BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020924
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 180/329 (54%), Gaps = 15/329 (4%)
Query: 1 MALEKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNAR-LYELEKASENLKL 59
M + E VCVTGA GF+ SW+V LL R Y V T R+P++ K + L +L KA +L L
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 60 FKADLLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAK- 118
+KADL D S AI GC GVFH+A P + +P+ E+++P ++G L ++K+C AK
Sbjct: 61 WKADLADEGSFDEAIKGCTGVFHVATPMDFES-KDPENEVIKPTIEGMLGIMKSCAAAKT 119
Query: 119 VKRVIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRT--TNNW-YCLSKTEAESEALEF 175
V+R++ SS V + + + DE+CWSD E+CR W Y +SKT AE A ++
Sbjct: 120 VRRLVFTSSAGTVNIQEH--QLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKY 177
Query: 176 GKKTGLDVVTICPNLVLGPLLQSKVNTSSLVLIKLLKEGYESLENKLR--MIVDVRDVXX 233
K+ +D +TI P LV+GP + S + S + + + G E+ + +R V + D+
Sbjct: 178 AKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPIT-GNEAHYSIIRQGQFVHLDDLCN 236
Query: 234 XXXXXXXXXXXXGRYICTAHMIRARDLVDKLKSLYPNYNYPKSF---TEKEDEVMLTSEK 290
GRYIC++H DL L+ YP YN P F E V +S+K
Sbjct: 237 AHIYLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKK 296
Query: 291 LQKLGWSYR-SLEETLVDSVESYKKVGIL 318
L LG+ ++ SLE+ +V++ + G+L
Sbjct: 297 LTDLGFEFKYSLEDMFTGAVDTCRAKGLL 325
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 184/332 (55%), Gaps = 20/332 (6%)
Query: 5 KERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKN-ARLYELEKASENLKLFKAD 63
K+ CV G GF+AS +VKLLL + Y V+ T R+P ++K + L EL++ + LK+F+AD
Sbjct: 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD-LKIFRAD 67
Query: 64 LLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAK-VKRV 122
L D S ++ I GC+ VFH+A P + +P+ ++++PA++G +NV+KAC AK VKRV
Sbjct: 68 LTDELSFEAPIAGCDFVFHVATPVHFAS-EDPENDMIKPAIQGVVNVMKACTRAKSVKRV 126
Query: 123 IVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTN--NW-YCLSKTEAESEALEFGKKT 179
I+ SS AV +N G ++DE W+D E+ + W Y SKT AE A +F ++
Sbjct: 127 ILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEEN 186
Query: 180 GLDVVTICPNLVLGPLLQSKVNTSSLVLIKLLKEGYESLENKLR---------MIVDVRD 230
+D++T+ P L+ G L S V SS+ L L G E L N ++ I V D
Sbjct: 187 NIDLITVIPTLMAGSSLTSDV-PSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVED 245
Query: 231 VXXXXXXXXXXXXXXGRYICTAHMIRARDLVDKLKSLYPNYNYPKSFTE--KEDEVMLTS 288
V GRYIC A +L L YP Y P F + + +++++S
Sbjct: 246 VCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPKSKLIISS 305
Query: 289 EKLQKLGWSYR-SLEETLVDSVESYKKVGILN 319
EKL K G+S++ +EE +SVE +K G+L
Sbjct: 306 EKLVKEGFSFKYGIEEIYDESVEYFKAKGLLQ 337
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 110/325 (33%), Positives = 163/325 (50%), Gaps = 14/325 (4%)
Query: 5 KERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKN--ARLYELEKASENLKLFKA 62
K RVCVTG GFL SW++K LL Y V+ T R + K + L L ASE L F A
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNA 60
Query: 63 DLLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAK-VKR 121
DL + DS +AI GC G+FH A P V P+ + + V G L ++KAC+ +K VKR
Sbjct: 61 DLSNPDSFAAAIEGCVGIFHTASPI-DFAVSEPEEIVTKRTVDGALGILKACVNSKTVKR 119
Query: 122 VIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTN--NW-YCLSKTEAESEALEFGKK 178
I SSG AV N + ++DE+ WSD + R+ W Y +SKT AE LEFG++
Sbjct: 120 FIYTSSGSAVSFNGK--DKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQ 177
Query: 179 TGLDVVTICPNLVLGPLLQSKVNTSSLVLIKLLKEGYESLENKLRMIVDVRDVXXXXXXX 238
G+DVVT+ ++G + K+ S + L+ E + +V V DV
Sbjct: 178 NGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYL 237
Query: 239 XXXXXXXGRYICTAHMIRARDLVDKLKSLYPNYNYPKSFTEKEDEVM----LTSEKLQKL 294
GRY C+ ++ ++ L + YP Y KE + L ++KL
Sbjct: 238 LENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDA 297
Query: 295 GWSYR-SLEETLVDSVESYKKVGIL 318
G+ ++ ++E+ D+++ K+ G L
Sbjct: 298 GFDFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 141/335 (42%), Gaps = 32/335 (9%)
Query: 4 EKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKN-ARLYELEKASENLKLFKA 62
E V VTGA GF+AS VV+ LL Y V GTAR S N + ++ +
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE 69
Query: 63 DLLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACLEA-KVKR 121
D+L + I G GV HIA + N E++ PA+ GTLN ++A VKR
Sbjct: 70 DMLKQGAYDEVIKGAAGVAHIAS---VVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKR 126
Query: 122 VIVVSSGVAVGLNPRWPKGQIMDETCWS----DKEYCRTTNN-----W-YCLSKTEAESE 171
++ SS V+ + +G +DE W+ DK ++ W Y SKTEAE
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELA 186
Query: 172 ALEF--GKKTGLDVVTICPNLVLGPLLQSKVNTSSLV-LIKLLKEGYESLENKL---RMI 225
A +F K + + PN +G + + + S + L G S L +
Sbjct: 187 AWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYY 246
Query: 226 VDVRDVXXXXXXXXXXXXXXGRYI-CTAHMIRARDLVDKLKSLYPNYNYPKSFTEKEDEV 284
V D+ R + TA ++ + LYP+ +P F ++ ++
Sbjct: 247 VSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDL 306
Query: 285 --MLTSEKLQKL------GWSYRSLEETLVDSVES 311
T+ L+ L GW RS+EE++ D V S
Sbjct: 307 SKFDTAPSLEILKSLGRPGW--RSIEESIKDLVGS 339
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 139/335 (41%), Gaps = 32/335 (9%)
Query: 4 EKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKN-ARLYELEKASENLKLFKA 62
E V VTGA GF+AS VV+ LL Y V GTAR S N + ++ +
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE 69
Query: 63 DLLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACLEA-KVKR 121
D L + I G GV HIA + N E++ PA+ GTLN ++A VKR
Sbjct: 70 DXLKQGAYDEVIKGAAGVAHIAS---VVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKR 126
Query: 122 VIVVSSGVAVGLNPRWPKGQIMDETCWS----DKEYCRTTNN-----W-YCLSKTEAESE 171
++ SS V+ + +G +DE W+ DK ++ W Y SKTEAE
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELA 186
Query: 172 ALEFG--KKTGLDVVTICPNLVLGPLLQSKVN-TSSLVLIKLLKEGYESLENKL---RMI 225
A +F K + + PN +G + + S+ L G S L +
Sbjct: 187 AWKFXDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWXXSLFNGEVSPALALXPPQYY 246
Query: 226 VDVRDVXXXXXXXXXXXXXXGRYI-CTAHMIRARDLVDKLKSLYPNYNYPKSFTEKEDEV 284
V D+ R + TA ++ + LYP+ +P F ++ ++
Sbjct: 247 VSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDL 306
Query: 285 --MLTSEKLQKL------GWSYRSLEETLVDSVES 311
T+ L+ L GW RS+EE++ D V S
Sbjct: 307 SKFDTAPSLEILKSLGRPGW--RSIEESIKDLVGS 339
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 12/207 (5%)
Query: 62 ADLLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKR 121
A++LD+ ++ A+ G +GV A PS P E + A+ T ACL+A+V R
Sbjct: 63 AEMLDHAGLERALRGLDGVIFSAGYYPSR--PRRWQEEVASALGQTNPFYAACLQARVPR 120
Query: 122 VIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNNWYCLSKTEAESEALEFGKKTGL 181
++ V S A+ PR P+G E + D + + Y L K + +A E + GL
Sbjct: 121 ILYVGSAYAM---PRHPQGLPGHEGLFYDS--LPSGKSSYVLCKWALDEQAREQ-ARNGL 174
Query: 182 DVVTICPNLVLGPLLQSKVNTSSLVLIKLLKEG-YESLENKLRMIVDVRDVXXXXXXXXX 240
VV P +VLG L + ++ +I + G R ++D +
Sbjct: 175 PVVIGIPGMVLGEL---DIGPTTGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALE 231
Query: 241 XXXXXGRYICTAHMIRARDLVDKLKSL 267
RY+ T H + DL ++ L
Sbjct: 232 RGRIGERYLLTGHNLEMADLTRRIAEL 258
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 23/180 (12%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
R+ VTGA G + S + L + + V + + + +L A + ++ DL D
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEV----------RLSDIVDLGAAEAHEEIVACDLAD 53
Query: 67 YDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRVIVVS 126
+V + C+G+ H+ +V P ++L+ + G N+ +A R++ S
Sbjct: 54 AQAVHDLVKDCDGIIHLG----GVSVERPWNDILQANIIGAYNLYEAARNLGKPRIVFAS 109
Query: 127 SGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNNWYCLSKTEAESEALEFGKKTGLDVVTI 186
S +G PR T D E R ++ Y LSK E A + K ++ + I
Sbjct: 110 SNHTIGYYPR---------TTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNI 160
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 28/195 (14%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDE-----------KNARLYELEKASE 55
R+ VTG GF+ S V+ LL+ Y P+DE A L ++ A
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAY-----PDVPADEVIVLDSLTYAGNRANLAPVD-ADP 55
Query: 56 NLKLFKADLLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACL 115
L+ D+ D + + G + + H A + E V+GT +++ +
Sbjct: 56 RLRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAV 115
Query: 116 EAKVKRVIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNNWYCLSKTEAESEALEF 175
+A V RV+ VS+ G +D W++ N+ Y SK ++ A +
Sbjct: 116 DAGVGRVVHVSTNQVYG---------SIDSGSWTESSPLE-PNSPYAASKAGSDLVARAY 165
Query: 176 GKKTGLDV-VTICPN 189
+ GLDV +T C N
Sbjct: 166 HRTYGLDVRITRCCN 180
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 136/330 (41%), Gaps = 45/330 (13%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
R +TG GF+ ++ L ++ V GT+R A+L N+++ D++D
Sbjct: 14 RALITGVAGFVGKYLANHLTEQNVEVFGTSR----NNEAKL-------PNVEMISLDIMD 62
Query: 67 YDSVKSAI--VGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVK-RVI 123
VK I + + +FH+A + + V GTL+V+ A ++ + R++
Sbjct: 63 SQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRIL 122
Query: 124 VVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNNWYCLSKTEAESEALEFGKKTGLDV 183
+ S G+ I+ E +E + Y +SK A ++ K G+D+
Sbjct: 123 TIGSSEEYGM--------ILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDI 174
Query: 184 V------TICPNLVLGPLLQSKVNTSSLVLIKLLKE----GYESLENKLRMIVDVRDVXX 233
+ I P LG + Q +V I++ K+ +LE +R DVRD+
Sbjct: 175 IHTRTFNHIGPGQSLGFVTQD--FAKQIVDIEMEKQEPIIKVGNLE-AVRDFTDVRDIVQ 231
Query: 234 XXXXXXXXXXXXGRY-ICTAHMIRARDLVDKLKSLYPNYNY-----PKSFTEKEDEVMLT 287
Y +C+ R +D++D L ++ N P E ++
Sbjct: 232 AYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAM-ANVKIDTELNPLQLRPSEVPTLIG 290
Query: 288 SEKLQK--LGWSYR-SLEETLVDSVESYKK 314
S K K GW R LE++L + ++SY++
Sbjct: 291 SNKRLKDSTGWKPRIPLEKSLFEILQSYRQ 320
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 28/195 (14%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDE-----------KNARLYELEKASE 55
R+ VTG GF+ S V+ LL+ Y P+DE A L ++ A
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAY-----PDVPADEVIVLDSLTYAGNRANLAPVD-ADP 55
Query: 56 NLKLFKADLLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACL 115
L+ D+ D + + G + + H A + E V+GT +++ +
Sbjct: 56 RLRFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAV 115
Query: 116 EAKVKRVIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNNWYCLSKTEAESEALEF 175
+A V RV+ VS+ G +D W++ N+ Y SK ++ A +
Sbjct: 116 DAGVGRVVHVSTDEVYG---------SIDSGSWTESSPLE-PNSPYAASKAGSDLVARAY 165
Query: 176 GKKTGLDV-VTICPN 189
+ GLDV +T C N
Sbjct: 166 HRTYGLDVRITRCCN 180
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 4/134 (2%)
Query: 10 VTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKN----ARLYELEKASENLKLFKADLL 65
+TG GF+ S +++ LL D V G + + R EK N K + D+
Sbjct: 32 ITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIR 91
Query: 66 DYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRVIVV 125
+ D +A G + V H A N + + G LN++ A +AKV+
Sbjct: 92 NLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYA 151
Query: 126 SSGVAVGLNPRWPK 139
+S G +P PK
Sbjct: 152 ASSSTYGDHPGLPK 165
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
RV VTG GF+ S +V+ LL+R E + N + E + + F+ DL D
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGL-------EVAVLDNLATGKRENVPKGVPFFRVDLRD 54
Query: 67 YDSVKSAI--VGCNGVFHIACPAP-STTVPNPQMELLEPAVKGTLNVVKACLEAKVKRVI 123
+ V+ A V H A A +V +P ++ E + G LN+++AC + V++++
Sbjct: 55 KEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLD-FEVNLLGGLNLLEACRQYGVEKLV 113
Query: 124 VVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNNWYCLSKTEAESEALEFGKKTGLDV 183
S+G A+ P+G+ +ET W + + Y SK E +G+ GL
Sbjct: 114 FASTGGAI--YGEVPEGERAEET-WPPR-----PKSPYAASKAAFEHYLSVYGQSYGLKW 165
Query: 184 VTICPNLVLGP 194
V++ V GP
Sbjct: 166 VSLRYGNVYGP 176
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 8 VCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLDY 67
+ VTG GF+ S VV L + V +E E +E +L KADL
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNE--------EFVNEAARLVKADLA-A 54
Query: 68 DSVKSAIVGCNGVFHIAC-PAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRVIVVS 126
D +K + G V+HIA P NP E+ V T +++A +A V R++ S
Sbjct: 55 DDIKDYLKGAEEVWHIAANPDVRIGAENPD-EIYRNNVLATYRLLEAMRKAGVSRIVFTS 113
Query: 127 SGVAVG 132
+ G
Sbjct: 114 TSTVYG 119
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 130/323 (40%), Gaps = 35/323 (10%)
Query: 6 ERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLL 65
++V +TG G + S + +LLL R V G + + E K NL + +
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRR-----EHLKDHPNLTFVEGSIA 76
Query: 66 DYDSVKSAI--VGCNGVFHIACPAPSTTVPNP-QMELLEPAVKGTLNVVKACLEAKVKRV 122
D+ V I + + V H A S P+ + L V G+ NVV+A + V R
Sbjct: 77 DHALVNQLIGDLQPDAVVHTAA---SYKDPDDWYNDTLTNCVGGS-NVVQAAKKNNVGRF 132
Query: 123 IVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNNWYCLSKTEAESEALEFGKKTGLD 182
+ + + G+ P + + D N+ Y +SK+ A + LE+ +GLD
Sbjct: 133 VYFQTALCYGVKP-------IQQPVRLDHPR-NPANSSYAISKS-ANEDYLEY---SGLD 180
Query: 183 VVTICPNLVLGPLLQSKVNTSSLVLIKLLKEGYESLENKLRM-IVDVRDVXXXXXXXXXX 241
VT V+GP V+ + + L EG + K R V V+D+
Sbjct: 181 FVTFRLANVVGP---RNVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARATVRAVDG 237
Query: 242 XXXXGRYICTAHMIRARDLVDKL--KSLYPNYNYPKSFTEKEDE----VMLTSEKLQKLG 295
+ + + ++L D + P+Y P+ D+ ++ S +Q G
Sbjct: 238 VGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDFG 297
Query: 296 -WSYRSLEETLVDSVESYKKVGI 317
+ L+ET+ +V +++ G+
Sbjct: 298 KIEFTPLKETVAAAVAYFREYGV 320
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 84/225 (37%), Gaps = 44/225 (19%)
Query: 8 VCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLDY 67
+ VTG+ G + VV L ++ V G ++L + + L D
Sbjct: 22 ILVTGSAGRVGRAVVAALRTQGRTVRG-------------FDLRPSGTGGEEVVGSLEDG 68
Query: 68 DSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRVIVVSS 127
++ AI+G + V H+ A + P + + V+GT ++ A A V+R + SS
Sbjct: 69 QALSDAIMGVSAVLHLG--AFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126
Query: 128 GVAVGLNPRWPKGQIMDETCWSDKEYCRTTNNWYCLSKTEAESEALEFGKKTGL------ 181
G +P+ + D C N+ Y L+K E E + F +++G
Sbjct: 127 GEV------YPENRPEFLPVTEDHPLC--PNSPYGLTKLLGE-ELVRFHQRSGAMETVIL 177
Query: 182 --------------DVVTICPNLVLGPLLQSKVNTSSLVLIKLLK 212
D P L P + + N + + +LL+
Sbjct: 178 RFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQ 222
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 3 LEKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKA 62
+ +R +TG G +++ KLLL + Y V+G R + + RL EL ++K+
Sbjct: 1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKEL-GIENDVKIIHM 59
Query: 63 DLLDYDSVKSAI--VGCNGVFHIAC 85
DLL++ ++ I V + V+++A
Sbjct: 60 DLLEFSNIIRTIEKVQPDEVYNLAA 84
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 1 MALEKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLF 60
M +++R+ +TG GF+ S + L+ + V T + R E EN
Sbjct: 1 MEKDRKRILITGGAGFVGSHLTDKLMMDGHEV--TVVDNFFTGRKRNVEHWIGHENF--- 55
Query: 61 KADLLDYDSVKSAIVGCNGVFHIACPA-PSTTVPNPQMELLEPAVKGTLNVVKACLEAKV 119
+L+++D V+ + + ++H+A PA P + NP ++ L+ GTLN++
Sbjct: 56 --ELINHDVVEPLYIEVDQIYHLASPASPPNYMYNP-IKTLKTNTIGTLNMLGLAKRVGA 112
Query: 120 KRVIVVSSGV 129
+ ++ +S V
Sbjct: 113 RLLLASTSEV 122
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 15/169 (8%)
Query: 3 LEKERVCVTGAGGFLASWVVKLLL----SRDYFVHGTAREPSDEKNARLYELEKASENLK 58
L+ + + +TG G V+ +L ++ V+ DE +E ++
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYS-----RDELKQSEMAMEFNDPRMR 73
Query: 59 LFKADLLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAK 118
F D+ D + + A+ G + H A +E ++ + G NV+ ACL+
Sbjct: 74 FFIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNA 133
Query: 119 VKRVIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNNWYCLSKTE 167
+ +VI +S+ A NP G + C SDK + + NN+ S+T+
Sbjct: 134 ISQVIALSTDKAA--NPINLYGAT--KLC-SDKLFV-SANNFKGSSQTQ 176
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 7 RVCVTGAGGFLASWVVKLLLSR--DYFVHGTAREPSDEKNARLYELEKASENLKLFKADL 64
++ VTG GF+ S ++ +L + D+ V + A L +LE K D+
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLED-DPRYTFVKGDV 63
Query: 65 LDYDSVKSAIVGCNGVFHIACPAP-STTVPNPQMELLEPAVKGTLNVVKAC 114
DY+ VK + +GV H+A + ++ +P++ L V GT ++++
Sbjct: 64 ADYELVKELVRKVDGVVHLAAESHVDRSISSPEI-FLHSNVIGTYTLLESI 113
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 6 ERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLL 65
+++ + GA GF+ S ++ L+R + V R P +++ +E+LK+ KAD+
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE--------KIKIENEHLKVKKADVS 56
Query: 66 DYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRVIVV 125
D V G + V P + NP ++ + +K L ++ +A V R + V
Sbjct: 57 SLDEVCEVCKGADAVISAFNPGWN----NP--DIYDETIKVYLTIIDGVKKAGVNRFLXV 110
Query: 126 SSGVAVGLNP 135
++ + P
Sbjct: 111 GGAGSLFIAP 120
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 10 VTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASE-----NLKLFKADL 64
+TG G S++ + LL + Y VHG R S R+ L K + N+KL DL
Sbjct: 29 ITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDL 88
Query: 65 LD 66
D
Sbjct: 89 TD 90
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 4 EKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKAD 63
+ +RV VTG GF SW+ L V G A + + L+E+ + ++ ++ D
Sbjct: 8 QGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPS--LFEIVRLNDLMESHIGD 65
Query: 64 LLDYDSVKSAIVGCNG--VFHIAC-PAPSTTVPNPQMELLEPAVKGTLNVVKACLE-AKV 119
+ D++ ++S+I VFH+A P + P ++ V GT+++++ + +
Sbjct: 66 IRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQP-IKTYSTNVMGTVHLLETVKQVGNI 124
Query: 120 KRVIVVSS 127
K V+ ++S
Sbjct: 125 KAVVNITS 132
>pdb|3E9N|A Chain A, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|B Chain B, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|C Chain C, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|D Chain D, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|E Chain E, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|F Chain F, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|G Chain G, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
pdb|3E9N|H Chain H, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE FROM CORYNEBACTERIUM GLUTAMICUM
Length = 245
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 34/238 (14%)
Query: 1 MALEKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLF 60
M+L+K+ VTGA G + +VK LSRD+ V+ R P E A L E+ E ++
Sbjct: 1 MSLKKKIAVVTGATGGMGIEIVK-DLSRDHIVYALGRNP--EHLAALAEI----EGVEPI 53
Query: 61 KADLL-------DYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNV-VK 112
++D++ D +K+ + + + H A A TT+ + E LNV V
Sbjct: 54 ESDIVKEVLEEGGVDKLKN-LDHVDTLVHAAAVARDTTI--EAGSVAEWHAHLDLNVIVP 110
Query: 113 ACLEAKVKRVIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNNWYCLSKTEAESEA 172
A L ++ + +SG + +N G N Y SK A
Sbjct: 111 AELSRQLLPALRAASGCVIYINSGAGNGP-------------HPGNTIYAASKHALRGLA 157
Query: 173 LEFGKK---TGLDVVTICPNLVLGPLLQSKVNTSSLVLIKLLKEGYESLENKLRMIVD 227
F K+ G+ V T+ P P+LQ +++ + + + N +R ++D
Sbjct: 158 DAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDSQGTNFRPEIYIEPKEIANAIRFVID 215
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 13/171 (7%)
Query: 10 VTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASEN-----LKLFKADL 64
+TG G S++ + LL + Y VHG R S+ R+ + N +KL ADL
Sbjct: 33 ITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADL 92
Query: 65 LDYDSVKSAI--VGCNGVFHIACP---APSTTVPNPQMELLEPAVKGTLNVVKACLEAKV 119
D S++ I + + V+++A A S +P+ +++ L V++
Sbjct: 93 TDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSG 152
Query: 120 KRVIVVSSGVA--VGLNPRWPKGQIMDETCWSDKEYCRTTNNWYCLSKTEA 168
+ V +G + G P P+ + S + +WY ++ EA
Sbjct: 153 RTVKYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAASKCAAHWYTVNYREA 202
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 7 RVCVTGAGGFLASWVVKLLLSR--DYFVHGTAREPSDEKNARLYELEKASENLKLFKADL 64
++ +TG GFL S + LS+ D V N L+ L N + D+
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDN--LHWLSSLG-NFEFVHGDI 59
Query: 65 LDYDSVKSAIVGC--NGVFHIACP-APSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKR 121
+ + V I + FH+A A +T++ NP M+ E V GTLN+++A +
Sbjct: 60 RNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDF-EINVGGTLNLLEAVRQYNSNC 118
Query: 122 VIVVSS 127
I+ SS
Sbjct: 119 NIIYSS 124
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 4 EKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKAD 63
+++R+ +TG GF+ S + L + V T + R E EN +
Sbjct: 26 DRKRILITGGAGFVGSHLTDKLXXDGHEV--TVVDNFFTGRKRNVEHWIGHENF-----E 78
Query: 64 LLDYDSVKSAIVGCNGVFHIACPA-PSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRV 122
L+++D V+ + + ++H+A PA P NP ++ L+ GTLN + + +
Sbjct: 79 LINHDVVEPLYIEVDQIYHLASPASPPNYXYNP-IKTLKTNTIGTLNXLGLAKRVGARLL 137
Query: 123 IVVSSGV 129
+ +S V
Sbjct: 138 LASTSEV 144
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 10 VTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLDYDS 69
VTG G +++ KLLL + Y VHG S + RL EL +++ D+ D S
Sbjct: 19 VTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL-GIEGDIQYEDGDMADACS 77
Query: 70 VKSAIV 75
V+ A++
Sbjct: 78 VQRAVI 83
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
RV VTG G++ S LL + V + K + L +E+ F +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 67 YDSVKSAIV---GCNGVFHIA-CPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRV 122
+++ + I+ + V H A A +V P +E + V GTL ++ A A VK
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 123 IVVSSGVAVGLNPRWP 138
I SS G NP+ P
Sbjct: 120 IFSSSATVYGDNPKIP 135
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
RV VTG G++ S LL + V + K + L +E+ F +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 67 YDSVKSAIV---GCNGVFHIA-CPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRV 122
+++ + I+ + V H A A +V P +E + V GTL ++ A A VK
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 123 IVVSSGVAVGLNPRWP 138
I SS G NP+ P
Sbjct: 120 IFSSSATVYGDNPKIP 135
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 72/266 (27%)
Query: 2 ALEKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLF- 60
A + RV + G GF+ + + + LL D++ +Y L+ S+ + F
Sbjct: 10 ARRRTRVLILGVNGFIGNHLTERLLREDHY--------------EVYGLDIGSDAISRFL 55
Query: 61 --------KADL-LDYDSVKSAIVGCNGVFH-IACPAPSTTVPNPQMELLEPAVKGTLNV 110
+ D+ + + ++ + C+ V +A P NP + + E + L +
Sbjct: 56 NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNP-LRVFELDFEENLRI 114
Query: 111 VKACLEAKVKRVIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNN----------W 160
++ C++ + KR+I S+ G+ C SDK + +N W
Sbjct: 115 IRYCVKYR-KRIIFPSTAEVYGM-------------C-SDKYFDEDHSNLIVGPVNKPRW 159
Query: 161 -YCLSKTEAESEALEFGKKTGLDVVTICPNLVLGPLLQ----SKVNTS----SLVL---- 207
Y +SK + +G+K GL P +GP L +++ +S L+L
Sbjct: 160 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVE 219
Query: 208 ---IKLLKEGYESLENKLRMIVDVRD 230
IKL+ G + R D+RD
Sbjct: 220 GSPIKLIDGGKQK-----RCFTDIRD 240
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 72/266 (27%)
Query: 2 ALEKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLF- 60
A + RV + G GF+ + + + LL D++ +Y L+ S+ + F
Sbjct: 10 ARRRTRVLILGVNGFIGNHLTERLLREDHY--------------EVYGLDIGSDAISRFL 55
Query: 61 --------KADL-LDYDSVKSAIVGCNGVFH-IACPAPSTTVPNPQMELLEPAVKGTLNV 110
+ D+ + + ++ + C+ V +A P NP + + E + L +
Sbjct: 56 NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNP-LRVFELDFEENLRI 114
Query: 111 VKACLEAKVKRVIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNN----------W 160
++ C++ + KR+I S+ G+ C SDK + +N W
Sbjct: 115 IRYCVKYR-KRIIFPSTSEVYGM-------------C-SDKYFDEDHSNLIVGPVNKPRW 159
Query: 161 -YCLSKTEAESEALEFGKKTGLDVVTICPNLVLGPLLQ----SKVNTS----SLVL---- 207
Y +SK + +G+K GL P +GP L +++ +S L+L
Sbjct: 160 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVE 219
Query: 208 ---IKLLKEGYESLENKLRMIVDVRD 230
IKL+ G + R D+RD
Sbjct: 220 GSPIKLIDGGKQK-----RCFTDIRD 240
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 72/266 (27%)
Query: 2 ALEKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLF- 60
A + RV + G GF+ + + + LL D++ +Y L+ S+ + F
Sbjct: 10 ARRRTRVLILGVNGFIGNHLTERLLREDHY--------------EVYGLDIGSDAISRFL 55
Query: 61 --------KADL-LDYDSVKSAIVGCNGVFH-IACPAPSTTVPNPQMELLEPAVKGTLNV 110
+ D+ + + ++ + C+ V +A P NP + + E + L +
Sbjct: 56 NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNP-LRVFELDFEENLRI 114
Query: 111 VKACLEAKVKRVIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNN----------W 160
++ C++ + KR+I S+ G+ C SDK + +N W
Sbjct: 115 IRYCVKYR-KRIIFPSTSEVYGM-------------C-SDKYFDEDHSNLIVGPVNKPRW 159
Query: 161 -YCLSKTEAESEALEFGKKTGLDVVTICPNLVLGPLLQ----SKVNTS----SLVL---- 207
Y +SK + +G+K GL P +GP L +++ +S L+L
Sbjct: 160 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVE 219
Query: 208 ---IKLLKEGYESLENKLRMIVDVRD 230
IKL+ G + R D+RD
Sbjct: 220 GSPIKLIDGGKQK-----RCFTDIRD 240
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 72/266 (27%)
Query: 2 ALEKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLF- 60
A + RV + G GF+ + + + LL D++ +Y L+ S+ + F
Sbjct: 10 ARRRTRVLILGVNGFIGNHLTERLLREDHY--------------EVYGLDIGSDAISRFL 55
Query: 61 --------KADL-LDYDSVKSAIVGCNGVFH-IACPAPSTTVPNPQMELLEPAVKGTLNV 110
+ D+ + + ++ + C+ V +A P NP + + E + L +
Sbjct: 56 NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNP-LRVFELDFEENLRI 114
Query: 111 VKACLEAKVKRVIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNN----------W 160
++ C++ + KR+I S+ G+ C SDK + +N W
Sbjct: 115 IRYCVKYR-KRIIFPSTSEVYGM-------------C-SDKYFDEDHSNLIVGPVNKPRW 159
Query: 161 -YCLSKTEAESEALEFGKKTGLDVVTICPNLVLGPLLQ----SKVNTS----SLVL---- 207
Y +SK + +G+K GL P +GP L +++ +S L+L
Sbjct: 160 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVE 219
Query: 208 ---IKLLKEGYESLENKLRMIVDVRD 230
IKL+ G + R D+RD
Sbjct: 220 GSPIKLIDGGKQK-----RCFTDIRD 240
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 72/266 (27%)
Query: 2 ALEKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLF- 60
A + RV + G GF+ + + + LL D++ +Y L+ S+ + F
Sbjct: 10 ARRRTRVLILGVNGFIGNHLTERLLREDHY--------------EVYGLDIGSDAISRFL 55
Query: 61 --------KADL-LDYDSVKSAIVGCNGVFH-IACPAPSTTVPNPQMELLEPAVKGTLNV 110
+ D+ + + ++ + C+ V +A P NP + + E + L +
Sbjct: 56 NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNP-LRVFELDFEENLRI 114
Query: 111 VKACLEAKVKRVIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNN----------W 160
++ C++ + KR+I S+ G+ C SDK + +N W
Sbjct: 115 IRYCVKYR-KRIIFPSTSEVYGM-------------C-SDKYFDEDHSNLIVGPVNKPRW 159
Query: 161 -YCLSKTEAESEALEFGKKTGLDVVTICPNLVLGPLLQ----SKVNTS----SLVL---- 207
Y +SK + +G+K GL P +GP L +++ +S L+L
Sbjct: 160 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVE 219
Query: 208 ---IKLLKEGYESLENKLRMIVDVRD 230
IKL+ G + R D+RD
Sbjct: 220 GSPIKLIDGGKQK-----RCFTDIRD 240
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 25/134 (18%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
R+ VTG GF+ S +V L+ Y V S + E + + +L DL D
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRR-------EFVNPSAELHVRDLKD 54
Query: 67 YDSVKSAIVGCNGVFHIACPAPSTTVPNPQMEL--LEPAVK------GTLNVVKACLEAK 118
Y S + I G + VFH A NP++ L EP V T NV++ +
Sbjct: 55 Y-SWGAGIKG-DVVFHFAA--------NPEVRLSTTEPIVHFNENVVATFNVLEWARQTG 104
Query: 119 VKRVIVVSSGVAVG 132
V+ V+ SS G
Sbjct: 105 VRTVVFASSSTVYG 118
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
RV VTG G++ S LL + V + K + L +E+ F +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 67 YDSVKSAIV---GCNGVFHIA-CPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRV 122
+++ + I+ + V H A A +V P +E + V GTL ++ A A VK
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 123 IVVSSGVAVGLNPRWP 138
I S+ G NP+ P
Sbjct: 120 IFSSTATVYGDNPKIP 135
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
RV VTG G++ S LL + V + K + L +E+ F +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 67 YDSVKSAIV---GCNGVFHIA-CPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRV 122
+++ + I+ + V H A A +V P +E + V GTL ++ A A VK
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 123 IVVSSGVAVGLNPRWP 138
I S+ G NP+ P
Sbjct: 120 IFSSAATVYGDNPKIP 135
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
RV VTG G++ S LL + V + K + L +E+ F +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 67 YDSVKSAIV---GCNGVFHIA-CPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRV 122
+++ + I+ + V H A A +V P +E + V GTL ++ A A VK
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 123 IVVSSGVAVGLNPRWP 138
I S+ G NP+ P
Sbjct: 120 IFSSAATVYGDNPKIP 135
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 102/261 (39%), Gaps = 72/261 (27%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLF------ 60
RV + G GF+ + + + LL D++ +Y L+ S+ + F
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHY--------------EVYGLDIGSDAISRFLNHPHF 47
Query: 61 ---KADL-LDYDSVKSAIVGCNGVFH-IACPAPSTTVPNPQMELLEPAVKGTLNVVKACL 115
+ D+ + + ++ + C+ V +A P NP + + E + L +++ C+
Sbjct: 48 HFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNP-LRVFELDFEENLRIIRYCV 106
Query: 116 EAKVKRVIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNN----------W-YCLS 164
+ + KR+I S+ G+ C SDK + +N W Y +S
Sbjct: 107 KYR-KRIIFPSTSEVYGM-------------C-SDKYFDEDHSNLIVGPVNKPRWIYSVS 151
Query: 165 KTEAESEALEFGKKTGLDVVTICPNLVLGPLLQ----SKVNTS----SLVL-------IK 209
K + +G+K GL P +GP L +++ +S L+L IK
Sbjct: 152 KQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIK 211
Query: 210 LLKEGYESLENKLRMIVDVRD 230
L+ G + R D+RD
Sbjct: 212 LIDGGKQK-----RCFTDIRD 227
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 104/266 (39%), Gaps = 72/266 (27%)
Query: 2 ALEKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLF- 60
A + RV + G GF+ + + + LL D++ +Y L+ S+ + F
Sbjct: 312 ARRRTRVLILGVNGFIGNHLTERLLREDHY--------------EVYGLDIGSDAISRFL 357
Query: 61 --------KADL-LDYDSVKSAIVGCNGVFH-IACPAPSTTVPNPQMELLEPAVKGTLNV 110
+ D+ + + ++ + C+ V +A P NP + + E + L +
Sbjct: 358 NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNP-LRVFELDFEENLRI 416
Query: 111 VKACLEAKVKRVIVVSSGVAVGLNPRWPKGQIMDETCWSDKEYCRTTNN----------W 160
++ C++ + KR+I S+ G+ C SDK + +N W
Sbjct: 417 IRYCVKYR-KRIIFPSTSEVYGM-------------C-SDKYFDEDHSNLIVGPVNKPRW 461
Query: 161 -YCLSKTEAESEALEFGKKTGLDVVTICPNLVLGPLLQ----SKVNTS----SLVL---- 207
Y +SK + +G+K GL P +GP L +++ +S L+L
Sbjct: 462 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVE 521
Query: 208 ---IKLLKEGYESLENKLRMIVDVRD 230
IKL+ G + R D+RD
Sbjct: 522 GSPIKLIDGGKQK-----RCFTDIRD 542
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 8 VCVTGAGGFLASWVVK--LLLSRDYFVHGTAREPSDEKNAR--------LYELEKASENL 57
+C + W + + + V G ARE +E NAR +Y L S+
Sbjct: 55 LCKRAIAPYRGKWTLPAGFXENNETLVQGAARETLEEANARVEIRELYAVYSLPHISQVY 114
Query: 58 KLFKADLLDYD 68
LF+A LLD D
Sbjct: 115 XLFRAKLLDLD 125
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 8 VCVTGAGGFLASWVVKLLLSRDY--FVHGTAREPSDEKNARLYELEKASENLKLFKADLL 65
V VTG G++ S V L+ Y V + + ARL L K ++ ++ DL
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTK--HHIPFYEVDLC 71
Query: 66 DYDSVKSAI--VGCNGVFHIA---CPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVK 120
D ++ + V H A ST +P + + GT+ +++ + V
Sbjct: 72 DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIP---LRYYHNNILGTVVLLELMQQYNVS 128
Query: 121 RVIVVSSGVAVGLNPRWPKGQIMDETC 147
+ + SS G R+P + E C
Sbjct: 129 KFVFSSSATVYGDATRFPNMIPIPEEC 155
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
RV VTG G++ S LL + V + K + L +E+ F +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 67 YDSVKSAIV---GCNGVFHIA-CPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRV 122
+++ + I+ + V H A A +V P +E + V GTL ++ A A VK
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 123 IVVSSGVAVGLNPRWP 138
I S G NP+ P
Sbjct: 120 IFSSVATVYGDNPKIP 135
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
RV VTG G++ S LL + V + K + L +E+ F +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 67 YDSVKSAIV---GCNGVFHIA-CPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRV 122
+++ + I+ + V H A A +V P +E + V GTL ++ A A VK
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 123 IVVSSGVAVGLNPRWP 138
I SS G P+ P
Sbjct: 120 IFSSSATVYGDQPKIP 135
>pdb|3BPD|A Chain A, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|B Chain B, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|C Chain C, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|D Chain D, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|E Chain E, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|F Chain F, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|G Chain G, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|H Chain H, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|I Chain I, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|J Chain J, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|K Chain K, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|L Chain L, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|M Chain M, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|N Chain N, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
Length = 100
Score = 30.8 bits (68), Expect = 0.97, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 38 EPSDEKNARLYELEKASENLKL-FKADLLDYDSVKSAIVGCNGVFH 82
E D N L E+++A+EN+K+ + LDY+ +K I GV H
Sbjct: 32 ENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDXGGVIH 77
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
RV VTG G++ S LL + V + K + L +E+ F +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 67 YDSVKSAIV---GCNGVFHIA-CPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRV 122
+++ + I+ + V H A A +V P +E + V GTL ++ A A VK
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 123 IVVSSGVAVGLNPRWP 138
I SS G P+ P
Sbjct: 120 IFSSSATVYGDQPKIP 135
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
RV VTG G++ S LL + V + K + L +E+ F +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 67 YDSVKSAIV---GCNGVFHIA-CPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRV 122
+++ + I+ + V H A A +V P +E + V GTL ++ A A VK
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 123 IVVSSGVAVGLNPRWP 138
I S+ G P+ P
Sbjct: 120 IFSSAATVYGDQPKIP 135
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 6/136 (4%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
RV VTG G++ S LL + V + K + L +E+ F +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 67 YDSVKSAIV---GCNGVFHIA-CPAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRV 122
+++ + I+ + V H A A +V P +E + V GTL ++ A A VK
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKP-LEYYDNNVNGTLRLISAMRAANVKNF 119
Query: 123 IVVSSGVAVGLNPRWP 138
I S+ G P+ P
Sbjct: 120 IFSSAATVYGDQPKIP 135
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 4 EKERVCVTGAGGFLASWVVKLLLSRDYFV 32
E ++ +TGAGGF+AS + + L ++V
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound
In The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound
In The Active Site
Length = 379
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 4 EKERVCVTGAGGFLASWVVKLLLSRDYFV 32
E ++ +TGAGGF+AS + + L ++V
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 4 EKERVCVTGAGGFLASWVVKLLLSRDYFV 32
E ++ +TGAGGF+AS + + L ++V
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site
Length = 379
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 4 EKERVCVTGAGGFLASWVVKLLLSRDYFV 32
E ++ +TGAGGF+AS + + L ++V
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYV 56
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 7 RVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKADLLD 66
R+ VTG GF+ S +V L+ Y V D + +L DL D
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGG-----------SAELHVRDLKD 50
Query: 67 YDSVKSAIVGCNGVFHIAC-PAPSTTVPNPQMELLEPAVKGTLNVVKACLEAKVKRVIVV 125
Y S + I G + VFH A P + P + E V T NV++ + V+ V+
Sbjct: 51 Y-SWGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVV-ATFNVLEWARQTGVRTVVFA 107
Query: 126 SSGVAVG 132
SS G
Sbjct: 108 SSSTVYG 114
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 10 VTGAGGFLAS-------WVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKA 62
+TG GF+ S + ++++ D F G + K L E+ S +
Sbjct: 30 ITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKT--LVSTEQWSR-FCFIEG 86
Query: 63 DLLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELL---EPAVKGTLNVVKACLEAKV 119
D+ D + + + G + V H A +VP ++ + + G LN++ A A+V
Sbjct: 87 DIRDLTTCEQVMKGVDHVLHQAALG---SVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 120 KRVIVVSSGVAVGLNPRWPK 139
+ +S G +P PK
Sbjct: 144 QSFTYAASSSTYGDHPALPK 163
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 10 VTGAGGFLAS-------WVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKA 62
+TG GF+ S + ++++ D F G + K L E+ S +
Sbjct: 24 ITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKT--LVSTEQWSR-FCFIEG 80
Query: 63 DLLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELL---EPAVKGTLNVVKACLEAKV 119
D+ D + + + G + V H A +VP ++ + + G LN++ A A+V
Sbjct: 81 DIRDLTTCEQVMKGVDHVLHQAALG---SVPRSIVDPITTNATNITGFLNILHAAKNAQV 137
Query: 120 KRVIVVSSGVAVGLNPRWPK 139
+ +S G +P PK
Sbjct: 138 QSFTYAASSSTYGDHPALPK 157
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 10 VTGAGGFLAS-------WVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKA 62
+TG GF+ S + ++++ D F G + K L E+ S +
Sbjct: 30 ITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKT--LVSTEQWSR-FCFIEG 86
Query: 63 DLLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELL---EPAVKGTLNVVKACLEAKV 119
D+ D + + + G + V H A +VP ++ + + G LN++ A A+V
Sbjct: 87 DIRDLTTCEQVMKGVDHVLHQAALG---SVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 120 KRVIVVSSGVAVGLNPRWPK 139
+ +S G +P PK
Sbjct: 144 QSFTYAASSSTYGDHPALPK 163
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 149 SDKEYCRTTNNWYCLSKTEAESEALEFGKKTGLDVVTI 186
D + C+ N EA SEAL F K G D V +
Sbjct: 166 GDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRV 203
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 10 VTGAGGFLAS-------WVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKA 62
+TG GF+ S + ++++ D F G + K L E+ S +
Sbjct: 43 ITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKT--LVSTEQWSR-FCFIEG 99
Query: 63 DLLDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELL---EPAVKGTLNVVKACLEAKV 119
D+ D + + + G + V H A +VP ++ + + G LN++ A A+V
Sbjct: 100 DIRDLTTCEQVMKGVDHVLHQAALG---SVPRSIVDPITTNATNITGFLNILHAAKNAQV 156
Query: 120 KRVIVVSSGVAVGLNPRWPK 139
+ +S G +P PK
Sbjct: 157 QSFTYAASSSTYGDHPALPK 176
>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|C Chain C, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|D Chain D, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
Length = 459
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 141 QIMDETCWSDKEYCRTTNNWYCLSKTEAESEALEFGKKTGLDVVTICP--NLVLGPLLQS 198
+I+ ET DK+Y T Y +S S G + GL + I +V+ PL+
Sbjct: 236 EIIFETPTGDKDYAYQT--CYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLI-- 291
Query: 199 KVNTSSLVLIKLLKEGYESLENKLRMIVDVRDV 231
++++ KE YE L+ K R+ +D RD+
Sbjct: 292 -FKGKEDIVMEKAKEIYEKLKGKFRVHIDDRDI 323
>pdb|2DQW|A Chain A, Crystal Structure Of Dihydropteroate Synthase (Folp) From
Thermus Thermophilus Hb8
pdb|2DQW|B Chain B, Crystal Structure Of Dihydropteroate Synthase (Folp) From
Thermus Thermophilus Hb8
pdb|2DZA|A Chain A, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 4-Aminobenzoate
pdb|2DZA|B Chain B, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 4-Aminobenzoate
pdb|2DZB|A Chain A, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 6hmppp
pdb|2DZB|B Chain B, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 6hmppp
Length = 294
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 51 EKASENLKLFKADLLDYDSVKS----AIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKG 106
E A E LKL L D ++ A+ +GV + P VP+P + +
Sbjct: 114 EVAEEALKLGAHLLNDVTGLRDERMVALAARHGVAAVVMHMP---VPDPATMMAHARYRD 170
Query: 107 TLNVVKACLEAKVKRVIVVSSGVA-VGLNPRWPKGQIMDETC 147
+ VKA LEA+ +R + S+GV V L+P + G++++
Sbjct: 171 VVAEVKAFLEAQARRAL--SAGVPQVVLDPGFGFGKLLEHNL 210
>pdb|2VGN|A Chain A, Structure Of Yeast Dom34 : A Protein Related To
Translation Termination Factor Erf1 And Involved In
No-go Decay.
pdb|2VGN|B Chain B, Structure Of Yeast Dom34 : A Protein Related To
Translation Termination Factor Erf1 And Involved In
No-go Decay
Length = 386
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 65 LDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVK 112
++Y S +A+V G+ H+ S+T+ ++E P K T +V+K
Sbjct: 136 IEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSXPKKKRTTDVLK 183
>pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|B Chain B, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|C Chain C, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
pdb|3RIH|D Chain D, Crystal Structure Of A Putative Short Chain Dehydrogenase
Or Reductase From Mycobacterium Abscessus
Length = 293
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 15/140 (10%)
Query: 3 LEKERVCVTGAGGFLASWVVKLLLSRDYFVHGTAREPSDEKNARLYELEKASENLKLFKA 62
L V VTG + + + V AR P + + E + N+ +
Sbjct: 39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRL 98
Query: 63 DLLDYDSVKSA---IVGCNGVFHIACPAPS--------TTVPNPQMELLEPAVKGTLNVV 111
D+ D S A +V G + C T P E+L+ VKGT+ V
Sbjct: 99 DVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTV 158
Query: 112 KACL----EAKVKRVIVVSS 127
+ACL + RVI+ SS
Sbjct: 159 QACLAPLTASGRGRVILTSS 178
>pdb|3E0L|A Chain A, Computationally Designed Ammelide Deaminase
pdb|3E0L|B Chain B, Computationally Designed Ammelide Deaminase
Length = 455
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 252 AHMIRARDLVDKLKSLYPNYNYPKSFTEKEDEVMLTSEKLQKLGWSYRSLEE 303
+H+ RD V+ +K+LYP+Y K++T D+ L + K Y S EE
Sbjct: 240 SHISENRDEVEAVKNLYPSY---KNYTSVYDKNNLLTNKTVMAHGCYLSAEE 288
>pdb|2VGM|A Chain A, Structure Of Yeast Dom34 : A Protein Related To
Translation Termination Factor Erf1 And Involved In
No-Go Decay.
pdb|3IZQ|0 Chain 0, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
pdb|3J16|A Chain A, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 386
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 65 LDYDSVKSAIVGCNGVFHIACPAPSTTVPNPQMELLEPAVKGTLNVVK 112
++Y S +A+V G+ H+ S+T+ ++E P K T +V+K
Sbjct: 136 IEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLK 183
>pdb|2UZ9|A Chain A, Human Guanine Deaminase (Guad) In Complex With Zinc And
Its Product Xanthine.
pdb|4AQL|A Chain A, Human Guanine Deaminase In Complex With Valacyclovir
Length = 476
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 252 AHMIRARDLVDKLKSLYPNYNYPKSFTEKEDEVMLTSEKLQKLGWSYRSLEE 303
+H+ RD V+ +K+LYP+Y K++T D+ L + K Y S EE
Sbjct: 261 SHISENRDEVEAVKNLYPSY---KNYTSVYDKNNLLTNKTVMAHGCYLSAEE 309
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 6 ERVCVTGAGGFLASWVVKLLLSRDYF------VHGTAREPSD--EKNARLYELEKASENL 57
E+V VTG G++ S V LL Y H R E R+ EL ++
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL--TGRSV 60
Query: 58 KLFKADLLDYDSVKSAI--VGCNGVFHIA-CPAPSTTVPNPQMELLEPAVKGTLNVVKAC 114
+ + D+LD +++ V H A A +V P ++ + GT+ +++
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKP-LDYYRVNLTGTIQLLEIM 119
Query: 115 LEAKVKRVIVVSSGVAVGLNPRW 137
VK ++ SS G NP++
Sbjct: 120 KAHGVKNLVFSSSATVYG-NPQY 141
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 6 ERVCVTGAGGFLASWVVKLLLSRDYF------VHGTAREPSD--EKNARLYELEKASENL 57
E+V VTG G++ S V LL Y H R E R+ EL ++
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL--TGRSV 60
Query: 58 KLFKADLLDYDSVKSAI--VGCNGVFHIA-CPAPSTTVPNPQMELLEPAVKGTLNVVKAC 114
+ + D+LD +++ V H A A +V P ++ + GT+ +++
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKP-LDYYRVNLTGTIQLLEIM 119
Query: 115 LEAKVKRVIVVSSGVAVGLNPRW 137
VK ++ SS G NP++
Sbjct: 120 KAHGVKNLVFSSSATVYG-NPQY 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,729,761
Number of Sequences: 62578
Number of extensions: 331464
Number of successful extensions: 1152
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 79
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)