-IKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTSGSSSNVFGIK 187
Query: 213 KERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSG 272
L P + IL G T V+ A + +K T E K +E+ + +
Sbjct: 188 DGILYTHPANNMILKGITRDVVIACANEINMP-----VKEIPFTTHEALKMDELFVTSTT 242
Query: 273 VLVRPVVQWDEQVIGNGKEGPIAQAL 298
+ PV++ D ++I +GK G + L
Sbjct: 243 SEITPVIEIDGKLIRDGKVGEWTRKL 268
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 122/266 (45%), Gaps = 23/266 (8%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
I +D G GV++ + +G ++ +++H+DR+ SA +I +P+ + ++L +
Sbjct: 17 IDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQ---STFYVIVI----QDDSPF--VSKGVK 152
V + G + + ++ G SP HQ +T ++I ++ P + KGVK
Sbjct: 77 VEKNELNTGHIYFQVTRGT-----SP-RAHQFPENTVKPVIIGYTKENPRPLENLEKGVK 130
Query: 153 VITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVT 212
T I+ + +KS+N L VL+K EA E G + AI L + EG + NV +
Sbjct: 131 A-TFVEDIRWLRCD-IKSLNLLGAVLAKQEAHEKGCYEAI-LHRNNTVTEGSSSNVFGIK 187
Query: 213 KERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSG 272
L P + I G T V+ A + +K T E K +E+ + +
Sbjct: 188 DGILYTHPANNMIAKGITRDVVIACANEINMP-----VKEIPFTTHEALKMDELFVTSTT 242
Query: 273 VLVRPVVQWDEQVIGNGKEGPIAQAL 298
+ PV++ D ++I +GK G + L
Sbjct: 243 SEITPVIEIDGKLIRDGKVGEWTRKL 268
>pdb|2ZGI|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
pdb|2ZGI|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
pdb|2ZGI|C Chain C, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
pdb|2ZGI|D Chain D, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase
Length = 246
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 99/243 (40%), Gaps = 28/243 (11%)
Query: 33 ITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRK 92
+ P A+ +P + ++ G VF T G L++HL R+ R A + P D
Sbjct: 4 LNGTPLALALP--EAFLYHGASVFTTLRAEGGRPLWLEEHLARLRRHALALGLSYPGDEA 61
Query: 93 SLRRI--LIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKG 150
L + L++ + C + LR+ + GV + P + Y +G
Sbjct: 62 FLEDLEALLRAFPKAPCLR--LRFTVGEGVRLSEARPYAPLPLSLY-----------REG 108
Query: 151 VKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF 210
V+V + + P K+ NYLP L+ EA + GAF + LD G + +G +
Sbjct: 109 VRVRLTGYRVHP-DLARYKTGNYLPYRLALEEARKEGAFEGLLLDAFGHVVDGSRTSPLL 167
Query: 211 VTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLG 270
+ L L+ + L G T ++V A+ L G++V ++L G
Sbjct: 168 FREGTLYLL---EGGLEGITREKVAEAARGL-------GLRVERGLFRPEGLRGHLLLAG 217
Query: 271 SGV 273
SGV
Sbjct: 218 SGV 220
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 107/271 (39%), Gaps = 32/271 (11%)
Query: 47 HMVHRGHGVFDTAAICDGY----LYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTV 102
H +H G VF+ D + ++ +H+ R+ SA + + + L +
Sbjct: 27 HALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVI 86
Query: 103 SASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVI------------QDDSPFVSKG 150
+N +R + G ++P + + + Q VS
Sbjct: 87 RKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSW 146
Query: 151 VKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF 210
+ ++IP G NYL ++L EA G I LD G+I+EG N+ F
Sbjct: 147 NRAAPNTIPTAAKAGG-----NYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENL-F 200
Query: 211 VTKERLLLMPQF-DKILSGCTAKRVLTLAKALVREGKLHGIKVGN--VTVEEGKKAEEMI 267
K+ +L P F L G T ++ LAK L GI+V ++ E A+E+
Sbjct: 201 EVKDGVLFTPPFTSSALPGITRDAIIKLAKEL-------GIEVREQVLSRESLYLADEVF 253
Query: 268 LLGSGVLVRPVVQWDEQVIGNGKEGPIAQAL 298
+ G+ + PV D +G G+ GP+ + +
Sbjct: 254 MSGTAAEITPVRSVDGIQVGEGRCGPVTKRI 284
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 107/271 (39%), Gaps = 32/271 (11%)
Query: 47 HMVHRGHGVFDTAAICDGY----LYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTV 102
H +H G VF+ D + ++ +H+ R+ SA + + + L +
Sbjct: 28 HALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVI 87
Query: 103 SASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVI------------QDDSPFVSKG 150
+N +R + G ++P + + + Q VS
Sbjct: 88 RKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSW 147
Query: 151 VKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF 210
+ ++IP G NYL ++L EA G I LD G+I+EG N+ F
Sbjct: 148 NRAAPNTIPTAAKAGG-----NYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENL-F 201
Query: 211 VTKERLLLMPQF-DKILSGCTAKRVLTLAKALVREGKLHGIKVGN--VTVEEGKKAEEMI 267
K+ +L P F L G T ++ LAK L GI+V ++ E A+E+
Sbjct: 202 EVKDGVLFTPPFTSSALPGITRDAIIKLAKEL-------GIEVREQVLSRESLYLADEVF 254
Query: 268 LLGSGVLVRPVVQWDEQVIGNGKEGPIAQAL 298
+ G+ + PV D +G G+ GP+ + +
Sbjct: 255 MSGTAAEITPVRSVDGIQVGEGRCGPVTKRI 285
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 112/243 (46%), Gaps = 14/243 (5%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
+ + D G G F TA + DG + L H+ R+ + I F + + + +T
Sbjct: 12 LAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDFWPQLEQEM--KT 69
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF---VSKGVKVITSSI 158
++A + G L+ +S G G S + +T + V + + ++G+ + S +
Sbjct: 70 LAAEQ-QNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSPV 128
Query: 159 PI-KPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLL 217
+ + P +K +N L VL + E+T A A+ LD EG++ E N+ F K ++
Sbjct: 129 RLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANL-FWRKGNVV 187
Query: 218 LMPQFDKI-LSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVR 276
P+ D+ ++G + + L+ + ++V ++EE +A+EM++ + + V
Sbjct: 188 YTPRLDQAGVNGIMRQFCIR----LLAQSSYQLVEV-QASLEESLQADEMVICNALMPVM 242
Query: 277 PVV 279
PV
Sbjct: 243 PVC 245
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
pdb|2Y4R|B Chain B, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
Length = 292
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 121/277 (43%), Gaps = 23/277 (8%)
Query: 37 PAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRR 96
PAA + D + + G G+F+T A+ G L++HL R+ ++ +P D +LR+
Sbjct: 30 PAAELSVRDRGLAY-GDGLFETLAVRAGTPRLLERHLARL--EEGCRRLAIPLDTAALRQ 86
Query: 97 ILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSP-----FVSKGV 151
L+ +A G + ++ G G +P +++ I+ P +GV
Sbjct: 87 ELLAFCAALG--DGVAKLIVTRGEGLRGYAPPA--EASPRRILSGSPRPAYPERHWQQGV 142
Query: 152 KVITSSIPI-KPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF 210
++ + + P +K +N L VL++ E + G + LD + EG N+
Sbjct: 143 RLFACRTRLAEQPLLAGLKHLNRLEQVLARAEWSDAGHAEGLMLDVHERVVEGVFSNLLL 202
Query: 211 VTKERLLLMPQFDKI-LSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILL 269
V + L+ P + ++G +L A EG + + +V++ E A+E+ L
Sbjct: 203 VL-DGTLVAPDLRRCGVAGVMRAELLERA-----EGIGVPLAIRDVSMAELATADEVFLC 256
Query: 270 GSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDM 306
S + PV DE V G+ + + L D + +D+
Sbjct: 257 NSQFGIWPVRALDEHVWPVGE---LTRKLQDQLRDDL 290
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 23/176 (13%)
Query: 151 VKVITSSIPIKPPQFGTVK-SVNYLPNVLSKMEAEETGAFAAIWLDG--EGFIAEGPNMN 207
V V T + P G K NY ++L++ EA E G +WLD +I E MN
Sbjct: 186 VWVSTEYVRACPGGTGAAKFGGNYAASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMN 245
Query: 208 VAFV----TKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKA 263
+ FV RL+ +L G T +L LA + G ++ + ++E +K
Sbjct: 246 IFFVLGSGGSARLVTPELSGSLLPGITRDSLLQLA---IDAG--FAVEERRIDIDEWQKK 300
Query: 264 E------EMILLGSGVLVRPVVQ----WDEQVIGNGKEGPIAQALLDLILEDMQSG 309
E+ G+ ++ PV + E I +G+ G + AL D L +Q G
Sbjct: 301 AAAGEITEVFACGTAAVITPVARVRHGASEFRIADGQPGEVTMALRD-TLTGIQRG 355
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 188 AFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDK-ILSGCTAKRVLTLAKALVREGK 246
+ I L G + EG NV F+ KE L+ P D IL G T + V+ LAK+L
Sbjct: 162 CYDVILLGLNGQVCEGSFSNV-FLVKEGKLITPSLDSGILDGITRENVIKLAKSL----- 215
Query: 247 LHGIKVGN--VTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLD 300
I V V V E +A+E L + V PV + +E + GP+ L +
Sbjct: 216 --EIPVEERVVWVWELFEADEXFLTHTSAGVVPVRRLNEHSFFEEEPGPVTATLXE 269
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 36 DPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPF 89
+P + DD + RG G+F+T I DG+ + +H +R SA++ + P
Sbjct: 30 NPNLPXVFWDDAALTRGDGIFETLLIRDGHACNVRRHGERFKASAALLGLPEPI 83
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 109 KGSLRYWLSAGVGDFQLSPVGCHQSTFYVI 138
KG W+ +GVGD L P H + F ++
Sbjct: 398 KGQYERWVISGVGDMMLHPFHIHGTQFRIL 427
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 109 KGSLRYWLSAGVGDFQLSPVGCHQSTFYVI 138
KG W+ +GVGD L P H + F ++
Sbjct: 398 KGQYERWVISGVGDMMLHPFHIHGTQFRIL 427
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 109 KGSLRYWLSAGVGDFQLSPVGCHQSTFYVI 138
KG W+ +GVGD L P H + F ++
Sbjct: 398 KGQYERWVISGVGDMMLHPFHIHGTQFRIL 427
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 109 KGSLRYWLSAGVGDFQLSPVGCHQSTFYVI 138
KG W+ +GVGD L P H + F ++
Sbjct: 398 KGQYERWVISGVGDMMLHPFHIHGTQFRIL 427
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 109 KGSLRYWLSAGVGDFQLSPVGCHQSTFYVI 138
KG W+ +GVGD L P H + F ++
Sbjct: 398 KGQYERWVISGVGDMMLHPFHIHGTQFRIL 427
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 109 KGSLRYWLSAGVGDFQLSPVGCHQSTFYVI 138
KG W+ +GVGD L P H + F ++
Sbjct: 350 KGQYERWVISGVGDMMLHPFHIHGTQFRIL 379
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 109 KGSLRYWLSAGVGDFQLSPVGCHQSTFYVI 138
KG W+ +GVGD L P H + F ++
Sbjct: 398 KGQYERWVISGVGDMMLHPFHIHGTQFRIL 427
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 234 VLTLAKAL-VREGKLHGIKVGNV-----TVEEGKKAEEMILLGSGVLVRPVVQWDEQV 285
VL L AL VR G+ +G + + ++ E ++L + + P QWDE++
Sbjct: 83 VLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERI 140
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 109 KGSLRYWLSAGVGDFQLSPVGCHQSTFYVI 138
KG W+ +GVGD L P H + F ++
Sbjct: 398 KGQYERWVISGVGDMLLHPFHIHGTQFRIL 427
>pdb|3IIB|A Chain A, Crystal Structure Of Peptidase M28 Precursor (Yp_926796.1)
From Shewanella Amazonensis Sb2b At 1.70 A Resolution
Length = 444
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 152 KVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEET---GAFAAIWLDGEGFIAEGPNMNV 208
K + S+ + + G S N + V +A+E GA W +G G I +G + +
Sbjct: 217 KEVVISLELGSERRGETTSYNVIAEVKGSTKADEIVLIGAHLDSWDEGTGAIDDGAGVAI 276
Query: 209 AFVTKERLLLMPQ 221
+ +L +PQ
Sbjct: 277 VTAAAKHILDLPQ 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,987,363
Number of Sequences: 62578
Number of extensions: 360045
Number of successful extensions: 829
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 794
Number of HSP's gapped (non-prelim): 28
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)