Query 020926
Match_columns 319
No_of_seqs 364 out of 3063
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:15:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1.7E-42 3.7E-47 308.8 18.1 206 3-211 44-474 (493)
2 PTZ00102 disulphide isomerase; 100.0 2.7E-33 5.9E-38 261.3 23.1 208 3-212 51-467 (477)
3 KOG0191 Thioredoxin/protein di 100.0 1.8E-32 3.9E-37 247.4 21.4 207 3-213 49-255 (383)
4 TIGR01130 ER_PDI_fam protein d 100.0 6.7E-30 1.5E-34 237.7 22.2 207 3-211 20-455 (462)
5 TIGR02187 GlrX_arch Glutaredox 100.0 3.5E-30 7.5E-35 214.4 16.6 189 4-208 22-214 (215)
6 KOG4277 Uncharacterized conser 99.9 5.3E-23 1.1E-27 169.4 13.6 182 3-209 45-230 (468)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.8E-22 3.9E-27 149.3 11.0 103 101-206 8-113 (113)
8 PF07749 ERp29: Endoplasmic re 99.9 1E-22 2.2E-27 145.0 9.4 95 225-319 1-95 (95)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 4.9E-22 1.1E-26 146.5 10.7 102 103-206 2-104 (104)
10 KOG0910 Thioredoxin-like prote 99.9 3.4E-22 7.3E-27 150.3 9.8 105 103-210 44-148 (150)
11 cd02996 PDI_a_ERp44 PDIa famil 99.9 6.4E-22 1.4E-26 146.8 10.9 103 103-206 2-108 (108)
12 cd03065 PDI_b_Calsequestrin_N 99.9 2.3E-21 5E-26 144.2 11.6 107 102-210 9-119 (120)
13 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 2.2E-21 4.8E-26 142.1 11.3 99 103-205 2-100 (101)
14 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.2E-21 2.6E-26 144.9 8.5 82 3-87 31-113 (113)
15 PF00085 Thioredoxin: Thioredo 99.9 5.5E-21 1.2E-25 140.5 12.1 103 104-209 1-103 (103)
16 KOG0190 Protein disulfide isom 99.9 5.8E-22 1.2E-26 177.7 7.7 117 100-218 23-140 (493)
17 cd00238 ERp29c ERp29 and ERp38 99.8 6.9E-21 1.5E-25 134.3 9.3 92 227-318 1-93 (93)
18 KOG0912 Thiol-disulfide isomer 99.8 2.1E-20 4.6E-25 154.3 13.4 189 3-212 15-210 (375)
19 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.7E-20 3.6E-25 137.8 10.0 102 103-209 2-115 (116)
20 cd02994 PDI_a_TMX PDIa family, 99.8 3.6E-20 7.8E-25 135.7 11.3 100 103-208 2-101 (101)
21 cd03002 PDI_a_MPD1_like PDI fa 99.8 2.9E-20 6.3E-25 138.2 11.0 101 104-206 2-108 (109)
22 KOG0191 Thioredoxin/protein di 99.8 1.7E-20 3.7E-25 169.6 11.4 183 4-187 165-355 (383)
23 cd02993 PDI_a_APS_reductase PD 99.8 4.6E-20 1E-24 136.9 10.6 103 103-206 2-109 (109)
24 cd02996 PDI_a_ERp44 PDIa famil 99.8 2.8E-20 6E-25 138.0 9.1 85 3-87 20-108 (108)
25 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 4.2E-20 9.2E-25 135.3 9.7 81 3-86 20-100 (101)
26 cd03001 PDI_a_P5 PDIa family, 99.8 9E-20 2E-24 134.1 11.3 101 104-206 2-102 (103)
27 COG3118 Thioredoxin domain-con 99.8 3.2E-19 6.9E-24 148.5 15.1 108 102-212 23-132 (304)
28 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 4.1E-20 8.8E-25 136.2 8.8 83 3-87 21-104 (104)
29 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 1.1E-19 2.4E-24 133.9 10.8 102 104-206 2-104 (104)
30 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.2E-19 2.6E-24 133.9 10.9 103 104-206 2-105 (105)
31 PTZ00443 Thioredoxin domain-co 99.8 7.3E-19 1.6E-23 145.1 16.5 110 101-213 29-142 (224)
32 cd02999 PDI_a_ERp44_like PDIa 99.8 4.7E-20 1E-24 134.2 7.9 80 3-87 20-100 (100)
33 TIGR01126 pdi_dom protein disu 99.8 2.2E-19 4.8E-24 131.8 10.6 101 107-209 1-101 (102)
34 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.9E-19 4.1E-24 132.1 10.1 100 104-206 2-102 (102)
35 cd02999 PDI_a_ERp44_like PDIa 99.8 2E-19 4.4E-24 130.9 9.4 84 118-206 16-100 (100)
36 cd02963 TRX_DnaJ TRX domain, D 99.8 2.1E-19 4.6E-24 133.6 9.6 101 106-208 8-110 (111)
37 PRK09381 trxA thioredoxin; Pro 99.8 7.3E-19 1.6E-23 130.6 12.2 106 102-210 3-108 (109)
38 PHA02278 thioredoxin-like prot 99.8 4.5E-19 9.8E-24 129.0 9.7 93 109-205 4-100 (103)
39 cd02994 PDI_a_TMX PDIa family, 99.8 3.9E-19 8.5E-24 130.2 9.2 83 4-89 19-101 (101)
40 cd02954 DIM1 Dim1 family; Dim1 99.8 2.8E-19 6.2E-24 130.8 8.1 85 109-196 2-87 (114)
41 KOG0910 Thioredoxin-like prote 99.8 2E-19 4.3E-24 135.4 7.4 86 3-91 63-148 (150)
42 cd02997 PDI_a_PDIR PDIa family 99.8 7.4E-19 1.6E-23 129.4 10.4 101 104-206 2-104 (104)
43 cd02956 ybbN ybbN protein fami 99.8 1E-18 2.2E-23 126.7 11.0 94 110-206 1-95 (96)
44 PF00085 Thioredoxin: Thioredo 99.8 3.2E-19 6.9E-24 131.1 8.2 85 3-90 19-103 (103)
45 PTZ00062 glutaredoxin; Provisi 99.8 2E-18 4.3E-23 140.2 12.2 149 3-182 19-174 (204)
46 cd03007 PDI_a_ERp29_N PDIa fam 99.8 6.8E-19 1.5E-23 129.3 8.3 82 3-90 20-115 (116)
47 cd02963 TRX_DnaJ TRX domain, D 99.8 6.8E-19 1.5E-23 130.9 8.1 85 3-89 26-110 (111)
48 cd02993 PDI_a_APS_reductase PD 99.8 1.1E-18 2.4E-23 129.5 9.2 84 3-87 23-109 (109)
49 PRK10996 thioredoxin 2; Provis 99.8 3.4E-18 7.4E-23 132.2 11.8 105 101-209 34-138 (139)
50 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.6E-18 3.6E-23 128.7 9.5 84 3-88 20-109 (109)
51 cd02985 TRX_CDSP32 TRX family, 99.8 2.5E-18 5.5E-23 126.1 10.3 95 108-207 2-100 (103)
52 cd02956 ybbN ybbN protein fami 99.8 1.7E-18 3.7E-23 125.6 8.8 83 3-88 14-96 (96)
53 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.5E-18 3.2E-23 127.4 8.5 83 4-87 19-102 (102)
54 cd03001 PDI_a_P5 PDIa family, 99.8 3E-18 6.4E-23 126.0 9.6 83 3-87 20-102 (103)
55 cd02948 TRX_NDPK TRX domain, T 99.8 4.6E-18 1E-22 124.5 10.2 97 107-208 5-101 (102)
56 TIGR01126 pdi_dom protein disu 99.8 4.6E-18 9.9E-23 124.7 9.9 87 3-90 15-101 (102)
57 cd03000 PDI_a_TMX3 PDIa family 99.8 4.7E-18 1E-22 125.1 9.8 86 3-90 17-103 (104)
58 PHA02278 thioredoxin-like prot 99.8 2E-18 4.3E-23 125.6 7.6 81 3-86 16-100 (103)
59 cd03000 PDI_a_TMX3 PDIa family 99.8 6.3E-18 1.4E-22 124.4 10.2 96 110-209 7-103 (104)
60 cd02954 DIM1 Dim1 family; Dim1 99.8 1.1E-18 2.5E-23 127.7 6.2 73 3-78 16-88 (114)
61 cd02961 PDI_a_family Protein D 99.8 4.7E-18 1E-22 124.1 9.5 100 106-206 2-101 (101)
62 cd03065 PDI_b_Calsequestrin_N 99.7 3.4E-18 7.4E-23 127.2 7.5 87 2-90 28-118 (120)
63 cd02998 PDI_a_ERp38 PDIa famil 99.7 8.7E-18 1.9E-22 123.9 9.2 85 3-87 20-105 (105)
64 KOG0907 Thioredoxin [Posttrans 99.7 9.9E-18 2.2E-22 121.9 9.3 86 118-208 19-104 (106)
65 cd02992 PDI_a_QSOX PDIa family 99.7 1.9E-17 4.1E-22 123.5 11.1 100 103-202 2-108 (114)
66 cd02965 HyaE HyaE family; HyaE 99.7 1.9E-17 4.2E-22 120.3 10.7 96 104-203 12-109 (111)
67 PLN00410 U5 snRNP protein, DIM 99.7 1.4E-17 3E-22 126.7 10.1 104 108-213 10-123 (142)
68 TIGR00424 APS_reduc 5'-adenyly 99.7 1.9E-17 4.1E-22 149.8 12.4 109 100-209 349-462 (463)
69 PLN02309 5'-adenylylsulfate re 99.7 2E-17 4.3E-22 149.7 12.1 108 101-209 344-456 (457)
70 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 1.3E-17 2.9E-22 122.7 9.0 84 3-87 20-104 (104)
71 COG3118 Thioredoxin domain-con 99.7 1.2E-17 2.6E-22 139.2 9.4 89 2-93 44-132 (304)
72 cd02957 Phd_like Phosducin (Ph 99.7 2.8E-17 6.1E-22 122.7 10.1 89 102-195 4-94 (113)
73 cd02962 TMX2 TMX2 family; comp 99.7 3.8E-17 8.2E-22 127.0 10.8 94 100-195 26-126 (152)
74 KOG1731 FAD-dependent sulfhydr 99.7 2.8E-16 6.2E-21 140.9 17.8 286 5-302 61-372 (606)
75 TIGR01068 thioredoxin thioredo 99.7 4.9E-17 1.1E-21 118.9 10.8 100 107-209 1-100 (101)
76 PTZ00443 Thioredoxin domain-co 99.7 1.5E-17 3.2E-22 137.4 8.9 87 3-92 54-140 (224)
77 cd02986 DLP Dim1 family, Dim1- 99.7 4.7E-17 1E-21 118.1 10.4 82 110-193 3-85 (114)
78 cd02950 TxlA TRX-like protein 99.7 6E-17 1.3E-21 125.5 11.8 102 109-213 10-113 (142)
79 cd02997 PDI_a_PDIR PDIa family 99.7 2E-17 4.4E-22 121.7 8.7 84 3-87 19-104 (104)
80 cd02989 Phd_like_TxnDC9 Phosdu 99.7 6.7E-17 1.5E-21 120.2 11.2 88 103-195 5-93 (113)
81 KOG0907 Thioredoxin [Posttrans 99.7 1E-17 2.2E-22 121.8 6.6 82 3-89 23-104 (106)
82 cd02953 DsbDgamma DsbD gamma f 99.7 3.8E-17 8.1E-22 120.3 9.5 94 110-206 2-103 (104)
83 cd02985 TRX_CDSP32 TRX family, 99.7 2.6E-17 5.6E-22 120.7 8.5 81 3-88 17-100 (103)
84 TIGR01130 ER_PDI_fam protein d 99.7 2.2E-17 4.7E-22 153.7 8.9 110 103-213 2-112 (462)
85 cd02948 TRX_NDPK TRX domain, T 99.7 4.6E-17 9.9E-22 119.2 8.2 83 3-89 19-101 (102)
86 cd02961 PDI_a_family Protein D 99.7 6.8E-17 1.5E-21 117.9 9.1 85 3-87 17-101 (101)
87 PRK09381 trxA thioredoxin; Pro 99.7 6.9E-17 1.5E-21 119.9 9.0 86 3-91 23-108 (109)
88 PTZ00102 disulphide isomerase; 99.7 1.3E-16 2.8E-21 149.1 12.1 111 100-213 30-141 (477)
89 KOG4277 Uncharacterized conser 99.7 2.6E-17 5.5E-22 136.0 6.0 92 119-212 42-134 (468)
90 KOG0912 Thiol-disulfide isomer 99.7 8.6E-17 1.9E-21 133.1 8.6 105 107-212 1-108 (375)
91 PRK10996 thioredoxin 2; Provis 99.7 1.3E-16 2.7E-21 123.4 8.9 85 3-90 54-138 (139)
92 cd02953 DsbDgamma DsbD gamma f 99.7 2.3E-16 5E-21 116.1 8.8 84 3-88 13-104 (104)
93 cd02984 TRX_PICOT TRX domain, 99.7 3.5E-16 7.5E-21 113.6 9.5 94 109-206 2-96 (97)
94 cd02975 PfPDO_like_N Pyrococcu 99.7 5.6E-16 1.2E-20 115.3 10.3 96 112-211 15-111 (113)
95 cd02949 TRX_NTR TRX domain, no 99.7 5.9E-16 1.3E-20 112.3 10.2 93 112-207 5-97 (97)
96 PLN00410 U5 snRNP protein, DIM 99.7 2.5E-16 5.4E-21 119.9 8.5 86 3-90 25-119 (142)
97 cd02987 Phd_like_Phd Phosducin 99.7 7.9E-16 1.7E-20 123.2 11.4 104 100-208 60-173 (175)
98 TIGR01068 thioredoxin thioredo 99.7 5.3E-16 1.1E-20 113.4 9.3 85 3-90 16-100 (101)
99 PLN02309 5'-adenylylsulfate re 99.7 3.4E-16 7.4E-21 141.7 9.8 86 3-89 367-455 (457)
100 cd02992 PDI_a_QSOX PDIa family 99.7 8.8E-16 1.9E-20 114.5 10.0 83 3-85 21-110 (114)
101 KOG0908 Thioredoxin-like prote 99.7 8.4E-16 1.8E-20 124.0 10.3 106 108-218 8-114 (288)
102 cd02950 TxlA TRX-like protein 99.6 8E-16 1.7E-20 119.2 9.1 88 3-92 22-111 (142)
103 TIGR00424 APS_reduc 5'-adenyly 99.6 6.4E-16 1.4E-20 140.0 9.8 86 3-89 373-461 (463)
104 cd02962 TMX2 TMX2 family; comp 99.6 4.2E-16 9.1E-21 121.1 7.4 72 3-76 49-126 (152)
105 cd02986 DLP Dim1 family, Dim1- 99.6 5.4E-16 1.2E-20 112.5 7.0 70 3-74 16-85 (114)
106 cd02949 TRX_NTR TRX domain, no 99.6 9.3E-16 2E-20 111.3 8.0 83 3-88 15-97 (97)
107 PTZ00051 thioredoxin; Provisio 99.6 2E-15 4.3E-20 109.8 9.6 90 108-203 7-96 (98)
108 cd02965 HyaE HyaE family; HyaE 99.6 9.2E-16 2E-20 111.5 7.3 79 3-84 29-109 (111)
109 cd02989 Phd_like_TxnDC9 Phosdu 99.6 2.1E-15 4.5E-20 112.2 9.2 64 3-69 24-87 (113)
110 cd02975 PfPDO_like_N Pyrococcu 99.6 1.8E-15 3.9E-20 112.6 7.9 85 3-90 24-109 (113)
111 cd02957 Phd_like Phosducin (Ph 99.6 7.3E-16 1.6E-20 115.0 5.6 69 3-76 26-94 (113)
112 cd02951 SoxW SoxW family; SoxW 99.6 5E-15 1.1E-19 112.7 9.8 96 113-211 7-120 (125)
113 cd02984 TRX_PICOT TRX domain, 99.6 2.7E-15 5.8E-20 108.9 7.7 81 3-87 16-96 (97)
114 KOG0908 Thioredoxin-like prote 99.6 1.7E-15 3.6E-20 122.3 6.9 89 3-96 23-111 (288)
115 cd02947 TRX_family TRX family; 99.6 1.7E-14 3.6E-19 103.3 10.2 91 111-206 2-92 (93)
116 PTZ00051 thioredoxin; Provisio 99.6 4E-15 8.6E-20 108.2 6.9 77 3-84 20-96 (98)
117 TIGR01295 PedC_BrcD bacterioci 99.6 1.7E-14 3.7E-19 108.5 10.1 99 103-207 7-121 (122)
118 PF13848 Thioredoxin_6: Thiore 99.6 3E-13 6.4E-18 110.1 17.6 173 18-208 7-184 (184)
119 cd02988 Phd_like_VIAF Phosduci 99.6 2E-14 4.4E-19 116.5 10.2 102 100-208 80-190 (192)
120 cd02951 SoxW SoxW family; SoxW 99.5 2.3E-14 5.1E-19 109.0 8.8 87 3-91 16-119 (125)
121 cd02987 Phd_like_Phd Phosducin 99.5 1.5E-14 3.2E-19 115.8 7.9 82 3-89 85-173 (175)
122 cd02982 PDI_b'_family Protein 99.5 7.8E-14 1.7E-18 102.3 9.7 88 120-209 12-102 (103)
123 cd02947 TRX_family TRX family; 99.5 3.5E-14 7.5E-19 101.6 7.7 82 3-88 12-93 (93)
124 TIGR00411 redox_disulf_1 small 99.5 8.5E-14 1.9E-18 97.6 8.5 79 4-89 2-80 (82)
125 TIGR00411 redox_disulf_1 small 99.5 3.3E-13 7.1E-18 94.6 9.8 80 123-209 2-81 (82)
126 TIGR03143 AhpF_homolog putativ 99.5 1.8E-12 3.9E-17 122.9 17.2 184 4-206 369-554 (555)
127 cd02982 PDI_b'_family Protein 99.5 2.6E-13 5.7E-18 99.5 8.9 85 3-89 14-101 (103)
128 TIGR02187 GlrX_arch Glutaredox 99.5 3E-13 6.6E-18 112.6 10.1 93 120-213 19-114 (215)
129 cd02959 ERp19 Endoplasmic reti 99.5 1.6E-13 3.5E-18 102.6 7.4 93 118-211 17-114 (117)
130 PTZ00062 glutaredoxin; Provisi 99.5 4.6E-13 1E-17 108.9 10.1 92 108-212 5-96 (204)
131 cd02952 TRP14_like Human TRX-r 99.5 2.4E-13 5.3E-18 100.9 7.5 78 108-187 8-101 (119)
132 TIGR01295 PedC_BrcD bacterioci 99.5 2.7E-13 5.8E-18 102.1 7.8 80 4-88 26-121 (122)
133 KOG1731 FAD-dependent sulfhydr 99.4 1.1E-13 2.4E-18 124.4 5.5 111 99-209 36-152 (606)
134 cd02988 Phd_like_VIAF Phosduci 99.4 3.1E-13 6.6E-18 109.6 7.1 80 3-89 104-190 (192)
135 PHA02125 thioredoxin-like prot 99.4 1.1E-12 2.4E-17 90.0 7.0 69 5-85 2-71 (75)
136 cd02952 TRP14_like Human TRX-r 99.4 1.7E-12 3.6E-17 96.4 8.3 64 3-68 23-101 (119)
137 PHA02125 thioredoxin-like prot 99.3 6.1E-12 1.3E-16 86.4 7.6 70 124-205 2-72 (75)
138 TIGR02738 TrbB type-F conjugat 99.3 1.8E-11 4E-16 95.5 11.2 90 118-209 48-152 (153)
139 TIGR00412 redox_disulf_2 small 99.3 4.7E-12 1E-16 87.0 6.9 73 5-87 2-75 (76)
140 PF13098 Thioredoxin_2: Thiore 99.3 2.3E-12 5.1E-17 96.0 5.8 87 118-206 3-112 (112)
141 PRK00293 dipZ thiol:disulfide 99.3 9.2E-12 2E-16 117.7 10.7 99 108-209 459-569 (571)
142 cd02959 ERp19 Endoplasmic reti 99.3 3.6E-12 7.8E-17 95.3 6.4 84 3-88 21-110 (117)
143 cd02955 SSP411 TRX domain, SSP 99.3 1.2E-11 2.6E-16 92.8 8.3 80 110-192 6-96 (124)
144 PRK14018 trifunctional thiored 99.3 1.1E-11 2.4E-16 114.1 9.6 89 118-207 54-170 (521)
145 TIGR02740 TraF-like TraF-like 99.3 2.4E-11 5.2E-16 104.1 11.1 89 119-211 165-265 (271)
146 cd02973 TRX_GRX_like Thioredox 99.3 1.1E-11 2.5E-16 83.1 6.3 57 4-63 2-58 (67)
147 cd03008 TryX_like_RdCVF Trypar 99.3 2.3E-11 5E-16 93.8 8.2 70 119-188 24-124 (146)
148 PRK00293 dipZ thiol:disulfide 99.3 2.4E-11 5.1E-16 114.9 9.8 85 3-90 476-569 (571)
149 PRK03147 thiol-disulfide oxido 99.3 1E-10 2.2E-15 94.2 12.2 104 104-209 46-171 (173)
150 TIGR00412 redox_disulf_2 small 99.3 3E-11 6.5E-16 83.0 7.7 72 125-206 3-75 (76)
151 TIGR02738 TrbB type-F conjugat 99.2 2.7E-11 5.9E-16 94.5 8.3 83 3-89 52-151 (153)
152 TIGR02740 TraF-like TraF-like 99.2 1.9E-11 4.2E-16 104.7 8.1 86 3-92 168-265 (271)
153 PF13098 Thioredoxin_2: Thiore 99.2 1.6E-11 3.5E-16 91.4 6.7 85 3-87 7-112 (112)
154 cd03009 TryX_like_TryX_NRX Try 99.2 4.3E-11 9.2E-16 91.8 8.9 70 119-188 17-111 (131)
155 PRK15412 thiol:disulfide inter 99.2 7.2E-11 1.6E-15 96.0 10.6 88 118-210 66-176 (185)
156 PRK14018 trifunctional thiored 99.2 2.9E-11 6.3E-16 111.3 8.8 87 3-90 58-172 (521)
157 PF07912 ERp29_N: ERp29, N-ter 99.2 3.6E-10 7.8E-15 82.0 12.3 106 103-211 5-120 (126)
158 PF13905 Thioredoxin_8: Thiore 99.2 6.6E-11 1.4E-15 85.3 8.5 69 120-188 1-94 (95)
159 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 9.3E-11 2E-15 88.8 9.6 93 106-204 7-120 (123)
160 cd03010 TlpA_like_DsbE TlpA-li 99.2 6.5E-11 1.4E-15 90.3 8.7 80 119-202 24-126 (127)
161 PRK11509 hydrogenase-1 operon 99.2 3.8E-10 8.3E-15 84.7 12.4 105 106-213 21-127 (132)
162 cd02973 TRX_GRX_like Thioredox 99.2 4.8E-11 1E-15 80.1 6.9 57 123-182 2-58 (67)
163 cd02964 TryX_like_family Trypa 99.2 6.3E-11 1.4E-15 91.0 8.2 70 119-188 16-111 (132)
164 PRK03147 thiol-disulfide oxido 99.2 1.1E-10 2.3E-15 94.1 9.3 86 3-89 63-170 (173)
165 TIGR00385 dsbE periplasmic pro 99.2 5.8E-11 1.3E-15 95.5 7.7 89 118-211 61-172 (173)
166 cd03009 TryX_like_TryX_NRX Try 99.2 8.9E-11 1.9E-15 90.0 7.8 67 3-69 20-111 (131)
167 cd03008 TryX_like_RdCVF Trypar 99.2 9E-11 2E-15 90.5 7.8 67 3-69 27-124 (146)
168 PF13905 Thioredoxin_8: Thiore 99.2 1.3E-10 2.7E-15 83.8 8.0 66 3-68 3-93 (95)
169 cd03010 TlpA_like_DsbE TlpA-li 99.2 7.9E-11 1.7E-15 89.8 6.9 77 3-83 27-126 (127)
170 cd02964 TryX_like_family Trypa 99.2 1.2E-10 2.6E-15 89.4 7.6 67 3-69 19-111 (132)
171 cd02966 TlpA_like_family TlpA- 99.1 2.3E-10 5E-15 85.0 8.6 76 119-195 18-116 (116)
172 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 3E-10 6.6E-15 80.3 8.5 76 120-203 12-87 (89)
173 cd02955 SSP411 TRX domain, SSP 99.1 1.6E-10 3.6E-15 86.7 7.5 66 3-70 17-93 (124)
174 PRK15412 thiol:disulfide inter 99.1 2.5E-10 5.4E-15 92.8 8.5 84 3-91 70-176 (185)
175 PRK15317 alkyl hydroperoxide r 99.1 3.1E-09 6.7E-14 100.3 16.8 177 6-211 23-199 (517)
176 PLN02919 haloacid dehalogenase 99.1 7.4E-10 1.6E-14 111.7 12.9 92 119-211 419-537 (1057)
177 TIGR00385 dsbE periplasmic pro 99.1 2.9E-10 6.2E-15 91.5 7.8 84 3-91 65-171 (173)
178 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 2.7E-10 5.8E-15 86.3 7.2 78 3-85 22-120 (123)
179 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 3.3E-10 7.1E-15 80.1 6.9 72 4-83 15-86 (89)
180 cd02966 TlpA_like_family TlpA- 99.1 3.5E-10 7.6E-15 84.0 7.2 73 3-76 21-116 (116)
181 PF01216 Calsequestrin: Calseq 99.1 2.1E-08 4.5E-13 85.6 17.7 186 4-210 54-247 (383)
182 PRK13728 conjugal transfer pro 99.1 1.3E-09 2.7E-14 86.7 9.6 85 124-212 73-173 (181)
183 cd02958 UAS UAS family; UAS is 99.1 2.5E-09 5.4E-14 79.8 10.7 91 118-210 15-111 (114)
184 KOG0913 Thiol-disulfide isomer 99.0 1.3E-10 2.8E-15 93.6 2.8 103 102-210 24-126 (248)
185 PRK13728 conjugal transfer pro 99.0 1.4E-09 3E-14 86.5 8.4 83 5-91 73-171 (181)
186 TIGR03140 AhpF alkyl hydropero 99.0 2.7E-08 5.8E-13 93.8 17.3 177 6-210 23-199 (515)
187 cd03012 TlpA_like_DipZ_like Tl 99.0 3E-09 6.5E-14 80.9 8.7 77 119-196 22-125 (126)
188 PLN02919 haloacid dehalogenase 99.0 1.4E-09 3.1E-14 109.7 8.8 87 3-90 422-535 (1057)
189 KOG0913 Thiol-disulfide isomer 99.0 1.6E-10 3.5E-15 93.0 1.4 85 4-91 42-126 (248)
190 cd02967 mauD Methylamine utili 98.9 3.1E-09 6.7E-14 79.3 7.5 40 119-160 20-59 (114)
191 cd03012 TlpA_like_DipZ_like Tl 98.9 3.2E-09 6.9E-14 80.8 7.1 73 3-76 25-124 (126)
192 COG4232 Thiol:disulfide interc 98.9 2.6E-09 5.6E-14 97.8 7.1 98 111-209 464-567 (569)
193 cd02958 UAS UAS family; UAS is 98.9 7.3E-09 1.6E-13 77.3 8.4 86 3-90 19-110 (114)
194 cd02960 AGR Anterior Gradient 98.9 6.2E-09 1.3E-13 78.2 7.8 77 117-196 20-99 (130)
195 PF08534 Redoxin: Redoxin; In 98.9 8E-09 1.7E-13 80.7 8.8 90 107-198 16-136 (146)
196 COG4232 Thiol:disulfide interc 98.9 3.8E-09 8.3E-14 96.7 7.1 87 3-90 476-567 (569)
197 PTZ00056 glutathione peroxidas 98.9 1.3E-08 2.7E-13 83.6 9.3 43 119-162 38-80 (199)
198 smart00594 UAS UAS domain. 98.8 2.6E-08 5.6E-13 75.2 9.4 87 118-206 25-121 (122)
199 TIGR01626 ytfJ_HI0045 conserve 98.8 1.6E-08 3.4E-13 81.0 8.5 88 119-206 58-176 (184)
200 cd02967 mauD Methylamine utili 98.8 5.2E-09 1.1E-13 78.0 5.4 57 3-61 23-82 (114)
201 PLN02399 phospholipid hydroper 98.8 3.2E-08 6.8E-13 82.7 10.6 91 119-210 98-234 (236)
202 PRK11509 hydrogenase-1 operon 98.8 9.5E-09 2.1E-13 77.2 6.5 80 12-93 47-126 (132)
203 smart00594 UAS UAS domain. 98.8 2.4E-08 5.2E-13 75.3 8.1 83 3-87 29-121 (122)
204 PF13899 Thioredoxin_7: Thiore 98.8 1E-08 2.3E-13 71.6 4.8 65 118-185 15-82 (82)
205 TIGR02661 MauD methylamine deh 98.8 7.1E-08 1.5E-12 78.6 10.3 86 119-208 73-177 (189)
206 PLN02412 probable glutathione 98.8 4.5E-08 9.7E-13 78.1 8.8 91 119-210 28-164 (167)
207 PF13899 Thioredoxin_7: Thiore 98.8 2.1E-08 4.6E-13 70.0 6.0 61 3-66 19-82 (82)
208 cd02960 AGR Anterior Gradient 98.8 3.5E-08 7.7E-13 74.1 7.4 71 3-77 25-99 (130)
209 PF08534 Redoxin: Redoxin; In 98.7 3.7E-08 8.1E-13 76.9 7.6 75 4-79 31-136 (146)
210 cd02969 PRX_like1 Peroxiredoxi 98.7 2.2E-07 4.7E-12 74.6 12.0 95 119-214 24-156 (171)
211 PTZ00056 glutathione peroxidas 98.7 5.7E-08 1.2E-12 79.7 8.1 41 3-44 41-81 (199)
212 KOG2501 Thioredoxin, nucleored 98.7 3.1E-08 6.7E-13 75.9 5.9 68 3-70 35-128 (157)
213 PLN02399 phospholipid hydroper 98.7 6.4E-08 1.4E-12 80.9 8.4 87 3-90 101-233 (236)
214 KOG0914 Thioredoxin-like prote 98.7 2.7E-08 5.9E-13 79.3 5.4 88 100-188 122-217 (265)
215 TIGR02196 GlrX_YruB Glutaredox 98.7 8.7E-08 1.9E-12 65.1 7.0 69 5-88 2-74 (74)
216 KOG2501 Thioredoxin, nucleored 98.7 3.4E-08 7.3E-13 75.7 5.2 70 119-188 32-127 (157)
217 COG0526 TrxA Thiol-disulfide i 98.7 9.1E-08 2E-12 71.1 7.7 71 3-76 34-107 (127)
218 KOG0914 Thioredoxin-like prote 98.7 2.3E-08 5E-13 79.7 4.3 67 3-70 146-218 (265)
219 TIGR02540 gpx7 putative glutat 98.7 2.8E-07 6.2E-12 72.5 10.3 43 119-162 21-63 (153)
220 cd00340 GSH_Peroxidase Glutath 98.7 1.3E-07 2.9E-12 74.3 8.3 42 119-162 21-62 (152)
221 TIGR02196 GlrX_YruB Glutaredox 98.6 1.3E-07 2.7E-12 64.4 6.6 69 124-207 2-74 (74)
222 COG0526 TrxA Thiol-disulfide i 98.6 1.9E-07 4.2E-12 69.3 8.2 73 120-195 32-107 (127)
223 TIGR02661 MauD methylamine deh 98.6 2.2E-07 4.8E-12 75.8 8.7 83 3-89 76-177 (189)
224 cd01659 TRX_superfamily Thiore 98.6 1.4E-07 3.1E-12 61.8 6.3 60 5-67 1-63 (69)
225 PLN02412 probable glutathione 98.6 2.3E-07 5.1E-12 74.0 8.4 41 3-44 31-71 (167)
226 KOG0911 Glutaredoxin-related p 98.6 3.5E-07 7.5E-12 73.8 9.0 155 3-172 19-186 (227)
227 PF01216 Calsequestrin: Calseq 98.5 8.3E-07 1.8E-11 76.0 10.8 107 102-212 34-146 (383)
228 PF13728 TraF: F plasmid trans 98.5 3.4E-07 7.4E-12 75.8 8.1 79 3-85 122-212 (215)
229 cd02969 PRX_like1 Peroxiredoxi 98.5 5.2E-07 1.1E-11 72.4 8.8 89 3-92 27-153 (171)
230 cd00340 GSH_Peroxidase Glutath 98.5 2.1E-07 4.7E-12 73.1 6.3 40 3-44 24-63 (152)
231 COG2143 Thioredoxin-related pr 98.5 1E-06 2.2E-11 66.7 9.2 89 117-207 39-146 (182)
232 TIGR01626 ytfJ_HI0045 conserve 98.5 3.2E-07 7E-12 73.5 6.9 79 4-87 62-176 (184)
233 TIGR02200 GlrX_actino Glutared 98.5 5E-07 1.1E-11 62.0 6.8 69 5-87 2-75 (77)
234 PF13192 Thioredoxin_3: Thiore 98.5 6.2E-07 1.3E-11 61.5 7.1 73 6-88 3-76 (76)
235 cd03017 PRX_BCP Peroxiredoxin 98.5 1.1E-06 2.5E-11 67.9 9.0 86 119-205 22-138 (140)
236 TIGR02540 gpx7 putative glutat 98.4 8.6E-07 1.9E-11 69.7 7.9 39 4-43 25-63 (153)
237 PTZ00256 glutathione peroxidas 98.4 1.9E-06 4.1E-11 69.9 10.1 43 119-162 39-82 (183)
238 TIGR02200 GlrX_actino Glutared 98.4 1E-06 2.2E-11 60.5 6.8 69 124-206 2-75 (77)
239 PF13728 TraF: F plasmid trans 98.4 2.1E-06 4.6E-11 71.1 9.5 83 119-205 119-213 (215)
240 cd03015 PRX_Typ2cys Peroxiredo 98.4 3.2E-06 6.9E-11 67.9 9.8 90 119-209 28-156 (173)
241 cd01659 TRX_superfamily Thiore 98.4 1.2E-06 2.5E-11 57.3 6.2 60 124-186 1-63 (69)
242 PF00578 AhpC-TSA: AhpC/TSA fa 98.4 2.1E-06 4.6E-11 64.7 8.1 69 119-188 24-120 (124)
243 PF13192 Thioredoxin_3: Thiore 98.4 2.3E-06 4.9E-11 58.7 7.4 72 126-207 4-76 (76)
244 PF14595 Thioredoxin_9: Thiore 98.3 1.1E-06 2.3E-11 66.7 5.7 84 108-194 29-115 (129)
245 TIGR02739 TraF type-F conjugat 98.3 2.3E-06 5E-11 72.1 8.3 83 3-89 152-246 (256)
246 PF02114 Phosducin: Phosducin; 98.3 3.1E-06 6.8E-11 72.1 9.2 104 101-209 124-237 (265)
247 PRK00522 tpx lipid hydroperoxi 98.3 6.1E-06 1.3E-10 65.9 9.7 42 119-163 43-85 (167)
248 PF03190 Thioredox_DsbH: Prote 98.3 5.4E-06 1.2E-10 64.7 8.8 95 84-188 9-114 (163)
249 PRK09437 bcp thioredoxin-depen 98.3 1.2E-05 2.6E-10 63.3 10.7 80 119-199 29-142 (154)
250 cd03017 PRX_BCP Peroxiredoxin 98.3 2.9E-06 6.2E-11 65.6 7.0 81 4-85 26-137 (140)
251 cd02970 PRX_like2 Peroxiredoxi 98.3 5E-06 1.1E-10 64.9 8.3 47 119-166 22-69 (149)
252 cd02981 PDI_b_family Protein D 98.3 1.3E-05 2.9E-10 57.6 9.9 87 112-208 10-96 (97)
253 TIGR03137 AhpC peroxiredoxin. 98.3 8.4E-06 1.8E-10 66.3 9.7 90 119-209 30-155 (187)
254 PTZ00256 glutathione peroxidas 98.3 4.6E-06 1E-10 67.6 8.1 40 4-44 44-83 (183)
255 TIGR02180 GRX_euk Glutaredoxin 98.2 2.2E-06 4.7E-11 59.9 5.3 54 5-62 1-59 (84)
256 cd02983 P5_C P5 family, C-term 98.2 2.5E-05 5.4E-10 59.4 11.3 108 103-213 3-118 (130)
257 cd03072 PDI_b'_ERp44 PDIb' fam 98.2 1.7E-05 3.7E-10 58.6 10.1 103 104-211 1-109 (111)
258 cd02991 UAS_ETEA UAS family, E 98.2 8.2E-06 1.8E-10 60.6 8.2 88 118-210 15-113 (116)
259 PF00578 AhpC-TSA: AhpC/TSA fa 98.2 5.7E-06 1.2E-10 62.4 7.2 66 3-69 27-120 (124)
260 cd03015 PRX_Typ2cys Peroxiredo 98.2 6.7E-06 1.4E-10 66.1 7.7 87 3-90 31-156 (173)
261 TIGR02180 GRX_euk Glutaredoxin 98.2 3.6E-06 7.7E-11 58.8 5.1 54 124-181 1-59 (84)
262 PF02114 Phosducin: Phosducin; 98.2 6.7E-06 1.5E-10 70.1 7.7 87 2-92 147-239 (265)
263 COG2143 Thioredoxin-related pr 98.1 1.7E-05 3.6E-10 60.2 8.4 85 3-89 44-147 (182)
264 PRK13703 conjugal pilus assemb 98.1 1E-05 2.2E-10 67.9 7.8 85 3-89 145-239 (248)
265 cd02968 SCO SCO (an acronym fo 98.1 1.1E-05 2.4E-10 62.4 7.7 45 119-163 21-68 (142)
266 cd02970 PRX_like2 Peroxiredoxi 98.1 8.6E-06 1.9E-10 63.5 6.6 43 4-47 27-69 (149)
267 PRK00522 tpx lipid hydroperoxi 98.1 1.4E-05 3E-10 63.8 7.9 51 3-56 46-100 (167)
268 PRK13190 putative peroxiredoxi 98.1 4.6E-05 1E-09 62.7 10.8 91 119-210 26-154 (202)
269 PRK10606 btuE putative glutath 98.1 3E-05 6.4E-10 62.5 9.4 118 3-134 27-168 (183)
270 PF14595 Thioredoxin_9: Thiore 98.1 6.5E-06 1.4E-10 62.4 5.1 65 3-70 43-110 (129)
271 PRK10382 alkyl hydroperoxide r 98.1 4.7E-05 1E-09 61.7 10.3 91 119-210 30-156 (187)
272 TIGR03137 AhpC peroxiredoxin. 98.1 1.7E-05 3.7E-10 64.5 7.8 86 3-89 33-154 (187)
273 KOG2603 Oligosaccharyltransfer 98.1 4.2E-05 9.1E-10 64.8 10.2 115 100-214 38-170 (331)
274 PRK15000 peroxidase; Provision 98.1 3.7E-05 8E-10 63.1 9.7 90 119-209 33-161 (200)
275 cd03018 PRX_AhpE_like Peroxire 98.0 3.3E-05 7.2E-10 60.3 8.9 42 121-163 29-71 (149)
276 TIGR02739 TraF type-F conjugat 98.0 5.1E-05 1.1E-09 64.1 10.1 88 119-210 149-248 (256)
277 cd03014 PRX_Atyp2cys Peroxired 98.0 3.7E-05 7.9E-10 59.6 8.6 42 119-163 25-67 (143)
278 cd03073 PDI_b'_ERp72_ERp57 PDI 98.0 7.3E-05 1.6E-09 55.1 9.5 99 106-209 3-110 (111)
279 PRK11200 grxA glutaredoxin 1; 98.0 4.8E-05 1E-09 53.3 7.9 77 123-211 2-84 (85)
280 cd02971 PRX_family Peroxiredox 98.0 3.8E-05 8.2E-10 59.2 8.2 44 119-163 21-65 (140)
281 cd02968 SCO SCO (an acronym fo 98.0 1.5E-05 3.2E-10 61.8 5.7 43 3-45 24-69 (142)
282 KOG1672 ATP binding protein [P 98.0 2.3E-05 5E-10 61.8 6.5 88 103-195 67-155 (211)
283 PRK11200 grxA glutaredoxin 1; 98.0 1.9E-05 4.1E-10 55.4 5.6 76 4-91 2-83 (85)
284 PF07912 ERp29_N: ERp29, N-ter 97.9 6.2E-05 1.3E-09 55.1 7.9 77 18-94 36-122 (126)
285 cd02991 UAS_ETEA UAS family, E 97.9 3E-05 6.4E-10 57.7 6.3 85 3-90 19-112 (116)
286 PRK13190 putative peroxiredoxi 97.9 3.1E-05 6.8E-10 63.7 7.1 85 4-89 31-152 (202)
287 cd03018 PRX_AhpE_like Peroxire 97.9 4.3E-05 9.2E-10 59.7 7.5 41 4-45 31-72 (149)
288 PRK09437 bcp thioredoxin-depen 97.9 4.4E-05 9.5E-10 60.0 7.5 42 3-45 32-74 (154)
289 cd02976 NrdH NrdH-redoxin (Nrd 97.9 4.1E-05 9E-10 51.5 6.3 51 5-63 2-56 (73)
290 cd02976 NrdH NrdH-redoxin (Nrd 97.9 3.4E-05 7.3E-10 52.0 5.6 67 124-205 2-72 (73)
291 PRK13703 conjugal pilus assemb 97.9 0.00017 3.6E-09 60.6 10.2 87 119-209 142-240 (248)
292 cd03016 PRX_1cys Peroxiredoxin 97.8 0.00016 3.4E-09 59.7 9.7 89 122-211 28-155 (203)
293 PRK10382 alkyl hydroperoxide r 97.8 0.00011 2.5E-09 59.5 8.4 86 3-89 33-154 (187)
294 PRK10877 protein disulfide iso 97.8 6.9E-05 1.5E-09 63.0 7.2 83 119-209 106-230 (232)
295 cd03016 PRX_1cys Peroxiredoxin 97.8 9.3E-05 2E-09 61.0 7.7 86 3-89 28-152 (203)
296 PRK13189 peroxiredoxin; Provis 97.8 0.00019 4.1E-09 60.0 9.5 91 119-210 34-163 (222)
297 KOG1672 ATP binding protein [P 97.8 2.6E-05 5.6E-10 61.5 3.9 63 4-69 87-149 (211)
298 KOG3414 Component of the U4/U6 97.8 0.0004 8.7E-09 50.8 9.6 100 109-210 11-120 (142)
299 PRK13599 putative peroxiredoxi 97.8 0.00033 7.2E-09 58.1 10.7 89 120-209 28-155 (215)
300 KOG2603 Oligosaccharyltransfer 97.8 0.00017 3.6E-09 61.3 8.7 95 2-96 61-171 (331)
301 TIGR03143 AhpF_homolog putativ 97.8 7.3E-05 1.6E-09 71.4 7.5 75 5-87 480-554 (555)
302 PF06110 DUF953: Eukaryotic pr 97.8 7.2E-05 1.6E-09 55.4 5.7 67 118-186 17-99 (119)
303 PTZ00137 2-Cys peroxiredoxin; 97.7 0.00031 6.8E-09 59.7 10.3 90 119-209 97-224 (261)
304 TIGR02183 GRXA Glutaredoxin, G 97.7 0.00011 2.4E-09 51.6 6.3 76 5-92 2-83 (86)
305 PRK15000 peroxidase; Provision 97.7 0.00011 2.4E-09 60.4 7.1 86 3-89 36-160 (200)
306 KOG0911 Glutaredoxin-related p 97.7 2.5E-05 5.4E-10 63.3 2.9 79 118-200 15-93 (227)
307 cd03014 PRX_Atyp2cys Peroxired 97.7 7.8E-05 1.7E-09 57.8 5.7 54 3-59 28-85 (143)
308 PF03190 Thioredox_DsbH: Prote 97.7 0.00011 2.5E-09 57.3 6.3 65 3-69 39-114 (163)
309 PRK15317 alkyl hydroperoxide r 97.7 0.00014 3E-09 68.9 8.2 81 4-92 119-199 (517)
310 PRK10606 btuE putative glutath 97.7 0.00016 3.5E-09 58.3 7.4 81 119-211 24-116 (183)
311 PF00462 Glutaredoxin: Glutare 97.7 0.00017 3.6E-09 46.8 6.0 51 5-63 1-55 (60)
312 PF06110 DUF953: Eukaryotic pr 97.7 0.0002 4.2E-09 53.1 6.9 62 4-67 22-99 (119)
313 PRK13191 putative peroxiredoxi 97.7 0.00035 7.6E-09 58.0 9.3 91 119-210 32-161 (215)
314 cd02971 PRX_family Peroxiredox 97.7 0.00015 3.3E-09 55.8 6.7 41 4-45 25-66 (140)
315 KOG3425 Uncharacterized conser 97.7 0.00016 3.5E-09 52.4 6.0 62 4-67 28-105 (128)
316 PF00462 Glutaredoxin: Glutare 97.6 0.00016 3.4E-09 46.9 5.5 51 124-182 1-55 (60)
317 cd03419 GRX_GRXh_1_2_like Glut 97.6 0.00012 2.5E-09 50.8 5.1 51 5-61 2-57 (82)
318 cd03020 DsbA_DsbC_DsbG DsbA fa 97.6 0.00026 5.6E-09 58.1 7.7 79 119-206 76-197 (197)
319 cd02981 PDI_b_family Protein D 97.6 0.0006 1.3E-08 48.9 8.7 78 3-89 19-96 (97)
320 PRK10877 protein disulfide iso 97.6 0.00017 3.7E-09 60.6 6.5 77 4-90 110-230 (232)
321 cd02983 P5_C P5 family, C-term 97.6 0.00051 1.1E-08 52.2 8.4 77 17-95 40-119 (130)
322 PRK13599 putative peroxiredoxi 97.6 0.0003 6.6E-09 58.4 7.8 86 3-89 31-154 (215)
323 PRK13189 peroxiredoxin; Provis 97.6 0.0003 6.6E-09 58.7 7.6 86 3-89 38-161 (222)
324 PF13848 Thioredoxin_6: Thiore 97.6 0.00039 8.5E-09 56.1 8.0 84 4-89 98-184 (184)
325 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00013 2.8E-09 59.9 5.1 76 3-87 79-197 (197)
326 PF07449 HyaE: Hydrogenase-1 e 97.5 0.00078 1.7E-08 48.8 8.3 92 103-199 10-104 (107)
327 PTZ00137 2-Cys peroxiredoxin; 97.5 0.00046 9.9E-09 58.7 8.3 86 3-89 100-223 (261)
328 TIGR02183 GRXA Glutaredoxin, G 97.5 0.0002 4.3E-09 50.2 5.2 76 124-211 2-83 (86)
329 cd03419 GRX_GRXh_1_2_like Glut 97.5 0.00031 6.7E-09 48.6 5.8 51 124-180 2-57 (82)
330 KOG3425 Uncharacterized conser 97.5 0.00055 1.2E-08 49.7 6.9 65 119-185 24-104 (128)
331 PTZ00253 tryparedoxin peroxida 97.5 0.001 2.2E-08 54.6 9.6 90 119-209 35-163 (199)
332 cd03066 PDI_b_Calsequestrin_mi 97.5 0.0022 4.8E-08 46.5 10.1 95 105-209 3-100 (102)
333 cd03073 PDI_b'_ERp72_ERp57 PDI 97.5 0.00092 2E-08 49.3 8.1 76 13-90 30-110 (111)
334 cd03023 DsbA_Com1_like DsbA fa 97.5 0.0012 2.6E-08 51.4 9.5 31 119-149 4-34 (154)
335 PF13462 Thioredoxin_4: Thiore 97.4 0.0017 3.7E-08 51.2 10.2 84 119-208 11-162 (162)
336 PF05768 DUF836: Glutaredoxin- 97.4 0.00052 1.1E-08 47.5 6.0 79 5-88 2-81 (81)
337 TIGR02190 GlrX-dom Glutaredoxi 97.4 0.00037 7.9E-09 48.0 5.1 55 120-182 6-63 (79)
338 PF05768 DUF836: Glutaredoxin- 97.4 0.00041 8.8E-09 48.1 5.2 79 124-207 2-81 (81)
339 TIGR02194 GlrX_NrdH Glutaredox 97.4 0.00048 1E-08 46.5 5.3 66 125-204 2-70 (72)
340 PRK13191 putative peroxiredoxi 97.3 0.0007 1.5E-08 56.2 6.9 86 3-89 36-159 (215)
341 cd03069 PDI_b_ERp57 PDIb famil 97.3 0.0025 5.5E-08 46.4 9.0 90 109-209 8-103 (104)
342 TIGR03140 AhpF alkyl hydropero 97.3 0.00091 2E-08 63.3 8.3 79 4-90 120-198 (515)
343 cd02066 GRX_family Glutaredoxi 97.3 0.0006 1.3E-08 45.5 5.2 51 5-63 2-56 (72)
344 cd02066 GRX_family Glutaredoxi 97.3 0.00064 1.4E-08 45.4 5.4 51 124-182 2-56 (72)
345 KOG3414 Component of the U4/U6 97.3 0.001 2.2E-08 48.7 6.4 85 3-89 25-118 (142)
346 PRK10329 glutaredoxin-like pro 97.3 0.0018 3.9E-08 44.8 7.4 72 124-210 3-77 (81)
347 PF13462 Thioredoxin_4: Thiore 97.3 0.0031 6.7E-08 49.7 9.8 41 3-43 14-54 (162)
348 KOG2640 Thioredoxin [Function 97.2 0.00023 5E-09 60.5 3.1 124 3-148 78-202 (319)
349 TIGR02194 GlrX_NrdH Glutaredox 97.2 0.00088 1.9E-08 45.2 5.4 66 6-85 2-70 (72)
350 TIGR02190 GlrX-dom Glutaredoxi 97.2 0.0008 1.7E-08 46.3 5.2 51 5-63 10-63 (79)
351 TIGR02181 GRX_bact Glutaredoxi 97.2 0.00054 1.2E-08 47.1 4.2 51 124-182 1-55 (79)
352 PRK11657 dsbG disulfide isomer 97.2 0.0037 8E-08 53.2 9.8 84 119-207 116-249 (251)
353 TIGR02189 GlrX-like_plant Glut 97.2 0.00072 1.6E-08 48.8 4.5 53 122-180 8-65 (99)
354 PHA03050 glutaredoxin; Provisi 97.1 0.00099 2.1E-08 48.8 5.0 58 122-182 13-75 (108)
355 cd03067 PDI_b_PDIR_N PDIb fami 97.1 0.004 8.7E-08 43.8 7.4 82 4-89 22-110 (112)
356 cd03418 GRX_GRXb_1_3_like Glut 97.1 0.0014 2.9E-08 44.5 5.1 50 124-181 2-56 (75)
357 cd03027 GRX_DEP Glutaredoxin ( 97.1 0.0015 3.3E-08 44.1 5.3 51 124-182 3-57 (73)
358 TIGR02181 GRX_bact Glutaredoxi 97.1 0.0011 2.5E-08 45.5 4.7 51 5-63 1-55 (79)
359 cd02972 DsbA_family DsbA famil 97.0 0.0018 4E-08 45.9 5.8 59 5-65 1-91 (98)
360 PTZ00253 tryparedoxin peroxida 97.0 0.0027 5.8E-08 52.2 7.3 86 3-89 38-162 (199)
361 cd03072 PDI_b'_ERp44 PDIb' fam 97.0 0.0062 1.3E-07 44.9 8.2 75 15-91 28-108 (111)
362 PHA03050 glutaredoxin; Provisi 97.0 0.0013 2.8E-08 48.2 4.4 54 5-63 15-75 (108)
363 PF02966 DIM1: Mitosis protein 97.0 0.008 1.7E-07 44.8 8.5 76 109-187 8-85 (133)
364 cd03418 GRX_GRXb_1_3_like Glut 96.9 0.0029 6.3E-08 42.8 5.9 50 5-62 2-56 (75)
365 cd03027 GRX_DEP Glutaredoxin ( 96.9 0.0029 6.4E-08 42.7 5.8 51 5-63 3-57 (73)
366 PRK11657 dsbG disulfide isomer 96.9 0.0039 8.5E-08 53.1 7.8 80 4-88 120-249 (251)
367 TIGR02189 GlrX-like_plant Glut 96.9 0.0019 4E-08 46.6 5.0 50 5-62 10-66 (99)
368 cd03029 GRX_hybridPRX5 Glutare 96.9 0.0025 5.3E-08 42.9 5.0 66 124-206 3-71 (72)
369 PRK10329 glutaredoxin-like pro 96.9 0.0039 8.5E-08 43.1 6.0 71 5-90 3-76 (81)
370 COG0695 GrxC Glutaredoxin and 96.7 0.0036 7.9E-08 43.1 5.0 51 124-182 3-59 (80)
371 cd03029 GRX_hybridPRX5 Glutare 96.6 0.0057 1.2E-07 41.1 5.4 66 5-87 3-71 (72)
372 cd02972 DsbA_family DsbA famil 96.6 0.005 1.1E-07 43.6 5.4 59 124-184 1-91 (98)
373 TIGR00365 monothiol glutaredox 96.5 0.0084 1.8E-07 43.0 5.9 45 130-182 25-73 (97)
374 cd03067 PDI_b_PDIR_N PDIb fami 96.5 0.012 2.6E-07 41.5 6.3 95 109-208 9-110 (112)
375 PRK10638 glutaredoxin 3; Provi 96.5 0.006 1.3E-07 42.3 4.9 51 124-182 4-58 (83)
376 COG0695 GrxC Glutaredoxin and 96.4 0.0084 1.8E-07 41.3 5.1 51 5-63 3-59 (80)
377 PRK10638 glutaredoxin 3; Provi 96.3 0.01 2.2E-07 41.1 5.1 51 5-63 4-58 (83)
378 PF11009 DUF2847: Protein of u 96.2 0.017 3.8E-07 41.6 5.8 78 108-187 6-89 (105)
379 KOG3171 Conserved phosducin-li 96.2 0.024 5.2E-07 45.7 7.1 104 102-209 138-250 (273)
380 cd03028 GRX_PICOT_like Glutare 96.1 0.016 3.4E-07 40.9 5.4 44 130-181 21-68 (90)
381 cd03019 DsbA_DsbA DsbA family, 96.1 0.041 8.9E-07 44.0 8.4 32 119-150 14-45 (178)
382 PF02966 DIM1: Mitosis protein 95.9 0.036 7.8E-07 41.4 6.6 63 3-68 22-85 (133)
383 PF13743 Thioredoxin_5: Thiore 95.9 0.019 4.1E-07 46.1 5.5 27 126-152 2-28 (176)
384 TIGR00365 monothiol glutaredox 95.8 0.027 5.9E-07 40.4 5.5 45 11-63 25-73 (97)
385 cd03023 DsbA_Com1_like DsbA fa 95.7 0.02 4.3E-07 44.5 4.9 36 3-41 7-42 (154)
386 PRK10824 glutaredoxin-4; Provi 95.6 0.023 5.1E-07 41.9 4.7 45 130-182 28-76 (115)
387 cd03068 PDI_b_ERp72 PDIb famil 95.6 0.15 3.2E-06 37.3 8.8 92 109-209 8-107 (107)
388 cd03028 GRX_PICOT_like Glutare 95.6 0.039 8.4E-07 38.9 5.5 44 11-62 21-68 (90)
389 PRK10954 periplasmic protein d 95.4 0.1 2.2E-06 43.2 8.3 31 120-150 37-70 (207)
390 KOG2640 Thioredoxin [Function 95.1 0.013 2.8E-07 50.2 2.1 88 119-211 75-163 (319)
391 KOG3171 Conserved phosducin-li 95.1 0.055 1.2E-06 43.7 5.5 86 2-91 160-251 (273)
392 PRK12759 bifunctional gluaredo 94.9 0.043 9.4E-07 50.3 5.0 52 123-182 3-66 (410)
393 KOG3170 Conserved phosducin-li 94.7 0.24 5.2E-06 39.8 8.1 102 101-208 90-199 (240)
394 cd03074 PDI_b'_Calsequestrin_C 94.7 0.76 1.6E-05 33.0 9.7 104 106-209 5-119 (120)
395 PF13743 Thioredoxin_5: Thiore 94.7 0.095 2.1E-06 42.1 6.0 27 7-33 2-28 (176)
396 PF00837 T4_deiodinase: Iodoth 94.6 0.63 1.4E-05 38.8 10.6 62 96-158 76-140 (237)
397 COG1331 Highly conserved prote 94.6 0.38 8.2E-06 46.1 10.4 85 101-188 25-120 (667)
398 KOG1752 Glutaredoxin and relat 94.6 0.14 3E-06 37.1 6.0 56 121-182 13-73 (104)
399 KOG3170 Conserved phosducin-li 94.4 0.19 4.2E-06 40.3 6.8 83 2-90 112-200 (240)
400 PRK10824 glutaredoxin-4; Provi 94.4 0.095 2.1E-06 38.7 4.8 51 5-63 17-76 (115)
401 cd03069 PDI_b_ERp57 PDIb famil 94.3 0.39 8.4E-06 34.8 8.1 77 4-90 21-103 (104)
402 PF07449 HyaE: Hydrogenase-1 e 94.3 0.091 2E-06 38.1 4.6 63 5-69 29-94 (107)
403 PRK12759 bifunctional gluaredo 94.2 0.087 1.9E-06 48.4 5.4 51 5-63 4-66 (410)
404 KOG1752 Glutaredoxin and relat 94.0 0.2 4.4E-06 36.2 5.9 53 5-63 16-73 (104)
405 cd03066 PDI_b_Calsequestrin_mi 93.7 0.86 1.9E-05 32.8 8.8 78 4-90 22-100 (102)
406 cd03019 DsbA_DsbA DsbA family, 93.5 0.12 2.5E-06 41.4 4.4 39 3-43 17-55 (178)
407 cd02978 KaiB_like KaiB-like fa 93.3 0.32 6.9E-06 32.5 5.3 64 3-67 2-65 (72)
408 cd02974 AhpF_NTD_N Alkyl hydro 93.2 1.2 2.7E-05 31.5 8.6 74 120-208 19-92 (94)
409 PF11009 DUF2847: Protein of u 93.1 0.34 7.4E-06 35.0 5.7 64 4-69 22-90 (105)
410 cd03013 PRX5_like Peroxiredoxi 92.6 0.43 9.4E-06 37.4 6.3 55 120-174 29-88 (155)
411 COG1225 Bcp Peroxiredoxin [Pos 92.1 3.3 7.2E-05 32.4 10.4 89 119-208 29-154 (157)
412 cd03013 PRX5_like Peroxiredoxi 91.9 0.34 7.4E-06 38.0 4.9 55 4-59 32-93 (155)
413 PRK10954 periplasmic protein d 91.9 0.19 4.2E-06 41.5 3.6 38 4-43 40-80 (207)
414 cd02974 AhpF_NTD_N Alkyl hydro 91.8 1.6 3.4E-05 31.0 7.7 70 5-89 23-92 (94)
415 cd03031 GRX_GRX_like Glutaredo 91.7 0.47 1E-05 36.7 5.3 51 124-182 2-66 (147)
416 COG1225 Bcp Peroxiredoxin [Pos 91.4 0.51 1.1E-05 36.8 5.2 56 3-60 32-91 (157)
417 TIGR02654 circ_KaiB circadian 89.8 1.4 3E-05 30.6 5.7 75 2-79 3-77 (87)
418 COG1651 DsbG Protein-disulfide 89.5 3.1 6.7E-05 35.1 9.0 38 166-209 205-242 (244)
419 PF01323 DSBA: DSBA-like thior 88.9 3.9 8.5E-05 32.9 8.9 36 167-207 158-193 (193)
420 cd02978 KaiB_like KaiB-like fa 87.6 2.3 5E-05 28.4 5.4 60 123-183 3-62 (72)
421 cd03037 GST_N_GRX2 GST_N famil 87.0 2.6 5.6E-05 27.7 5.6 68 7-88 3-70 (71)
422 cd02977 ArsC_family Arsenate R 86.6 0.55 1.2E-05 34.0 2.3 80 125-212 2-89 (105)
423 TIGR02742 TrbC_Ftype type-F co 86.6 2.9 6.3E-05 31.6 6.2 24 163-186 58-81 (130)
424 cd03060 GST_N_Omega_like GST_N 86.5 2.9 6.3E-05 27.5 5.7 51 125-181 2-53 (71)
425 COG3634 AhpF Alkyl hydroperoxi 86.4 24 0.00052 31.6 13.0 135 56-208 59-196 (520)
426 cd03040 GST_N_mPGES2 GST_N fam 86.2 5.3 0.00011 26.6 7.0 75 5-91 2-76 (77)
427 cd03040 GST_N_mPGES2 GST_N fam 86.1 5.7 0.00012 26.5 7.1 76 124-211 2-77 (77)
428 cd03060 GST_N_Omega_like GST_N 86.0 3 6.5E-05 27.4 5.6 52 6-63 2-54 (71)
429 PRK09301 circadian clock prote 86.0 3.1 6.7E-05 29.9 5.7 74 3-79 7-80 (103)
430 cd03031 GRX_GRX_like Glutaredo 85.9 2.4 5.1E-05 32.9 5.5 51 5-63 2-66 (147)
431 PF13417 GST_N_3: Glutathione 85.0 5.8 0.00012 26.4 6.6 71 8-93 2-73 (75)
432 cd03041 GST_N_2GST_N GST_N fam 84.3 5 0.00011 26.9 6.1 71 5-90 2-76 (77)
433 cd02977 ArsC_family Arsenate R 84.3 1.1 2.4E-05 32.4 2.9 78 6-91 2-87 (105)
434 cd03074 PDI_b'_Calsequestrin_C 83.1 15 0.00033 26.6 8.2 86 4-89 23-118 (120)
435 PF09673 TrbC_Ftype: Type-F co 83.0 3.9 8.5E-05 30.1 5.4 45 137-185 36-80 (113)
436 PF07689 KaiB: KaiB domain; I 83.0 0.8 1.7E-05 31.5 1.6 58 8-66 3-60 (82)
437 COG3019 Predicted metal-bindin 82.2 10 0.00023 28.8 7.3 75 122-210 26-104 (149)
438 cd03041 GST_N_2GST_N GST_N fam 81.5 8.1 0.00017 25.9 6.2 72 124-208 2-75 (77)
439 PRK01655 spxA transcriptional 80.9 2.4 5.3E-05 32.1 3.8 34 5-46 2-35 (131)
440 PF02630 SCO1-SenC: SCO1/SenC; 80.7 5.1 0.00011 32.0 5.8 60 103-163 36-97 (174)
441 cd03036 ArsC_like Arsenate Red 80.6 1.4 2.9E-05 32.4 2.2 80 125-212 2-90 (111)
442 cd03036 ArsC_like Arsenate Red 79.8 2.2 4.8E-05 31.3 3.1 77 6-91 2-88 (111)
443 PHA03075 glutaredoxin-like pro 79.6 2.6 5.7E-05 30.7 3.3 29 121-149 2-30 (123)
444 cd03035 ArsC_Yffb Arsenate Red 79.4 1.7 3.7E-05 31.5 2.4 33 6-46 2-34 (105)
445 cd00570 GST_N_family Glutathio 79.2 2.8 6.1E-05 26.7 3.3 52 125-182 2-55 (71)
446 COG3019 Predicted metal-bindin 78.9 13 0.00029 28.2 6.9 74 4-91 27-104 (149)
447 TIGR02654 circ_KaiB circadian 78.9 9.1 0.0002 26.6 5.7 75 121-198 3-77 (87)
448 cd00570 GST_N_family Glutathio 78.6 2.1 4.5E-05 27.4 2.5 52 6-63 2-55 (71)
449 TIGR01617 arsC_related transcr 78.4 3.1 6.6E-05 30.8 3.6 33 6-46 2-34 (117)
450 PRK09301 circadian clock prote 77.5 10 0.00022 27.3 5.7 76 120-198 5-80 (103)
451 COG2761 FrnE Predicted dithiol 77.3 6 0.00013 32.9 5.2 43 167-214 175-217 (225)
452 COG1999 Uncharacterized protei 76.6 13 0.00028 30.6 7.2 75 108-183 56-137 (207)
453 cd03051 GST_N_GTT2_like GST_N 76.6 9.1 0.0002 25.0 5.3 52 6-63 2-57 (74)
454 cd03068 PDI_b_ERp72 PDIb famil 76.1 22 0.00047 25.7 7.5 77 4-89 22-106 (107)
455 cd03051 GST_N_GTT2_like GST_N 75.5 5.2 0.00011 26.2 3.9 52 125-182 2-57 (74)
456 TIGR01617 arsC_related transcr 75.0 4.8 0.0001 29.7 3.8 77 125-212 2-90 (117)
457 PRK12559 transcriptional regul 74.9 4.6 9.9E-05 30.6 3.7 33 5-45 2-34 (131)
458 KOG2507 Ubiquitin regulatory p 74.7 17 0.00037 33.0 7.6 89 118-208 16-109 (506)
459 COG4545 Glutaredoxin-related p 73.7 5.6 0.00012 26.6 3.3 50 6-63 5-70 (85)
460 COG4545 Glutaredoxin-related p 73.6 6.5 0.00014 26.3 3.6 22 125-146 5-26 (85)
461 TIGR02742 TrbC_Ftype type-F co 73.4 9.7 0.00021 28.8 5.1 45 46-90 60-114 (130)
462 cd03037 GST_N_GRX2 GST_N famil 72.1 11 0.00023 24.7 4.7 50 126-181 3-52 (71)
463 PRK01655 spxA transcriptional 71.3 5 0.00011 30.4 3.2 22 124-145 2-23 (131)
464 COG2761 FrnE Predicted dithiol 71.2 7.3 0.00016 32.4 4.3 43 48-95 175-217 (225)
465 cd03045 GST_N_Delta_Epsilon GS 71.2 14 0.0003 24.2 5.1 51 6-62 2-56 (74)
466 PF09673 TrbC_Ftype: Type-F co 70.1 11 0.00024 27.7 4.7 45 18-66 36-80 (113)
467 cd03045 GST_N_Delta_Epsilon GS 69.8 17 0.00036 23.8 5.3 51 125-181 2-56 (74)
468 cd03032 ArsC_Spx Arsenate Redu 69.7 5.2 0.00011 29.4 2.9 34 5-46 2-35 (115)
469 cd03059 GST_N_SspA GST_N famil 69.4 6.3 0.00014 25.8 3.1 69 6-89 2-71 (73)
470 cd03059 GST_N_SspA GST_N famil 68.8 5.4 0.00012 26.2 2.7 69 125-208 2-71 (73)
471 cd03035 ArsC_Yffb Arsenate Red 68.7 3.4 7.4E-05 29.9 1.7 21 125-145 2-22 (105)
472 PRK13344 spxA transcriptional 68.2 8 0.00017 29.3 3.7 33 5-45 2-34 (132)
473 PF06053 DUF929: Domain of unk 66.2 27 0.00058 29.7 6.7 58 118-185 56-114 (249)
474 PF00837 T4_deiodinase: Iodoth 64.4 36 0.00078 28.6 7.0 29 4-32 105-133 (237)
475 PF13778 DUF4174: Domain of un 64.2 56 0.0012 24.1 8.5 42 167-208 68-110 (118)
476 cd03055 GST_N_Omega GST_N fami 63.2 29 0.00063 23.9 5.6 53 5-63 19-72 (89)
477 KOG2792 Putative cytochrome C 62.2 71 0.0015 27.2 8.3 45 119-163 138-187 (280)
478 KOG2792 Putative cytochrome C 61.7 46 0.001 28.3 7.2 88 3-90 141-274 (280)
479 PRK12559 transcriptional regul 61.1 9.8 0.00021 28.8 3.0 82 124-213 2-90 (131)
480 PF02630 SCO1-SenC: SCO1/SenC; 60.6 29 0.00063 27.6 5.9 41 4-44 55-97 (174)
481 cd03055 GST_N_Omega GST_N fami 60.4 36 0.00078 23.4 5.7 54 123-182 18-72 (89)
482 PRK13730 conjugal transfer pil 60.3 17 0.00037 29.7 4.3 42 164-207 150-191 (212)
483 PHA03075 glutaredoxin-like pro 59.6 9.8 0.00021 27.9 2.6 29 2-30 2-30 (123)
484 COG3531 Predicted protein-disu 59.2 18 0.00039 29.3 4.2 44 166-210 164-209 (212)
485 PF04134 DUF393: Protein of un 56.3 17 0.00037 26.4 3.6 53 127-183 2-56 (114)
486 cd03032 ArsC_Spx Arsenate Redu 55.6 15 0.00033 26.9 3.2 22 124-145 2-23 (115)
487 PF00255 GSHPx: Glutathione pe 55.2 42 0.00091 24.5 5.3 44 118-163 19-62 (108)
488 PF07689 KaiB: KaiB domain; I 55.1 5.9 0.00013 27.3 0.8 54 127-181 3-56 (82)
489 PF04134 DUF393: Protein of un 54.6 19 0.0004 26.2 3.6 56 8-67 2-60 (114)
490 COG5494 Predicted thioredoxin/ 54.0 1.2E+02 0.0027 24.9 10.4 73 126-209 15-87 (265)
491 cd03024 DsbA_FrnE DsbA family, 53.8 14 0.00031 29.8 3.1 36 47-87 165-200 (201)
492 cd03024 DsbA_FrnE DsbA family, 53.7 14 0.00031 29.8 3.1 38 164-206 163-200 (201)
493 PF13778 DUF4174: Domain of un 53.7 88 0.0019 23.1 7.6 77 12-90 21-111 (118)
494 PF04592 SelP_N: Selenoprotein 52.3 24 0.00051 29.5 4.0 43 3-45 28-72 (238)
495 PRK13344 spxA transcriptional 49.5 20 0.00044 27.1 3.1 21 124-144 2-22 (132)
496 COG1331 Highly conserved prote 49.1 30 0.00065 33.7 4.7 64 3-68 45-119 (667)
497 PF01323 DSBA: DSBA-like thior 48.2 28 0.00061 27.8 4.0 27 5-31 2-28 (193)
498 COG1999 Uncharacterized protei 47.2 1.6E+02 0.0035 24.2 12.7 41 170-210 164-204 (207)
499 COG1651 DsbG Protein-disulfide 47.2 39 0.00085 28.4 4.9 27 4-30 87-113 (244)
500 cd03022 DsbA_HCCA_Iso DsbA fam 46.1 28 0.0006 27.8 3.7 24 7-30 3-26 (192)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-42 Score=308.83 Aligned_cols=206 Identities=44% Similarity=0.827 Sum_probs=187.8
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCC-ceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAK-SVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 81 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~ 81 (319)
+++|.||||||+||++++|.|.++|..++..+ .|.+++|||+++.++|.+|+|++|||+.+|++|.. +..|.|.++++
T Consensus 44 ~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~-~~~Y~G~r~ad 122 (493)
T KOG0190|consen 44 FVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRS-AQDYNGPREAD 122 (493)
T ss_pred eEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCc-ceeccCcccHH
Confidence 68999999999999999999999999998763 79999999999999999999999999999999985 69999999999
Q ss_pred HHHHHHHhcCCCCcccc---------------------------------------------------------------
Q 020926 82 ALAEYVNNEGGTNVKIA--------------------------------------------------------------- 98 (319)
Q Consensus 82 ~i~~~i~~~~~~~~~~~--------------------------------------------------------------- 98 (319)
.|+.|+.+++++.....
T Consensus 123 gIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~~ 202 (493)
T KOG0190|consen 123 GIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDYKFAHTSDSDVAKKLELNTEGT 202 (493)
T ss_pred HHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhccccceeeccCcHhHHhhccCCCCCc
Confidence 99999999998876321
Q ss_pred --------------------------------------------------------------------------------
Q 020926 99 -------------------------------------------------------------------------------- 98 (319)
Q Consensus 99 -------------------------------------------------------------------------------- 98 (319)
T Consensus 203 ~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk 282 (493)
T KOG0190|consen 203 FPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAK 282 (493)
T ss_pred ceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------------------------CC---
Q 020926 99 ---------------------------------------------------------------------------AV--- 100 (319)
Q Consensus 99 ---------------------------------------------------------------------------~~--- 100 (319)
+.
T Consensus 283 ~f~~~l~Fi~~d~e~~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~ 362 (493)
T KOG0190|consen 283 KFKGKLRFILIDPESFARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPED 362 (493)
T ss_pred hcccceEEEEEChHHhhHHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCCCCcc
Confidence 11
Q ss_pred -C-CceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCcccc
Q 020926 101 -P-SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 178 (319)
Q Consensus 101 -~-~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P 178 (319)
. +.|..+.++||++++.+.++.|+|.||||||+||+++.|+|++||+.|++.++++++++|++.|+ .....+++||
T Consensus 363 ~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fP 440 (493)
T KOG0190|consen 363 NDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFP 440 (493)
T ss_pred cccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--Cccccccccc
Confidence 1 45999999999999999999999999999999999999999999999999889999999999887 4566788899
Q ss_pred EEEEEeCCCc-CeeecCCCCCHHHHHHHHHHhhC
Q 020926 179 TLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCG 211 (319)
Q Consensus 179 ti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~ 211 (319)
||++|+.|++ .++.|.|.|+.++|..||.++.+
T Consensus 441 TI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 441 TILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred eEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 9999999986 68999999999999999987654
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=2.7e-33 Score=261.32 Aligned_cols=208 Identities=35% Similarity=0.732 Sum_probs=182.2
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 81 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~ 81 (319)
+++|.||||||++|+++.|.|.+++..+... .++.++.|||+++..+|++|+|.++||+++|++|+. .+|.|.++.+
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~--~~y~g~~~~~ 128 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNP--VNYSGGRTAD 128 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCce--EEecCCCCHH
Confidence 5899999999999999999999999988654 379999999999999999999999999999999864 4899999999
Q ss_pred HHHHHHHhcCCCCcccc---------------------------------------------------------------
Q 020926 82 ALAEYVNNEGGTNVKIA--------------------------------------------------------------- 98 (319)
Q Consensus 82 ~i~~~i~~~~~~~~~~~--------------------------------------------------------------- 98 (319)
.|.+|+.+..++.....
T Consensus 129 ~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~~~~~~~~~~~~~~~~~~ 208 (477)
T PTZ00102 129 GIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKDE 208 (477)
T ss_pred HHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceEEEEcCCCCCcEEEEecCC
Confidence 99999887544322100
Q ss_pred --------------------------------------------------------------------------------
Q 020926 99 -------------------------------------------------------------------------------- 98 (319)
Q Consensus 99 -------------------------------------------------------------------------------- 98 (319)
T Consensus 209 ~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~ 288 (477)
T PTZ00102 209 EGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDTE 288 (477)
T ss_pred CCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEecCHHHHHHHHHHHHHHHHhccCceEEEEEech
Confidence
Q ss_pred -------------------------------------------------------------CC----CCceEEcCccChH
Q 020926 99 -------------------------------------------------------------AV----PSNVVVLTADNFD 113 (319)
Q Consensus 99 -------------------------------------------------------------~~----~~~v~~l~~~~f~ 113 (319)
+. ...+..+++++|+
T Consensus 289 ~~~~~~~~~~gi~~~P~~~i~~~~~~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~ 368 (477)
T PTZ00102 289 QFGSHAKEHLLIEEFPGLAYQSPAGRYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFE 368 (477)
T ss_pred hcchhHHHhcCcccCceEEEEcCCcccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchH
Confidence 11 1237778899999
Q ss_pred HHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeec
Q 020926 114 EIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEY 193 (319)
Q Consensus 114 ~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~ 193 (319)
+.+.+.+++++|.||++||++|+.+.|.|++++..++..+.+.++.+|++.++..+.+|+++++||+++|++|++.+..|
T Consensus 369 ~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~ 448 (477)
T PTZ00102 369 EIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPY 448 (477)
T ss_pred HHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEe
Confidence 99878899999999999999999999999999999976667999999999999999999999999999999987777789
Q ss_pred CCCCCHHHHHHHHHHhhCC
Q 020926 194 GGGRDLEDFVSFINEKCGT 212 (319)
Q Consensus 194 ~g~~~~~~l~~~i~~~~~~ 212 (319)
.|.++.++|.+||++++..
T Consensus 449 ~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 449 EGERTVEGFKEFVNKHATN 467 (477)
T ss_pred cCcCCHHHHHHHHHHcCCC
Confidence 9999999999999998753
No 3
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-32 Score=247.45 Aligned_cols=207 Identities=48% Similarity=0.838 Sum_probs=187.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|+||+|||+||+++.|.|.+++..+.+ .+.++.|||+++..+|.+|+|.+|||+.+|.++ ..+..|.|..+.+.
T Consensus 49 ~~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~~~~~~~~~~~ 125 (383)
T KOG0191|consen 49 PWLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPIDYSGPRNAES 125 (383)
T ss_pred ceEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-CceeeccCcccHHH
Confidence 478999999999999999999999999965 799999999999999999999999999999999 56799999999999
Q ss_pred HHHHHHhcCCCCccccCCCCceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeC
Q 020926 83 LAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 162 (319)
Q Consensus 83 i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~ 162 (319)
+..|+.....+...... +..+..++..+|+..+...+..++|.||+|||++|+.+.|.|++++..+.....+.++.+|+
T Consensus 126 ~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~ 204 (383)
T KOG0191|consen 126 LAEFLIKELEPSVKKLV-EGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA 204 (383)
T ss_pred HHHHHHHhhcccccccc-CCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence 99999987766554321 22599999999999998889999999999999999999999999999997667899999999
Q ss_pred ccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhhCCC
Q 020926 163 DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 213 (319)
Q Consensus 163 ~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 213 (319)
+....++.+++|.++||+.+|++|.+....|.|.++.+.+..|+++..+..
T Consensus 205 ~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 205 TVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred chHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 999999999999999999999988653677899999999999999887664
No 4
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.97 E-value=6.7e-30 Score=237.70 Aligned_cols=207 Identities=47% Similarity=0.873 Sum_probs=175.5
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 81 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~ 81 (319)
+++|.||||||++|+++.|.|.++++.+.+. .++.++.|||++++++|++|+|.++||+++|.+|......|.|.++.+
T Consensus 20 ~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 20 FVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred CEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCCHH
Confidence 4789999999999999999999999988753 369999999999999999999999999999998874247888988888
Q ss_pred HHHHHHHhcCCCCcccc---------------------------------------------------------------
Q 020926 82 ALAEYVNNEGGTNVKIA--------------------------------------------------------------- 98 (319)
Q Consensus 82 ~i~~~i~~~~~~~~~~~--------------------------------------------------------------- 98 (319)
+|.+|+.+..++.....
T Consensus 100 ~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (462)
T TIGR01130 100 GIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAFPD 179 (462)
T ss_pred HHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccceEEecCCHHHHhhcCCCCC
Confidence 88888776443221000
Q ss_pred --------------------------------------------------------------------------------
Q 020926 99 -------------------------------------------------------------------------------- 98 (319)
Q Consensus 99 -------------------------------------------------------------------------------- 98 (319)
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 259 (462)
T TIGR01130 180 SVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLE 259 (462)
T ss_pred cEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCCCceeEEEEecCCchHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------------------------------C
Q 020926 99 -------------------------------------------------------------------------------A 99 (319)
Q Consensus 99 -------------------------------------------------------------------------------~ 99 (319)
+
T Consensus 260 ~a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~ 339 (462)
T TIGR01130 260 AAKKFRGKFVNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEP 339 (462)
T ss_pred HHHHCCCCeEEEEEecHHHhHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCC
Confidence 1
Q ss_pred C----CCceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcC-CCCeEEEEEeCccchhhHhhcCC
Q 020926 100 V----PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDADKYKDLAEKYGV 174 (319)
Q Consensus 100 ~----~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~-~~~~~~~~vd~~~~~~l~~~~~v 174 (319)
. ...+..++..+|.+.+.+.+++++|.||++||++|+.+.|.++++++.++. +..+.++.+|++.++ +.. +++
T Consensus 340 ~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i 417 (462)
T TIGR01130 340 IPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEV 417 (462)
T ss_pred CCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCc
Confidence 1 235778888999998878899999999999999999999999999999975 337999999999775 444 999
Q ss_pred ccccEEEEEeCCCc-CeeecCCCCCHHHHHHHHHHhhC
Q 020926 175 SGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCG 211 (319)
Q Consensus 175 ~~~Pti~~~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~ 211 (319)
.++||+++|++|++ .+..|.|.++.+.|.+||.++..
T Consensus 418 ~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 418 EGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred cccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 99999999998876 56789999999999999998763
No 5
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.97 E-value=3.5e-30 Score=214.38 Aligned_cols=189 Identities=23% Similarity=0.309 Sum_probs=153.3
Q ss_pred eEEEEEc---CCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCCh
Q 020926 4 NAFCVKC---DRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 80 (319)
Q Consensus 4 ~~v~Fya---~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~ 80 (319)
.++.|++ +||++|+.+.|.++++++.+.. -.+.++.+|.+++++++++|+|.++||+++|++|.....++.|..+.
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~-~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~ 100 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPK-LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAG 100 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC-ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCH
Confidence 4667888 9999999999999999998842 23667777777999999999999999999999987544588999999
Q ss_pred HHHHHHHHhcCCCCccccCCCCceEEcCccChHHHhhcCCCc-EEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEE
Q 020926 81 EALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKD-VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 159 (319)
Q Consensus 81 ~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~-v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~ 159 (319)
+.+.+|++...+.... ...++..+.+.+. ...++ +++.||++||++|+.+.|.+++++... +++.+..
T Consensus 101 ~~l~~~i~~~~~~~~~-------~~~L~~~~~~~l~-~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~---~~i~~~~ 169 (215)
T TIGR02187 101 YEFAALIEDIVRVSQG-------EPGLSEKTVELLQ-SLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN---DKILGEM 169 (215)
T ss_pred HHHHHHHHHHHHhcCC-------CCCCCHHHHHHHH-hcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc---CceEEEE
Confidence 9999999876432111 1244544455544 33444 555599999999999999999998874 5788999
Q ss_pred EeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHH
Q 020926 160 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 208 (319)
Q Consensus 160 vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~ 208 (319)
+|.+.+++++++|+|.++||++++.+|. .+.|..+.++|.+||.+
T Consensus 170 vD~~~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 170 IEANENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred EeCCCCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 9999999999999999999999986552 38899999999999875
No 6
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.90 E-value=5.3e-23 Score=169.40 Aligned_cols=182 Identities=23% Similarity=0.444 Sum_probs=133.2
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCC-ceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAK-SVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 81 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~-~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~ 81 (319)
+++|+||||||+||+++.|.|+++..++++.+ +|.+++.||+.-+.++.+|+|++|||+.+|+++ ..+.|.|+++.+
T Consensus 45 iW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd--~a~dYRG~R~Kd 122 (468)
T KOG4277|consen 45 IWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD--HAIDYRGGREKD 122 (468)
T ss_pred eEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC--eeeecCCCccHH
Confidence 58999999999999999999999999998754 899999999999999999999999999999988 458999999999
Q ss_pred HHHHHHHhcCCCCccccCCCCceEEcCccC--hHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEE
Q 020926 82 ALAEYVNNEGGTNVKIAAVPSNVVVLTADN--FDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 159 (319)
Q Consensus 82 ~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~--f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~ 159 (319)
+|+.|..+-+++-+. .++..+ |..+ ...+++.+|.|.+... .+...+...|.+ .+.+++
T Consensus 123 ~iieFAhR~a~aiI~---------pi~enQ~~fehl-q~Rhq~ffVf~Gtge~----PL~d~fidAASe-----~~~~a~ 183 (468)
T KOG4277|consen 123 AIIEFAHRCAAAIIE---------PINENQIEFEHL-QARHQPFFVFFGTGEG----PLFDAFIDAASE-----KFSVAR 183 (468)
T ss_pred HHHHHHHhcccceee---------ecChhHHHHHHH-hhccCceEEEEeCCCC----cHHHHHHHHhhh-----heeeee
Confidence 999999987765332 244323 3333 3677888888886632 233444444443 234443
Q ss_pred EeCccchhhHhhc-CCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHh
Q 020926 160 LDADKYKDLAEKY-GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 160 vd~~~~~~l~~~~-~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 209 (319)
.=. ..++++-.+ .....|.+.+|++.. .......+.+++.+||++.
T Consensus 184 FfS-aseeVaPe~~~~kempaV~VFKDet---f~i~de~dd~dLseWinRE 230 (468)
T KOG4277|consen 184 FFS-ASEEVAPEENDAKEMPAVAVFKDET---FEIEDEGDDEDLSEWINRE 230 (468)
T ss_pred eec-cccccCCcccchhhccceEEEccce---eEEEecCchhHHHHHHhHh
Confidence 321 122233333 345689999998762 2333345688999999864
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.89 E-value=1.8e-22 Score=149.27 Aligned_cols=103 Identities=19% Similarity=0.316 Sum_probs=92.8
Q ss_pred CCceEEcCccChHHHh--hcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhH-hhcCCccc
Q 020926 101 PSNVVVLTADNFDEIV--LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA-EKYGVSGF 177 (319)
Q Consensus 101 ~~~v~~l~~~~f~~~~--~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~-~~~~v~~~ 177 (319)
.+.|.+++.++|++.+ ...++.++|.||||||++|+.+.|.|+++|+.++ +.+.+++||++.+.+++ ++|+|.++
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~--~~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS--DQVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEECCCChHHHHHhcCCccc
Confidence 4679999999999873 4788999999999999999999999999999995 45899999999999999 58999999
Q ss_pred cEEEEEeCCCcCeeecCCCCCHHHHHHHH
Q 020926 178 PTLKFFPKGNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 178 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i 206 (319)
||+.+|.+|. .+..|.|.++.+.|..|+
T Consensus 86 PTl~lf~~g~-~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSR-GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCc-cceEEeCCCCHHHHHhhC
Confidence 9999998774 678899999999999874
No 8
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=99.88 E-value=1e-22 Score=144.95 Aligned_cols=95 Identities=41% Similarity=0.667 Sum_probs=86.6
Q ss_pred cchhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhccCChhh
Q 020926 225 GIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAK 304 (319)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~~~~~~ 304 (319)
|+++++|.++..|+.+..+.+.++++++++.+..+++....+++||+++|+||+++|.+|+++|++||++||+++++++|
T Consensus 1 G~i~~lD~la~~f~~~~~~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E~~RL~~lL~~~l~~~K 80 (95)
T PF07749_consen 1 GRIEELDELAAEFVAASDDEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKEIARLERLLEGKLSPEK 80 (95)
T ss_dssp T--HHHHHHHHHHHHS-CHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHHHHHHHHHHHSSS-HHH
T ss_pred CchHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHHHHHHHHHHhccCCHHH
Confidence 68999999999999998888999999999999999887779999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhccccC
Q 020926 305 ADEFVLKKNILSTFT 319 (319)
Q Consensus 305 ~~~~~~~~nil~~f~ 319 (319)
+|+|+.|+|||++|.
T Consensus 81 ~del~~R~NIL~~F~ 95 (95)
T PF07749_consen 81 KDELQKRLNILSSFQ 95 (95)
T ss_dssp HHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999995
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.88 E-value=4.9e-22 Score=146.48 Aligned_cols=102 Identities=34% Similarity=0.774 Sum_probs=93.9
Q ss_pred ceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEE
Q 020926 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~ 182 (319)
.+.+++.++|++.+.+++++++|.||++||++|+.+.|.|+++++.+. +.+.++.+|++.+++++++|+|.++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALK--GKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 467899999999987778899999999999999999999999999984 469999999999999999999999999999
Q ss_pred EeCCCcCeeecCCCCC-HHHHHHHH
Q 020926 183 FPKGNKDGEEYGGGRD-LEDFVSFI 206 (319)
Q Consensus 183 ~~~g~~~~~~~~g~~~-~~~l~~~i 206 (319)
|.+|++....|.|..+ .++|.+||
T Consensus 80 ~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCCCceEccCCCCCHHHHHhhC
Confidence 9998678889999987 99999885
No 10
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.4e-22 Score=150.28 Aligned_cols=105 Identities=30% Similarity=0.578 Sum_probs=96.6
Q ss_pred ceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEE
Q 020926 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~ 182 (319)
.+..++..+|++.+.+++.||+|+|||+||+||+.+.|.+++++..|. +.+.++++|.|++.+++.+|+|.++||+++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhc--CeEEEEEEccccccchHhhcceeeeeEEEE
Confidence 455678899999999999999999999999999999999999999995 679999999999999999999999999999
Q ss_pred EeCCCcCeeecCCCCCHHHHHHHHHHhh
Q 020926 183 FPKGNKDGEEYGGGRDLEDFVSFINEKC 210 (319)
Q Consensus 183 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 210 (319)
|++| +....+.|..+.+.+.+||++..
T Consensus 122 fknG-e~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 122 FKNG-EKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred EECC-EEeeeecccCCHHHHHHHHHHHh
Confidence 9988 45678999999999999999865
No 11
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.87 E-value=6.4e-22 Score=146.81 Aligned_cols=103 Identities=39% Similarity=0.721 Sum_probs=93.0
Q ss_pred ceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCC----CCeEEEEEeCccchhhHhhcCCcccc
Q 020926 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE----DDVVVANLDADKYKDLAEKYGVSGFP 178 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~----~~~~~~~vd~~~~~~l~~~~~v~~~P 178 (319)
.+.++++++|++.+ ..+++++|.||+|||++|+.+.|.|+++++.++.. +.+.++.+|++.+.+++++|+|+++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 57889999999987 77889999999999999999999999999887432 35899999999999999999999999
Q ss_pred EEEEEeCCCcCeeecCCCCCHHHHHHHH
Q 020926 179 TLKFFPKGNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 179 ti~~~~~g~~~~~~~~g~~~~~~l~~~i 206 (319)
|+++|++|......|.|.++.++|.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999998865568899999999999985
No 12
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.86 E-value=2.3e-21 Score=144.20 Aligned_cols=107 Identities=17% Similarity=0.210 Sum_probs=95.6
Q ss_pred CceEEcCccChHHHhhcCCCcEEEEEECCCCcc--cc--chHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccc
Q 020926 102 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGH--CK--NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF 177 (319)
Q Consensus 102 ~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~--C~--~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~ 177 (319)
..+..+|.+||++.+.+++.++++.||++||+| |+ .+.|.+.++|..+-..+++.+++||++.+++++++|+|.++
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~i 88 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEE 88 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccc
Confidence 468889999999999888899999999999988 99 88999999999874345799999999999999999999999
Q ss_pred cEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhh
Q 020926 178 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 210 (319)
Q Consensus 178 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 210 (319)
||+++|++|. ...|.|.++.+.|.+||.+..
T Consensus 89 PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 89 DSIYVFKDDE--VIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cEEEEEECCE--EEEeeCCCCHHHHHHHHHHHh
Confidence 9999999884 345999999999999998753
No 13
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.86 E-value=2.2e-21 Score=142.13 Aligned_cols=99 Identities=32% Similarity=0.677 Sum_probs=90.7
Q ss_pred ceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEE
Q 020926 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~ 182 (319)
.+.+++.++|+..+ ..+++++|.||++||++|+.+.|.|+++++.+. +.+.|+.||+++++.++++|+|+++||+++
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD--GVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc--CceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 57789999999998 666999999999999999999999999999996 458999999999999999999999999999
Q ss_pred EeCCCcCeeecCCCCCHHHHHHH
Q 020926 183 FPKGNKDGEEYGGGRDLEDFVSF 205 (319)
Q Consensus 183 ~~~g~~~~~~~~g~~~~~~l~~~ 205 (319)
|++| +.+..|.|.++.+.|.+|
T Consensus 79 ~~~g-~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSG-MNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EcCC-CCcccCCCCCCHHHHHhh
Confidence 9877 457789999999999887
No 14
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.86 E-value=1.2e-21 Score=144.90 Aligned_cols=82 Identities=16% Similarity=0.350 Sum_probs=75.2
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhh-hhcCCCcCCeEEeccCCCCCCcccCCCCChH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC-SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 81 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~-~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~ 81 (319)
+++|+||||||+||+.+.|.|+++++.+++ .+.|++|||+++..+| ++|+|.++||+++|++|. .+.+|.|.++.+
T Consensus 31 ~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~-~~~~y~G~~~~~ 107 (113)
T cd03006 31 VSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR-GPIEYKGPMRAP 107 (113)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc-cceEEeCCCCHH
Confidence 589999999999999999999999999954 5999999999999999 589999999999998887 458899999999
Q ss_pred HHHHHH
Q 020926 82 ALAEYV 87 (319)
Q Consensus 82 ~i~~~i 87 (319)
.|..|+
T Consensus 108 ~i~~~~ 113 (113)
T cd03006 108 YMEKFV 113 (113)
T ss_pred HHHhhC
Confidence 999874
No 15
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.86 E-value=5.5e-21 Score=140.53 Aligned_cols=103 Identities=41% Similarity=0.829 Sum_probs=95.2
Q ss_pred eEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEE
Q 020926 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 183 (319)
Q Consensus 104 v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~ 183 (319)
|..+|.++|++.+.+++++++|.||++||++|+.+.|.|.++++.+.. ++.++.+|++.+++++++|+|.++||+++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 467899999999966689999999999999999999999999999964 899999999999999999999999999999
Q ss_pred eCCCcCeeecCCCCCHHHHHHHHHHh
Q 020926 184 PKGNKDGEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 184 ~~g~~~~~~~~g~~~~~~l~~~i~~~ 209 (319)
.+|. ....|.|.++.+.|.+||++|
T Consensus 79 ~~g~-~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGK-EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTE-EEEEEESSSSHHHHHHHHHHH
T ss_pred ECCc-EEEEEECCCCHHHHHHHHHcC
Confidence 9885 555899999999999999875
No 16
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.8e-22 Score=177.66 Aligned_cols=117 Identities=44% Similarity=0.828 Sum_probs=107.1
Q ss_pred CCCceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCC-CCeEEEEEeCccchhhHhhcCCcccc
Q 020926 100 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFP 178 (319)
Q Consensus 100 ~~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~-~~~~~~~vd~~~~~~l~~~~~v~~~P 178 (319)
.++.|..|+.++|+..+ ..+..++|.||||||+||+.+.|.+.+.|..+... +.+.+++|||+.+.++|.+|+|++||
T Consensus 23 ~~~~Vl~Lt~dnf~~~i-~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETI-NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHHHh-ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 56789999999999999 88889999999999999999999999999998765 47999999999999999999999999
Q ss_pred EEEEEeCCCcCeeecCCCCCHHHHHHHHHHhhCCCCCCCC
Q 020926 179 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG 218 (319)
Q Consensus 179 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~ 218 (319)
|+.+|++|.. +..|.|.++.+.|+.|+++..|+......
T Consensus 102 TlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~ 140 (493)
T KOG0190|consen 102 TLKIFRNGRS-AQDYNGPREADGIVKWLKKQSGPASKTLK 140 (493)
T ss_pred eEEEEecCCc-ceeccCcccHHHHHHHHHhccCCCceecc
Confidence 9999999964 78999999999999999999887655433
No 17
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=99.85 E-value=6.9e-21 Score=134.26 Aligned_cols=92 Identities=42% Similarity=0.728 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHhccchhHHHHHHHHHHhhhhhcchhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhcc-CChhhh
Q 020926 227 VASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKS-ISAAKA 305 (319)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~-~~~~~~ 305 (319)
++.+|.++..|+.++++.+..+++++++.+..+++...++++||+++|+|++++|.+|+.+|++||++||+++ ++++|+
T Consensus 1 i~~lD~la~~f~~~~~~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~ 80 (93)
T cd00238 1 IEELDELAKEFVDASDEERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKELARLERLLEKKGLAPEKA 80 (93)
T ss_pred ChhHHHHHHHHhccchhHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3578999999999887888999999999999998777899999999999999999999999999999999985 699999
Q ss_pred hhHHHhhhhcccc
Q 020926 306 DEFVLKKNILSTF 318 (319)
Q Consensus 306 ~~~~~~~nil~~f 318 (319)
|+|+.|+|||++|
T Consensus 81 del~~R~NIL~~F 93 (93)
T cd00238 81 DELTRRLNILRSF 93 (93)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999998
No 18
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.85 E-value=2.1e-20 Score=154.34 Aligned_cols=189 Identities=24% Similarity=0.434 Sum_probs=135.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcC---CceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKA---KSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 79 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~---~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~ 79 (319)
+++|.|||+||+.++.+.|.|+++|+.++.+ +++.++.|||+.+..++.+|.|..|||+.+|.+|.....+|.|.|+
T Consensus 15 lvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~Rs 94 (375)
T KOG0912|consen 15 LVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRS 94 (375)
T ss_pred EEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchh
Confidence 6899999999999999999999999888763 5899999999999999999999999999999999877679999999
Q ss_pred hHHHHHHHHhcCCCCccccCCCCceEEc-CccChHHHhhcCCCcEEEEEEC-CCCccccchHHHHHHHHHHhcCCCCeEE
Q 020926 80 TEALAEYVNNEGGTNVKIAAVPSNVVVL-TADNFDEIVLDKSKDVLVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVV 157 (319)
Q Consensus 80 ~~~i~~~i~~~~~~~~~~~~~~~~v~~l-~~~~f~~~~~~~~~~v~v~F~~-~wC~~C~~~~~~~~~la~~~~~~~~~~~ 157 (319)
.+++.+||+.+...++. +. +-.++.... ..++..+|.++- .-. .....+.++|..++.+-.+.+
T Consensus 95 VeaL~efi~kq~s~~i~---------Ef~sl~~l~n~~-~p~K~~vIgyF~~kds----pey~~~~kva~~lr~dc~f~V 160 (375)
T KOG0912|consen 95 VEALIEFIEKQLSDPIN---------EFESLDQLQNLD-IPSKRTVIGYFPSKDS----PEYDNLRKVASLLRDDCVFLV 160 (375)
T ss_pred HHHHHHHHHHHhccHHH---------HHHhHHHHHhhh-ccccceEEEEeccCCC----chHHHHHHHHHHHhhccEEEe
Confidence 99999999998764332 11 112233333 334445554444 322 223467888888875444444
Q ss_pred EEEeCccchhhHhhcCCccccEEEEEeCCCcCe-eecCCC-CCHHHHHHHHHHhhCC
Q 020926 158 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGG-RDLEDFVSFINEKCGT 212 (319)
Q Consensus 158 ~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~-~~~~g~-~~~~~l~~~i~~~~~~ 212 (319)
+.-|.. ....-.+-| +++|+++...+ ..|.|. .+.+.+..||.+.|-+
T Consensus 161 ~~gD~~------~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvp 210 (375)
T KOG0912|consen 161 GFGDLL------KPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVP 210 (375)
T ss_pred eccccc------cCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchh
Confidence 332322 111122333 45666554433 368887 4699999999998744
No 19
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.84 E-value=1.7e-20 Score=137.76 Aligned_cols=102 Identities=23% Similarity=0.461 Sum_probs=83.6
Q ss_pred ceEEcCccChHHHhhcCCCcEEEEEEC--CCCccccchHHHHHHHHHHhcC-CCCeEEEEEeC-----ccchhhHhhcCC
Q 020926 103 NVVVLTADNFDEIVLDKSKDVLVEFYA--PWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDA-----DKYKDLAEKYGV 174 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~~~~~~v~v~F~~--~wC~~C~~~~~~~~~la~~~~~-~~~~~~~~vd~-----~~~~~l~~~~~v 174 (319)
.+..|+..||++.+ ..++.++|.||| |||+ + .|.+.+||.++.. ...+.+++||| .++.+||++|+|
T Consensus 2 g~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 2 GCVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred CeeECChhhHHHHH-hcCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCC
Confidence 46789999999998 788899999999 7777 2 3555555555422 23599999999 467889999999
Q ss_pred c--cccEEEEEeCCC-cCeeecCCC-CCHHHHHHHHHHh
Q 020926 175 S--GFPTLKFFPKGN-KDGEEYGGG-RDLEDFVSFINEK 209 (319)
Q Consensus 175 ~--~~Pti~~~~~g~-~~~~~~~g~-~~~~~l~~~i~~~ 209 (319)
+ +|||+.+|++|. ..+..|.|. ++.++|++||+++
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9 999999999884 367889996 9999999999875
No 20
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.84 E-value=3.6e-20 Score=135.73 Aligned_cols=100 Identities=36% Similarity=0.665 Sum_probs=88.7
Q ss_pred ceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEE
Q 020926 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~ 182 (319)
.|.+++.++|++.+ . + .++|.||++||++|+.+.|.|++++..++ ..++.++.+|+++++.++++|+|.++||+++
T Consensus 2 ~v~~l~~~~f~~~~-~-~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~-~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVL-E-G-EWMIEFYAPWCPACQQLQPEWEEFADWSD-DLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHh-C-C-CEEEEEECCCCHHHHHHhHHHHHHHHhhc-cCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 57889999999987 3 2 38999999999999999999999999864 2369999999999999999999999999999
Q ss_pred EeCCCcCeeecCCCCCHHHHHHHHHH
Q 020926 183 FPKGNKDGEEYGGGRDLEDFVSFINE 208 (319)
Q Consensus 183 ~~~g~~~~~~~~g~~~~~~l~~~i~~ 208 (319)
|++|. ...|.|.++.++|.+||++
T Consensus 78 ~~~g~--~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGV--FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCC--EEEecCCCCHHHHHHHHhC
Confidence 98773 5789999999999999863
No 21
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.84 E-value=2.9e-20 Score=138.21 Aligned_cols=101 Identities=50% Similarity=0.872 Sum_probs=92.3
Q ss_pred eEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc--chhhHhhcCCccccEEE
Q 020926 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLK 181 (319)
Q Consensus 104 v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pti~ 181 (319)
+.+++.++|++.+.+.+++++|.||++||++|+.+.|.|+++++.+. +.+.++.+|++. +.+++++|+|.++||++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~--~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD--GLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhc--CCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 67899999999997788889999999999999999999999999985 468899999998 88999999999999999
Q ss_pred EEeCCC----cCeeecCCCCCHHHHHHHH
Q 020926 182 FFPKGN----KDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 182 ~~~~g~----~~~~~~~g~~~~~~l~~~i 206 (319)
+|++|+ .....|.|.++.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 999886 3567899999999999997
No 22
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.7e-20 Score=169.58 Aligned_cols=183 Identities=37% Similarity=0.673 Sum_probs=145.7
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHH
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 83 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i 83 (319)
++|.||+|||+||+.+.|.|++++..++....+.++.+||+....+|.+++|++|||+.+|.++......|.|.++.+.|
T Consensus 165 ~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i 244 (383)
T KOG0191|consen 165 WLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSI 244 (383)
T ss_pred eEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHH
Confidence 68999999999999999999999999976567999999999999999999999999999999988635778899999999
Q ss_pred HHHHHhcCCCCccccC-----CCC-ceEE-cCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHH-hcCCCCe
Q 020926 84 AEYVNNEGGTNVKIAA-----VPS-NVVV-LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDV 155 (319)
Q Consensus 84 ~~~i~~~~~~~~~~~~-----~~~-~v~~-l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~-~~~~~~~ 155 (319)
..|+....+....+.. .++ .... ++.++|.... ......++.|+++||++|....|.+...+.. +.....+
T Consensus 245 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (383)
T KOG0191|consen 245 VSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSL-EKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKI 323 (383)
T ss_pred HHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhh-HHhhhhHhhhhcchhhcccccchhHHHHHhccccccccc
Confidence 9999997766421110 110 0011 1112222222 3446789999999999999999999999988 2233568
Q ss_pred EEEEEeCccchhhHhhcCCccccEEEEEeCCC
Q 020926 156 VVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 187 (319)
Q Consensus 156 ~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~ 187 (319)
.+.++++.....+|.+..++.+|++.++..+.
T Consensus 324 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (383)
T KOG0191|consen 324 KAAKLDCALLKSLCQKAIVRGYPTIKLYNYGK 355 (383)
T ss_pred eeeccccccccchhhHhhhhcCceeEeecccc
Confidence 89999999777799999999999999997664
No 23
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.83 E-value=4.6e-20 Score=136.88 Aligned_cols=103 Identities=30% Similarity=0.690 Sum_probs=90.9
Q ss_pred ceEEcCccChHHHhh--cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc-chhhHh-hcCCcccc
Q 020926 103 NVVVLTADNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAE-KYGVSGFP 178 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~--~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~-~~~l~~-~~~v~~~P 178 (319)
.|.+++.++|+.++. ..+++++|.||++||++|+.+.|.|.+++..++. .++.++.||++. +..++. .|+|+++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 478899999999884 3578999999999999999999999999999973 369999999997 577886 49999999
Q ss_pred EEEEEeCCCcCeeecCCC-CCHHHHHHHH
Q 020926 179 TLKFFPKGNKDGEEYGGG-RDLEDFVSFI 206 (319)
Q Consensus 179 ti~~~~~g~~~~~~~~g~-~~~~~l~~~i 206 (319)
|+++|++|+..+..|.|. ++.++|.+||
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999887788899995 8999999985
No 24
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.83 E-value=2.8e-20 Score=138.02 Aligned_cols=85 Identities=36% Similarity=0.685 Sum_probs=76.9
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcC----CceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKA----KSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR 78 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~----~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~ 78 (319)
.++|.||||||++|+++.|.|+++++.+++. +.+.++.|||+++.++|++|+|+++||+++|++|......|.|.+
T Consensus 20 ~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~ 99 (108)
T cd02996 20 LVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQR 99 (108)
T ss_pred EEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcCcceecCCCC
Confidence 4799999999999999999999999887532 259999999999999999999999999999998875568899999
Q ss_pred ChHHHHHHH
Q 020926 79 STEALAEYV 87 (319)
Q Consensus 79 ~~~~i~~~i 87 (319)
+.++|.+|+
T Consensus 100 ~~~~l~~fi 108 (108)
T cd02996 100 SVEALAEFV 108 (108)
T ss_pred CHHHHHhhC
Confidence 999999985
No 25
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.83 E-value=4.2e-20 Score=135.31 Aligned_cols=81 Identities=35% Similarity=0.776 Sum_probs=75.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|+||||||++|+.+.|.|+++++.+++ .+.|+.|||++++.+|++++|+++||+++|++|. ...+|.|.++.++
T Consensus 20 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~~~ 96 (101)
T cd03003 20 IWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGM-NPEKYYGDRSKES 96 (101)
T ss_pred eEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCC-CcccCCCCCCHHH
Confidence 589999999999999999999999999864 5999999999999999999999999999998886 4588999999999
Q ss_pred HHHH
Q 020926 83 LAEY 86 (319)
Q Consensus 83 i~~~ 86 (319)
|.+|
T Consensus 97 l~~f 100 (101)
T cd03003 97 LVKF 100 (101)
T ss_pred HHhh
Confidence 9887
No 26
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.82 E-value=9e-20 Score=134.11 Aligned_cols=101 Identities=51% Similarity=0.883 Sum_probs=93.0
Q ss_pred eEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEE
Q 020926 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 183 (319)
Q Consensus 104 v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~ 183 (319)
+.++++++|.+.+.+.+++++|.||++||++|+.+.|.|.++++.+. +.+.++.+|++.+++++++|+|+++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALK--GIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 67889999999987777789999999999999999999999999985 4689999999999999999999999999999
Q ss_pred eCCCcCeeecCCCCCHHHHHHHH
Q 020926 184 PKGNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 184 ~~g~~~~~~~~g~~~~~~l~~~i 206 (319)
++|......|.|.++.++|.+|+
T Consensus 80 ~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecCCCCCHHHHHHHh
Confidence 98866788899999999999996
No 27
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.2e-19 Score=148.51 Aligned_cols=108 Identities=31% Similarity=0.636 Sum_probs=98.3
Q ss_pred CceEEcCccChHHHhhc--CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccE
Q 020926 102 SNVVVLTADNFDEIVLD--KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 179 (319)
Q Consensus 102 ~~v~~l~~~~f~~~~~~--~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt 179 (319)
..+.++|..||...+.. ...||+|+||+|||++|+.+.|.+++++.+++ +.+.+++||||.+++++.+|||+++||
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~--G~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK--GKFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC--CceEEEEecCCcchhHHHHhCcCcCCe
Confidence 34899999999988853 34699999999999999999999999999996 689999999999999999999999999
Q ss_pred EEEEeCCCcCeeecCCCCCHHHHHHHHHHhhCC
Q 020926 180 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 212 (319)
Q Consensus 180 i~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~ 212 (319)
++.|.+|. .+.-|.|....+.+..||.++.+.
T Consensus 101 V~af~dGq-pVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQ-PVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCc-CccccCCCCcHHHHHHHHHHhcCh
Confidence 99999984 566799999999999999998765
No 28
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.82 E-value=4.1e-20 Score=136.20 Aligned_cols=83 Identities=29% Similarity=0.614 Sum_probs=76.2
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCC-hH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS-TE 81 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~-~~ 81 (319)
.++|+|||+||++|+.+.|.|+++++.+.+ .+.++.|||++++++|++|+|+++||+++|++|+....+|.|..+ .+
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~ 98 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDAD 98 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHH
Confidence 479999999999999999999999999843 599999999999999999999999999999998556789999987 99
Q ss_pred HHHHHH
Q 020926 82 ALAEYV 87 (319)
Q Consensus 82 ~i~~~i 87 (319)
+|.+|+
T Consensus 99 ~l~~~i 104 (104)
T cd03004 99 SILEFI 104 (104)
T ss_pred HHHhhC
Confidence 998885
No 29
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.82 E-value=1.1e-19 Score=133.89 Aligned_cols=102 Identities=54% Similarity=1.029 Sum_probs=92.5
Q ss_pred eEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEE
Q 020926 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 183 (319)
Q Consensus 104 v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~ 183 (319)
|.++++++|++.+.+.+++++|.||++||++|+.+.|.|.++++.++...++.++.+|++.+ +++..+++.++||+++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 67899999999987777999999999999999999999999999997656799999999987 58889999999999999
Q ss_pred eCCC-cCeeecCCCCCHHHHHHHH
Q 020926 184 PKGN-KDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 184 ~~g~-~~~~~~~g~~~~~~l~~~i 206 (319)
++|. .....|.|..+.++|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 9886 3677899999999999986
No 30
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.82 E-value=1.2e-19 Score=133.90 Aligned_cols=103 Identities=72% Similarity=1.224 Sum_probs=94.3
Q ss_pred eEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc-chhhHhhcCCccccEEEE
Q 020926 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 104 v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~-~~~l~~~~~v~~~Pti~~ 182 (319)
+.++++++|+..+.+.+++++|.||++||++|+.+.|.|.++++.+...+.+.++.+|++. +++++++|+|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678999999988666779999999999999999999999999998755679999999999 999999999999999999
Q ss_pred EeCCCcCeeecCCCCCHHHHHHHH
Q 020926 183 FPKGNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 183 ~~~g~~~~~~~~g~~~~~~l~~~i 206 (319)
|.+|+.....|.|.++.++|.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 998877788899999999999985
No 31
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.82 E-value=7.3e-19 Score=145.10 Aligned_cols=110 Identities=35% Similarity=0.721 Sum_probs=96.4
Q ss_pred CCceEEcCccChHHHhhcC----CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCcc
Q 020926 101 PSNVVVLTADNFDEIVLDK----SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG 176 (319)
Q Consensus 101 ~~~v~~l~~~~f~~~~~~~----~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~ 176 (319)
++.+.++++++|++.+... +++++|.||+|||++|+.+.|.|+++++.++ +.+.++.+|++.+++++++|+|++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~--~~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALK--GQVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcC--CCeEEEEecCcccHHHHHHcCCCc
Confidence 4679999999999988533 5799999999999999999999999999986 468999999999999999999999
Q ss_pred ccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhhCCC
Q 020926 177 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 213 (319)
Q Consensus 177 ~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 213 (319)
+||+++|++| +....+.|.++.+++.+|+.+.....
T Consensus 107 ~PTl~~f~~G-~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 107 YPTLLLFDKG-KMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CCEEEEEECC-EEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 9999999977 34445678899999999999887433
No 32
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.81 E-value=4.7e-20 Score=134.24 Aligned_cols=80 Identities=26% Similarity=0.495 Sum_probs=73.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecc-cchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 81 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~ 81 (319)
.++|+|||+||++|+.+.|.|+++++.+.+ +.++.||++ +++.++++|+|.++||+++|++| ...+|.|.++.+
T Consensus 20 ~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~~~ 94 (100)
T cd02999 20 YTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRTLD 94 (100)
T ss_pred EEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCCHH
Confidence 479999999999999999999999999853 889999999 88999999999999999999988 458999999999
Q ss_pred HHHHHH
Q 020926 82 ALAEYV 87 (319)
Q Consensus 82 ~i~~~i 87 (319)
+|.+|+
T Consensus 95 ~l~~f~ 100 (100)
T cd02999 95 SLAAFY 100 (100)
T ss_pred HHHhhC
Confidence 999885
No 33
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.81 E-value=2.2e-19 Score=131.75 Aligned_cols=101 Identities=66% Similarity=1.157 Sum_probs=92.7
Q ss_pred cCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCC
Q 020926 107 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 186 (319)
Q Consensus 107 l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g 186 (319)
|++++|+..+ ..+++++|.||++||++|+.+.|.|++++..+...+++.++.+|++.+..++++|+|.++|++++|++|
T Consensus 1 l~~~~~~~~~-~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIV-LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHh-ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 4678899988 488999999999999999999999999999997655799999999999999999999999999999988
Q ss_pred CcCeeecCCCCCHHHHHHHHHHh
Q 020926 187 NKDGEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 187 ~~~~~~~~g~~~~~~l~~~i~~~ 209 (319)
+. +..|.|..+.++|..||.++
T Consensus 80 ~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred Cc-ceeecCCCCHHHHHHHHHhc
Confidence 65 88899999999999999875
No 34
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.81 E-value=1.9e-19 Score=132.12 Aligned_cols=100 Identities=41% Similarity=0.875 Sum_probs=89.2
Q ss_pred eEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcC-CCCeEEEEEeCccchhhHhhcCCccccEEEE
Q 020926 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDADKYKDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 104 v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~-~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~ 182 (319)
+..++.++|+..+ ..+ .++|.||++||++|+.+.|.|.++++.++. ...+.++.+|++.+..++++|+|.++||+++
T Consensus 2 ~~~l~~~~f~~~~-~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHI-AEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHh-hcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 5788999999998 333 599999999999999999999999999975 3479999999999999999999999999999
Q ss_pred EeCCCcCeeecCCCCCHHHHHHHH
Q 020926 183 FPKGNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 183 ~~~g~~~~~~~~g~~~~~~l~~~i 206 (319)
|++|. ....|.|.++.++|.+||
T Consensus 80 ~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCC-eeeEeeCCCCHHHHHhhC
Confidence 98774 677899999999998885
No 35
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.80 E-value=2e-19 Score=130.90 Aligned_cols=84 Identities=26% Similarity=0.616 Sum_probs=77.5
Q ss_pred cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc-cchhhHhhcCCccccEEEEEeCCCcCeeecCCC
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 196 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~-~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~ 196 (319)
.++++++|.|||+||++|+.+.|.|+++++.+. ++.++.+|.+ .+++++++|+|.++||+++|++| ...+|.|.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~ 90 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PRVRYNGT 90 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc---cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ceeEecCC
Confidence 568999999999999999999999999999984 4788999998 78999999999999999999887 67889999
Q ss_pred CCHHHHHHHH
Q 020926 197 RDLEDFVSFI 206 (319)
Q Consensus 197 ~~~~~l~~~i 206 (319)
++.+.|.+||
T Consensus 91 ~~~~~l~~f~ 100 (100)
T cd02999 91 RTLDSLAAFY 100 (100)
T ss_pred CCHHHHHhhC
Confidence 9999999985
No 36
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.80 E-value=2.1e-19 Score=133.61 Aligned_cols=101 Identities=20% Similarity=0.367 Sum_probs=87.9
Q ss_pred EcCccChHHHhh--cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEE
Q 020926 106 VLTADNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 183 (319)
Q Consensus 106 ~l~~~~f~~~~~--~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~ 183 (319)
.++.++|.+.+. +.+++++|.||+|||++|+.+.|.|.++++.+... ++.+++||++.++.++.+++|.++||+++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 356677776553 36799999999999999999999999999999642 689999999999999999999999999999
Q ss_pred eCCCcCeeecCCCCCHHHHHHHHHH
Q 020926 184 PKGNKDGEEYGGGRDLEDFVSFINE 208 (319)
Q Consensus 184 ~~g~~~~~~~~g~~~~~~l~~~i~~ 208 (319)
++| +....+.|..+.+.|.+||++
T Consensus 87 ~~g-~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 ING-QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECC-EEEEEecCCCCHHHHHHHHhc
Confidence 877 566778899999999999975
No 37
>PRK09381 trxA thioredoxin; Provisional
Probab=99.80 E-value=7.3e-19 Score=130.63 Aligned_cols=106 Identities=33% Similarity=0.666 Sum_probs=95.4
Q ss_pred CceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEE
Q 020926 102 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 181 (319)
Q Consensus 102 ~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~ 181 (319)
+.+.++++++|.+.+.+.+++++|.||++||++|+.+.|.|+++++.+. +.+.++.+|++.++.++++|+|.++||++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC--CCcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 5688899999998776778999999999999999999999999999986 46899999999999999999999999999
Q ss_pred EEeCCCcCeeecCCCCCHHHHHHHHHHhh
Q 020926 182 FFPKGNKDGEEYGGGRDLEDFVSFINEKC 210 (319)
Q Consensus 182 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 210 (319)
+|++| +....+.|..+.+.|..||..++
T Consensus 81 ~~~~G-~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNG-EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence 99876 46667889999999999998754
No 38
>PHA02278 thioredoxin-like protein
Probab=99.80 E-value=4.5e-19 Score=128.96 Aligned_cols=93 Identities=15% Similarity=0.233 Sum_probs=79.9
Q ss_pred ccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc----hhhHhhcCCccccEEEEEe
Q 020926 109 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFP 184 (319)
Q Consensus 109 ~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~----~~l~~~~~v~~~Pti~~~~ 184 (319)
..+|.+.+ ..+++++|+|||+||+||+.+.|.+++++..+. ..+.++.+|++.+ ++++++|+|.++||+++|+
T Consensus 4 ~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~--~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGD--IKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc--CCceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 45677777 678999999999999999999999999998753 3466888888865 6899999999999999999
Q ss_pred CCCcCeeecCCCCCHHHHHHH
Q 020926 185 KGNKDGEEYGGGRDLEDFVSF 205 (319)
Q Consensus 185 ~g~~~~~~~~g~~~~~~l~~~ 205 (319)
+| +...+..|..+.+.+.++
T Consensus 81 ~G-~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DG-QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CC-EEEEEEeCCCCHHHHHhh
Confidence 87 567788898888888776
No 39
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.79 E-value=3.9e-19 Score=130.20 Aligned_cols=83 Identities=25% Similarity=0.494 Sum_probs=75.3
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHH
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 83 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i 83 (319)
++|+|||+||++|+.+.|.|+++++.+++ ..+.++.|||++++.+|++|+|.++||+++|++|. . .+|.|.++.++|
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~-~~~~G~~~~~~l 95 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV-F-RRYQGPRDKEDL 95 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC-E-EEecCCCCHHHH
Confidence 57999999999999999999999998753 35999999999999999999999999999998885 3 789999999999
Q ss_pred HHHHHh
Q 020926 84 AEYVNN 89 (319)
Q Consensus 84 ~~~i~~ 89 (319)
.+|+++
T Consensus 96 ~~~i~~ 101 (101)
T cd02994 96 ISFIEE 101 (101)
T ss_pred HHHHhC
Confidence 999863
No 40
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.79 E-value=2.8e-19 Score=130.85 Aligned_cols=85 Identities=22% Similarity=0.344 Sum_probs=72.7
Q ss_pred ccChHHHhhc-CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCC
Q 020926 109 ADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 187 (319)
Q Consensus 109 ~~~f~~~~~~-~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~ 187 (319)
.++|+..+.. .+++++|.|||+||+||+.+.|.+++++.++. +.+.|++||++++++++++|+|.++||+++|++|.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~--~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS--NFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc--CceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 3567777743 57899999999999999999999999999985 34789999999999999999999999999999884
Q ss_pred cCeeecCCC
Q 020926 188 KDGEEYGGG 196 (319)
Q Consensus 188 ~~~~~~~g~ 196 (319)
......|.
T Consensus 80 -~v~~~~G~ 87 (114)
T cd02954 80 -HMKIDLGT 87 (114)
T ss_pred -EEEEEcCC
Confidence 45555554
No 41
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2e-19 Score=135.39 Aligned_cols=86 Identities=27% Similarity=0.444 Sum_probs=79.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.|+|+|||+||++|+.+.|.+++++.++. +.+.+++||.+++.+++.+|+|..+||+++|++|... .++.|..+.+.
T Consensus 63 PVlVdF~A~WCgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~-d~~vG~~~~~~ 139 (150)
T KOG0910|consen 63 PVLVDFHAEWCGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV-DRFVGAVPKEQ 139 (150)
T ss_pred CEEEEEecCcCccHhHhhHHHHHHHHhhc--CeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe-eeecccCCHHH
Confidence 58999999999999999999999999994 5799999999999999999999999999999999743 68889999999
Q ss_pred HHHHHHhcC
Q 020926 83 LAEYVNNEG 91 (319)
Q Consensus 83 i~~~i~~~~ 91 (319)
|.++|++..
T Consensus 140 l~~~i~k~l 148 (150)
T KOG0910|consen 140 LRSLIKKFL 148 (150)
T ss_pred HHHHHHHHh
Confidence 999998753
No 42
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.79 E-value=7.4e-19 Score=129.45 Aligned_cols=101 Identities=46% Similarity=0.871 Sum_probs=90.7
Q ss_pred eEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc--chhhHhhcCCccccEEE
Q 020926 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLK 181 (319)
Q Consensus 104 v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pti~ 181 (319)
+.+++..+|+..+ ..+++++|.||++||++|+.+.|.+.++++.+...+.+.++.+|++. +..++++|+|+++||++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 6778889999988 56679999999999999999999999999998755678999999998 89999999999999999
Q ss_pred EEeCCCcCeeecCCCCCHHHHHHHH
Q 020926 182 FFPKGNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 182 ~~~~g~~~~~~~~g~~~~~~l~~~i 206 (319)
+|++| +.+..+.|..+.+.+.+||
T Consensus 81 ~~~~g-~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENG-KFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCC-CeeEEeCCCCCHHHHHhhC
Confidence 99877 4577899999999999885
No 43
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.79 E-value=1e-18 Score=126.75 Aligned_cols=94 Identities=26% Similarity=0.573 Sum_probs=83.6
Q ss_pred cChHHHhhcC-CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCc
Q 020926 110 DNFDEIVLDK-SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 188 (319)
Q Consensus 110 ~~f~~~~~~~-~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~ 188 (319)
++|++.+.+. +++++|.||++||++|+.+.|.+.+++..+. +.+.++.+|++.+.+++++|+|.++||+++|++| +
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~ 77 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ--GQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAG-Q 77 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCC-E
Confidence 3677777544 7899999999999999999999999999985 3588999999999999999999999999999866 5
Q ss_pred CeeecCCCCCHHHHHHHH
Q 020926 189 DGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 189 ~~~~~~g~~~~~~l~~~i 206 (319)
....+.|..+.++|..||
T Consensus 78 ~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 78 PVDGFQGAQPEEQLRQML 95 (96)
T ss_pred EeeeecCCCCHHHHHHHh
Confidence 566799999999999987
No 44
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.79 E-value=3.2e-19 Score=131.09 Aligned_cols=85 Identities=41% Similarity=0.782 Sum_probs=79.3
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|+||++||++|+.+.|.|.++++.+.+ ++.++.|||++++.+|++|+|+++||+++|++|... .+|.|.++.++
T Consensus 19 ~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~-~~~~g~~~~~~ 95 (103)
T PF00085_consen 19 PVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV-KRYNGPRNAES 95 (103)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE-EEEESSSSHHH
T ss_pred CEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEEECCcEE-EEEECCCCHHH
Confidence 579999999999999999999999999975 699999999999999999999999999999999854 69999999999
Q ss_pred HHHHHHhc
Q 020926 83 LAEYVNNE 90 (319)
Q Consensus 83 i~~~i~~~ 90 (319)
|.+||+++
T Consensus 96 l~~~i~~~ 103 (103)
T PF00085_consen 96 LIEFIEKH 103 (103)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 99999863
No 45
>PTZ00062 glutaredoxin; Provisional
Probab=99.78 E-value=2e-18 Score=140.16 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=107.5
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
+++++|+|+||++|+.+.|.+.+++++++. +.|+.||.+ |+|.++||+++|++|.. ..++.| .++..
T Consensus 19 ~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~---~~F~~V~~d--------~~V~~vPtfv~~~~g~~-i~r~~G-~~~~~ 85 (204)
T PTZ00062 19 KLVLYVKSSKEPEYEQLMDVCNALVEDFPS---LEFYVVNLA--------DANNEYGVFEFYQNSQL-INSLEG-CNTST 85 (204)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHCCC---cEEEEEccc--------cCcccceEEEEEECCEE-EeeeeC-CCHHH
Confidence 478999999999999999999999999854 999999987 99999999999999984 467776 46899
Q ss_pred HHHHHHhcCCCCccccCCCCceEEcCccChHHHhhcCCCcEEEEE---ECCCCccccchHHHHHHHHHHhcCCCCeEEEE
Q 020926 83 LAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEF---YAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 159 (319)
Q Consensus 83 i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~F---~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~ 159 (319)
+..++....+..... ...+...+++ +.++.++..= +.|||++|++....|.+. ++.+..
T Consensus 86 ~~~~~~~~~~~~~~~---------~~~~~v~~li-~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~--------~i~y~~ 147 (204)
T PTZ00062 86 LVSFIRGWAQKGSSE---------DTVEKIERLI-RNHKILLFMKGSKTFPFCRFSNAVVNMLNSS--------GVKYET 147 (204)
T ss_pred HHHHHHHHcCCCCHH---------HHHHHHHHHH-hcCCEEEEEccCCCCCCChhHHHHHHHHHHc--------CCCEEE
Confidence 999998876542210 1223344454 3433333222 337999999988888754 345566
Q ss_pred EeCccchhh----HhhcCCccccEEEE
Q 020926 160 LDADKYKDL----AEKYGVSGFPTLKF 182 (319)
Q Consensus 160 vd~~~~~~l----~~~~~v~~~Pti~~ 182 (319)
+|++.++++ .+..|..++|.+++
T Consensus 148 ~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 148 YNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred EEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 677655443 33446678898764
No 46
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.78 E-value=6.8e-19 Score=129.29 Aligned_cols=82 Identities=20% Similarity=0.349 Sum_probs=70.5
Q ss_pred ceEEEEEc--CCCh---hhhhhhHHHHHHHHHhhcCCceEEEEEec-----ccchhhhhhcCCC--cCCeEEeccCCC-C
Q 020926 3 LNAFCVKC--DRCG---HCKKLAPEYEKLGASFKKAKSVLIGKVDC-----DEHKSLCSKYGVQ--GYPTIQWFPKGS-L 69 (319)
Q Consensus 3 ~~~v~Fya--~~C~---~C~~~~p~~~~~a~~~~~~~~v~~~~vd~-----~~~~~l~~~~~i~--~~Pt~~~~~~~~-~ 69 (319)
++||.||| |||+ ||++++|.+...+. .|.+++||| +++.+||++|+|+ +|||+++|++|. .
T Consensus 20 ~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~ 93 (116)
T cd03007 20 YSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFE 93 (116)
T ss_pred cEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcC
Confidence 58999999 9998 77777777766554 389999999 5678999999999 999999999884 3
Q ss_pred CCcccCCC-CChHHHHHHHHhc
Q 020926 70 EPKKYEGP-RSTEALAEYVNNE 90 (319)
Q Consensus 70 ~~~~y~g~-~~~~~i~~~i~~~ 90 (319)
.+..|.|. ++.++|++|+.++
T Consensus 94 ~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 94 NPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCccCCCCcccHHHHHHHHHhc
Confidence 46899996 9999999999875
No 47
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.78 E-value=6.8e-19 Score=130.87 Aligned_cols=85 Identities=16% Similarity=0.304 Sum_probs=77.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|+||||||++|+.+.|.|+++++.+.+ .++.++.|||++++.++++++|.++||+++|++|. ....+.|..+.+.
T Consensus 26 ~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~-~~~~~~G~~~~~~ 103 (111)
T cd02963 26 PYLIKITSDWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQ-VTFYHDSSFTKQH 103 (111)
T ss_pred eEEEEEECCccHhHHHhhHHHHHHHHHHHh-cCceEEEEeccccHHHHHHcCCccCCEEEEEECCE-EEEEecCCCCHHH
Confidence 589999999999999999999999999965 25999999999999999999999999999998876 4467789999999
Q ss_pred HHHHHHh
Q 020926 83 LAEYVNN 89 (319)
Q Consensus 83 i~~~i~~ 89 (319)
|.+|+++
T Consensus 104 l~~~i~~ 110 (111)
T cd02963 104 VVDFVRK 110 (111)
T ss_pred HHHHHhc
Confidence 9999874
No 48
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.78 E-value=1.1e-18 Score=129.46 Aligned_cols=84 Identities=25% Similarity=0.557 Sum_probs=75.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc-chhhhh-hcCCCcCCeEEeccCCCCCCcccCCC-CC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-HKSLCS-KYGVQGYPTIQWFPKGSLEPKKYEGP-RS 79 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~-~~~l~~-~~~i~~~Pt~~~~~~~~~~~~~y~g~-~~ 79 (319)
.++|.||+|||+||+.+.|.|.++++.+++ ..+.++.|||+. +..+|. .++|+++||+++|++|+..+..|.|. ++
T Consensus 23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~~ 101 (109)
T cd02993 23 STLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRD 101 (109)
T ss_pred CEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCCCCceeccCCCCC
Confidence 589999999999999999999999999874 359999999997 678887 49999999999999887677899995 89
Q ss_pred hHHHHHHH
Q 020926 80 TEALAEYV 87 (319)
Q Consensus 80 ~~~i~~~i 87 (319)
.++|..|+
T Consensus 102 ~~~l~~f~ 109 (109)
T cd02993 102 VDSLLMFV 109 (109)
T ss_pred HHHHHhhC
Confidence 99999885
No 49
>PRK10996 thioredoxin 2; Provisional
Probab=99.77 E-value=3.4e-18 Score=132.15 Aligned_cols=105 Identities=28% Similarity=0.644 Sum_probs=94.1
Q ss_pred CCceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEE
Q 020926 101 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 180 (319)
Q Consensus 101 ~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti 180 (319)
...+..++..+|+..+ +.+++++|.||++||++|+.+.|.|.++++.+. +++.++.+|++.+++++++|+|.++||+
T Consensus 34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS--GKVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 4457778889999987 678999999999999999999999999999875 4699999999999999999999999999
Q ss_pred EEEeCCCcCeeecCCCCCHHHHHHHHHHh
Q 020926 181 KFFPKGNKDGEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 181 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 209 (319)
++|++| +....+.|..+.+.|.+||+++
T Consensus 111 ii~~~G-~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 111 MIFKNG-QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence 999866 5677789999999999999875
No 50
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.77 E-value=1.6e-18 Score=128.75 Aligned_cols=84 Identities=40% Similarity=0.773 Sum_probs=76.4
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc--chhhhhhcCCCcCCeEEeccCCC----CCCcccCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQWFPKGS----LEPKKYEG 76 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~~~----~~~~~y~g 76 (319)
.++|.|||+||++|+.+.|.|+++++.+.+ .+.++.|||+. +..+|++|+|+++||+++|++|+ .....|.|
T Consensus 20 ~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G 97 (109)
T cd03002 20 TTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNG 97 (109)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcccccccccccC
Confidence 479999999999999999999999999854 58999999998 88999999999999999999886 34688999
Q ss_pred CCChHHHHHHHH
Q 020926 77 PRSTEALAEYVN 88 (319)
Q Consensus 77 ~~~~~~i~~~i~ 88 (319)
.++.++|.+|+.
T Consensus 98 ~~~~~~l~~fi~ 109 (109)
T cd03002 98 ERSAKAIVDFVL 109 (109)
T ss_pred ccCHHHHHHHhC
Confidence 999999999973
No 51
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.77 E-value=2.5e-18 Score=126.06 Aligned_cols=95 Identities=20% Similarity=0.364 Sum_probs=79.1
Q ss_pred CccChHHHhhcC-CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch---hhHhhcCCccccEEEEE
Q 020926 108 TADNFDEIVLDK-SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---DLAEKYGVSGFPTLKFF 183 (319)
Q Consensus 108 ~~~~f~~~~~~~-~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~---~l~~~~~v~~~Pti~~~ 183 (319)
+.++|++.+.+. +++++|.||++||++|+.+.|.+.++++.+ +++.|+.||+++++ +++++|+|+++||+++|
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~---~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC---NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC---CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 356777877533 899999999999999999999999999998 46899999998774 79999999999999999
Q ss_pred eCCCcCeeecCCCCCHHHHHHHHH
Q 020926 184 PKGNKDGEEYGGGRDLEDFVSFIN 207 (319)
Q Consensus 184 ~~g~~~~~~~~g~~~~~~l~~~i~ 207 (319)
++| +....+.| ...+.+.+-+.
T Consensus 79 ~~G-~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 79 KDG-EKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred eCC-eEEEEEeC-CCHHHHHHHHH
Confidence 776 46777888 45566666554
No 52
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.77 E-value=1.7e-18 Score=125.57 Aligned_cols=83 Identities=24% Similarity=0.497 Sum_probs=75.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|+||++||++|+.+.|.+.++++.+.+ .+.++.||+++++.++++|+|.++||+++|++|. ...++.|..+.+.
T Consensus 14 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~~ 90 (96)
T cd02956 14 PVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ-PVDGFQGAQPEEQ 90 (96)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE-EeeeecCCCCHHH
Confidence 589999999999999999999999999854 5899999999999999999999999999999775 4467899999999
Q ss_pred HHHHHH
Q 020926 83 LAEYVN 88 (319)
Q Consensus 83 i~~~i~ 88 (319)
|..|++
T Consensus 91 l~~~l~ 96 (96)
T cd02956 91 LRQMLD 96 (96)
T ss_pred HHHHhC
Confidence 999874
No 53
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.77 E-value=1.5e-18 Score=127.35 Aligned_cols=83 Identities=43% Similarity=0.875 Sum_probs=75.7
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhc-CCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKK-AKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~-~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
++|+|||+||++|+.+.|.|.++++.+.+ ...+.++.|||+++..+|++|+|.++||+++|++|. ...+|.|.++.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~~~ 97 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE-KVDKYKGTRDLDS 97 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC-eeeEeeCCCCHHH
Confidence 78999999999999999999999999975 236999999999999999999999999999998886 4578999999999
Q ss_pred HHHHH
Q 020926 83 LAEYV 87 (319)
Q Consensus 83 i~~~i 87 (319)
|.+|+
T Consensus 98 l~~~i 102 (102)
T cd03005 98 LKEFV 102 (102)
T ss_pred HHhhC
Confidence 98875
No 54
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.76 E-value=3e-18 Score=126.00 Aligned_cols=83 Identities=40% Similarity=0.741 Sum_probs=77.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|.||++||++|+.+.|.|.++++.+.+ .+.++.+||++++.++++|+|+++|++++|++|......|.|.++.++
T Consensus 20 ~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~ 97 (103)
T cd03001 20 VWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKA 97 (103)
T ss_pred cEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHH
Confidence 489999999999999999999999999854 599999999999999999999999999999988656789999999999
Q ss_pred HHHHH
Q 020926 83 LAEYV 87 (319)
Q Consensus 83 i~~~i 87 (319)
|.+|+
T Consensus 98 l~~~~ 102 (103)
T cd03001 98 IVSAA 102 (103)
T ss_pred HHHHh
Confidence 99997
No 55
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.76 E-value=4.6e-18 Score=124.51 Aligned_cols=97 Identities=23% Similarity=0.419 Sum_probs=82.6
Q ss_pred cCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCC
Q 020926 107 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 186 (319)
Q Consensus 107 l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g 186 (319)
-+.++|+.++ +.+++++|+|||+||++|+.+.|.+.+++..+.. ..+.|+.+|++ +.+++++|+|+++||+++|++|
T Consensus 5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 4678888887 6788999999999999999999999999999863 35789999999 7789999999999999999877
Q ss_pred CcCeeecCCCCCHHHHHHHHHH
Q 020926 187 NKDGEEYGGGRDLEDFVSFINE 208 (319)
Q Consensus 187 ~~~~~~~~g~~~~~~l~~~i~~ 208 (319)
+...+..| .+.+.+.++|.+
T Consensus 82 -~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 82 -ELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred -EEEEEEec-CChHHHHHHHhh
Confidence 44555566 488899988864
No 56
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.76 E-value=4.6e-18 Score=124.70 Aligned_cols=87 Identities=46% Similarity=0.848 Sum_probs=80.7
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|+||++||++|+.+.|.|+++++.+++.+.+.++.+||++++.+|++|+|.++|++++|++|+. ...|.|..+.+.
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~g~~~~~~ 93 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKK-PVDYEGGRDLEA 93 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCc-ceeecCCCCHHH
Confidence 5799999999999999999999999999765479999999999999999999999999999999975 689999999999
Q ss_pred HHHHHHhc
Q 020926 83 LAEYVNNE 90 (319)
Q Consensus 83 i~~~i~~~ 90 (319)
|..|++++
T Consensus 94 l~~~i~~~ 101 (102)
T TIGR01126 94 IVEFVNEK 101 (102)
T ss_pred HHHHHHhc
Confidence 99999864
No 57
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.76 E-value=4.7e-18 Score=125.09 Aligned_cols=86 Identities=35% Similarity=0.709 Sum_probs=77.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 81 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~ 81 (319)
+++|.|||+||++|+.+.|.|+++++.+++. ..+.++.+||++.+.++++|+|.++||+++|+++. ...|.|..+.+
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~--~~~~~G~~~~~ 94 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL--AYNYRGPRTKD 94 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC--ceeecCCCCHH
Confidence 5799999999999999999999999998653 35999999999999999999999999999997663 36789999999
Q ss_pred HHHHHHHhc
Q 020926 82 ALAEYVNNE 90 (319)
Q Consensus 82 ~i~~~i~~~ 90 (319)
.|.+|+++.
T Consensus 95 ~l~~~~~~~ 103 (104)
T cd03000 95 DIVEFANRV 103 (104)
T ss_pred HHHHHHHhh
Confidence 999999863
No 58
>PHA02278 thioredoxin-like protein
Probab=99.76 E-value=2e-18 Score=125.62 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=70.5
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc----hhhhhhcCCCcCCeEEeccCCCCCCcccCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR 78 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~ 78 (319)
+++|+|||||||+|+.+.|.++++++.+. ..+.++.||++.+ .+++++|+|.++||+++|++|. ...+..|..
T Consensus 16 ~vvV~F~A~WCgpCk~m~p~l~~l~~~~~--~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~-~v~~~~G~~ 92 (103)
T PHA02278 16 DVIVMITQDNCGKCEILKSVIPMFQESGD--IKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ-LVKKYEDQV 92 (103)
T ss_pred cEEEEEECCCCHHHHhHHHHHHHHHhhhc--CCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE-EEEEEeCCC
Confidence 58999999999999999999999998753 3477899999976 6899999999999999999987 447788988
Q ss_pred ChHHHHHH
Q 020926 79 STEALAEY 86 (319)
Q Consensus 79 ~~~~i~~~ 86 (319)
+.+.|.++
T Consensus 93 ~~~~l~~~ 100 (103)
T PHA02278 93 TPMQLQEL 100 (103)
T ss_pred CHHHHHhh
Confidence 88888765
No 59
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.76 E-value=6.3e-18 Score=124.40 Aligned_cols=96 Identities=41% Similarity=0.812 Sum_probs=83.9
Q ss_pred cChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCC-CCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCc
Q 020926 110 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 188 (319)
Q Consensus 110 ~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~-~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~ 188 (319)
++|++.. .++.++|.||++||++|+.+.|.|+++++.++.. .++.++.+|++..++++++|+|.++||+++|.+|
T Consensus 7 ~~~~~~~--~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-- 82 (104)
T cd03000 7 DSFKDVR--KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-- 82 (104)
T ss_pred hhhhhhc--cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC--
Confidence 6777743 5679999999999999999999999999998643 3589999999999999999999999999999655
Q ss_pred CeeecCCCCCHHHHHHHHHHh
Q 020926 189 DGEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 189 ~~~~~~g~~~~~~l~~~i~~~ 209 (319)
....+.|..+.++|.+|+++.
T Consensus 83 ~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 83 LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred CceeecCCCCHHHHHHHHHhh
Confidence 456799999999999999864
No 60
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.76 E-value=1.1e-18 Score=127.67 Aligned_cols=73 Identities=19% Similarity=0.203 Sum_probs=64.7
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPR 78 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~ 78 (319)
+++|+|||+|||+|+.+.|.+++++.++.+ .+.|++||++++++++.+|+|.++||+++|++|... .+..|..
T Consensus 16 ~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v-~~~~G~~ 88 (114)
T cd02954 16 VVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM-KIDLGTG 88 (114)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE-EEEcCCC
Confidence 589999999999999999999999999854 489999999999999999999999999999998744 4444543
No 61
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.76 E-value=4.7e-18 Score=124.08 Aligned_cols=100 Identities=58% Similarity=1.052 Sum_probs=90.0
Q ss_pred EcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeC
Q 020926 106 VLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK 185 (319)
Q Consensus 106 ~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~ 185 (319)
+++..+|.+.+ .++++++|.||++||++|+.+.|.|.++++.++....+.++.+|++.+..++++|+|+++||+++|++
T Consensus 2 ~l~~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELV-KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHH-hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 46788999988 55559999999999999999999999999998645689999999999999999999999999999988
Q ss_pred CCcCeeecCCCCCHHHHHHHH
Q 020926 186 GNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 186 g~~~~~~~~g~~~~~~l~~~i 206 (319)
++.....|.|..+.+.+.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 867888899999999998874
No 62
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.75 E-value=3.4e-18 Score=127.23 Aligned_cols=87 Identities=18% Similarity=0.267 Sum_probs=76.1
Q ss_pred cceEEEEEcCCChh--hh--hhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCC
Q 020926 2 FLNAFCVKCDRCGH--CK--KLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP 77 (319)
Q Consensus 2 ~~~~v~Fya~~C~~--C~--~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~ 77 (319)
.++++.||++||++ |+ .++|.+.++|.++-..+++.|++||+++++++|++|+|+++||+++|++|.. ..|.|.
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~--v~~~G~ 105 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEV--IEYDGE 105 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEE--EEeeCC
Confidence 36788999999976 99 8889999998887323469999999999999999999999999999999973 349999
Q ss_pred CChHHHHHHHHhc
Q 020926 78 RSTEALAEYVNNE 90 (319)
Q Consensus 78 ~~~~~i~~~i~~~ 90 (319)
++.+.|.+|+.+.
T Consensus 106 ~~~~~l~~~l~~~ 118 (120)
T cd03065 106 FAADTLVEFLLDL 118 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999864
No 63
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.74 E-value=8.7e-18 Score=123.89 Aligned_cols=85 Identities=54% Similarity=0.931 Sum_probs=78.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc-chhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 81 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~ 81 (319)
.++|+||++||++|+.+.|.|.++++.++..+.+.++.+||++ ++.+|++|+|.++|++++|.+|+.....|.|.++.+
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~ 99 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLE 99 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCCCccccCCccCHH
Confidence 4799999999999999999999999998744579999999999 999999999999999999998866678899999999
Q ss_pred HHHHHH
Q 020926 82 ALAEYV 87 (319)
Q Consensus 82 ~i~~~i 87 (319)
.|.+|+
T Consensus 100 ~l~~~i 105 (105)
T cd02998 100 DLVKFV 105 (105)
T ss_pred HHHhhC
Confidence 999885
No 64
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=9.9e-18 Score=121.90 Aligned_cols=86 Identities=35% Similarity=0.740 Sum_probs=73.0
Q ss_pred cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCC
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 197 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~ 197 (319)
.+++.++|+|||+|||||+.+.|.+.++|.+|. ++.|+++|+++..++++.++|...||++||++|. ....+.|.-
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~vGa~ 94 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEVVGAN 94 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEEecCC
Confidence 456999999999999999999999999999994 5999999999999999999999999999998874 556666643
Q ss_pred CHHHHHHHHHH
Q 020926 198 DLEDFVSFINE 208 (319)
Q Consensus 198 ~~~~l~~~i~~ 208 (319)
.+.+.+.|.+
T Consensus 95 -~~~l~~~i~~ 104 (106)
T KOG0907|consen 95 -KAELEKKIAK 104 (106)
T ss_pred -HHHHHHHHHh
Confidence 3366665543
No 65
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.74 E-value=1.9e-17 Score=123.53 Aligned_cols=100 Identities=40% Similarity=0.780 Sum_probs=82.4
Q ss_pred ceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCC-CCeEEEEEeCc--cchhhHhhcCCccccE
Q 020926 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDAD--KYKDLAEKYGVSGFPT 179 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~-~~~~~~~vd~~--~~~~l~~~~~v~~~Pt 179 (319)
.+.+++..+|.+.+.+.+++++|.||++||++|+.+.|.|++++..++.. +.+.++.+||+ .+.+++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 47889999999999777789999999999999999999999999998643 35889999986 4678999999999999
Q ss_pred EEEEeCCCcC---eeecCCC-CCHHHH
Q 020926 180 LKFFPKGNKD---GEEYGGG-RDLEDF 202 (319)
Q Consensus 180 i~~~~~g~~~---~~~~~g~-~~~~~l 202 (319)
+++|++|.+. ...|.|. +..+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 9999888542 2345554 444444
No 66
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.74 E-value=1.9e-17 Score=120.33 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=86.1
Q ss_pred eEEcCccChHHHhhcCCCcEEEEEECCC--CccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEE
Q 020926 104 VVVLTADNFDEIVLDKSKDVLVEFYAPW--CGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 181 (319)
Q Consensus 104 v~~l~~~~f~~~~~~~~~~v~v~F~~~w--C~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~ 181 (319)
...++..||++.+ ..+..++|.||++| |++|+.+.|.|+++++++. +.+.|+++|+++++.++.+|+|.++||++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~--~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP--GRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC--CcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 4568999999888 88899999999997 9999999999999999985 45889999999999999999999999999
Q ss_pred EEeCCCcCeeecCCCCCHHHHH
Q 020926 182 FFPKGNKDGEEYGGGRDLEDFV 203 (319)
Q Consensus 182 ~~~~g~~~~~~~~g~~~~~~l~ 203 (319)
+|++| +....+.|..+.+++.
T Consensus 89 ~fkdG-k~v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDG-RYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEECC-EEEEEEeCccCHHHHh
Confidence 99988 5666788988887765
No 67
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.74 E-value=1.4e-17 Score=126.74 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=85.5
Q ss_pred CccChHHHhh-cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEE-EEeC
Q 020926 108 TADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK-FFPK 185 (319)
Q Consensus 108 ~~~~f~~~~~-~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~-~~~~ 185 (319)
+..+|++.+. ..+++++|.|||+||+||+.+.|.++++|+++. +.+.|++||+|++++++..|+|++.|+++ ||++
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~--~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIK--NFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC--CceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 4577888775 457899999999999999999999999999984 34788999999999999999999776666 8888
Q ss_pred CCcCeeecCC--------CCCHHHHHHHHHHhhCCC
Q 020926 186 GNKDGEEYGG--------GRDLEDFVSFINEKCGTS 213 (319)
Q Consensus 186 g~~~~~~~~g--------~~~~~~l~~~i~~~~~~~ 213 (319)
|.....+..| ..+.++|.+-+.......
T Consensus 88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred CeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 7546666777 467788888887766433
No 68
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.74 E-value=1.9e-17 Score=149.80 Aligned_cols=109 Identities=30% Similarity=0.604 Sum_probs=94.2
Q ss_pred CCCceEEcCccChHHHhh--cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch-hhH-hhcCCc
Q 020926 100 VPSNVVVLTADNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-DLA-EKYGVS 175 (319)
Q Consensus 100 ~~~~v~~l~~~~f~~~~~--~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~-~l~-~~~~v~ 175 (319)
....|.+|+.++|+..+. +.+++++|.||+|||++|+.+.|.|+++|+.++.. .+.|+.||++.+. .++ ++|+|.
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~ 427 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLG 427 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCC
Confidence 345799999999999983 47889999999999999999999999999999643 4889999998653 454 689999
Q ss_pred cccEEEEEeCCCcCeeecC-CCCCHHHHHHHHHHh
Q 020926 176 GFPTLKFFPKGNKDGEEYG-GGRDLEDFVSFINEK 209 (319)
Q Consensus 176 ~~Pti~~~~~g~~~~~~~~-g~~~~~~l~~~i~~~ 209 (319)
++||+++|++|...+..|. |.++.+.|..||+..
T Consensus 428 ~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 428 SFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred ccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9999999999976778897 589999999999853
No 69
>PLN02309 5'-adenylylsulfate reductase
Probab=99.74 E-value=2e-17 Score=149.66 Aligned_cols=108 Identities=31% Similarity=0.653 Sum_probs=96.1
Q ss_pred CCceEEcCccChHHHhh--cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc-cchhhHh-hcCCcc
Q 020926 101 PSNVVVLTADNFDEIVL--DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAE-KYGVSG 176 (319)
Q Consensus 101 ~~~v~~l~~~~f~~~~~--~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~-~~~~l~~-~~~v~~ 176 (319)
...|.+++.++|++++. +.+++++|.||+|||++|+.+.|.|++++..+... ++.|+++|++ .+.+++. +|+|.+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCce
Confidence 34789999999999873 57899999999999999999999999999998643 6999999999 7788886 599999
Q ss_pred ccEEEEEeCCCcCeeecCC-CCCHHHHHHHHHHh
Q 020926 177 FPTLKFFPKGNKDGEEYGG-GRDLEDFVSFINEK 209 (319)
Q Consensus 177 ~Pti~~~~~g~~~~~~~~g-~~~~~~l~~~i~~~ 209 (319)
+||+++|++|...+..|.| .++.+.|.+||+..
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999999877888975 79999999999864
No 70
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.73 E-value=1.3e-17 Score=122.68 Aligned_cols=84 Identities=39% Similarity=0.723 Sum_probs=75.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCC-CCCcccCCCCChH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS-LEPKKYEGPRSTE 81 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~-~~~~~y~g~~~~~ 81 (319)
.++|.||+|||++|+.+.|.|.++++.+++...+.++.+||+++ +++..+++.++||+++|.+|+ ....+|.|..+.+
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~ 98 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLE 98 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCcCCceEccCCcCHH
Confidence 47899999999999999999999999987645799999999987 688999999999999999887 3457899999999
Q ss_pred HHHHHH
Q 020926 82 ALAEYV 87 (319)
Q Consensus 82 ~i~~~i 87 (319)
+|.+||
T Consensus 99 ~l~~fi 104 (104)
T cd02995 99 DLIKFI 104 (104)
T ss_pred HHHhhC
Confidence 999885
No 71
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-17 Score=139.16 Aligned_cols=89 Identities=27% Similarity=0.524 Sum_probs=82.7
Q ss_pred cceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChH
Q 020926 2 FLNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 81 (319)
Q Consensus 2 ~~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~ 81 (319)
..|+|+||+|||++|+.+.|.+++++.++++ .+.+++|||++++.++.+|||+++||++.|..|... ..|.|....+
T Consensus 44 ~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpV-dgF~G~qPes 120 (304)
T COG3118 44 VPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPV-DGFQGAQPES 120 (304)
T ss_pred CCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCc-cccCCCCcHH
Confidence 3689999999999999999999999999954 799999999999999999999999999999999854 8899999999
Q ss_pred HHHHHHHhcCCC
Q 020926 82 ALAEYVNNEGGT 93 (319)
Q Consensus 82 ~i~~~i~~~~~~ 93 (319)
.|.+|+....+.
T Consensus 121 qlr~~ld~~~~~ 132 (304)
T COG3118 121 QLRQFLDKVLPA 132 (304)
T ss_pred HHHHHHHHhcCh
Confidence 999999987654
No 72
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.73 E-value=2.8e-17 Score=122.70 Aligned_cols=89 Identities=26% Similarity=0.404 Sum_probs=77.7
Q ss_pred CceEEcCccChHHHhhcC--CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccE
Q 020926 102 SNVVVLTADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 179 (319)
Q Consensus 102 ~~v~~l~~~~f~~~~~~~--~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt 179 (319)
..+.+++.++|.+.+.+. +++++|.||+|||++|+.+.|.+++++..+. ++.|++||++.+ +++++|+|.++||
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 357788899999988555 3899999999999999999999999999983 688999999988 9999999999999
Q ss_pred EEEEeCCCcCeeecCC
Q 020926 180 LKFFPKGNKDGEEYGG 195 (319)
Q Consensus 180 i~~~~~g~~~~~~~~g 195 (319)
+++|++|. ....+.|
T Consensus 80 ~~~f~~G~-~v~~~~G 94 (113)
T cd02957 80 LLVYKNGE-LIDNIVG 94 (113)
T ss_pred EEEEECCE-EEEEEec
Confidence 99999884 5555665
No 73
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.73 E-value=3.8e-17 Score=126.98 Aligned_cols=94 Identities=27% Similarity=0.557 Sum_probs=81.3
Q ss_pred CCCceEEcCccChHHHhh-cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCcc--
Q 020926 100 VPSNVVVLTADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG-- 176 (319)
Q Consensus 100 ~~~~v~~l~~~~f~~~~~-~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~-- 176 (319)
.+..+.+++.++|++.+. +.+++++|.||++||++|+.+.|.++++++.+.. .++.|++||++++++++++|+|++
T Consensus 26 ~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~ 104 (152)
T cd02962 26 GPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSP 104 (152)
T ss_pred CCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecC
Confidence 357889999999999874 3457899999999999999999999999999853 369999999999999999999988
Q ss_pred ----ccEEEEEeCCCcCeeecCC
Q 020926 177 ----FPTLKFFPKGNKDGEEYGG 195 (319)
Q Consensus 177 ----~Pti~~~~~g~~~~~~~~g 195 (319)
+||+++|++| +...++.|
T Consensus 105 ~v~~~PT~ilf~~G-k~v~r~~G 126 (152)
T cd02962 105 LSKQLPTIILFQGG-KEVARRPY 126 (152)
T ss_pred CcCCCCEEEEEECC-EEEEEEec
Confidence 9999999977 45555555
No 74
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=2.8e-16 Score=140.86 Aligned_cols=286 Identities=18% Similarity=0.336 Sum_probs=158.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCC-ceEEEEEecc--cchhhhhhcCCCcCCeEEeccCCCCC---CcccCCCC
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAK-SVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPKGSLE---PKKYEGPR 78 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~-~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~~~~~---~~~y~g~~ 78 (319)
+|+||++|||||++++|+|+++|+.+..+. -|.++.|||. +|..+|++|+|++||++.+|..+... ...+.|..
T Consensus 61 lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~ 140 (606)
T KOG1731|consen 61 LVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPV 140 (606)
T ss_pred HHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCc
Confidence 689999999999999999999999998875 5789999996 67899999999999999999887433 34555666
Q ss_pred ChHHHHHHHHhcCCCCcc---ccCCCCceEEcCccChHHH---hhcCCCcEEEEE-ECCCCccccchHHHHHHHHHHhcC
Q 020926 79 STEALAEYVNNEGGTNVK---IAAVPSNVVVLTADNFDEI---VLDKSKDVLVEF-YAPWCGHCKNLAPTYEKVAAAFTL 151 (319)
Q Consensus 79 ~~~~i~~~i~~~~~~~~~---~~~~~~~v~~l~~~~f~~~---~~~~~~~v~v~F-~~~wC~~C~~~~~~~~~la~~~~~ 151 (319)
...++...+.+.....-. -+..|..--.....+...+ +.+....+.+.| ..+. .=.++.+-..+..
T Consensus 141 ~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e~~~s-------~lg~~~~l~~l~~ 213 (606)
T KOG1731|consen 141 IPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFETEPS-------DLGWANLLNDLPS 213 (606)
T ss_pred chhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEecCCc-------ccHHHHHHhhccC
Confidence 667776665542110000 0011111000111122222 212233555555 3331 1123333333322
Q ss_pred CCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhhCCCCCCCCCcccccc---chh
Q 020926 152 EDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAG---IVA 228 (319)
Q Consensus 152 ~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~---~~~ 228 (319)
+++.+..+-.+++-.+.. ++++..|+.++|++|..... +....+.+...+-|.+.+|......+....... .-+
T Consensus 214 -~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l-~~~~~s~~~y~~~I~~~lg~~~~a~~pt~~p~~~~~~~~ 290 (606)
T KOG1731|consen 214 -KQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPL-WPSSSSRSAYVKKIDDLLGDKNEASGPTLHPITATTAAP 290 (606)
T ss_pred -CCcceEEEecchhccccc-cCCCCchhhhhhcCCccccc-ccccccHHHHHHHHHHHhcCccccCCCCcCcccccccch
Confidence 344444444444444555 88999999999999964333 344455667777777777766554432222211 122
Q ss_pred hHHHHH-------HHHHhccchhHH-HHHHHHHHhhhhhcchhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHhc--
Q 020926 229 SLDALV-------KEFVAASGDEKK-AVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDK-- 298 (319)
Q Consensus 229 ~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~-- 298 (319)
.++... .-|..+...... -+..++... ..+.++.....+.+++++.+. ..+-.....=..+|++-+.+
T Consensus 291 ~Id~~~~~l~~~~~V~~aDLeqAm~~~L~~Ev~R~-~~i~g~~l~aLk~f~~ll~r~-~P~~~~~~~l~~~Ld~~~~~~~ 368 (606)
T KOG1731|consen 291 TIDAPSEVLNNQYFVYEADLEQAMSYILHIEVPRT-ALIRGENLAALKEFMHLLRRY-FPGTADGRRLVNSLDNSLSARQ 368 (606)
T ss_pred hhhcchhhcCccceehHhhHHHHHHHHHHHhhcch-hhccCchHHHHHHHHHHHHHh-CCCChhHHHHHHHHhhhhhhce
Confidence 222211 001111111111 111222211 345566666677888888877 44544454445555554433
Q ss_pred cCCh
Q 020926 299 SISA 302 (319)
Q Consensus 299 ~~~~ 302 (319)
.+++
T Consensus 369 ~it~ 372 (606)
T KOG1731|consen 369 VITG 372 (606)
T ss_pred eecH
Confidence 3554
No 75
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.72 E-value=4.9e-17 Score=118.92 Aligned_cols=100 Identities=39% Similarity=0.739 Sum_probs=88.1
Q ss_pred cCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCC
Q 020926 107 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 186 (319)
Q Consensus 107 l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g 186 (319)
++.++|.+.+.+.+++++|.||++||++|+.+.|.+.++++.+. +++.++.+|++.++.++++|+|.++|++++|++|
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYE--GKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 35677888886667799999999999999999999999998884 4699999999999999999999999999999876
Q ss_pred CcCeeecCCCCCHHHHHHHHHHh
Q 020926 187 NKDGEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 187 ~~~~~~~~g~~~~~~l~~~i~~~ 209 (319)
+....+.|..+.+.+.+||+++
T Consensus 79 -~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 -KEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred -cEeeeecCCCCHHHHHHHHHhh
Confidence 4556788999999999999865
No 76
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.72 E-value=1.5e-17 Score=137.36 Aligned_cols=87 Identities=30% Similarity=0.524 Sum_probs=77.7
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|+||||||++|+.+.|.|+++++.+++ .+.++.|||++++++|++|+|+++||+++|++|. ....+.|.++.++
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~-~v~~~~G~~s~e~ 130 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKGYPTLLLFDKGK-MYQYEGGDRSTEK 130 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCcCCEEEEEECCE-EEEeeCCCCCHHH
Confidence 479999999999999999999999999864 5999999999999999999999999999999886 3344568899999
Q ss_pred HHHHHHhcCC
Q 020926 83 LAEYVNNEGG 92 (319)
Q Consensus 83 i~~~i~~~~~ 92 (319)
|.+|+.....
T Consensus 131 L~~fi~~~~~ 140 (224)
T PTZ00443 131 LAAFALGDFK 140 (224)
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 77
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.72 E-value=4.7e-17 Score=118.09 Aligned_cols=82 Identities=18% Similarity=0.277 Sum_probs=70.8
Q ss_pred cChHHHhhc-CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCc
Q 020926 110 DNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 188 (319)
Q Consensus 110 ~~f~~~~~~-~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~ 188 (319)
+.|++.+.+ .+++++|.|+++||+||+.+.|.++++|.++. +.+.|++||+++.++++++|+|...||++||.+|..
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~--~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS--KMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc--CceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 456666644 48999999999999999999999999999994 229999999999999999999999999999998865
Q ss_pred Ceeec
Q 020926 189 DGEEY 193 (319)
Q Consensus 189 ~~~~~ 193 (319)
....+
T Consensus 81 ~~~d~ 85 (114)
T cd02986 81 MKVDY 85 (114)
T ss_pred EEEec
Confidence 44444
No 78
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.72 E-value=6e-17 Score=125.52 Aligned_cols=102 Identities=23% Similarity=0.441 Sum_probs=84.8
Q ss_pred ccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc--cchhhHhhcCCccccEEEEEeCC
Q 020926 109 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKG 186 (319)
Q Consensus 109 ~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~g 186 (319)
..+|+..+ ..+++++|.||++||++|+.+.|.+.++++.+.. .+.|+.||++ ....++++|+|.++||+++|.++
T Consensus 10 ~~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 35566665 7789999999999999999999999999999853 3556666655 44588999999999999999766
Q ss_pred CcCeeecCCCCCHHHHHHHHHHhhCCC
Q 020926 187 NKDGEEYGGGRDLEDFVSFINEKCGTS 213 (319)
Q Consensus 187 ~~~~~~~~g~~~~~~l~~~i~~~~~~~ 213 (319)
++....+.|..+.+.|.++|.+.+...
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 667778899999999999999988543
No 79
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.72 E-value=2e-17 Score=121.75 Aligned_cols=84 Identities=35% Similarity=0.737 Sum_probs=76.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc--chhhhhhcCCCcCCeEEeccCCCCCCcccCCCCCh
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 80 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~ 80 (319)
.++|.||++||++|+.+.|.+.++++.+...+.+.++.+||++ +..++++++|+++||+++|++|. ...+|.|..+.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~ 97 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK-FVEKYEGERTA 97 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC-eeEEeCCCCCH
Confidence 4799999999999999999999999998754568999999998 89999999999999999999886 45789999999
Q ss_pred HHHHHHH
Q 020926 81 EALAEYV 87 (319)
Q Consensus 81 ~~i~~~i 87 (319)
+.+.+|+
T Consensus 98 ~~l~~~l 104 (104)
T cd02997 98 EDIIEFM 104 (104)
T ss_pred HHHHhhC
Confidence 9998885
No 80
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.72 E-value=6.7e-17 Score=120.24 Aligned_cols=88 Identities=26% Similarity=0.370 Sum_probs=76.2
Q ss_pred ceEEcCc-cChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEE
Q 020926 103 NVVVLTA-DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 181 (319)
Q Consensus 103 ~v~~l~~-~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~ 181 (319)
.+..++. ++|.+.+ ..+++++|.||++||++|+.+.|.++++++.+ +++.|++||++.+++++++|+|.++||++
T Consensus 5 ~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~---~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 5 KYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKH---LETKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHc---CCCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 4566766 8888888 66789999999999999999999999999987 36899999999999999999999999999
Q ss_pred EEeCCCcCeeecCC
Q 020926 182 FFPKGNKDGEEYGG 195 (319)
Q Consensus 182 ~~~~g~~~~~~~~g 195 (319)
+|++|. ...++.|
T Consensus 81 ~fk~G~-~v~~~~g 93 (113)
T cd02989 81 LFKNGK-TVDRIVG 93 (113)
T ss_pred EEECCE-EEEEEEC
Confidence 999884 4444443
No 81
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1e-17 Score=121.81 Aligned_cols=82 Identities=27% Similarity=0.526 Sum_probs=70.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
+++|+|||+|||+|+.+.|.+.+++.+|++ +.|++||+++..+++++++|+..||+.+|++|... .++.|.. .+.
T Consensus 23 liVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~-~~~vGa~-~~~ 97 (106)
T KOG0907|consen 23 LVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEV-DEVVGAN-KAE 97 (106)
T ss_pred eEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEE-EEEecCC-HHH
Confidence 689999999999999999999999999954 99999999999999999999999999999998743 5555543 336
Q ss_pred HHHHHHh
Q 020926 83 LAEYVNN 89 (319)
Q Consensus 83 i~~~i~~ 89 (319)
+.+.+..
T Consensus 98 l~~~i~~ 104 (106)
T KOG0907|consen 98 LEKKIAK 104 (106)
T ss_pred HHHHHHh
Confidence 6665543
No 82
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.72 E-value=3.8e-17 Score=120.29 Aligned_cols=94 Identities=29% Similarity=0.483 Sum_probs=81.6
Q ss_pred cChHHHhhcCCCcEEEEEECCCCccccchHHHH---HHHHHHhcCCCCeEEEEEeCcc----chhhHhhcCCccccEEEE
Q 020926 110 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 110 ~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~---~~la~~~~~~~~~~~~~vd~~~----~~~l~~~~~v~~~Pti~~ 182 (319)
+.|.+.+ ..+++++|.||++||++|+.+.|.+ .+++..+.. ++.++.+|++. ...++++|+|+++||+++
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 4566666 7789999999999999999999988 678888753 79999999886 578999999999999999
Q ss_pred EeC-CCcCeeecCCCCCHHHHHHHH
Q 020926 183 FPK-GNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 183 ~~~-g~~~~~~~~g~~~~~~l~~~i 206 (319)
|++ +++.+.++.|..+.++|.++|
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHh
Confidence 986 556888899999999999886
No 83
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.72 E-value=2.6e-17 Score=120.69 Aligned_cols=81 Identities=22% Similarity=0.331 Sum_probs=69.3
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch---hhhhhcCCCcCCeEEeccCCCCCCcccCCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK---SLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 79 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~ 79 (319)
+++|+|||+||++|+.+.|.++++++.+ +.+.|+.||++++. +++++|+|+++||+++|++|. ...++.| ..
T Consensus 17 ~vvv~F~a~wC~~C~~~~p~l~~la~~~---~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~-~v~~~~G-~~ 91 (103)
T cd02985 17 LVVLEFALKHSGPSVKIYPTMVKLSRTC---NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGE-KIHEEEG-IG 91 (103)
T ss_pred EEEEEEECCCCHhHHHHhHHHHHHHHHC---CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCe-EEEEEeC-CC
Confidence 5899999999999999999999999998 34899999999874 899999999999999998886 4477778 55
Q ss_pred hHHHHHHHH
Q 020926 80 TEALAEYVN 88 (319)
Q Consensus 80 ~~~i~~~i~ 88 (319)
...|.+-+.
T Consensus 92 ~~~l~~~~~ 100 (103)
T cd02985 92 PDELIGDVL 100 (103)
T ss_pred HHHHHHHHH
Confidence 566666554
No 84
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.71 E-value=2.2e-17 Score=153.74 Aligned_cols=110 Identities=49% Similarity=0.940 Sum_probs=98.5
Q ss_pred ceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCC-CCeEEEEEeCccchhhHhhcCCccccEEE
Q 020926 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLK 181 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~-~~~~~~~vd~~~~~~l~~~~~v~~~Pti~ 181 (319)
.|..++.++|++.+ ..+++++|.|||+||++|+.+.|.|.++++.+... +++.++.|||+.+.++|++|+|.++||++
T Consensus 2 ~v~~l~~~~~~~~i-~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 2 DVLVLTKDNFDDFI-KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK 80 (462)
T ss_pred CceECCHHHHHHHH-hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence 57789999999998 67789999999999999999999999999988643 46999999999999999999999999999
Q ss_pred EEeCCCcCeeecCCCCCHHHHHHHHHHhhCCC
Q 020926 182 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 213 (319)
Q Consensus 182 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 213 (319)
+|.+|......|.|.++.+.|.+|+.+.++..
T Consensus 81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 112 (462)
T TIGR01130 81 IFRNGEDSVSDYNGPRDADGIVKYMKKQSGPA 112 (462)
T ss_pred EEeCCccceeEecCCCCHHHHHHHHHHhcCCC
Confidence 99988543688999999999999999987543
No 85
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.70 E-value=4.6e-17 Score=119.22 Aligned_cols=83 Identities=18% Similarity=0.360 Sum_probs=71.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|+|||+||++|+.+.|.+.++++.+.+ ..+.|+.+|++ +.+++++|+|+++||+++|++|.. ..+..| .+.+.
T Consensus 19 ~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~G-~~~~~ 94 (102)
T cd02948 19 LTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL-VAVIRG-ANAPL 94 (102)
T ss_pred eEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE-EEEEec-CChHH
Confidence 479999999999999999999999998863 34889999999 778999999999999999998863 355556 47888
Q ss_pred HHHHHHh
Q 020926 83 LAEYVNN 89 (319)
Q Consensus 83 i~~~i~~ 89 (319)
+.+++.+
T Consensus 95 ~~~~i~~ 101 (102)
T cd02948 95 LNKTITE 101 (102)
T ss_pred HHHHHhh
Confidence 8888864
No 86
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.70 E-value=6.8e-17 Score=117.91 Aligned_cols=85 Identities=53% Similarity=0.984 Sum_probs=77.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|.||++||++|+.+.|.|.++++.++..+.+.++.|||+++..++++|+|.++||+++|++++....+|.|..+.+.
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~ 96 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLES 96 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHH
Confidence 47999999999999999999999999985334699999999999999999999999999999988556689999999999
Q ss_pred HHHHH
Q 020926 83 LAEYV 87 (319)
Q Consensus 83 i~~~i 87 (319)
|.+|+
T Consensus 97 i~~~~ 101 (101)
T cd02961 97 LVEFI 101 (101)
T ss_pred HHhhC
Confidence 98874
No 87
>PRK09381 trxA thioredoxin; Provisional
Probab=99.70 E-value=6.9e-17 Score=119.95 Aligned_cols=86 Identities=23% Similarity=0.487 Sum_probs=77.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|+||+|||++|+.+.|.|+++++.+.+ .+.++.+|++.+..++++|+|.++||+++|++|. ...++.|..+.+.
T Consensus 23 ~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~~~ 99 (109)
T PRK09381 23 AILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE-VAATKVGALSKGQ 99 (109)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCe-EEEEecCCCCHHH
Confidence 589999999999999999999999999854 5999999999999999999999999999998776 4467789999999
Q ss_pred HHHHHHhcC
Q 020926 83 LAEYVNNEG 91 (319)
Q Consensus 83 i~~~i~~~~ 91 (319)
|..|++...
T Consensus 100 l~~~i~~~~ 108 (109)
T PRK09381 100 LKEFLDANL 108 (109)
T ss_pred HHHHHHHhc
Confidence 999998653
No 88
>PTZ00102 disulphide isomerase; Provisional
Probab=99.69 E-value=1.3e-16 Score=149.13 Aligned_cols=111 Identities=45% Similarity=0.910 Sum_probs=99.7
Q ss_pred CCCceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCC-CCeEEEEEeCccchhhHhhcCCcccc
Q 020926 100 VPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFP 178 (319)
Q Consensus 100 ~~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~-~~~~~~~vd~~~~~~l~~~~~v~~~P 178 (319)
.+..+..++..+|+..+ ..++.++|.||++||++|+.+.|.|.+++..++.. .++.++.|||+.+.++|++|+|.++|
T Consensus 30 ~~~~v~~l~~~~f~~~i-~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~P 108 (477)
T PTZ00102 30 ISEHVTVLTDSTFDKFI-TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYP 108 (477)
T ss_pred cCCCcEEcchhhHHHHH-hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCccc
Confidence 34678999999999988 66789999999999999999999999999888543 47999999999999999999999999
Q ss_pred EEEEEeCCCcCeeecCCCCCHHHHHHHHHHhhCCC
Q 020926 179 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 213 (319)
Q Consensus 179 ti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 213 (319)
|+++|++|+. ..|.|.++.+.|.+|+.+.++..
T Consensus 109 t~~~~~~g~~--~~y~g~~~~~~l~~~l~~~~~~~ 141 (477)
T PTZ00102 109 TIKFFNKGNP--VNYSGGRTADGIVSWIKKLTGPA 141 (477)
T ss_pred EEEEEECCce--EEecCCCCHHHHHHHHHHhhCCC
Confidence 9999998853 38999999999999999988654
No 89
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.69 E-value=2.6e-17 Score=136.05 Aligned_cols=92 Identities=33% Similarity=0.792 Sum_probs=83.4
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCC-CeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCC
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 197 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~ 197 (319)
....++|.||||||++|+++.|+|.+++..++..+ .+.++++|++..+.++.+|+|++||||.+|+++ ..+.|.|++
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd--~a~dYRG~R 119 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD--HAIDYRGGR 119 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC--eeeecCCCc
Confidence 46789999999999999999999999999886543 689999999999999999999999999999877 788999999
Q ss_pred CHHHHHHHHHHhhCC
Q 020926 198 DLEDFVSFINEKCGT 212 (319)
Q Consensus 198 ~~~~l~~~i~~~~~~ 212 (319)
+.++|++|-.+..+.
T Consensus 120 ~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 120 EKDAIIEFAHRCAAA 134 (468)
T ss_pred cHHHHHHHHHhcccc
Confidence 999999998776543
No 90
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.69 E-value=8.6e-17 Score=133.14 Aligned_cols=105 Identities=40% Similarity=0.742 Sum_probs=94.6
Q ss_pred cCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcC---CCCeEEEEEeCccchhhHhhcCCccccEEEEE
Q 020926 107 LTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTL---EDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 183 (319)
Q Consensus 107 l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~---~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~ 183 (319)
++.+|++.++ +....++|.|||+||+..+.++|+|++.|..++. ++.+++++|||+.+.+++.+|.|..|||+.+|
T Consensus 1 lt~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf 79 (375)
T KOG0912|consen 1 LTSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF 79 (375)
T ss_pred CccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee
Confidence 4567888888 7789999999999999999999999999998753 36899999999999999999999999999999
Q ss_pred eCCCcCeeecCCCCCHHHHHHHHHHhhCC
Q 020926 184 PKGNKDGEEYGGGRDLEDFVSFINEKCGT 212 (319)
Q Consensus 184 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~~ 212 (319)
.+|......|.|.|+.+.|.+||++....
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhcc
Confidence 99976667899999999999999987643
No 91
>PRK10996 thioredoxin 2; Provisional
Probab=99.69 E-value=1.3e-16 Score=123.38 Aligned_cols=85 Identities=21% Similarity=0.428 Sum_probs=77.2
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|.||++||++|+.+.|.|.++++.+.+ .+.++.||+++++.++++|+|.++||+++|++|. ...++.|..+.+.
T Consensus 54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~-~v~~~~G~~~~e~ 130 (139)
T PRK10996 54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQ-VVDMLNGAVPKAP 130 (139)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCE-EEEEEcCCCCHHH
Confidence 589999999999999999999999998754 5999999999999999999999999999998776 4477889999999
Q ss_pred HHHHHHhc
Q 020926 83 LAEYVNNE 90 (319)
Q Consensus 83 i~~~i~~~ 90 (319)
|.+|+++.
T Consensus 131 l~~~l~~~ 138 (139)
T PRK10996 131 FDSWLNEA 138 (139)
T ss_pred HHHHHHHh
Confidence 99999864
No 92
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.67 E-value=2.3e-16 Score=116.07 Aligned_cols=84 Identities=24% Similarity=0.375 Sum_probs=73.2
Q ss_pred ceEEEEEcCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeccc----chhhhhhcCCCcCCeEEeccC-CCCCCccc
Q 020926 3 LNAFCVKCDRCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDE----HKSLCSKYGVQGYPTIQWFPK-GSLEPKKY 74 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~---~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~~~-~~~~~~~y 74 (319)
.++|+||++||++|+.+.|.+ .++++.+.+ .+.++.||+++ ...++++|+|+++||+++|++ ++....++
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~ 90 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRL 90 (104)
T ss_pred eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCccc
Confidence 479999999999999999988 678888754 69999999987 578999999999999999986 44466889
Q ss_pred CCCCChHHHHHHHH
Q 020926 75 EGPRSTEALAEYVN 88 (319)
Q Consensus 75 ~g~~~~~~i~~~i~ 88 (319)
.|..+.+.|.++++
T Consensus 91 ~G~~~~~~l~~~l~ 104 (104)
T cd02953 91 PGFLTADEFLEALE 104 (104)
T ss_pred ccccCHHHHHHHhC
Confidence 99999999998873
No 93
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.67 E-value=3.5e-16 Score=113.61 Aligned_cols=94 Identities=24% Similarity=0.590 Sum_probs=78.4
Q ss_pred ccChHHHhhcC-CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCC
Q 020926 109 ADNFDEIVLDK-SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 187 (319)
Q Consensus 109 ~~~f~~~~~~~-~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~ 187 (319)
.++|++.+... +++++|.||++||++|+.+.|.+++++..+ .+++.++.+|++.+++++++|+|.++||+++|.+|
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~--~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g- 78 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA--FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG- 78 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh--CCceEEEEEccccCHHHHHhcCCccccEEEEEECC-
Confidence 45677777444 589999999999999999999999999987 35899999999999999999999999999999876
Q ss_pred cCeeecCCCCCHHHHHHHH
Q 020926 188 KDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 188 ~~~~~~~g~~~~~~l~~~i 206 (319)
+....+.| .+.+.|.+.|
T Consensus 79 ~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEEEEeC-CCHHHHHHhh
Confidence 45555565 4666666654
No 94
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.67 E-value=5.6e-16 Score=115.34 Aligned_cols=96 Identities=28% Similarity=0.372 Sum_probs=81.5
Q ss_pred hHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCc-Ce
Q 020926 112 FDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DG 190 (319)
Q Consensus 112 f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-~~ 190 (319)
|.+.+ ..+..++|.||++||++|+.+.|.+++++..+ +.+.+..+|.+.+++++++|+|.++||+++|++|+. ..
T Consensus 15 ~~~~l-~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~---~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~ 90 (113)
T cd02975 15 FFKEM-KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS---DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGG 90 (113)
T ss_pred HHHHh-CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc---CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecce
Confidence 43433 45667899999999999999999999999876 468899999999999999999999999999988754 33
Q ss_pred eecCCCCCHHHHHHHHHHhhC
Q 020926 191 EEYGGGRDLEDFVSFINEKCG 211 (319)
Q Consensus 191 ~~~~g~~~~~~l~~~i~~~~~ 211 (319)
..+.|..+..++.+||.....
T Consensus 91 ~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 91 IRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEEEecCchHHHHHHHHHHHh
Confidence 478899999999999987653
No 95
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.67 E-value=5.9e-16 Score=112.31 Aligned_cols=93 Identities=28% Similarity=0.557 Sum_probs=82.7
Q ss_pred hHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCee
Q 020926 112 FDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 191 (319)
Q Consensus 112 f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~ 191 (319)
....+.+.++++++.||++||++|+.+.|.++++++.+. +++.++.+|++++++++.+++|.++|++++|++| +...
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g-~~v~ 81 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFD--GAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK-ELVK 81 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhC--CceEEEEEECCCCHHHHHHCCCeeccEEEEEECC-eEEE
Confidence 345555788999999999999999999999999999985 3699999999999999999999999999999865 6778
Q ss_pred ecCCCCCHHHHHHHHH
Q 020926 192 EYGGGRDLEDFVSFIN 207 (319)
Q Consensus 192 ~~~g~~~~~~l~~~i~ 207 (319)
.+.|..+.++|.+||+
T Consensus 82 ~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 EISGVKMKSEYREFIE 97 (97)
T ss_pred EEeCCccHHHHHHhhC
Confidence 8999999999998873
No 96
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.67 E-value=2.5e-16 Score=119.89 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=72.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEE-eccCCCCCCcccCC-----
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQ-WFPKGSLEPKKYEG----- 76 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~-~~~~~~~~~~~y~g----- 76 (319)
+++|.|||+||++|+.+.|.++++++.+.+ .+.|++||++++++++..|+|++.|+++ +|++|.....+..|
T Consensus 25 lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~ 102 (142)
T PLN00410 25 LVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKI 102 (142)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeEEEEEeccccccc
Confidence 689999999999999999999999999854 4888999999999999999999776666 88888644566667
Q ss_pred ---CCChHHHHHHHHhc
Q 020926 77 ---PRSTEALAEYVNNE 90 (319)
Q Consensus 77 ---~~~~~~i~~~i~~~ 90 (319)
..+.++|.+-++..
T Consensus 103 ~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 103 NWALKDKQEFIDIVETV 119 (142)
T ss_pred ccccCCHHHHHHHHHHH
Confidence 46777887777664
No 97
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.66 E-value=7.9e-16 Score=123.15 Aligned_cols=104 Identities=21% Similarity=0.332 Sum_probs=85.8
Q ss_pred CCCceEEcCc-cChHHHhhcCC--CcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCcc
Q 020926 100 VPSNVVVLTA-DNFDEIVLDKS--KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG 176 (319)
Q Consensus 100 ~~~~v~~l~~-~~f~~~~~~~~--~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~ 176 (319)
....+.+++. ++|...+...+ .+++|.||++||++|+.+.|.|.++|..+ +.+.|++||++.+ +++.+|+|.+
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~---~~vkF~kVd~d~~-~l~~~f~v~~ 135 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY---PAVKFCKIRASAT-GASDEFDTDA 135 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHC---CCeEEEEEeccch-hhHHhCCCCC
Confidence 3567889988 99999985444 48999999999999999999999999998 4699999999987 8999999999
Q ss_pred ccEEEEEeCCCcCeeecCC-------CCCHHHHHHHHHH
Q 020926 177 FPTLKFFPKGNKDGEEYGG-------GRDLEDFVSFINE 208 (319)
Q Consensus 177 ~Pti~~~~~g~~~~~~~~g-------~~~~~~l~~~i~~ 208 (319)
+||+++|.+|. ....+.| ..+.+.|..+|.+
T Consensus 136 vPTlllyk~G~-~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 136 LPALLVYKGGE-LIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCEEEEEECCE-EEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999999884 3333333 3566777776654
No 98
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.66 E-value=5.3e-16 Score=113.39 Aligned_cols=85 Identities=27% Similarity=0.485 Sum_probs=76.7
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|+||++||++|+.+.|.+.++++.+.+ .+.++.||+++++.++++|+|.++|++++|++|.. ...+.|..+.+.
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~-~~~~~g~~~~~~ 92 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE-VDRSVGALPKAA 92 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE-eeeecCCCCHHH
Confidence 589999999999999999999999988853 59999999999999999999999999999987763 467779999999
Q ss_pred HHHHHHhc
Q 020926 83 LAEYVNNE 90 (319)
Q Consensus 83 i~~~i~~~ 90 (319)
+.+|+++.
T Consensus 93 l~~~l~~~ 100 (101)
T TIGR01068 93 LKQLINKN 100 (101)
T ss_pred HHHHHHhh
Confidence 99999864
No 99
>PLN02309 5'-adenylylsulfate reductase
Probab=99.66 E-value=3.4e-16 Score=141.67 Aligned_cols=86 Identities=27% Similarity=0.527 Sum_probs=77.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecc-cchhhhh-hcCCCcCCeEEeccCCCCCCcccCC-CCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCS-KYGVQGYPTIQWFPKGSLEPKKYEG-PRS 79 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~-~~~i~~~Pt~~~~~~~~~~~~~y~g-~~~ 79 (319)
.++|+||||||++|+.+.|.|+++++.+.+ ..+.|+.|||+ .+..+|. +|+|.+|||+++|++|...+..|.| .++
T Consensus 367 ~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~-~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~ 445 (457)
T PLN02309 367 PWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRD 445 (457)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCcchHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcC
Confidence 489999999999999999999999999865 35999999999 8889996 6999999999999988766788975 799
Q ss_pred hHHHHHHHHh
Q 020926 80 TEALAEYVNN 89 (319)
Q Consensus 80 ~~~i~~~i~~ 89 (319)
.++|.+|+..
T Consensus 446 ~~~L~~fv~~ 455 (457)
T PLN02309 446 VDSLLSFVNS 455 (457)
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 100
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.65 E-value=8.8e-16 Score=114.53 Aligned_cols=83 Identities=40% Similarity=0.750 Sum_probs=68.4
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEecc--cchhhhhhcCCCcCCeEEeccCCCCC---CcccCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPKGSLE---PKKYEG 76 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~-~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~~~~~---~~~y~g 76 (319)
+++|+||++||++|+.+.|.|+++++.+++. +.+.++.+||+ .++.+|++|+|+++||+++|+++... ...|.|
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~~~~~~~~~~~~ 100 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQEG 100 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCCccCCCCCcccC
Confidence 6899999999999999999999999998653 35999999996 46789999999999999999988643 345666
Q ss_pred C-CChHHHHH
Q 020926 77 P-RSTEALAE 85 (319)
Q Consensus 77 ~-~~~~~i~~ 85 (319)
. +..+++.+
T Consensus 101 ~~~~~~~~~~ 110 (114)
T cd02992 101 PERDVNELRE 110 (114)
T ss_pred CccCHHHHHH
Confidence 6 55555543
No 101
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8.4e-16 Score=123.96 Aligned_cols=106 Identities=28% Similarity=0.558 Sum_probs=88.6
Q ss_pred CccChHHHhh-cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCC
Q 020926 108 TADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 186 (319)
Q Consensus 108 ~~~~f~~~~~-~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g 186 (319)
++..|...+. ...+.++|+|+|+||+||+...|.|..++.+| +..+|.+||+++....+..+||..+||+++|.+|
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY---p~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng 84 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY---PGAVFLKVDVDECRGTAATNGVNAMPTFIFFRNG 84 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC---cccEEEEEeHHHhhchhhhcCcccCceEEEEecC
Confidence 3456766662 34579999999999999999999999999999 5789999999999999999999999999999998
Q ss_pred CcCeeecCCCCCHHHHHHHHHHhhCCCCCCCC
Q 020926 187 NKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG 218 (319)
Q Consensus 187 ~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~ 218 (319)
. .+..+.| .++..|.+-+.++++++....+
T Consensus 85 ~-kid~~qG-Ad~~gLe~kv~~~~stsaa~~~ 114 (288)
T KOG0908|consen 85 V-KIDQIQG-ADASGLEEKVAKYASTSAASSG 114 (288)
T ss_pred e-EeeeecC-CCHHHHHHHHHHHhccCccccc
Confidence 4 4444554 6888899999998877655443
No 102
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.64 E-value=8e-16 Score=119.23 Aligned_cols=88 Identities=19% Similarity=0.328 Sum_probs=73.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc--chhhhhhcCCCcCCeEEeccCCCCCCcccCCCCCh
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 80 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~ 80 (319)
.++|+|||+||++|+.+.|.+.++++.+.+ .+.|+.||++. ...++++|+|.++||+++|+.++....++.|..+.
T Consensus 22 ~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~ 99 (142)
T cd02950 22 PTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPK 99 (142)
T ss_pred EEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCH
Confidence 589999999999999999999999999854 46677766664 45889999999999999997544455778899999
Q ss_pred HHHHHHHHhcCC
Q 020926 81 EALAEYVNNEGG 92 (319)
Q Consensus 81 ~~i~~~i~~~~~ 92 (319)
+.|.+++.....
T Consensus 100 ~~l~~~l~~l~~ 111 (142)
T cd02950 100 QVLAQNLDALVA 111 (142)
T ss_pred HHHHHHHHHHHc
Confidence 999999988554
No 103
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.64 E-value=6.4e-16 Score=139.97 Aligned_cols=86 Identities=24% Similarity=0.480 Sum_probs=75.4
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch-hhh-hhcCCCcCCeEEeccCCCCCCcccC-CCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-SLC-SKYGVQGYPTIQWFPKGSLEPKKYE-GPRS 79 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~-~l~-~~~~i~~~Pt~~~~~~~~~~~~~y~-g~~~ 79 (319)
.+||+||||||++|+.+.|.|+++++.+.+. .+.|+.|||+.+. .++ ++|+|.++||+++|++|...+..|. |.++
T Consensus 373 ~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~ 451 (463)
T TIGR00424 373 AWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRD 451 (463)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCCCCC
Confidence 4899999999999999999999999998652 4899999999763 455 7899999999999999876668897 5899
Q ss_pred hHHHHHHHHh
Q 020926 80 TEALAEYVNN 89 (319)
Q Consensus 80 ~~~i~~~i~~ 89 (319)
.++|..|++.
T Consensus 452 ~e~L~~Fv~~ 461 (463)
T TIGR00424 452 VDSLMSFVNL 461 (463)
T ss_pred HHHHHHHHHh
Confidence 9999999974
No 104
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.64 E-value=4.2e-16 Score=121.12 Aligned_cols=72 Identities=19% Similarity=0.320 Sum_probs=64.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCc------CCeEEeccCCCCCCcccCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG------YPTIQWFPKGSLEPKKYEG 76 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~------~Pt~~~~~~~~~~~~~y~g 76 (319)
+++|+||||||++|+.+.|.|+++++.+.+ .++.|++||++++++++++|+|.+ +||+++|++|... .++.|
T Consensus 49 ~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v-~r~~G 126 (152)
T cd02962 49 TWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEV-ARRPY 126 (152)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEE-EEEec
Confidence 589999999999999999999999999854 359999999999999999999988 9999999988743 55554
No 105
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.64 E-value=5.4e-16 Score=112.54 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=63.7
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCccc
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKY 74 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y 74 (319)
+++|.|+|+|||+|+.+.|.+.+++..+++ .+.|+.||+++.+++++.|+|...||+++|.+|......|
T Consensus 16 lVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~d~ 85 (114)
T cd02986 16 VLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKVDY 85 (114)
T ss_pred EEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEEec
Confidence 689999999999999999999999999843 3999999999999999999999999999999987554555
No 106
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.63 E-value=9.3e-16 Score=111.25 Aligned_cols=83 Identities=25% Similarity=0.485 Sum_probs=75.2
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|.||++||++|+.+.|.++++++.+.+ .+.++.+|++++++++.+++|.++|++++|++|. ...++.|..+.+.
T Consensus 15 ~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~-~v~~~~g~~~~~~ 91 (97)
T cd02949 15 LILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE-LVKEISGVKMKSE 91 (97)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe-EEEEEeCCccHHH
Confidence 479999999999999999999999999853 5999999999999999999999999999998775 5588889999999
Q ss_pred HHHHHH
Q 020926 83 LAEYVN 88 (319)
Q Consensus 83 i~~~i~ 88 (319)
|.+|++
T Consensus 92 ~~~~l~ 97 (97)
T cd02949 92 YREFIE 97 (97)
T ss_pred HHHhhC
Confidence 998873
No 107
>PTZ00051 thioredoxin; Provisional
Probab=99.63 E-value=2e-15 Score=109.83 Aligned_cols=90 Identities=31% Similarity=0.684 Sum_probs=76.1
Q ss_pred CccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCC
Q 020926 108 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 187 (319)
Q Consensus 108 ~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~ 187 (319)
+.++|.+.+ +.++.+++.||++||++|+.+.|.+.++++.+ +++.++.+|++.+.+++++|+|.++||+++|++|
T Consensus 7 ~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g- 81 (98)
T PTZ00051 7 SQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEY---TKMVFVKVDVDELSEVAEKENITSMPTFKVFKNG- 81 (98)
T ss_pred CHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc---CCcEEEEEECcchHHHHHHCCCceeeEEEEEeCC-
Confidence 345677776 77889999999999999999999999999976 3689999999999999999999999999999877
Q ss_pred cCeeecCCCCCHHHHH
Q 020926 188 KDGEEYGGGRDLEDFV 203 (319)
Q Consensus 188 ~~~~~~~g~~~~~~l~ 203 (319)
+....+.|. ..++|.
T Consensus 82 ~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 82 SVVDTLLGA-NDEALK 96 (98)
T ss_pred eEEEEEeCC-CHHHhh
Confidence 456667774 445543
No 108
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.63 E-value=9.2e-16 Score=111.54 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=70.2
Q ss_pred ceEEEEEcCC--ChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCCh
Q 020926 3 LNAFCVKCDR--CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 80 (319)
Q Consensus 3 ~~~v~Fya~~--C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~ 80 (319)
.++|.||++| ||+|+.+.|.++++++.+.+ .+.++.||+++++.++.+|+|+++||+++|++|.. ..+..|..+.
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~-v~~~~G~~~~ 105 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALLFFRDGRY-VGVLAGIRDW 105 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEE-EEEEeCccCH
Confidence 4789999997 99999999999999999854 58999999999999999999999999999999974 4677787777
Q ss_pred HHHH
Q 020926 81 EALA 84 (319)
Q Consensus 81 ~~i~ 84 (319)
+.+.
T Consensus 106 ~e~~ 109 (111)
T cd02965 106 DEYV 109 (111)
T ss_pred HHHh
Confidence 6654
No 109
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.62 E-value=2.1e-15 Score=112.22 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=60.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~ 69 (319)
.++|+||+|||++|+.+.|.++++++.+. .+.|++||+++++.++++|+|.++||+++|++|..
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~ 87 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKT 87 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEE
Confidence 58999999999999999999999999874 38999999999999999999999999999999863
No 110
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.61 E-value=1.8e-15 Score=112.63 Aligned_cols=85 Identities=21% Similarity=0.306 Sum_probs=74.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCC-CcccCCCCChH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE-PKKYEGPRSTE 81 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~-~~~y~g~~~~~ 81 (319)
.++|.||++||++|+.+.|.++++++.+ +.+.+..||.+++++++.+|+|.++||+++|++|+.. ..++.|..+..
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~---~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~ 100 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELS---DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGY 100 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhc---CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchH
Confidence 4788999999999999999999999876 3599999999999999999999999999999886533 24788988899
Q ss_pred HHHHHHHhc
Q 020926 82 ALAEYVNNE 90 (319)
Q Consensus 82 ~i~~~i~~~ 90 (319)
++.+|+...
T Consensus 101 el~~~i~~i 109 (113)
T cd02975 101 EFASLIEDI 109 (113)
T ss_pred HHHHHHHHH
Confidence 999998764
No 111
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.61 E-value=7.3e-16 Score=115.03 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=61.9
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG 76 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g 76 (319)
.++|+||+|||++|+.+.|.++++++.+. .+.|++||++++ .++++|+|.++||+++|++|... .++.|
T Consensus 26 ~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v-~~~~G 94 (113)
T cd02957 26 RVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELI-DNIVG 94 (113)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEE-EEEec
Confidence 58999999999999999999999999985 389999999998 99999999999999999998743 55555
No 112
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.60 E-value=5e-15 Score=112.72 Aligned_cols=96 Identities=27% Similarity=0.388 Sum_probs=79.8
Q ss_pred HHHhhcCC-CcEEEEEECCCCccccchHHHHH---HHHHHhcCCCCeEEEEEeCccc-------------hhhHhhcCCc
Q 020926 113 DEIVLDKS-KDVLVEFYAPWCGHCKNLAPTYE---KVAAAFTLEDDVVVANLDADKY-------------KDLAEKYGVS 175 (319)
Q Consensus 113 ~~~~~~~~-~~v~v~F~~~wC~~C~~~~~~~~---~la~~~~~~~~~~~~~vd~~~~-------------~~l~~~~~v~ 175 (319)
.... ..+ ++++|.||++||++|+.+.|.+. .+...+. .++.++.+|.+.+ .+++.+|+|.
T Consensus 7 ~~a~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 7 AEAA-ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR--AHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHH-HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH--hheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 3444 566 99999999999999999999875 5655554 3688889988754 6899999999
Q ss_pred cccEEEEEeCC-CcCeeecCCCCCHHHHHHHHHHhhC
Q 020926 176 GFPTLKFFPKG-NKDGEEYGGGRDLEDFVSFINEKCG 211 (319)
Q Consensus 176 ~~Pti~~~~~g-~~~~~~~~g~~~~~~l~~~i~~~~~ 211 (319)
++||+++|.++ ++...++.|..+.+.+.++|+...+
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 99999999987 6788889999999999999987653
No 113
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.60 E-value=2.7e-15 Score=108.91 Aligned_cols=81 Identities=22% Similarity=0.385 Sum_probs=69.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|.||++||++|+.+.|.|+++++.+ ...+.++.+|+++.++++++|+|.++||+++|.+|. ...++.| ...+.
T Consensus 16 ~v~v~f~~~~C~~C~~~~~~l~~l~~~~--~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g-~~~~~ 91 (97)
T cd02984 16 LLVLHFWAPWAEPCKQMNQVFEELAKEA--FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT-IVDRVSG-ADPKE 91 (97)
T ss_pred EEEEEEECCCCHHHHHHhHHHHHHHHHh--CCceEEEEEccccCHHHHHhcCCccccEEEEEECCE-EEEEEeC-CCHHH
Confidence 5899999999999999999999999987 346999999999999999999999999999998775 3355555 45666
Q ss_pred HHHHH
Q 020926 83 LAEYV 87 (319)
Q Consensus 83 i~~~i 87 (319)
|.+.+
T Consensus 92 l~~~~ 96 (97)
T cd02984 92 LAKKV 96 (97)
T ss_pred HHHhh
Confidence 66654
No 114
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.7e-15 Score=122.26 Aligned_cols=89 Identities=27% Similarity=0.481 Sum_probs=78.3
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
+++|+|||+|||+|++++|.|..++..|++ .+|.+||+++.+..+..+||...||+++|.+|... ..+.| .++..
T Consensus 23 ~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~ki-d~~qG-Ad~~g 97 (288)
T KOG0908|consen 23 LVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVKI-DQIQG-ADASG 97 (288)
T ss_pred EEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEEEEecCeEe-eeecC-CCHHH
Confidence 689999999999999999999999999965 89999999999999999999999999999999753 55665 67888
Q ss_pred HHHHHHhcCCCCcc
Q 020926 83 LAEYVNNEGGTNVK 96 (319)
Q Consensus 83 i~~~i~~~~~~~~~ 96 (319)
|.+.+..+......
T Consensus 98 Le~kv~~~~stsaa 111 (288)
T KOG0908|consen 98 LEEKVAKYASTSAA 111 (288)
T ss_pred HHHHHHHHhccCcc
Confidence 88888887665443
No 115
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.58 E-value=1.7e-14 Score=103.29 Aligned_cols=91 Identities=38% Similarity=0.805 Sum_probs=80.4
Q ss_pred ChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCe
Q 020926 111 NFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG 190 (319)
Q Consensus 111 ~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~ 190 (319)
+|.+.+ ..+++++|.||++||++|+.+.+.+.+++.. .+++.++.+|++.+.+++++|++.++|++++|.+| ...
T Consensus 2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g-~~~ 76 (93)
T cd02947 2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE---YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG-KEV 76 (93)
T ss_pred chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH---CCCceEEEEECCCChhHHHhcCcccccEEEEEECC-EEE
Confidence 566666 4458999999999999999999999999987 36799999999999999999999999999999887 466
Q ss_pred eecCCCCCHHHHHHHH
Q 020926 191 EEYGGGRDLEDFVSFI 206 (319)
Q Consensus 191 ~~~~g~~~~~~l~~~i 206 (319)
..+.|..+.+.|.+||
T Consensus 77 ~~~~g~~~~~~l~~~i 92 (93)
T cd02947 77 DRVVGADPKEELEEFL 92 (93)
T ss_pred EEEecCCCHHHHHHHh
Confidence 7788988889999887
No 116
>PTZ00051 thioredoxin; Provisional
Probab=99.58 E-value=4e-15 Score=108.22 Aligned_cols=77 Identities=31% Similarity=0.539 Sum_probs=66.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|+||++||++|+.+.|.|.++++.+. ++.++.||++++..++++|+|.++||+++|++|.. ...+.|. ..+.
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~G~-~~~~ 94 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSV-VDTLLGA-NDEA 94 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeE-EEEEeCC-CHHH
Confidence 57999999999999999999999999764 49999999999999999999999999999988863 3666674 4454
Q ss_pred HH
Q 020926 83 LA 84 (319)
Q Consensus 83 i~ 84 (319)
|.
T Consensus 95 ~~ 96 (98)
T PTZ00051 95 LK 96 (98)
T ss_pred hh
Confidence 43
No 117
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.58 E-value=1.7e-14 Score=108.55 Aligned_cols=99 Identities=17% Similarity=0.260 Sum_probs=76.4
Q ss_pred ceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc-----------hhhHhh
Q 020926 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------KDLAEK 171 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~-----------~~l~~~ 171 (319)
....++.++|.+.+ .+++.++|+|+++|||+|+.+.|.+.++++.. ++.+..+|++.+ .++.++
T Consensus 7 ~~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 7 GLEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred cceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 45667888898888 67788999999999999999999999999973 344666666532 245566
Q ss_pred cC----CccccEEEEEeCCCcCeeecCC-CCCHHHHHHHHH
Q 020926 172 YG----VSGFPTLKFFPKGNKDGEEYGG-GRDLEDFVSFIN 207 (319)
Q Consensus 172 ~~----v~~~Pti~~~~~g~~~~~~~~g-~~~~~~l~~~i~ 207 (319)
|+ |.++||+++|++|. .+....| ..+.++|.+|+.
T Consensus 82 ~~i~~~i~~~PT~v~~k~Gk-~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDGK-QVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCcccCCCCCEEEEEeCCe-EEEEEeCCCCCHHHHHHHhh
Confidence 65 44599999999884 5555666 567999998863
No 118
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.57 E-value=3e-13 Score=110.09 Aligned_cols=173 Identities=24% Similarity=0.379 Sum_probs=140.6
Q ss_pred hhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCC-CChHHHHHHHHhcCCCCcc
Q 020926 18 KLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP-RSTEALAEYVNNEGGTNVK 96 (319)
Q Consensus 18 ~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~-~~~~~i~~~i~~~~~~~~~ 96 (319)
.....|.++|+.+.+ .+.|+.+. +.++++++++.. |++++|+++......|.|. .+.+.|.+||....-|
T Consensus 7 ~~~~~f~~~A~~~~~--~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P--- 77 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKG--DYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFP--- 77 (184)
T ss_dssp HHHHHHHHHHHHHTT--TSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSST---
T ss_pred HHHHHHHHHHHhCcC--CcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccc---
Confidence 345678999999964 48888876 677999999998 9999999866566889998 8999999999998654
Q ss_pred ccCCCCceEEcCccChHHHhhcCCCc-EEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCc
Q 020926 97 IAAVPSNVVVLTADNFDEIVLDKSKD-VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 175 (319)
Q Consensus 97 ~~~~~~~v~~l~~~~f~~~~~~~~~~-v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~ 175 (319)
.+.++|.+++..+. ..+.+ +++.|...-......+...+..+|..++ +.+.|+.+|++..+.+++.+|++
T Consensus 78 ------~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~~f~~~d~~~~~~~~~~~~i~ 148 (184)
T PF13848_consen 78 ------LVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK--GKINFVYVDADDFPRLLKYFGID 148 (184)
T ss_dssp ------SCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT--TTSEEEEEETTTTHHHHHHTTTT
T ss_pred ------cccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC--CeEEEEEeehHHhHHHHHHcCCC
Confidence 47889999999998 55544 7888877666677788888999999886 56999999999889999999998
Q ss_pred --cccEEEEEeCCC-cCeeecCCCCCHHHHHHHHHH
Q 020926 176 --GFPTLKFFPKGN-KDGEEYGGGRDLEDFVSFINE 208 (319)
Q Consensus 176 --~~Pti~~~~~g~-~~~~~~~g~~~~~~l~~~i~~ 208 (319)
.+|+++++.... .....+.|..+.+.|.+|+++
T Consensus 149 ~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 149 EDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 899999998433 222334889999999999974
No 119
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.56 E-value=2e-14 Score=116.47 Aligned_cols=102 Identities=18% Similarity=0.289 Sum_probs=82.2
Q ss_pred CCCceEEcCccChHHHhhcCC--CcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccc
Q 020926 100 VPSNVVVLTADNFDEIVLDKS--KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF 177 (319)
Q Consensus 100 ~~~~v~~l~~~~f~~~~~~~~--~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~ 177 (319)
....+..++..+|...+...+ .+|+|.||++||++|+.+.|.|.++|..| +.+.|++||++.. +.+|++.++
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~---~~vkFvkI~ad~~---~~~~~i~~l 153 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKF---PDTKFVKIISTQC---IPNYPDKNL 153 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHC---CCCEEEEEEhHHh---HhhCCCCCC
Confidence 456789999999998775543 58999999999999999999999999998 4689999998753 589999999
Q ss_pred cEEEEEeCCCcCeeecCC-------CCCHHHHHHHHHH
Q 020926 178 PTLKFFPKGNKDGEEYGG-------GRDLEDFVSFINE 208 (319)
Q Consensus 178 Pti~~~~~g~~~~~~~~g-------~~~~~~l~~~i~~ 208 (319)
||+++|++|. .+..+.| ..+.++|..+|.+
T Consensus 154 PTlliyk~G~-~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 154 PTILVYRNGD-IVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CEEEEEECCE-EEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999884 4444544 3556666666543
No 120
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.55 E-value=2.3e-14 Score=109.02 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=73.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHH---HHHHHhhcCCceEEEEEecccc-------------hhhhhhcCCCcCCeEEeccC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYE---KLGASFKKAKSVLIGKVDCDEH-------------KSLCSKYGVQGYPTIQWFPK 66 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~---~~a~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~i~~~Pt~~~~~~ 66 (319)
.++|.||++||++|+.+.|.+. .+.+.+.+ .+.++.||.+.+ ..++.+|+|.++||+++|++
T Consensus 16 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~ 93 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDP 93 (125)
T ss_pred cEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcC
Confidence 5899999999999999999885 56666543 588999998864 68999999999999999998
Q ss_pred C-CCCCcccCCCCChHHHHHHHHhcC
Q 020926 67 G-SLEPKKYEGPRSTEALAEYVNNEG 91 (319)
Q Consensus 67 ~-~~~~~~y~g~~~~~~i~~~i~~~~ 91 (319)
+ +....++.|..+.+.+.++++...
T Consensus 94 ~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 94 EGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred CCCceeEEecCCCCHHHHHHHHHHHH
Confidence 7 556678889999999998888643
No 121
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.55 E-value=1.5e-14 Score=115.78 Aligned_cols=82 Identities=13% Similarity=0.225 Sum_probs=69.2
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccC-------
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYE------- 75 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~------- 75 (319)
+++|+||+|||++|+.+.|.|.+++..+. .+.|++||+++. .++.+|+|.++||+++|++|... .++.
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v-~~~vG~~~~~g 159 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASAT-GASDEFDTDALPALLVYKGGELI-GNFVRVTEDLG 159 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEE-EEEechHHhcC
Confidence 68999999999999999999999999984 499999999987 89999999999999999998743 2222
Q ss_pred CCCChHHHHHHHHh
Q 020926 76 GPRSTEALAEYVNN 89 (319)
Q Consensus 76 g~~~~~~i~~~i~~ 89 (319)
...+.+.|..++.+
T Consensus 160 ~~f~~~~le~~L~~ 173 (175)
T cd02987 160 EDFDAEDLESFLVE 173 (175)
T ss_pred CCCCHHHHHHHHHh
Confidence 24567777777654
No 122
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.53 E-value=7.8e-14 Score=102.33 Aligned_cols=88 Identities=19% Similarity=0.329 Sum_probs=76.2
Q ss_pred CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCc--cccEEEEEeCCCcCeeecCC-C
Q 020926 120 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--GFPTLKFFPKGNKDGEEYGG-G 196 (319)
Q Consensus 120 ~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~--~~Pti~~~~~g~~~~~~~~g-~ 196 (319)
++++++.|+++||++|+.+.|.++++|++++ +.+.|+.+|+++++++++.|++. ++|++++++.++...+.+.+ .
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~--~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK--GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC--CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 6899999999999999999999999999997 56999999999999999999999 99999999883222344444 4
Q ss_pred CCHHHHHHHHHHh
Q 020926 197 RDLEDFVSFINEK 209 (319)
Q Consensus 197 ~~~~~l~~~i~~~ 209 (319)
.+.++|.+||.+.
T Consensus 90 ~~~~~l~~fi~~~ 102 (103)
T cd02982 90 LTAESLEEFVEDF 102 (103)
T ss_pred cCHHHHHHHHHhh
Confidence 5999999999864
No 123
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.53 E-value=3.5e-14 Score=101.60 Aligned_cols=82 Identities=33% Similarity=0.552 Sum_probs=73.2
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|.||++||++|+.+.|.+.++++. .+++.++.+|++.++.++++|++.++|++++|.+|. ....+.|..+.+.
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~~ 87 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEE---YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EVDRVVGADPKEE 87 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHH---CCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EEEEEecCCCHHH
Confidence 479999999999999999999999988 246999999999999999999999999999998886 4477788888899
Q ss_pred HHHHHH
Q 020926 83 LAEYVN 88 (319)
Q Consensus 83 i~~~i~ 88 (319)
|.+|++
T Consensus 88 l~~~i~ 93 (93)
T cd02947 88 LEEFLE 93 (93)
T ss_pred HHHHhC
Confidence 988873
No 124
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.51 E-value=8.5e-14 Score=97.61 Aligned_cols=79 Identities=18% Similarity=0.328 Sum_probs=69.5
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHH
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 83 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i 83 (319)
.+..||++||++|+.+.|.++++++.++. .+.+..||.+++++++++|++.++||+++ +|. .++.|..+.+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~---~~~~G~~~~~~l 74 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD---VEFIGAPTKEEL 74 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE---EEEecCCCHHHH
Confidence 46789999999999999999999998853 58999999999999999999999999986 443 477898899999
Q ss_pred HHHHHh
Q 020926 84 AEYVNN 89 (319)
Q Consensus 84 ~~~i~~ 89 (319)
.++++.
T Consensus 75 ~~~l~~ 80 (82)
T TIGR00411 75 VEAIKK 80 (82)
T ss_pred HHHHHh
Confidence 998875
No 125
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.48 E-value=3.3e-13 Score=94.63 Aligned_cols=80 Identities=25% Similarity=0.423 Sum_probs=70.3
Q ss_pred EEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHH
Q 020926 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF 202 (319)
Q Consensus 123 v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l 202 (319)
.+..||++||++|+.+.|.+++++..+. ..+.+..||.+++++++++|++.++||+++ +| + ..+.|..+.+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g-~--~~~~G~~~~~~l 74 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG--DAVEVEYINVMENPQKAMEYGIMAVPAIVI--NG-D--VEFIGAPTKEEL 74 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc--CceEEEEEeCccCHHHHHHcCCccCCEEEE--CC-E--EEEecCCCHHHH
Confidence 4678999999999999999999999884 458899999999999999999999999986 44 2 478899999999
Q ss_pred HHHHHHh
Q 020926 203 VSFINEK 209 (319)
Q Consensus 203 ~~~i~~~ 209 (319)
.++|.+.
T Consensus 75 ~~~l~~~ 81 (82)
T TIGR00411 75 VEAIKKR 81 (82)
T ss_pred HHHHHhh
Confidence 9998764
No 126
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.47 E-value=1.8e-12 Score=122.87 Aligned_cols=184 Identities=15% Similarity=0.226 Sum_probs=144.4
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEecc-CCCCCCcccCCCCChHH
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFP-KGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~-~~~~~~~~y~g~~~~~~ 82 (319)
.++.|+.+.|..|..+...+++++.. .++|.+...|..++.+++++|+|...|++.+++ ++.....+|.|-..-.+
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~---s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~E 445 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASL---SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHE 445 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhc---CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHh
Confidence 46788888999999999999999854 246889889999999999999999999999995 44444589999888888
Q ss_pred HHHHHHhcCCCCccccCCCCceEEcCccChHHHhhcCCCcE-EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEe
Q 020926 83 LAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDV-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 161 (319)
Q Consensus 83 i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v-~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd 161 (319)
+..|+......... -..++.+..+.+. .-++++ +-.|.+++|++|......+.+++... +++..-.+|
T Consensus 446 f~s~i~~i~~~~~~-------~~~l~~~~~~~i~-~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~---~~i~~~~i~ 514 (555)
T TIGR03143 446 LNSFILALYNAAGP-------GQPLGEELLEKIK-KITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN---PNVEAEMID 514 (555)
T ss_pred HHHHHHHHHHhcCC-------CCCCCHHHHHHHH-hcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC---CCceEEEEE
Confidence 88887774332111 1234444444443 334555 55678999999999999999998875 578999999
Q ss_pred CccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHH
Q 020926 162 ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 162 ~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i 206 (319)
.+..++++++|+|.++|++++- | ...+.|..+.+++.+||
T Consensus 515 ~~~~~~~~~~~~v~~vP~~~i~--~---~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 515 VSHFPDLKDEYGIMSVPAIVVD--D---QQVYFGKKTIEEMLELI 554 (555)
T ss_pred CcccHHHHHhCCceecCEEEEC--C---EEEEeeCCCHHHHHHhh
Confidence 9999999999999999998773 3 24477988999999886
No 127
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.47 E-value=2.6e-13 Score=99.52 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=73.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCC--cCCeEEeccCCCCCCcccC-CCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ--GYPTIQWFPKGSLEPKKYE-GPRS 79 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~~~~~~~~y~-g~~~ 79 (319)
.+++.||++||++|+.+.|.+.++|++++ +++.|+.||+++++.+++.|+|. ++|++++++.+......+. |..+
T Consensus 14 ~~~~~f~~~~~~~~~~~~~~~~~vA~~~~--~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 14 PLLVLFYNKDDSESEELRERFKEVAKKFK--GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CEEEEEEcCChhhHHHHHHHHHHHHHHhC--CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 57899999999999999999999999996 46999999999999999999999 9999999998321223344 4458
Q ss_pred hHHHHHHHHh
Q 020926 80 TEALAEYVNN 89 (319)
Q Consensus 80 ~~~i~~~i~~ 89 (319)
.++|.+|+.+
T Consensus 92 ~~~l~~fi~~ 101 (103)
T cd02982 92 AESLEEFVED 101 (103)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 128
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.47 E-value=3e-13 Score=112.62 Aligned_cols=93 Identities=25% Similarity=0.375 Sum_probs=78.0
Q ss_pred CCcEEEEEEC---CCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCC
Q 020926 120 SKDVLVEFYA---PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 196 (319)
Q Consensus 120 ~~~v~v~F~~---~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~ 196 (319)
+...++.|++ +||++|+.+.|.+++++..+. .-.+.++.+|.+++++++++|+|.++||+++|++|.....++.|.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 4445667888 999999999999999999983 224667888888999999999999999999999885434689999
Q ss_pred CCHHHHHHHHHHhhCCC
Q 020926 197 RDLEDFVSFINEKCGTS 213 (319)
Q Consensus 197 ~~~~~l~~~i~~~~~~~ 213 (319)
.+.+++.+||...++..
T Consensus 98 ~~~~~l~~~i~~~~~~~ 114 (215)
T TIGR02187 98 PAGYEFAALIEDIVRVS 114 (215)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999886543
No 129
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.46 E-value=1.6e-13 Score=102.59 Aligned_cols=93 Identities=23% Similarity=0.461 Sum_probs=68.0
Q ss_pred cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCcc--ccEEEEEeCCCcCe---ee
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG--FPTLKFFPKGNKDG---EE 192 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~--~Pti~~~~~g~~~~---~~ 192 (319)
..+++++|.||++||++|+.+.|.+.+.+.......++..+.+|.+. ....+.|++.+ +||+++|.++++.. ..
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 67899999999999999999999999987765433355555555432 24567899986 99999997555543 35
Q ss_pred cCCCCCHHHHHHHHHHhhC
Q 020926 193 YGGGRDLEDFVSFINEKCG 211 (319)
Q Consensus 193 ~~g~~~~~~l~~~i~~~~~ 211 (319)
..|..+.+.+.+.|....+
T Consensus 96 ~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 96 KKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCCccccccCCCHHHHHh
Confidence 6677777777766665443
No 130
>PTZ00062 glutaredoxin; Provisional
Probab=99.46 E-value=4.6e-13 Score=108.90 Aligned_cols=92 Identities=10% Similarity=0.161 Sum_probs=77.8
Q ss_pred CccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCC
Q 020926 108 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 187 (319)
Q Consensus 108 ~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~ 187 (319)
+.++|.+.+.+..+.++++|+|+||++|+.+.|.+.++++.| +++.|+.||.+ |+|.++||+++|++|.
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~---~~~~F~~V~~d--------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF---PSLEFYVVNLA--------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC---CCcEEEEEccc--------cCcccceEEEEEECCE
Confidence 456777777433478999999999999999999999999998 57999999977 9999999999999884
Q ss_pred cCeeecCCCCCHHHHHHHHHHhhCC
Q 020926 188 KDGEEYGGGRDLEDFVSFINEKCGT 212 (319)
Q Consensus 188 ~~~~~~~g~~~~~~l~~~i~~~~~~ 212 (319)
...++.| .++..+.+++.++.++
T Consensus 74 -~i~r~~G-~~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 74 -LINSLEG-CNTSTLVSFIRGWAQK 96 (204)
T ss_pred -EEeeeeC-CCHHHHHHHHHHHcCC
Confidence 5666676 4699999999888764
No 131
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.45 E-value=2.4e-13 Score=100.86 Aligned_cols=78 Identities=21% Similarity=0.442 Sum_probs=65.6
Q ss_pred CccChHHHhhc-CCCcEEEEEEC-------CCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc-------chhhHhhc
Q 020926 108 TADNFDEIVLD-KSKDVLVEFYA-------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------YKDLAEKY 172 (319)
Q Consensus 108 ~~~~f~~~~~~-~~~~v~v~F~~-------~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~-------~~~l~~~~ 172 (319)
+.++|.+.+.. ++++++|.||| +||++|+.+.|.+++++..+. +++.|++||++. +.++..+|
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~--~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP--EDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC--CCCEEEEEEcCCcccccCcchhhHhcc
Confidence 34566777743 36899999999 999999999999999999985 368899999875 45899999
Q ss_pred CCc-cccEEEEEeCCC
Q 020926 173 GVS-GFPTLKFFPKGN 187 (319)
Q Consensus 173 ~v~-~~Pti~~~~~g~ 187 (319)
+|. ++||+++|..|+
T Consensus 86 ~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 86 KLTTGVPTLLRWKTPQ 101 (119)
T ss_pred CcccCCCEEEEEcCCc
Confidence 998 999999997663
No 132
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.45 E-value=2.7e-13 Score=102.07 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=63.1
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch-----------hhhhhcC----CCcCCeEEeccCCC
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-----------SLCSKYG----VQGYPTIQWFPKGS 68 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~-----------~l~~~~~----i~~~Pt~~~~~~~~ 68 (319)
.+|+|+++|||+|+.+.|.+.++++.. ++.+..||.+.++ ++.+.|+ |.++||+++|++|.
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk 101 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGK 101 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCe
Confidence 689999999999999999999999873 3667888877543 4556665 55699999999998
Q ss_pred CCCcccCC-CCChHHHHHHHH
Q 020926 69 LEPKKYEG-PRSTEALAEYVN 88 (319)
Q Consensus 69 ~~~~~y~g-~~~~~~i~~~i~ 88 (319)
.. .+..| ..+.++|.+|+.
T Consensus 102 ~v-~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 102 QV-SVRCGSSTTAQELQDIAA 121 (122)
T ss_pred EE-EEEeCCCCCHHHHHHHhh
Confidence 54 55556 567899988864
No 133
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=1.1e-13 Score=124.42 Aligned_cols=111 Identities=32% Similarity=0.650 Sum_probs=92.1
Q ss_pred CCCCceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhc-CCCCeEEEEEeCc--cchhhHhhcCCc
Q 020926 99 AVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDAD--KYKDLAEKYGVS 175 (319)
Q Consensus 99 ~~~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~-~~~~~~~~~vd~~--~~~~l~~~~~v~ 175 (319)
...+.++.|+.++|+..+..+.+..+|.||++|||+|+.++|.|+++|+... ..+-+.++.|||. .|..+|++|+|+
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 3458899999999999998788899999999999999999999999999874 3456889999997 688999999999
Q ss_pred cccEEEEEeCCCcC---eeecCCCCCHHHHHHHHHHh
Q 020926 176 GFPTLKFFPKGNKD---GEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 176 ~~Pti~~~~~g~~~---~~~~~g~~~~~~l~~~i~~~ 209 (319)
+||++.+|+.+... ...+.|.....++.+.+.+.
T Consensus 116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~ 152 (606)
T KOG1731|consen 116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRT 152 (606)
T ss_pred CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHH
Confidence 99999999877432 34566666666666666543
No 134
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.43 E-value=3.1e-13 Score=109.64 Aligned_cols=80 Identities=19% Similarity=0.268 Sum_probs=65.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCC------
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG------ 76 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g------ 76 (319)
+|+|+||++||++|+.+.|.|.++|..+. .+.|++||++.. +..|+|.++||+++|++|... .++.|
T Consensus 104 ~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~~v-~~ivG~~~~gg 176 (192)
T cd02988 104 WVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC---IPNYPDKNLPTILVYRNGDIV-KQFIGLLEFGG 176 (192)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---HhhCCCCCCCEEEEEECCEEE-EEEeCchhhCC
Confidence 68999999999999999999999999984 399999999854 589999999999999998743 33333
Q ss_pred -CCChHHHHHHHHh
Q 020926 77 -PRSTEALAEYVNN 89 (319)
Q Consensus 77 -~~~~~~i~~~i~~ 89 (319)
..+.++|..++.+
T Consensus 177 ~~~~~~~lE~~L~~ 190 (192)
T cd02988 177 MNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCHHHHHHHHHh
Confidence 3566777666653
No 135
>PHA02125 thioredoxin-like protein
Probab=99.39 E-value=1.1e-12 Score=90.02 Aligned_cols=69 Identities=25% Similarity=0.444 Sum_probs=53.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCC-CChHHH
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP-RSTEAL 83 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~-~~~~~i 83 (319)
++.||++||++|+.+.|.|++++ +.++.||++++.+++++|+|.++||++ .|. ...++.|. .+...|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~-~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTS-TLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCE-EEEEEeCCCCcHHHH
Confidence 79999999999999999997652 457899999999999999999999987 232 22455563 333444
Q ss_pred HH
Q 020926 84 AE 85 (319)
Q Consensus 84 ~~ 85 (319)
.+
T Consensus 70 ~~ 71 (75)
T PHA02125 70 KE 71 (75)
T ss_pred HH
Confidence 43
No 136
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.39 E-value=1.7e-12 Score=96.40 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=57.3
Q ss_pred ceEEEEEc-------CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc-------chhhhhhcCCC-cCCeEEeccCC
Q 020926 3 LNAFCVKC-------DRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------HKSLCSKYGVQ-GYPTIQWFPKG 67 (319)
Q Consensus 3 ~~~v~Fya-------~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~-------~~~l~~~~~i~-~~Pt~~~~~~~ 67 (319)
.++|.||| +||++|+.+.|.++++++.+++ ++.|+.||+++ +.++..+++|. ++||+++|+.|
T Consensus 23 ~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 23 PIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred eEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC
Confidence 47999999 9999999999999999999853 58999999976 46899999998 99999999776
Q ss_pred C
Q 020926 68 S 68 (319)
Q Consensus 68 ~ 68 (319)
+
T Consensus 101 ~ 101 (119)
T cd02952 101 Q 101 (119)
T ss_pred c
Confidence 5
No 137
>PHA02125 thioredoxin-like protein
Probab=99.33 E-value=6.1e-12 Score=86.37 Aligned_cols=70 Identities=24% Similarity=0.490 Sum_probs=54.7
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCC-CCHHHH
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDF 202 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~-~~~~~l 202 (319)
++.||++||++|+.+.|.|++++ +.++.||.+.+.+++++|+|.++||++ .| +....+.|. .+..+|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g-~~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NT-STLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CC-EEEEEEeCCCCcHHHH
Confidence 68999999999999999997652 457899999999999999999999987 33 334456663 444555
Q ss_pred HHH
Q 020926 203 VSF 205 (319)
Q Consensus 203 ~~~ 205 (319)
.+-
T Consensus 70 ~~~ 72 (75)
T PHA02125 70 KEK 72 (75)
T ss_pred HHH
Confidence 543
No 138
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.33 E-value=1.8e-11 Score=95.48 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=65.9
Q ss_pred cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc----------chhhH-hhc---CCccccEEEEE
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------YKDLA-EKY---GVSGFPTLKFF 183 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~----------~~~l~-~~~---~v~~~Pti~~~ 183 (319)
..++..+|+||++||++|+...|.+.++++++. -.+..+.+|-.. ..+.. ..| ++.++||.+++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 345667999999999999999999999999873 234444444221 12333 345 78999999999
Q ss_pred eCCCcC-eeecCCCCCHHHHHHHHHHh
Q 020926 184 PKGNKD-GEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 184 ~~g~~~-~~~~~g~~~~~~l~~~i~~~ 209 (319)
++.+.. ...+.|..+.+++.+.|.+.
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 876543 44688999999998888753
No 139
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.33 E-value=4.7e-12 Score=87.04 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=57.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCC-CChHHH
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP-RSTEAL 83 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~-~~~~~i 83 (319)
-|.||++||++|+.+.|.++++++++.. .+.+..|| +.+.+.+|++.++||+++ +|.. .+.|. .+.+.+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~---~~~G~~~~~~~l 71 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT---DMNEILEAGVTATPGVAV--DGEL---VIMGKIPSKEEI 71 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEE---EEEeccCCHHHH
Confidence 3889999999999999999999999843 58888887 344478899999999998 5542 26674 344777
Q ss_pred HHHH
Q 020926 84 AEYV 87 (319)
Q Consensus 84 ~~~i 87 (319)
.+++
T Consensus 72 ~~~l 75 (76)
T TIGR00412 72 KEIL 75 (76)
T ss_pred HHHh
Confidence 7665
No 140
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.32 E-value=2.3e-12 Score=95.96 Aligned_cols=87 Identities=31% Similarity=0.525 Sum_probs=64.5
Q ss_pred cCCCcEEEEEECCCCccccchHHHHHHHHH---HhcCCCCeEEEEEeCccc--------------------hhhHhhcCC
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAA---AFTLEDDVVVANLDADKY--------------------KDLAEKYGV 174 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~~~~la~---~~~~~~~~~~~~vd~~~~--------------------~~l~~~~~v 174 (319)
.+++++++.|+++||++|+.+.+.+.+... .++ .++.++.++++.. .+++++|+|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK--DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH--CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh--cCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 467899999999999999999998886443 332 3567777776632 358899999
Q ss_pred ccccEEEEEeCCCcCeeecCCCCCHHHHHHHH
Q 020926 175 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 175 ~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i 206 (319)
+++||+++++++++.+..+.|..+.++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999999986666777899999999998875
No 141
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.32 E-value=9.2e-12 Score=117.66 Aligned_cols=99 Identities=27% Similarity=0.517 Sum_probs=79.7
Q ss_pred CccChHHHhh---cCCCcEEEEEECCCCccccchHHHH---HHHHHHhcCCCCeEEEEEeCcc----chhhHhhcCCccc
Q 020926 108 TADNFDEIVL---DKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGF 177 (319)
Q Consensus 108 ~~~~f~~~~~---~~~~~v~v~F~~~wC~~C~~~~~~~---~~la~~~~~~~~~~~~~vd~~~----~~~l~~~~~v~~~ 177 (319)
+.+++++.+. ..+++++|+||++||++|+.+.+.. .++.+.++ ++.++++|+++ +.+++++|++.++
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~ 535 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGL 535 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence 3455666552 3478999999999999999998864 56777763 58899999875 3578999999999
Q ss_pred cEEEEEeCCCcC--eeecCCCCCHHHHHHHHHHh
Q 020926 178 PTLKFFPKGNKD--GEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 178 Pti~~~~~g~~~--~~~~~g~~~~~~l~~~i~~~ 209 (319)
||+++|+++++. ..++.|..+.+++.+++++.
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 999999865554 46789999999999999864
No 142
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.32 E-value=3.6e-12 Score=95.30 Aligned_cols=84 Identities=13% Similarity=0.215 Sum_probs=57.4
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch-hhhhhcCCCc--CCeEEeccCCCCCCc---ccCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-SLCSKYGVQG--YPTIQWFPKGSLEPK---KYEG 76 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~--~Pt~~~~~~~~~~~~---~y~g 76 (319)
.++|.|||+||++|+.+.|.+.+.++..... ..|+.||.+.+. .....|++.+ +||+++|.+++.... ...|
T Consensus 21 pVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~--~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~ 98 (117)
T cd02959 21 PLMLLIHKTWCGACKALKPKFAESKEISELS--HNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIINKKG 98 (117)
T ss_pred cEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc--CcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhccCCC
Confidence 5899999999999999999999987765432 334445555443 4557899986 999999975443423 3335
Q ss_pred CCChHHHHHHHH
Q 020926 77 PRSTEALAEYVN 88 (319)
Q Consensus 77 ~~~~~~i~~~i~ 88 (319)
....+.+...+.
T Consensus 99 ~~~~~~f~~~~~ 110 (117)
T cd02959 99 NPNYKYFYSSAA 110 (117)
T ss_pred CccccccCCCHH
Confidence 555554444443
No 143
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.30 E-value=1.2e-11 Score=92.84 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=61.1
Q ss_pred cChHHHhhcCCCcEEEEEECCCCccccchHHH-H--HHHHHHhcCCCCeEEEEEeCccchhhHhh--------cCCcccc
Q 020926 110 DNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPT-Y--EKVAAAFTLEDDVVVANLDADKYKDLAEK--------YGVSGFP 178 (319)
Q Consensus 110 ~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~~vd~~~~~~l~~~--------~~v~~~P 178 (319)
+.+.... ..+++++|.|+++||++|+.+.+. | .+++..+. .+++++++|.++.+++++. |++.++|
T Consensus 6 eal~~Ak-~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~--~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 6 EAFEKAR-REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN--ENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred HHHHHHH-HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh--CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 3444444 778999999999999999999762 3 24555542 4799999999988777653 5899999
Q ss_pred EEEEEeCCCcCeee
Q 020926 179 TLKFFPKGNKDGEE 192 (319)
Q Consensus 179 ti~~~~~g~~~~~~ 192 (319)
+++++.++++.+..
T Consensus 83 t~vfl~~~G~~~~~ 96 (124)
T cd02955 83 LNVFLTPDLKPFFG 96 (124)
T ss_pred EEEEECCCCCEEee
Confidence 99999887765443
No 144
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.30 E-value=1.1e-11 Score=114.08 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=74.9
Q ss_pred cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEE----------------------------eCccchhhH
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL----------------------------DADKYKDLA 169 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~v----------------------------d~~~~~~l~ 169 (319)
+.+++++|+|||+||++|+.+.|.+.++++.+..+ ++.++.| +++.+..++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 57899999999999999999999999999988632 3444333 334556788
Q ss_pred hhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHH
Q 020926 170 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 207 (319)
Q Consensus 170 ~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~ 207 (319)
+.|+|.++||++++.++++....+.|..+.++|..+|.
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 99999999999888777778888999999999999998
No 145
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.29 E-value=2.4e-11 Score=104.07 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=71.6
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc-----------chhhHhhcCCccccEEEEEeC-C
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------YKDLAEKYGVSGFPTLKFFPK-G 186 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~-----------~~~l~~~~~v~~~Pti~~~~~-g 186 (319)
.+++++|.||++||++|+.+.|.+.++++.+. +.+..|+.+. +..++++|||.++||++++++ |
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDP 240 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCC
Confidence 47899999999999999999999999999983 4444444442 356889999999999999987 4
Q ss_pred CcCeeecCCCCCHHHHHHHHHHhhC
Q 020926 187 NKDGEEYGGGRDLEDFVSFINEKCG 211 (319)
Q Consensus 187 ~~~~~~~~g~~~~~~l~~~i~~~~~ 211 (319)
+.......|..+.++|.+.|...+.
T Consensus 241 ~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 241 NQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 4333446688999999999987653
No 146
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.27 E-value=1.1e-11 Score=83.13 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=51.3
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEe
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQW 63 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 63 (319)
-++.||++||++|+.+.+.+++++... +++.+..+|.+++++++++|++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~---~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN---PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC---CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 367899999999999999999998764 359999999999999999999999999865
No 147
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.26 E-value=2.3e-11 Score=93.78 Aligned_cols=70 Identities=19% Similarity=0.345 Sum_probs=56.1
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCC------CCeEEEEEeCccch-------------------------h
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE------DDVVVANLDADKYK-------------------------D 167 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~------~~~~~~~vd~~~~~-------------------------~ 167 (319)
.+++++|+|||+||++|+...|.+.++.+.++.+ .++.++.|+.+.+. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5789999999999999999999999988876532 25777777665321 4
Q ss_pred hHhhcCCccccEEEEEeCCCc
Q 020926 168 LAEKYGVSGFPTLKFFPKGNK 188 (319)
Q Consensus 168 l~~~~~v~~~Pti~~~~~g~~ 188 (319)
++++|++.++|+.+++..+|+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCc
Confidence 777889999999999987654
No 148
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.26 E-value=2.4e-11 Score=114.92 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=70.9
Q ss_pred ceEEEEEcCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEeccc----chhhhhhcCCCcCCeEEeccCCCCC--Ccc
Q 020926 3 LNAFCVKCDRCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDE----HKSLCSKYGVQGYPTIQWFPKGSLE--PKK 73 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~---~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~~~~~~~--~~~ 73 (319)
.++|+|||+||++|+.+.|.. .++.+.++ ++.++++|+++ +.+++++|+|.++||+++|++++.. ..+
T Consensus 476 ~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r 552 (571)
T PRK00293 476 PVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDAR 552 (571)
T ss_pred cEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCccccc
Confidence 479999999999999999875 56777664 48899999985 3688999999999999999855434 367
Q ss_pred cCCCCChHHHHHHHHhc
Q 020926 74 YEGPRSTEALAEYVNNE 90 (319)
Q Consensus 74 y~g~~~~~~i~~~i~~~ 90 (319)
+.|..+.+++.+++++.
T Consensus 553 ~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 553 VTGFMDAAAFAAHLRQL 569 (571)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 78999999999999864
No 149
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.25 E-value=1e-10 Score=94.16 Aligned_cols=104 Identities=20% Similarity=0.400 Sum_probs=82.8
Q ss_pred eEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc--------------------
Q 020926 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-------------------- 163 (319)
Q Consensus 104 v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~-------------------- 163 (319)
+..++++.+.... -.+++++|.||++||++|+...+.+.++++++... ++.++.++++
T Consensus 46 ~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~ 123 (173)
T PRK03147 46 LTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPVA 123 (173)
T ss_pred eecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceEE
Confidence 4455665554332 35788999999999999999999999999998643 4677777664
Q ss_pred --cchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHh
Q 020926 164 --KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 164 --~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 209 (319)
.+..+++.|++.++|+++++.++++....+.|..+.+++.+++.+.
T Consensus 124 ~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 124 IDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred ECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 2357789999999999999987777777889999999999998753
No 150
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.25 E-value=3e-11 Score=83.04 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=56.9
Q ss_pred EEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCC-CCHHHHH
Q 020926 125 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFV 203 (319)
Q Consensus 125 v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~-~~~~~l~ 203 (319)
|.||++||++|+.+.|.++++++++. ..+.+..+| +.+.+.+|++.++||+++ +| +.. +.|. .+.+.+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~--~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G-~~~--~~G~~~~~~~l~ 72 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELG--IDAEFEKVT---DMNEILEAGVTATPGVAV--DG-ELV--IMGKIPSKEEIK 72 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcC--CCeEEEEeC---CHHHHHHcCCCcCCEEEE--CC-EEE--EEeccCCHHHHH
Confidence 78999999999999999999999984 357787776 233477899999999999 55 322 6774 4557777
Q ss_pred HHH
Q 020926 204 SFI 206 (319)
Q Consensus 204 ~~i 206 (319)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 775
No 151
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.25 E-value=2.7e-11 Score=94.49 Aligned_cols=83 Identities=12% Similarity=0.197 Sum_probs=61.8
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc------------hhhh-hhc---CCCcCCeEEeccC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH------------KSLC-SKY---GVQGYPTIQWFPK 66 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~------------~~l~-~~~---~i~~~Pt~~~~~~ 66 (319)
+.+|+|||+||++|++..|.+.++++.+. +.+..|+.+.. .... ..| ++.++||.++++.
T Consensus 52 ~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 52 YALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 35899999999999999999999999872 44545554432 2233 345 7899999999987
Q ss_pred CCCC-CcccCCCCChHHHHHHHHh
Q 020926 67 GSLE-PKKYEGPRSTEALAEYVNN 89 (319)
Q Consensus 67 ~~~~-~~~y~g~~~~~~i~~~i~~ 89 (319)
.+.. ...+.|..+.+.+.+.+.+
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHH
Confidence 5433 3356799999998887764
No 152
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.25 E-value=1.9e-11 Score=104.69 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=68.3
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc-----------chhhhhhcCCCcCCeEEeccC-CCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-----------HKSLCSKYGVQGYPTIQWFPK-GSLE 70 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~-----------~~~l~~~~~i~~~Pt~~~~~~-~~~~ 70 (319)
+++|.||++||++|+.+.|.+.++++.+. +.+..|+.+. +..++++|||.++|+++++++ ++..
T Consensus 168 ~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 168 SGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred eEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 47999999999999999999999999873 4455555443 357889999999999999987 4433
Q ss_pred CcccCCCCChHHHHHHHHhcCC
Q 020926 71 PKKYEGPRSTEALAEYVNNEGG 92 (319)
Q Consensus 71 ~~~y~g~~~~~~i~~~i~~~~~ 92 (319)
.....|..+.+.|.+.+...+.
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHhc
Confidence 3344588999999998887654
No 153
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.25 E-value=1.6e-11 Score=91.42 Aligned_cols=85 Identities=26% Similarity=0.308 Sum_probs=59.9
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhc-CCceEEEEEecccc--------------------hhhhhhcCCCcCCeE
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKK-AKSVLIGKVDCDEH--------------------KSLCSKYGVQGYPTI 61 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~-~~~v~~~~vd~~~~--------------------~~l~~~~~i~~~Pt~ 61 (319)
.+++.|++|||++|+.+.+.+.+..+.... ...+.++.++++.. .++++.|+|+++||+
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~ 86 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTI 86 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEE
Confidence 378999999999999999998865442211 12577888887643 358899999999999
Q ss_pred EeccCCCCCCcccCCCCChHHHHHHH
Q 020926 62 QWFPKGSLEPKKYEGPRSTEALAEYV 87 (319)
Q Consensus 62 ~~~~~~~~~~~~y~g~~~~~~i~~~i 87 (319)
+++++.+.....+.|..+.++|.+++
T Consensus 87 ~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 87 VFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp EECTTTSCEEEEEESS--HHHHHHHH
T ss_pred EEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99986554556788999999998875
No 154
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.24 E-value=4.3e-11 Score=91.79 Aligned_cols=70 Identities=20% Similarity=0.449 Sum_probs=56.4
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCC-CCeEEEEEeCccc------------------------hhhHhhcC
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY------------------------KDLAEKYG 173 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~-~~~~~~~vd~~~~------------------------~~l~~~~~ 173 (319)
.+++++|.||++||++|+.+.|.+.++.++++.. .++.++.++.+.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 5789999999999999999999999999988643 3555555555422 35778999
Q ss_pred CccccEEEEEeCCCc
Q 020926 174 VSGFPTLKFFPKGNK 188 (319)
Q Consensus 174 v~~~Pti~~~~~g~~ 188 (319)
|.++|++++++++++
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 999999999986654
No 155
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.24 E-value=7.2e-11 Score=95.98 Aligned_cols=88 Identities=19% Similarity=0.298 Sum_probs=70.0
Q ss_pred cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch-----------------------hhHhhcCC
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----------------------DLAEKYGV 174 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~-----------------------~l~~~~~v 174 (319)
..+++++|.||++||++|+...|.+.++++. ++.++.|+.+++. .+...|++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 3688999999999999999999999988642 4556666543321 24557899
Q ss_pred ccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhh
Q 020926 175 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 210 (319)
Q Consensus 175 ~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 210 (319)
.++|+.+++.++++....+.|..+.+.+.++|....
T Consensus 141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 999999888877778888999999999988887654
No 156
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.23 E-value=2.9e-11 Score=111.29 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=71.2
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEE----------------------------ecccchhhhhhcC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKV----------------------------DCDEHKSLCSKYG 54 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~v----------------------------d~~~~~~l~~~~~ 54 (319)
.++|+|||+||++|+..+|.+.++++.++.. ++.++.| +++.+..+++.|+
T Consensus 58 pVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fg 136 (521)
T PRK14018 58 PTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLN 136 (521)
T ss_pred EEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHHcC
Confidence 4899999999999999999999999988642 3544443 3455667889999
Q ss_pred CCcCCeEEeccCCCCCCcccCCCCChHHHHHHHHhc
Q 020926 55 VQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 90 (319)
Q Consensus 55 i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~ 90 (319)
|.++||++++.+++.....+.|..+.+.|.++++..
T Consensus 137 V~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 137 ISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred CCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 999999988876655667888999999999999853
No 157
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=99.23 E-value=3.6e-10 Score=82.00 Aligned_cols=106 Identities=26% Similarity=0.481 Sum_probs=86.8
Q ss_pred ceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHH-HHhcCCCCeEEEEEeCc-----cchhhHhhcCCc-
Q 020926 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVA-AAFTLEDDVVVANLDAD-----KYKDLAEKYGVS- 175 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la-~~~~~~~~~~~~~vd~~-----~~~~l~~~~~v~- 175 (319)
....|+.-+|++++ ...+.++|.|...+ |..+-+..|.++| +.....+++.++.|.+. +|.+|+++|++.
T Consensus 5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 46789999999999 77899999998776 6678889999999 66666779999999986 678999999995
Q ss_pred -cccEEEEEeCCCcCeeec--CCCCCHHHHHHHHHHhhC
Q 020926 176 -GFPTLKFFPKGNKDGEEY--GGGRDLEDFVSFINEKCG 211 (319)
Q Consensus 176 -~~Pti~~~~~g~~~~~~~--~g~~~~~~l~~~i~~~~~ 211 (319)
.||.+++|..+...++.| .|..+.++|..|++++++
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 699999999777788988 899999999999998765
No 158
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.22 E-value=6.6e-11 Score=85.33 Aligned_cols=69 Identities=33% Similarity=0.672 Sum_probs=56.5
Q ss_pred CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch-------------------------hhHhhcCC
Q 020926 120 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------------------------DLAEKYGV 174 (319)
Q Consensus 120 ~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~-------------------------~l~~~~~v 174 (319)
+++++|+||++||++|+...|.+.++.+.+..++++.++.|..+... .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 57899999999999999999999999999975567888877776432 58888999
Q ss_pred ccccEEEEEeCCCc
Q 020926 175 SGFPTLKFFPKGNK 188 (319)
Q Consensus 175 ~~~Pti~~~~~g~~ 188 (319)
.++|+++++.++|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 99999999987753
No 159
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.22 E-value=9.3e-11 Score=88.82 Aligned_cols=93 Identities=28% Similarity=0.391 Sum_probs=70.8
Q ss_pred EcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeC---------------------cc
Q 020926 106 VLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA---------------------DK 164 (319)
Q Consensus 106 ~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~---------------------~~ 164 (319)
.++++.+.... ..+++++|.||++||++|+.+.|.+.++++.+ .+..+.+|- +.
T Consensus 7 ~~~g~~~~~~~-~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 7 TLDGEQFDLES-LSGKPVLVYFWATWCPVCRFTSPTVNQLAADY----PVVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred cCCCCEeeHHH-hCCCEEEEEEECCcChhhhhhChHHHHHHhhC----CEEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 34555555544 34689999999999999999999999998774 233232221 34
Q ss_pred chhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHH
Q 020926 165 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 204 (319)
Q Consensus 165 ~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~ 204 (319)
+..++++|+|.++|+++++.+++ ....+.|..+.++|.+
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 45799999999999999999887 7777889888888764
No 160
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.22 E-value=6.5e-11 Score=90.26 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=63.8
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEe-----------------------CccchhhHhhcCCc
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-----------------------ADKYKDLAEKYGVS 175 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd-----------------------~~~~~~l~~~~~v~ 175 (319)
.+++++|.||++||++|+...|.+.++++.+ ++.++.|+ ++.+..++..|++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 4789999999999999999999999998775 24444444 34455688899999
Q ss_pred cccEEEEEeCCCcCeeecCCCCCHHHH
Q 020926 176 GFPTLKFFPKGNKDGEEYGGGRDLEDF 202 (319)
Q Consensus 176 ~~Pti~~~~~g~~~~~~~~g~~~~~~l 202 (319)
++|+.+++.++++....+.|..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCChHhc
Confidence 999888887676777888898877654
No 161
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.21 E-value=3.8e-10 Score=84.69 Aligned_cols=105 Identities=13% Similarity=0.235 Sum_probs=85.3
Q ss_pred EcCccChHHHhhcCCCcEEEEEECC--CCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEE
Q 020926 106 VLTADNFDEIVLDKSKDVLVEFYAP--WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 183 (319)
Q Consensus 106 ~l~~~~f~~~~~~~~~~v~v~F~~~--wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~ 183 (319)
.++..+++.++ ......++.|... .++.+....-++.+++++|. ..++.+++||++.+++++.+|||.++||+++|
T Consensus 21 ~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~-~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 21 PVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP-DYTWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred ccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhc-CCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 46668888888 4444444444432 56677788889999999994 23599999999999999999999999999999
Q ss_pred eCCCcCeeecCCCCCHHHHHHHHHHhhCCC
Q 020926 184 PKGNKDGEEYGGGRDLEDFVSFINEKCGTS 213 (319)
Q Consensus 184 ~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 213 (319)
++| +......|..+.+++.+||.++++..
T Consensus 99 kdG-k~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 99 TGG-NYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred ECC-EEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 988 46677899999999999999987654
No 162
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.21 E-value=4.8e-11 Score=80.06 Aligned_cols=57 Identities=26% Similarity=0.539 Sum_probs=51.6
Q ss_pred EEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEE
Q 020926 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 123 v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~ 182 (319)
-++.|+++||++|+.+.+.+++++... +++.+..+|.+++++++++|++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~---~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN---PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC---CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 467899999999999999999998764 479999999999999999999999999865
No 163
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.20 E-value=6.3e-11 Score=90.96 Aligned_cols=70 Identities=23% Similarity=0.474 Sum_probs=56.1
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCC-CCeEEEEEeCccc-------------------------hhhHhhc
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY-------------------------KDLAEKY 172 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~-~~~~~~~vd~~~~-------------------------~~l~~~~ 172 (319)
.++.++|.||++||++|+...|.+.++++.++.+ .++.+..|+.+.. ..+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 5789999999999999999999999999988654 3566665555432 2466779
Q ss_pred CCccccEEEEEeCCCc
Q 020926 173 GVSGFPTLKFFPKGNK 188 (319)
Q Consensus 173 ~v~~~Pti~~~~~g~~ 188 (319)
+|.++|++++++++++
T Consensus 96 ~v~~iPt~~lid~~G~ 111 (132)
T cd02964 96 KVEGIPTLVVLKPDGD 111 (132)
T ss_pred CCCCCCEEEEECCCCC
Confidence 9999999999986654
No 164
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.19 E-value=1.1e-10 Score=94.09 Aligned_cols=86 Identities=26% Similarity=0.329 Sum_probs=73.2
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecc----------------------cchhhhhhcCCCcCCe
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD----------------------EHKSLCSKYGVQGYPT 60 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~----------------------~~~~l~~~~~i~~~Pt 60 (319)
.++|.||++||++|+...|.+.++++++.+. ++.++.|+++ .+..+++.|+|.++|+
T Consensus 63 ~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 141 (173)
T PRK03147 63 GVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPT 141 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCe
Confidence 3789999999999999999999999999753 4778888865 3457789999999999
Q ss_pred EEeccCCCCCCcccCCCCChHHHHHHHHh
Q 020926 61 IQWFPKGSLEPKKYEGPRSTEALAEYVNN 89 (319)
Q Consensus 61 ~~~~~~~~~~~~~y~g~~~~~~i~~~i~~ 89 (319)
++++++++.....+.|..+.+.+.++++.
T Consensus 142 ~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 142 TFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred EEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 99998777666678899999999999875
No 165
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.19 E-value=5.8e-11 Score=95.49 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=70.6
Q ss_pred cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeC-----------------------ccchhhHhhcCC
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-----------------------DKYKDLAEKYGV 174 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~-----------------------~~~~~l~~~~~v 174 (319)
..+++++|+||++||++|+.+.|.+.++++. ++.+..|+. |.+..+.+.|++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 3678999999999999999999999888753 234443332 333456778999
Q ss_pred ccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhhC
Q 020926 175 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 211 (319)
Q Consensus 175 ~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 211 (319)
.++|+.+++.++++....+.|..+.+++.++|+++++
T Consensus 136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 9999888887666777888999999999999988753
No 166
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.18 E-value=8.9e-11 Score=90.01 Aligned_cols=67 Identities=16% Similarity=0.342 Sum_probs=54.3
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEecccc------------------------hhhhhhcCCCc
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEH------------------------KSLCSKYGVQG 57 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~~i~~ 57 (319)
.++|+||++||++|+...|.+.++++.+.+. ..+.++.|+.+.+ ..+++.|+|.+
T Consensus 20 ~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 99 (131)
T cd03009 20 TVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEG 99 (131)
T ss_pred EEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCC
Confidence 4799999999999999999999999988754 2566666665532 35778999999
Q ss_pred CCeEEeccCCCC
Q 020926 58 YPTIQWFPKGSL 69 (319)
Q Consensus 58 ~Pt~~~~~~~~~ 69 (319)
+|+++++++++.
T Consensus 100 ~P~~~lid~~G~ 111 (131)
T cd03009 100 IPTLIILDADGE 111 (131)
T ss_pred CCEEEEECCCCC
Confidence 999999986653
No 167
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.18 E-value=9e-11 Score=90.52 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=54.5
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcC------CceEEEEEecccc-------------------------hhhhh
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKA------KSVLIGKVDCDEH-------------------------KSLCS 51 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~------~~v~~~~vd~~~~-------------------------~~l~~ 51 (319)
.++|+|||+||++|++.+|.+.++++.+.+. .++.++.|+.+++ ..+++
T Consensus 27 ~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~ 106 (146)
T cd03008 27 VLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEA 106 (146)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHH
Confidence 4899999999999999999999998877642 2478888876632 24777
Q ss_pred hcCCCcCCeEEeccCCCC
Q 020926 52 KYGVQGYPTIQWFPKGSL 69 (319)
Q Consensus 52 ~~~i~~~Pt~~~~~~~~~ 69 (319)
.|+|.++|+++++++.+.
T Consensus 107 ~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 107 QFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HcCCCCCCEEEEECCCCc
Confidence 899999999999987664
No 168
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.17 E-value=1.3e-10 Score=83.84 Aligned_cols=66 Identities=29% Similarity=0.434 Sum_probs=53.8
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc-------------------------hhhhhhcCCCc
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-------------------------KSLCSKYGVQG 57 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~~i~~ 57 (319)
+++|+|||+||++|+...|.+.++.+.+++.+++.++.|+++++ ..+.+.|+|.+
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~ 82 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGING 82 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TS
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCc
Confidence 47999999999999999999999999998435788888888753 25778889999
Q ss_pred CCeEEeccCCC
Q 020926 58 YPTIQWFPKGS 68 (319)
Q Consensus 58 ~Pt~~~~~~~~ 68 (319)
+|+++++++++
T Consensus 83 iP~~~lld~~G 93 (95)
T PF13905_consen 83 IPTLVLLDPDG 93 (95)
T ss_dssp SSEEEEEETTS
T ss_pred CCEEEEECCCC
Confidence 99999998765
No 169
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.16 E-value=7.9e-11 Score=89.76 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=60.3
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe-----------------------cccchhhhhhcCCCcCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVD-----------------------CDEHKSLCSKYGVQGYP 59 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~i~~~P 59 (319)
.++|+||++||++|+...|.+.++++.+ .+.++.|+ ++.+..+++.|++.++|
T Consensus 27 ~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 27 PYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred EEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 4799999999999999999999998775 25555555 34556788899999999
Q ss_pred eEEeccCCCCCCcccCCCCChHHH
Q 020926 60 TIQWFPKGSLEPKKYEGPRSTEAL 83 (319)
Q Consensus 60 t~~~~~~~~~~~~~y~g~~~~~~i 83 (319)
+.+++++++....++.|..+.+.|
T Consensus 103 ~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred eEEEECCCceEEEEEeccCChHhc
Confidence 877777665566778888876654
No 170
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.15 E-value=1.2e-10 Score=89.39 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=54.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcC-CceEEEEEecccc-------------------------hhhhhhcCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKA-KSVLIGKVDCDEH-------------------------KSLCSKYGVQ 56 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~-~~v~~~~vd~~~~-------------------------~~l~~~~~i~ 56 (319)
.++|.||++||++|+...|.+.++++.+.+. ..+.++.|+.+.+ ..+.+.|+|.
T Consensus 19 ~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~ 98 (132)
T cd02964 19 TVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVE 98 (132)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCC
Confidence 4799999999999999999999999988754 2577777766543 2456679999
Q ss_pred cCCeEEeccCCCC
Q 020926 57 GYPTIQWFPKGSL 69 (319)
Q Consensus 57 ~~Pt~~~~~~~~~ 69 (319)
++|++++++.++.
T Consensus 99 ~iPt~~lid~~G~ 111 (132)
T cd02964 99 GIPTLVVLKPDGD 111 (132)
T ss_pred CCCEEEEECCCCC
Confidence 9999999986653
No 171
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.14 E-value=2.3e-10 Score=85.03 Aligned_cols=76 Identities=34% Similarity=0.647 Sum_probs=65.5
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc-----------------------hhhHhhcCCc
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------------------KDLAEKYGVS 175 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~-----------------------~~l~~~~~v~ 175 (319)
.++++++.||++||++|+...+.+.++...+. ++++.++.|+++.. ..+.+.|++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR 96 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC
Confidence 47899999999999999999999999999986 45788999888875 6789999999
Q ss_pred cccEEEEEeCCCcCeeecCC
Q 020926 176 GFPTLKFFPKGNKDGEEYGG 195 (319)
Q Consensus 176 ~~Pti~~~~~g~~~~~~~~g 195 (319)
++|+++++.++++....+.|
T Consensus 97 ~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 97 GLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ccceEEEECCCCcEEEEecC
Confidence 99999999877666666654
No 172
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.14 E-value=3e-10 Score=80.32 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=63.1
Q ss_pred CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCH
Q 020926 120 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 199 (319)
Q Consensus 120 ~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~ 199 (319)
+...+..|+++||++|+...+.+.+++..+ +++.+..+|.++.++++++|+|.++||+++ +| + ..+.|..+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~---~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG-~--~~~~G~~~~ 83 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN---PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NG-E--LFGFGRMTL 83 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC---CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CC-E--EEEeCCCCH
Confidence 445688899999999999999999999876 579999999999999999999999999975 44 2 334676676
Q ss_pred HHHH
Q 020926 200 EDFV 203 (319)
Q Consensus 200 ~~l~ 203 (319)
++++
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 6654
No 173
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.14 E-value=1.6e-10 Score=86.74 Aligned_cols=66 Identities=18% Similarity=0.314 Sum_probs=52.6
Q ss_pred ceEEEEEcCCChhhhhhhHH-H--HHHHHHhhcCCceEEEEEecccchhhhhh--------cCCCcCCeEEeccCCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPE-Y--EKLGASFKKAKSVLIGKVDCDEHKSLCSK--------YGVQGYPTIQWFPKGSLE 70 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~-~--~~~a~~~~~~~~v~~~~vd~~~~~~l~~~--------~~i~~~Pt~~~~~~~~~~ 70 (319)
.++|+|||+||++|+.|.+. | .++++.+. ..+.++.||.++.+++++. |++.++|+++++.+.+..
T Consensus 17 pVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~--~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~ 93 (124)
T cd02955 17 PIFLSIGYSTCHWCHVMEHESFEDEEVAAILN--ENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKP 93 (124)
T ss_pred eEEEEEccCCCHhHHHHHHHccCCHHHHHHHh--CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCE
Confidence 58999999999999999873 3 35566553 2589999999988877653 589999999999887644
No 174
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.12 E-value=2.5e-10 Score=92.81 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=65.7
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc-----------------------hhhhhhcCCCcCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-----------------------KSLCSKYGVQGYP 59 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i~~~P 59 (319)
.++|+||++||++|++..|.+.++++. .+.++.|+.+++ ..++..|+|.++|
T Consensus 70 ~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 70 PVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 479999999999999999999988652 366777775432 1345578999999
Q ss_pred eEEeccCCCCCCcccCCCCChHHHHHHHHhcC
Q 020926 60 TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG 91 (319)
Q Consensus 60 t~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~~ 91 (319)
+.+++++.+.....+.|..+.+.+..+++...
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 88888766656678889999999888887643
No 175
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.12 E-value=3.1e-09 Score=100.29 Aligned_cols=177 Identities=13% Similarity=0.176 Sum_probs=131.0
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHHH
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE 85 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~ 85 (319)
+.++.+.|..|..+...+++++..- ++|.+...+.. ...|++.+..+|.....+|.|-..-.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~s---~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s 88 (517)
T PRK15317 23 LVASLDDSEKSAELKELLEEIASLS---DKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHEFTS 88 (517)
T ss_pred EEEEeCCCchHHHHHHHHHHHHHhC---CceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHHHHH
Confidence 4455568999999999999998863 34665442211 347999998876656689999888888888
Q ss_pred HHHhcCCCCccccCCCCceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc
Q 020926 86 YVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 165 (319)
Q Consensus 86 ~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~ 165 (319)
|+........ .-..|+.+..+.+-.-.+..-+..|.++.|++|......+.+++... +++.+-.+|...+
T Consensus 89 ~i~~i~~~~~-------~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~---~~i~~~~id~~~~ 158 (517)
T PRK15317 89 LVLALLQVGG-------HPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN---PNITHTMIDGALF 158 (517)
T ss_pred HHHHHHHhcC-------CCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC---CCceEEEEEchhC
Confidence 8877432111 11234444444443223444588999999999999999999998863 6899999999999
Q ss_pred hhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhhC
Q 020926 166 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 211 (319)
Q Consensus 166 ~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 211 (319)
++++++|++.++|++++ ++. ..+.|..+.++|.+.+.+..+
T Consensus 159 ~~~~~~~~v~~VP~~~i--~~~---~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 159 QDEVEARNIMAVPTVFL--NGE---EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred HhHHHhcCCcccCEEEE--CCc---EEEecCCCHHHHHHHHhcccc
Confidence 99999999999999965 332 457899999999999876544
No 176
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=7.4e-10 Score=111.67 Aligned_cols=92 Identities=21% Similarity=0.351 Sum_probs=76.7
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeC---------------------------ccchhhHhh
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA---------------------------DKYKDLAEK 171 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~---------------------------~~~~~l~~~ 171 (319)
.+++++|+|||+||++|+...|.+.+++++|+.. ++.++.|.. +.+..+.++
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 5799999999999999999999999999999643 577666631 123357789
Q ss_pred cCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhhC
Q 020926 172 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 211 (319)
Q Consensus 172 ~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 211 (319)
|+|.++|+++++.++++...++.|....+.+.++|...+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 9999999999997666777789999999999999988764
No 177
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.10 E-value=2.9e-10 Score=91.48 Aligned_cols=84 Identities=21% Similarity=0.225 Sum_probs=65.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEec-----------------------ccchhhhhhcCCCcCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC-----------------------DEHKSLCSKYGVQGYP 59 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i~~~P 59 (319)
.++|+||++||++|+++.|.+.++++. ++.++.|+. +.+..+.+.|++.++|
T Consensus 65 ~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 65 PVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 489999999999999999999988753 244555543 3344667789999999
Q ss_pred eEEeccCCCCCCcccCCCCChHHHHHHHHhcC
Q 020926 60 TIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG 91 (319)
Q Consensus 60 t~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~~ 91 (319)
+.+++++++.....+.|..+.+.+.+++.+..
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 87787665555577789999999999988653
No 178
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.10 E-value=2.7e-10 Score=86.28 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=62.2
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe---------------------cccchhhhhhcCCCcCCeE
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVD---------------------CDEHKSLCSKYGVQGYPTI 61 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd---------------------~~~~~~l~~~~~i~~~Pt~ 61 (319)
.++|.||++||++|+.+.|.+.++++.+. +..+.+| ++.+..+++.|+|.++|++
T Consensus 22 ~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 22 PVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred EEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 47899999999999999999999987742 2222222 2345679999999999999
Q ss_pred EeccCCCCCCcccCCCCChHHHHH
Q 020926 62 QWFPKGSLEPKKYEGPRSTEALAE 85 (319)
Q Consensus 62 ~~~~~~~~~~~~y~g~~~~~~i~~ 85 (319)
+++++++ ....+.|..+.+.|.+
T Consensus 98 ~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 98 VIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred EEEcCCC-eEEEEeccCCHHHHHh
Confidence 9999887 6677889888888864
No 179
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.09 E-value=3.3e-10 Score=80.13 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=59.8
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHH
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 83 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i 83 (319)
.+..|+++||++|....+.+.+++..+. ++.+..+|.++.++++.+|+|.++|++++ +|. ..+.|..+.+.+
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~---~~~~G~~~~~e~ 86 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE---LFGFGRMTLEEI 86 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE---EEEeCCCCHHHH
Confidence 4678999999999999999999998763 49999999999999999999999999965 554 344575555554
No 180
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.08 E-value=3.5e-10 Score=84.05 Aligned_cols=73 Identities=25% Similarity=0.416 Sum_probs=61.8
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc-----------------------hhhhhhcCCCcCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-----------------------KSLCSKYGVQGYP 59 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i~~~P 59 (319)
.++|.||++||++|+...+.+.++.+.+.. ..+.++.|+++.+ ..+++.|++.++|
T Consensus 21 ~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 99 (116)
T cd02966 21 VVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLP 99 (116)
T ss_pred EEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccc
Confidence 478999999999999999999999999863 4699999999875 7889999999999
Q ss_pred eEEeccCCCCCCcccCC
Q 020926 60 TIQWFPKGSLEPKKYEG 76 (319)
Q Consensus 60 t~~~~~~~~~~~~~y~g 76 (319)
+++++++++.....+.|
T Consensus 100 ~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 100 TTFLIDRDGRIRARHVG 116 (116)
T ss_pred eEEEECCCCcEEEEecC
Confidence 99999876655455443
No 181
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.06 E-value=2.1e-08 Score=85.65 Aligned_cols=186 Identities=19% Similarity=0.223 Sum_probs=120.6
Q ss_pred eEEEEEcCCChhhhhhh------HHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCC
Q 020926 4 NAFCVKCDRCGHCKKLA------PEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP 77 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~------p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~ 77 (319)
.+|+||.|--.+ +... ..+-+++.+.-....|.|+.||..++..+++++|+...+++.+|+.|. .+.|.|.
T Consensus 54 l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~--~IEydG~ 130 (383)
T PF01216_consen 54 LVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGE--VIEYDGE 130 (383)
T ss_dssp EEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--STTEEEEEETTE--EEEE-S-
T ss_pred EEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccccCcEEEEECCc--EEEecCc
Confidence 567788776332 2221 223344443333357999999999999999999999999999999995 4899999
Q ss_pred CChHHHHHHHHhcCCCCccccCCCCceEEcCccChHH-HhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeE
Q 020926 78 RSTEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDE-IVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 156 (319)
Q Consensus 78 ~~~~~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~-~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~ 156 (319)
++++.++.|+..... ..|..++.+.=.+ +-.-.....+|.|+.+--+ .-...|+++|..|+ +-+.
T Consensus 131 ~saDtLVeFl~dl~e---------dPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s---~~yk~FeeAAe~F~--p~Ik 196 (383)
T PF01216_consen 131 RSADTLVEFLLDLLE---------DPVEIINNKHELKAFERIEDDIKLIGYFKSEDS---EHYKEFEEAAEHFQ--PYIK 196 (383)
T ss_dssp -SHHHHHHHHHHHHS---------SSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTS---HHHHHHHHHHHHCT--TTSE
T ss_pred cCHHHHHHHHHHhcc---------cchhhhcChhhhhhhhhcccceeEEEEeCCCCc---HHHHHHHHHHHhhc--Ccee
Confidence 999999999998754 2355565533222 2212346788888877322 24567889999996 5677
Q ss_pred EEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCC-CCHHHHHHHHHHhh
Q 020926 157 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFVSFINEKC 210 (319)
Q Consensus 157 ~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~-~~~~~l~~~i~~~~ 210 (319)
|.. +-++.+++++++. .=.+-+|.+-...++...|. .+.+++.+||.++.
T Consensus 197 FfA---tfd~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~ 247 (383)
T PF01216_consen 197 FFA---TFDKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHK 247 (383)
T ss_dssp EEE---E-SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-
T ss_pred EEE---EecchhhhhcCcc-ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhc
Confidence 766 4568899999996 77788888776677777665 57889999999875
No 182
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.06 E-value=1.3e-09 Score=86.69 Aligned_cols=85 Identities=15% Similarity=0.244 Sum_probs=67.1
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc-------------hhhHhhcCC--ccccEEEEEeCCCc
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------------KDLAEKYGV--SGFPTLKFFPKGNK 188 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~-------------~~l~~~~~v--~~~Pti~~~~~g~~ 188 (319)
+|.||++||++|++..|.+.++++++. +.+..|+.+.. ..+...|++ .++|+.++++.+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 778999999999999999999999983 44444444421 236678885 69999999988876
Q ss_pred Ce-eecCCCCCHHHHHHHHHHhhCC
Q 020926 189 DG-EEYGGGRDLEDFVSFINEKCGT 212 (319)
Q Consensus 189 ~~-~~~~g~~~~~~l~~~i~~~~~~ 212 (319)
.. ..+.|..+.+++.+.|.+....
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhh
Confidence 54 4689999999999988877644
No 183
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.05 E-value=2.5e-09 Score=79.81 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=74.7
Q ss_pred cCCCcEEEEEECCCCccccchHH-HH--HHHHHHhcCCCCeEEEEEeCc--cchhhHhhcCCccccEEEEEeC-CCcCee
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAP-TY--EKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPK-GNKDGE 191 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~-~~--~~la~~~~~~~~~~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~-g~~~~~ 191 (319)
..+++++|+|+++||++|+.+.. .| .++.+.+. .++++..+|.+ +...++..|++.++|+++++.+ +++...
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~--~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~ 92 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR--ENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLK 92 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH--hCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeE
Confidence 56899999999999999999865 34 33444443 36888888877 5668999999999999999987 667788
Q ss_pred ecCCCCCHHHHHHHHHHhh
Q 020926 192 EYGGGRDLEDFVSFINEKC 210 (319)
Q Consensus 192 ~~~g~~~~~~l~~~i~~~~ 210 (319)
+..|..+++++...|++..
T Consensus 93 ~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 93 VWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EEcCCCCHHHHHHHHHHHH
Confidence 8999999999999988754
No 184
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.02 E-value=1.3e-10 Score=93.62 Aligned_cols=103 Identities=30% Similarity=0.586 Sum_probs=92.7
Q ss_pred CceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEE
Q 020926 102 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 181 (319)
Q Consensus 102 ~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~ 181 (319)
+.+..++.+|+...+ ...+++.|++|||+.|+.+.|.|+..|.--.+ -.+.++.||.+.++.|.-+|-|...|||+
T Consensus 24 s~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 24 SKLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred ceeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecceEE
Confidence 468889999999988 67799999999999999999999999876543 47999999999999999999999999999
Q ss_pred EEeCCCcCeeecCCCCCHHHHHHHHHHhh
Q 020926 182 FFPKGNKDGEEYGGGRDLEDFVSFINEKC 210 (319)
Q Consensus 182 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 210 (319)
-..+| ...+|.|.++..++++|+...-
T Consensus 100 HvkDG--eFrrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 100 HVKDG--EFRRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred Eeecc--ccccccCcccchhHHHHHHhhh
Confidence 99888 6788999999999999997654
No 185
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.02 E-value=1.4e-09 Score=86.50 Aligned_cols=83 Identities=12% Similarity=0.195 Sum_probs=64.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc-------------hhhhhhcCC--CcCCeEEeccCCCC
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-------------KSLCSKYGV--QGYPTIQWFPKGSL 69 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~i--~~~Pt~~~~~~~~~ 69 (319)
+|.||++||++|++..|.+.++++++. +.+..|+.+.. ..+...|++ .++|+.++++..+.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 678999999999999999999999972 55555655422 235678885 69999999987775
Q ss_pred CC-cccCCCCChHHHHHHHHhcC
Q 020926 70 EP-KKYEGPRSTEALAEYVNNEG 91 (319)
Q Consensus 70 ~~-~~y~g~~~~~~i~~~i~~~~ 91 (319)
.. ..+.|..+.+.+.+.+....
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHH
Confidence 43 35789999999988887654
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.99 E-value=2.7e-08 Score=93.85 Aligned_cols=177 Identities=14% Similarity=0.224 Sum_probs=129.4
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHHH
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAE 85 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~ 85 (319)
+.++.+.|..|..+...++++++.- ++|.+...+... ...|++.++.+|.....+|.|-..-.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~s---~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s 89 (515)
T TIGR03140 23 LVLSAGSHEKSKELLELLDEIASLS---DKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHEFTS 89 (515)
T ss_pred EEEEeCCCchhHHHHHHHHHHHHhC---CCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHHHHH
Confidence 3444447999999999999888763 356664433221 356999998776656689999888888888
Q ss_pred HHHhcCCCCccccCCCCceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc
Q 020926 86 YVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 165 (319)
Q Consensus 86 ~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~ 165 (319)
|+........ .-..++.+..+.+-.-.+...+-.|.++.|++|......+.+++... +++..-.+|...+
T Consensus 90 ~i~~i~~~~~-------~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~---p~i~~~~id~~~~ 159 (515)
T TIGR03140 90 LVLAILQVGG-------HGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN---PNISHTMIDGALF 159 (515)
T ss_pred HHHHHHHhcC-------CCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC---CCceEEEEEchhC
Confidence 8877432211 11235555544443223455688999999999999988998888874 5888888999999
Q ss_pred hhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhh
Q 020926 166 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 210 (319)
Q Consensus 166 ~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 210 (319)
++++++|++.++|++++ ++. ..+.|..+.+++.+.+.+..
T Consensus 160 ~~~~~~~~v~~VP~~~i--~~~---~~~~g~~~~~~~~~~l~~~~ 199 (515)
T TIGR03140 160 QDEVEALGIQGVPAVFL--NGE---EFHNGRMDLAELLEKLEETA 199 (515)
T ss_pred HHHHHhcCCcccCEEEE--CCc---EEEecCCCHHHHHHHHhhcc
Confidence 99999999999999976 332 45789999999988887653
No 187
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.98 E-value=3e-09 Score=80.90 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=60.9
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc---------------------------cchhhHhh
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------------KYKDLAEK 171 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~---------------------------~~~~l~~~ 171 (319)
.+++++|.||++||++|....|.+.++.++++. .++.++.|+.+ ....+.+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 568999999999999999999999999999975 35766666431 11246777
Q ss_pred cCCccccEEEEEeCCCcCeeecCCC
Q 020926 172 YGVSGFPTLKFFPKGNKDGEEYGGG 196 (319)
Q Consensus 172 ~~v~~~Pti~~~~~g~~~~~~~~g~ 196 (319)
|++.++|+.++++++++....+.|.
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEecC
Confidence 8999999999998777766666663
No 188
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.98 E-value=1.4e-09 Score=109.66 Aligned_cols=87 Identities=18% Similarity=0.272 Sum_probs=71.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEec---------------------------ccchhhhhhcCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC---------------------------DEHKSLCSKYGV 55 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~~~i 55 (319)
+++|+|||+||++|+...|.++++++.+++. .+.++.|.+ +.+..+.++|+|
T Consensus 422 ~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V 500 (1057)
T PLN02919 422 VVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELGV 500 (1057)
T ss_pred EEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcCC
Confidence 5899999999999999999999999999753 477776642 223457789999
Q ss_pred CcCCeEEeccCCCCCCcccCCCCChHHHHHHHHhc
Q 020926 56 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 90 (319)
Q Consensus 56 ~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~ 90 (319)
.++|+++++++.+....++.|....+.+.++++..
T Consensus 501 ~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 501 SSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 99999999976555667788999999998888873
No 189
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.97 E-value=1.6e-10 Score=93.00 Aligned_cols=85 Identities=21% Similarity=0.417 Sum_probs=76.5
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHH
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 83 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i 83 (319)
+|++|+||||+.|+.+.|+|+..+.--.+ -.|.++.||.+.++.|.-+|-+...|||.-.+.|.. .+|.|.|+..++
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGeF--rrysgaRdk~df 118 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGEF--RRYSGARDKNDF 118 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecceEEEeecccc--ccccCcccchhH
Confidence 46899999999999999999999987654 369999999999999999999999999998888863 799999999999
Q ss_pred HHHHHhcC
Q 020926 84 AEYVNNEG 91 (319)
Q Consensus 84 ~~~i~~~~ 91 (319)
+.|+....
T Consensus 119 isf~~~r~ 126 (248)
T KOG0913|consen 119 ISFEEHRE 126 (248)
T ss_pred HHHHHhhh
Confidence 99998753
No 190
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.94 E-value=3.1e-09 Score=79.26 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEE
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 160 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~v 160 (319)
.+++++|.||++||++|+...|.+.++++.+.. ++.++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence 378999999999999999999999999888753 3444433
No 191
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.93 E-value=3.2e-09 Score=80.77 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=56.3
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecc---------------------------cchhhhhhcCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---------------------------EHKSLCSKYGV 55 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~---------------------------~~~~l~~~~~i 55 (319)
.++|.||++||++|++..|.+.++.+.+++ .++.++.|+.. .+..+.+.|++
T Consensus 25 ~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v 103 (126)
T cd03012 25 VVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYGN 103 (126)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhCC
Confidence 479999999999999999999999999975 35777777541 12346677899
Q ss_pred CcCCeEEeccCCCCCCcccCC
Q 020926 56 QGYPTIQWFPKGSLEPKKYEG 76 (319)
Q Consensus 56 ~~~Pt~~~~~~~~~~~~~y~g 76 (319)
.++|+.+++++++.....+.|
T Consensus 104 ~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 104 QYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CcCCeEEEECCCCcEEEEEec
Confidence 999999999766544444444
No 192
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.91 E-value=2.6e-09 Score=97.76 Aligned_cols=98 Identities=27% Similarity=0.460 Sum_probs=77.6
Q ss_pred ChHHHhhc-CCCcEEEEEECCCCccccchHHHHH-HHHHHhcCCCCeEEEEEeCccc----hhhHhhcCCccccEEEEEe
Q 020926 111 NFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYE-KVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFP 184 (319)
Q Consensus 111 ~f~~~~~~-~~~~v~v~F~~~wC~~C~~~~~~~~-~la~~~~~~~~~~~~~vd~~~~----~~l~~~~~v~~~Pti~~~~ 184 (319)
..++.+.+ .+++|+++|||+||-.|+.+.+..- .....++ -.+++..+.|.+.+ .++.++||+-+.|++++|+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 55665522 2359999999999999999988543 3333333 24799999999854 3688899999999999999
Q ss_pred CCCcCeeecCCCCCHHHHHHHHHHh
Q 020926 185 KGNKDGEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 185 ~g~~~~~~~~g~~~~~~l~~~i~~~ 209 (319)
.+++++....|..+.+.+.+++++.
T Consensus 543 ~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCcCcCCcceecHHHHHHHHHHh
Confidence 7777777799999999999999864
No 193
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.91 E-value=7.3e-09 Score=77.28 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=69.7
Q ss_pred ceEEEEEcCCChhhhhhhH-HH--HHHHHHhhcCCceEEEEEecc--cchhhhhhcCCCcCCeEEeccC-CCCCCcccCC
Q 020926 3 LNAFCVKCDRCGHCKKLAP-EY--EKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPK-GSLEPKKYEG 76 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p-~~--~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~-~~~~~~~y~g 76 (319)
+++|+|+++||++|+.+.. .| .++.+.++. ...+..+|.+ +...++..|++.++|++.++.+ ++....+..|
T Consensus 19 ~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G 96 (114)
T cd02958 19 WLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSG 96 (114)
T ss_pred eEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcC
Confidence 5899999999999999976 44 445555543 4778888886 5678999999999999999987 5656678889
Q ss_pred CCChHHHHHHHHhc
Q 020926 77 PRSTEALAEYVNNE 90 (319)
Q Consensus 77 ~~~~~~i~~~i~~~ 90 (319)
..+++.+...+.+.
T Consensus 97 ~~~~~~f~~~L~~~ 110 (114)
T cd02958 97 NITPEDLLSQLIEF 110 (114)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999888764
No 194
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.91 E-value=6.2e-09 Score=78.16 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=52.7
Q ss_pred hcCCCcEEEEEECCCCccccchHHHH---HHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeec
Q 020926 117 LDKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEY 193 (319)
Q Consensus 117 ~~~~~~v~v~F~~~wC~~C~~~~~~~---~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~ 193 (319)
...+++++|+|+++||++|+.+...+ .++.+... .+++.+.++.+..+.-....+ .++||++|++++++.+.+.
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~--~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ--EDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH--hCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcccc
Confidence 36789999999999999999997753 22333332 357777777653221111233 5799999998887777666
Q ss_pred CCC
Q 020926 194 GGG 196 (319)
Q Consensus 194 ~g~ 196 (319)
.|.
T Consensus 97 ~Gy 99 (130)
T cd02960 97 TGR 99 (130)
T ss_pred ccc
Confidence 664
No 195
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.90 E-value=8e-09 Score=80.68 Aligned_cols=90 Identities=27% Similarity=0.399 Sum_probs=67.1
Q ss_pred cCccChHHHhhcCCCcEEEEEECC-CCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc--------------------
Q 020926 107 LTADNFDEIVLDKSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------------------- 165 (319)
Q Consensus 107 l~~~~f~~~~~~~~~~v~v~F~~~-wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~-------------------- 165 (319)
.++..+.-.- -.+++++|.||++ ||++|+...|.+.++++.++.. ++.++.|..+.+
T Consensus 16 ~~g~~~~l~~-~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~ 93 (146)
T PF08534_consen 16 LDGKPVSLSD-FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDP 93 (146)
T ss_dssp TTSEEEEGGG-GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEET
T ss_pred CCCCEecHHH-hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEech
Confidence 4444443322 3688999999999 9999999999999999887644 455544443322
Q ss_pred -hhhHhhcCCc---------cccEEEEEeCCCcCeeecCCCCC
Q 020926 166 -KDLAEKYGVS---------GFPTLKFFPKGNKDGEEYGGGRD 198 (319)
Q Consensus 166 -~~l~~~~~v~---------~~Pti~~~~~g~~~~~~~~g~~~ 198 (319)
..+.+.|++. ++|+++++.++++......|..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 94 DGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp TSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 2688899988 99999999988877777766544
No 196
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.88 E-value=3.8e-09 Score=96.69 Aligned_cols=87 Identities=21% Similarity=0.283 Sum_probs=71.6
Q ss_pred ceEEEEEcCCChhhhhhhHHH-HHHHHHhhcCCceEEEEEecccc----hhhhhhcCCCcCCeEEeccCCCCCCcccCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEY-EKLGASFKKAKSVLIGKVDCDEH----KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP 77 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~-~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~ 77 (319)
.|+|+|||+||-.||.+++.. .+.....+ ..++++.++|.+++ .++.++||+-+.|++++|++++..+....|.
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf 554 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGF 554 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcce
Confidence 489999999999999999954 33333332 24699999999865 6788999999999999999777666668899
Q ss_pred CChHHHHHHHHhc
Q 020926 78 RSTEALAEYVNNE 90 (319)
Q Consensus 78 ~~~~~i~~~i~~~ 90 (319)
.+.+.+.+++++.
T Consensus 555 ~~a~~~~~~l~~~ 567 (569)
T COG4232 555 LTADAFLEHLERA 567 (569)
T ss_pred ecHHHHHHHHHHh
Confidence 9999999999864
No 197
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.87 E-value=1.3e-08 Score=83.57 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=37.8
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeC
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 162 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~ 162 (319)
.+++++|.||++||++|+...|.+.++.++++.+ ++.++.|++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecc
Confidence 4789999999999999999999999999999754 577777765
No 198
>smart00594 UAS UAS domain.
Probab=98.84 E-value=2.6e-08 Score=75.16 Aligned_cols=87 Identities=11% Similarity=0.199 Sum_probs=67.4
Q ss_pred cCCCcEEEEEECCCCccccchHHH-H--HHHHHHhcCCCCeEEEEEeCc--cchhhHhhcCCccccEEEEEeCCC-----
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPT-Y--EKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGN----- 187 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~g~----- 187 (319)
..+|.++|+|+++||++|+.+... | .++.+.+. .++++..+|.+ +...++.+|+++++|+++++.+.+
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~--~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~ 102 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR--ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVI 102 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH--cCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeE
Confidence 567899999999999999998653 3 23333442 36888788866 556799999999999999997554
Q ss_pred cCeeecCCCCCHHHHHHHH
Q 020926 188 KDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 188 ~~~~~~~g~~~~~~l~~~i 206 (319)
....+..|..++++|..++
T Consensus 103 ~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 103 EWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEeccccCCCCHHHHHHhh
Confidence 2355688999999998876
No 199
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.84 E-value=1.6e-08 Score=80.96 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=64.0
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHH-hcCCCCeEEEEEeCc-----------------------------cchhh
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVANLDAD-----------------------------KYKDL 168 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~-~~~~~~~~~~~vd~~-----------------------------~~~~l 168 (319)
.+++.+|.|||+||++|+..+|.+.+++.+ +..+.--....||.+ .+..+
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 489999999999999999999999999753 211000000222322 22346
Q ss_pred HhhcCCccccEE-EEEeCCCcCeeecCCCCCHHHHHHHH
Q 020926 169 AEKYGVSGFPTL-KFFPKGNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 169 ~~~~~v~~~Pti-~~~~~g~~~~~~~~g~~~~~~l~~~i 206 (319)
...|++.++|+. +++++.|+....+.|..+.+++.+.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 678999999887 78888888888899999888876644
No 200
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.84 E-value=5.2e-09 Score=78.04 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=41.8
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEE---ecccchhhhhhcCCCcCCeE
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKV---DCDEHKSLCSKYGVQGYPTI 61 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~v---d~~~~~~l~~~~~i~~~Pt~ 61 (319)
.++|.||++||++|+...|.+.++++.+.+ .+.++.+ +.++...+++++++..+|++
T Consensus 23 ~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 23 PTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred eEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 478999999999999999999999888743 3555544 22233456677777667764
No 201
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.84 E-value=3.2e-08 Score=82.69 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=68.6
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc--------cc---hhhH-hhcCC------------
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--------KY---KDLA-EKYGV------------ 174 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~--------~~---~~l~-~~~~v------------ 174 (319)
.+++++|.||++||++|....|.+.++.+.++.+ ++.++.|+++ .. ..++ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 4689999999999999999999999999999754 5777777753 11 1222 22221
Q ss_pred ----------------------ccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhh
Q 020926 175 ----------------------SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 210 (319)
Q Consensus 175 ----------------------~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 210 (319)
...|+.++++++|+.+..|.|..+.+++.+.|++.+
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 224788888877788888888888888888887765
No 202
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.83 E-value=9.5e-09 Score=77.21 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=69.8
Q ss_pred CChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHHHHHHhcC
Q 020926 12 RCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEG 91 (319)
Q Consensus 12 ~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~~ 91 (319)
-++.+-...-.+.+++++|.+ .++.+++||.++++.++.+|||.++||+++|++|+. .....|..+.+.+.+++....
T Consensus 47 r~~E~~D~avvleELa~e~~~-~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~-v~~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 47 RTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNY-RGVLNGIHPWAELINLMRGLV 124 (132)
T ss_pred cCCccccHHHHHHHHHHHhcC-CceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEE-EEEEeCcCCHHHHHHHHHHHh
Confidence 456677888899999999953 359999999999999999999999999999999984 477889999999999999876
Q ss_pred CC
Q 020926 92 GT 93 (319)
Q Consensus 92 ~~ 93 (319)
..
T Consensus 125 ~~ 126 (132)
T PRK11509 125 EP 126 (132)
T ss_pred cC
Confidence 53
No 203
>smart00594 UAS UAS domain.
Probab=98.80 E-value=2.4e-08 Score=75.33 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=65.0
Q ss_pred ceEEEEEcCCChhhhhhhHH-H--HHHHHHhhcCCceEEEEEecc--cchhhhhhcCCCcCCeEEeccCCC-----CCCc
Q 020926 3 LNAFCVKCDRCGHCKKLAPE-Y--EKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFPKGS-----LEPK 72 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~-~--~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~~~-----~~~~ 72 (319)
+++|+|+++||+.|+.+... | .++.+.++. .+.+..+|.+ +...++.+|+++++|++.++.+.+ ....
T Consensus 29 ~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~ 106 (122)
T smart00594 29 LLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVG 106 (122)
T ss_pred CEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEec
Confidence 57999999999999998875 3 444555532 5888778875 557899999999999999997654 1245
Q ss_pred ccCCCCChHHHHHHH
Q 020926 73 KYEGPRSTEALAEYV 87 (319)
Q Consensus 73 ~y~g~~~~~~i~~~i 87 (319)
+..|..+++++..++
T Consensus 107 ~~~G~~~~~~l~~~l 121 (122)
T smart00594 107 VVEGEISPEELMTFL 121 (122)
T ss_pred cccCCCCHHHHHHhh
Confidence 778999999998876
No 204
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.77 E-value=1e-08 Score=71.56 Aligned_cols=65 Identities=32% Similarity=0.628 Sum_probs=49.0
Q ss_pred cCCCcEEEEEECCCCccccchHHHH---HHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeC
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK 185 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~~---~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~ 185 (319)
..+++++|.|+++||++|+.+...+ .++...+. .+++.+.+|.+...... ++...++|+++++.+
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~--~~fv~v~vd~~~~~~~~-~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN--KNFVLVKVDVDDEDPNA-QFDRQGYPTFFFLDP 82 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH--HCSEEEEEETTTHHHHH-HHHHCSSSEEEEEET
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH--CCEEEEEEEcCCCChhH-HhCCccCCEEEEeCC
Confidence 6789999999999999999998765 34444343 47999999998665433 222267999999863
No 205
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.77 E-value=7.1e-08 Score=78.62 Aligned_cols=86 Identities=22% Similarity=0.301 Sum_probs=60.7
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeC------------------ccchhhHhhcCCccccEE
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA------------------DKYKDLAEKYGVSGFPTL 180 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~------------------~~~~~l~~~~~v~~~Pti 180 (319)
.+++++|.||++||++|+...|.+.++.+... .++.++..|. ....++.+.|++.++|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 57899999999999999999999999877642 2455444220 013467788999999999
Q ss_pred EEEeCCCcCeeecCCC-CCHHHHHHHHHH
Q 020926 181 KFFPKGNKDGEEYGGG-RDLEDFVSFINE 208 (319)
Q Consensus 181 ~~~~~g~~~~~~~~g~-~~~~~l~~~i~~ 208 (319)
++++++++.. +.|. .+.+.+.++++.
T Consensus 151 ~lID~~G~I~--~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 151 VLLDQDGKIR--AKGLTNTREHLESLLEA 177 (189)
T ss_pred EEECCCCeEE--EccCCCCHHHHHHHHHH
Confidence 9887665433 3443 455666666654
No 206
>PLN02412 probable glutathione peroxidase
Probab=98.76 E-value=4.5e-08 Score=78.15 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=63.6
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc--------cchhh----HhhcCC------------
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--------KYKDL----AEKYGV------------ 174 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~--------~~~~l----~~~~~v------------ 174 (319)
.+++++|.||++||++|+...|.+.++.+.|+.. ++.++.|.++ ...++ ++++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 4689999999999999999999999999999754 5777777653 11111 233332
Q ss_pred ----------------------ccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhh
Q 020926 175 ----------------------SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 210 (319)
Q Consensus 175 ----------------------~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 210 (319)
...|+.+++.++++....+.|..+.+++...|+..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 224566666666666666677777777777776554
No 207
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.76 E-value=2.1e-08 Score=69.99 Aligned_cols=61 Identities=28% Similarity=0.481 Sum_probs=46.0
Q ss_pred ceEEEEEcCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPK 66 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~---~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 66 (319)
.+||+|+++||++|+.+...+ .++.+.+. +++.++.||.++...... +...++|+++++++
T Consensus 19 pvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~--~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 19 PVLVDFGADWCPPCKKLEREVFSDPEVQEALN--KNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLDP 82 (82)
T ss_dssp EEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH--HCSEEEEEETTTHHHHHH-HHHCSSSEEEEEET
T ss_pred CEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH--CCEEEEEEEcCCCChhHH-hCCccCCEEEEeCC
Confidence 479999999999999999877 44555343 359999999987655432 22267999999864
No 208
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.75 E-value=3.5e-08 Score=74.10 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=46.3
Q ss_pred ceEEEEEcCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEecccc-hhhhhhcCCCcCCeEEeccCCCCCCcccCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDCDEH-KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGP 77 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~---~~~a~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~ 77 (319)
.+||.||++||++|+.+.... .++.+..+ ..+.++.++.+.. ..+ ...+ .++||++|+++.+....+..|.
T Consensus 25 pvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~--~~Fv~V~l~~d~td~~~-~~~g-~~vPtivFld~~g~vi~~i~Gy 99 (130)
T cd02960 25 PLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ--EDFIMLNLVHETTDKNL-SPDG-QYVPRIMFVDPSLTVRADITGR 99 (130)
T ss_pred eEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH--hCeEEEEEEeccCCCCc-CccC-cccCeEEEECCCCCCccccccc
Confidence 478999999999999999864 33344332 2366666766422 122 1234 6899999998876555555443
No 209
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.74 E-value=3.7e-08 Score=76.86 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=58.9
Q ss_pred eEEEEEcC-CChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc---------------------chhhhhhcCCC-----
Q 020926 4 NAFCVKCD-RCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------HKSLCSKYGVQ----- 56 (319)
Q Consensus 4 ~~v~Fya~-~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~----- 56 (319)
++|.||++ |||+|+...|.+.++++.+... .+.++.|..+. +..+.+.|++.
T Consensus 31 ~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 109 (146)
T PF08534_consen 31 VVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIMEDP 109 (146)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEECCT
T ss_pred EEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcccccc
Confidence 68999999 9999999999999999987763 46666666542 34688899988
Q ss_pred ----cCCeEEeccCCCCCCcccCCCCC
Q 020926 57 ----GYPTIQWFPKGSLEPKKYEGPRS 79 (319)
Q Consensus 57 ----~~Pt~~~~~~~~~~~~~y~g~~~ 79 (319)
++|++++++.++.......|..+
T Consensus 110 ~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 110 GNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp TTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99999999887765555555544
No 210
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.73 E-value=2.2e-07 Score=74.59 Aligned_cols=95 Identities=16% Similarity=0.247 Sum_probs=71.8
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc-----------------------------chhhH
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------------YKDLA 169 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~-----------------------------~~~l~ 169 (319)
.++++++.||++||+.|....+.+.++..++.. .++.++.|..+. ...++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 678999999999999999999999999999964 357777776543 11567
Q ss_pred hhcCCccccEEEEEeCCCcCeeec---------CCCCCHHHHHHHHHHhhCCCC
Q 020926 170 EKYGVSGFPTLKFFPKGNKDGEEY---------GGGRDLEDFVSFINEKCGTSR 214 (319)
Q Consensus 170 ~~~~v~~~Pti~~~~~g~~~~~~~---------~g~~~~~~l~~~i~~~~~~~~ 214 (319)
+.|++...|+++++.++++..... .+..+.+++.+-|+..+....
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 789999999999998776543221 123466888888888775443
No 211
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.71 E-value=5.7e-08 Score=79.72 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=36.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecc
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 44 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~ 44 (319)
.++|.|||+||++|+...|.+.++.+.+.+. .+.++.|+|+
T Consensus 41 vvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~ 81 (199)
T PTZ00056 41 VLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTS 81 (199)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecch
Confidence 3789999999999999999999999999763 4888899873
No 212
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.71 E-value=3.1e-08 Score=75.87 Aligned_cols=68 Identities=18% Similarity=0.361 Sum_probs=54.7
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCC-ceEEEEEecccc-------------------------hhhhhhcCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAK-SVLIGKVDCDEH-------------------------KSLCSKYGVQ 56 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~-~v~~~~vd~~~~-------------------------~~l~~~~~i~ 56 (319)
.|.++|.|.||++|+.+.|.+.++.+..+..+ .+.++-|+.|.+ .+++++|+|.
T Consensus 35 vV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~ 114 (157)
T KOG2501|consen 35 VVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVK 114 (157)
T ss_pred EEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccC
Confidence 57899999999999999999999999987753 455555555421 3688899999
Q ss_pred cCCeEEeccCCCCC
Q 020926 57 GYPTIQWFPKGSLE 70 (319)
Q Consensus 57 ~~Pt~~~~~~~~~~ 70 (319)
+.|++.+..+.+..
T Consensus 115 ~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 115 GIPALVILKPDGTV 128 (157)
T ss_pred cCceeEEecCCCCE
Confidence 99999999877643
No 213
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.71 E-value=6.4e-08 Score=80.88 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=62.5
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc-------c----hhhh-hhcCC---------------
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------H----KSLC-SKYGV--------------- 55 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~-------~----~~l~-~~~~i--------------- 55 (319)
.++|.||++||++|....|.+.++++.+++. .+.++.|+|+. + ..++ +++++
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~ 179 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPST 179 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcchh
Confidence 4799999999999999999999999999764 48888888741 1 2222 23322
Q ss_pred -------------------CcCCeEEeccCCCCCCcccCCCCChHHHHHHHHhc
Q 020926 56 -------------------QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 90 (319)
Q Consensus 56 -------------------~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~ 90 (319)
.+.|+..+++.++....+|.|..+.+.|...|+..
T Consensus 180 ~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 180 APVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred hHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 22466667766665667777877777777777654
No 214
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.7e-08 Score=79.26 Aligned_cols=88 Identities=24% Similarity=0.519 Sum_probs=73.7
Q ss_pred CCCceEEc-CccChHHHh-hcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCc--
Q 020926 100 VPSNVVVL-TADNFDEIV-LDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS-- 175 (319)
Q Consensus 100 ~~~~v~~l-~~~~f~~~~-~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~-- 175 (319)
-|..+... +.+.++..+ -+....++|.|+|.|.+.|....|.|.+++.+|.. +.+.|++||+...++.+++|+|+
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~-~~lkFGkvDiGrfpd~a~kfris~s 200 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN-NLLKFGKVDIGRFPDVAAKFRISLS 200 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC-CCCcccceeeccCcChHHheeeccC
Confidence 45667778 555555555 23457899999999999999999999999999964 57999999999999999999987
Q ss_pred ----cccEEEEEeCCCc
Q 020926 176 ----GFPTLKFFPKGNK 188 (319)
Q Consensus 176 ----~~Pti~~~~~g~~ 188 (319)
..||+.+|++|.+
T Consensus 201 ~~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKE 217 (265)
T ss_pred cccccCCeEEEEccchh
Confidence 4899999998853
No 215
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.67 E-value=8.7e-08 Score=65.15 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=52.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchh----hhhhcCCCcCCeEEeccCCCCCCcccCCCCCh
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 80 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~ 80 (319)
+..|+++||++|+++.+.|++. .+.+..+|.+.+.. +++.+++.++|++.+. |. ...| .+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~----~~~g-~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK----IIVG-FDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE----EEee-CCH
Confidence 5689999999999999888652 37788889887644 5677999999999875 32 2445 577
Q ss_pred HHHHHHHH
Q 020926 81 EALAEYVN 88 (319)
Q Consensus 81 ~~i~~~i~ 88 (319)
+.|.+|++
T Consensus 67 ~~i~~~i~ 74 (74)
T TIGR02196 67 EKLDQLLE 74 (74)
T ss_pred HHHHHHhC
Confidence 88888763
No 216
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.67 E-value=3.4e-08 Score=75.66 Aligned_cols=70 Identities=26% Similarity=0.493 Sum_probs=54.2
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCC-CCeEEEEEeCccc--h-----------------------hhHhhc
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY--K-----------------------DLAEKY 172 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~-~~~~~~~vd~~~~--~-----------------------~l~~~~ 172 (319)
.++.+.++|.|.||+||+.+.|.+.++..+.+.+ ..+.++-|+.|.+ + +++.+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5699999999999999999999999888887643 2344444444422 1 688899
Q ss_pred CCccccEEEEEeCCCc
Q 020926 173 GVSGFPTLKFFPKGNK 188 (319)
Q Consensus 173 ~v~~~Pti~~~~~g~~ 188 (319)
+|.+.|++++..+++.
T Consensus 112 ~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGT 127 (157)
T ss_pred ccCcCceeEEecCCCC
Confidence 9999999999877653
No 217
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.67 E-value=9.1e-08 Score=71.08 Aligned_cols=71 Identities=25% Similarity=0.431 Sum_probs=60.1
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecc-cchhhhhhcC--CCcCCeEEeccCCCCCCcccCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-EHKSLCSKYG--VQGYPTIQWFPKGSLEPKKYEG 76 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~~~~--i~~~Pt~~~~~~~~~~~~~y~g 76 (319)
.+++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. ..+.+...|+ +..+|++.++.++.. ...+.+
T Consensus 34 ~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~ 107 (127)
T COG0526 34 PVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLVG 107 (127)
T ss_pred eEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhhh
Confidence 568888999999999999999999999854 5889999997 7889999999 999999998877764 334444
No 218
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.3e-08 Score=79.66 Aligned_cols=67 Identities=19% Similarity=0.355 Sum_probs=61.4
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCC------cCCeEEeccCCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ------GYPTIQWFPKGSLE 70 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~------~~Pt~~~~~~~~~~ 70 (319)
+++|+|||-|.+.|.+++|.|.+++..|.. ..+.|++||...-++.+.+|+|. ..||+++|.+|+..
T Consensus 146 ~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~-~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 146 YWLIEFFACWSPKCVRFSPVFAELSIKYNN-NLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred EEEEEEEeecChhhcccccccHHHHHHhCC-CCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhh
Confidence 689999999999999999999999999976 46999999999999999999886 67999999999754
No 219
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.65 E-value=2.8e-07 Score=72.49 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=37.3
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeC
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 162 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~ 162 (319)
.+++++|.||++||++|+...|.+.++.+.|+.. ++.+..|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEec
Confidence 4688999999999999999999999999999744 577777764
No 220
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.65 E-value=1.3e-07 Score=74.29 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=36.3
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeC
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 162 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~ 162 (319)
.+++++|.||++||+ |+...|.+.++.++|+.. ++.+..|.+
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~ 62 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPC 62 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEecc
Confidence 478999999999999 999999999999999644 577777754
No 221
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.62 E-value=1.3e-07 Score=64.36 Aligned_cols=69 Identities=20% Similarity=0.404 Sum_probs=52.3
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchh----hHhhcCCccccEEEEEeCCCcCeeecCCCCCH
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 199 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~ 199 (319)
+..|+++||++|+...+.+++. ++.+..+|++.++. +.+.+++.++|++++. | + ...| .+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-~---~~~g-~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-K---IIVG-FDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-E---EEee-CCH
Confidence 5689999999999998888652 46777888876543 5677999999999875 3 2 2455 577
Q ss_pred HHHHHHHH
Q 020926 200 EDFVSFIN 207 (319)
Q Consensus 200 ~~l~~~i~ 207 (319)
+.|.+||+
T Consensus 67 ~~i~~~i~ 74 (74)
T TIGR02196 67 EKLDQLLE 74 (74)
T ss_pred HHHHHHhC
Confidence 88888874
No 222
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.62 E-value=1.9e-07 Score=69.28 Aligned_cols=73 Identities=40% Similarity=0.765 Sum_probs=62.0
Q ss_pred CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc-cchhhHhhcC--CccccEEEEEeCCCcCeeecCC
Q 020926 120 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYG--VSGFPTLKFFPKGNKDGEEYGG 195 (319)
Q Consensus 120 ~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~-~~~~l~~~~~--v~~~Pti~~~~~g~~~~~~~~g 195 (319)
++++++.||++||++|+...|.+.++++.+.. .+.+..++.. .+.++...|+ +..+|++.++.++.. ...+.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhhh
Confidence 77899999999999999999999999999853 5888888886 7888999999 999999998887754 444444
No 223
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.61 E-value=2.2e-07 Score=75.75 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=57.3
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEec------------------ccchhhhhhcCCCcCCeEEec
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC------------------DEHKSLCSKYGVQGYPTIQWF 64 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~------------------~~~~~l~~~~~i~~~Pt~~~~ 64 (319)
.++|.||++||++|++..|.+.++.+... .++.++..|- ....++++.|++.++|+.+++
T Consensus 76 ~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lI 153 (189)
T TIGR02661 76 PTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLL 153 (189)
T ss_pred EEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEEE
Confidence 37899999999999999999999887542 2344443221 013467788999999998888
Q ss_pred cCCCCCCcccCCC-CChHHHHHHHHh
Q 020926 65 PKGSLEPKKYEGP-RSTEALAEYVNN 89 (319)
Q Consensus 65 ~~~~~~~~~y~g~-~~~~~i~~~i~~ 89 (319)
++++. ..+.|. ...+.+.+.++.
T Consensus 154 D~~G~--I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 154 DQDGK--IRAKGLTNTREHLESLLEA 177 (189)
T ss_pred CCCCe--EEEccCCCCHHHHHHHHHH
Confidence 76654 344454 344566666654
No 224
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.60 E-value=1.4e-07 Score=61.79 Aligned_cols=60 Identities=35% Similarity=0.559 Sum_probs=50.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhh---hcCCCcCCeEEeccCC
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCS---KYGVQGYPTIQWFPKG 67 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~Pt~~~~~~~ 67 (319)
++.||++||++|+++.+.+.++ ... ...+.++.+|++....... .+++..+|+++++.++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALL--NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hhh--CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 222 2469999999998876665 8899999999999877
No 225
>PLN02412 probable glutathione peroxidase
Probab=98.60 E-value=2.3e-07 Score=74.02 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=36.3
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecc
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 44 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~ 44 (319)
.++|.||++||++|+...|.+.++.+.+++. .+.++.|+++
T Consensus 31 ~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~ 71 (167)
T PLN02412 31 VLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCN 71 (167)
T ss_pred EEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEeccc
Confidence 3789999999999999999999999999864 4888888874
No 226
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.5e-07 Score=73.79 Aligned_cols=155 Identities=14% Similarity=0.203 Sum_probs=98.7
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
+.+++||++||..|+.+...++.+++..+ ++.+++++.++.++++..+.+...|++.++..+... .+..|......
T Consensus 19 ~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v-~~l~~~~~~~~ 94 (227)
T KOG0911|consen 19 LLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKV-DRLSGADPPFL 94 (227)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhh-hhhhccCcHHH
Confidence 46889999999999999999999999883 499999999999999999999999999999777643 55555544433
Q ss_pred HHHHHHhcCCCC-ccccCCCCceEEc-------CccChHHHhhcCCCcEEEEEE-----CCCCccccchHHHHHHHHHHh
Q 020926 83 LAEYVNNEGGTN-VKIAAVPSNVVVL-------TADNFDEIVLDKSKDVLVEFY-----APWCGHCKNLAPTYEKVAAAF 149 (319)
Q Consensus 83 i~~~i~~~~~~~-~~~~~~~~~v~~l-------~~~~f~~~~~~~~~~v~v~F~-----~~wC~~C~~~~~~~~~la~~~ 149 (319)
...+-.-..... .........+.+. .....++.+ +..-++.|- .|-||..+++.-++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv---~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~---- 167 (227)
T KOG0911|consen 95 VSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLV---KAKPVMLFMKGTPEEPKCGFSRQLVGILQSH---- 167 (227)
T ss_pred HHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhc---ccCeEEEEecCCCCcccccccHHHHHHHHHc----
Confidence 333322111111 0000011111111 111233333 222333443 36777777776666554
Q ss_pred cCCCCeEEEEEeCccchhhHhhc
Q 020926 150 TLEDDVVVANLDADKYKDLAEKY 172 (319)
Q Consensus 150 ~~~~~~~~~~vd~~~~~~l~~~~ 172 (319)
++.+...|+-.++++.+..
T Consensus 168 ----nV~~~~fdIL~DeelRqgl 186 (227)
T KOG0911|consen 168 ----NVNYTIFDVLTDEELRQGL 186 (227)
T ss_pred ----CCCeeEEeccCCHHHHHHh
Confidence 4568888888777765543
No 227
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.55 E-value=8.3e-07 Score=76.04 Aligned_cols=107 Identities=22% Similarity=0.311 Sum_probs=77.7
Q ss_pred CceEEcCccChHHHhhcCCCcEEEEEECCCCccccch------HHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCc
Q 020926 102 SNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNL------APTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 175 (319)
Q Consensus 102 ~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~------~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~ 175 (319)
..|..|+..||.+.+ .+....+|+|+.|--.. +.. ...+-+|+.+.-....+.|+.||...+..+++++|+.
T Consensus 34 DRVi~LneKNfk~~l-Kkyd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 34 DRVIDLNEKNFKRAL-KKYDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp --CEEE-TTTHHHHH-HH-SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred cceEEcchhHHHHHH-HhhcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 468999999999988 77778888888885322 222 2334455555444568999999999999999999999
Q ss_pred cccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhhCC
Q 020926 176 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 212 (319)
Q Consensus 176 ~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~ 212 (319)
..+++.+|.+| ..+.|.|.++++.++.||-+....
T Consensus 112 E~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 112 EEGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLED 146 (383)
T ss_dssp STTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSS
T ss_pred ccCcEEEEECC--cEEEecCccCHHHHHHHHHHhccc
Confidence 99999999998 678999999999999999998753
No 228
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.54 E-value=3.4e-07 Score=75.79 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=62.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecc-----------cchhhhhhcCCCcCCeEEeccCCCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD-----------EHKSLCSKYGVQGYPTIQWFPKGSLEP 71 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~-----------~~~~l~~~~~i~~~Pt~~~~~~~~~~~ 71 (319)
+.|+.||.+.|+.|+.+.|++..+++.+. +.+..|+.| .+..+++++||..+|++++...++...
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKYG----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHhC----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 46899999999999999999999999982 555555554 457899999999999999998766322
Q ss_pred c-ccCCCCChHHHHH
Q 020926 72 K-KYEGPRSTEALAE 85 (319)
Q Consensus 72 ~-~y~g~~~~~~i~~ 85 (319)
. .-.|..+.++|.+
T Consensus 198 ~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 198 YPVSQGFMSLDELED 212 (215)
T ss_pred EEEeeecCCHHHHHH
Confidence 2 2238888888765
No 229
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.53 E-value=5.2e-07 Score=72.41 Aligned_cols=89 Identities=13% Similarity=0.256 Sum_probs=65.5
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc-----------------------------chhhhhhc
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-----------------------------HKSLCSKY 53 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~-----------------------------~~~l~~~~ 53 (319)
.++|.||++||+.|....|.+.++.+++++ .++.++.|.++. +..+++.|
T Consensus 27 ~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 105 (171)
T cd02969 27 ALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKAY 105 (171)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHHc
Confidence 479999999999999999999999999975 358888887642 23467789
Q ss_pred CCCcCCeEEeccCCCCCCccc---------CCCCChHHHHHHHHhcCC
Q 020926 54 GVQGYPTIQWFPKGSLEPKKY---------EGPRSTEALAEYVNNEGG 92 (319)
Q Consensus 54 ~i~~~Pt~~~~~~~~~~~~~y---------~g~~~~~~i~~~i~~~~~ 92 (319)
++...|+++++++++...... .+..+...+.+-|.....
T Consensus 106 ~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 106 GAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred CCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 999999999998766432221 122355677777776443
No 230
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.52 E-value=2.1e-07 Score=73.10 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=34.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecc
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 44 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~ 44 (319)
.++|.|||+||+ |+...|.+.++++.+.+. .+.++.|+++
T Consensus 24 ~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~ 63 (152)
T cd00340 24 VLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCN 63 (152)
T ss_pred EEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccC
Confidence 478999999999 999999999999999653 4888888763
No 231
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1e-06 Score=66.73 Aligned_cols=89 Identities=22% Similarity=0.363 Sum_probs=70.7
Q ss_pred hcCCCcEEEEEECCCCccccchHHHHH---HHHHHhcCCCCeEEEEEeCcc----------------chhhHhhcCCccc
Q 020926 117 LDKSKDVLVEFYAPWCGHCKNLAPTYE---KVAAAFTLEDDVVVANLDADK----------------YKDLAEKYGVSGF 177 (319)
Q Consensus 117 ~~~~~~v~v~F~~~wC~~C~~~~~~~~---~la~~~~~~~~~~~~~vd~~~----------------~~~l~~~~~v~~~ 177 (319)
...++..++.|-.+.|..|.++...+. ++-+.+. +++.++.++++. ..+|++.|+|+++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk--~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK--EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh--hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 357899999999999999999977543 3333443 456776666542 2489999999999
Q ss_pred cEEEEEeCCCcCeeecCCCCCHHHHHHHHH
Q 020926 178 PTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 207 (319)
Q Consensus 178 Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~ 207 (319)
||++||+..|+......|...++++...++
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 999999988888888999999999887765
No 232
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.51 E-value=3.2e-07 Score=73.46 Aligned_cols=79 Identities=10% Similarity=0.054 Sum_probs=59.9
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEE------EEEeccc-----------------------------chh
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLI------GKVDCDE-----------------------------HKS 48 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~------~~vd~~~-----------------------------~~~ 48 (319)
.+|+|||.||++|+.-+|.++++++. ++.+ ..||.++ +..
T Consensus 62 ~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~ 136 (184)
T TIGR01626 62 RVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGA 136 (184)
T ss_pred EEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcch
Confidence 68999999999999999999999653 1333 4444432 224
Q ss_pred hhhhcCCCcCCeE-EeccCCCCCCcccCCCCChHHHHHHH
Q 020926 49 LCSKYGVQGYPTI-QWFPKGSLEPKKYEGPRSTEALAEYV 87 (319)
Q Consensus 49 l~~~~~i~~~Pt~-~~~~~~~~~~~~y~g~~~~~~i~~~i 87 (319)
+...|++.++|+. ++++..+.....+.|..+.+++.+.+
T Consensus 137 v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 137 VKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred HHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 5668899999877 78888776777888998888877644
No 233
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.49 E-value=5e-07 Score=62.05 Aligned_cols=69 Identities=25% Similarity=0.377 Sum_probs=47.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhh-----cCCCcCCeEEeccCCCCCCcccCCCCC
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSK-----YGVQGYPTIQWFPKGSLEPKKYEGPRS 79 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~-----~~i~~~Pt~~~~~~~~~~~~~y~g~~~ 79 (319)
++.|+++||++|+++.+.+.++. +.+-.+|.+++...... +++.++|++ ++.+|... ...+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l-----~~~~ 67 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL-----TNPS 67 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe-----cCCC
Confidence 57899999999999999887653 44556888777665555 389999997 46655321 2344
Q ss_pred hHHHHHHH
Q 020926 80 TEALAEYV 87 (319)
Q Consensus 80 ~~~i~~~i 87 (319)
..++.+.+
T Consensus 68 ~~~~~~~l 75 (77)
T TIGR02200 68 AAQVKAKL 75 (77)
T ss_pred HHHHHHHh
Confidence 55555554
No 234
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.49 E-value=6.2e-07 Score=61.48 Aligned_cols=73 Identities=22% Similarity=0.418 Sum_probs=55.7
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCC-CCChHHHH
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEG-PRSTEALA 84 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g-~~~~~~i~ 84 (319)
|.+++++|++|..+...+.+++..+ + +.+-.+|..+.+++ .+|||.++|++++ +|. ..+.| ..+.+.|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~---~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~---~~~~G~~p~~~el~ 72 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL---G-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK---VVFVGRVPSKEELK 72 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT---T-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE---EEEESS--HHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc---C-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE---EEEEecCCCHHHHH
Confidence 3447889999999999999999887 2 66666777666666 9999999999955 554 67888 77888888
Q ss_pred HHHH
Q 020926 85 EYVN 88 (319)
Q Consensus 85 ~~i~ 88 (319)
+|++
T Consensus 73 ~~l~ 76 (76)
T PF13192_consen 73 ELLE 76 (76)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8874
No 235
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.46 E-value=1.1e-06 Score=67.85 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=64.0
Q ss_pred CCCcEEEEEE-CCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc---------------------hhhHhhcCCcc
Q 020926 119 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------KDLAEKYGVSG 176 (319)
Q Consensus 119 ~~~~v~v~F~-~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~---------------------~~l~~~~~v~~ 176 (319)
.+++++|.|| +.||+.|....+.+.++...+.. .++.++.|..+.. ..+++.|++..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG 100 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence 3788999999 58999999999999999998864 3466665554422 25777788887
Q ss_pred c---------cEEEEEeCCCcCeeecCCCCCHHHHHHH
Q 020926 177 F---------PTLKFFPKGNKDGEEYGGGRDLEDFVSF 205 (319)
Q Consensus 177 ~---------Pti~~~~~g~~~~~~~~g~~~~~~l~~~ 205 (319)
. |+.++++++++....+.|....+.+.+-
T Consensus 101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred ccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 7 8888888777777777777665555443
No 236
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.45 E-value=8.6e-07 Score=69.74 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=35.0
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEec
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 43 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~ 43 (319)
++|.|||+||++|+...|.+.++.+.+.+. .+.++.|+|
T Consensus 25 vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~ 63 (153)
T TIGR02540 25 SLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPC 63 (153)
T ss_pred EEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEec
Confidence 678899999999999999999999999753 588999986
No 237
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.44 E-value=1.9e-06 Score=69.91 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=34.7
Q ss_pred CCCcE-EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeC
Q 020926 119 KSKDV-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 162 (319)
Q Consensus 119 ~~~~v-~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~ 162 (319)
.++++ ++.+|++||++|+...|.+.++.+.|+.. ++.++.|++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~ 82 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPC 82 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEec
Confidence 45654 55669999999999999999999999754 577777765
No 238
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.42 E-value=1e-06 Score=60.51 Aligned_cols=69 Identities=20% Similarity=0.390 Sum_probs=46.5
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhh-----cCCccccEEEEEeCCCcCeeecCCCCC
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEK-----YGVSGFPTLKFFPKGNKDGEEYGGGRD 198 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~-----~~v~~~Pti~~~~~g~~~~~~~~g~~~ 198 (319)
++.|+++||++|+.+.+.+.+++ +.+-.+|++.++..... +++.++|++ ++.+|. . ....+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~--~---l~~~~ 67 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGS--F---LTNPS 67 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCe--E---ecCCC
Confidence 57899999999999999987663 33445777766655555 388899997 465552 1 22344
Q ss_pred HHHHHHHH
Q 020926 199 LEDFVSFI 206 (319)
Q Consensus 199 ~~~l~~~i 206 (319)
..++.+.+
T Consensus 68 ~~~~~~~l 75 (77)
T TIGR02200 68 AAQVKAKL 75 (77)
T ss_pred HHHHHHHh
Confidence 55555544
No 239
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.40 E-value=2.1e-06 Score=71.08 Aligned_cols=83 Identities=23% Similarity=0.259 Sum_probs=66.7
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc-----------cchhhHhhcCCccccEEEEEeCCC
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------KYKDLAEKYGVSGFPTLKFFPKGN 187 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~-----------~~~~l~~~~~v~~~Pti~~~~~g~ 187 (319)
.++.-++.||.+.|+.|+.+.|++..+++.+ ++.+..|+.| .+.++++++||..+|++++...++
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y----g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY----GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh----CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence 4677899999999999999999999999998 3555555555 357899999999999999998776
Q ss_pred c-CeeecCCCCCHHHHHHH
Q 020926 188 K-DGEEYGGGRDLEDFVSF 205 (319)
Q Consensus 188 ~-~~~~~~g~~~~~~l~~~ 205 (319)
. ....-.|..+.++|.+=
T Consensus 195 ~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CeEEEEeeecCCHHHHHHh
Confidence 4 33335677888887653
No 240
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.38 E-value=3.2e-06 Score=67.94 Aligned_cols=90 Identities=17% Similarity=0.222 Sum_probs=65.0
Q ss_pred CCCcEEEEEE-CCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc----------------------------chhhH
Q 020926 119 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA 169 (319)
Q Consensus 119 ~~~~v~v~F~-~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~----------------------------~~~l~ 169 (319)
.++.++|.|| +.||++|....+.+.++++.|... ++.+..|..+. ...++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 106 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS 106 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence 4688999999 899999999999999999999643 45555554432 12466
Q ss_pred hhcCCc------cccEEEEEeCCCcCeeecCC----CCCHHHHHHHHHHh
Q 020926 170 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK 209 (319)
Q Consensus 170 ~~~~v~------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~ 209 (319)
+.|++. ..|+.++++++++....+.+ .++.+++...|+..
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 677875 46788888877765555533 35677788887654
No 241
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.38 E-value=1.2e-06 Score=57.31 Aligned_cols=60 Identities=42% Similarity=0.843 Sum_probs=49.8
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHh---hcCCccccEEEEEeCC
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE---KYGVSGFPTLKFFPKG 186 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~---~~~v~~~Pti~~~~~g 186 (319)
++.|+.+||++|..+.+.+.++ ... ..++.+..++++...+... .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALL--NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hhh--CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 222 3579999999987765554 7899999999999876
No 242
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.36 E-value=2.1e-06 Score=64.75 Aligned_cols=69 Identities=23% Similarity=0.560 Sum_probs=56.7
Q ss_pred CCCcEEEEEECC-CCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch---------------------hhHhhcCCc-
Q 020926 119 KSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---------------------DLAEKYGVS- 175 (319)
Q Consensus 119 ~~~~v~v~F~~~-wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~---------------------~l~~~~~v~- 175 (319)
.+++++|.||+. ||++|....+.+.++..+++.. ++.++.|..+... .+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 568999999999 9999999999999999998743 6777777665322 677788888
Q ss_pred -----cccEEEEEeCCCc
Q 020926 176 -----GFPTLKFFPKGNK 188 (319)
Q Consensus 176 -----~~Pti~~~~~g~~ 188 (319)
.+|+++++.+++.
T Consensus 103 ~~~~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGK 120 (124)
T ss_dssp TTTSEESEEEEEEETTSB
T ss_pred ccCCceEeEEEEECCCCE
Confidence 8899999987764
No 243
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.36 E-value=2.3e-06 Score=58.68 Aligned_cols=72 Identities=24% Similarity=0.540 Sum_probs=55.0
Q ss_pred EEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCC-CCCHHHHHH
Q 020926 126 EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG-GRDLEDFVS 204 (319)
Q Consensus 126 ~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g-~~~~~~l~~ 204 (319)
.+++++|+.|..+...+.+++..+ ++.+-.+|.++.+++ .+|||.++|++++ +| ...+.| ..+.++|.+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~----~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng---~~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL----GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NG---KVVFVGRVPSKEELKE 73 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT----TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TT---EEEEESS--HHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc----CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CC---EEEEEecCCCHHHHHH
Confidence 336888999999999999999887 355666667777777 9999999999955 34 366888 788999998
Q ss_pred HHH
Q 020926 205 FIN 207 (319)
Q Consensus 205 ~i~ 207 (319)
||+
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 244
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.34 E-value=1.1e-06 Score=66.70 Aligned_cols=84 Identities=24% Similarity=0.495 Sum_probs=53.2
Q ss_pred CccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhc---CCccccEEEEEe
Q 020926 108 TADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY---GVSGFPTLKFFP 184 (319)
Q Consensus 108 ~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~---~v~~~Pti~~~~ 184 (319)
+.+....+.....+..++.|..+|||.|....|.+.++++.. +++.+-.+..+++.++..+| |..++|++++++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~---p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d 105 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEAN---PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLD 105 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH----TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC---CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEc
Confidence 333334433335567889999999999999999999999985 46777777778888877766 567899999997
Q ss_pred CCCcCeeecC
Q 020926 185 KGNKDGEEYG 194 (319)
Q Consensus 185 ~g~~~~~~~~ 194 (319)
.+++....+.
T Consensus 106 ~~~~~lg~wg 115 (129)
T PF14595_consen 106 KDGKELGRWG 115 (129)
T ss_dssp TT--EEEEEE
T ss_pred CCCCEeEEEc
Confidence 7655444443
No 245
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.34 E-value=2.3e-06 Score=72.13 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=64.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc-----------hhhhhhcCCCcCCeEEeccCCCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-----------KSLCSKYGVQGYPTIQWFPKGSLEP 71 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~-----------~~l~~~~~i~~~Pt~~~~~~~~~~~ 71 (319)
+.++.||.+.|++|+.+.|.+..+++.+. +.+..|+.|.. ..+++++||..+|++++...+....
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~yg----i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYG----ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 46899999999999999999999999982 55555555432 5688999999999999998775332
Q ss_pred ccc-CCCCChHHHHHHHHh
Q 020926 72 KKY-EGPRSTEALAEYVNN 89 (319)
Q Consensus 72 ~~y-~g~~~~~~i~~~i~~ 89 (319)
... .|..+.++|.+=+..
T Consensus 228 ~pv~~G~iS~deL~~Ri~~ 246 (256)
T TIGR02739 228 SPLAYGFISQDELKERILN 246 (256)
T ss_pred EEEeeccCCHHHHHHHHHH
Confidence 222 388899998765544
No 246
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.34 E-value=3.1e-06 Score=72.06 Aligned_cols=104 Identities=21% Similarity=0.316 Sum_probs=75.1
Q ss_pred CCceEEcC-ccChHHHhhcC--CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccc
Q 020926 101 PSNVVVLT-ADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF 177 (319)
Q Consensus 101 ~~~v~~l~-~~~f~~~~~~~--~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~ 177 (319)
-..|.+++ ++.|-+.+... +..|+|.||.+.++.|..+...|..||..| +.+.|++|..+..+ +...|.+..+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky---p~vKFvkI~a~~~~-~~~~f~~~~L 199 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY---PEVKFVKIRASKCP-ASENFPDKNL 199 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH----TTSEEEEEEECGCC-TTTTS-TTC-
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC---CceEEEEEehhccC-cccCCcccCC
Confidence 35678885 47888887433 346899999999999999999999999998 68999999987665 7889999999
Q ss_pred cEEEEEeCCCcCeeecC-------CCCCHHHHHHHHHHh
Q 020926 178 PTLKFFPKGNKDGEEYG-------GGRDLEDFVSFINEK 209 (319)
Q Consensus 178 Pti~~~~~g~~~~~~~~-------g~~~~~~l~~~i~~~ 209 (319)
||+++|.+|. ....+. ...+.++|..||.++
T Consensus 200 PtllvYk~G~-l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 200 PTLLVYKNGD-LIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp SEEEEEETTE-EEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CEEEEEECCE-EEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999874 332222 246788888888864
No 247
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.30 E-value=6.1e-06 Score=65.86 Aligned_cols=42 Identities=21% Similarity=0.417 Sum_probs=34.6
Q ss_pred CCCcEEEEEECCC-CccccchHHHHHHHHHHhcCCCCeEEEEEeCc
Q 020926 119 KSKDVLVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163 (319)
Q Consensus 119 ~~~~v~v~F~~~w-C~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~ 163 (319)
.+++++|.||++| |++|....|.+.++++++. ++.++.|..+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D 85 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISAD 85 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCC
Confidence 4679999999999 9999999999999999873 4556555554
No 248
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.29 E-value=5.4e-06 Score=64.67 Aligned_cols=95 Identities=17% Similarity=0.445 Sum_probs=59.4
Q ss_pred HHHHHhcCCCCccccCCCCceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHH-HH--HHHHHHhcCCCCeEEEEE
Q 020926 84 AEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAP-TY--EKVAAAFTLEDDVVVANL 160 (319)
Q Consensus 84 ~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~-~~--~~la~~~~~~~~~~~~~v 160 (319)
.-|+.++...++. -...+.+.|...- ..+++++|.++.+||+.|+.|.. .| .++|..+ +.+++-++|
T Consensus 9 Spyl~~ha~~~V~-------W~~w~~ea~~~Ak-~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~l--N~~FI~Vkv 78 (163)
T PF03190_consen 9 SPYLRQHAHNPVN-------WQPWGEEALEKAK-KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYL--NRNFIPVKV 78 (163)
T ss_dssp -HHHHTTTTSSS---------B-SSHHHHHHHH-HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHH--HHH-EEEEE
T ss_pred CHHHHHhccCCCC-------cccCCHHHHHHHH-hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHH--hCCEEEEEe
Confidence 3456665554332 3334555666665 78899999999999999999975 33 3455555 246899999
Q ss_pred eCccchhhHhhc--------CCccccEEEEEeCCCc
Q 020926 161 DADKYKDLAEKY--------GVSGFPTLKFFPKGNK 188 (319)
Q Consensus 161 d~~~~~~l~~~~--------~v~~~Pti~~~~~g~~ 188 (319)
|.++.+++...| |..++|+.+|..+.++
T Consensus 79 Dree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 79 DREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGK 114 (163)
T ss_dssp ETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-
T ss_pred ccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCC
Confidence 999999998888 7889999999987764
No 249
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.27 E-value=1.2e-05 Score=63.26 Aligned_cols=80 Identities=23% Similarity=0.256 Sum_probs=54.3
Q ss_pred CCCcEEEEEECC-CCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch---------------------hhHhhcCCcc
Q 020926 119 KSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---------------------DLAEKYGVSG 176 (319)
Q Consensus 119 ~~~~v~v~F~~~-wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~---------------------~l~~~~~v~~ 176 (319)
.+++++|.||+. ||+.|....+.+.++.+.+... ++.++.|..+... .+++.|++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 568899999976 6888999999999999998643 5667666654322 4556666643
Q ss_pred c------------cEEEEEeCCCcCeeecCCCCCH
Q 020926 177 F------------PTLKFFPKGNKDGEEYGGGRDL 199 (319)
Q Consensus 177 ~------------Pti~~~~~g~~~~~~~~g~~~~ 199 (319)
. |+.++++++++....+.|....
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~ 142 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS 142 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcCCCcc
Confidence 2 5556666555555566664433
No 250
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.27 E-value=2.9e-06 Score=65.57 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=56.4
Q ss_pred eEEEEE-cCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc---------------------chhhhhhcCCCcC---
Q 020926 4 NAFCVK-CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------HKSLCSKYGVQGY--- 58 (319)
Q Consensus 4 ~~v~Fy-a~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~~~--- 58 (319)
++|.|| +.||+.|....|.+.++.+.+.. .++.++.|..+. +..+++.|++...
T Consensus 26 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~ 104 (140)
T cd03017 26 VVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKKK 104 (140)
T ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccc
Confidence 678888 58999999999999999998875 347777766542 2356666777766
Q ss_pred ------CeEEeccCCCCCCcccCCCCChHHHHH
Q 020926 59 ------PTIQWFPKGSLEPKKYEGPRSTEALAE 85 (319)
Q Consensus 59 ------Pt~~~~~~~~~~~~~y~g~~~~~~i~~ 85 (319)
|+.+++++++.....+.|.....++.+
T Consensus 105 ~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 105 KYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred ccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 677777665545455556555554443
No 251
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.26 E-value=5e-06 Score=64.85 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=35.4
Q ss_pred CCCcEEEE-EECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch
Q 020926 119 KSKDVLVE-FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 166 (319)
Q Consensus 119 ~~~~v~v~-F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~ 166 (319)
.+++++|. |++.||++|+...|.+.++.+++.. .++.++.|..+...
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~~ 69 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESPE 69 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCHH
Confidence 33455555 4699999999999999999999864 35777777766443
No 252
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.26 E-value=1.3e-05 Score=57.60 Aligned_cols=87 Identities=26% Similarity=0.354 Sum_probs=68.3
Q ss_pred hHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCee
Q 020926 112 FDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 191 (319)
Q Consensus 112 f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~ 191 (319)
...++ .....++|.|+.++|+ .....|.++|..++. .+.|+.+. +.++++++++. -|++++|++....+.
T Consensus 10 l~~~~-~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~--~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~~~ 79 (97)
T cd02981 10 LEKFL-DKDDVVVVGFFKDEES---EEYKTFEKVAESLRD--DYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEEPV 79 (97)
T ss_pred HHHHh-ccCCeEEEEEECCCCc---HHHHHHHHHHHhccc--CCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccCCc
Confidence 44444 6788899999999876 577899999999863 57777654 56788888875 489999987655677
Q ss_pred ecCCCCCHHHHHHHHHH
Q 020926 192 EYGGGRDLEDFVSFINE 208 (319)
Q Consensus 192 ~~~g~~~~~~l~~~i~~ 208 (319)
.|.|..+.++|.+||..
T Consensus 80 ~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 80 EYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 79999999999999974
No 253
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.26 E-value=8.4e-06 Score=66.31 Aligned_cols=90 Identities=19% Similarity=0.109 Sum_probs=64.2
Q ss_pred CCCcEEEEEE-CCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc-------------------------cchhhHhhc
Q 020926 119 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-------------------------KYKDLAEKY 172 (319)
Q Consensus 119 ~~~~v~v~F~-~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~-------------------------~~~~l~~~~ 172 (319)
.+++++|.|| +.||++|....+.+.++...|+.. ++.++.|..+ ....+++.|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 4678999999 999999999999999999988643 3444444433 123677788
Q ss_pred CCc------cccEEEEEeCCCcCeeecC----CCCCHHHHHHHHHHh
Q 020926 173 GVS------GFPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINEK 209 (319)
Q Consensus 173 ~v~------~~Pti~~~~~g~~~~~~~~----g~~~~~~l~~~i~~~ 209 (319)
|+. ..|+.+++..++.....+. ..++.+++.+.|...
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 886 3599999977666444432 235788888887543
No 254
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.25 E-value=4.6e-06 Score=67.62 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=33.5
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecc
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD 44 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~ 44 (319)
+++.+||+||++|+..+|.+.++.+.+++. .+.++.|+|+
T Consensus 44 vlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~ 83 (183)
T PTZ00256 44 IIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCN 83 (183)
T ss_pred EEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecc
Confidence 344558999999999999999999999764 4888888864
No 255
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.24 E-value=2.2e-06 Score=59.94 Aligned_cols=54 Identities=22% Similarity=0.219 Sum_probs=41.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch-----hhhhhcCCCcCCeEE
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-----SLCSKYGVQGYPTIQ 62 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~ 62 (319)
++.|+++||++|+++.+.+.++. .+ +.+.+..||.+.+. .+.+.+++.++|++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~--~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK--PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC--CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 47899999999999999999876 21 23677777776443 266678999999984
No 256
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.24 E-value=2.5e-05 Score=59.38 Aligned_cols=108 Identities=17% Similarity=0.240 Sum_probs=78.4
Q ss_pred ceEEcCccChHH-HhhcCCCcEEEEEECC--CCcc-c-cchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCc--
Q 020926 103 NVVVLTADNFDE-IVLDKSKDVLVEFYAP--WCGH-C-KNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS-- 175 (319)
Q Consensus 103 ~v~~l~~~~f~~-~~~~~~~~v~v~F~~~--wC~~-C-~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~-- 175 (319)
.+.+|+.+++.+ .. ..++..+|.|... -|.+ + ......+.++|+.|+++ .+.|+.+|.++...+.+.||+.
T Consensus 3 ~~~~l~~~~~~~~~C-~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk-~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETC-EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK-PWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhc-cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEeCcccHHHHHHcCCCcc
Confidence 577787766644 44 4455555555432 1221 2 35577999999999743 2999999999998899999996
Q ss_pred cccEEEEEeCCCcCeee-cCCCCCHHHHHHHHHHhhCCC
Q 020926 176 GFPTLKFFPKGNKDGEE-YGGGRDLEDFVSFINEKCGTS 213 (319)
Q Consensus 176 ~~Pti~~~~~g~~~~~~-~~g~~~~~~l~~~i~~~~~~~ 213 (319)
++|+++++...+. .+. +.|..+.+.+.+|+++.....
T Consensus 81 ~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 81 GYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred CCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCC
Confidence 4999999987543 333 779999999999999987543
No 257
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.23 E-value=1.7e-05 Score=58.56 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=79.5
Q ss_pred eEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHH---hcCCCCeEEEEEeCccchhhHhhcCCcc--cc
Q 020926 104 VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA---FTLEDDVVVANLDADKYKDLAEKYGVSG--FP 178 (319)
Q Consensus 104 v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~---~~~~~~~~~~~vd~~~~~~l~~~~~v~~--~P 178 (319)
|++++.+++..+. ..+.+..+.|+.+ ..-....+.+.++|+. ++ +.+.|+.+|.+......+.||++. +|
T Consensus 1 ~~e~t~e~~~~~~-~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~k--gki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELT-EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEK--GAINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHh-cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcC--ceEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 4578889998777 6666666566633 2345678899999999 86 569999999998877899999997 99
Q ss_pred EEEEEeCCCcCeee-cCCCCCHHHHHHHHHHhhC
Q 020926 179 TLKFFPKGNKDGEE-YGGGRDLEDFVSFINEKCG 211 (319)
Q Consensus 179 ti~~~~~g~~~~~~-~~g~~~~~~l~~~i~~~~~ 211 (319)
.+.+....+...+. +.+..+.+.|.+|+.+...
T Consensus 76 ~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 76 VIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 99998765423344 6688999999999998753
No 258
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.22 E-value=8.2e-06 Score=60.65 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=66.9
Q ss_pred cCCCcEEEEEECC----CCccccchH--HHHHHHHHHhcCCCCeEEEEEeCc--cchhhHhhcCCccccEEEEEe---CC
Q 020926 118 DKSKDVLVEFYAP----WCGHCKNLA--PTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFP---KG 186 (319)
Q Consensus 118 ~~~~~v~v~F~~~----wC~~C~~~~--~~~~~la~~~~~~~~~~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~---~g 186 (319)
...|.++|+++++ ||..|+... |.+.+.-+ .++++...|++ +...++..+++++||++.++. +.
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln-----~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~ 89 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN-----TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNR 89 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH-----cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCc
Confidence 5789999999999 899997663 33333322 36888888877 445789999999999999983 22
Q ss_pred CcCeeecCCCCCHHHHHHHHHHhh
Q 020926 187 NKDGEEYGGGRDLEDFVSFINEKC 210 (319)
Q Consensus 187 ~~~~~~~~g~~~~~~l~~~i~~~~ 210 (319)
.....+..|..+++++...|+...
T Consensus 90 ~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 90 MTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred eEEEEEEeCCCCHHHHHHHHHHHH
Confidence 224667899999999999988654
No 259
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.20 E-value=5.7e-06 Score=62.38 Aligned_cols=66 Identities=18% Similarity=0.350 Sum_probs=52.5
Q ss_pred ceEEEEEcC-CChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc---------------------chhhhhhcCCC----
Q 020926 3 LNAFCVKCD-RCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------HKSLCSKYGVQ---- 56 (319)
Q Consensus 3 ~~~v~Fya~-~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~---- 56 (319)
.++|.||+. ||++|+...+.+.++...++. .++.++.|..+. +..+++.|++.
T Consensus 27 ~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 105 (124)
T PF00578_consen 27 PVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKD 105 (124)
T ss_dssp EEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTT
T ss_pred cEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccC
Confidence 478999998 999999999999999999975 358888887653 23567777777
Q ss_pred --cCCeEEeccCCCC
Q 020926 57 --GYPTIQWFPKGSL 69 (319)
Q Consensus 57 --~~Pt~~~~~~~~~ 69 (319)
.+|++.++++++.
T Consensus 106 ~~~~p~~~lid~~g~ 120 (124)
T PF00578_consen 106 TLALPAVFLIDPDGK 120 (124)
T ss_dssp SEESEEEEEEETTSB
T ss_pred CceEeEEEEECCCCE
Confidence 7788888777653
No 260
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.18 E-value=6.7e-06 Score=66.08 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=61.3
Q ss_pred ceEEEEE-cCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc----------------------------chhhhhhc
Q 020926 3 LNAFCVK-CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLCSKY 53 (319)
Q Consensus 3 ~~~v~Fy-a~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~~~~ 53 (319)
.++|.|| +.||++|....|.+.++++.+... ++.++.|.++. ...+++.|
T Consensus 31 ~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ 109 (173)
T cd03015 31 WVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDY 109 (173)
T ss_pred EEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHHh
Confidence 4788999 899999999999999999999763 46666666542 12455677
Q ss_pred CCC------cCCeEEeccCCCCCCcccC----CCCChHHHHHHHHhc
Q 020926 54 GVQ------GYPTIQWFPKGSLEPKKYE----GPRSTEALAEYVNNE 90 (319)
Q Consensus 54 ~i~------~~Pt~~~~~~~~~~~~~y~----g~~~~~~i~~~i~~~ 90 (319)
++. ..|+.+++++.+.....+. ..++.+++.+.++..
T Consensus 110 gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 110 GVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred CCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 775 4678888886665444442 234667777777653
No 261
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.17 E-value=3.6e-06 Score=58.81 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=41.7
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch-----hhHhhcCCccccEEE
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----DLAEKYGVSGFPTLK 181 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~-----~l~~~~~v~~~Pti~ 181 (319)
++.|+++||++|+...+.+.++. . .+.+.+..+|.+.+. .+.+.+++.++|+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i--~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--V--KPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--C--CCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 47899999999999999999886 2 124677777766433 366778999999974
No 262
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.17 E-value=6.7e-06 Score=70.07 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=65.7
Q ss_pred cceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCC-----cccC-
Q 020926 2 FLNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP-----KKYE- 75 (319)
Q Consensus 2 ~~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~-----~~y~- 75 (319)
..|+|+||-|.++.|+.+...|..||..|.. +.|++|....-+ ++..|.+...||+++|++|.... ....
T Consensus 147 ~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g 222 (265)
T PF02114_consen 147 TWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLG 222 (265)
T ss_dssp -EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-
T ss_pred cEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccC-cccCCcccCCCEEEEEECCEEEEeEEehHHhcC
Confidence 3689999999999999999999999999965 999999987765 78899999999999999886321 1121
Q ss_pred CCCChHHHHHHHHhcCC
Q 020926 76 GPRSTEALAEYVNNEGG 92 (319)
Q Consensus 76 g~~~~~~i~~~i~~~~~ 92 (319)
...+..+|..|+.+..-
T Consensus 223 ~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 223 DDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp TT--HHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 24678889999987643
No 263
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.7e-05 Score=60.23 Aligned_cols=85 Identities=15% Similarity=0.283 Sum_probs=64.4
Q ss_pred ceEEEEEcCCChhhhhhhHHHH---HHHHHhhcCCceEEEEEeccc----------------chhhhhhcCCCcCCeEEe
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYE---KLGASFKKAKSVLIGKVDCDE----------------HKSLCSKYGVQGYPTIQW 63 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~---~~a~~~~~~~~v~~~~vd~~~----------------~~~l~~~~~i~~~Pt~~~ 63 (319)
+.+++|-++.|+.|.++...+. ++.+.+. +.+.++.+|... ..+|++.|+|+++||+++
T Consensus 44 ylllmfes~~C~yC~~~KKd~~~~krlrEylk--~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvF 121 (182)
T COG2143 44 YLLLMFESNGCSYCERFKKDLKNVKRLREYLK--EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVF 121 (182)
T ss_pred EEEEEEcCCCChHHHHHHHhhcchHHHHHHHh--hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEE
Confidence 4689999999999999988763 3334443 246777777541 248999999999999999
Q ss_pred ccCCCCCCcccCCCCChHHHHHHHHh
Q 020926 64 FPKGSLEPKKYEGPRSTEALAEYVNN 89 (319)
Q Consensus 64 ~~~~~~~~~~y~g~~~~~~i~~~i~~ 89 (319)
|+..+.......|...++.+..-+.-
T Consensus 122 fdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 122 FDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred EcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 99887666677799988887655443
No 264
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.13 E-value=1e-05 Score=67.92 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=63.3
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc---------chhhhhhcCCCcCCeEEeccCCCCCCcc
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------HKSLCSKYGVQGYPTIQWFPKGSLEPKK 73 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~---------~~~l~~~~~i~~~Pt~~~~~~~~~~~~~ 73 (319)
+.++.||.+.|++|+.+.|++..+++.+.- .|..+.+|..- +...++++||..+|++++...+......
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 468999999999999999999999999832 35555555422 3446789999999999999877533222
Q ss_pred c-CCCCChHHHHHHHHh
Q 020926 74 Y-EGPRSTEALAEYVNN 89 (319)
Q Consensus 74 y-~g~~~~~~i~~~i~~ 89 (319)
. .|..+.++|.+=+..
T Consensus 223 v~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 223 LSYGFITQDDLAKRFLN 239 (248)
T ss_pred EeeccCCHHHHHHHHHH
Confidence 2 388899988765544
No 265
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.13 E-value=1.1e-05 Score=62.40 Aligned_cols=45 Identities=27% Similarity=0.384 Sum_probs=37.8
Q ss_pred CCCcEEEEEECCCCcc-ccchHHHHHHHHHHhcCCC--CeEEEEEeCc
Q 020926 119 KSKDVLVEFYAPWCGH-CKNLAPTYEKVAAAFTLED--DVVVANLDAD 163 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~-C~~~~~~~~~la~~~~~~~--~~~~~~vd~~ 163 (319)
.+++++|.||++||++ |....+.+.++..++..++ ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5789999999999998 9999999999999997542 5777777654
No 266
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.10 E-value=8.6e-06 Score=63.52 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=34.8
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK 47 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~ 47 (319)
+++.|+++||++|+...|.+.++.+++.. ..+.++.|+.+...
T Consensus 27 vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~~ 69 (149)
T cd02970 27 VVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESPE 69 (149)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCHH
Confidence 45555699999999999999999999965 35888888877543
No 267
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.10 E-value=1.4e-05 Score=63.77 Aligned_cols=51 Identities=14% Similarity=0.311 Sum_probs=38.3
Q ss_pred ceEEEEEcCC-ChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc---chhhhhhcCCC
Q 020926 3 LNAFCVKCDR-CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---HKSLCSKYGVQ 56 (319)
Q Consensus 3 ~~~v~Fya~~-C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~---~~~l~~~~~i~ 56 (319)
.++|.||+.| |++|....|.+.++++.+. ++.++.|+++. ...+++++++.
T Consensus 46 ~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 46 RKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADLPFAQKRFCGAEGLE 100 (167)
T ss_pred EEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCCHHHHHHHHHhCCCC
Confidence 3789999999 9999999999999999883 47777777763 23344444443
No 268
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.08 E-value=4.6e-05 Score=62.72 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=65.7
Q ss_pred CCCcEE-EEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc---------------------------cchhhHh
Q 020926 119 KSKDVL-VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------------KYKDLAE 170 (319)
Q Consensus 119 ~~~~v~-v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~---------------------------~~~~l~~ 170 (319)
.++.++ +.|+++||+.|....+.|.++..+|+.. ++.+..|.++ .+..+++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 355554 4689999999999999999999988643 3444444333 2236777
Q ss_pred hcCCc------cccEEEEEeCCCcCeeec----CCCCCHHHHHHHHHHhh
Q 020926 171 KYGVS------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEKC 210 (319)
Q Consensus 171 ~~~v~------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~~ 210 (319)
.||+. .+|+.+++.++++..... .++++.+++...|+...
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 88884 589999998776644332 55689999999998764
No 269
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.08 E-value=3e-05 Score=62.51 Aligned_cols=118 Identities=14% Similarity=0.278 Sum_probs=69.8
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc-----------chhhhh-hcCCCcCCeEEeccCCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-----------HKSLCS-KYGVQGYPTIQWFPKGSLE 70 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~-----------~~~l~~-~~~i~~~Pt~~~~~~~~~~ 70 (319)
.++|.|||+||+.|++ .|.++++.+.|.+. .+.++.+.|.. -..+|+ ++++. ||.+.=.+-++
T Consensus 27 vvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~dvnG-- 101 (183)
T PRK10606 27 VLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKIEVNG-- 101 (183)
T ss_pred EEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEEccCC--
Confidence 3789999999999975 88999999999763 59999998842 134565 67763 67553333222
Q ss_pred CcccCCCCChHHHHHHHHhcCCCCccc------------cCCCCceEEcCccChHHHhhcCCCcEEEEEECCCCcc
Q 020926 71 PKKYEGPRSTEALAEYVNNEGGTNVKI------------AAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGH 134 (319)
Q Consensus 71 ~~~y~g~~~~~~i~~~i~~~~~~~~~~------------~~~~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~ 134 (319)
..+..+-+|+.......... ...|..... -.-||.+++.+.+. .+|..|.|...|
T Consensus 102 -------~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-i~WNF~KFLv~~~G-~vv~r~~~~~~p 168 (183)
T PRK10606 102 -------EGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDD-ILWNFEKFLVGRDG-QVIQRFSPDMTP 168 (183)
T ss_pred -------CCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCc-ccccCEEEEECCCC-cEEEEECCCCCC
Confidence 22345666776543211000 000111111 23568888755554 555666665544
No 270
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.07 E-value=6.5e-06 Score=62.37 Aligned_cols=65 Identities=25% Similarity=0.464 Sum_probs=44.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhc---CCCcCCeEEeccCCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKY---GVQGYPTIQWFPKGSLE 70 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~~~~~~~~ 70 (319)
+.++-|..+|||.|....|.+.++++..+ .+.+--+.-++++++..+| |...+|++++++.++..
T Consensus 43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~ 110 (129)
T PF14595_consen 43 YNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKE 110 (129)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--E
T ss_pred cEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCE
Confidence 35778899999999999999999999853 3666666667777766654 68899999999776533
No 271
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.06 E-value=4.7e-05 Score=61.72 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=66.6
Q ss_pred CCCcEEEEEE-CCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc-------------------------cchhhHhhc
Q 020926 119 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-------------------------KYKDLAEKY 172 (319)
Q Consensus 119 ~~~~v~v~F~-~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~-------------------------~~~~l~~~~ 172 (319)
.++.+++.|| +.||+.|....+.|.++..+|... ++.+..|+.+ .+..+++.|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 4678999999 999999999999999999998643 3444444433 233678889
Q ss_pred CC----ccc--cEEEEEeCCCcCeeec----CCCCCHHHHHHHHHHhh
Q 020926 173 GV----SGF--PTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEKC 210 (319)
Q Consensus 173 ~v----~~~--Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~~ 210 (319)
|+ .+. |+.+++.++++....+ ...++.+++...|...-
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 98 355 9999998776644333 23478999999886543
No 272
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.06 E-value=1.7e-05 Score=64.49 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=60.1
Q ss_pred ceEEEEE-cCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc-------------------------chhhhhhcCCC
Q 020926 3 LNAFCVK-CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------------------------HKSLCSKYGVQ 56 (319)
Q Consensus 3 ~~~v~Fy-a~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~i~ 56 (319)
.++|.|| +.||++|....|.+.++.+.+.+. .+.++.|.++. +..+++.|++.
T Consensus 33 ~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~ 111 (187)
T TIGR03137 33 WSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVL 111 (187)
T ss_pred EEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCc
Confidence 3789999 999999999999999999998753 35566665442 23567788876
Q ss_pred ------cCCeEEeccCCCCCCcccC----CCCChHHHHHHHHh
Q 020926 57 ------GYPTIQWFPKGSLEPKKYE----GPRSTEALAEYVNN 89 (319)
Q Consensus 57 ------~~Pt~~~~~~~~~~~~~y~----g~~~~~~i~~~i~~ 89 (319)
..|+.++++..+.....+. ..+..+++.+.++.
T Consensus 112 ~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 112 IEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred ccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 3588888876554333221 23577777777654
No 273
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=4.2e-05 Score=64.85 Aligned_cols=115 Identities=17% Similarity=0.367 Sum_probs=89.8
Q ss_pred CCCceEEcCccChHHHhhcCCC--cEEEEEECC----CCccccchHHHHHHHHHHhcCCC------CeEEEEEeCccchh
Q 020926 100 VPSNVVVLTADNFDEIVLDKSK--DVLVEFYAP----WCGHCKNLAPTYEKVAAAFTLED------DVVVANLDADKYKD 167 (319)
Q Consensus 100 ~~~~v~~l~~~~f~~~~~~~~~--~v~v~F~~~----wC~~C~~~~~~~~~la~~~~~~~------~~~~~~vd~~~~~~ 167 (319)
.++.|+.++++.|.+++....+ ..+|.|.|. .|.-|++....+.-+|+.++.+. .+-|..||.++.++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 4567999999999999964433 477888874 89999999999999999875431 57899999999999
Q ss_pred hHhhcCCccccEEEEEeCCCc---CeeecC---CCCCHHHHHHHHHHhhCCCC
Q 020926 168 LAEKYGVSGFPTLKFFPKGNK---DGEEYG---GGRDLEDFVSFINEKCGTSR 214 (319)
Q Consensus 168 l~~~~~v~~~Pti~~~~~g~~---~~~~~~---g~~~~~~l~~~i~~~~~~~~ 214 (319)
+.+++++++.|++++|.+... ....+. -+..+|++.+|+.+.+....
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 999999999999999954322 222222 12459999999998876543
No 274
>PRK15000 peroxidase; Provisional
Probab=98.06 E-value=3.7e-05 Score=63.14 Aligned_cols=90 Identities=13% Similarity=0.302 Sum_probs=67.1
Q ss_pred CCCcEEEEEECC-CCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc----------------------------chhhH
Q 020926 119 KSKDVLVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA 169 (319)
Q Consensus 119 ~~~~v~v~F~~~-wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~----------------------------~~~l~ 169 (319)
.++.+++.||+. ||+.|....+.|.+++.+|+.. ++.+..|.++. +..++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 578999999995 9999999999999999999744 45555555441 12566
Q ss_pred hhcCCc------cccEEEEEeCCCcCeeecCC----CCCHHHHHHHHHHh
Q 020926 170 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK 209 (319)
Q Consensus 170 ~~~~v~------~~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~ 209 (319)
+.||+. ..|+.+++.++++....+.| +++.++++..|+..
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 678887 68999999877665444443 47888888888653
No 275
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.05 E-value=3.3e-05 Score=60.29 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=33.8
Q ss_pred CcEEEEEE-CCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc
Q 020926 121 KDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163 (319)
Q Consensus 121 ~~v~v~F~-~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~ 163 (319)
++++|.|| ++||+.|....|.+.++.+++.. .++.++.|..+
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d 71 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVD 71 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCC
Confidence 77888887 89999999999999999999864 35666665544
No 276
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.03 E-value=5.1e-05 Score=64.11 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=69.1
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc-----------hhhHhhcCCccccEEEEEeCCC
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------KDLAEKYGVSGFPTLKFFPKGN 187 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~-----------~~l~~~~~v~~~Pti~~~~~g~ 187 (319)
.++.-++.||.+-|+.|..+.|++..+++.+ ++.+..|++|.. ..+++++||..+|++++...+.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y----gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t 224 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY----GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS 224 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh----CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence 3568899999999999999999999999998 355555555533 4588999999999999998775
Q ss_pred cCee-ecCCCCCHHHHHHHHHHhh
Q 020926 188 KDGE-EYGGGRDLEDFVSFINEKC 210 (319)
Q Consensus 188 ~~~~-~~~g~~~~~~l~~~i~~~~ 210 (319)
.... .-.|..+.++|.+=|-..+
T Consensus 225 ~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 225 QKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CcEEEEeeccCCHHHHHHHHHHHH
Confidence 4333 3468888888877765544
No 277
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.02 E-value=3.7e-05 Score=59.64 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=35.1
Q ss_pred CCCcEEEEEECCC-CccccchHHHHHHHHHHhcCCCCeEEEEEeCc
Q 020926 119 KSKDVLVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163 (319)
Q Consensus 119 ~~~~v~v~F~~~w-C~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~ 163 (319)
.++++++.||+.| |++|+...|.+.++.+++. ++.++.|+.+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d 67 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISAD 67 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECC
Confidence 4679999999998 6999999999999999873 5666666664
No 278
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.01 E-value=7.3e-05 Score=55.12 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=71.0
Q ss_pred EcCccChHHHhhcCCCcEEEEEE-CC---CCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCcc----c
Q 020926 106 VLTADNFDEIVLDKSKDVLVEFY-AP---WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG----F 177 (319)
Q Consensus 106 ~l~~~~f~~~~~~~~~~v~v~F~-~~---wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~----~ 177 (319)
++|.++..... ..+.++.|+ .. --..-....+.+.++|+.++. +.+.|+.+|.++.....+.||++. +
T Consensus 3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~-gki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD-RKLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC-CeEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 45667776664 334444443 21 222345678899999999973 369999999998877899999984 9
Q ss_pred cEEEEEeCCCcCeeecCCCC-CHHHHHHHHHHh
Q 020926 178 PTLKFFPKGNKDGEEYGGGR-DLEDFVSFINEK 209 (319)
Q Consensus 178 Pti~~~~~g~~~~~~~~g~~-~~~~l~~~i~~~ 209 (319)
|++.++..++ ......+.. +.+.|.+|+++.
T Consensus 79 P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 9999987543 333356778 999999999864
No 279
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.99 E-value=4.8e-05 Score=53.30 Aligned_cols=77 Identities=26% Similarity=0.388 Sum_probs=55.5
Q ss_pred EEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc----hhhHhhcC--CccccEEEEEeCCCcCeeecCCC
Q 020926 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYG--VSGFPTLKFFPKGNKDGEEYGGG 196 (319)
Q Consensus 123 v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~----~~l~~~~~--v~~~Pti~~~~~g~~~~~~~~g~ 196 (319)
-++.|+.+||++|+.....++++...+ .++.+..+|++.+ .++.+..+ +.++|++++ +|. . .|
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~---~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~-~----ig- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER---DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQK-H----IG- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc---cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCE-E----Ec-
Confidence 478899999999999999999998764 3577777777643 35655555 478999753 441 1 22
Q ss_pred CCHHHHHHHHHHhhC
Q 020926 197 RDLEDFVSFINEKCG 211 (319)
Q Consensus 197 ~~~~~l~~~i~~~~~ 211 (319)
..+++.++++.+.+
T Consensus 71 -g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 -GCTDFEAYVKENLG 84 (85)
T ss_pred -CHHHHHHHHHHhcc
Confidence 46788888887654
No 280
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.99 E-value=3.8e-05 Score=59.21 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=35.9
Q ss_pred CCCcEEEEEE-CCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc
Q 020926 119 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163 (319)
Q Consensus 119 ~~~~v~v~F~-~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~ 163 (319)
.+++++|.|| +.||+.|....|.+.++..+++. .++.++.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 5788999999 78999999999999999999853 35666666554
No 281
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.98 E-value=1.5e-05 Score=61.75 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=36.1
Q ss_pred ceEEEEEcCCChh-hhhhhHHHHHHHHHhhcCC--ceEEEEEeccc
Q 020926 3 LNAFCVKCDRCGH-CKKLAPEYEKLGASFKKAK--SVLIGKVDCDE 45 (319)
Q Consensus 3 ~~~v~Fya~~C~~-C~~~~p~~~~~a~~~~~~~--~v~~~~vd~~~ 45 (319)
.++|.||++||++ |....+.+.++.+.+...+ ++.++.|..+.
T Consensus 24 ~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 24 PVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred EEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4789999999997 9999999999999997642 58888887653
No 282
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.97 E-value=2.3e-05 Score=61.78 Aligned_cols=88 Identities=25% Similarity=0.345 Sum_probs=73.4
Q ss_pred ceEEcC-ccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEE
Q 020926 103 NVVVLT-ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 181 (319)
Q Consensus 103 ~v~~l~-~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~ 181 (319)
...++. ...|-..+ ..+.-|++.||-|.-..|+-+...++.+|..+ -...|++||++..+=++.+++|..+|++.
T Consensus 67 ~y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h---~eTrFikvnae~~PFlv~kL~IkVLP~v~ 142 (211)
T KOG1672|consen 67 EYEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH---VETRFIKVNAEKAPFLVTKLNIKVLPTVA 142 (211)
T ss_pred eEEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhc---ccceEEEEecccCceeeeeeeeeEeeeEE
Confidence 345554 66677766 56677999999999999999999999999987 46789999999999999999999999999
Q ss_pred EEeCCCcCeeecCC
Q 020926 182 FFPKGNKDGEEYGG 195 (319)
Q Consensus 182 ~~~~g~~~~~~~~g 195 (319)
+|.+|. ....+.|
T Consensus 143 l~k~g~-~~D~iVG 155 (211)
T KOG1672|consen 143 LFKNGK-TVDYVVG 155 (211)
T ss_pred EEEcCE-EEEEEee
Confidence 999884 4444444
No 283
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.97 E-value=1.9e-05 Score=55.36 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=54.3
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch----hhhhhcC--CCcCCeEEeccCCCCCCcccCCC
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----SLCSKYG--VQGYPTIQWFPKGSLEPKKYEGP 77 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~Pt~~~~~~~~~~~~~y~g~ 77 (319)
-++.|+.+||++|++....++++...+. .+.+..+|.+++. ++....+ +..+|++++ +|.. .
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~----i--- 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKH----I--- 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEE----E---
Confidence 4788999999999999999999987653 4778888887642 4544444 578999753 5532 1
Q ss_pred CChHHHHHHHHhcC
Q 020926 78 RSTEALAEYVNNEG 91 (319)
Q Consensus 78 ~~~~~i~~~i~~~~ 91 (319)
-..++|.+++....
T Consensus 70 gg~~~~~~~~~~~~ 83 (85)
T PRK11200 70 GGCTDFEAYVKENL 83 (85)
T ss_pred cCHHHHHHHHHHhc
Confidence 24577777776654
No 284
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.94 E-value=6.2e-05 Score=55.05 Aligned_cols=77 Identities=22% Similarity=0.489 Sum_probs=58.2
Q ss_pred hhhHHHHHHH-HHhhcCCceEEEEEecc-----cchhhhhhcCC--CcCCeEEeccCCCCCCccc--CCCCChHHHHHHH
Q 020926 18 KLAPEYEKLG-ASFKKAKSVLIGKVDCD-----EHKSLCSKYGV--QGYPTIQWFPKGSLEPKKY--EGPRSTEALAEYV 87 (319)
Q Consensus 18 ~~~p~~~~~a-~~~~~~~~v~~~~vd~~-----~~~~l~~~~~i--~~~Pt~~~~~~~~~~~~~y--~g~~~~~~i~~~i 87 (319)
.-...|.++| +......++.+|.|-.. +|.+|+++|+| ..||.+.+|..+...+.+| .|..+.++|..|+
T Consensus 36 eKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fv 115 (126)
T PF07912_consen 36 EKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFV 115 (126)
T ss_dssp HHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHH
Confidence 4456788888 55544567999999874 67899999999 5799999999777778888 8999999999999
Q ss_pred HhcCCCC
Q 020926 88 NNEGGTN 94 (319)
Q Consensus 88 ~~~~~~~ 94 (319)
..+++.-
T Consensus 116 k~~t~~y 122 (126)
T PF07912_consen 116 KSNTGLY 122 (126)
T ss_dssp HHTSS--
T ss_pred HhCCCee
Confidence 9987643
No 285
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.93 E-value=3e-05 Score=57.66 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=62.6
Q ss_pred ceEEEEEcC----CChhhhhhhHHHHHHHHHhhcCCceEEEEEecc--cchhhhhhcCCCcCCeEEecc---CCCCCCcc
Q 020926 3 LNAFCVKCD----RCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD--EHKSLCSKYGVQGYPTIQWFP---KGSLEPKK 73 (319)
Q Consensus 3 ~~~v~Fya~----~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~---~~~~~~~~ 73 (319)
+++|++|+| ||..|+..... .++.+-++ .++.+...|++ +...++..+++++||++.++. +......+
T Consensus 19 ~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 19 FLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred EEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEE
Confidence 579999999 89999765421 33333332 24788888886 457899999999999999983 22223467
Q ss_pred cCCCCChHHHHHHHHhc
Q 020926 74 YEGPRSTEALAEYVNNE 90 (319)
Q Consensus 74 y~g~~~~~~i~~~i~~~ 90 (319)
..|..+++++...+...
T Consensus 96 i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 96 LEGLIQPEDLINRLTFI 112 (116)
T ss_pred EeCCCCHHHHHHHHHHH
Confidence 78999999999888764
No 286
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.93 E-value=3.1e-05 Score=63.75 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=60.9
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc---------------------------chhhhhhcCCC
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCSKYGVQ 56 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~i~ 56 (319)
+++.|+++||+.|....+.+.++.++++.. ++.++.|.++. +..+++.||+.
T Consensus 31 vL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~ 109 (202)
T PRK13190 31 LLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLI 109 (202)
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCc
Confidence 455789999999999999999999999753 35566655542 23567778874
Q ss_pred ------cCCeEEeccCCCCCCccc----CCCCChHHHHHHHHh
Q 020926 57 ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN 89 (319)
Q Consensus 57 ------~~Pt~~~~~~~~~~~~~y----~g~~~~~~i~~~i~~ 89 (319)
.+|+.+++++++...... .+.++.+++...++.
T Consensus 110 ~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~ 152 (202)
T PRK13190 110 DENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKA 152 (202)
T ss_pred cccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 478888887766432211 355788888887765
No 287
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.92 E-value=4.3e-05 Score=59.66 Aligned_cols=41 Identities=10% Similarity=-0.007 Sum_probs=33.3
Q ss_pred eEEEEE-cCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc
Q 020926 4 NAFCVK-CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 45 (319)
Q Consensus 4 ~~v~Fy-a~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~ 45 (319)
++|.|| ++||+.|....|.+.++++.+.+ .++.++.|+.+.
T Consensus 31 ~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d~ 72 (149)
T cd03018 31 VVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVDS 72 (149)
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCCC
Confidence 456666 99999999999999999999975 357787777653
No 288
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.92 E-value=4.4e-05 Score=60.04 Aligned_cols=42 Identities=17% Similarity=0.068 Sum_probs=33.6
Q ss_pred ceEEEEEcC-CChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc
Q 020926 3 LNAFCVKCD-RCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 45 (319)
Q Consensus 3 ~~~v~Fya~-~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~ 45 (319)
.++|.||+. ||+.|....+.+.++.+.+.+. ++.++.|+.+.
T Consensus 32 ~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~ 74 (154)
T PRK09437 32 RVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDK 74 (154)
T ss_pred CEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 368889975 7888999999999999998763 47778777653
No 289
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.91 E-value=4.1e-05 Score=51.55 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=37.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhc----CCCcCCeEEe
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKY----GVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~----~i~~~Pt~~~ 63 (319)
++.|+++||++|+++.+.+.+. .+.+..+|.+.+....+.+ ++.++|++.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE
Confidence 6789999999999988877652 2556677777655444433 6889999976
No 290
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.89 E-value=3.4e-05 Score=52.01 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=44.0
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhc----CCccccEEEEEeCCCcCeeecCCCCCH
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY----GVSGFPTLKFFPKGNKDGEEYGGGRDL 199 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~----~v~~~Pti~~~~~g~~~~~~~~g~~~~ 199 (319)
++.|+++||++|..+.+.+.+. ++.+..++++.+....+.+ ++.++|++++ +| .... +.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~----~~i~-g~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD----EHLS-GFRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC----EEEe-cCCH
Confidence 5789999999999988887763 3555666666554444333 6889999875 23 2223 3455
Q ss_pred HHHHHH
Q 020926 200 EDFVSF 205 (319)
Q Consensus 200 ~~l~~~ 205 (319)
+.|.++
T Consensus 67 ~~l~~~ 72 (73)
T cd02976 67 DKLRAL 72 (73)
T ss_pred HHHHhh
Confidence 566554
No 291
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.86 E-value=0.00017 Score=60.65 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=66.5
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc-----------chhhHhhcCCccccEEEEEeCCC
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------YKDLAEKYGVSGFPTLKFFPKGN 187 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~-----------~~~l~~~~~v~~~Pti~~~~~g~ 187 (319)
.+..-++.||.+-|++|..+.|++..+++.+. +.+..|++|. +...++++||..+|++++...+.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg----~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG----LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKS 217 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCC
Confidence 35688999999999999999999999999983 4454444431 23467799999999999998775
Q ss_pred cCee-ecCCCCCHHHHHHHHHHh
Q 020926 188 KDGE-EYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 188 ~~~~-~~~g~~~~~~l~~~i~~~ 209 (319)
.... .-.|..+.++|.+=|...
T Consensus 218 ~~~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 218 GSVRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred CcEEEEeeccCCHHHHHHHHHHH
Confidence 4333 346788888887766544
No 292
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.84 E-value=0.00016 Score=59.66 Aligned_cols=89 Identities=17% Similarity=0.261 Sum_probs=63.3
Q ss_pred cEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc---------------------------chhhHhhcCC
Q 020926 122 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAEKYGV 174 (319)
Q Consensus 122 ~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~---------------------------~~~l~~~~~v 174 (319)
.+++.|+++||+.|....+.+.+++.+|+.. ++.++.|.++. +..+++.||+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence 4566899999999999999999999999743 45555555442 2357778887
Q ss_pred c----c----ccEEEEEeCCCcCeeecCC----CCCHHHHHHHHHHhhC
Q 020926 175 S----G----FPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEKCG 211 (319)
Q Consensus 175 ~----~----~Pti~~~~~g~~~~~~~~g----~~~~~~l~~~i~~~~~ 211 (319)
. + .|+.+++.++++....+.+ +++.+++...|...-.
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~ 155 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQL 155 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 5 2 3567888777665444333 5788899988876543
No 293
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.81 E-value=0.00011 Score=59.48 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=62.3
Q ss_pred ceEEEEE-cCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc-------------------------chhhhhhcCC-
Q 020926 3 LNAFCVK-CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------------------------HKSLCSKYGV- 55 (319)
Q Consensus 3 ~~~v~Fy-a~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~i- 55 (319)
.++|.|| +.||+.|....+.+.+..+++... ++.++.|..+. +..+++.||+
T Consensus 33 ~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~ 111 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNM 111 (187)
T ss_pred eEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCC
Confidence 3688999 999999999999999999999753 36666666542 3467788888
Q ss_pred ---CcC--CeEEeccCCCCCCccc----CCCCChHHHHHHHHh
Q 020926 56 ---QGY--PTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN 89 (319)
Q Consensus 56 ---~~~--Pt~~~~~~~~~~~~~y----~g~~~~~~i~~~i~~ 89 (319)
.+. |+.+++++++.....+ ...++.+++.+.+..
T Consensus 112 ~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 112 REDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred cccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 355 8888888666432222 234688888888765
No 294
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.80 E-value=6.9e-05 Score=62.97 Aligned_cols=83 Identities=23% Similarity=0.400 Sum_probs=59.8
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEE----------------------------------------
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA---------------------------------------- 158 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~---------------------------------------- 158 (319)
+++.+++.|+.+.||+|+++.+.+.++.+. .-.+.+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 467889999999999999999988876431 0011111
Q ss_pred --EEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHh
Q 020926 159 --NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 159 --~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 209 (319)
..+++.+..+++++||++.||++ +.+| ....|..+.++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G----~~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNG----TLVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCC----eEeeCCCCHHHHHHHHHHc
Confidence 11112334789999999999998 5555 3458999999999999853
No 295
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.79 E-value=9.3e-05 Score=61.03 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=59.5
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc---------------------------chhhhhhcCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCSKYGV 55 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~i 55 (319)
.+++.|+++||+.|....+.+.+++++++.. ++.++.|+++. +..+++.||+
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence 4567899999999999999999999999763 46777776553 2356777887
Q ss_pred C----cC----CeEEeccCCCCCCcccC----CCCChHHHHHHHHh
Q 020926 56 Q----GY----PTIQWFPKGSLEPKKYE----GPRSTEALAEYVNN 89 (319)
Q Consensus 56 ~----~~----Pt~~~~~~~~~~~~~y~----g~~~~~~i~~~i~~ 89 (319)
. +. |+.+++++++.....+. ..++.+++.+.++.
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 5 22 45677776654322222 24677788777765
No 296
>PRK13189 peroxiredoxin; Provisional
Probab=97.79 E-value=0.00019 Score=59.97 Aligned_cols=91 Identities=16% Similarity=0.211 Sum_probs=64.3
Q ss_pred CCC-cEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc---------------------------chhhHh
Q 020926 119 KSK-DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE 170 (319)
Q Consensus 119 ~~~-~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~---------------------------~~~l~~ 170 (319)
.++ .+++.|+++||+.|....+.|.+++.+|+.. ++.++.|.++. ...+++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~ 112 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK 112 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence 355 4556788999999999999999999999643 45554444431 225777
Q ss_pred hcCCc-------cccEEEEEeCCCcCeeec----CCCCCHHHHHHHHHHhh
Q 020926 171 KYGVS-------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEKC 210 (319)
Q Consensus 171 ~~~v~-------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~~ 210 (319)
.||+. ..|+.+++++++...... ..+++.+++...|....
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 88875 468899998776643332 25678899999987654
No 297
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.78 E-value=2.6e-05 Score=61.51 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=59.4
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCC
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~ 69 (319)
|+++||-|.-..|+-+-.+++.+|..+-+ ..|++||+...|=++.+++|.-.|++.+|.+|..
T Consensus 87 VVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~ 149 (211)
T KOG1672|consen 87 VVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKT 149 (211)
T ss_pred EEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeEEEEEcCEE
Confidence 78999999999999999999999999854 8899999999999999999999999999999974
No 298
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.0004 Score=50.75 Aligned_cols=100 Identities=21% Similarity=0.400 Sum_probs=74.4
Q ss_pred ccChHHHhh-cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCC
Q 020926 109 ADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN 187 (319)
Q Consensus 109 ~~~f~~~~~-~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~ 187 (319)
....+..+. ...+.+++-|.-+|-+.|..+...+.+++.... .-..++-+|+++-+++.+-|++...||+.+|-++.
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs--nfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVS--NFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHh--hceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 344555553 346889999999999999999999999999885 24577788999999999999999999999987764
Q ss_pred cCeeecC-CC--------CCHHHHHHHHHHhh
Q 020926 188 KDGEEYG-GG--------RDLEDFVSFINEKC 210 (319)
Q Consensus 188 ~~~~~~~-g~--------~~~~~l~~~i~~~~ 210 (319)
.....+. |. .+.+++.+.+.-..
T Consensus 89 HmkiD~gtgdn~Kin~~~~~kq~~Idiie~iy 120 (142)
T KOG3414|consen 89 HMKIDLGTGDNNKINFAFEDKQEFIDIIETIY 120 (142)
T ss_pred eEEEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence 4333332 21 34566666665444
No 299
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.77 E-value=0.00033 Score=58.15 Aligned_cols=89 Identities=13% Similarity=0.180 Sum_probs=64.8
Q ss_pred CCc-EEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc---------------------------chhhHhh
Q 020926 120 SKD-VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAEK 171 (319)
Q Consensus 120 ~~~-v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~---------------------------~~~l~~~ 171 (319)
++. +++.|++.||+.|....+.|.++..+|+.. ++.++.+.++. +..+++.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 444 568999999999999999999999999643 45555555442 2256778
Q ss_pred cCCc-------cccEEEEEeCCCcCeeec----CCCCCHHHHHHHHHHh
Q 020926 172 YGVS-------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK 209 (319)
Q Consensus 172 ~~v~-------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~ 209 (319)
||+. ..|+.+++.++++....+ ..+++.+++...|...
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 579999998776643332 2347889999988764
No 300
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00017 Score=61.30 Aligned_cols=95 Identities=17% Similarity=0.340 Sum_probs=75.2
Q ss_pred cceEEEEEc----CCChhhhhhhHHHHHHHHHhhcC----C--ceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCC
Q 020926 2 FLNAFCVKC----DRCGHCKKLAPEYEKLGASFKKA----K--SVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP 71 (319)
Q Consensus 2 ~~~~v~Fya----~~C~~C~~~~p~~~~~a~~~~~~----~--~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~ 71 (319)
+.++|+|.| ..|.-|+....+|.-+|..+... + ++-|..||.++.+++.+.++++..|++.+|.+.....
T Consensus 61 ys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~ 140 (331)
T KOG2603|consen 61 YSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGNK 140 (331)
T ss_pred eEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhcccCCCeEEEeCCCcccc
Confidence 457888887 68999999999999999887542 1 6899999999999999999999999999996543221
Q ss_pred c---cc---CCCCChHHHHHHHHhcCCCCcc
Q 020926 72 K---KY---EGPRSTEALAEYVNNEGGTNVK 96 (319)
Q Consensus 72 ~---~y---~g~~~~~~i~~~i~~~~~~~~~ 96 (319)
. .+ .-...++++.+|+++.+.....
T Consensus 141 ~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 141 KRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred ccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 1 11 1123599999999998776554
No 301
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.76 E-value=7.3e-05 Score=71.36 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=64.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHH
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALA 84 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~ 84 (319)
+-.|.+++|++|.+....+++++.+.. +|..-.||..+.++++++|+|.++|++++ ++. ..+.|..+.++|.
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~---~~~~G~~~~~~~~ 551 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ---QVYFGKKTIEEML 551 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC---CceEEEEECcccHHHHHhCCceecCEEEE--CCE---EEEeeCCCHHHHH
Confidence 445789999999999999999998853 49999999999999999999999999876 443 4566888999998
Q ss_pred HHH
Q 020926 85 EYV 87 (319)
Q Consensus 85 ~~i 87 (319)
+|+
T Consensus 552 ~~~ 554 (555)
T TIGR03143 552 ELI 554 (555)
T ss_pred Hhh
Confidence 886
No 302
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.75 E-value=7.2e-05 Score=55.40 Aligned_cols=67 Identities=19% Similarity=0.454 Sum_probs=43.7
Q ss_pred cCCCcEEEEEECC-------CCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc-------chhhHh--hcCCccccEEE
Q 020926 118 DKSKDVLVEFYAP-------WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------YKDLAE--KYGVSGFPTLK 181 (319)
Q Consensus 118 ~~~~~v~v~F~~~-------wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~-------~~~l~~--~~~v~~~Pti~ 181 (319)
..+++++|.|+++ |||.|....|.+++.-.... .+..++.+.+.. +..+.. +++++++||++
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~--~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi 94 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP--ENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLI 94 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S--TTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEE
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC--CCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEE
Confidence 3568899999864 99999999999998777743 356666555532 123444 58999999999
Q ss_pred EEeCC
Q 020926 182 FFPKG 186 (319)
Q Consensus 182 ~~~~g 186 (319)
-+..+
T Consensus 95 ~~~~~ 99 (119)
T PF06110_consen 95 RWETG 99 (119)
T ss_dssp ECTSS
T ss_pred EECCC
Confidence 98655
No 303
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.75 E-value=0.00031 Score=59.72 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=64.8
Q ss_pred CCCcEEEEEE-CCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc----------------------------chhhH
Q 020926 119 KSKDVLVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA 169 (319)
Q Consensus 119 ~~~~v~v~F~-~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~----------------------------~~~l~ 169 (319)
.++.+++.|| +.||+.|....+.|.++..+|+.. ++.+..|.+|. +..++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 4567777777 899999999999999999998643 34444444332 23678
Q ss_pred hhcCCc-----cccEEEEEeCCCcCeeec----CCCCCHHHHHHHHHHh
Q 020926 170 EKYGVS-----GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK 209 (319)
Q Consensus 170 ~~~~v~-----~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~ 209 (319)
+.||+. ..|+.++++++++....+ ..+++.+++...|...
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 889985 479999998776644433 3457888888888654
No 304
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.74 E-value=0.00011 Score=51.56 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=52.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc----hhhhhhcC--CCcCCeEEeccCCCCCCcccCCCC
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----KSLCSKYG--VQGYPTIQWFPKGSLEPKKYEGPR 78 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~--i~~~Pt~~~~~~~~~~~~~y~g~~ 78 (319)
++.|+.+|||+|++....++++..... .+.+..+|.+.+ .++....+ +..+|++.+ +|.. . -
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~----i---g 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH----V---G 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE----e---c
Confidence 567889999999999999988765432 366777777643 34555666 378999843 4431 1 2
Q ss_pred ChHHHHHHHHhcCC
Q 020926 79 STEALAEYVNNEGG 92 (319)
Q Consensus 79 ~~~~i~~~i~~~~~ 92 (319)
..++|.+++.+..+
T Consensus 70 G~~dl~~~~~~~~~ 83 (86)
T TIGR02183 70 GCTDFEQLVKENFD 83 (86)
T ss_pred CHHHHHHHHHhccc
Confidence 35788888877544
No 305
>PRK15000 peroxidase; Provisional
Probab=97.73 E-value=0.00011 Score=60.36 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=59.7
Q ss_pred ceEEEEEc-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc----------------------------chhhhhhc
Q 020926 3 LNAFCVKC-DRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLCSKY 53 (319)
Q Consensus 3 ~~~v~Fya-~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~~~~ 53 (319)
.++|.||+ +||+.|....+.+.+.++++... ++.++.|.++. +..+++.|
T Consensus 36 ~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~y 114 (200)
T PRK15000 36 TTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAY 114 (200)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHc
Confidence 47899999 59999999999999999999764 46666666652 12455667
Q ss_pred CCC------cCCeEEeccCCCCCCcccC----CCCChHHHHHHHHh
Q 020926 54 GVQ------GYPTIQWFPKGSLEPKKYE----GPRSTEALAEYVNN 89 (319)
Q Consensus 54 ~i~------~~Pt~~~~~~~~~~~~~y~----g~~~~~~i~~~i~~ 89 (319)
++. ..|+.+++++.+.....+. -.++.+++.+.++.
T Consensus 115 gv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 115 GIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred CCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 776 5777777776554322222 23577777776654
No 306
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=2.5e-05 Score=63.25 Aligned_cols=79 Identities=20% Similarity=0.428 Sum_probs=67.2
Q ss_pred cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCC
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 197 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~ 197 (319)
...+..++.||++||.+|+.+...+..++..+ .++.+++++.+..++++..+.+...|.+.++..|. ...+..|..
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~---~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~-~v~~l~~~~ 90 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF---KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGE-KVDRLSGAD 90 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh---hhheeeeehhhhhhHHHHHHHHhcCceeeeeecch-hhhhhhccC
Confidence 47788999999999999999999999999988 57999999999999999999999999999997663 444455544
Q ss_pred CHH
Q 020926 198 DLE 200 (319)
Q Consensus 198 ~~~ 200 (319)
...
T Consensus 91 ~~~ 93 (227)
T KOG0911|consen 91 PPF 93 (227)
T ss_pred cHH
Confidence 433
No 307
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.71 E-value=7.8e-05 Score=57.78 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=41.7
Q ss_pred ceEEEEEcCC-ChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc---hhhhhhcCCCcCC
Q 020926 3 LNAFCVKCDR-CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH---KSLCSKYGVQGYP 59 (319)
Q Consensus 3 ~~~v~Fya~~-C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~P 59 (319)
.++|.||+.| |++|+...|.+.++.++++ ++.++.|+.+.. ..+.+++++..+|
T Consensus 28 ~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~~~~~~~~~~~~~~~~~~ 85 (143)
T cd03014 28 VKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADLPFAQKRWCGAEGVDNVT 85 (143)
T ss_pred eEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCCHHHHHHHHHhcCCCCce
Confidence 3789999998 6999999999999999874 488888888653 3444556654555
No 308
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.70 E-value=0.00011 Score=57.30 Aligned_cols=65 Identities=15% Similarity=0.364 Sum_probs=45.6
Q ss_pred ceEEEEEcCCChhhhhhhH-HH--HHHHHHhhcCCceEEEEEecccchhhhhhc--------CCCcCCeEEeccCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAP-EY--EKLGASFKKAKSVLIGKVDCDEHKSLCSKY--------GVQGYPTIQWFPKGSL 69 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p-~~--~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~~Pt~~~~~~~~~ 69 (319)
++||.++.+||..|+.|.. .| .++++.++. .+.-++||.++.+++...| |..|+|+.+++.+.+.
T Consensus 39 pIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 39 PIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGK 114 (163)
T ss_dssp -EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-
T ss_pred cEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCC
Confidence 6899999999999999986 34 456666643 5888999999999998888 7889999999987663
No 309
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.69 E-value=0.00014 Score=68.92 Aligned_cols=81 Identities=10% Similarity=0.139 Sum_probs=69.3
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHH
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 83 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i 83 (319)
.+..|++++|++|......+++++... +.|..-.||..+.++++.+|+|.++|++++ ++. ..+.|..+.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~---~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~---~~~~g~~~~~~~ 190 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLN---PNITHTMIDGALFQDEVEARNIMAVPTVFL--NGE---EFGQGRMTLEEI 190 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhC---CCceEEEEEchhCHhHHHhcCCcccCEEEE--CCc---EEEecCCCHHHH
Confidence 467899999999999999999999864 359999999999999999999999999865 443 457798999999
Q ss_pred HHHHHhcCC
Q 020926 84 AEYVNNEGG 92 (319)
Q Consensus 84 ~~~i~~~~~ 92 (319)
.+.+....+
T Consensus 191 ~~~~~~~~~ 199 (517)
T PRK15317 191 LAKLDTGAA 199 (517)
T ss_pred HHHHhcccc
Confidence 998887544
No 310
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.69 E-value=0.00016 Score=58.30 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=55.2
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc--------c---hhhHh-hcCCccccEEEEEeCC
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------Y---KDLAE-KYGVSGFPTLKFFPKG 186 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~--------~---~~l~~-~~~v~~~Pti~~~~~g 186 (319)
.+++++|.|||+||++|++ .|.++++.+.|+.. ++.+..+.|++ . ..+++ +|++ .||.+-=..-
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~-~Fpv~~k~dv- 99 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGV-TFPMFSKIEV- 99 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeeccccccCCCCCHHHHHHHHHHccCC-CceeEEEEcc-
Confidence 4789999999999999974 88999999999753 68888887742 1 23454 5776 3664322221
Q ss_pred CcCeeecCCCCCHHHHHHHHHHhhC
Q 020926 187 NKDGEEYGGGRDLEDFVSFINEKCG 211 (319)
Q Consensus 187 ~~~~~~~~g~~~~~~l~~~i~~~~~ 211 (319)
. +.....+-+|++..++
T Consensus 100 -------n-G~~~~pl~~~Lk~~~~ 116 (183)
T PRK10606 100 -------N-GEGRHPLYQKLIAAAP 116 (183)
T ss_pred -------C-CCCCCHHHHHHHHhCC
Confidence 2 2234567788877664
No 311
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.67 E-value=0.00017 Score=46.79 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=38.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchh----hhhhcCCCcCCeEEe
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~ 63 (319)
++.|..+||++|++....|++. ++.+-.+|.+.+++ +.+..+..++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999998888432 37778888876643 333449999999876
No 312
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.67 E-value=0.0002 Score=53.13 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=41.5
Q ss_pred eEEEEEc-------CCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc-------hhhhh--hcCCCcCCeEEeccCC
Q 020926 4 NAFCVKC-------DRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-------KSLCS--KYGVQGYPTIQWFPKG 67 (319)
Q Consensus 4 ~~v~Fya-------~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~-------~~l~~--~~~i~~~Pt~~~~~~~ 67 (319)
++|.|++ +|||.|.+..|.+++.-..... +..++.|.+... ..+-+ .++++++||++-+..+
T Consensus 22 ~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 22 LFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp EEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS
T ss_pred EEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCC
Confidence 5778885 6999999999999988776432 577777776422 23333 5999999999999776
No 313
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.67 E-value=0.00035 Score=58.02 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=64.2
Q ss_pred CCCcEE-EEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc---------------------------chhhHh
Q 020926 119 KSKDVL-VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE 170 (319)
Q Consensus 119 ~~~~v~-v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~---------------------------~~~l~~ 170 (319)
.++.++ +.|+++||+.|....+.|.+++.+|+.. ++.++.++++. +..+++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 345444 5889999999999999999999999643 45555555441 125666
Q ss_pred hcCCc-------cccEEEEEeCCCcCeeec----CCCCCHHHHHHHHHHhh
Q 020926 171 KYGVS-------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEKC 210 (319)
Q Consensus 171 ~~~v~-------~~Pti~~~~~g~~~~~~~----~g~~~~~~l~~~i~~~~ 210 (319)
.||+- ..|+.+++.++++....+ ..+++.++++..|...-
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 77863 368899998776644432 23478999999987653
No 314
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.66 E-value=0.00015 Score=55.80 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=34.0
Q ss_pred eEEEEE-cCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc
Q 020926 4 NAFCVK-CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 45 (319)
Q Consensus 4 ~~v~Fy-a~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~ 45 (319)
++|.|| +.||+.|....|.+.++.+.++. ..+.++.|..+.
T Consensus 25 ~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~i~is~d~ 66 (140)
T cd02971 25 VVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEVLGVSVDS 66 (140)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 678888 78999999999999999999854 357777777653
No 315
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00016 Score=52.42 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=48.7
Q ss_pred eEEEEEc--------CCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc-------chhhhhhcCC-CcCCeEEeccCC
Q 020926 4 NAFCVKC--------DRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE-------HKSLCSKYGV-QGYPTIQWFPKG 67 (319)
Q Consensus 4 ~~v~Fya--------~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~-------~~~l~~~~~i-~~~Pt~~~~~~~ 67 (319)
++|.|++ ||||.|.+..|.+.+.-+... .++.|+.|++.+ +..+.+..++ .++||++=+.++
T Consensus 28 ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap--~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 28 IFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP--EDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQ 105 (128)
T ss_pred EEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC--CceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCc
Confidence 6788886 899999999999999888543 368999999864 2345566677 899999888753
No 316
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.64 E-value=0.00016 Score=46.90 Aligned_cols=51 Identities=24% Similarity=0.424 Sum_probs=38.6
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch----hhHhhcCCccccEEEE
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKF 182 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~----~l~~~~~v~~~Pti~~ 182 (319)
++.|+.+||++|+.....|++. ++.+..+|++..+ ++.+..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999998888544 4667777776553 3444459999999876
No 317
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.63 E-value=0.00012 Score=50.82 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=38.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc-----hhhhhhcCCCcCCeE
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-----KSLCSKYGVQGYPTI 61 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~Pt~ 61 (319)
++.|+++|||+|+.+.+.++++... +.+..+|.+.+ ..+.+..|+.++|++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK------PAVVELDQHEDGSEIQDYLQELTGQRTVPNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence 5789999999999999999987552 45666666544 234456788999997
No 318
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.61 E-value=0.00026 Score=58.15 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=54.6
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEE-----------------------------------------
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV----------------------------------------- 157 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~----------------------------------------- 157 (319)
..+..++.|+.+.|++|+++.+.+.+... +-.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~----~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPNAD----GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhccC----ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 36789999999999999999888765110 001111
Q ss_pred --EEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHH
Q 020926 158 --ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 158 --~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i 206 (319)
...+.+.+..+++++||++.|+++ +.+| ....|..+.++|.+||
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G----~~~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADG----RVVPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCC----eEecCCCCHHHHHhhC
Confidence 112222344788999999999997 6666 2367888888888764
No 319
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.60 E-value=0.0006 Score=48.87 Aligned_cols=78 Identities=21% Similarity=0.314 Sum_probs=61.4
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
.++|-|+.++|+ .....|.++|..+.+ .+.|+.+. ++++++++++. .|++.+|++.......|.|..+.++
T Consensus 19 ~~vvg~f~~~~~---~~~~~f~~~A~~~r~--~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~~~~y~g~~~~~~ 89 (97)
T cd02981 19 VVVVGFFKDEES---EEYKTFEKVAESLRD--DYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEEPVEYDGEFTEES 89 (97)
T ss_pred eEEEEEECCCCc---HHHHHHHHHHHhccc--CCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccCCccCCCCCCHHH
Confidence 367889999887 567789999998854 47887765 56778888875 5899999876545678999999999
Q ss_pred HHHHHHh
Q 020926 83 LAEYVNN 89 (319)
Q Consensus 83 i~~~i~~ 89 (319)
|.+|+..
T Consensus 90 l~~fi~~ 96 (97)
T cd02981 90 LVEFIKD 96 (97)
T ss_pred HHHHHHh
Confidence 9999974
No 320
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.59 E-value=0.00017 Score=60.63 Aligned_cols=77 Identities=22% Similarity=0.473 Sum_probs=56.4
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEE--e--------------------------------------c
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKV--D--------------------------------------C 43 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~v--d--------------------------------------~ 43 (319)
.++.|.-+.||+|+++.+.+.++.+. + |.+..+ . |
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~~~~----~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c 184 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDYNAL----G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC 184 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhcC----C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence 57899999999999999998876431 1 222111 1 1
Q ss_pred ----ccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHHHHHHhc
Q 020926 44 ----DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNE 90 (319)
Q Consensus 44 ----~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~ 90 (319)
.++..+++++||+++|+++ +.+|. ...|..+.+.|.+++...
T Consensus 185 ~~~v~~~~~la~~lgi~gTPtiv-~~~G~----~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 185 DVDIADHYALGVQFGVQGTPAIV-LSNGT----LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cchHHHhHHHHHHcCCccccEEE-EcCCe----EeeCCCCHHHHHHHHHHc
Confidence 1245788999999999998 55663 447889999999999854
No 321
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.59 E-value=0.00051 Score=52.20 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=62.9
Q ss_pred hhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCC--cCCeEEeccCCCCCCcc-cCCCCChHHHHHHHHhcCCC
Q 020926 17 KKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ--GYPTIQWFPKGSLEPKK-YEGPRSTEALAEYVNNEGGT 93 (319)
Q Consensus 17 ~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~~~~~~~~-y~g~~~~~~i~~~i~~~~~~ 93 (319)
..+...+.++|+.+++. .+.|+.+|.++...+.+.||+. ++|+++++...+. .+. +.|..+.++|.+|++.....
T Consensus 40 ~~~~~~l~~vAk~~kgk-~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 40 NKYLEILKSVAEKFKKK-PWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred HHHHHHHHHHHHHhcCC-cEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcC
Confidence 45677899999999652 3999999999998899999996 4999999987542 244 67999999999999997655
Q ss_pred Cc
Q 020926 94 NV 95 (319)
Q Consensus 94 ~~ 95 (319)
+.
T Consensus 118 kl 119 (130)
T cd02983 118 RG 119 (130)
T ss_pred Cc
Confidence 43
No 322
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.59 E-value=0.0003 Score=58.37 Aligned_cols=86 Identities=12% Similarity=0.145 Sum_probs=59.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc---------------------------chhhhhhcCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCSKYGV 55 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~i 55 (319)
.+++.|+++||+.|....+.+.++++++... ++.++.|.++. +..+++.||+
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~ 109 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGM 109 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCC
Confidence 3578899999999999999999999999764 46777777653 1245666776
Q ss_pred C-------cCCeEEeccCCCCCCc--ccC--CCCChHHHHHHHHh
Q 020926 56 Q-------GYPTIQWFPKGSLEPK--KYE--GPRSTEALAEYVNN 89 (319)
Q Consensus 56 ~-------~~Pt~~~~~~~~~~~~--~y~--g~~~~~~i~~~i~~ 89 (319)
. ..|+++++++.+.... .|. ..+..+++.+.++.
T Consensus 110 ~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 110 IHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred CccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 3 4677777776553321 121 23567777776654
No 323
>PRK13189 peroxiredoxin; Provisional
Probab=97.57 E-value=0.0003 Score=58.73 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=57.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc---------------------------chhhhhhcCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCSKYGV 55 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~i 55 (319)
.+++.|+++||+.|....+.|.+++++++.. ++.++.|.++. +..+++.||+
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv 116 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGM 116 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCC
Confidence 4566788999999999999999999999753 46666666542 2345666776
Q ss_pred C-------cCCeEEeccCCCCCCcc--c--CCCCChHHHHHHHHh
Q 020926 56 Q-------GYPTIQWFPKGSLEPKK--Y--EGPRSTEALAEYVNN 89 (319)
Q Consensus 56 ~-------~~Pt~~~~~~~~~~~~~--y--~g~~~~~~i~~~i~~ 89 (319)
. ..|+.+++++.+..... + ...++.+++...++.
T Consensus 117 ~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 117 ISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred CccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 4 35777777755533111 1 244567777777654
No 324
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.55 E-value=0.00039 Score=56.14 Aligned_cols=84 Identities=17% Similarity=0.280 Sum_probs=69.1
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCC--cCCeEEeccCCCCC-CcccCCCCCh
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ--GYPTIQWFPKGSLE-PKKYEGPRST 80 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~~~~~-~~~y~g~~~~ 80 (319)
+++.|+.........+...+.++|..+.+ .+.|+.+|++..+.+++.+|+. .+|+++++...... ...+.|..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~ 175 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITP 175 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCH
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCH
Confidence 67777777788899999999999999854 6999999999889999999998 89999999854422 1223789999
Q ss_pred HHHHHHHHh
Q 020926 81 EALAEYVNN 89 (319)
Q Consensus 81 ~~i~~~i~~ 89 (319)
++|.+|++.
T Consensus 176 ~~i~~Fl~d 184 (184)
T PF13848_consen 176 ESIEKFLND 184 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999999863
No 325
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.55 E-value=0.00013 Score=59.90 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=50.9
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEE-----------------------------------------
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKV----------------------------------------- 41 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~v----------------------------------------- 41 (319)
..++.|+.+.||+|+++.+.+.+. .+.-.+.+..+
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~~----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~ 154 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKPN----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASC 154 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhhc----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcccc
Confidence 357899999999999999988761 11001111111
Q ss_pred --ecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHHHHH
Q 020926 42 --DCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 87 (319)
Q Consensus 42 --d~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~~i 87 (319)
+.+++..+++++||+++|+++ |.+|. ...|..+.+.|.+++
T Consensus 155 ~~~i~~~~~l~~~~gi~gtPtii-~~~G~----~~~G~~~~~~l~~~L 197 (197)
T cd03020 155 DNPVAANLALGRQLGVNGTPTIV-LADGR----VVPGAPPAAQLEALL 197 (197)
T ss_pred CchHHHHHHHHHHcCCCcccEEE-ECCCe----EecCCCCHHHHHhhC
Confidence 111234788899999999997 66663 356888888887764
No 326
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.53 E-value=0.00078 Score=48.78 Aligned_cols=92 Identities=24% Similarity=0.317 Sum_probs=63.0
Q ss_pred ceEEcCccChHHHhhcCCCcEEEEEECCCC---ccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccE
Q 020926 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWC---GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 179 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC---~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt 179 (319)
....++.++++.++ ......+ .|.+.-| +.+....-++-++.+.|. +.+..+.++.+....+..+||+..+|+
T Consensus 10 g~~~vd~~~ld~~l-~~~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~--~~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 10 GWPRVDADTLDAFL-AAPGDAV-LFFAGDPARFPETADVAVILPELVKAFP--GRFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp TEEEE-CCCHHHHH-HCCSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTST--TSEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred CCeeechhhHHHHH-hCCCcEE-EEECCCCCcCcccccceeEcHHHHHhhh--CccceEEECchhHHHHHHHhCCccCCe
Confidence 46678899999998 4444444 4555434 445555558888888885 456777777677889999999999999
Q ss_pred EEEEeCCCcCeeecCCCCCH
Q 020926 180 LKFFPKGNKDGEEYGGGRDL 199 (319)
Q Consensus 180 i~~~~~g~~~~~~~~g~~~~ 199 (319)
++||++|. ......|-++.
T Consensus 86 Lvf~R~g~-~lG~i~gi~dW 104 (107)
T PF07449_consen 86 LVFFRDGR-YLGAIEGIRDW 104 (107)
T ss_dssp EEEEETTE-EEEEEESSSTH
T ss_pred EEEEECCE-EEEEecCeecc
Confidence 99999883 33334454443
No 327
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.53 E-value=0.00046 Score=58.72 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=60.8
Q ss_pred ceEEEEE-cCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc----------------------------chhhhhhc
Q 020926 3 LNAFCVK-CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----------------------------HKSLCSKY 53 (319)
Q Consensus 3 ~~~v~Fy-a~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~~~~ 53 (319)
.+++.|| +.||+.|....|.|.+..+++...+ +.++.|.++. +..+++.|
T Consensus 100 ~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g-v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakay 178 (261)
T PTZ00137 100 YGLLVFYPLDFTFVCPSELLGFSERLKEFEERG-VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSF 178 (261)
T ss_pred eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHc
Confidence 3567777 8999999999999999999997543 5555555442 23577888
Q ss_pred CCC-----cCCeEEeccCCCCCCccc----CCCCChHHHHHHHHh
Q 020926 54 GVQ-----GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN 89 (319)
Q Consensus 54 ~i~-----~~Pt~~~~~~~~~~~~~y----~g~~~~~~i~~~i~~ 89 (319)
|+. ..|+.+++++.+.....+ ...++.+++.+.++.
T Consensus 179 Gv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 179 GLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred CCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 885 478888888655432222 245688888877765
No 328
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.53 E-value=0.0002 Score=50.24 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=52.1
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc----chhhHhhcCC--ccccEEEEEeCCCcCeeecCCCC
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGV--SGFPTLKFFPKGNKDGEEYGGGR 197 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~----~~~l~~~~~v--~~~Pti~~~~~g~~~~~~~~g~~ 197 (319)
++.|+.+||++|.+....+.++...+ ..+.+..+|++. ..++.+.++- .++|++++ +|. +.|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~---~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~-----~ig-- 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER---ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEK-----HVG-- 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc---CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCE-----Eec--
Confidence 67899999999999999998886543 246676777663 2356666664 78999843 331 122
Q ss_pred CHHHHHHHHHHhhC
Q 020926 198 DLEDFVSFINEKCG 211 (319)
Q Consensus 198 ~~~~l~~~i~~~~~ 211 (319)
..++|.++++++.+
T Consensus 70 G~~dl~~~~~~~~~ 83 (86)
T TIGR02183 70 GCTDFEQLVKENFD 83 (86)
T ss_pred CHHHHHHHHHhccc
Confidence 35788888776543
No 329
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.50 E-value=0.00031 Score=48.64 Aligned_cols=51 Identities=24% Similarity=0.412 Sum_probs=38.5
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc-----hhhHhhcCCccccEE
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKYGVSGFPTL 180 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~-----~~l~~~~~v~~~Pti 180 (319)
++.|+++||++|+...+.+.++.. .+.+..++.+.+ ..+.+..|+.++|++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence 578999999999999999998754 345666665543 235556788899997
No 330
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.00055 Score=49.71 Aligned_cols=65 Identities=20% Similarity=0.463 Sum_probs=49.6
Q ss_pred CCCcEEEEEEC--------CCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc-------hhhHhhcCC-ccccEEEE
Q 020926 119 KSKDVLVEFYA--------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------KDLAEKYGV-SGFPTLKF 182 (319)
Q Consensus 119 ~~~~v~v~F~~--------~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~-------~~l~~~~~v-~~~Pti~~ 182 (319)
+++.++|+|++ +|||.|....|.+.+.-+... .++.|+.+++.+- ..+....++ +++||++=
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap--~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP--EDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLR 101 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC--CceEEEEEEecCCCcccCCCCccccCCCceeecceeeE
Confidence 44559999997 499999999999988877553 4678888876532 245666676 88999988
Q ss_pred EeC
Q 020926 183 FPK 185 (319)
Q Consensus 183 ~~~ 185 (319)
+.+
T Consensus 102 w~~ 104 (128)
T KOG3425|consen 102 WKR 104 (128)
T ss_pred EcC
Confidence 864
No 331
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.48 E-value=0.001 Score=54.65 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=63.3
Q ss_pred CCCcEEEEEEC-CCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc----------------------------chhhH
Q 020926 119 KSKDVLVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA 169 (319)
Q Consensus 119 ~~~~v~v~F~~-~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~----------------------------~~~l~ 169 (319)
.++.++|.||+ .||+.|....+.+.+++++|... ++.++.|+++. ...++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia 113 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA 113 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence 36788889995 78999999999999999998753 45555555441 12577
Q ss_pred hhcCCc------cccEEEEEeCCCcCeeecC----CCCCHHHHHHHHHHh
Q 020926 170 EKYGVS------GFPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINEK 209 (319)
Q Consensus 170 ~~~~v~------~~Pti~~~~~g~~~~~~~~----g~~~~~~l~~~i~~~ 209 (319)
+.||+. .+|+.++++++++....+. ..++.++++..|...
T Consensus 114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 788875 3688888887765433332 346777777777644
No 332
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.46 E-value=0.0022 Score=46.53 Aligned_cols=95 Identities=13% Similarity=0.233 Sum_probs=67.2
Q ss_pred EEc-CccChHHHhhc-CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEE
Q 020926 105 VVL-TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 105 ~~l-~~~~f~~~~~~-~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~ 182 (319)
..+ +.++++.++ . ....++|.|+..-- ......|.++|..++ .++.|+. ..++++...+++. .|++++
T Consensus 3 ~~i~~~~~~e~~~-~~~~~~~Vvg~f~~~~---~~~~~~F~~vA~~~R--~d~~F~~---~~~~~~~~~~~~~-~~~i~l 72 (102)
T cd03066 3 EIINSERELQAFE-NIEDDIKLIGYFKSED---SEHYKAFEEAAEEFH--PYIKFFA---TFDSKVAKKLGLK-MNEVDF 72 (102)
T ss_pred eEcCCHHHHHHHh-cccCCeEEEEEECCCC---CHHHHHHHHHHHhhh--cCCEEEE---ECcHHHHHHcCCC-CCcEEE
Confidence 344 445577777 5 56677777776632 245678999999986 3466655 3455677788775 799999
Q ss_pred EeCCCcCeeec-CCCCCHHHHHHHHHHh
Q 020926 183 FPKGNKDGEEY-GGGRDLEDFVSFINEK 209 (319)
Q Consensus 183 ~~~g~~~~~~~-~g~~~~~~l~~~i~~~ 209 (319)
+++.......| .|..+.+.|.+||..+
T Consensus 73 ~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 73 YEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred eCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 97744455668 7888999999999754
No 333
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.46 E-value=0.00092 Score=49.25 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=60.6
Q ss_pred ChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCc----CCeEEeccCCCCCCcccCCCC-ChHHHHHHH
Q 020926 13 CGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG----YPTIQWFPKGSLEPKKYEGPR-STEALAEYV 87 (319)
Q Consensus 13 C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~----~Pt~~~~~~~~~~~~~y~g~~-~~~~i~~~i 87 (319)
-..-..+.+.+.++|+.+++ +++.|+.+|.++.....+.||+.. .|++.++..++ ......+.. +.++|.+|+
T Consensus 30 ~~~~~~~~~~~~~vAk~fk~-gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~ 107 (111)
T cd03073 30 PKGTNYWRNRVLKVAKDFPD-RKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFL 107 (111)
T ss_pred hhHHHHHHHHHHHHHHHCcC-CeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCHHHHHHHH
Confidence 34456789999999999973 469999999998877889999984 99999987543 224456777 999999999
Q ss_pred Hhc
Q 020926 88 NNE 90 (319)
Q Consensus 88 ~~~ 90 (319)
+..
T Consensus 108 ~~f 110 (111)
T cd03073 108 EDF 110 (111)
T ss_pred HHh
Confidence 753
No 334
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.46 E-value=0.0012 Score=51.45 Aligned_cols=31 Identities=39% Similarity=0.662 Sum_probs=27.0
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHh
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAF 149 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~ 149 (319)
..+.+++.|+.++|++|+.+.|.+.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4578899999999999999999999877655
No 335
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.44 E-value=0.0017 Score=51.23 Aligned_cols=84 Identities=23% Similarity=0.391 Sum_probs=61.5
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc--cc-h-----------------------------
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KY-K----------------------------- 166 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~--~~-~----------------------------- 166 (319)
..+.+++.|+...|++|+.+.+.+.++-+.+-..+.+.+.....- .. .
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 457889999999999999999999999888854566776655442 00 0
Q ss_pred ------------------------------------hhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHH
Q 020926 167 ------------------------------------DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 208 (319)
Q Consensus 167 ------------------------------------~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~ 208 (319)
..+.+++|.+.||+++ +| ..+.|..+.+++.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG----~~~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NG----KYVVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TT----CEEETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CC----EEeCCCCCHHHHHHHHcC
Confidence 4556778999999887 44 235788899999888864
No 336
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.41 E-value=0.00052 Score=47.52 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=59.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCC-CcccCCCCChHHH
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE-PKKYEGPRSTEAL 83 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~-~~~y~g~~~~~~i 83 (319)
++.|..+.|+-|......+..+.... .+.+-.||.++++++..+|+. .+|.+.+=..+... .....+..+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence 57888999999999998888865543 489999999999999999996 69997765432211 2444567899999
Q ss_pred HHHHH
Q 020926 84 AEYVN 88 (319)
Q Consensus 84 ~~~i~ 88 (319)
.+|++
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98874
No 337
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.40 E-value=0.00037 Score=48.03 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=39.8
Q ss_pred CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc---hhhHhhcCCccccEEEE
Q 020926 120 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---KDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 120 ~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~---~~l~~~~~v~~~Pti~~ 182 (319)
.+.-++.|+.+||++|+.....|.+. ++.+-.+|++.+ ..+.+..|..++|++++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 45568899999999999999888754 344445565543 34555678899999854
No 338
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.39 E-value=0.00041 Score=48.06 Aligned_cols=79 Identities=27% Similarity=0.352 Sum_probs=59.8
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCc-CeeecCCCCCHHHH
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDF 202 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~-~~~~~~g~~~~~~l 202 (319)
++.|..+.|+-|......+.++... ..+.+-.||+++++.+.++|+. .+|.+.+-..++. ......+..+.+.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~----~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE----FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT----STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh----cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence 6889999999999999988886544 3589999999999999999996 6998665432111 23556777899999
Q ss_pred HHHHH
Q 020926 203 VSFIN 207 (319)
Q Consensus 203 ~~~i~ 207 (319)
.+||+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99874
No 339
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.37 E-value=0.00048 Score=46.47 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=45.1
Q ss_pred EEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhc---CCccccEEEEEeCCCcCeeecCCCCCHHH
Q 020926 125 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY---GVSGFPTLKFFPKGNKDGEEYGGGRDLED 201 (319)
Q Consensus 125 v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~---~v~~~Pti~~~~~g~~~~~~~~g~~~~~~ 201 (319)
..|+.++|++|+.....|.+. ++.+-.+|++.+++..+.+ |..++|++++ +|. ..-|+.+.+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~----~~~~G~~~~~ 67 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD----LSWSGFRPDK 67 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC----cEEeccCHHH
Confidence 578889999999998888753 5667777777666555544 7788999755 332 1344566666
Q ss_pred HHH
Q 020926 202 FVS 204 (319)
Q Consensus 202 l~~ 204 (319)
|.+
T Consensus 68 ~~~ 70 (72)
T TIGR02194 68 LKA 70 (72)
T ss_pred HHh
Confidence 554
No 340
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.33 E-value=0.0007 Score=56.24 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=59.7
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc---------------------------chhhhhhcCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---------------------------HKSLCSKYGV 55 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~i 55 (319)
++++.|+++||+.|....+.|.+++.++... ++.++.|+++. +..+++.||+
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv 114 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGM 114 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCC
Confidence 3556889999999999999999999999764 46677666652 2245667776
Q ss_pred C-------cCCeEEeccCCCCCCcc--c--CCCCChHHHHHHHHh
Q 020926 56 Q-------GYPTIQWFPKGSLEPKK--Y--EGPRSTEALAEYVNN 89 (319)
Q Consensus 56 ~-------~~Pt~~~~~~~~~~~~~--y--~g~~~~~~i~~~i~~ 89 (319)
. ..|+.+++++++..... | .-.++.+++...++.
T Consensus 115 ~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 115 IHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred cccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 3 35777777766543221 1 133678888877765
No 341
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.32 E-value=0.0025 Score=46.39 Aligned_cols=90 Identities=21% Similarity=0.342 Sum_probs=63.5
Q ss_pred ccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeC---
Q 020926 109 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK--- 185 (319)
Q Consensus 109 ~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~--- 185 (319)
.++.+.++ ...+.++|.|+..-- ......|.++|..++ .++.|+. ..+..+.+.+++ .|++++|++
T Consensus 8 ~~~l~~f~-~~~~~~Vvg~f~~~~---~~~~~~F~~vA~~~R--~d~~F~~---~~~~~~~~~~~~--~~~ivl~~p~~~ 76 (104)
T cd03069 8 EAEFEKFL-SDDDASVVGFFEDED---SKLLSEFLKAADTLR--ESFRFAH---TSDKQLLEKYGY--GEGVVLFRPPRL 76 (104)
T ss_pred HHHHHHHh-ccCCcEEEEEEcCCC---chHHHHHHHHHHhhh--hcCEEEE---EChHHHHHhcCC--CCceEEEechhh
Confidence 34456656 567777777776632 246778999999986 3567755 345567888988 688888843
Q ss_pred ---CCcCeeecCCCCCHHHHHHHHHHh
Q 020926 186 ---GNKDGEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 186 ---g~~~~~~~~g~~~~~~l~~~i~~~ 209 (319)
-......|.|..+.+.|.+||..+
T Consensus 77 ~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccccCcCCHHHHHHHHHhh
Confidence 223445699999999999999864
No 342
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.31 E-value=0.00091 Score=63.34 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=67.2
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHH
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEAL 83 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i 83 (319)
.+-.|+++.|++|......+.+++...+ .|..-.+|..+.++++.+|+|.++|++++ ++. ..+.|..+.+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~---~~~~g~~~~~~~ 191 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNP---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGE---EFHNGRMDLAEL 191 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCC---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCc---EEEecCCCHHHH
Confidence 3678999999999999999999988753 58899999999999999999999999876 443 457788898988
Q ss_pred HHHHHhc
Q 020926 84 AEYVNNE 90 (319)
Q Consensus 84 ~~~i~~~ 90 (319)
.+.+...
T Consensus 192 ~~~l~~~ 198 (515)
T TIGR03140 192 LEKLEET 198 (515)
T ss_pred HHHHhhc
Confidence 8887765
No 343
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.30 E-value=0.0006 Score=45.49 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=37.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchh----hhhhcCCCcCCeEEe
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~ 63 (319)
++.|+++||++|+...+.+.+.. +.+..+|...+.. +.+..+...+|++.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 57889999999999999888653 5667777776543 334457778888743
No 344
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.30 E-value=0.00064 Score=45.36 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=37.1
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchh----hHhhcCCccccEEEE
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLKF 182 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pti~~ 182 (319)
++.|+++||++|+.....+.+.. +.+..+|++.+.+ +.+..+..++|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 57899999999999999888763 5566677665443 344457778898743
No 345
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.001 Score=48.66 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=67.8
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccC-CC----
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYE-GP---- 77 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~-g~---- 77 (319)
+++|-|-.+|.+.|..+-..+..+++...+ -..+.-||.++-+++-+-|++...|++++|-++......+. |.
T Consensus 25 lvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD~gtgdn~Ki 102 (142)
T KOG3414|consen 25 LVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKIDLGTGDNNKI 102 (142)
T ss_pred EEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEeeCCCCCceE
Confidence 689999999999999999999999999865 47788889999999999999999999999977764444442 21
Q ss_pred ----CChHHHHHHHHh
Q 020926 78 ----RSTEALAEYVNN 89 (319)
Q Consensus 78 ----~~~~~i~~~i~~ 89 (319)
.+.+.+...++.
T Consensus 103 n~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 103 NFAFEDKQEFIDIIET 118 (142)
T ss_pred EEEeccHHHHHHHHHH
Confidence 255666665554
No 346
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.28 E-value=0.0018 Score=44.79 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=51.8
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhH---hhcCCccccEEEEEeCCCcCeeecCCCCCHH
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA---EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE 200 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~---~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~ 200 (319)
++.|+.+||++|......|++. ++.|-.+|++.+++.. ...|..++|+++. ++ ..-++.+.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-----~~~~Gf~~~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-----LSWSGFRPD 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-----EEEecCCHH
Confidence 6789999999999988888542 5677777887666533 3346778999865 22 124468889
Q ss_pred HHHHHHHHhh
Q 020926 201 DFVSFINEKC 210 (319)
Q Consensus 201 ~l~~~i~~~~ 210 (319)
.|.+++..+.
T Consensus 68 ~l~~~~~~~~ 77 (81)
T PRK10329 68 MINRLHPAPH 77 (81)
T ss_pred HHHHHHHhhh
Confidence 9998887654
No 347
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.26 E-value=0.0031 Score=49.72 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=32.6
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEec
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 43 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~ 43 (319)
..++.|+...||||.++.+.+.++.+.+-+.++|.+..++.
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 36899999999999999999999988874345677776664
No 348
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=97.25 E-value=0.00023 Score=60.51 Aligned_cols=124 Identities=20% Similarity=0.281 Sum_probs=90.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEec-ccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChH
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC-DEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 81 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~-~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~ 81 (319)
++-+.||++|||..+...|.++-....+.. +....|+- ..-+....+|++.+.|++.+.... -+.+|.|.++..
T Consensus 78 ~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t--~~~~~~~~r~l~ 152 (319)
T KOG2640|consen 78 YVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT--CPASYRGERDLA 152 (319)
T ss_pred cccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeeccc--cchhhcccccHH
Confidence 456789999999999999999988888752 43333332 244677899999999999887665 348899999999
Q ss_pred HHHHHHHhcCCCCccccCCCCceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHH
Q 020926 82 ALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAA 148 (319)
Q Consensus 82 ~i~~~i~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~ 148 (319)
+|++|..+.+.-.. .++. .+........+|.+||++-.-..|...-+...
T Consensus 153 sLv~fy~~i~~~~v----------~ie~-------~d~~~~~~~~ry~~~~~~t~l~~p~~~~~~~~ 202 (319)
T KOG2640|consen 153 SLVNFYTEITPMSV----------LIEI-------LDCTSCLEPVRYVPEGGPTILLAPDGNLFTWA 202 (319)
T ss_pred HHHHHHHhhccchh----------cccc-------cCcccceeeeEeccccCcccccCcCCCcchhc
Confidence 99999988754210 0110 02223788999999999877777665555444
No 349
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.23 E-value=0.00088 Score=45.18 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=45.1
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhc---CCCcCCeEEeccCCCCCCcccCCCCChHH
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKY---GVQGYPTIQWFPKGSLEPKKYEGPRSTEA 82 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~ 82 (319)
..|..++|++|++....|++. ++.+-.+|.++++.....+ |..++|++.+ +|. ..-|+.+.+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~----~~~~G~~~~~ 67 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD----LSWSGFRPDK 67 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC----cEEeccCHHH
Confidence 567789999999999888742 3777888888776555544 8888999755 332 1223455555
Q ss_pred HHH
Q 020926 83 LAE 85 (319)
Q Consensus 83 i~~ 85 (319)
|.+
T Consensus 68 ~~~ 70 (72)
T TIGR02194 68 LKA 70 (72)
T ss_pred HHh
Confidence 543
No 350
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.23 E-value=0.0008 Score=46.31 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=37.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc---hhhhhhcCCCcCCeEEe
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH---KSLCSKYGVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~Pt~~~ 63 (319)
++.|+.+||++|++....|++. ++.+-.+|++++ ..+....+...+|++.+
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 6789999999999999888642 255666777654 34555578899999854
No 351
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.20 E-value=0.00054 Score=47.10 Aligned_cols=51 Identities=14% Similarity=0.347 Sum_probs=35.5
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchh----hHhhcCCccccEEEE
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLKF 182 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pti~~ 182 (319)
++.|+.+||++|......|++. ++.+-.+|++.++. +.+..+..++|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3678999999999999988864 24445555554443 444457788999743
No 352
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.17 E-value=0.0037 Score=53.24 Aligned_cols=84 Identities=14% Similarity=0.277 Sum_probs=58.2
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEe-------------------------------------
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD------------------------------------- 161 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd------------------------------------- 161 (319)
+.+.+++.|+.+.|++|+++.+.+..+.+. +++.+..+-
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 456789999999999999998887665432 122221110
Q ss_pred ---------C----ccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHH
Q 020926 162 ---------A----DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 207 (319)
Q Consensus 162 ---------~----~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~ 207 (319)
| +.+..+.+++||++.|++++-+.++ .+....|..+.++|.+++.
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 0 0122577889999999998876432 4556789999999988864
No 353
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.16 E-value=0.00072 Score=48.77 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=34.2
Q ss_pred cEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc-h----hhHhhcCCccccEE
Q 020926 122 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-K----DLAEKYGVSGFPTL 180 (319)
Q Consensus 122 ~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~-~----~l~~~~~v~~~Pti 180 (319)
.-++.|..+|||+|.+....|.+..- .+....+|.+.. . .+.+..|..++|.+
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i------~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V 65 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGV------NPAVHEIDKEPAGKDIENALSRLGCSPAVPAV 65 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC------CCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE
Confidence 44788999999999999888876522 233444443211 2 23334467899997
No 354
>PHA03050 glutaredoxin; Provisional
Probab=97.12 E-value=0.00099 Score=48.79 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=38.4
Q ss_pred cEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc-cc----hhhHhhcCCccccEEEE
Q 020926 122 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KY----KDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 122 ~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~-~~----~~l~~~~~v~~~Pti~~ 182 (319)
.-++.|..+|||+|+.....|.+..-.. +.+....+|-. .. ..+.+..|.+++|++++
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 3478899999999999998888764322 13444444421 12 34556678889999844
No 355
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.08 E-value=0.004 Score=43.84 Aligned_cols=82 Identities=15% Similarity=0.345 Sum_probs=62.5
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc--chhhhhhcCCC----cCC-eEEeccCCCCCCcccCC
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE--HKSLCSKYGVQ----GYP-TIQWFPKGSLEPKKYEG 76 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~----~~P-t~~~~~~~~~~~~~y~g 76 (319)
|+|.|. ..-..-......+.++|+..++ .=.++.|||.. .+.||+++.|. .-| ++.-|++|.. ...|+.
T Consensus 22 VLvLy~-ks~k~a~~~Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~f-HkdYdR 97 (112)
T cd03067 22 VLVLYS-KSAKSAEALLKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDF-HTEYNR 97 (112)
T ss_pred EEEEEe-cchhhHHHHHHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCc-cccccc
Confidence 344444 4445555666689999999866 46789999986 78999999998 555 3666777774 489999
Q ss_pred CCChHHHHHHHHh
Q 020926 77 PRSTEALAEYVNN 89 (319)
Q Consensus 77 ~~~~~~i~~~i~~ 89 (319)
..+..+|.+|+..
T Consensus 98 ~~t~kSmv~FlrD 110 (112)
T cd03067 98 QLTFKSMVAFLRD 110 (112)
T ss_pred hhhHHHHHHHhhC
Confidence 9999999999975
No 356
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.08 E-value=0.0014 Score=44.51 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=35.6
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchh----hHhhcCCc-cccEEE
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVS-GFPTLK 181 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~-~~Pti~ 181 (319)
++.|+.+||++|......|.+. ++.+-.+|++.+++ +.+..+.. ++|+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 5789999999999998888763 35556666665543 33445766 899874
No 357
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.07 E-value=0.0015 Score=44.10 Aligned_cols=51 Identities=18% Similarity=0.364 Sum_probs=37.8
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch----hhHhhcCCccccEEEE
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKF 182 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~----~l~~~~~v~~~Pti~~ 182 (319)
++.|+.+||++|+.....|++. ++.+..+|++.++ ++.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 6789999999999998888864 4556666776554 4555567778998743
No 358
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.06 E-value=0.0011 Score=45.48 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=36.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhh----hhcCCCcCCeEEe
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC----SKYGVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~Pt~~~ 63 (319)
++.|..+||++|.+....|++. .+.+-.+|.+.++... +..+...+|++.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3568889999999999888753 2556666776664443 3447788999743
No 359
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.04 E-value=0.0018 Score=45.87 Aligned_cols=59 Identities=24% Similarity=0.184 Sum_probs=43.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecc--c------------------------------chhhhhh
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD--E------------------------------HKSLCSK 52 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~--~------------------------------~~~l~~~ 52 (319)
+..|+.+.|++|..+.+.+.++..... +++.+..+... . +...+.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD--GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC--CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 468999999999999999999975443 34555544432 1 1245678
Q ss_pred cCCCcCCeEEecc
Q 020926 53 YGVQGYPTIQWFP 65 (319)
Q Consensus 53 ~~i~~~Pt~~~~~ 65 (319)
.|+.++|++++..
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 8999999998865
No 360
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.02 E-value=0.0027 Score=52.21 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=56.7
Q ss_pred ceEEEEEc-CCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc----------------------------hhhhhhc
Q 020926 3 LNAFCVKC-DRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----------------------------KSLCSKY 53 (319)
Q Consensus 3 ~~~v~Fya-~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~----------------------------~~l~~~~ 53 (319)
.++|.||+ +||++|....+.+.++++++... ++.++.|+++.. .++++.|
T Consensus 38 ~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~y 116 (199)
T PTZ00253 38 WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSY 116 (199)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHHc
Confidence 36778995 88999999999999999999763 477777776522 2456677
Q ss_pred CCC------cCCeEEeccCCCCCCccc----CCCCChHHHHHHHHh
Q 020926 54 GVQ------GYPTIQWFPKGSLEPKKY----EGPRSTEALAEYVNN 89 (319)
Q Consensus 54 ~i~------~~Pt~~~~~~~~~~~~~y----~g~~~~~~i~~~i~~ 89 (319)
|+. .+|+.+++++.+...... .-.++.+++.+.+..
T Consensus 117 gv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a 162 (199)
T PTZ00253 117 GVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEA 162 (199)
T ss_pred CCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHh
Confidence 764 357777777655321111 123455666666554
No 361
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.97 E-value=0.0062 Score=44.88 Aligned_cols=75 Identities=13% Similarity=0.058 Sum_probs=61.0
Q ss_pred hhhhhhHHHHHHHHH---hhcCCceEEEEEecccchhhhhhcCCCc--CCeEEeccCCCCCCcc-cCCCCChHHHHHHHH
Q 020926 15 HCKKLAPEYEKLGAS---FKKAKSVLIGKVDCDEHKSLCSKYGVQG--YPTIQWFPKGSLEPKK-YEGPRSTEALAEYVN 88 (319)
Q Consensus 15 ~C~~~~p~~~~~a~~---~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt~~~~~~~~~~~~~-y~g~~~~~~i~~~i~ 88 (319)
.-..+.+.+.++|+. ++ +++.|+.+|.+......+.||+.. +|.+.+.......... +.+..+.++|.+|++
T Consensus 28 ~~~~~~~~~~~vAk~~~~~k--gki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~ 105 (111)
T cd03072 28 DLESLKEFKQAVARQLISEK--GAINFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVL 105 (111)
T ss_pred HHHHHHHHHHHHHHHHHhcC--ceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHH
Confidence 347788999999999 75 469999999998877899999997 8999998764322344 568889999999998
Q ss_pred hcC
Q 020926 89 NEG 91 (319)
Q Consensus 89 ~~~ 91 (319)
...
T Consensus 106 ~~~ 108 (111)
T cd03072 106 DLH 108 (111)
T ss_pred HHh
Confidence 754
No 362
>PHA03050 glutaredoxin; Provisional
Probab=96.97 E-value=0.0013 Score=48.21 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=36.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc---c----hhhhhhcCCCcCCeEEe
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE---H----KSLCSKYGVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~---~----~~l~~~~~i~~~Pt~~~ 63 (319)
++.|..+|||+|++....|++..-... .+..+|.++ + ..+.+.-|.+.+|++++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~-----~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG-----AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC-----CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 678999999999999988877643221 233444443 2 23555568889999844
No 363
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.96 E-value=0.008 Score=44.76 Aligned_cols=76 Identities=21% Similarity=0.391 Sum_probs=58.7
Q ss_pred ccChHHHhh-cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccE-EEEEeCC
Q 020926 109 ADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT-LKFFPKG 186 (319)
Q Consensus 109 ~~~f~~~~~-~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt-i~~~~~g 186 (319)
+...++.+. ...+.+++-|.-+|-+.|.++-..+.++|...+ .-..++.+|.++-+++.+-|.+. -|. +.||-++
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~--~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn 84 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK--NFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN 84 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh--cceEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence 345566553 467889999999999999999999999999885 35788899999999999999998 665 4455455
Q ss_pred C
Q 020926 187 N 187 (319)
Q Consensus 187 ~ 187 (319)
.
T Consensus 85 k 85 (133)
T PF02966_consen 85 K 85 (133)
T ss_dssp E
T ss_pred e
Confidence 3
No 364
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.95 E-value=0.0029 Score=42.85 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=36.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhh----hhcCCC-cCCeEE
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC----SKYGVQ-GYPTIQ 62 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~Pt~~ 62 (319)
++.|..+||++|.+....|++. ++.+..+|.+.+++.. +..+.. ++|++.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 5678889999999998888752 3666777777664433 335666 899874
No 365
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.94 E-value=0.0029 Score=42.69 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=38.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchh----hhhhcCCCcCCeEEe
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~ 63 (319)
++.|+.+||++|++....|++. .+.+..+|.++++. +.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5778899999999998888752 36677788877654 445557778899743
No 366
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.94 E-value=0.0039 Score=53.11 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=55.2
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEe----------------cc-----------------------
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVD----------------CD----------------------- 44 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd----------------~~----------------------- 44 (319)
+++.|.-+.||+|+++.+.+.++.+. ++|.+..+- |.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~ 195 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPA 195 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCccc
Confidence 57889999999999999887765442 223322111 00
Q ss_pred -----------cchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHHHHHH
Q 020926 45 -----------EHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVN 88 (319)
Q Consensus 45 -----------~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~~i~ 88 (319)
++..+++++||+++|++++-++.+ ......|..+.+.|.+.+.
T Consensus 196 ~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 196 SIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 123467789999999998876544 2245678889999988774
No 367
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.93 E-value=0.0019 Score=46.60 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=33.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch-------hhhhhcCCCcCCeEE
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-------SLCSKYGVQGYPTIQ 62 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~Pt~~ 62 (319)
++.|..||||+|.+....|++.. +.+..+|.++++ .+.+..|...+|++.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf 66 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG--------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF 66 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE
Confidence 67899999999999988776542 434455555432 233344678999973
No 368
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.89 E-value=0.0025 Score=42.92 Aligned_cols=66 Identities=17% Similarity=0.298 Sum_probs=42.7
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch---hhHhhcCCccccEEEEEeCCCcCeeecCCCCCHH
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE 200 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~---~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~ 200 (319)
++.|..+||++|......|.+. ++.+..+|++.+. .+....|..++|.++ -+|. +.| ..+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~-----~ig--g~~ 65 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGE-----LIG--GSD 65 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCE-----EEe--CHH
Confidence 6789999999999998888753 3445555655433 233445888999973 3341 122 256
Q ss_pred HHHHHH
Q 020926 201 DFVSFI 206 (319)
Q Consensus 201 ~l~~~i 206 (319)
++.+|+
T Consensus 66 ~l~~~l 71 (72)
T cd03029 66 DLEKYF 71 (72)
T ss_pred HHHHHh
Confidence 666664
No 369
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.87 E-value=0.0039 Score=43.07 Aligned_cols=71 Identities=8% Similarity=0.103 Sum_probs=49.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhh---hhcCCCcCCeEEeccCCCCCCcccCCCCChH
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC---SKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 81 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~---~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~ 81 (319)
+..|..+||++|++....|++ ..|.+-.+|.+++++.. +..|...+|++.+ ++. . -++.+.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~--------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~----~-~~Gf~~~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES--------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL----S-WSGFRPD 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE----E-EecCCHH
Confidence 567888999999998877754 23788888888776543 3457788999865 332 1 1356777
Q ss_pred HHHHHHHhc
Q 020926 82 ALAEYVNNE 90 (319)
Q Consensus 82 ~i~~~i~~~ 90 (319)
.|.+++...
T Consensus 68 ~l~~~~~~~ 76 (81)
T PRK10329 68 MINRLHPAP 76 (81)
T ss_pred HHHHHHHhh
Confidence 887776543
No 370
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0036 Score=43.11 Aligned_cols=51 Identities=18% Similarity=0.375 Sum_probs=35.6
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch-----hhHhhc-CCccccEEEE
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----DLAEKY-GVSGFPTLKF 182 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~-----~l~~~~-~v~~~Pti~~ 182 (319)
++.|..++||+|......|.+. ++.+..++.+..+ +..++- |.+++|+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 6789999999999988887743 4555555544333 344444 7889999766
No 371
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.64 E-value=0.0057 Score=41.11 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=43.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch---hhhhhcCCCcCCeEEeccCCCCCCcccCCCCChH
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK---SLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTE 81 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~ 81 (319)
++.|..+||++|.+....+++. ++.+-.+|.+++. .+....|...+|++. .+|.. . | ..+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~----i-g--g~~ 65 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGEL----I-G--GSD 65 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEE----E-e--CHH
Confidence 6788999999999998777742 2556667766543 233345888999973 34431 1 2 366
Q ss_pred HHHHHH
Q 020926 82 ALAEYV 87 (319)
Q Consensus 82 ~i~~~i 87 (319)
+|.+|+
T Consensus 66 ~l~~~l 71 (72)
T cd03029 66 DLEKYF 71 (72)
T ss_pred HHHHHh
Confidence 777665
No 372
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.63 E-value=0.005 Score=43.58 Aligned_cols=59 Identities=32% Similarity=0.417 Sum_probs=42.4
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEe--Cccc------------------------------hhhHhh
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD--ADKY------------------------------KDLAEK 171 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd--~~~~------------------------------~~l~~~ 171 (319)
++.|+.+.|++|..+.+.+.++..... +++.+.... .... ..++.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD--GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC--CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 467999999999999999999875443 344444333 2221 245678
Q ss_pred cCCccccEEEEEe
Q 020926 172 YGVSGFPTLKFFP 184 (319)
Q Consensus 172 ~~v~~~Pti~~~~ 184 (319)
+|+.++||+++..
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 8999999998864
No 373
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.53 E-value=0.0084 Score=43.00 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=31.6
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch----hhHhhcCCccccEEEE
Q 020926 130 PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKF 182 (319)
Q Consensus 130 ~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~----~l~~~~~v~~~Pti~~ 182 (319)
||||+|......|.+. ++.+..+|++.++ .+.+..|..++|.+++
T Consensus 25 ~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 8999999998888775 3445566765544 3444567778998754
No 374
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.52 E-value=0.012 Score=41.47 Aligned_cols=95 Identities=20% Similarity=0.299 Sum_probs=68.8
Q ss_pred ccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc--chhhHhhcCCc----cccEEE-
Q 020926 109 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVS----GFPTLK- 181 (319)
Q Consensus 109 ~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~----~~Pti~- 181 (319)
..+|.+++ .....|+|.|..+--. -......+.++|...++ .-.++.|||.+ ...||+++.|. --|..+
T Consensus 9 ~KdfKKLL-RTr~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk 84 (112)
T cd03067 9 HKDFKKLL-RTRNNVLVLYSKSAKS-AEALLKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK 84 (112)
T ss_pred hHHHHHHH-hhcCcEEEEEecchhh-HHHHHHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence 45677777 6677899998876322 22334578888888864 45677888885 67899999998 455443
Q ss_pred EEeCCCcCeeecCCCCCHHHHHHHHHH
Q 020926 182 FFPKGNKDGEEYGGGRDLEDFVSFINE 208 (319)
Q Consensus 182 ~~~~g~~~~~~~~g~~~~~~l~~~i~~ 208 (319)
-|.+| .-...|.-..+...+++|+++
T Consensus 85 HYKdG-~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 85 HYKDG-DFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cccCC-CccccccchhhHHHHHHHhhC
Confidence 46666 456678888999999999874
No 375
>PRK10638 glutaredoxin 3; Provisional
Probab=96.51 E-value=0.006 Score=42.34 Aligned_cols=51 Identities=12% Similarity=0.267 Sum_probs=36.2
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch----hhHhhcCCccccEEEE
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKF 182 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~----~l~~~~~v~~~Pti~~ 182 (319)
++.|..+||++|+.....+++. ++.+..+|++.++ ++.+..+...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5688899999999998888864 3445556665443 3445557788998743
No 376
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0084 Score=41.29 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=36.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch-----hhhhhc-CCCcCCeEEe
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-----SLCSKY-GVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~i~~~Pt~~~ 63 (319)
++.|..++||+|.+....|.+. .+.+..+|.+.+. +..++- |.+.+|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5678889999999988777732 3666666665443 334444 7899999765
No 377
>PRK10638 glutaredoxin 3; Provisional
Probab=96.30 E-value=0.01 Score=41.13 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=36.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchh----hhhhcCCCcCCeEEe
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~ 63 (319)
++.|..+||++|++....+++. .+.+..+|++.+.+ +.+..+...+|++.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5677789999999998888753 25566777766543 344557788998744
No 378
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.18 E-value=0.017 Score=41.62 Aligned_cols=78 Identities=26% Similarity=0.374 Sum_probs=53.0
Q ss_pred CccChHHHhhc-CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc----hhhHhhcCCc-cccEEE
Q 020926 108 TADNFDEIVLD-KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVS-GFPTLK 181 (319)
Q Consensus 108 ~~~~f~~~~~~-~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~----~~l~~~~~v~-~~Pti~ 181 (319)
+.++++.++.. ..+++++.=.++.|+-.......|++....... .+.++.+|+-++ ..++++|||. .-|.++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence 45677777733 368888888999999988888888888877642 377777776644 4688899998 489999
Q ss_pred EEeCCC
Q 020926 182 FFPKGN 187 (319)
Q Consensus 182 ~~~~g~ 187 (319)
++++|.
T Consensus 84 li~~g~ 89 (105)
T PF11009_consen 84 LIKNGK 89 (105)
T ss_dssp EEETTE
T ss_pred EEECCE
Confidence 999984
No 379
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.17 E-value=0.024 Score=45.73 Aligned_cols=104 Identities=23% Similarity=0.363 Sum_probs=78.3
Q ss_pred CceEEc-CccChHHHhhcC--CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCcccc
Q 020926 102 SNVVVL-TADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 178 (319)
Q Consensus 102 ~~v~~l-~~~~f~~~~~~~--~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P 178 (319)
..|.++ ++.+|.+.+... .-.++|..|-+.-+-|..+...+.=||..| +.+.|+++-.+ +-....+|....+|
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey---P~vKFckikss-~~gas~~F~~n~lP 213 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY---PIVKFCKIKSS-NTGASDRFSLNVLP 213 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC---CceeEEEeeec-cccchhhhcccCCc
Confidence 457777 578888888332 346788999999999999999999999998 68999998755 44567899999999
Q ss_pred EEEEEeCCCcCe------eecCCCCCHHHHHHHHHHh
Q 020926 179 TLKFFPKGNKDG------EEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 179 ti~~~~~g~~~~------~~~~g~~~~~~l~~~i~~~ 209 (319)
++++|++|.-.. ..+.......++..|++..
T Consensus 214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999998874211 1123345667788888754
No 380
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.12 E-value=0.016 Score=40.94 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=30.6
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch----hhHhhcCCccccEEE
Q 020926 130 PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLK 181 (319)
Q Consensus 130 ~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~----~l~~~~~v~~~Pti~ 181 (319)
|||++|......|.+.. +.+..+|++.++ .+.+..|..++|+++
T Consensus 21 ~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf 68 (90)
T cd03028 21 PRCGFSRKVVQILNQLG--------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLY 68 (90)
T ss_pred CCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE
Confidence 79999999988887763 445555555444 344456778899973
No 381
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.07 E-value=0.041 Score=44.00 Aligned_cols=32 Identities=28% Similarity=0.582 Sum_probs=28.6
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhc
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFT 150 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~ 150 (319)
..+..++.|+...|++|+.+.+.+..+..++.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~ 45 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP 45 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC
Confidence 56789999999999999999999999888763
No 382
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=95.93 E-value=0.036 Score=41.36 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=51.8
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCC-eEEeccCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYP-TIQWFPKGS 68 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P-t~~~~~~~~ 68 (319)
+++|-|-.+|-+.|.++-..+.++++..++ -..+..||.++-+++.+.|.+. -| |+++|-+++
T Consensus 22 vvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk 85 (133)
T PF02966_consen 22 VVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK 85 (133)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence 578999999999999999999999999865 4788999999999999999998 67 466663443
No 383
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.87 E-value=0.019 Score=46.13 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=21.8
Q ss_pred EEECCCCccccchHHHHHHHHHHhcCC
Q 020926 126 EFYAPWCGHCKNLAPTYEKVAAAFTLE 152 (319)
Q Consensus 126 ~F~~~wC~~C~~~~~~~~~la~~~~~~ 152 (319)
.|..|+|+.|-...|.+.++...+...
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 689999999999999999999998643
No 384
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.80 E-value=0.027 Score=40.35 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=31.8
Q ss_pred CCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchh----hhhhcCCCcCCeEEe
Q 020926 11 DRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQW 63 (319)
Q Consensus 11 ~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~ 63 (319)
||||+|.+....|.+. .+.+..+|..+++. +.+..|-..+|++.+
T Consensus 25 ~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 8999999998888764 25566777766543 334456778899743
No 385
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.71 E-value=0.02 Score=44.49 Aligned_cols=36 Identities=36% Similarity=0.359 Sum_probs=28.0
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEE
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKV 41 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~v 41 (319)
..++.|+.++||+|+++.|.+.++...+ +++.+...
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~---~~~~~~~~ 42 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKED---PDVRVVFK 42 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHC---CCceEEEE
Confidence 4688999999999999999999887665 23544443
No 386
>PRK10824 glutaredoxin-4; Provisional
Probab=95.64 E-value=0.023 Score=41.91 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=29.0
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchh----hHhhcCCccccEEEE
Q 020926 130 PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLKF 182 (319)
Q Consensus 130 ~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pti~~ 182 (319)
||||+|+.....|.++.. .+..+|++.+++ +.+.-|.+.+|.+++
T Consensus 28 p~Cpyc~~ak~lL~~~~i--------~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 28 PSCGFSAQAVQALSACGE--------RFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred CCCchHHHHHHHHHHcCC--------CceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 699999999988887632 223344444433 333446778898755
No 387
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.59 E-value=0.15 Score=37.27 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=59.5
Q ss_pred ccChHHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCC--
Q 020926 109 ADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG-- 186 (319)
Q Consensus 109 ~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g-- 186 (319)
.++++.++......++|.|+..--+ .....|.++|..++. ++.|+. ..+..+..++++. .|++++|++.
T Consensus 8 ~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd--d~~F~~---t~~~~~~~~~~~~-~~~vvl~rp~~~ 78 (107)
T cd03068 8 LKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE--DYKFHH---TFDSEIFKSLKVS-PGQLVVFQPEKF 78 (107)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc--CCEEEE---EChHHHHHhcCCC-CCceEEECcHHH
Confidence 4456666533326777777766322 466789999999863 466755 3345677888885 5777777433
Q ss_pred ----CcCeeecCCC-CCHHH-HHHHHHHh
Q 020926 187 ----NKDGEEYGGG-RDLED-FVSFINEK 209 (319)
Q Consensus 187 ----~~~~~~~~g~-~~~~~-l~~~i~~~ 209 (319)
......|.|. .+.++ |..||+++
T Consensus 79 ~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 79 QSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred hhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 2245667877 56655 99999753
No 388
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.57 E-value=0.039 Score=38.91 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=31.3
Q ss_pred CCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchh----hhhhcCCCcCCeEE
Q 020926 11 DRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQGYPTIQ 62 (319)
Q Consensus 11 ~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~ 62 (319)
|||++|++....|++.. +.+..+|...+.+ +.+..|-..+|++.
T Consensus 21 ~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf 68 (90)
T cd03028 21 PRCGFSRKVVQILNQLG--------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLY 68 (90)
T ss_pred CCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE
Confidence 79999999888777642 5566677665543 34445778899973
No 389
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.42 E-value=0.1 Score=43.17 Aligned_cols=31 Identities=23% Similarity=0.680 Sum_probs=25.2
Q ss_pred CCcEEEEEECCCCccccchHHHH---HHHHHHhc
Q 020926 120 SKDVLVEFYAPWCGHCKNLAPTY---EKVAAAFT 150 (319)
Q Consensus 120 ~~~v~v~F~~~wC~~C~~~~~~~---~~la~~~~ 150 (319)
+++.+|.|+.-.|++|..+.+.+ ..+.+.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~ 70 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP 70 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCC
Confidence 46679999999999999998865 66666664
No 390
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.14 E-value=0.013 Score=50.19 Aligned_cols=88 Identities=23% Similarity=0.477 Sum_probs=69.3
Q ss_pred CCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc-cchhhHhhcCCccccEEEEEeCCCcCeeecCCCC
Q 020926 119 KSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 197 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~-~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~ 197 (319)
+..++-..||+.||+..+...|.++-....|. .+....++-. .-+....+|++.+.|++.+...- .+..|-|.+
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~---~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t--~~~~~~~~r 149 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS---SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT--CPASYRGER 149 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcc---ccccccHHHHhhcccchhccccccCCcceeeccc--cchhhcccc
Confidence 35678899999999999999998888877764 2322223311 34577889999999999998654 678899999
Q ss_pred CHHHHHHHHHHhhC
Q 020926 198 DLEDFVSFINEKCG 211 (319)
Q Consensus 198 ~~~~l~~~i~~~~~ 211 (319)
+...|.+|-.+.++
T Consensus 150 ~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 150 DLASLVNFYTEITP 163 (319)
T ss_pred cHHHHHHHHHhhcc
Confidence 99999999988875
No 391
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.14 E-value=0.055 Score=43.74 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=67.9
Q ss_pred cceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCC------cccC
Q 020926 2 FLNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEP------KKYE 75 (319)
Q Consensus 2 ~~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~------~~y~ 75 (319)
.+++|+.|-|.-+-|..+...+.=+|.+|+. +.|.++-... .....+|..+.+|++.+|++|.... ..+.
T Consensus 160 ~~i~VhIYEdgi~gcealn~~~~cLAAeyP~---vKFckikss~-~gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlg 235 (273)
T KOG3171|consen 160 TTIVVHIYEDGIKGCEALNSSLTCLAAEYPI---VKFCKIKSSN-TGASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLG 235 (273)
T ss_pred EEEEEEEecCCCchHHHHhhhHHHhhccCCc---eeEEEeeecc-ccchhhhcccCCceEEEeeCCchhHHHHHHHHHHh
Confidence 4689999999999999999999999999864 8898887654 4567899999999999999997431 1122
Q ss_pred CCCChHHHHHHHHhcC
Q 020926 76 GPRSTEALAEYVNNEG 91 (319)
Q Consensus 76 g~~~~~~i~~~i~~~~ 91 (319)
....+.++..|++...
T Consensus 236 edffa~dle~FL~e~g 251 (273)
T KOG3171|consen 236 EDFFAGDLESFLNEYG 251 (273)
T ss_pred hhhhhhhHHHHHHHcC
Confidence 3456677788887754
No 392
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.88 E-value=0.043 Score=50.30 Aligned_cols=52 Identities=10% Similarity=0.175 Sum_probs=37.2
Q ss_pred EEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchh---hHhh---------cCCccccEEEE
Q 020926 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD---LAEK---------YGVSGFPTLKF 182 (319)
Q Consensus 123 v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~---l~~~---------~~v~~~Pti~~ 182 (319)
.++.|+.+|||+|+.....|.+. ++.+..+|+++.+. +.++ .|..++|++++
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 37789999999999988877764 45666677765542 2222 46778999865
No 393
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.74 E-value=0.24 Score=39.75 Aligned_cols=102 Identities=22% Similarity=0.317 Sum_probs=74.4
Q ss_pred CCceEEcCccChHHHhhcC--CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCcccc
Q 020926 101 PSNVVVLTADNFDEIVLDK--SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP 178 (319)
Q Consensus 101 ~~~v~~l~~~~f~~~~~~~--~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P 178 (319)
-..|..+++..|-+-+... +-.|+|..|...-+.|.-+...+..+|..| +.+.|+++-.+.. ...|-=...|
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf---p~iKFVki~at~c---IpNYPe~nlP 163 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF---PQIKFVKIPATTC---IPNYPESNLP 163 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC---CcceEEecccccc---cCCCcccCCC
Confidence 4568888988887766443 456788899999999999999999999999 5788988776543 2345556789
Q ss_pred EEEEEeCCCc-----CeeecCCC-CCHHHHHHHHHH
Q 020926 179 TLKFFPKGNK-----DGEEYGGG-RDLEDFVSFINE 208 (319)
Q Consensus 179 ti~~~~~g~~-----~~~~~~g~-~~~~~l~~~i~~ 208 (319)
|+++|..|.- .+..+.|. .+.+++..++-+
T Consensus 164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 9999988742 11223333 467777777765
No 394
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=94.71 E-value=0.76 Score=33.02 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=75.0
Q ss_pred EcCccChHHHhh-cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhH----hhcCCc-cccE
Q 020926 106 VLTADNFDEIVL-DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA----EKYGVS-GFPT 179 (319)
Q Consensus 106 ~l~~~~f~~~~~-~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~----~~~~v~-~~Pt 179 (319)
.++.++...... .-....++.|--+--+.-.++.+.+.++|+.+..++++.++.||-++.+-+. +-|+|. +-|.
T Consensus 5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq 84 (120)
T cd03074 5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ 84 (120)
T ss_pred hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence 344444444441 2346788899988888899999999999999998999999999999877444 356666 3598
Q ss_pred EEEEeCCCcCeeec--CCC---CCHHHHHHHHHHh
Q 020926 180 LKFFPKGNKDGEEY--GGG---RDLEDFVSFINEK 209 (319)
Q Consensus 180 i~~~~~g~~~~~~~--~g~---~~~~~l~~~i~~~ 209 (319)
|-+..-.....+-+ .+. .++++|..||...
T Consensus 85 IGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 85 IGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred eeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 88876444433333 232 6889999998753
No 395
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=94.69 E-value=0.095 Score=42.09 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhhcC
Q 020926 7 CVKCDRCGHCKKLAPEYEKLGASFKKA 33 (319)
Q Consensus 7 ~Fya~~C~~C~~~~p~~~~~a~~~~~~ 33 (319)
.|.-|.|++|-.+.|.|.++...+...
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 589999999999999999999999653
No 396
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=94.63 E-value=0.63 Score=38.79 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=47.9
Q ss_pred cccCCCCceEEcCccCh---HHHhhcCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEE
Q 020926 96 KIAAVPSNVVVLTADNF---DEIVLDKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 158 (319)
Q Consensus 96 ~~~~~~~~v~~l~~~~f---~~~~~~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~ 158 (319)
+...+...|..+++++. .+.. ..++|.++.|.+--||+-..-.+.|.++++.|.+.-++.++
T Consensus 76 G~~APns~vv~l~g~~~~~ildf~-~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V 140 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDFA-KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV 140 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHhc-cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh
Confidence 33445677889988773 3333 67899999999999999999999999999999754444444
No 397
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.38 Score=46.07 Aligned_cols=85 Identities=20% Similarity=0.409 Sum_probs=65.4
Q ss_pred CCceEEcCccChHHHhhcCCCcEEEEEECCCCccccchHHH-H--HHHHHHhcCCCCeEEEEEeCccchhhHhhcC----
Q 020926 101 PSNVVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNLAPT-Y--EKVAAAFTLEDDVVVANLDADKYKDLAEKYG---- 173 (319)
Q Consensus 101 ~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~---- 173 (319)
|-+...-..+.|.+.. ..++|+++..-.+||..|.-|... | .++|..+ +.+++-++||.++-+++-+.|.
T Consensus 25 PV~W~pW~~eAf~~A~-~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~l--N~~FV~IKVDREERPDvD~~Ym~~~q 101 (667)
T COG1331 25 PVDWYPWGEEAFAKAK-EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAIL--NENFVPVKVDREERPDVDSLYMNASQ 101 (667)
T ss_pred CccccccCHHHHHHHH-HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHH--HhCceeeeEChhhccCHHHHHHHHHH
Confidence 3344456678888876 789999999999999999999652 2 4566666 3579999999998888777664
Q ss_pred ----CccccEEEEEeCCCc
Q 020926 174 ----VSGFPTLKFFPKGNK 188 (319)
Q Consensus 174 ----v~~~Pti~~~~~g~~ 188 (319)
-.+.|--+|..++++
T Consensus 102 ~~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 102 AITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred HhccCCCCceeEEECCCCc
Confidence 457999888877654
No 398
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.14 Score=37.07 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=37.4
Q ss_pred CcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch-hh----HhhcCCccccEEEE
Q 020926 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-DL----AEKYGVSGFPTLKF 182 (319)
Q Consensus 121 ~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~-~l----~~~~~v~~~Pti~~ 182 (319)
..-+|.|..+||+.|......|.. + .....+..+|-..+. ++ .+--+.+++|.+++
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~----~--~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSD----L--GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHh----C--CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 345678999999999998888877 2 235667777765332 33 22334568898655
No 399
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.38 E-value=0.19 Score=40.26 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=58.7
Q ss_pred cceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCC-----CcccCC
Q 020926 2 FLNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLE-----PKKYEG 76 (319)
Q Consensus 2 ~~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~-----~~~y~g 76 (319)
++|+|+.|...-+.|.-+...+..+|..|.. +.|+++-.+..- ..|-=...||+++|..|... +..+.|
T Consensus 112 vwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---iKFVki~at~cI---pNYPe~nlPTl~VY~~G~lk~q~igll~lgG 185 (240)
T KOG3170|consen 112 VWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---IKFVKIPATTCI---PNYPESNLPTLLVYHHGALKKQMIGLLELGG 185 (240)
T ss_pred cEEEEEeeccccHHHHHHHHHHHHHhhcCCc---ceEEeccccccc---CCCcccCCCeEEEeecchHHhheehhhhhcC
Confidence 5799999999999999999999999999976 666665443221 12444478999999888632 123344
Q ss_pred CC-ChHHHHHHHHhc
Q 020926 77 PR-STEALAEYVNNE 90 (319)
Q Consensus 77 ~~-~~~~i~~~i~~~ 90 (319)
.. +.+++..++-+.
T Consensus 186 ~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 186 MNLTMEDVEDFLVQA 200 (240)
T ss_pred CcCCHHHHHHHHHhc
Confidence 43 566666666654
No 400
>PRK10824 glutaredoxin-4; Provisional
Probab=94.35 E-value=0.095 Score=38.70 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=32.2
Q ss_pred EEEEEc-----CCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhh----hhcCCCcCCeEEe
Q 020926 5 AFCVKC-----DRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC----SKYGVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya-----~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~Pt~~~ 63 (319)
+|.|-. ||||+|++....|..+. +.+..+|.+.+.++. +.-|-..+|.+.+
T Consensus 17 Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 17 ILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred EEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 445554 69999999988887753 333445555554333 3346678888654
No 401
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=94.35 E-value=0.39 Score=34.77 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=52.5
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccC------CCCCCcccCCC
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPK------GSLEPKKYEGP 77 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~------~~~~~~~y~g~ 77 (319)
++|-|+..--+ .....|.++|..+.+ ...|+... +..+.+.+++ .|++++|++ -......|.|.
T Consensus 21 ~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~k~de~~~~y~g~ 90 (104)
T cd03069 21 SVVGFFEDEDS---KLLSEFLKAADTLRE--SFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSNKFEDSSVKFDGD 90 (104)
T ss_pred EEEEEEcCCCc---hHHHHHHHHHHhhhh--cCEEEEEC---hHHHHHhcCC--CCceEEEechhhhcccCcccccccCc
Confidence 45566655333 456688888888843 46776533 4567788888 688888843 22233568998
Q ss_pred CChHHHHHHHHhc
Q 020926 78 RSTEALAEYVNNE 90 (319)
Q Consensus 78 ~~~~~i~~~i~~~ 90 (319)
.+.+.|.+|+...
T Consensus 91 ~~~~~l~~fi~~~ 103 (104)
T cd03069 91 LDSSKIKKFIREN 103 (104)
T ss_pred CCHHHHHHHHHhh
Confidence 8999999999864
No 402
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=94.33 E-value=0.091 Score=38.13 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=44.8
Q ss_pred EEEEEcCCChhhhhhhH---HHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCC
Q 020926 5 AFCVKCDRCGHCKKLAP---EYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSL 69 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p---~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~ 69 (319)
.|.|.+..|..+..... ++=++.+.+.+ .+..+.|+-..+..+..+||+..+|++++|++|..
T Consensus 29 ~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~ 94 (107)
T PF07449_consen 29 AVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPALVFFRDGRY 94 (107)
T ss_dssp EEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEE
T ss_pred EEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCeEEEEECCEE
Confidence 34566655554444443 66667676644 57788888778899999999999999999999863
No 403
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=94.25 E-value=0.087 Score=48.36 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=37.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhh---hh---------cCCCcCCeEEe
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC---SK---------YGVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~---~~---------~~i~~~Pt~~~ 63 (319)
++.|..||||+|++....+++. +|.+-.+|.++++... ++ .|.+++|++.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999988777653 3677778887665321 12 46788999865
No 404
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.2 Score=36.22 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=35.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch-h----hhhhcCCCcCCeEEe
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK-S----LCSKYGVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~-~----l~~~~~i~~~Pt~~~ 63 (319)
+|.|..+||+.|.++...|.+ + .....++.+|-..+. + +.+--+-+.+|.+++
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~--~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----L--GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----C--CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 688999999999998777776 2 224567777766442 2 333334568888655
No 405
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=93.68 E-value=0.86 Score=32.79 Aligned_cols=78 Identities=14% Similarity=0.214 Sum_probs=53.5
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCccc-CCCCChHH
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKY-EGPRSTEA 82 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y-~g~~~~~~ 82 (319)
++|-|+.+--+ .....|.++|..+.+ ...|+.. .+.++.+.+++. .|.+.++++.......| .|..+.+.
T Consensus 22 ~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~---~~~~~~~~~~~~-~~~i~l~~~~~e~~~~y~~g~~~~~~ 92 (102)
T cd03066 22 KLIGYFKSEDS---EHYKAFEEAAEEFHP--YIKFFAT---FDSKVAKKLGLK-MNEVDFYEPFMEEPVTIPDKPYSEEE 92 (102)
T ss_pred EEEEEECCCCC---HHHHHHHHHHHhhhc--CCEEEEE---CcHHHHHHcCCC-CCcEEEeCCCCCCCcccCCCCCCHHH
Confidence 45556654333 345678889888843 4667553 345667778775 79899997643344678 78889999
Q ss_pred HHHHHHhc
Q 020926 83 LAEYVNNE 90 (319)
Q Consensus 83 i~~~i~~~ 90 (319)
|.+|+...
T Consensus 93 l~~fi~~~ 100 (102)
T cd03066 93 LVDFVEEH 100 (102)
T ss_pred HHHHHHHh
Confidence 99999864
No 406
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.51 E-value=0.12 Score=41.36 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=30.8
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEec
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDC 43 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~ 43 (319)
..++.|+.+.||||+.+.+.+..+...+.+ ++.+..+..
T Consensus 17 ~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~ 55 (178)
T cd03019 17 PEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPV 55 (178)
T ss_pred cEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCC
Confidence 468999999999999999999999888733 465554443
No 407
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=93.30 E-value=0.32 Score=32.47 Aligned_cols=64 Identities=8% Similarity=0.030 Sum_probs=50.9
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKG 67 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~ 67 (319)
+.+..|-+...+.+++....+.++-+.+. .+.+.+-.||..+++.+++.++|-.+||++=..+.
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P~ 65 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLPP 65 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhcCCC
Confidence 45566666666888888888888877765 46799999999999999999999999997544433
No 408
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=93.16 E-value=1.2 Score=31.52 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=51.2
Q ss_pred CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCH
Q 020926 120 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL 199 (319)
Q Consensus 120 ~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~ 199 (319)
+...++.|..+. ..|..+...++++|..- +.+.+-..+... ..|++.+..+|....++|.|-..-
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS---dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~G 83 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLS---DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMG 83 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhC---CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCc
Confidence 334455666554 88999999999888764 345443322111 369999987774567899999888
Q ss_pred HHHHHHHHH
Q 020926 200 EDFVSFINE 208 (319)
Q Consensus 200 ~~l~~~i~~ 208 (319)
.++..||..
T Consensus 84 hEf~Slila 92 (94)
T cd02974 84 HEFTSLVLA 92 (94)
T ss_pred hhHHHHHHH
Confidence 888888754
No 409
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.10 E-value=0.34 Score=35.01 Aligned_cols=64 Identities=17% Similarity=0.287 Sum_probs=45.2
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchh----hhhhcCCC-cCCeEEeccCCCC
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGVQ-GYPTIQWFPKGSL 69 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~-~~Pt~~~~~~~~~ 69 (319)
++|.=.++.||-+......|++......+ .+.++.+|.-+.++ ++.+|||. .-|.++++++|..
T Consensus 22 ~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~ 90 (105)
T PF11009_consen 22 VLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKV 90 (105)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEE
T ss_pred EEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEE
Confidence 45555788999999999899888887643 38999999987754 56789998 5699999999973
No 410
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=92.65 E-value=0.43 Score=37.36 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=37.4
Q ss_pred CCcEEE-EEECCCCccccch-HHHHHHHHHHhcCCCCeEEEEEeCc---cchhhHhhcCC
Q 020926 120 SKDVLV-EFYAPWCGHCKNL-APTYEKVAAAFTLEDDVVVANLDAD---KYKDLAEKYGV 174 (319)
Q Consensus 120 ~~~v~v-~F~~~wC~~C~~~-~~~~~~la~~~~~~~~~~~~~vd~~---~~~~l~~~~~v 174 (319)
++.+++ .|-..||+.|... .+.|.+...+|+..+-..+..+..+ ....+++++++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 344544 4456799999998 9999999999975432135555554 34457777776
No 411
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=3.3 Score=32.37 Aligned_cols=89 Identities=19% Similarity=0.300 Sum_probs=55.6
Q ss_pred CCCcEEEEEEC-CCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc---------------------chhhHhhcCCcc
Q 020926 119 KSKDVLVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVSG 176 (319)
Q Consensus 119 ~~~~v~v~F~~-~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~---------------------~~~l~~~~~v~~ 176 (319)
.++.|+++||- .+++.|....-.|+....+|... +..+.-|..|. ...+++.|||-.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWG 107 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCccc
Confidence 46789999985 58999999999999999888754 45555454442 225666776632
Q ss_pred ------------ccEEEEEeCCCcCeeecCC---CCCHHHHHHHHHH
Q 020926 177 ------------FPTLKFFPKGNKDGEEYGG---GRDLEDFVSFINE 208 (319)
Q Consensus 177 ------------~Pti~~~~~g~~~~~~~~g---~~~~~~l~~~i~~ 208 (319)
.++.+++..++.....+.. ....+++.+.|++
T Consensus 108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKK 154 (157)
T ss_pred ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHH
Confidence 3555666665554444422 1234555555554
No 412
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=91.91 E-value=0.34 Score=37.95 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=39.7
Q ss_pred eEEEEE-cCCChhhhhh-hHHHHHHHHHhhcCCce-EEEEEeccc---chhhhhhcCCC-cCC
Q 020926 4 NAFCVK-CDRCGHCKKL-APEYEKLGASFKKAKSV-LIGKVDCDE---HKSLCSKYGVQ-GYP 59 (319)
Q Consensus 4 ~~v~Fy-a~~C~~C~~~-~p~~~~~a~~~~~~~~v-~~~~vd~~~---~~~l~~~~~i~-~~P 59 (319)
++|.|| +.||+.|... .+.|.+..+++...+ + .++.|.++. ...+++++++. .+|
T Consensus 32 vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g-~~~V~~iS~D~~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 32 VVIFGVPGAFTPTCSAQHLPGYVENADELKAKG-VDEVICVSVNDPFVMKAWGKALGAKDKIR 93 (155)
T ss_pred EEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC-CCEEEEEECCCHHHHHHHHHhhCCCCcEE
Confidence 344444 7999999998 999999999997644 4 466666653 45677888772 444
No 413
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=91.88 E-value=0.19 Score=41.46 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=29.1
Q ss_pred eEEEEEcCCChhhhhhhHHH---HHHHHHhhcCCceEEEEEec
Q 020926 4 NAFCVKCDRCGHCKKLAPEY---EKLGASFKKAKSVLIGKVDC 43 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~---~~~a~~~~~~~~v~~~~vd~ 43 (319)
-+|+|+.-.||||.++.|.+ ..+.+.+.+ ++.+..+..
T Consensus 40 ~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~ 80 (207)
T PRK10954 40 QVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHV 80 (207)
T ss_pred eEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEecc
Confidence 37999999999999999876 777777743 456665544
No 414
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=91.82 E-value=1.6 Score=31.01 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=49.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHH
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALA 84 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~ 84 (319)
++.|..+. ..|+.+...+++++..- ++|.+...+... ..|++.+..++....++|.|-..-.++.
T Consensus 23 l~~f~~~~-~~~~e~~~ll~e~a~lS---dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~GhEf~ 87 (94)
T cd02974 23 LVASLDDS-EKSAELLELLEEIASLS---DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGHEFT 87 (94)
T ss_pred EEEEeCCC-cchHHHHHHHHHHHHhC---CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCchhHH
Confidence 45555555 88999988888888763 346654433211 4799999887754568999988888888
Q ss_pred HHHHh
Q 020926 85 EYVNN 89 (319)
Q Consensus 85 ~~i~~ 89 (319)
.|+..
T Consensus 88 Slila 92 (94)
T cd02974 88 SLVLA 92 (94)
T ss_pred HHHHH
Confidence 77753
No 415
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=91.67 E-value=0.47 Score=36.72 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=35.2
Q ss_pred EEEEECC------CCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch----hhHhhcCC----ccccEEEE
Q 020926 124 LVEFYAP------WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGV----SGFPTLKF 182 (319)
Q Consensus 124 ~v~F~~~------wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~----~l~~~~~v----~~~Pti~~ 182 (319)
+|.|+++ +|++|......|+.. .+.+-.+|++.++ +|.+..+. ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4667777 999999998888765 4566677776544 34444454 57887654
No 416
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=0.51 Score=36.85 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=42.7
Q ss_pred ceEEEEE-cCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecc---cchhhhhhcCCCcCCe
Q 020926 3 LNAFCVK-CDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCD---EHKSLCSKYGVQGYPT 60 (319)
Q Consensus 3 ~~~v~Fy-a~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~---~~~~l~~~~~i~~~Pt 60 (319)
.|+++|| ..++|-|-.-+-.|++...+++.. +..+..|..+ ....++++++++ ||-
T Consensus 32 ~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds~~~~~~F~~k~~L~-f~L 91 (157)
T COG1225 32 PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDSPKSHKKFAEKHGLT-FPL 91 (157)
T ss_pred cEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHHhCCC-cee
Confidence 3789999 589999999999999999999764 4666767665 346677777765 554
No 417
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=89.82 E-value=1.4 Score=30.60 Aligned_cols=75 Identities=9% Similarity=-0.008 Sum_probs=57.3
Q ss_pred cceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCC
Q 020926 2 FLNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 79 (319)
Q Consensus 2 ~~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~ 79 (319)
.+++=.|.|..-+.+++....+.++-+.... +.+.+-.||..+++.+++.+.|-.+||++=-.+.. ..+..|+.+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~-g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P--~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ-GVYALKVIDVLKNPQLAEEDKILATPTLSKILPPP--VRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCC--cceeecccc
Confidence 4566677788888888888888888666543 45999999999999999999999999965544443 355667654
No 418
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.51 E-value=3.1 Score=35.14 Aligned_cols=38 Identities=34% Similarity=0.471 Sum_probs=28.2
Q ss_pred hhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHh
Q 020926 166 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 209 (319)
Q Consensus 166 ~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 209 (319)
..++.++||.+.||+++-.. .+.|..+.+++.+.|...
T Consensus 205 ~~~a~~~gv~gTPt~~v~~~------~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLAQQLGVNGTPTFIVNGK------LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHhcCCCcCCeEEECCe------eecCCCCHHHHHHHHHHh
Confidence 35777889999999877521 678888888888887654
No 419
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=88.90 E-value=3.9 Score=32.88 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=27.6
Q ss_pred hhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHH
Q 020926 167 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 207 (319)
Q Consensus 167 ~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~ 207 (319)
..+.++||.++||+++ +| + ..+.|....+.|.+.|+
T Consensus 158 ~~a~~~gv~GvP~~vv--~g-~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 158 AEARQLGVFGVPTFVV--NG-K--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHTTCSSSSEEEE--TT-T--EEEESCSSHHHHHHHH-
T ss_pred HHHHHcCCcccCEEEE--CC-E--EEEECCCCHHHHHHHhC
Confidence 5667889999999988 44 2 56788888888887763
No 420
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=87.57 E-value=2.3 Score=28.38 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=45.3
Q ss_pred EEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEE
Q 020926 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 183 (319)
Q Consensus 123 v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~ 183 (319)
.+..|-+...+........+.++-+.+. .+.+.+-.||..+++++++.++|-..||++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 4556666655555666666666666654 46788999999999999999999999997644
No 421
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=86.99 E-value=2.6 Score=27.71 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=37.0
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHHHH
Q 020926 7 CVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEY 86 (319)
Q Consensus 7 ~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~~ 86 (319)
.++.++|++|++..-.+....- .+....++........+..+-..+|++.. .+|.. -.+...|.+|
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl------~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~-------l~es~aI~~y 68 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI------PVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF-------MAESLDIVAF 68 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC------CeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE-------eehHHHHHHH
Confidence 4667899999988876665422 23333444333222223334456788743 22321 2456677777
Q ss_pred HH
Q 020926 87 VN 88 (319)
Q Consensus 87 i~ 88 (319)
+.
T Consensus 69 L~ 70 (71)
T cd03037 69 ID 70 (71)
T ss_pred Hh
Confidence 64
No 422
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=86.59 E-value=0.55 Score=34.01 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=43.9
Q ss_pred EEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc----chhhHhhcCCccccEEEEEeCCCcCe----eecCCC
Q 020926 125 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLKFFPKGNKDG----EEYGGG 196 (319)
Q Consensus 125 v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~----~~~l~~~~~v~~~Pti~~~~~g~~~~----~~~~g~ 196 (319)
..|+.++|+.|+.....+++. ++.+-.+|..+ ..++.+-.+-.+.+.--+++..+... ..-...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ 73 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDE 73 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccC
Confidence 578999999999988777764 33344444432 22333333333333333343332111 111245
Q ss_pred CCHHHHHHHHHHhhCC
Q 020926 197 RDLEDFVSFINEKCGT 212 (319)
Q Consensus 197 ~~~~~l~~~i~~~~~~ 212 (319)
.+.+++.++|.++...
T Consensus 74 ls~~e~~~~l~~~p~L 89 (105)
T cd02977 74 LSDEEALELMAEHPKL 89 (105)
T ss_pred CCHHHHHHHHHhCcCe
Confidence 6788888888876543
No 423
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=86.56 E-value=2.9 Score=31.59 Aligned_cols=24 Identities=8% Similarity=0.301 Sum_probs=21.1
Q ss_pred ccchhhHhhcCCccccEEEEEeCC
Q 020926 163 DKYKDLAEKYGVSGFPTLKFFPKG 186 (319)
Q Consensus 163 ~~~~~l~~~~~v~~~Pti~~~~~g 186 (319)
.-++.+.++|+|+.+|++++..++
T Consensus 58 ~IdP~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 58 QIDPQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred EEChHHHhhcCceEcCEEEEECCC
Confidence 347899999999999999999776
No 424
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=86.50 E-value=2.9 Score=27.52 Aligned_cols=51 Identities=8% Similarity=0.066 Sum_probs=33.2
Q ss_pred EEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc-chhhHhhcCCccccEEE
Q 020926 125 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLK 181 (319)
Q Consensus 125 v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~-~~~l~~~~~v~~~Pti~ 181 (319)
+.|+.+||+.|.+..-.+.+..- .+.+..+|... .+++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 46788999999988766665532 34455565442 34555555566789874
No 425
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=24 Score=31.58 Aligned_cols=135 Identities=16% Similarity=0.255 Sum_probs=89.9
Q ss_pred CcCCeEEeccCCCCCCcccCCCCChHHHHHHH---HhcCCCCccccCCCCceEEcCccChHHHhhcCCCcEEEEEECCCC
Q 020926 56 QGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV---NNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFYAPWC 132 (319)
Q Consensus 56 ~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~~i---~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC 132 (319)
..-|++.+=++|.....+|.|-.---++..++ -+..+.+++ ++.+-.+++-.-.+..-+=.|++-.|
T Consensus 59 ~RkpSF~i~r~g~~~gv~FAglPlGHEftSlVLaLlqv~G~ppk----------~~q~vieqik~i~g~~~FETy~SltC 128 (520)
T COG3634 59 VRKPSFSINRPGEDQGVRFAGLPLGHEFTSLVLALLQVGGHPPK----------EDQDVIEQIKAIDGDFHFETYFSLTC 128 (520)
T ss_pred ccCCceeecCCCcccceEEecCcccchHHHHHHHHHHhcCCCCc----------hhHHHHHHHHhcCCceeEEEEEEeec
Confidence 35699988888877778888765444444443 333332221 23333344433356677778888899
Q ss_pred ccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHH
Q 020926 133 GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 208 (319)
Q Consensus 133 ~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~ 208 (319)
..|......++-++-- ++++.-..||-...++=.+.-+|-++||+++- |. ..-.|..+.++|+.-|..
T Consensus 129 ~nCPDVVQALN~msvl---Np~I~H~~IdGa~Fq~Evear~IMaVPtvfln--Ge---~fg~GRmtleeilaki~~ 196 (520)
T COG3634 129 HNCPDVVQALNLMSVL---NPRIKHTAIDGALFQDEVEARNIMAVPTVFLN--GE---EFGQGRMTLEEILAKIDT 196 (520)
T ss_pred cCChHHHHHHHHHHhc---CCCceeEEecchhhHhHHHhccceecceEEEc--ch---hhcccceeHHHHHHHhcC
Confidence 9999888777776654 47888888887765555666689999997663 42 223677888888887754
No 426
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=86.20 E-value=5.3 Score=26.65 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=42.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHH
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALA 84 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~ 84 (319)
+..|+.++|+.|++..-.+.+..- .+.+..+|.....++ +.-+-..+|++..=..|... . -.+...|.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi------~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~-~----l~eS~~I~ 69 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI------PYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQ-Q----LVDSSVII 69 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC------ceEEEECCchhHHHH-HHhCCCccCEEEECCCCCcc-E----EEcHHHHH
Confidence 346778999999998866654322 233333443222333 33455678988653211101 1 23577888
Q ss_pred HHHHhcC
Q 020926 85 EYVNNEG 91 (319)
Q Consensus 85 ~~i~~~~ 91 (319)
+|+.+..
T Consensus 70 ~yL~~~~ 76 (77)
T cd03040 70 STLKTYL 76 (77)
T ss_pred HHHHHHc
Confidence 8887654
No 427
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=86.11 E-value=5.7 Score=26.50 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=42.7
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHH
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 203 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~ 203 (319)
+..|+.+.|+.|++..-.+....-. +....+|.....++ +.-+...+|++..-..|+.. . -.....|.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~------y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~-~----l~eS~~I~ 69 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP------YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQ-Q----LVDSSVII 69 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc------eEEEECCchhHHHH-HHhCCCccCEEEECCCCCcc-E----EEcHHHHH
Confidence 4568889999999988766655332 23333343222333 23345578987653211101 1 12466788
Q ss_pred HHHHHhhC
Q 020926 204 SFINEKCG 211 (319)
Q Consensus 204 ~~i~~~~~ 211 (319)
+||.+.+|
T Consensus 70 ~yL~~~~~ 77 (77)
T cd03040 70 STLKTYLG 77 (77)
T ss_pred HHHHHHcC
Confidence 88877653
No 428
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=86.04 E-value=3 Score=27.45 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=33.2
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc-hhhhhhcCCCcCCeEEe
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-KSLCSKYGVQGYPTIQW 63 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~ 63 (319)
+.|+.+||++|++..-.+.+..- .+.+..+|.... .++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 35678999999998766654322 345566665432 44545556678899853
No 429
>PRK09301 circadian clock protein KaiB; Provisional
Probab=86.03 E-value=3.1 Score=29.86 Aligned_cols=74 Identities=11% Similarity=0.005 Sum_probs=57.2
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCCCCCcccCCCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRS 79 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~ 79 (319)
+++=.|.|..-+.+++....+.++-+.+.. +.+.+-.||..+++.+++.++|-.+||++=-.+.. ..+..|+.+
T Consensus 7 ~~LrLyVag~tp~S~~ai~nL~~icE~~l~-g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P--~rriiGDls 80 (103)
T PRK09301 7 YILKLYVAGNTPNSVRALKTLKNILETEFK-GVYALKVIDVLKNPQLAEEDKILATPTLAKILPPP--VRKIIGDLS 80 (103)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCC--cceeecccc
Confidence 566677788888888888888888666544 45999999999999999999999999965544443 356667764
No 430
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=85.86 E-value=2.4 Score=32.89 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=34.3
Q ss_pred EEEEEcC------CChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchh----hhhhcCC----CcCCeEEe
Q 020926 5 AFCVKCD------RCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKS----LCSKYGV----QGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~------~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i----~~~Pt~~~ 63 (319)
+|.|+++ +|++|++....|+.. .|.+-.+|.+.+.+ +.+..+- ..+|++.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4556666 899999988887753 36777888876544 3333443 56788654
No 431
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=85.02 E-value=5.8 Score=26.44 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=46.9
Q ss_pred EEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc-hhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHHHH
Q 020926 8 VKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEY 86 (319)
Q Consensus 8 Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~~ 86 (319)
++.++|++|++..=.+... + -.+.+..++..+. ..+.+...-..+|++. .+|.. -.+...|.+|
T Consensus 2 y~~~~Sp~~~kv~~~l~~~-----~-i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~-------l~dS~~I~~y 66 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEK-----G-IPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEV-------LTDSAAIIEY 66 (75)
T ss_dssp EEETTSHHHHHHHHHHHHH-----T-EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEE-------EESHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHc-----C-CeEEEeccCcccchhHHHhhcccccceEEE--ECCEE-------EeCHHHHHHH
Confidence 6789999999977555432 2 1355666665543 4555566677889986 33431 2468899999
Q ss_pred HHhcCCC
Q 020926 87 VNNEGGT 93 (319)
Q Consensus 87 i~~~~~~ 93 (319)
+++..+.
T Consensus 67 L~~~~~~ 73 (75)
T PF13417_consen 67 LEERYPG 73 (75)
T ss_dssp HHHHSTS
T ss_pred HHHHcCC
Confidence 9987654
No 432
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=84.35 E-value=5 Score=26.93 Aligned_cols=71 Identities=10% Similarity=0.103 Sum_probs=40.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc----hhhhhhcCCCcCCeEEeccCCCCCCcccCCCCCh
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRST 80 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~ 80 (319)
+..++.++|++|++..-.+.+.. +.+-.++.... .++.+..+-..+|++..- +++. . -.+.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g--------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~--~----l~es 66 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE--------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDP-NTGV--Q----MFES 66 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC--------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeC-CCCe--E----EEcH
Confidence 34566789999998776665542 33333444322 234333455678987542 2221 1 2456
Q ss_pred HHHHHHHHhc
Q 020926 81 EALAEYVNNE 90 (319)
Q Consensus 81 ~~i~~~i~~~ 90 (319)
..|.+|+.+.
T Consensus 67 ~~I~~yL~~~ 76 (77)
T cd03041 67 ADIVKYLFKT 76 (77)
T ss_pred HHHHHHHHHh
Confidence 7888888753
No 433
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=84.28 E-value=1.1 Score=32.39 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=42.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc----hhhhhhcCCCcCCeEEeccCCCCCCccc----CCC
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH----KSLCSKYGVQGYPTIQWFPKGSLEPKKY----EGP 77 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~~~~~~~~y----~g~ 77 (319)
..|+.|+|+.|++....+++. ++.+-.+|..++ .++.+-.+-.+.+.--++...+..-... ...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ 73 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDE 73 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccC
Confidence 568899999999988777652 355666666543 2333333333333433443332110110 134
Q ss_pred CChHHHHHHHHhcC
Q 020926 78 RSTEALAEYVNNEG 91 (319)
Q Consensus 78 ~~~~~i~~~i~~~~ 91 (319)
.+.+++.+++.+..
T Consensus 74 ls~~e~~~~l~~~p 87 (105)
T cd02977 74 LSDEEALELMAEHP 87 (105)
T ss_pred CCHHHHHHHHHhCc
Confidence 56777777777653
No 434
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=83.08 E-value=15 Score=26.56 Aligned_cols=86 Identities=10% Similarity=0.134 Sum_probs=64.6
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhh----hhcCCC-cCCeEEeccCCCCC--CcccCC
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLC----SKYGVQ-GYPTIQWFPKGSLE--PKKYEG 76 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~Pt~~~~~~~~~~--~~~y~g 76 (319)
.++.|--+-.+.-.++.+.+.++|+.+..++++.++-||-++-+-+. +.|+|. .-|.+-+.+-.... -.+-.+
T Consensus 23 ~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~m~~ 102 (120)
T cd03074 23 HIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWMEMDD 102 (120)
T ss_pred eEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEeccc
Confidence 56788888889999999999999999988789999999999876543 457776 34888777543322 122222
Q ss_pred ---CCChHHHHHHHHh
Q 020926 77 ---PRSTEALAEYVNN 89 (319)
Q Consensus 77 ---~~~~~~i~~~i~~ 89 (319)
..+++.|..|++.
T Consensus 103 ~~d~~t~~~Le~Wied 118 (120)
T cd03074 103 DEDLPTAEELEDWIED 118 (120)
T ss_pred ccccCcHHHHHHHHHh
Confidence 3688999999975
No 435
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=83.01 E-value=3.9 Score=30.08 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeC
Q 020926 137 NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK 185 (319)
Q Consensus 137 ~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~ 185 (319)
.+.+....+.+-....+.. .++.-++.+.++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5555555555544333222 22334788999999999999999876
No 436
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=82.97 E-value=0.8 Score=31.52 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=45.5
Q ss_pred EEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccC
Q 020926 8 VKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPK 66 (319)
Q Consensus 8 Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 66 (319)
|-+..-+.+++....+..+.+..-+ +.+.+-.||..+++.+++.++|-.+||++--.+
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~-~~~~LeVIDv~~~P~lAe~~~ivAtPtLik~~P 60 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLG-GRYELEVIDVLEQPELAEEDRIVATPTLIKESP 60 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCT-TTEEEEEEETTTSHSHHTTTEEECHHHHHTTSS
T ss_pred EECCCChHHHHHHHHHHHHHHhhCC-CcEEEEEEEcccCHhHHhHCCeeecceEeeccC
Confidence 3444555677777888888877543 579999999999999999999999999754433
No 437
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=82.24 E-value=10 Score=28.77 Aligned_cols=75 Identities=21% Similarity=0.383 Sum_probs=55.1
Q ss_pred cEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCc----cccEEEEEeCCCcCeeecCCCC
Q 020926 122 DVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS----GFPTLKFFPKGNKDGEEYGGGR 197 (319)
Q Consensus 122 ~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~----~~Pti~~~~~g~~~~~~~~g~~ 197 (319)
.-++.|+.|.|+=|......++. ..+.+-.+..++...+-++++|. +--|.++ +| ...+|..
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~--------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G----y~vEGHV 91 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA--------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG----YYVEGHV 91 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh--------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC----EEEeccC
Confidence 45788999999999887665551 25777777777777888889886 3344433 23 5568999
Q ss_pred CHHHHHHHHHHhh
Q 020926 198 DLEDFVSFINEKC 210 (319)
Q Consensus 198 ~~~~l~~~i~~~~ 210 (319)
..+++..++.+..
T Consensus 92 Pa~aI~~ll~~~p 104 (149)
T COG3019 92 PAEAIARLLAEKP 104 (149)
T ss_pred CHHHHHHHHhCCC
Confidence 9999999998654
No 438
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=81.46 E-value=8.1 Score=25.89 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=39.6
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc--chhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHH
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLED 201 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~ 201 (319)
+..++.++|+.|.+..-.+.+..-.| ....++... .+++.+.-+-..+|++..- +|+ .. -.....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y------~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~-~~~--~~----l~es~~ 68 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDV------ILYPCPKGSPKRDKFLEKGGKVQVPYLVDP-NTG--VQ----MFESAD 68 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcE------EEEECCCChHHHHHHHHhCCCCcccEEEeC-CCC--eE----EEcHHH
Confidence 34677789999998877776653322 233333221 2344443345678987432 222 11 124567
Q ss_pred HHHHHHH
Q 020926 202 FVSFINE 208 (319)
Q Consensus 202 l~~~i~~ 208 (319)
|..||.+
T Consensus 69 I~~yL~~ 75 (77)
T cd03041 69 IVKYLFK 75 (77)
T ss_pred HHHHHHH
Confidence 7777765
No 439
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=80.86 E-value=2.4 Score=32.11 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=23.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 46 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~ 46 (319)
+..|+.|+|+.|++....+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCC
Confidence 4567789999999977666542 355666665544
No 440
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=80.72 E-value=5.1 Score=31.99 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=37.7
Q ss_pred ceEEcCccChHHHhhcCCCcEEEEEECCCCc-cccchHHHHHHHHHHhcCC-CCeEEEEEeCc
Q 020926 103 NVVVLTADNFDEIVLDKSKDVLVEFYAPWCG-HCKNLAPTYEKVAAAFTLE-DDVVVANLDAD 163 (319)
Q Consensus 103 ~v~~l~~~~f~~~~~~~~~~v~v~F~~~wC~-~C~~~~~~~~~la~~~~~~-~~~~~~~vd~~ 163 (319)
.+..-++..+...- -.++.++|.|.-+.|+ .|......+.++.+.+... .++.++.|.+|
T Consensus 36 ~L~d~~G~~~~~~~-~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 36 TLTDQDGKTVTLDD-LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp EEEETTSSEEEGGG-GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred EEEcCCCCEecHHH-hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 34444555554332 3678999999888885 5888877788877776532 34555555544
No 441
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=80.63 E-value=1.4 Score=32.39 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=43.2
Q ss_pred EEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc----hhhHhhcCCccccEEEEEeCCCcCeee--cC---C
Q 020926 125 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFPKGNKDGEE--YG---G 195 (319)
Q Consensus 125 v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~----~~l~~~~~v~~~Pti~~~~~g~~~~~~--~~---g 195 (319)
..|+.++|+.|++....|++- ++.+-.+|...+ .++.+-.+..+.|..-+++..+..... .. .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence 468899999999988777653 344555554422 233333333344544455443321110 11 1
Q ss_pred CCCHHHHHHHHHHhhCC
Q 020926 196 GRDLEDFVSFINEKCGT 212 (319)
Q Consensus 196 ~~~~~~l~~~i~~~~~~ 212 (319)
..+.+++.++|.++...
T Consensus 74 ~~s~~e~~~~l~~~p~L 90 (111)
T cd03036 74 SLSEEEALELLSSDGML 90 (111)
T ss_pred cCCHHHHHHHHHhCcCe
Confidence 24567778887766543
No 442
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=79.84 E-value=2.2 Score=31.26 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=43.0
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch----hhhhhcCCCcCCeEEeccCCCCCCccc---CC--
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK----SLCSKYGVQGYPTIQWFPKGSLEPKKY---EG-- 76 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~~~~~~~~y---~g-- 76 (319)
..|+.|+|+.|++....+++- ++.+-.+|..+++ ++..-.+..+.|.-.++...+.. ++- .+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~-~~~l~~~~~~ 72 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKS-YRELGLKDKL 72 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCch-HHhCCccccc
Confidence 467889999999988777652 3666677765442 23333334445655555543321 111 11
Q ss_pred -CCChHHHHHHHHhcC
Q 020926 77 -PRSTEALAEYVNNEG 91 (319)
Q Consensus 77 -~~~~~~i~~~i~~~~ 91 (319)
..+.+++.+.+.+..
T Consensus 73 ~~~s~~e~~~~l~~~p 88 (111)
T cd03036 73 PSLSEEEALELLSSDG 88 (111)
T ss_pred ccCCHHHHHHHHHhCc
Confidence 235566677766643
No 443
>PHA03075 glutaredoxin-like protein; Provisional
Probab=79.59 E-value=2.6 Score=30.75 Aligned_cols=29 Identities=21% Similarity=0.621 Sum_probs=26.0
Q ss_pred CcEEEEEECCCCccccchHHHHHHHHHHh
Q 020926 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAF 149 (319)
Q Consensus 121 ~~v~v~F~~~wC~~C~~~~~~~~~la~~~ 149 (319)
+.+++.|..|.|+-|+....++.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 56899999999999999999998887766
No 444
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=79.43 E-value=1.7 Score=31.54 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=23.1
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 46 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~ 46 (319)
..|+.|+|+.|++....+++- ++.+-.+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccC
Confidence 568899999999987766642 355566665543
No 445
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=79.15 E-value=2.8 Score=26.74 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=31.6
Q ss_pred EEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch--hhHhhcCCccccEEEE
Q 020926 125 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK--DLAEKYGVSGFPTLKF 182 (319)
Q Consensus 125 v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~--~l~~~~~v~~~Pti~~ 182 (319)
..|+.++|+.|....-.+....- .+....++..... ++.+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 35778999999988777666532 2334444433222 2444556668897754
No 446
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=78.88 E-value=13 Score=28.20 Aligned_cols=74 Identities=22% Similarity=0.340 Sum_probs=50.6
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCc----CCeEEeccCCCCCCcccCCCCC
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQG----YPTIQWFPKGSLEPKKYEGPRS 79 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~----~Pt~~~~~~~~~~~~~y~g~~~ 79 (319)
-++.|++|.||=|......++. ..+.+-.+..++-..+-++++|.. ==|.++ +| ...+|...
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~--------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~G----y~vEGHVP 92 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA--------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NG----YYVEGHVP 92 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh--------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cC----EEEeccCC
Confidence 4678999999999887666652 136666666666666767787651 122222 33 45578899
Q ss_pred hHHHHHHHHhcC
Q 020926 80 TEALAEYVNNEG 91 (319)
Q Consensus 80 ~~~i~~~i~~~~ 91 (319)
.++|..++.+..
T Consensus 93 a~aI~~ll~~~p 104 (149)
T COG3019 93 AEAIARLLAEKP 104 (149)
T ss_pred HHHHHHHHhCCC
Confidence 999999998754
No 447
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=78.86 E-value=9.1 Score=26.61 Aligned_cols=75 Identities=17% Similarity=0.038 Sum_probs=52.2
Q ss_pred CcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCC
Q 020926 121 KDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 198 (319)
Q Consensus 121 ~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~ 198 (319)
..++=.|.+.--+..+.....+.++-+.... +.+.+--||..+++++++.++|-..||++=-.+. ...+..|+.+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~-g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~--P~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ-GVYALKVIDVLKNPQLAEEDKILATPTLSKILPP--PVRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC--Ccceeecccc
Confidence 3456667777666666666666666665443 3588888999999999999999999997654433 2344556543
No 448
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=78.55 E-value=2.1 Score=27.39 Aligned_cols=52 Identities=12% Similarity=0.028 Sum_probs=31.7
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccch--hhhhhcCCCcCCeEEe
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHK--SLCSKYGVQGYPTIQW 63 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~--~l~~~~~i~~~Pt~~~ 63 (319)
..|+.++|+.|++..-.+....- .+....++..... .+-+...-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 35778999999988877665522 2344444443322 2344556668898754
No 449
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=78.37 E-value=3.1 Score=30.79 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=24.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 46 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~ 46 (319)
..|+.++|+.|++....+++- ++.+-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCC
Confidence 457889999999988777752 366677776654
No 450
>PRK09301 circadian clock protein KaiB; Provisional
Probab=77.50 E-value=10 Score=27.29 Aligned_cols=76 Identities=16% Similarity=0.032 Sum_probs=54.2
Q ss_pred CCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCC
Q 020926 120 SKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 198 (319)
Q Consensus 120 ~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~ 198 (319)
+..++-.|.+.--+..+.....+.++-+.+.. +.+.+--||+.+++++++.++|-..||++=..+. ...+..|+.+
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~-g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~--P~rriiGDls 80 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK-GVYALKVIDVLKNPQLAEEDKILATPTLAKILPP--PVRKIIGDLS 80 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC--Ccceeecccc
Confidence 45677777787766666666666666665543 3588888999999999999999999997654333 3344566543
No 451
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.25 E-value=6 Score=32.90 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=35.2
Q ss_pred hhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhhCCCC
Q 020926 167 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR 214 (319)
Q Consensus 167 ~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 214 (319)
..+++.||+++|+++| ++ .+...|..+.+.+..-|.+..+...
T Consensus 175 ~~A~e~gI~gVP~fv~--d~---~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DG---KYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE--cC---cEeecCCCCHHHHHHHHHHHHhccc
Confidence 4678899999999988 33 3667999999999999998876543
No 452
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=76.64 E-value=13 Score=30.62 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=47.5
Q ss_pred CccChHHHhhcCCCcEEEEEECCCCc-cccchHHHHHHHHHHhc-CC-CCe--EEEEEeCc-cchhhHhhcCC-ccccEE
Q 020926 108 TADNFDEIVLDKSKDVLVEFYAPWCG-HCKNLAPTYEKVAAAFT-LE-DDV--VVANLDAD-KYKDLAEKYGV-SGFPTL 180 (319)
Q Consensus 108 ~~~~f~~~~~~~~~~v~v~F~~~wC~-~C~~~~~~~~~la~~~~-~~-~~~--~~~~vd~~-~~~~l~~~~~v-~~~Pti 180 (319)
+++.|...- -.+++++|.|.=+.|+ -|......+..+-+... .. .++ +++.+|-+ +.++..++|.. ...|.+
T Consensus 56 ~G~~~~~~~-l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~ 134 (207)
T COG1999 56 DGKPFTLKD-LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRW 134 (207)
T ss_pred CCCEeeccc-cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCe
Confidence 344444333 3688999999888887 48888887877777765 22 344 55555544 55777788877 444544
Q ss_pred EEE
Q 020926 181 KFF 183 (319)
Q Consensus 181 ~~~ 183 (319)
...
T Consensus 135 ~~l 137 (207)
T COG1999 135 IGL 137 (207)
T ss_pred eee
Confidence 433
No 453
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=76.59 E-value=9.1 Score=24.96 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=32.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc----chhhhhhcCCCcCCeEEe
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----HKSLCSKYGVQGYPTIQW 63 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~ 63 (319)
..|+.++|++|++..-.+....-. +....+|... ..++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID------VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC------ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 457779999999988777655222 3344555422 234445555667899864
No 454
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=76.08 E-value=22 Score=25.75 Aligned_cols=77 Identities=9% Similarity=0.080 Sum_probs=48.3
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccCCC------CCCcccCCC
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGS------LEPKKYEGP 77 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~~~------~~~~~y~g~ 77 (319)
++|-|+..--+ .....|.++|+.+.+ ...|+... +..+.+++++. .|.+++|.+.. .....|.|.
T Consensus 22 ~VVG~F~~~~~---~~~~~F~~vA~~~Rd--d~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~~~~k~e~~~~~~~~~ 92 (107)
T cd03068 22 IIIGVFSGEED---PAYQLYQDAANSLRE--DYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEKFQSKYEPKSHVLNKK 92 (107)
T ss_pred EEEEEECCCCC---HHHHHHHHHHHhccc--CCEEEEEC---hHHHHHhcCCC-CCceEEECcHHHhhhcCcceeeeecc
Confidence 45556655333 355678888888743 47775533 45677788876 56677774322 123567777
Q ss_pred -CChHH-HHHHHHh
Q 020926 78 -RSTEA-LAEYVNN 89 (319)
Q Consensus 78 -~~~~~-i~~~i~~ 89 (319)
.+.++ |..|+..
T Consensus 93 ~~~~~~~~~~f~~~ 106 (107)
T cd03068 93 DSTSEDELKDFFKE 106 (107)
T ss_pred ccchHHHHHHHHhc
Confidence 56655 9999874
No 455
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=75.54 E-value=5.2 Score=26.17 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=32.5
Q ss_pred EEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc----cchhhHhhcCCccccEEEE
Q 020926 125 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD----KYKDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 125 v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~----~~~~l~~~~~v~~~Pti~~ 182 (319)
..|+.++|+.|++..-.+....-. +....++.. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID------VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC------ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 467889999999988777766333 333444432 2234555455567898854
No 456
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=74.99 E-value=4.8 Score=29.74 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=42.5
Q ss_pred EEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccch-------hhHhhcCCccccEEEEEeCCCcCeeec----
Q 020926 125 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------DLAEKYGVSGFPTLKFFPKGNKDGEEY---- 193 (319)
Q Consensus 125 v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~-------~l~~~~~v~~~Pti~~~~~g~~~~~~~---- 193 (319)
..|+.++|+.|++....+++- ++.+-.+|..+.+ .+.+..|. ..--+++..+......
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~l~~~~~~---~~~~lin~~~~~~k~l~~~~ 70 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDGPTREELLDILSLLED---GIDPLLNTRGQSYRALNTSN 70 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCChhhHHHHHHHHHHcCC---CHHHheeCCCcchhhCCchh
Confidence 468899999999988777753 3455555554332 33344442 1112333332211111
Q ss_pred -CCCCCHHHHHHHHHHhhCC
Q 020926 194 -GGGRDLEDFVSFINEKCGT 212 (319)
Q Consensus 194 -~g~~~~~~l~~~i~~~~~~ 212 (319)
....+.+++.++|.++...
T Consensus 71 ~~~~ls~~e~~~~i~~~p~L 90 (117)
T TIGR01617 71 TFLDLSDKEALELLAEDPAL 90 (117)
T ss_pred hcccCCHHHHHHHHHhCcce
Confidence 1346778888888776543
No 457
>PRK12559 transcriptional regulator Spx; Provisional
Probab=74.89 E-value=4.6 Score=30.62 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=22.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 45 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~ 45 (319)
+..|+.|+|+.|++....+++- .+.+-.+|..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeC
Confidence 5578889999999977655542 25555555543
No 458
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=74.72 E-value=17 Score=32.99 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=58.2
Q ss_pred cCCCcEEEEEECCCCccccchHH-HHH-HH-HHHhcCCCCeEEEEEeCc--cchhhHhhcCCccccEEEEEeCCCcCeee
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAP-TYE-KV-AAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGNKDGEE 192 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~-~~~-~l-a~~~~~~~~~~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~g~~~~~~ 192 (319)
..++.++|.|-+.-......+.- .|. .. +..+ ...++.++|+.. ....++.-|-+..+|+++|+...|.....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l--s~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLev 93 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSL--SKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEV 93 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhh--hcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEE
Confidence 35677888887765444444431 222 21 1222 235777777765 44567788899999999999877766666
Q ss_pred cCCCCCHHHHHHHHHH
Q 020926 193 YGGGRDLEDFVSFINE 208 (319)
Q Consensus 193 ~~g~~~~~~l~~~i~~ 208 (319)
..|..++++|..-|.+
T Consensus 94 itg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 94 ITGFVTADELASSIEK 109 (506)
T ss_pred eeccccHHHHHHHHHH
Confidence 7888888887766654
No 459
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.71 E-value=5.6 Score=26.61 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=32.0
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc--------------h--hhhhhcCCCcCCeEEe
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH--------------K--SLCSKYGVQGYPTIQW 63 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~--------------~--~l~~~~~i~~~Pt~~~ 63 (319)
+.|++..||.|..+...++.+. |.+-.|+.++. + +-.+.+|.-++|.+.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~--------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~ 70 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN--------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT 70 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC--------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe
Confidence 6799999999976665555443 44445555432 1 2245667778899865
No 460
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.64 E-value=6.5 Score=26.30 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=18.1
Q ss_pred EEEECCCCccccchHHHHHHHH
Q 020926 125 VEFYAPWCGHCKNLAPTYEKVA 146 (319)
Q Consensus 125 v~F~~~wC~~C~~~~~~~~~la 146 (319)
+.|++.-||.|......++++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~ 26 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN 26 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC
Confidence 6899999999988777777663
No 461
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=73.41 E-value=9.7 Score=28.80 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=32.4
Q ss_pred chhhhhhcCCCcCCeEEeccCCC-------CCC---cccCCCCChHHHHHHHHhc
Q 020926 46 HKSLCSKYGVQGYPTIQWFPKGS-------LEP---KKYEGPRSTEALAEYVNNE 90 (319)
Q Consensus 46 ~~~l~~~~~i~~~Pt~~~~~~~~-------~~~---~~y~g~~~~~~i~~~i~~~ 90 (319)
++.+.++|+|+.+|++++..++. ..+ ....|+.+.+.-.+.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 68899999999999999998763 011 2223777777777666654
No 462
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=72.09 E-value=11 Score=24.67 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=28.4
Q ss_pred EEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEE
Q 020926 126 EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 181 (319)
Q Consensus 126 ~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~ 181 (319)
.++.++|++|++..-.+....-. +....++........+..+-..+|++.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~------~~~~~~~~~~~~~~~~~~~~~~vP~L~ 52 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP------VEQIILQNDDEATPIRMIGAKQVPILE 52 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC------eEEEECCCCchHHHHHhcCCCccCEEE
Confidence 57789999999887766655332 233334433222223333445678864
No 463
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=71.28 E-value=5 Score=30.40 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=17.5
Q ss_pred EEEEECCCCccccchHHHHHHH
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKV 145 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~l 145 (319)
+..|+.++|+.|+.....+++-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578899999999987766654
No 464
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.24 E-value=7.3 Score=32.41 Aligned_cols=43 Identities=16% Similarity=0.361 Sum_probs=33.7
Q ss_pred hhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHHHHHHhcCCCCc
Q 020926 48 SLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYVNNEGGTNV 95 (319)
Q Consensus 48 ~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~~~~~~ 95 (319)
..+++.||+++|++++ .++ +...|..+.+.+..-|.+..+...
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~---~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK---YAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE--cCc---EeecCCCCHHHHHHHHHHHHhccc
Confidence 4677899999999988 332 566799999999999988765443
No 465
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=71.18 E-value=14 Score=24.24 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=31.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc----chhhhhhcCCCcCCeEE
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE----HKSLCSKYGVQGYPTIQ 62 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~ 62 (319)
..|+.++|++|++..-.+.+..- .+....+|..+ ..++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi------~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL------ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC------CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 45788999999987766655422 24445555432 24555555566789985
No 466
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=70.13 E-value=11 Score=27.72 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCCcCCeEEeccC
Q 020926 18 KLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPK 66 (319)
Q Consensus 18 ~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 66 (319)
.+.+.+..+.+.....+.. .+..=++.+.++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 3444555554444332211 22333689999999999999999877
No 467
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=69.83 E-value=17 Score=23.80 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=32.4
Q ss_pred EEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc----chhhHhhcCCccccEEE
Q 020926 125 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLK 181 (319)
Q Consensus 125 v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~----~~~l~~~~~v~~~Pti~ 181 (319)
..|+.++|+.|+...-.+....- .+....+|... .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi------~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL------ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC------CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 46888999999987776666533 23444555322 24555554556789985
No 468
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=69.73 E-value=5.2 Score=29.44 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=23.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH 46 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~ 46 (319)
+..|+.++|+.|++....+++. ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCC
Confidence 4467789999999988777652 255556665443
No 469
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=69.41 E-value=6.3 Score=25.82 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=40.5
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc-hhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHH
Q 020926 6 FCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALA 84 (319)
Q Consensus 6 v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~ 84 (319)
..|+.++|+.|++..-.+....- ++....+|.... .++.+......+|++. .+|. . -.+...|.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi------~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~-~------l~es~aI~ 66 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV------SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDL-V------LYESRIIM 66 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC------ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCE-E------EEcHHHHH
Confidence 46788999999998766654422 234444554432 3444444556788764 2221 1 24567777
Q ss_pred HHHHh
Q 020926 85 EYVNN 89 (319)
Q Consensus 85 ~~i~~ 89 (319)
+|+.+
T Consensus 67 ~yL~~ 71 (73)
T cd03059 67 EYLDE 71 (73)
T ss_pred HHHHh
Confidence 77764
No 470
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=68.84 E-value=5.4 Score=26.16 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=39.2
Q ss_pred EEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc-chhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHH
Q 020926 125 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 203 (319)
Q Consensus 125 v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~-~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~ 203 (319)
..|+.++|+.|+...-.++...-. +....+|... .+++.+......+|++. .+| . . -.....|.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~------~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~-~--~----l~es~aI~ 66 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS------VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRD-L--V----LYESRIIM 66 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc------cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECC-E--E----EEcHHHHH
Confidence 467889999999987776655333 3344455432 23444444455789764 222 1 1 12345666
Q ss_pred HHHHH
Q 020926 204 SFINE 208 (319)
Q Consensus 204 ~~i~~ 208 (319)
.||.+
T Consensus 67 ~yL~~ 71 (73)
T cd03059 67 EYLDE 71 (73)
T ss_pred HHHHh
Confidence 66654
No 471
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=68.73 E-value=3.4 Score=29.95 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=16.8
Q ss_pred EEEECCCCccccchHHHHHHH
Q 020926 125 VEFYAPWCGHCKNLAPTYEKV 145 (319)
Q Consensus 125 v~F~~~wC~~C~~~~~~~~~l 145 (319)
..|+.|+|+.|++....+++-
T Consensus 2 ~iy~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR 22 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 578999999999977666644
No 472
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=68.18 E-value=8 Score=29.32 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=21.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEeccc
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDE 45 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~ 45 (319)
+..|+.|+|+.|++....+++ ..+.+-.+|..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~--------~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA--------HQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH--------cCCCeEEEECCC
Confidence 456778999999997655553 235556666543
No 473
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=66.16 E-value=27 Score=29.66 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=35.6
Q ss_pred cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcC-CccccEEEEEeC
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYG-VSGFPTLKFFPK 185 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~-v~~~Pti~~~~~ 185 (319)
..+|+.++...+.||+.|...+=.+--+-.+| +++.+...- ++. .+ -...|++.|..-
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf---Gn~~l~~~~-S~~------~d~~pn~Ptl~F~~~ 114 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRF---GNFSLEYHY-SDP------YDNYPNTPTLIFNNY 114 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhc---CCeeeEEee-cCc------ccCCCCCCeEEEecC
Confidence 67899999999999999988754433333344 455222211 111 12 236888887654
No 474
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=64.35 E-value=36 Score=28.62 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=26.3
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHhhc
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASFKK 32 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~~~ 32 (319)
.+|.|-+=.||+=..-.+.|.+++++|.+
T Consensus 105 LVlnFGS~TCPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 105 LVLNFGSCTCPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred eEEEcccccchHHHHHHHHHHHHHHHhhh
Confidence 58899999999999999999999999976
No 475
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=64.17 E-value=56 Score=24.13 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=31.5
Q ss_pred hhHhhcCCcc-ccEEEEEeCCCcCeeecCCCCCHHHHHHHHHH
Q 020926 167 DLAEKYGVSG-FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 208 (319)
Q Consensus 167 ~l~~~~~v~~-~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~ 208 (319)
.+.++|++.. .-++++..++|....++....+.++|...|..
T Consensus 68 ~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 68 ALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred HHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 7888898662 34566666655667778999999999998864
No 476
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=63.24 E-value=29 Score=23.91 Aligned_cols=53 Identities=6% Similarity=-0.001 Sum_probs=32.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccc-hhhhhhcCCCcCCeEEe
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEH-KSLCSKYGVQGYPTIQW 63 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~ 63 (319)
+..|+.+.|++|++..-.+....- .+.+..+|.... ..+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl------~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI------PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC------CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 345667889999987765554322 244555665433 33545555668899864
No 477
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=62.24 E-value=71 Score=27.23 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=29.4
Q ss_pred CCCcEEEEEECCCCcc-ccchHHHHHHHHHHhcCCCCe----EEEEEeCc
Q 020926 119 KSKDVLVEFYAPWCGH-CKNLAPTYEKVAAAFTLEDDV----VVANLDAD 163 (319)
Q Consensus 119 ~~~~v~v~F~~~wC~~-C~~~~~~~~~la~~~~~~~~~----~~~~vd~~ 163 (319)
.++-++++|--+.||. |......+.++-+.......+ .|+.+|-+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 4788999999998874 766655555555555433332 57777753
No 478
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=61.74 E-value=46 Score=28.29 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=53.0
Q ss_pred ceEEEEEcCCChh-hhhhhHHHHHHHHHhhcCCce----EEEEEecccc--------------------------hhhhh
Q 020926 3 LNAFCVKCDRCGH-CKKLAPEYEKLGASFKKAKSV----LIGKVDCDEH--------------------------KSLCS 51 (319)
Q Consensus 3 ~~~v~Fya~~C~~-C~~~~p~~~~~a~~~~~~~~v----~~~~vd~~~~--------------------------~~l~~ 51 (319)
.++++|-=++||. |-.....+..+.++.+....+ .|+.||-..+ +.+|+
T Consensus 141 w~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak 220 (280)
T KOG2792|consen 141 WSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAK 220 (280)
T ss_pred eEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHH
Confidence 3688888899985 877666666666666554322 4666664321 35677
Q ss_pred hcCCCcCC-------------eEEec--cCCCCCCcccCCCCChHHHHHHHHhc
Q 020926 52 KYGVQGYP-------------TIQWF--PKGSLEPKKYEGPRSTEALAEYVNNE 90 (319)
Q Consensus 52 ~~~i~~~P-------------t~~~~--~~~~~~~~~y~g~~~~~~i~~~i~~~ 90 (319)
+|.|.--+ ++++| ++.+....-|.-.++++++.+-|..+
T Consensus 221 ~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~ 274 (280)
T KOG2792|consen 221 KYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKH 274 (280)
T ss_pred HhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHH
Confidence 77665222 23333 45554544555567888888777654
No 479
>PRK12559 transcriptional regulator Spx; Provisional
Probab=61.08 E-value=9.8 Score=28.80 Aligned_cols=82 Identities=12% Similarity=0.140 Sum_probs=41.4
Q ss_pred EEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCcc----chhhHhhcCCccccEEEEEeCCCcCeeec---CCC
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLKFFPKGNKDGEEY---GGG 196 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~----~~~l~~~~~v~~~Pti~~~~~g~~~~~~~---~g~ 196 (319)
+..|+.|+|+.|+.....|++- ++.+-.+|... .+++..-+...+.|.--+++..+...... ...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~~~ 73 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINIEE 73 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCccc
Confidence 4678899999999977666654 33344444332 22333333332233323444333211111 123
Q ss_pred CCHHHHHHHHHHhhCCC
Q 020926 197 RDLEDFVSFINEKCGTS 213 (319)
Q Consensus 197 ~~~~~l~~~i~~~~~~~ 213 (319)
.+.+++.+.|.++...-
T Consensus 74 ls~~e~i~ll~~~P~Li 90 (131)
T PRK12559 74 LSLNEFYKLIIEHPLML 90 (131)
T ss_pred CCHHHHHHHHHhCcceE
Confidence 45677777777655433
No 480
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=60.61 E-value=29 Score=27.61 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=29.6
Q ss_pred eEEEEEcCCCh-hhhhhhHHHHHHHHHhhcC-CceEEEEEecc
Q 020926 4 NAFCVKCDRCG-HCKKLAPEYEKLGASFKKA-KSVLIGKVDCD 44 (319)
Q Consensus 4 ~~v~Fya~~C~-~C~~~~p~~~~~a~~~~~~-~~v~~~~vd~~ 44 (319)
++|.|.=..|+ .|-.....+.++.+.+... .++.++.|..|
T Consensus 55 ~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 55 VLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp EEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred EEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 56777778886 6999999999998887664 35666666555
No 481
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=60.39 E-value=36 Score=23.43 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=33.6
Q ss_pred EEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccc-hhhHhhcCCccccEEEE
Q 020926 123 VLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-KDLAEKYGVSGFPTLKF 182 (319)
Q Consensus 123 v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~-~~l~~~~~v~~~Pti~~ 182 (319)
.+..|+.+.|+.|+...-.+....- .+....++.... +++.+......+|++..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl------~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNI------PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCC------CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4566788899999987666655432 344555554432 33555445667898763
No 482
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=60.28 E-value=17 Score=29.65 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=29.7
Q ss_pred cchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHH
Q 020926 164 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 207 (319)
Q Consensus 164 ~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~ 207 (319)
-++.+.++|+|+.+|++++.... ......|..+...-++.+.
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~--~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQ--GYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCC--CCCEEEecccHHHHHHHHH
Confidence 36889999999999999997543 2334556666665555554
No 483
>PHA03075 glutaredoxin-like protein; Provisional
Probab=59.64 E-value=9.8 Score=27.86 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=24.3
Q ss_pred cceEEEEEcCCChhhhhhhHHHHHHHHHh
Q 020926 2 FLNAFCVKCDRCGHCKKLAPEYEKLGASF 30 (319)
Q Consensus 2 ~~~~v~Fya~~C~~C~~~~p~~~~~a~~~ 30 (319)
=-+++.|-.|.|+-|+.....+..+.++|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 34789999999999999998887776665
No 484
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=59.19 E-value=18 Score=29.33 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=30.7
Q ss_pred hhhHhhcCCccccEEEEEeCCCcCeeecCC--CCCHHHHHHHHHHhh
Q 020926 166 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINEKC 210 (319)
Q Consensus 166 ~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g--~~~~~~l~~~i~~~~ 210 (319)
..++++.++.+|||+++-++|.. -..-.| -.+.+++..++.+..
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~-~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTM-YVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCce-EeccCCcccCCcHHHHHHHHHHH
Confidence 35788999999999999997742 222234 356677777776543
No 485
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=56.30 E-value=17 Score=26.39 Aligned_cols=53 Identities=15% Similarity=0.307 Sum_probs=34.9
Q ss_pred EECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCc--cccEEEEE
Q 020926 127 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--GFPTLKFF 183 (319)
Q Consensus 127 F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~--~~Pti~~~ 183 (319)
||..+|+-|......+... ...+.+.++.+......++.+.++++ ...+.+..
T Consensus 2 ~YDg~C~lC~~~~~~l~~~----d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 56 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR----DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL 56 (114)
T ss_pred EECCCCHhHHHHHHHHHhc----CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE
Confidence 7899999999988877766 22246777776444555556667765 34444443
No 486
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=55.59 E-value=15 Score=26.94 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=17.5
Q ss_pred EEEEECCCCccccchHHHHHHH
Q 020926 124 LVEFYAPWCGHCKNLAPTYEKV 145 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~l 145 (319)
+..|+.++|+.|++....|++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 3468889999999987777654
No 487
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=55.16 E-value=42 Score=24.45 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=34.7
Q ss_pred cCCCcEEEEEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCc
Q 020926 118 DKSKDVLVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 163 (319)
Q Consensus 118 ~~~~~v~v~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~ 163 (319)
-.+++++|.=.|+.|+.-. ....+.++.++|+.. .+.+..+-|.
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~-gl~ILaFPcn 62 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK-GLEILAFPCN 62 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG-TEEEEEEEBS
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC-CeEEEeeehH
Confidence 3578899999999999877 667889999999754 5777776665
No 488
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=55.13 E-value=5.9 Score=27.27 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=40.4
Q ss_pred EECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEE
Q 020926 127 FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK 181 (319)
Q Consensus 127 F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~ 181 (319)
|-+..-+........+..+..... ...+.+--||+.+++++++.++|-..||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYL-GGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHC-TTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhC-CCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 334433445555666777776653 457899999999999999999999999975
No 489
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=54.61 E-value=19 Score=26.21 Aligned_cols=56 Identities=11% Similarity=0.254 Sum_probs=35.8
Q ss_pred EEcCCChhhhhhhHHHHHHHHHhhcCCceEEEEEecccchhhhhhcCCC--cCCeEEec-cCC
Q 020926 8 VKCDRCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQ--GYPTIQWF-PKG 67 (319)
Q Consensus 8 Fya~~C~~C~~~~p~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~-~~~ 67 (319)
||-.+|+.|......+..... .+.+.++.+.......+...+++. ...+.+.. .+|
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 60 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR----GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDG 60 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC----CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCC
Confidence 788999999999888877621 235777766545555556667765 33444443 344
No 490
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=54.03 E-value=1.2e+02 Score=24.91 Aligned_cols=73 Identities=23% Similarity=0.236 Sum_probs=46.3
Q ss_pred EEECCCCccccchHHHHHHHHHHhcCCCCeEEEEEeCccchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHH
Q 020926 126 EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 205 (319)
Q Consensus 126 ~F~~~wC~~C~~~~~~~~~la~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~ 205 (319)
.|.-.-|..|..+...++.-+ + -+.+.+ ++++....++-+-+|-++|++++ +| -..|.+..++++|...
T Consensus 15 I~~HktC~ssy~Lf~~L~nkg--l--l~~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DG---el~~~dpVdp~~ies~ 83 (265)
T COG5494 15 IFTHKTCVSSYMLFEYLENKG--L--LGKVKI--IDAELPPFLAFEKGVISVPSVFI--DG---ELVYADPVDPEEIESI 83 (265)
T ss_pred EEEecchHHHHHHHHHHHhcC--C--CCCceE--EEcCCChHHHhhcceeecceEEE--cC---eEEEcCCCCHHHHHHH
Confidence 355566777776655554311 0 134444 45555666666667889998644 44 2567888999999998
Q ss_pred HHHh
Q 020926 206 INEK 209 (319)
Q Consensus 206 i~~~ 209 (319)
+...
T Consensus 84 ~~G~ 87 (265)
T COG5494 84 LSGQ 87 (265)
T ss_pred HcCc
Confidence 8644
No 491
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=53.82 E-value=14 Score=29.85 Aligned_cols=36 Identities=17% Similarity=0.414 Sum_probs=26.9
Q ss_pred hhhhhhcCCCcCCeEEeccCCCCCCcccCCCCChHHHHHHH
Q 020926 47 KSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSTEALAEYV 87 (319)
Q Consensus 47 ~~l~~~~~i~~~Pt~~~~~~~~~~~~~y~g~~~~~~i~~~i 87 (319)
...+.+.||.++||+++ +|+ ....|..+.+.+.+.+
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~---~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGK---YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCe---EeecCCCCHHHHHHHh
Confidence 45677889999999988 443 3457888888887655
No 492
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=53.73 E-value=14 Score=29.82 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=28.3
Q ss_pred cchhhHhhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHH
Q 020926 164 KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 206 (319)
Q Consensus 164 ~~~~l~~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i 206 (319)
.+...+.+.||.++||+++ +| + ....|..+.+.+.+.|
T Consensus 163 ~~~~~a~~~gv~G~Pt~vv--~g-~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 163 ADEARARQLGISGVPFFVF--NG-K--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHHCCCCcCCEEEE--CC-e--EeecCCCCHHHHHHHh
Confidence 3445677899999999988 33 2 4468999998887765
No 493
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=53.70 E-value=88 Score=23.08 Aligned_cols=77 Identities=9% Similarity=0.177 Sum_probs=46.8
Q ss_pred CChhhhhhhHHHHHHHHHhhcCCceEEEEE-ecccch-----------hhhhhcCCC--cCCeEEeccCCCCCCcccCCC
Q 020926 12 RCGHCKKLAPEYEKLGASFKKAKSVLIGKV-DCDEHK-----------SLCSKYGVQ--GYPTIQWFPKGSLEPKKYEGP 77 (319)
Q Consensus 12 ~C~~C~~~~p~~~~~a~~~~~~~~v~~~~v-d~~~~~-----------~l~~~~~i~--~~Pt~~~~~~~~~~~~~y~g~ 77 (319)
.-+.=+.....+.+....+... ++.+..+ +-.... .+.+.|++. ++-.+++=+.|+ ...++...
T Consensus 21 ~d~~~~~q~~~L~~~~~~l~eR-di~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~-vK~r~~~p 98 (118)
T PF13778_consen 21 DDPRYQQQLEELQNNRCGLDER-DIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGG-VKLRWPEP 98 (118)
T ss_pred CCHHHHHHHHHHHhhhhccccC-ceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCc-EEEecCCC
Confidence 3344455555666655555443 4555544 333323 677888865 333444445555 55888899
Q ss_pred CChHHHHHHHHhc
Q 020926 78 RSTEALAEYVNNE 90 (319)
Q Consensus 78 ~~~~~i~~~i~~~ 90 (319)
.+.+.|...|...
T Consensus 99 ~~~~~lf~~ID~M 111 (118)
T PF13778_consen 99 IDPEELFDTIDAM 111 (118)
T ss_pred CCHHHHHHHHhCC
Confidence 9999999999864
No 494
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=52.30 E-value=24 Score=29.54 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=35.5
Q ss_pred ceEEEEEcCCChhhhhhhHHHHHHHHHhhcCC--ceEEEEEeccc
Q 020926 3 LNAFCVKCDRCGHCKKLAPEYEKLGASFKKAK--SVLIGKVDCDE 45 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~~~~~a~~~~~~~--~v~~~~vd~~~ 45 (319)
.++|-+-..+|..|..-+..++.|...+...+ +|.|+.||-..
T Consensus 28 VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 28 VTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred EEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 35677777899999999999999998887654 79999999653
No 495
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=49.48 E-value=20 Score=27.10 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=16.2
Q ss_pred EEEEECCCCccccchHHHHHH
Q 020926 124 LVEFYAPWCGHCKNLAPTYEK 144 (319)
Q Consensus 124 ~v~F~~~wC~~C~~~~~~~~~ 144 (319)
+..|+.++|+.|+.....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 457888999999997666554
No 496
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.09 E-value=30 Score=33.68 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=48.0
Q ss_pred ceEEEEEcCCChhhhhhhHH-H--HHHHHHhhcCCceEEEEEecccchhhhhhcC--------CCcCCeEEeccCCC
Q 020926 3 LNAFCVKCDRCGHCKKLAPE-Y--EKLGASFKKAKSVLIGKVDCDEHKSLCSKYG--------VQGYPTIQWFPKGS 68 (319)
Q Consensus 3 ~~~v~Fya~~C~~C~~~~p~-~--~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~--------i~~~Pt~~~~~~~~ 68 (319)
.|||-.-.+||-.|.-|..+ | .++|+.++. .++-++||-++-+++-+.|. --+-|--+|..+++
T Consensus 45 PIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~ 119 (667)
T COG1331 45 PILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDG 119 (667)
T ss_pred CEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCCC
Confidence 57788888999999999874 3 667777754 58889999999888766663 44779766665544
No 497
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=48.24 E-value=28 Score=27.76 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=24.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhh
Q 020926 5 AFCVKCDRCGHCKKLAPEYEKLGASFK 31 (319)
Q Consensus 5 ~v~Fya~~C~~C~~~~p~~~~~a~~~~ 31 (319)
+..||..-||+|-...+.+.++.+.+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~ 28 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYP 28 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 678899999999999999999999883
No 498
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=47.22 E-value=1.6e+02 Score=24.20 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=29.8
Q ss_pred hhcCCccccEEEEEeCCCcCeeecCCCCCHHHHHHHHHHhh
Q 020926 170 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 210 (319)
Q Consensus 170 ~~~~v~~~Pti~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 210 (319)
..|.+..-..++++.+++.....|.+..+.+.+.+.++...
T Consensus 164 ~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 164 QNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred CCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 45667777778888877776666777667888888887654
No 499
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=47.18 E-value=39 Score=28.36 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=21.7
Q ss_pred eEEEEEcCCChhhhhhhHHHHHHHHHh
Q 020926 4 NAFCVKCDRCGHCKKLAPEYEKLGASF 30 (319)
Q Consensus 4 ~~v~Fya~~C~~C~~~~p~~~~~a~~~ 30 (319)
.++.|+-..||+|++..|.+.+.....
T Consensus 87 ~v~~f~d~~Cp~C~~~~~~l~~~~i~~ 113 (244)
T COG1651 87 TVVEFFDYTCPYCKEAFPELKKKYIDD 113 (244)
T ss_pred eEEEEecCcCccHHHHHHHHHHHhhhc
Confidence 678999999999988888888754443
No 500
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=46.07 E-value=28 Score=27.80 Aligned_cols=24 Identities=8% Similarity=-0.237 Sum_probs=20.7
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHh
Q 020926 7 CVKCDRCGHCKKLAPEYEKLGASF 30 (319)
Q Consensus 7 ~Fya~~C~~C~~~~p~~~~~a~~~ 30 (319)
.|+-.-||.|--..+.+.++...+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~ 26 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARH 26 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHh
Confidence 456689999999999999998876
Done!