BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020926
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 114/203 (56%), Gaps = 9/203 (4%)
Query: 13 CGHCKKLAPEYEKLGASFK-KAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP 71
CGHCK+ APEYEK+ K K + + K+D L S++ V GYPTI+ KG +
Sbjct: 44 CGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKG--QA 101
Query: 72 KKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPW 131
YEG R+ E + V + P +VLT +NFDE+V D + +LVEFYAPW
Sbjct: 102 VDYEGSRTQEEIVAKVREVSQPD--WTPPPEVTLVLTKENFDEVVND-ADIILVEFYAPW 158
Query: 132 CGHCKNLAPTYEKVAAAFT-LEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG 190
CGHCK LAP YEK A + + +A +DA DLA+++ VSG+PTLK F KG
Sbjct: 159 CGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRP-- 216
Query: 191 EEYGGGRDLEDFVSFINEKCGTS 213
+Y G R+ V ++ E+ G +
Sbjct: 217 YDYNGPREKYGIVDYMIEQSGAA 239
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 102 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANL 160
+ V+VL NFD V DK VL+EFYAPWCGHCK AP YEK+A +D + VA +
Sbjct: 15 NGVLVLNDANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKI 73
Query: 161 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 208
DA LA ++ VSG+PT+K KG +Y G R E+ V+ + E
Sbjct: 74 DATSASVLASRFDVSGYPTIKILKKGQ--AVDYEGSRTQEEIVAKVRE 119
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
V V+ A+NFDEIV +++KDVL+EFYAPWCGHCKNL P Y+++ + + ++V+A +DA
Sbjct: 29 VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 88
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGT 212
D+ Y V GFPT+ F P K + ++Y GGR+L DF+S++ + +
Sbjct: 89 A-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATS 137
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG-SLEP 71
CGHCK L P+Y++LG K +++I K+D + + S Y V+G+PTI + P L P
Sbjct: 57 CGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNP 115
Query: 72 KKYEGPRSTEALAEYVNNEGGT 93
KKYEG R Y+ E +
Sbjct: 116 KKYEGGRELSDFISYLQREATS 137
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
V V+ A+NFDEIV +++KDVL+EFYAPWCGHCKNL P Y+++ + + ++V+A +DA
Sbjct: 354 VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 413
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKC 210
D+ Y V GFPT+ F P K + ++Y GGR+L DF+S++ +
Sbjct: 414 A-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREA 460
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 11/117 (9%)
Query: 102 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 159
S+V+ LT DNF+ + D +LVEF+APWCGH K LAP YE AAA L+ V +A
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYE--AAATRLKGIVPLAK 58
Query: 160 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE---YGGGRDLEDFVSFINEKCGTS 213
+D + KYGVSG+PTLK F +DGEE Y G R + VS + ++ G +
Sbjct: 59 VDCTANTNTCNKYGVSGYPTLKIF----RDGEEAGAYDGPRTADGIVSHLKKQAGPA 111
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CGH K+LAPEYE K V + KVDC + + C+KYGV GYPT++ F G E
Sbjct: 33 CGHAKRLAPEYEAAATRLKGI--VPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGE-EAG 89
Query: 73 KYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVL 124
Y+GPR+ + + ++ + G P++V + T + F + + DK ++
Sbjct: 90 AYDGPRTADGIVSHLKKQAG--------PASVPLRTEEEFKKFISDKDASIV 133
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG-SLEP 71
CGHCK L P+Y++LG K +++I K+D + + S Y V+G+PTI + P L P
Sbjct: 382 CGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNP 440
Query: 72 KKYEGPRSTEALAEYVNNEG 91
KKYEG R Y+ E
Sbjct: 441 KKYEGGRELSDFISYLQREA 460
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 7/109 (6%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT---LEDDVVVANL 160
V V+ A N++EIVLD +KDVL+EFYAPWCGHCK LAP YE++ A + +D VV+A +
Sbjct: 9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 68
Query: 161 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFINE 208
DA D+ ++ + GFPT+K +P G K Y G R +ED + FI E
Sbjct: 69 DATA-NDVPDE--IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 114
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 13 CGHCKKLAPEYEKLGASFKKAK---SVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69
CGHCK LAP+YE+LGA + K++ V+I KVD + +QG+PTI+ +P G+
Sbjct: 37 CGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDE---IQGFPTIKLYPAGAK 93
Query: 70 -EPKKYEGPRSTEALAEYVNNEG 91
+P Y G R+ E L +++ G
Sbjct: 94 GQPVTYSGSRTVEDLIKFIAENG 116
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
V V+ FD IV+D KDVL+EFYAPWCGHCK L P Y + + + D+V+A +DA
Sbjct: 9 VKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDAT 68
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGNKDG--EEYGGGRDLEDFVSFINEKCGTSRDGKGQLT 221
++Y V GFPT+ F P G+K + GG RDLE FI+E K +L+
Sbjct: 69 ANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTKEELS 128
Query: 222 STA 224
+
Sbjct: 129 GPS 131
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE-P 71
CGHCK+L P Y LG +K K ++I K+D + +Y V+G+PTI + P G + P
Sbjct: 37 CGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNP 96
Query: 72 KKYE-GPRSTEALAEYVN 88
K+E G R E L+++++
Sbjct: 97 IKFEGGNRDLEHLSKFID 114
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLD 161
+V+VL NF E L K +LVEFYAPWCGHCK LAP Y K A E ++ +A +D
Sbjct: 8 HVLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66
Query: 162 ADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTS 213
A + DLA++YGV G+PT+KFF G+ +EY GR+ +D V+++ ++ G +
Sbjct: 67 ATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG-SLE 70
CGHCK LAPEY K K S + + KVD E L +YGV+GYPTI++F G +
Sbjct: 36 CGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTAS 95
Query: 71 PKKYEGPRSTEALAEYVNNEGG 92
PK+Y R + + ++ G
Sbjct: 96 PKEYTAGREADDIVNWLKKRTG 117
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Query: 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 162
+V+ LT NF+ V+ LVEFYAPWCGHC+ L P ++K A A L+D V V ++A
Sbjct: 18 DVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATA--LKDVVKVGAVNA 75
Query: 163 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 203
DK++ L +YGV GFPT+K F E+Y GGR E V
Sbjct: 76 DKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 116
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CGHC++L PE++K + K V +G V+ D+H+SL +YGVQG+PTI+ F +P+
Sbjct: 47 CGHCQRLTPEWKKAATALKDV--VKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPE 104
Query: 73 KYEGPRSTEALAE 85
Y+G R+ EA+ +
Sbjct: 105 DYQGGRTGEAIVD 117
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDA 162
+ LT DNFD++V + + +LVEFYAPWCGHCK LAP YEK A + + +A +DA
Sbjct: 9 TLSLTKDNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDA 67
Query: 163 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 212
+ DLA+++ VSG+PTLK F KG +Y G R+ V ++ E+ G+
Sbjct: 68 TEQTDLAKRFDVSGYPTLKIFRKGRP--FDYNGPREKYGIVDYMIEQSGS 115
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 13 CGHCKKLAPEYEKLGASF-KKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP 71
CGHCKKLAPEYEK K++ + + KVD E L ++ V GYPT++ F KG P
Sbjct: 36 CGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPTLKIFRKG--RP 93
Query: 72 KKYEGPRSTEALAEYVNNEGGT 93
Y GPR + +Y+ + G+
Sbjct: 94 FDYNGPREKYGIVDYMIEQSGS 115
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---VVVANL 160
V VL NFD V DK VL+EFYAPWCGHCK AP YEK+A+ TL+D+ + VA +
Sbjct: 19 VWVLNDGNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIAS--TLKDNDPPIAVAKI 75
Query: 161 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQL 220
DA LA K+ VSG+PT+K KG +Y G R E+ V+ + E ++
Sbjct: 76 DATSASMLASKFDVSGYPTIKILKKGQ--AVDYDGSRTQEEIVAKVREVSQPDWTPPPEV 133
Query: 221 TS 222
TS
Sbjct: 134 TS 135
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFK-KAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP 71
CGHCK+ APEYEK+ ++ K + + K+D L SK+ V GYPTI+ KG +
Sbjct: 46 CGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKG--QA 103
Query: 72 KKYEGPRSTEALAEYV 87
Y+G R+ E + V
Sbjct: 104 VDYDGSRTQEEIVAKV 119
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
V VL NF+++ D+ K+V VEFYAPWCGHCK LAP ++K+ + +++V+A +D+
Sbjct: 251 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 310
Query: 164 KYKDLAEKYGVSGFPTLKFFP-KGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG 218
+ E V FPTLKFFP ++ +Y G R L+ F F+ E G +DG G
Sbjct: 311 ANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL-ESGG--QDGAG 361
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CGHCK+LAP ++KLG ++K ++++I K+D ++ K V +PT+++FP +
Sbjct: 279 CGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVK--VHSFPTLKFFPASADRTV 336
Query: 73 -KYEGPRSTEALAEYVNNEG 91
Y G R+ + +++ + G
Sbjct: 337 IDYNGERTLDGFKKFLESGG 356
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 70/117 (59%), Gaps = 11/117 (9%)
Query: 102 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 159
S+V+ LT DNF+ + D +LVEF+APWCGHCK LAP YE AAA L+ V +A
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLAK 58
Query: 160 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE---YGGGRDLEDFVSFINEKCGTS 213
+D + KYGVSG+PTLK F +DGEE Y G R + VS + ++ G +
Sbjct: 59 VDCTANTNTCNKYGVSGYPTLKIF----RDGEEAGAYDGPRTADGIVSHLKKQAGPA 111
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CGHCK+LAPEYE K V + KVDC + + C+KYGV GYPT++ F G E
Sbjct: 33 CGHCKRLAPEYEAAATRLKGI--VPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGE-EAG 89
Query: 73 KYEGPRSTEALAEYVNNEGG 92
Y+GPR+ + + ++ + G
Sbjct: 90 AYDGPRTADGIVSHLKKQAG 109
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
V VL NF+++ D+ K+V VEFYAPWCGHCK LAP ++K+ + +++V+A +D+
Sbjct: 9 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 68
Query: 164 KYKDLAEKYGVSGFPTLKFFP-KGNKDGEEYGGGRDLEDFVSFI 206
+ E V FPTLKFFP ++ +Y G R L+ F F+
Sbjct: 69 --ANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 110
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CGHCK+LAP ++KLG ++K ++++I K+D ++ K V +PT+++FP +
Sbjct: 37 CGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVK--VHSFPTLKFFPASADRTV 94
Query: 73 -KYEGPRSTEALAEYV 87
Y G R+ + +++
Sbjct: 95 IDYNGERTLDGFKKFL 110
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF--TLEDDVVVANL 160
+V+ LT D+FD+ VLD +VEFYAPWCGHCKNL P + A+ + V +A +
Sbjct: 8 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAV 67
Query: 161 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 204
DA + LA +YG+ GFPT+K F KG +Y GGR D VS
Sbjct: 68 DATVNQVLASRYGIRGFPTIKIFQKGESP-VDYDGGRTRSDIVS 110
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKS--VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE 70
CGHCK L PE+ + K+ V + VD ++ L S+YG++G+PTI+ F KG
Sbjct: 37 CGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGE-S 95
Query: 71 PKKYEGPRS 79
P Y+G R+
Sbjct: 96 PVDYDGGRT 104
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 102 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANL 160
S+V L N DEIV D KDVLV +YAPWCGHCK LAPTY+++A + DV++A L
Sbjct: 358 SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL 417
Query: 161 DADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTSRDGKG 218
D ++ + G+PT+ +P G K + Y G R L+ FI E DGK
Sbjct: 418 --DHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKA 474
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 68/112 (60%), Gaps = 5/112 (4%)
Query: 97 IAAVPSNVVVLTADNFDEIVLDKSKD-VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 155
+A S VV L D+F+E + +S D VL EF+APWCGHCKN+AP Y K AA +E ++
Sbjct: 9 VAPEDSAVVKLATDSFNEYI--QSHDLVLAEFFAPWCGHCKNMAPEYVK-AAETLVEKNI 65
Query: 156 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFI 206
+A +D + +DL ++ + GFP+LK F + + +Y G R E V F+
Sbjct: 66 TLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFM 117
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CGHCK +APEY K + + K++ + ++DC E++ LC ++ + G+P+++ F +
Sbjct: 43 CGHCKNMAPEYVKAAETLVE-KNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNS 101
Query: 73 -KYEGPRSTEALAEYVNNEGGTNVKIAA 99
YEGPR+ EA+ +++ + V + A
Sbjct: 102 IDYEGPRTAEAIVQFMIKQSQPAVAVVA 129
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG-SLE 70
CGHCK+LAP Y++L ++ A S VLI K+D E+ ++GYPTI +P G E
Sbjct: 388 CGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND--VRGVVIEGYPTIVLYPGGKKSE 445
Query: 71 PKKYEGPRSTEALAEYVNNEGGTNV 95
Y+G RS ++L +++ G +V
Sbjct: 446 SVVYQGSRSLDSLFDFIKENGHFDV 470
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 20 APEYEKLGASFKKAKSVL-----IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKY 74
+P L +KA ++L +G +DC H+ LC+ Y +Q YPT F + S+ +Y
Sbjct: 467 SPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIH--EY 524
Query: 75 EGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKD--VLVEFYAPWC 132
EG S E + E++ + PS VV LT F+E+V + D +V+FY+PW
Sbjct: 525 EGHHSAEQILEFIEDLRN--------PS-VVSLTPSTFNELVKQRKHDEVWMVDFYSPWS 575
Query: 133 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 192
+ L P ++++A TL + V ++D +Y + V +P ++F+P+ + +
Sbjct: 576 HPSQVLMPEWKRMAR--TLTGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQ 633
Query: 193 Y----GGGRDLEDFVSF 205
Y G RD S+
Sbjct: 634 YHSYNGWNRDAYSLRSW 650
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 19 LAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR 78
L PE++++ + + +G VDC ++ S C++ VQ YP I+++P+ S + +Y
Sbjct: 581 LMPEWKRMARTLTGL--INVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYN 638
Query: 79 STEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNL 138
A + + G + +P + LT F+E VL +V+FYAPW G +N
Sbjct: 639 GWNRDAYSLRSWG-----LGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNF 693
Query: 139 APTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 183
AP +E +A ++ V +D Y +K G+ +P++K +
Sbjct: 694 APEFELLAR--MIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLY 736
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 99 AVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 158
+V S+V L NF DK + LV+F+APW + L P K A+ L + V
Sbjct: 437 SVNSHVTTLGPQNFP--ASDK-EPWLVDFFAPWSPPSRALLPELRK--ASTLLYGQLKVG 491
Query: 159 NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 208
LD ++ L Y + +PT F + + EY G E + FI +
Sbjct: 492 TLDCTIHEGLCNMYNIQAYPTTVVFNQSSI--HEYEGHHSAEQILEFIED 539
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 16/173 (9%)
Query: 15 HCKKLAPEYEKLGASFKKAKSVL-IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKK 73
H LAP + + K+ +L IG V+C + + LC GV YP++ F G + K
Sbjct: 147 HSHDLAPTWREFA---KEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSG-MAAVK 202
Query: 74 YEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCG 133
Y G RS E+L + + V S V L+ NF + + + V + +C
Sbjct: 203 YNGDRSKESLVAFA---------MQHVRSTVTELSTGNFVNAI-ETAFAAGVGWLITFCS 252
Query: 134 HCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 186
++ + ++ + L+ V V +D D L + + T +FP G
Sbjct: 253 KGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTA-STTAYFPPG 304
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ L FD V + + V FY+P H +LAPT+ + A + N D
Sbjct: 118 IITLERREFDAAV-NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDD 176
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 205
+ L GV+ +P+L F G +Y G R E V+F
Sbjct: 177 RM--LCRMKGVNSYPSLFIFRSGMA-AVKYNGDRSKESLVAF 215
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 102 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA-AAFTLEDDVVVANL 160
S V+ LT +NFD+ + + ++FYAPWCGHCK LAPT+E+++ F V +A +
Sbjct: 5 STVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 62
Query: 161 DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 206
D +++ KY V G+PTL F +G K E+ GGRDL+ F+
Sbjct: 63 DCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 107
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 13 CGHCKKLAPEYEKLGA-SFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP 71
CGHCK LAP +E+L F V I +VDC +++CSKY V+GYPT+ F +G +
Sbjct: 33 CGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLF-RGGKKV 91
Query: 72 KKYEGPRSTEALAEYVNNE 90
++ G R ++L +V ++
Sbjct: 92 SEHSGGRDLDSLHRFVLSQ 110
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA-AAFTLEDDVVVANLD 161
V+ LT +NFD+ + + ++FYAPWCGHCK LAPT+E+++ F V +A +D
Sbjct: 8 TVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVD 65
Query: 162 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 206
+++ KY V G+PTL F +G K E+ GGRDL+ F+
Sbjct: 66 CTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 109
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 13 CGHCKKLAPEYEKLGA-SFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP 71
CGHCK LAP +E+L F V I +VDC +++CSKY V+GYPT+ F +G +
Sbjct: 35 CGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLF-RGGKKV 93
Query: 72 KKYEGPRSTEALAEYV 87
++ G R ++L +V
Sbjct: 94 SEHSGGRDLDSLHRFV 109
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA-AAFTLEDDVVVANLD 161
V+ LT +NFD+ + + ++FYAPWCGHCK LAPT+E+++ F V +A +D
Sbjct: 1 TVLALTENNFDDTIAEGI--TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVD 58
Query: 162 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 206
+++ KY V G+PTL F +G K E+ GGRDL+ F+
Sbjct: 59 CTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 102
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 13 CGHCKKLAPEYEKLGA-SFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP 71
CGHCK LAP +E+L F V I +VDC +++CSKY V+GYPT+ F +G +
Sbjct: 28 CGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLF-RGGKKV 86
Query: 72 KKYEGPRSTEALAEYVNNE 90
++ G R ++L +V ++
Sbjct: 87 SEHSGGRDLDSLHRFVLSQ 105
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 102 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEK----VAAAFTLEDDVVV 157
S + L +N DEI L+ + LV FYA WC + L P +E+ + F E+ VV
Sbjct: 5 SEITSLDTENIDEI-LNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVF 63
Query: 158 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 209
A +D D++ D+A++Y +S +PTLK F G EY G R ++ +I ++
Sbjct: 64 ARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQ 115
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 10 CDRCGHCKKLAPEYEK----LGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP 65
D C + L P +E+ + F V+ +VDCD+H + +Y + YPT++ F
Sbjct: 31 ADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFR 90
Query: 66 KGSLEPKKYEGPRSTEALAEYVNNEGGTNVK 96
G ++Y G RS +ALA+Y+ + ++
Sbjct: 91 NGXXXKREYRGQRSVKALADYIRQQKSDPIQ 121
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 24/120 (20%)
Query: 101 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV----- 155
PS VV LT + FD IV+D KDV V +Y PW H AA L DD+
Sbjct: 14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHS----------VAAMRLWDDLSMSQS 63
Query: 156 --------VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFI 206
V A +D +KY D+ E+ VSGFPT++++ + +K EY G R L SF+
Sbjct: 64 QKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 107 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 166
LT +FD+ + + + LVEFYAPWCGHCK L+ T+ K A V N D +K K
Sbjct: 22 LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNK 81
Query: 167 DLAEKYGVSGFPTLKFFPKGNKD----------------GEEYGGGRDLEDFVSF 205
L KY V+GFPTL F D E Y G R L V F
Sbjct: 82 ALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDF 136
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 34/188 (18%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CGHCKKL+ + K V D +++K+LC+KY V G+PT+ F ++
Sbjct: 47 CGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLS 106
Query: 73 K----------------YEGPRSTEALAEYVNNEGGTNVK-----------IAAVPSNVV 105
K Y G R+ + ++ + + VK + P V
Sbjct: 107 KPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSV 166
Query: 106 VLTA--DNFDEIVLDKSKDVL--VEFYAPWCGHCKNLA---PTYEKVAAAFTLEDDVVVA 158
VL + D + + D L +FY+ K L PTYEK F V+
Sbjct: 167 VLFSKQDKISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPE 226
Query: 159 NLDADKYK 166
+DK K
Sbjct: 227 QRQSDKSK 234
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 107 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 166
+T D+F++ VL K VLV+F+A WCG C+ +AP+ E +AA + D + + L+ D+
Sbjct: 10 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLNIDENP 67
Query: 167 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVS 204
A KYGV PTL + G G RDLEDF++
Sbjct: 68 GTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA 111
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69
CG C+++AP E + A + + I K++ DE+ +KYGV PT+ + G +
Sbjct: 35 CGPCRQIAPSLEAIAAEY--GDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEV 89
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCGHCK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CGHCK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGHCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP E++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP E++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILEEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 111 NFDEIVLDKSK----DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 166
D +L +++ +LV+F+APWCG C+ +AP ++ AAA TL V +A +D +
Sbjct: 51 GIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQ--AAAATLAGQVRLAKIDTQAHP 108
Query: 167 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 212
+A ++ + G P F KG ++ G R + V F+ K G
Sbjct: 109 AVAGRHRIQGIPAFILFHKG-RELARAAGARPASELVGFVRGKLGA 153
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG C+++AP+++ A+ A V + K+D H ++ ++ +QG P F KG E
Sbjct: 76 CGPCRQMAPQFQAAAATL--AGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGR-ELA 132
Query: 73 KYEGPRSTEALAEYVNNEGGTN 94
+ G R L +V + G
Sbjct: 133 RAAGARPASELVGFVRGKLGAR 154
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIAEEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 194
+ A KYG+ G PTL F G+ + G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGDVAATKVG 92
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGDVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 71
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 72 QNPGTAPKYGIRGIPTLLLFKNG 94
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 42 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 99
Query: 73 KYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVL 107
K G S L E+++ N+ +A+ S V+VL
Sbjct: 100 KV-GALSKGQLKEFLD----ANLAGSAMESTVMVL 129
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 K 73
K
Sbjct: 90 K 90
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAC 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 194
+ A KYG+ G PTL F G + G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVG 92
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 K 73
K
Sbjct: 90 K 90
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADDYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 110 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA 169
D F +VL+ S VLV+F+APWCG C+ +AP +++A + +D + L+ D+ ++A
Sbjct: 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEY--KDKLKCVKLNTDESPNVA 66
Query: 170 EKYGVSGFPTLKFFPKGNKDGEEYGGG 196
+YG+ PT+ F KG K E G
Sbjct: 67 SEYGIRSIPTIMVF-KGGKKCETIIGA 92
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 13 CGHCKKLAPEYEKLGASFK-KAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG C+ +AP +++ +K K K V K++ DE ++ S+YG++ PTI F G
Sbjct: 31 CGPCRIIAPVVDEIAGEYKDKLKCV---KLNTDESPNVASEYGIRSIPTIMVFKGG 83
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 64/109 (58%), Gaps = 10/109 (9%)
Query: 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 162
NV V+T +N+ E++ D ++EFYAPWC C+NL P +E A + + +V +A +D
Sbjct: 8 NVRVITDENWRELL---EGDWMIEFYAPWCPACQNLQPEWESF-AEWGEDLEVNIAKVDV 63
Query: 163 DKYKDLAEKYGVSGFPTLKFFPKGNKDGE--EYGGGRDLEDFVSFINEK 209
+ L+ ++ ++ PT+ KDGE Y G R +DF++FI++K
Sbjct: 64 TEQPGLSGRFIINALPTIYHC----KDGEFRRYQGPRTKKDFINFISDK 108
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
C C+ L PE+E A + + V I KVD E L ++ + PTI G +
Sbjct: 34 CPACQNLQPEWESF-AEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKDGEF--R 90
Query: 73 KYEGPRSTEALAEYVNN 89
+Y+GPR+ + ++++
Sbjct: 91 RYQGPRTKKDFINFISD 107
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP + +A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP + + ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDDIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 62
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 63 QNPGTAPKYGIRGTPTLLLFKNG 85
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 33 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGTPTLLLFKNGEVAAT 90
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 91 KV-GALSKGQLKEFLD 105
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG C+ +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG C+ +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCEMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ +T D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT ++FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+F+ VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ PTL F G
Sbjct: 62 QNPGTAPKYGIRSIPTLLLFKNG 84
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KYG++ PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRSIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 100 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 159
+P + LT F+E VL +V+FYAPWCG C+N AP +E +A ++ V
Sbjct: 1 LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLAR--MIKGKVRAGK 58
Query: 160 LDADKYKDLAEKYGVSGFPTLKFFP--KGNKD-GEEYGGGRDLEDFVSFINEKCGT 212
+D Y +K G+ +P++K + + K EE RD + + I K T
Sbjct: 59 VDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET 114
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWF 64
CG C+ APE+E L K V GKVDC + C K G++ YP+++ +
Sbjct: 33 CGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSVKLY 82
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG K +AP +++A + + + VA L+ D
Sbjct: 24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEY--QGKLTVAKLNID 81
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 82 QNPGTAPKYGIRGIPTLLLFKNG 104
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 10 CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69
+ CG K +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 49 AEWCGPAKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 106
Query: 70 EPKKYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 107 AATKV-GALSKGQLKEFLD 124
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 64.7 bits (156), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 162
+V+ +T +NF++ VL K VLV+F+APWCG C+ +AP E++A + E V V ++
Sbjct: 2 SVIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEY--EGKVKVVKVNV 59
Query: 163 DKYKDLAEKYGVSGFPTLKFFPKG 186
D+ + A +YG+ PTL F G
Sbjct: 60 DENPNTAAQYGIRSIPTLLLFKNG 83
Score = 35.0 bits (79), Expect = 0.049, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG C+ +AP E+L ++ V+ VD E+ + ++YG++ PT+ F G +
Sbjct: 31 CGPCRMIAPIIEELAKEYEGKVKVVKVNVD--ENPNTAAQYGIRSIPTLLLFKNGQV-VD 87
Query: 73 KYEGPRSTEALAEYVN 88
+ G + EAL E ++
Sbjct: 88 RLVGAQPKEALKERID 103
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WC CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
C CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CVWCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG K +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 10 CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69
+ CG K +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 29 AEWCGPSKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEV 86
Query: 70 EPKKYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 87 AATKV-GALSKGQLKEFLD 104
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGH-CKNLAPTYEKVAAAFTLEDDVVVANLDA 162
++ LT D+FD VL +LV+F+A WCG CK +AP +++A + + + VA L+
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEY--QGKLTVAKLNI 61
Query: 163 DKYKDLAEKYGVSGFPTLKFFPKG 186
D+ A KYG+ G PTL F G
Sbjct: 62 DQNPGTAPKYGIRGIPTLLLFKNG 85
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 13 CGH-CKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP 71
CG CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGRPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 89
Query: 72 KKYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 TKV-GALSKGQLKEFLD 105
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WCG CK +A +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +A +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CGPCKLIASILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 102 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 161
S + +T +F VL +K VLV+F+A WCG CK +AP E++A D+ VA LD
Sbjct: 7 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERA--TDLTVAKLD 64
Query: 162 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 207
D + A + V PTL F G G R+L D V +N
Sbjct: 65 VDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 116
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG CK +AP E++ ++A + + K+D D + + V PT+ F G
Sbjct: 37 CGPCKMVAPVLEEIAT--ERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDG 89
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 102 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 161
S + +T +F VL +K VLV+F+A WCG CK +AP E++A D+ VA LD
Sbjct: 12 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLD 69
Query: 162 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 207
D + A + V PTL F G G R+L D V +N
Sbjct: 70 VDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 121
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG CK +AP E++ ++A + + K+D D + + V PT+ F G
Sbjct: 42 CGPCKMVAPVLEEIAT--ERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDG 94
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K V+++F+A WCG CK ++P +++ F D+VVV +D D+ +D+A +Y +S PT
Sbjct: 26 KLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTF 83
Query: 181 KFFPKGNKDGEEYGG--GRDLEDFV 203
F G K EE+ G + LED +
Sbjct: 84 VFLKNGVK-VEEFAGANAKRLEDVI 107
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG CK ++P+ +L F A +V++ KVD DE + + +Y + PT + G
Sbjct: 37 CGPCKMISPKLVELSTQF--ADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNG 89
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K V+++F+A WCG CK ++P +++ F D+VVV +D D+ +D+A +Y +S PT
Sbjct: 21 KLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTF 78
Query: 181 KFFPKGNKDGEEYGG--GRDLEDFV 203
F G K EE+ G + LED +
Sbjct: 79 VFLKNGVK-VEEFAGANAKRLEDVI 102
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG CK ++P+ +L F A +V++ KVD DE + + +Y + PT + G
Sbjct: 32 CGPCKMISPKLVELSTQF--ADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNG 84
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 107 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 166
L + NFDE + K+K V+V+F+A WC C LAP E++A + V L+ ++ +
Sbjct: 11 LNSKNFDEFI-TKNKIVVVDFWAEWCAPCLILAPVIEELANDYP---QVAFGKLNTEESQ 66
Query: 167 DLAEKYGVSGFPTLKFFPKG 186
D+A +YG+ PT+ FF G
Sbjct: 67 DIAMRYGIMSLPTIMFFKNG 86
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 11 DRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69
+ C C LAP E+L + + V GK++ +E + + +YG+ PTI +F G L
Sbjct: 33 EWCAPCLILAPVIEELANDYPQ---VAFGKLNTEESQDIAMRYGIMSLPTIMFFKNGEL 88
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 108 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 167
+A +D + K V+V+F+A WCG CK +AP EK A ++ D LD D+ D
Sbjct: 7 SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS---DAAFYKLDVDEVSD 63
Query: 168 LAEKYGVSGFPTLKFFPKGNKD 189
+A+K VS PTL F+ KG K+
Sbjct: 64 VAQKAEVSSMPTLIFY-KGGKE 84
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG CK +AP EK + A K+D DE + K V PT+ ++ G
Sbjct: 31 CGPCKMIAPMIEKFAEQYSDAA---FYKLDVDEVSDVAQKAEVSSMPTLIFYKGG 82
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 108 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 167
+A +D + K V+V+F+A WCG CK +AP EK A ++ D LD D+ D
Sbjct: 14 SASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS---DAAFYKLDVDEVSD 70
Query: 168 LAEKYGVSGFPTLKFFPKGNKD 189
+A+K VS PTL F+ KG K+
Sbjct: 71 VAQKAEVSSMPTLIFY-KGGKE 91
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG CK +AP EK + A K+D DE + K V PT+ ++ G
Sbjct: 38 CGPCKMIAPMIEKFAEQYSDAA---FYKLDVDEVSDVAQKAEVSSMPTLIFYKGG 89
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD VL +LV+F+A WC K +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KYG+ G PTL F G
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNG 84
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
C K +AP +++ ++ +V K++ D++ KYG++G PT+ F G +
Sbjct: 32 CACAKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 60.8 bits (146), Expect = 9e-10, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 105 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 164
+ LT NF + + K VLV+F+A WCG C+ +AP E+ A A D V VA L+ D+
Sbjct: 3 MTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDE 59
Query: 165 YKDLAEKYGVSGFPTLKFFPKG 186
+ ++G+ PTL F G
Sbjct: 60 NPETTSQFGIMSIPTLILFKGG 81
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG C+ +AP E+ + A V + K++ DE+ S++G+ PT+ F KG K
Sbjct: 29 CGPCRMMAPVLEEFAEA--HADKVTVAKLNVDENPETTSQFGIMSIPTLILF-KGGRPVK 85
Query: 73 KYEGPRSTEAL 83
+ G + E L
Sbjct: 86 QLIGYQPKEQL 96
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 105 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 164
+ LT NF + + K VLV+F+A WCG C+ +AP E+ A A D V VA L+ D+
Sbjct: 3 MTLTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDE 59
Query: 165 YKDLAEKYGVSGFPTLKFFPKG 186
+ ++G+ PTL F G
Sbjct: 60 NPETTSQFGIMSIPTLILFKGG 81
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG C+ +AP E+ + A V + K++ DE+ S++G+ PT+ F G EP
Sbjct: 29 CGPCRMMAPVLEEFAEA--HADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGG--EPV 84
Query: 73 K 73
K
Sbjct: 85 K 85
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 99 AVPSNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 156
+ S ++ L D E +L++ K+ V+V+F+A WCG CK +AP +++++ + D +
Sbjct: 10 VIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAI 65
Query: 157 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 196
+D DK ++ A KY +S PT G K G+ G
Sbjct: 66 FVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGAS 105
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 60
CG CK +AP +++L + + KVD D+ + KY + PT
Sbjct: 45 CGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPT 88
>pdb|2QC7|A Chain A, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
pdb|2QC7|B Chain B, Crystal Structure Of The Protein-disulfide Isomerase
Related Chaperone Erp29
Length = 240
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 26/216 (12%)
Query: 116 VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD-----LAE 170
V+ KSK VLV+F + K ++++A DD++VA + Y D L+E
Sbjct: 18 VIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSE 75
Query: 171 KYGV--SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE-KCGTSR---DGKGQLTSTA 224
KY + +P F +DG D E+ V + K G + G+G
Sbjct: 76 KYKLDKESYPVFYLF----RDG-------DFENPVPYTGAVKVGAIQRWLKGQGVYLGMP 124
Query: 225 GIVASLDALVKEFVAASGDE-KKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSD 283
G + DAL EF+ ASG E ++A+ + + + ++ + + + YLK+ +D+G D
Sbjct: 125 GCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGED 184
Query: 284 YAKKEIDRLQRMLDKS-ISAAKADEFVLKKNILSTF 318
+ E+ R+ R+++K+ +S K +E NIL+ F
Sbjct: 185 FPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAF 220
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 102 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 159
S ++ L D E +L++ K+ V+V+F+A WCG CK +AP +++++ + D +
Sbjct: 4 SKLIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVK 59
Query: 160 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFV 203
+D DK ++ A KY +S PT G K G+ G +ED +
Sbjct: 60 VDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMI 104
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 60
CG CK +AP +++L + + KVD D+ + KY + PT
Sbjct: 36 CGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPT 79
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 111 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 170
++ E VL+ V+V+F+APWCG CK +AP +++A ++ + V L+ D+ +A
Sbjct: 8 SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIAT 65
Query: 171 KYGVSGFPTLKFFPKGNK 188
+Y + PT+ FF G +
Sbjct: 66 QYNIRSIPTVLFFKNGER 83
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG CK +AP ++L + + + + K++ DE + ++Y ++ PT+ +F G
Sbjct: 29 CGPCKLIAPVIDELAKEY--SGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNG 81
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 111 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 170
++ E VL+ V+V+F+APWCG CK +AP +++A ++ + V L+ D+ +A
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIAT 66
Query: 171 KYGVSGFPTLKFFPKGNK 188
+Y + PT+ FF G +
Sbjct: 67 QYNIRSIPTVLFFKNGER 84
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG CK +AP ++L + + + + K++ DE + ++Y ++ PT+ +F G
Sbjct: 30 CGPCKLIAPVIDELAKEY--SGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNG 82
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 102 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 161
S + +T +F VL +K VLV+F+A WCG K +AP E++A D+ VA LD
Sbjct: 9 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERA--TDLTVAKLD 66
Query: 162 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 207
D + A + V PTL F G G R+L D V +N
Sbjct: 67 VDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 118
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG K +AP E++ ++A + + K+D D + + V PT+ F G
Sbjct: 39 CGPSKMVAPVLEEIAT--ERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDG 91
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 107 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 166
+T NFDE L + VLV+F+A WC C+ +AP E++A + E ++VA LD D+
Sbjct: 7 VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENP 63
Query: 167 DLAEKYGVSGFPTLKFFPKGNKDGE 191
A +Y V PT+ F KDG+
Sbjct: 64 KTAXRYRVXSIPTVILF----KDGQ 84
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
C C+ +AP E++ ++ +L+ K+D DE+ +Y V PT+ F G
Sbjct: 31 CAPCRXIAPILEEIAKEYEG--KLLVAKLDVDENPKTAXRYRVXSIPTVILFKDGQ 84
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 107 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 166
+T NFDE L + VLV+F+A WC C+ +AP E++A + E ++VA LD D+
Sbjct: 6 VTDQNFDE-TLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENP 62
Query: 167 DLAEKYGVSGFPTLKFFPKGNKDGE 191
A +Y V PT+ F KDG+
Sbjct: 63 KTAXRYRVXSIPTVILF----KDGQ 83
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
C C+ +AP E++ ++ +L+ K+D DE+ +Y V PT+ F G
Sbjct: 30 CAPCRXIAPILEEIAKEYEG--KLLVAKLDVDENPKTAXRYRVXSIPTVILFKDGQ 83
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 105 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 164
+V + FD I+ +++ V+V+F+A WCG CK +AP YE+ + +T +V +D D+
Sbjct: 12 IVTSQAEFDSII-SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDE 67
Query: 165 YKDLAEKYGVSGFPTLKFFPKGN 187
++ EK ++ PT K + G+
Sbjct: 68 VSEVTEKENITSMPTFKVYKNGS 90
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 11 DRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
+ CG CK++AP YE+ ++ K ++ KVD DE + K + PT + + GS
Sbjct: 36 EWCGPCKRIAPFYEECSKTYTK---MVFIKVDVDEVSEVTEKENITSMPTFKVYKNGS 90
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ LT D+FD ++ +LV+F+A WCG CK +AP +++A + + + VA L+ D
Sbjct: 4 IIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKG 186
+ A KY G PTL F G
Sbjct: 62 QNPGTAPKYIERGIPTLLLFKNG 84
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP +++ ++ +V K++ D++ KY +G PT+ F G +
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYIERGIPTLLLFKNGEVAAT 89
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 90 KV-GALSKGQLKEFLD 104
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 108 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 167
TA FD + + K V+V+FYA WCG CK +AP EK + + D LD D+ D
Sbjct: 7 TASEFDSAIA-QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGD 62
Query: 168 LAEKYGVSGFPTLKFFPKGNKDGEEYGGG 196
+A+K VS PTL F G + + G
Sbjct: 63 VAQKNEVSAMPTLLLFKNGKEVAKVVGAN 91
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG CK +AP EK + +A K+D DE + K V PT+ F G
Sbjct: 30 CGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGDVAQKNEVSAMPTLLLFKNG 81
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 108 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 167
TA FD + + K V+V+FYA WCG CK +AP EK + + D LD D+ D
Sbjct: 13 TASEFDSAIA-QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGD 68
Query: 168 LAEKYGVSGFPTLKFFPKGNKDGEEYGGG 196
+A+K VS PTL F G + + G
Sbjct: 69 VAQKNEVSAMPTLLLFKNGKEVAKVVGAN 97
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG CK +AP EK + +A K+D DE + K V PT+ F G
Sbjct: 36 CGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGDVAQKNEVSAMPTLLLFKNG 87
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 58.2 bits (139), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 105 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 164
+ LT NF + + VLV+F+A WCG C+ +AP E+ A A D V VA L+ D+
Sbjct: 3 MTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDE 59
Query: 165 YKDLAEKYGVSGFPTLKFFPKG 186
+ ++G+ PTL F G
Sbjct: 60 NPETTSQFGIMSIPTLILFKGG 81
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG C+ +AP E+ + A V + K++ DE+ S++G+ PT+ F KG K
Sbjct: 29 CGPCRMMAPVLEEFAEA--HADKVTVAKLNVDENPETTSQFGIMSIPTLILF-KGGRPVK 85
Query: 73 KYEGPRSTEAL 83
+ G + E L
Sbjct: 86 QLIGYQPKEQL 96
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 58.2 bits (139), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 105 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 164
+ LT NF + + VLV+F+A WCG C+ +AP E+ A A D V VA L+ D+
Sbjct: 3 MTLTDANFQQ-AIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDE 59
Query: 165 YKDLAEKYGVSGFPTLKFFPKG 186
+ ++G+ PTL F G
Sbjct: 60 NPETTSQFGIMSIPTLILFKGG 81
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG C+ +AP E+ + A V + K++ DE+ S++G+ PT+ F G EP
Sbjct: 29 CGPCRMMAPVLEEFAEA--HADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGG--EPV 84
Query: 73 K 73
K
Sbjct: 85 K 85
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF 177
D K V+++F A WCG C+ +AP + + A F + +D D+ KD+AE Y V
Sbjct: 26 DTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVEAM 82
Query: 178 PTLKFFPKGNKDGEEYGGGRD 198
PT F G K GG +D
Sbjct: 83 PTFLFIKDGEKVDSVVGGRKD 103
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG C+ +AP + + F A + KVD DE K + Y V+ PT + G
Sbjct: 40 CGPCRVIAPVFAEYAKKFPGA---IFLKVDVDELKDVAEAYNVEAMPTFLFIKDG 91
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 16/97 (16%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWC--------------GHCKNLAPTYEKVAAAF 149
++ LT D+FD VL +LV+F+A WC G CK +AP +++A +
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64
Query: 150 TLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 186
+ + VA L+ D+ A KYG+ G PTL F G
Sbjct: 65 --QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 9 KCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
+ D G CK +AP +++ ++ +V K++ D++ KYG++G PT+ F G
Sbjct: 43 RYDLVGPCKMIAPILDEIADEYQGKLTV--AKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 100
Query: 69 LEPKKYEGPRSTEALAEYVN 88
+ K G S L E+++
Sbjct: 101 VAATKV-GALSKGQLKEFLD 119
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 111 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 170
+F + V++ V+V+F+A WCG CK L P EK+ A VV+A +D D + DLA
Sbjct: 22 DFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAK--QHGKVVMAKVDIDDHTDLAI 79
Query: 171 KYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 211
+Y VS PT+ G+ +++ G +D + +F+ + G
Sbjct: 80 EYEVSAVPTVLAMKNGDV-VDKFVGIKDEDQLEAFLKKLIG 119
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK L P EK+ A K+ V++ KVD D+H L +Y V PT+ G +
Sbjct: 43 CGPCKILGPRLEKMVA--KQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVV-D 99
Query: 73 KYEGPRSTEALAEYV 87
K+ G + + L ++
Sbjct: 100 KFVGIKDEDQLEAFL 114
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 105 VVLTADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
V+ TA + ++++ +K + ++V+F+A WCG C+N+AP E +A +V A +D D
Sbjct: 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVD 59
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 198
+ ++ A KY V+ PT F G K+ + + G +
Sbjct: 60 QNEEAAAKYSVTAMPTFVFIKDG-KEVDRFSGANE 93
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG C+ +AP+ E L K+ V KVD D+++ +KY V PT + G E
Sbjct: 31 CGPCRNIAPKVEALA---KEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGK-EVD 86
Query: 73 KYEGPRST 80
++ G T
Sbjct: 87 RFSGANET 94
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 108 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 167
+A +D + K V+V+F+A WCG K +AP EK A ++ D LD D+ D
Sbjct: 15 SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS---DAAFYKLDVDEVSD 71
Query: 168 LAEKYGVSGFPTLKFFPKGNKD 189
+A+K VS PTL F+ KG K+
Sbjct: 72 VAQKAEVSSMPTLIFY-KGGKE 92
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG K +AP EK + A K+D DE + K V PT+ ++ G
Sbjct: 39 CGPSKMIAPMIEKFAEQYSDAA---FYKLDVDEVSDVAQKAEVSSMPTLIFYKGG 90
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 108 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 167
+A +D + K V+V+F+A WCG K +AP EK A ++ D LD D+ D
Sbjct: 7 SASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYS---DAAFYKLDVDEVSD 63
Query: 168 LAEKYGVSGFPTLKFFPKGNKD 189
+A+K VS PTL F+ KG K+
Sbjct: 64 VAQKAEVSSMPTLIFY-KGGKE 84
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG K +AP EK + A K+D DE + K V PT+ ++ G
Sbjct: 31 CGPSKMIAPMIEKFAEQYSDAA---FYKLDVDEVSDVAQKAEVSSMPTLIFYKGG 82
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASESEVKSMPTF 77
Query: 181 KFFPKGNKDGEEYGGGRD 198
+FF KG K GE G ++
Sbjct: 78 QFFKKGQKVGEFSGANKE 95
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG CK + P + L +K +V+ +VD D+ + + S+ V+ PT Q+F KG
Sbjct: 32 CGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFKKG 83
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKSMPTF 77
Query: 181 KFFPKGNKDGEEYGGGRD 198
+FF KG K GE G ++
Sbjct: 78 QFFKKGQKVGEFSGANKE 95
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
CG CK + P + L +K +V+ +VD D+ + + S+ V+ PT Q+F KG
Sbjct: 32 CGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQ 84
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 120 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 179
+K V+++FYA WCG CK +AP E+++ + + DVV +D D+ +D+A+ ++ PT
Sbjct: 20 NKLVVIDFYATWCGPCKMIAPKLEELSQSMS---DVVFLKVDVDECEDIAQDNQIACMPT 76
Query: 180 LKFFPKGNKDGEEYGGGRD 198
F G K G D
Sbjct: 77 FLFMKNGQKLDSLSGANYD 95
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
CG CK +AP+ E+L S V+ KVD DE + + + PT + G
Sbjct: 32 CGPCKMIAPKLEELSQSM---SDVVFLKVDVDECEDIAQDNQIACMPTFLFMKNGQ 84
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 105 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 164
V+ + D F + V K V+++F+A WCG CK + P +EK++ D V +D D+
Sbjct: 19 VISSYDQFKQ-VTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT-PAGDKVGFYKVDVDE 76
Query: 165 YKDLAEKYGVSGFPTLKFFPKGNK 188
+A++ G+ PT FF G K
Sbjct: 77 QSQIAQEVGIRAMPTFVFFKNGQK 100
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG CK + P +EK+ + V KVD DE + + G++ PT +F G
Sbjct: 45 CGPCKMIGPVFEKISDT-PAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNG 98
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASEXEVKCMPTF 77
Query: 181 KFFPKGNKDGEEYGGGRD 198
+FF KG K GE G ++
Sbjct: 78 QFFKKGQKVGEFSGANKE 95
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
CG CK + P + L +K +V+ +VD D+ + + S+ V+ PT Q+F KG
Sbjct: 32 CGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQFFKKGQ 84
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 117 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 174
LD + D V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVASEAEV 71
Query: 175 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 208
PT +FF KG K GE G + E + INE
Sbjct: 72 KATPTFQFFKKGQKVGEFSGANK--EKLEATINE 103
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
CG CK + P + L +K +V+ +VD D+ + + S+ V+ PT Q+F KG
Sbjct: 32 CGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKKGQ 84
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 105 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 164
+VLT +NFDE++ + +K VLV+ +A WC C P Y+KVA + + V L+ D+
Sbjct: 7 LVLTEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKY--KGKAVFGRLNVDE 63
Query: 165 YKDLAEKYGVSGFPTLKFFPKG 186
+ +A+KY V PT F G
Sbjct: 64 NQKIADKYSVLNIPTTLIFVNG 85
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69
C C P Y+K+ +K K+V G+++ DE++ + KY V PT F G L
Sbjct: 33 CAPCHLYEPIYKKVAEKYK-GKAVF-GRLNVDENQKIADKYSVLNIPTTLIFVNGQL 87
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 111 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 170
++ E VL+ V+V+F+APWCG K +AP +++A ++ + V L+ D+ +A
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIAT 66
Query: 171 KYGVSGFPTLKFFPKGNK 188
+Y + PT+ FF G +
Sbjct: 67 QYNIRSIPTVLFFKNGER 84
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 117 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 174
LD + D V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEV 71
Query: 175 SGFPTLKFFPKGNKDGEEYGGGRD 198
PT +FF KG K GE G ++
Sbjct: 72 KCMPTFQFFKKGQKVGEFSGANKE 95
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
CG CK + P + L +K +V+ +VD D+ + + S+ V+ PT Q+F KG
Sbjct: 32 CGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQ 84
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 117 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 174
LD + D V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A KYG+
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVAPKYGI 71
Query: 175 SGFPTLKFFPKGNKDGEEYGG 195
G PTL F G + G
Sbjct: 72 RGIPTLLLFKNGEVAATKVGA 92
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK + P + L +K +V+ +VD D+ + + KYG++G PT+ F G +
Sbjct: 32 CGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLLLFKNGEVAAT 88
Query: 73 KYEGPRSTEALAEYVN 88
K G S L E+++
Sbjct: 89 KV-GALSKGQLKEFLD 103
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 182
VL +F+APWCG CK +AP E++ + D + + +D D+ ++ A KYGV PTL
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQ--EMGDKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 183 FPKGNKDGE 191
KDGE
Sbjct: 78 L----KDGE 82
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK +AP E+L + I K+D DE++ KYGV PT+ G +
Sbjct: 29 CGPCKMIAPVLEELDQEM--GDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVET 86
Query: 73 KYEGPRSTEALAEYVN 88
G + EAL E VN
Sbjct: 87 SV-GFKPKEALQELVN 101
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 55.8 bits (133), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
V+ L + NFD L + +V+F+A WC C LAP E++A + V L++D
Sbjct: 1 VIHLDSKNFDSF-LASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP---QVGFGKLNSD 56
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGNKDGE 191
+ D+A +YGV PT+ FF KDGE
Sbjct: 57 ENPDIAARYGVMSLPTVIFF----KDGE 80
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP 71
C C LAP E+L + + V GK++ DE+ + ++YGV PT+ +F G EP
Sbjct: 28 CAPCLILAPIIEELAEDYPQ---VGFGKLNSDENPDIAARYGVMSLPTVIFFKDG--EP 81
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 102 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 161
S+++ + + V D K V+V FY+P C +CK P +E+ A + V ++
Sbjct: 6 SSIIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYG--SSAVFGRIN 63
Query: 162 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 194
AEKYGV G PT KFF G E+ G
Sbjct: 64 IATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVG 96
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
C +CK P +E+ + S + G+++ + KYGVQG PT ++F G
Sbjct: 36 CPYCKAXEPYFEEYAKEY--GSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHG 88
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 117 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 174
LD + D V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEV 71
Query: 175 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 208
PT +FF KG K GE G + E + INE
Sbjct: 72 KCTPTFQFFKKGQKVGEFSGANK--EKLEATINE 103
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
CG CK + P + L +K +V+ +VD D+ + + S+ V+ PT Q+F KG
Sbjct: 32 CGPCKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASECEVKCTPTFQFFKKGQ 84
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 108 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 167
TA FD + + K V+V+FYA WCG K +AP EK + + D LD D+ D
Sbjct: 13 TASEFDSAIA-QDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQAD---FYKLDVDELGD 68
Query: 168 LAEKYGVSGFPTLKFFPKGNKDGEEYGGG 196
+A+K VS PTL F G + + G
Sbjct: 69 VAQKNEVSAMPTLLLFKNGKEVAKVVGAN 97
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG K +AP EK + +A K+D DE + K V PT+ F G
Sbjct: 36 CGPSKMIAPMIEKFSEQYPQAD---FYKLDVDELGDVAQKNEVSAMPTLLLFKNG 87
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K +V+FYA WCG CK +AP E+++ + + + ++ DK +LA +G+ G PT+
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQGIPTI 109
Query: 181 KFFP 184
F P
Sbjct: 110 WFVP 113
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 10 CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69
D CG CK +AP E+L + A + I KV+ D+ L +G+QG PTI WF
Sbjct: 60 ADWCGPCKMVAPILEELSKEY--AGKIYIYKVNVDKEPELARDFGIQGIPTI-WFVPMKG 116
Query: 70 EPKKYEGPRSTEALAEYVN 88
EP+ G S E L Y++
Sbjct: 117 EPQVNMGALSKEQLKGYID 135
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 117 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 174
LD + D V+V+F A WCG CK + P + ++ ++ +V+ +D + +D+A + V
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVNDCQDVASECEV 71
Query: 175 SGFPTLKFFPKGNKDGEEYGGGRD 198
PT +FF KG K GE G ++
Sbjct: 72 KCMPTFQFFKKGQKVGEFSGANKE 95
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
CG CK + P + L +K +V+ +VD ++ + + S+ V+ PT Q+F KG
Sbjct: 32 CGPCKMIKPFFHSLS---EKYSNVIFLEVDVNDCQDVASECEVKCMPTFQFFKKGQ 84
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
+V +T +FD V +S LV+F+A WCG CK +AP E++AA + + D++ LD D
Sbjct: 5 IVKVTDADFDSKV--ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADIL--KLDVD 60
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGN 187
+ A KY V PTL F G
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQ 84
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP- 71
CG CK +AP E+L A ++ +L K+D DE+ S +KY V PT+ F G +P
Sbjct: 31 CGSCKMIAPVLEELAADYEGKADIL--KLDVDENPSTAAKYEVMSIPTLIVFKDG--QPV 86
Query: 72 KKYEGPRSTEALAEYVN 88
K G + E LAE ++
Sbjct: 87 DKVVGFQPKENLAEVLD 103
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
+V +T +FD V +S LV+F+A WCG CK +AP E++AA + + D++ LD D
Sbjct: 6 IVKVTDADFDSKV--ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADIL--KLDVD 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGN 187
+ A KY V PTL F G
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQ 85
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP- 71
CG CK +AP E+L A ++ +L K+D DE+ S +KY V PT+ F G +P
Sbjct: 32 CGTCKMIAPVLEELAADYEGKADIL--KLDVDENPSTAAKYEVMSIPTLIVFKDG--QPV 87
Query: 72 KKYEGPRSTEALAEYVN 88
K G + E LAE ++
Sbjct: 88 DKVVGFQPKENLAEVLD 104
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 105 VVLTADNFDEI--VLDKSKD----VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 158
VV+ N DE + K+K+ V+++F A WCG C+ +AP + + A F V
Sbjct: 15 VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFL 71
Query: 159 NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 198
+D D+ K++AEKY V PT F G + + G +D
Sbjct: 72 KVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKD 111
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG C+ +AP + + F A + KVD DE K + KY V+ PT + G+ E
Sbjct: 48 CGPCRFIAPVFAEYAKKFPGA---VFLKVDVDELKEVAEKYNVEAMPTFLFIKDGA-EAD 103
Query: 73 KYEGPRSTEALAEYVNNEGGTNVKIAA 99
K G R + V + G T +A
Sbjct: 104 KVVGARKDDLQNTIVKHVGATAASASA 130
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 111 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 170
N +E + K +V+FYA WCG CK +AP +++A + + +V+ +D +K ++LA
Sbjct: 29 NPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEY--DGQIVIYKVDTEKEQELAG 86
Query: 171 KYGVSGFPTLKFFPKGNK 188
+G+ P++ F P K
Sbjct: 87 AFGIRSIPSILFIPMEGK 104
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 10 CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP 65
D CG CK +AP ++L + ++I KVD ++ + L +G++ P+I + P
Sbjct: 47 ADWCGPCKMVAPILDELAKEYDG--QIVIYKVDTEKEQELAGAFGIRSIPSILFIP 100
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
+V +T +FD V +S LV+F+A WCG CK +AP E++AA + + D++ LD D
Sbjct: 6 IVKVTDADFDSKV--ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADIL--KLDVD 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGN 187
+ A KY V PTL F G
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQ 85
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP- 71
CG CK +AP E+L A ++ +L K+D DE+ S +KY V PT+ F G +P
Sbjct: 32 CGPCKMIAPVLEELAADYEGKADIL--KLDVDENPSTAAKYEVMSIPTLIVFKDG--QPV 87
Query: 72 KKYEGPRSTEALAEYVN 88
K G + E LAE ++
Sbjct: 88 DKVVGFQPKENLAEVLD 104
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K V+V+F A WCG K + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDSQDVASESEVKSMPTF 77
Query: 181 KFFPKGNKDGEEYGGGRD 198
+FF KG K GE G ++
Sbjct: 78 QFFKKGQKVGEFSGANKE 95
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG K + P + L +K +V+ +VD D+ + + S+ V+ PT Q+F KG
Sbjct: 32 CGPSKMIKPFFHSLS---EKYSNVIFLEVDVDDSQDVASESEVKSMPTFQFFKKG 83
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 183
LV+F+APWCG C+ ++P E++A VV N+ D++ LA +YGV PTL F
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNV--DEHPGLAARYGVRSVPTLVLF 111
Query: 184 PKG 186
+G
Sbjct: 112 RRG 114
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
CG C+ ++P E+L + A + + KV+ DEH L ++YGV+ PT+ F +G+
Sbjct: 62 CGPCRLVSPILEEL--ARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGA 115
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 98 AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 157
A+ V+ +T F+ VL + VLV F+A WCG C+ ++P AA T D + V
Sbjct: 3 TAMSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLIN--LAANTYSDRLKV 60
Query: 158 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 207
L+ D +KY V G P L+ KG + + G + +SF++
Sbjct: 61 VKLEIDPNPTTVKKYKVEGVPALRLV-KGEQILDSTEGVISKDKLLSFLD 109
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG C+ ++P ++ V+ K++ D + + KY V+G P ++ KG
Sbjct: 37 CGPCQLMSPLINLAANTYSDRLKVV--KLEIDPNPTTVKKYKVEGVPALR-LVKGEQILD 93
Query: 73 KYEGPRSTEALAEYVNNEGGTN 94
EG S + L +++ N
Sbjct: 94 STEGVISKDKLLSFLDTHLNNN 115
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 86 YVNNEGGTNVKIAAVPSNVVVLTADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEK 144
Y+ GT ++ A+ V + D F IV K V+++ + WCG CK +AP YEK
Sbjct: 3 YLELALGTQ-EMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEK 61
Query: 145 VAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 198
+A + DV+ LD ++ K LA++ G+ PT K + + GE G D
Sbjct: 62 LAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 113
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYGVQGYPTIQWFPKGSL 69
CG CK +AP+YEKL + V+ K+DC+ E+K+L + G++ PT + + S+
Sbjct: 49 CGPCKAMAPKYEKLAEEY---LDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSV 103
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 92 GTNVKIAAVPSN-VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF- 149
G+++ PS+ + +L AD VL VEF+A WCGHC APT+ +A
Sbjct: 1 GSHMSALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVK 60
Query: 150 TLEDDVVVANLDADKYKDLA--EKYGVSGFPTLKFFPKGNKDG 190
+ +A LD + + A + + GFPT++FF +G
Sbjct: 61 AWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNG 103
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVL-IGKVDCDE--HKSLCSKYGVQGYPTIQWF 64
CGHC AP + L K + L + +DC E + ++C + + G+PT+++F
Sbjct: 42 CGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFF 96
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 117 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 174
LD + D V+V+F A WCG K + P + ++ ++ +V+ +D D +D+A + V
Sbjct: 26 LDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEV 82
Query: 175 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 208
PT +FF KG K GE G + E + INE
Sbjct: 83 KSMPTFQFFKKGQKVGEFSGANK--EKLEATINE 114
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
CG K + P + L +K +V+ +VD D+ + + S+ V+ PT Q+F KG
Sbjct: 43 CGPSKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKG 94
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 97 IAAVPSNVVVLTADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 155
+ A+ V + D F IV K V+++ + WCG CK +AP YEK+A + DV
Sbjct: 1 MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DV 57
Query: 156 VVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 198
+ LD ++ K LA++ G+ PT K + + GE G D
Sbjct: 58 IFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 101
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYGVQGYPTIQWFPKGSL 69
CG CK +AP+YEKL + V+ K+DC+ E+K+L + G++ PT + + S+
Sbjct: 37 CGPCKAMAPKYEKLAEEY---LDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSV 91
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 117 LDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV 174
LD + D V+V+F A WCG K + P + ++ ++ +V+ +D D +D+A + V
Sbjct: 15 LDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVASEAEV 71
Query: 175 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 208
PT +FF KG K GE G + E + INE
Sbjct: 72 KATPTFQFFKKGQKVGEFSGANK--EKLEATINE 103
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
CG K + P + L +K +V+ +VD D+ + + S+ V+ PT Q+F KG
Sbjct: 32 CGPAKMIKPFFHSLS---EKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKKGQ 84
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K V+++F A WCG C+ +AP + +A F + V +D D+ K +AE++ V PT
Sbjct: 35 KLVVIDFTASWCGPCRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTF 91
Query: 181 KFFPKGNKDGEEYGGGRD 198
F +G+ G ++
Sbjct: 92 LFMKEGDVKDRVVGAIKE 109
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69
CG C+ +AP + L F A + KVD DE K + ++ V+ PT + +G +
Sbjct: 46 CGPCRIMAPVFADLAKKFPNA---VFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDV 99
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 182
VL +F+APWCG K +AP E++ + D + + +D D+ ++ A KYGV PTL
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQ--EMGDKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 183 FPKGNKDGE 191
KDGE
Sbjct: 78 L----KDGE 82
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG K +AP E+L + I K+D DE++ KYGV PT+ G +
Sbjct: 29 CGPSKMIAPVLEELDQEM--GDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVET 86
Query: 73 KYEGPRSTEALAEYVN 88
G + EAL E VN
Sbjct: 87 SV-GFKPKEALQELVN 101
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA---AAFTLEDDVVVANL 160
+ +L AD+ VL S VEF+A WCGH APT++++A + ++ V +
Sbjct: 14 LTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDC 73
Query: 161 DADKYKDLAEKYGVSGFPTLKFFPKGNKDG 190
+ + ++ ++GFPT++FF K+G
Sbjct: 74 AEETNSAVCREFNIAGFPTVRFFQAFTKNG 103
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVL-IGKVDCDE--HKSLCSKYGVQGYPTIQWF 64
CGH AP +++L K + L + +DC E + ++C ++ + G+PT+++F
Sbjct: 42 CGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFF 96
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 182
VL +F+APWCG K +AP E++ + D + + +D D+ ++ A KYGV PTL
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQE--MGDKLKIVKIDVDENQETAGKYGVMSIPTLLV 77
Query: 183 FPKGNKDGE 191
KDGE
Sbjct: 78 L----KDGE 82
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG K +AP E+L + I K+D DE++ KYGV PT+ G +
Sbjct: 29 CGPSKMIAPVLEELDQEM--GDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVET 86
Query: 73 KYEGPRSTEALAEYVN 88
G + EAL E VN
Sbjct: 87 SV-GFKPKEALQELVN 101
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K +V+FYA WCG CK +AP E+++ + + + ++ DK +LA +G+ PT+
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQSIPTI 109
Query: 181 KFFP 184
F P
Sbjct: 110 WFVP 113
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 10 CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69
D CG CK +AP E+L + A + I KV+ D+ L +G+Q PTI WF
Sbjct: 60 ADWCGPCKMVAPILEELSKEY--AGKIYIYKVNVDKEPELARDFGIQSIPTI-WFVPMKG 116
Query: 70 EPKKYEGPRSTEALAEYVN 88
EP+ G S E L Y++
Sbjct: 117 EPQVNMGALSKEQLKGYID 135
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K V+V+F A WCG K + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKRMPTF 77
Query: 181 KFFPKGNKDGEEYGGGRD 198
+FF KG K GE G ++
Sbjct: 78 QFFKKGQKVGEFSGANKE 95
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS 68
CG K + P + L +K +V+ +VD D+ + + S+ V+ PT Q+F KG
Sbjct: 32 CGPSKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASECEVKRMPTFQFFKKGQ 84
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 114 EIVLDKSKD----VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA 169
E +L++ K+ VLV+F+A WCG C+ L +A A DV +D DK + A
Sbjct: 13 EALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEA---NKDVTFIKVDVDKNGNAA 69
Query: 170 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 203
+ YGVS P L FF K K+G E + L+ FV
Sbjct: 70 DAYGVSSIPAL-FFVK--KEGNEI---KTLDQFV 97
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
+V +T +FD V +S LV+F+A WCG K +AP E++AA + + D++ LD D
Sbjct: 6 IVKVTDADFDSKV--ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADIL--KLDVD 61
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGN 187
+ A KY V PTL F G
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQ 85
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP- 71
CG K +AP E+L A ++ +L K+D DE+ S +KY V PT+ F G +P
Sbjct: 32 CGTSKMIAPVLEELAADYEGKADIL--KLDVDENPSTAAKYEVMSIPTLIVFKDG--QPV 87
Query: 72 KKYEGPRSTEALAEYVN 88
K G + E LAE ++
Sbjct: 88 DKVVGFQPKENLAEVLD 104
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP 65
F +R HC +L P E L A + ++ K+DCD + + +++G++ PT+ F
Sbjct: 31 FYFWSERSQHCLQLTPILESLAAQYNG--QFILAKLDCDAEQMIAAQFGLRAIPTVYLFQ 88
Query: 66 KGSLEP-KKYEGPRSTEAL 83
G +P ++GP+ EA+
Sbjct: 89 NG--QPVDGFQGPQPEEAI 105
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 103 NVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 160
N+V + N + VL++S VL F++ HC L P E +AA + ++A L
Sbjct: 8 NIVNINESNLQQ-VLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYN--GQFILAKL 64
Query: 161 DADKYKDLAEKYGVSGFPTLKFFPKGN 187
D D + +A ++G+ PT+ F G
Sbjct: 65 DCDAEQMIAAQFGLRAIPTVYLFQNGQ 91
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 162
+ + ++ +FD+ VL S VLV+F+A WCG CK + P ++ F V VA ++
Sbjct: 3 HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA--GKVTVAKVNI 60
Query: 163 DKYKDLAEKYGVSGFPTLKFFPKG 186
D + Y V PTL G
Sbjct: 61 DDNPETPNAYQVRSIPTLMLVRDG 84
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG CK + P ++G F A V + KV+ D++ + Y V+ PT+ G + K
Sbjct: 32 CGPCKMIGPALGEIGKEF--AGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVIDK 89
Query: 73 K 73
K
Sbjct: 90 K 90
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP 65
F +R HC +L P E L A + ++ K+DCD + + +++G++ PT+ F
Sbjct: 31 FYFWSERSQHCLQLTPVLESLAAQYHG--QFILAKLDCDAEQXIAAQFGLRAIPTVYLFQ 88
Query: 66 KGSLEP-KKYEGPRSTEAL 83
G +P ++GP+ EA+
Sbjct: 89 NG--QPVDGFQGPQPEEAI 105
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 102 SNVVVLTADNFDEIVLDKSKD--VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 159
N+V + N + L++S VL F++ HC L P E +AA + ++A
Sbjct: 7 QNIVNINESNLQQ-TLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQY--HGQFILAK 63
Query: 160 LDADKYKDLAEKYGVSGFPTLKFFPKGN 187
LD D + +A ++G+ PT+ F G
Sbjct: 64 LDCDAEQXIAAQFGLRAIPTVYLFQNGQ 91
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 120 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 179
K ++V+F A WC CK +AP + ++A F +V +D D+ K +AE++ V PT
Sbjct: 26 QKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAMPT 82
Query: 180 LKFFPKGNKDGEEYGGGRD 198
F G + G +D
Sbjct: 83 FIFLKDGKLVDKTVGADKD 101
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69
C CK +AP + +L KK +V KVD DE K++ ++ V+ PT + G L
Sbjct: 38 CPPCKMIAPIFAELA---KKFPNVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKL 91
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
V+ TA+ D+++ D V ++F+APWCG C++ AP + + AA + V N +A+
Sbjct: 40 VINATAETLDKLLQDDLPXV-IDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAE 98
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD 215
L+ ++ + PT+ + G K + G F ++++E+ SRD
Sbjct: 99 PA--LSTRFRIRSIPTIXLYRNG-KXIDXLNGAVPKAPFDNWLDEQ--LSRD 145
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 99 AVPSNVVVLTADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 157
A+ V + D F IV K V+++ + WCG K +AP YEK+A + DV+
Sbjct: 2 AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIF 58
Query: 158 ANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 198
LD ++ K LA++ G+ PT K + + GE G D
Sbjct: 59 LKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 100
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYGVQGYPTIQWFPKGSL 69
CG K +AP+YEKL + V+ K+DC+ E+K+L + G++ PT + + S+
Sbjct: 36 CGPSKAMAPKYEKLAEEY---LDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSV 90
>pdb|1G7D|A Chain A, Nmr Structure Of Erp29 C-Domain
Length = 106
Score = 48.9 bits (115), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 225 GIVASLDALVKEFVAASGDE-KKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSD 283
G + + DAL +F+ AS E ++A+ + + G+ ++ + + YLK+ +D+G D
Sbjct: 2 GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGED 61
Query: 284 YAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 318
+ E+ R+ ++++ +S K +E NIL+ F
Sbjct: 62 FPASELARISKLIENKMSEGKKEELQRSLNILTAF 96
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVL-IGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP 71
C HC LAP + + K+ +L IG V+C + + LC GV YP++ F G +
Sbjct: 126 CSHCHDLAPTWREFA---KEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSG-MAA 181
Query: 72 KKYEGPRSTEALAEY 86
KY G RS E+L +
Sbjct: 182 VKYNGDRSKESLVAF 196
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
++ L FD V + + V FY+P C HC +LAPT+ + A + N D
Sbjct: 99 IITLERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDD 157
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 205
+ L GV+ +P+L F G +Y G R E V+F
Sbjct: 158 RM--LCRMKGVNSYPSLFIFRSGMA-AVKYNGDRSKESLVAF 196
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K V+++F A WCG + +AP + +A F + V +D D+ K +AE++ V PT
Sbjct: 38 KLVVIDFTASWCGPSRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTF 94
Query: 181 KFFPKGN 187
F +G+
Sbjct: 95 LFMKEGD 101
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69
CG + +AP + L F A + KVD DE K + ++ V+ PT + +G +
Sbjct: 49 CGPSRIMAPVFADLAKKFPNA---VFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDV 102
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163
+V +T +FD V +S LV+F+A CG CK +AP E++AA + + D++ LD D
Sbjct: 5 IVKVTDADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADIL--KLDVD 60
Query: 164 KYKDLAEKYGVSGFPTLKFFPKGN 187
+ A KY V PTL F G
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQ 84
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP- 71
CG CK +AP E+L A ++ +L K+D DE+ S +KY V PT+ F G +P
Sbjct: 31 CGPCKMIAPVLEELAADYEGKADIL--KLDVDENPSTAAKYEVMSIPTLIVFKDG--QPV 86
Query: 72 KKYEGPRSTEALAEYVN 88
K G + E LAE ++
Sbjct: 87 DKVVGFQPKENLAEVLD 103
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K V+V+F A W G K + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWSGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCMPTF 77
Query: 181 KFFPKGNKDGEEYGGGRD 198
+FF KG K GE G ++
Sbjct: 78 QFFKKGQKVGEFSGANKE 95
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 14 GHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67
G K + P + L +K +V+ +VD D+ + + S+ V+ PT Q+F KG
Sbjct: 33 GPSKMIKPFFHSLS---EKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKG 83
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 182
V+V+F A WCG C+ +AP + +A +V+ +D D+ K +A + + PT F
Sbjct: 41 VVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQAMPTFMF 97
Query: 183 FPKGNKDGEEYGGGRD 198
+G + G +D
Sbjct: 98 LKEGKILDKVVGAKKD 113
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69
CG C+ +AP + L KK +VL KVD DE KS+ S + +Q PT + +G +
Sbjct: 50 CGPCRFIAPFFADLA---KKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKI 103
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 108 TADNFDEIVLDKSKDVLV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 166
+A F+E++ K+K +LV F+APW C + ++A V L+A+
Sbjct: 25 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVKLEAEGVP 81
Query: 167 DLAEKYGVSGFPTLKFFPKGNK 188
+++EKY +S PT FF K
Sbjct: 82 EVSEKYEISSVPTFLFFKNSQK 103
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 116 VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 175
++ ++ ++++FYA WCG CK + P K+ A+ DV D D+ D+A++ V+
Sbjct: 26 LIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP---DVRFVKCDVDESPDIAKECEVT 82
Query: 176 GFPTLKFFPKGNKDGEEYG 194
PT KDG+ G
Sbjct: 83 AMPTFVL----GKDGQLIG 97
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 60
CG CK + P KL ++ + V K D DE + + V PT
Sbjct: 42 CGPCKMMQPHLTKLIQAYPDVRFV---KCDVDESPDIAKECEVTAMPT 86
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 108 TADNFDEIVLDKSKDVLV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 166
+A F+E++ K+K +LV F+APW C + ++A V L+A+
Sbjct: 19 SAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP---QVSFVKLEAEGVP 75
Query: 167 DLAEKYGVSGFPTLKFFPKGNK 188
+++EKY +S PT FF K
Sbjct: 76 EVSEKYEISSVPTFLFFKNSQK 97
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K V+V+F A WCG CK + P + ++ ++ +V+ +D D +D+A + V PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDXQDVASEXEVKCMPTF 77
Query: 181 KFFPKGNKDGEEYGGGRD 198
+FF KG K GE G ++
Sbjct: 78 QFFKKGQKVGEFSGANKE 95
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 105 VVLTADNFDEIVLDKSKD---VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 161
++ T + +D+ + + S+D VL F A WCG CK +AP Y +++ + ++ +D
Sbjct: 28 LITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYP---SLMFLVID 84
Query: 162 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 197
D+ D + + + PT F G + + G +
Sbjct: 85 VDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANK 120
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 60
CG CK++AP Y +L ++ S++ +D DE + + ++ PT
Sbjct: 58 CGPCKQIAPYYIELSENY---PSLMFLVIDVDELSDFSASWEIKATPT 102
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 44.7 bits (104), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 107 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 166
L+ +F V +++ F WC CK + PT+E++A+ +E D+ A +DA+ +
Sbjct: 4 LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMAS--QMEGDIRFAYMDAEDAE 61
Query: 167 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 207
+ + P+L F G E + G + D +IN
Sbjct: 62 KTMAELNIRTLPSLALFVDGMIR-EVFSGTMNKSDLRYWIN 101
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 113 DEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY 172
+E+ DK +VEF+A W C++ AP Y ++ + + +D +Y D++ +Y
Sbjct: 19 EELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCT-GLNFGKVDVGRYTDVSTRY 77
Query: 173 GVSGFPTLKFFP 184
VS P K P
Sbjct: 78 KVSTSPLTKQLP 89
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 98 AAVPSNVVVLTADNFDEIVLDKSKDVLV--EFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 155
A PS V V + + F I+ S+D+L F A WCG CK + EK+A F V
Sbjct: 16 ARYPSVVDVYSVEQFRNIM---SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TV 69
Query: 156 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG 195
A +DAD ++ K V PT G G G
Sbjct: 70 KFAKVDADNNSEIVSKCRVLQLPTFIIARSGKMLGHVIGA 109
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPT 60
CG CK + EK+ F K KVD D + + SK V PT
Sbjct: 49 CGPCKTIERPMEKIAYEFPTVK---FAKVDADNNSEIVSKCRVLQLPT 93
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 108 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVV-ANLDADK 164
T D ++ +++ K K V+++ YA WC CK T+ L D V++ AN+ A+
Sbjct: 18 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND 77
Query: 165 YKDLA--EKYGVSGFPTLKFFPKGNKDGEEYGGGR-----DLEDFVSFINEK 209
+D+A + V G PT+ FF + G+E+ R D E F + + ++
Sbjct: 78 AQDVALLKHLNVLGLPTILFF---DGQGQEHPQARVTGFMDAETFSAHLRDR 126
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 108 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVV-ANLDADK 164
T D ++ +++ K K V+++ YA WC CK T+ L D V++ AN+ A+
Sbjct: 15 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND 74
Query: 165 YKDLA--EKYGVSGFPTLKFFPKGNKDGEEYGGGR-----DLEDFVSFINEK 209
+D+A + V G PT+ FF + G+E+ R D E F + + ++
Sbjct: 75 AQDVALLKHLNVLGLPTILFF---DGQGQEHPQARVTGFMDAETFSAHLRDR 123
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 105 VVLTADNFDEIVLDKSKD---VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 161
++ T + +D+ + + S+D VL F A WCG + +AP Y +++ + ++ +D
Sbjct: 28 LITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP---SLMFLVID 84
Query: 162 ADKYKDLAEKYGVSGFPTLKFFPKGNK 188
D+ D + + + PT F G +
Sbjct: 85 VDELSDFSASWEIKATPTFFFLRDGQQ 111
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD----VVVANLDADKYKDLAEKYG 173
++ K ++V+F A WCG CK +AP +E TL +D V+ +D D +AE G
Sbjct: 22 EEHKPIVVDFTATWCGPCKMIAPLFE------TLSNDYAGKVIFLKVDVDAVAAVAEAAG 75
Query: 174 VSGFPTLKFFPKGNKDGEEYGGGRD 198
++ PT + G K + G +D
Sbjct: 76 ITAMPTFHVYKDGVKADDLVGASQD 100
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 178
+ K VLV F+A WC +C++ P+ +++ +F D VV+A + K EKY +
Sbjct: 40 RGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLA---VNVEKRFPEKYRRAPV- 95
Query: 179 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD 215
+ F ++ G L D +FI ++ G R
Sbjct: 96 SFNFLSDATGQVQQRYGANRLPD--TFIVDRKGIIRQ 130
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD----VVVANLDADKYKDLAEKYG 173
++ K ++V F A WCG CK +AP +E TL +D V+ +D D +AE G
Sbjct: 22 EEHKPIVVAFTATWCGPCKMIAPLFE------TLSNDYAGKVIFLKVDVDAVAAVAEAAG 75
Query: 174 VSGFPTLKFFPKGNKDGEEYGGGRD 198
++ PT + G K + G +D
Sbjct: 76 ITAMPTFHVYKDGVKADDLVGASQD 100
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 133 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 171
GH +APT E VA TLED+V+ A LD D+ ++L E
Sbjct: 247 GHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREH 285
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 133 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 171
GH +APT E VA TLED+V+ A LD D+ ++L E
Sbjct: 247 GHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREH 285
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 133 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 171
GH +APT E VA TLED+V+ A LD D+ ++L E
Sbjct: 247 GHSCIVAPTGEIVALTTTLEDEVITAALDLDRCRELREH 285
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-ADKYKDLAEKYGVSGFPT 179
K ++ F+APWC C+ AP +VAA+ V VA LD ++ KY V F
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 85
Query: 180 L 180
L
Sbjct: 86 L 86
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-ADKYKDLAEKYGVSGFPT 179
K ++ F+APWC C+ AP +VAA+ V VA LD ++ KY V F
Sbjct: 40 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 99
Query: 180 L 180
L
Sbjct: 100 L 100
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 108 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVV-ANLDADK 164
T D ++ +++ K K V+++ YA WC K T+ L D V++ AN+ A+
Sbjct: 18 TVDELNQALVEAKGKPVMLDLYADWCVASKEFEKYTFSDPQVQKALADTVLLQANVTAND 77
Query: 165 YKDLA--EKYGVSGFPTLKFFPKGNKDGEEYGGGR-----DLEDFVSFINEK 209
+D+A + V G PT+ FF + G+E+ R D E F + + ++
Sbjct: 78 AQDVALLKHLNVLGLPTILFF---DGQGQEHPQARVTGFMDAETFSAHLRDR 126
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 102 SNVVVLTADNFDEI-VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD------ 154
S+VV L+ D+F + + +V FY CG C+ A T+ K A +E
Sbjct: 23 SSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQI 82
Query: 155 VVVANLDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFIN 207
A ++ DL KY ++ P L FF P+ + E G LE V+F N
Sbjct: 83 ATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLE-HVAFEN 135
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 11 DRCGHCKKLAPEYEKLGASFK--KAKSVL----IGKVDCDEHKSLCSKYGVQGYPTIQWF 64
D CG C++ A + K K K L V+C LC KY + P + +F
Sbjct: 52 DGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFF 111
Query: 65 -PKGSLEPKKYEGPRSTEALA 84
P+ S + G S E +A
Sbjct: 112 YPRDSCRSNEECGTSSLEHVA 132
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 122 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 181
D +V F+ C HCKN+ +K A V ++++D++ +L ++ G PTL
Sbjct: 21 DAIVFFHKNLCPHCKNMEKVLDKFGAR---APQVAISSVDSEARPELMKELGFERVPTLV 77
Query: 182 FFPKG 186
F G
Sbjct: 78 FIRDG 82
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
C HCK + +K GA +A V I VD + L + G + PT+ + G + K
Sbjct: 31 CPHCKNMEKVLDKFGA---RAPQVAISSVDSEARPELMKELGFERVPTLVFIRDGKVA-K 86
Query: 73 KYEG---PRSTEAL 83
+ G PR +AL
Sbjct: 87 VFSGIMNPRELQAL 100
>pdb|2AYT|A Chain A, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
pdb|2AYT|B Chain B, The Crystal Structure Of A Protein Disulfide
Oxidoreductase From Aquifex Aeolicus
Length = 237
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 116 VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN-LDADKYKDLAEKYGV 174
V+D ++ V F CG+C P+ +A F L +D + + +DA + +DLAE++ V
Sbjct: 133 VVDIPIEIWV-FVTTSCGYC----PSAAVMAWDFALANDYITSKVIDASENQDLAEQFQV 187
Query: 175 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 206
G P + NK E+ G + F+ +I
Sbjct: 188 VGVPKIVI----NKGVAEFVGAQPENAFLGYI 215
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 133 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 171
GH +APT E VA TLED+V+ A +D D+ ++L E
Sbjct: 246 GHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREH 284
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 133 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK 171
GH +APT E VA TLED+V+ A +D D+ ++L E
Sbjct: 246 GHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREH 284
>pdb|2YWM|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
pdb|2YWM|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Aquifex Aeolicus
Length = 229
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 116 VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN-LDADKYKDLAEKYGV 174
V+D ++ V F CG+C P+ A F L +D + + +DA + +DLAE++ V
Sbjct: 133 VVDIPIEIWV-FVTTSCGYC----PSAAVXAWDFALANDYITSKVIDASENQDLAEQFQV 187
Query: 175 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 206
G P + NK E+ G + F+ +I
Sbjct: 188 VGVPKIVI----NKGVAEFVGAQPENAFLGYI 215
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEK---VAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF 177
K + V+ + WCG CK L+ K VA F + +++ + +L +KYGV +
Sbjct: 28 KLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAY 87
Query: 178 PTLKFFPKGNKDGE 191
PTL F N GE
Sbjct: 88 PTLLFI---NSSGE 98
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
C C + E +KL + K + + KVD D+++SL K+ V+ PTI ++ +
Sbjct: 54 CQACTMQSTEMDKLQKYY--GKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLAR 111
Query: 73 KYEGPRSTEALA 84
K S + +A
Sbjct: 112 KDHFVSSNDLIA 123
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 178
K+ +++ F+A WC C + +K+ + + + +D DK + LA K+ V P
Sbjct: 41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG--KRIYLLKVDLDKNESLARKFSVKSLP 98
Query: 179 TL 180
T+
Sbjct: 99 TI 100
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDA---DKYKDLAEKYGVSGFP 178
V ++F+A WCG C+ P + A + + VV NLDA D K LA+ V
Sbjct: 31 VYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQ---VPAEF 87
Query: 179 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFV 238
T+ F PKG YG F+ R+GK L A +AL ++ +
Sbjct: 88 TVAFDPKGQTP-RLYGVKGXPTSFL--------IDRNGKVLLQHVGFRPADKEALEQQIL 138
Query: 239 AASG 242
AA G
Sbjct: 139 AALG 142
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180
K +++ F+ W CK L +E ++ + +V ++DAD+ +++E + +S P
Sbjct: 22 KLIVLYFHTSWAEPCKALKQVFEAISNEPS-NSNVSFLSIDADENSEISELFEISAVPYF 80
Query: 181 KFFPKGNKDGEEYGGGRDLEDFVSFI 206
KG E G D +++VS +
Sbjct: 81 IIIHKGTILKE--LSGADPKEYVSLL 104
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 105 VVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA 148
L+ FD L + K ++ F+ PWC C AP+ +VAAA
Sbjct: 10 TTLSGAPFDGASL-QGKPAVLWFWTPWCPFCNAEAPSLSQVAAA 52
>pdb|1B9N|A Chain A, Regulator From Escherichia Coli
pdb|1B9N|B Chain B, Regulator From Escherichia Coli
Length = 265
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 51 SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTAD 110
S++ +Q QWF G++ + ++ + + + +G T +K+A +TA
Sbjct: 122 SRFSLQTSARNQWF--GTITARDHD---DVQQHVDVLLADGKTRLKVA--------ITAQ 168
Query: 111 NFDEIVLDKSKDVLVEFYAPWCG 133
+ + LD+ K+VL+ APW G
Sbjct: 169 SGARLGLDEGKEVLILLKAPWVG 191
>pdb|1O7L|A Chain A, Molybdate-Activated Form Of Mode From Escherichia Coli
pdb|1O7L|B Chain B, Molybdate-Activated Form Of Mode From Escherichia Coli
pdb|1O7L|C Chain C, Molybdate-Activated Form Of Mode From Escherichia Coli
pdb|1O7L|D Chain D, Molybdate-Activated Form Of Mode From Escherichia Coli
Length = 262
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 51 SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTAD 110
S++ +Q QWF G++ + ++ + + + +G T +K+A +TA
Sbjct: 119 SRFSLQTSARNQWF--GTITARDHD---DVQQHVDVLLADGKTRLKVA--------ITAQ 165
Query: 111 NFDEIVLDKSKDVLVEFYAPWCG 133
+ + LD+ K+VL+ APW G
Sbjct: 166 SGARLGLDEGKEVLILLKAPWVG 188
>pdb|1B9M|A Chain A, Regulator From Escherichia Coli
pdb|1B9M|B Chain B, Regulator From Escherichia Coli
Length = 265
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 51 SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTAD 110
S++ +Q QWF G++ + ++ + + + +G T +K+A +TA
Sbjct: 122 SRFSLQTSARNQWF--GTITARDHD---DVQQHVDVLLADGKTRLKVA--------ITAQ 168
Query: 111 NFDEIVLDKSKDVLVEFYAPWCG 133
+ + LD+ K+VL+ APW G
Sbjct: 169 SGARLGLDEGKEVLILLKAPWVG 191
>pdb|3QD9|A Chain A, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|B Chain B, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|C Chain C, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
pdb|3QD9|D Chain D, C72sC353S MUTANT OF TRYPANOSOMA BRUCEI QSOX CONTAINING AN
INTERDOMAIN Disulfide
Length = 470
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 102 SNVVVLTADNFDEI-VLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD------ 154
S+VV L+ D+F + + +V FY CG + A T+ K A +E
Sbjct: 23 SSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGASRRYASTFSKFAGGLKVEHGKDALQI 82
Query: 155 VVVANLDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFIN 207
A ++ DL KY ++ P L FF P+ + E G LE V+F N
Sbjct: 83 ATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLE-HVAFEN 135
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 11 DRCGHCKKLAPEYEKLGASFK--KAKSVL----IGKVDCDEHKSLCSKYGVQGYPTIQWF 64
D CG ++ A + K K K L V+C LC KY + P + +F
Sbjct: 52 DGCGASRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFF 111
Query: 65 -PKGSLEPKKYEGPRSTEALA 84
P+ S + G S E +A
Sbjct: 112 YPRDSCRSNEECGTSSLEHVA 132
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 100 VPSNVVVL-TADNFD-EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA--AAFTLEDDV 155
VP + L TADN + L K K L++F+A WC C + EK A A F+ + +
Sbjct: 2 VPHTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLI 61
Query: 156 VVAN---LDADKYKDLAEKYGVSGFPTL 180
VA+ L K D + Y +P L
Sbjct: 62 TVASPGFLHEKKDGDFQKWYAGLNYPKL 89
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 100 VPSNVVVL-TADNFD-EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA--AAFTLEDDV 155
VP + L TADN + L K K L++F+A WC C + EK A A F+ + +
Sbjct: 1 VPHTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLI 60
Query: 156 VVAN---LDADKYKDLAEKYGVSGFPTL 180
VA+ L K D + Y +P L
Sbjct: 61 TVASPGFLHEKKDGDFQKWYAGLNYPKL 88
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/71 (18%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 178
++ ++++F A WC C + ++ + V + ++D D + L +++ + P
Sbjct: 39 QNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYY----VTLVDIDVDIHPKLNDQHNIKALP 94
Query: 179 TLKFFPKGNKD 189
T +F+ N +
Sbjct: 95 TFEFYFNLNNE 105
>pdb|3KP8|A Chain A, The Thioredoxin-Like Domain Of A Vkor Homolog From
Synechococcus Sp
Length = 106
Score = 32.0 bits (71), Expect = 0.46, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 20/78 (25%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH------KSLCSKYGVQGYPTIQWFPK 66
C HC+ + E GA+F + + V+C + C++ G+ YPT W
Sbjct: 24 CPHCQD---QKELFGAAFDQ-----VPYVECSPNGPGTPQAQECTEAGITSYPT--WIIN 73
Query: 67 GSLEPKKYEGPRSTEALA 84
G + Y G RS EALA
Sbjct: 74 G----RTYTGVRSLEALA 87
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 120 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 179
S+ +V+F CG C +AP + ++ + V +D + + A +S PT
Sbjct: 21 SRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPT 77
Query: 180 LKFF 183
+FF
Sbjct: 78 FQFF 81
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPK 72
CG C ++AP + + + +A + +VD + + + + PT Q+F + +
Sbjct: 33 CGPCLRIAPAFSSMSNKYPQA---VFLEVDVHQCQGTAATNNISATPTFQFF-RNKVRID 88
Query: 73 KYEG 76
+Y+G
Sbjct: 89 QYQG 92
>pdb|3KP9|A Chain A, Structure Of A Bacterial Homolog Of Vitamin K Epoxide
Reductase
Length = 291
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 20/78 (25%)
Query: 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE------HKSLCSKYGVQGYPTIQWFPK 66
C HC+ + E GA+F + + V+C C++ G+ YPT W
Sbjct: 209 CPHCQD---QKELFGAAFDQ-----VPYVECSPNGPGTPQAQECTEAGITSYPT--WIIN 258
Query: 67 GSLEPKKYEGPRSTEALA 84
G + Y G RS EALA
Sbjct: 259 G----RTYTGVRSLEALA 272
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKY--KDLAEKYGVS 175
K K V + F+ WC HCK P F + ++V N+ K + + YGV+
Sbjct: 25 KGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN 84
Query: 176 GFPTL 180
FP +
Sbjct: 85 -FPVV 88
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 119 KSKDVLVEFYAPWCGHCKNLAPTYEK 144
+ K V+++F A WCG C+ P EK
Sbjct: 32 RGKVVMLQFTASWCGVCRKEMPFIEK 57
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 96 KIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYE 143
K AVP+ + T + D + +K + ++ F+ WC CK P ++
Sbjct: 10 KQPAVPAVFLXKTIEGEDISIPNKGQKTILHFWTSWCPPCKKELPQFQ 57
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKY--KDLAEKYGVS 175
K K V + F+ WC HCK P F + ++V N+ K + + YGV+
Sbjct: 22 KGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVN 81
Query: 176 GFPTL 180
FP +
Sbjct: 82 -FPVV 85
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ 62
L+ +K +R P Y+ A+ +A + I +D K + +K G TI
Sbjct: 87 LSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSIDDLNGKVIAAKTGTA---TID 143
Query: 63 WFPKGSLEPKK-------------YEGPRSTEALAE------YVNNEGGTNVKIAAVP 101
W K L+PK+ E R A+ + +VNNEG VK+A P
Sbjct: 144 WI-KAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAP 200
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 160
++V + WCG CK L P + + L + V+ NL
Sbjct: 42 LMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNL 79
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 160
++V + WCG CK L P + + L + V+ NL
Sbjct: 49 LMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNL 86
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAA 148
K + V+V F+A WC C+ P+ ++ AA
Sbjct: 27 KGQVVIVNFWATWCPPCREEIPSXXRLNAA 56
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 108 TADNFD-EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA--AAFTLEDDVVVAN 159
TADN + L K K L++F+A WC C + EK A A F+ + + VA+
Sbjct: 25 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVAS 79
>pdb|1H9R|A Chain A, Tungstate Bound Complex Dimop Domain Of Mode From E.Coli
pdb|1H9R|B Chain B, Tungstate Bound Complex Dimop Domain Of Mode From E.Coli
pdb|1H9S|A Chain A, Molybdate Bound Complex Of Dimop Domain Of Mode From
E.Coli
Length = 140
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 62 QWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSK 121
QWF G++ + ++ + + + +G T +K+A +TA + + LD+ K
Sbjct: 8 QWF--GTITARDHD---DVQQHVDVLLADGKTRLKVA--------ITAQSGARLGLDEGK 54
Query: 122 DVLVEFYAPWCG 133
+VL+ APW G
Sbjct: 55 EVLILLKAPWVG 66
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 131 WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG 190
+C K L ++ + E + + D + K+LAEKY + P G G
Sbjct: 37 YCDQLKQLVQELSELTDKLSYE----IVDFDTPEGKELAEKYRIDRAPATTITQDGKDFG 92
Query: 191 EEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFV 238
Y G +F +F+ + S+ + + V+ +D V+ +
Sbjct: 93 VRYFGIPAGHEFAAFLEDIVDVSKGDTDLMQDSKEEVSKIDKDVRILI 140
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 25/114 (21%)
Query: 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF---------------------TLEDDVVV 157
K K VLV+F+ C C+ P K AF +E+D
Sbjct: 28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSY 87
Query: 158 AN---LDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFIN 207
N L D KD+ E Y + GFP + P+G +E G F+N
Sbjct: 88 WNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVN 141
>pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
Length = 1224
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 81 EALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCK 136
E L EY++ E ++ IA P ++ A+ +++ +D +K + V +A HC+
Sbjct: 687 EGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCE 742
>pdb|1H9S|B Chain B, Molybdate Bound Complex Of Dimop Domain Of Mode From
E.Coli
Length = 140
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 62 QWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSK 121
QWF G++ + ++ + + + +G T +K+A +TA + + LD+ K
Sbjct: 8 QWF--GTITARDHD---DVQQHVDVLLADGKTRLKVA--------ITAQSGARLGLDEGK 54
Query: 122 DVLVEFYAPWCG 133
+VL+ APW G
Sbjct: 55 EVLILLKAPWVG 66
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 124 LVEFYAPWCGHCKNLAPTYEKVAAAF 149
++EF+ +C HC +L P K A +F
Sbjct: 45 VLEFFGYFCPHCAHLEPVLSKHAKSF 70
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 160
D +K + + FY +CG +L + VAA + +VVV +L
Sbjct: 134 DNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDL 176
>pdb|3HSK|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
pdb|3HSK|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
With Nadp From Candida Albicans
Length = 381
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 151 LEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE-- 208
LE DVV + LDAD D+ + + +G + + + Y +D+ V +N
Sbjct: 92 LECDVVFSGLDADVAGDIEKSFVEAGLAVV-------SNAKNYRREKDVPLVVPIVNPEH 144
Query: 209 --------KCGTSRDGK--GQLT-----STAGIVASLDALVKEF 237
K S+ GK G + STAG+VA L LV++F
Sbjct: 145 IDVVENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLKPLVEKF 188
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 170
K K + ++ +A WCG C+ P +++ + + D+ +L DK K E
Sbjct: 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGK-DIHFVSLSCDKNKKAWE 79
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 30/98 (30%)
Query: 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL----------DAD----- 163
K K V ++F+A WC C P +++A DD VV + +AD
Sbjct: 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAG--DDYVVLTVVSPGHKGEQSEADFKNWY 78
Query: 164 ---KYKDLA----------EKYGVSGFPTLKFFPKGNK 188
YK+L E YGV +PT F K K
Sbjct: 79 KGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGK 116
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 124 LVEFYAPWCGHCKNLAPTYEKVAAAF 149
++EF+ +C HC +L P K A +F
Sbjct: 28 VLEFFGYFCPHCAHLEPVLSKHAKSF 53
>pdb|3DVW|A Chain A, Crystal Structure Of Reduced Dsba1 From Neisseria
Meningitidis
Length = 193
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 124 LVEFYAPWCGHCKNLAPTYEKVAAAF 149
++EF+ +C HC +L P K A +F
Sbjct: 28 VLEFFGYFCPHCAHLEPVLSKHAKSF 53
>pdb|2L57|A Chain A, Solution Structure Of An Uncharacterized Thioredoin-Like
Protein From Clostridium Perfringens
Length = 126
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 183
++ F C +C + V+ + ++ A L+ +K DLA KY + PT F
Sbjct: 30 IIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFL 89
Query: 184 PK-GNK 188
K GNK
Sbjct: 90 DKEGNK 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,041,930
Number of Sequences: 62578
Number of extensions: 455534
Number of successful extensions: 1977
Number of sequences better than 100.0: 203
Number of HSP's better than 100.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1392
Number of HSP's gapped (non-prelim): 368
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)