Query 020929
Match_columns 319
No_of_seqs 80 out of 82
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 10:15:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kgw_A Alanine-glyoxylate amin 54.4 23 0.0008 29.6 5.8 26 43-68 325-350 (393)
2 1rz4_A Eukaryotic translation 52.9 7.9 0.00027 34.1 2.8 23 52-74 167-189 (226)
3 2ql2_B Neurod1, neurogenic dif 49.2 15 0.00051 26.6 3.3 25 16-40 3-27 (60)
4 2d5w_A Peptide ABC transporter 44.9 33 0.0011 32.4 5.8 48 27-74 338-396 (603)
5 3nnk_A Ureidoglycine-glyoxylat 42.7 42 0.0014 28.5 5.6 25 44-68 328-352 (411)
6 3ix7_A Uncharacterized protein 42.4 44 0.0015 27.5 5.6 46 19-66 52-101 (134)
7 3uwc_A Nucleotide-sugar aminot 39.5 60 0.002 27.3 6.0 48 20-68 248-311 (374)
8 3isl_A Purine catabolism prote 38.8 60 0.0021 27.6 6.0 26 43-68 327-352 (416)
9 3frk_A QDTB; aminotransferase, 38.4 40 0.0014 28.7 4.9 46 20-67 247-307 (373)
10 2huf_A Alanine glyoxylate amin 36.7 84 0.0029 26.5 6.6 24 45-68 322-345 (393)
11 4b0z_A RPN12, 26S proteasome r 36.1 22 0.00077 30.7 3.0 50 20-73 171-225 (229)
12 3qqa_A CMER; alpha-helical, he 35.7 84 0.0029 23.8 5.8 47 18-75 13-59 (216)
13 1mdy_A Protein (MYOD BHLH doma 35.3 74 0.0025 23.5 5.3 45 12-56 9-53 (68)
14 1hlo_A Protein (transcription 34.0 77 0.0026 23.3 5.2 44 14-57 11-54 (80)
15 3u5v_A Protein MAX, transcript 33.8 20 0.0007 27.0 2.1 27 14-40 4-30 (76)
16 2kxh_B Peptide of FAR upstream 33.8 15 0.00051 24.7 1.1 11 23-33 14-24 (31)
17 2o1b_A Aminotransferase, class 33.1 70 0.0024 27.9 5.6 25 44-68 342-366 (404)
18 3lvu_A ABC transporter, peripl 32.9 44 0.0015 27.6 4.1 18 53-70 102-119 (258)
19 1nkp_B MAX protein, MYC proto- 31.0 99 0.0034 22.7 5.4 42 16-57 3-44 (83)
20 3kkc_A TETR family transcripti 28.6 1.1E+02 0.0039 22.4 5.4 47 18-75 6-52 (177)
21 3g1o_A Transcriptional regulat 27.6 32 0.0011 27.7 2.4 43 21-74 40-82 (255)
22 3q0w_A HTH-type transcriptiona 27.5 46 0.0016 26.4 3.2 43 21-74 41-83 (236)
23 3ry3_A Putative solute-binding 27.2 77 0.0026 29.6 5.2 48 26-73 297-354 (528)
24 3nyt_A Aminotransferase WBPE; 26.9 1.2E+02 0.004 25.9 5.8 25 21-46 247-271 (367)
25 3him_A Probable transcriptiona 25.4 61 0.0021 24.3 3.4 44 21-75 13-56 (211)
26 3hbx_A GAD 1, glutamate decarb 24.3 83 0.0029 29.1 4.8 49 17-66 338-402 (502)
27 3rq1_A Aminotransferase class 24.1 1E+02 0.0034 26.7 5.0 26 50-76 367-392 (418)
28 2qwt_A Transcriptional regulat 24.0 1.1E+02 0.0039 23.4 4.8 24 21-45 10-33 (196)
29 4gl8_A Oligopeptide ABC transp 23.7 42 0.0014 30.9 2.7 39 26-64 315-363 (529)
30 2z61_A Probable aspartate amin 23.6 1.7E+02 0.0057 24.7 6.2 19 50-68 316-334 (370)
31 2x5f_A Aspartate_tyrosine_phen 23.1 1.2E+02 0.0042 26.3 5.4 25 44-69 374-398 (430)
32 3nra_A Aspartate aminotransfer 22.8 1.6E+02 0.0055 24.9 5.9 20 49-68 349-368 (407)
33 3f1b_A TETR-like transcription 22.7 82 0.0028 23.5 3.7 45 20-75 10-54 (203)
34 3ez1_A Aminotransferase MOCR f 22.4 1.6E+02 0.0056 25.4 6.0 24 52-75 357-380 (423)
35 2x5d_A Probable aminotransfera 22.0 1.7E+02 0.0059 25.2 6.1 25 44-68 334-361 (412)
36 3t18_A Aminotransferase class 21.5 1.3E+02 0.0046 25.8 5.3 26 50-76 365-390 (413)
37 3pam_A Transmembrane protein; 21.5 81 0.0028 26.0 3.8 19 52-70 102-120 (259)
38 1ng7_A Poliovirus 3A-N, genome 21.5 33 0.0011 25.8 1.2 12 56-67 35-46 (60)
39 3jtx_A Aminotransferase; NP_28 21.4 2.3E+02 0.0079 23.9 6.6 20 49-68 336-355 (396)
40 3lwj_A Putative TETR-family tr 21.2 96 0.0033 23.3 3.8 45 19-74 7-51 (202)
41 3lhq_A Acrab operon repressor 21.1 1.3E+02 0.0045 22.5 4.5 46 18-74 8-53 (220)
42 3t66_A Nickel ABC transporter 20.7 1E+02 0.0035 28.4 4.6 48 26-74 268-325 (496)
43 2ch1_A 3-hydroxykynurenine tra 20.6 2.3E+02 0.008 23.8 6.5 21 48-68 325-345 (396)
44 2q5w_D Molybdopterin convertin 20.4 42 0.0014 23.5 1.5 44 32-75 4-58 (77)
45 3ffr_A Phosphoserine aminotran 20.2 1.2E+02 0.004 25.0 4.4 46 20-68 265-327 (362)
46 1yiz_A Kynurenine aminotransfe 20.2 1.3E+02 0.0045 26.0 4.9 23 50-73 369-391 (429)
No 1
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=54.44 E-value=23 Score=29.64 Aligned_cols=26 Identities=4% Similarity=0.107 Sum_probs=20.4
Q ss_pred CCCCCccChHHHHHHHHHHhCcEEcC
Q 020929 43 FKLPKHCDNNEVLKALCAEAGWIVEE 68 (319)
Q Consensus 43 y~Lpk~~D~NeVlkaLc~eAGw~ve~ 68 (319)
+.+|+..|..+|.+.|.+++|..|.+
T Consensus 325 ~~~~~~~~~~~~~~~l~~~~gi~v~~ 350 (393)
T 3kgw_A 325 VTVPAGYNWRDIVSYVLDHFSIEISG 350 (393)
T ss_dssp EECCTTBCHHHHHHHHHHHHCEECBC
T ss_pred EeCCCCCCHHHHHHHHHHhCCEEEeC
Confidence 34566667889999998888988875
No 2
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=52.93 E-value=7.9 Score=34.12 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhCcEEcCCCceec
Q 020929 52 NEVLKALCAEAGWIVEEDGTTYR 74 (319)
Q Consensus 52 NeVlkaLc~eAGw~ve~DGttyr 74 (319)
++-++..|.+.||.|+.||..|=
T Consensus 167 ~~el~~fi~~~GW~vd~~g~I~~ 189 (226)
T 1rz4_A 167 DSQLKVWMSKYGWSADESGQIFI 189 (226)
T ss_dssp HHHHHHHHHHHTCEECC--CEEC
T ss_pred HHHHHHHHHHCCCEECCCccEEe
Confidence 46678888889999999998764
No 3
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=49.17 E-value=15 Score=26.58 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.4
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhhhc
Q 020929 16 RENNKRRERRRRAIAAKIFSGLRAE 40 (319)
Q Consensus 16 rEnnkrRERrRRAIaakIfaGLR~~ 40 (319)
|.....|||+|+.---.-|..||.+
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~ 27 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKV 27 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556689999999999999999985
No 4
>2d5w_A Peptide ABC transporter, peptide-binding protein; protein-peptide complex, peptide binding protein; 1.30A {Thermus thermophilus}
Probab=44.90 E-value=33 Score=32.40 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhhcCCCCCCC-----------ccChHHHHHHHHHHhCcEEcCCCceec
Q 020929 27 RAIAAKIFSGLRAEGNFKLPK-----------HCDNNEVLKALCAEAGWIVEEDGTTYR 74 (319)
Q Consensus 27 RAIaakIfaGLR~~Gny~Lpk-----------~~D~NeVlkaLc~eAGw~ve~DGttyr 74 (319)
.+|+..+|.|.-.-.+--+|+ ..-+-|--|+|.+||||..+.||..+.
T Consensus 338 ~~i~~~~~~g~~~~a~~~~pp~~~~~~~~~~~~~yd~~kAk~LL~eAG~~~~~dG~~~~ 396 (603)
T 2d5w_A 338 EGLVKAFFDGLQPVAHTWIAPVNPLFNPNVKKYEFDLKKAEALLAEMGWRKGPDGILQR 396 (603)
T ss_dssp HHHHHHHHTTSSCBCSSSSCTTSTTCCTTSCCCCCCHHHHHHHHHHTTCEECTTSCEEE
T ss_pred HHHHHHHhcCCCcccCCCCCCCCcccccccccCCCCHHHHHHHHHHcCCcCCCCCeEee
Confidence 344567787754333323332 111235668899999999777776554
No 5
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=42.72 E-value=42 Score=28.49 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=19.6
Q ss_pred CCCCccChHHHHHHHHHHhCcEEcC
Q 020929 44 KLPKHCDNNEVLKALCAEAGWIVEE 68 (319)
Q Consensus 44 ~Lpk~~D~NeVlkaLc~eAGw~ve~ 68 (319)
.+|+..|..+|.+.|.++.|..|-+
T Consensus 328 ~~~~~~~~~~l~~~l~~~~gi~v~~ 352 (411)
T 3nnk_A 328 VIPQGINGDQARKLMLEDFGIEIGT 352 (411)
T ss_dssp ECCTTCCHHHHHHHHHHHHSEEEEE
T ss_pred ECCCCCCHHHHHHHHHHhcCeEEeC
Confidence 3555667889999998888998864
No 6
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=42.43 E-value=44 Score=27.52 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhcCCC----CCCCccChHHHHHHHHHHhCcEE
Q 020929 19 NKRRERRRRAIAAKIFSGLRAEGNF----KLPKHCDNNEVLKALCAEAGWIV 66 (319)
Q Consensus 19 nkrRERrRRAIaakIfaGLR~~Gny----~Lpk~~D~NeVlkaLc~eAGw~v 66 (319)
+.+|.|-||++ +|...||..+++ .++...+..+.|.+||.+.|-++
T Consensus 52 ~~~r~rGr~gL--~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~~~~~l 101 (134)
T 3ix7_A 52 PLRRAKGRRGL--ETLERLREAAPLEVLETTPKGESVDEKLLFLARDLEAAL 101 (134)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHHTTCEE
T ss_pred hhhHHHHHHHH--HHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHHhCCEE
Confidence 56788888877 477788764432 45677788999999999987654
No 7
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=39.50 E-value=60 Score=27.33 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCC-CCCCCc--------------c-ChHHHHHHHHHHhCcEEcC
Q 020929 20 KRRERRRRAIAAKIFSGLRAEGN-FKLPKH--------------C-DNNEVLKALCAEAGWIVEE 68 (319)
Q Consensus 20 krRERrRRAIaakIfaGLR~~Gn-y~Lpk~--------------~-D~NeVlkaLc~eAGw~ve~ 68 (319)
+++.+|+++++..+..+|+..++ +.+|.. . |..+|.++| .++|..|-.
T Consensus 248 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gi~v~~ 311 (374)
T 3uwc_A 248 ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYL-KDNGIEVKI 311 (374)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHH-HHTTBCCBC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHH-HHCCCcccc
Confidence 44556777888899999999887 666521 1 334555554 566877654
No 8
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=38.85 E-value=60 Score=27.58 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=20.2
Q ss_pred CCCCCccChHHHHHHHHHHhCcEEcC
Q 020929 43 FKLPKHCDNNEVLKALCAEAGWIVEE 68 (319)
Q Consensus 43 y~Lpk~~D~NeVlkaLc~eAGw~ve~ 68 (319)
+.+|+..|..++.+.|.+++|..|-+
T Consensus 327 ~~~~~~~~~~~l~~~L~~~~gi~v~~ 352 (416)
T 3isl_A 327 VEIPGGIDGESVRDMLLAQFGIEIAS 352 (416)
T ss_dssp EECCTTCCHHHHHHHHHHHHCEECBC
T ss_pred EeCCCCCCHHHHHHHHHHhCCEEEec
Confidence 34566667889999998888988873
No 9
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=38.44 E-value=40 Score=28.65 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCc--------------c-ChHHHHHHHHHHhCcEEc
Q 020929 20 KRRERRRRAIAAKIFSGLRAEGNFKLPKH--------------C-DNNEVLKALCAEAGWIVE 67 (319)
Q Consensus 20 krRERrRRAIaakIfaGLR~~Gny~Lpk~--------------~-D~NeVlkaLc~eAGw~ve 67 (319)
+++.+||++++.++..+|+..+ +.+|.. . |..+|.++| ++.|..|-
T Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L-~~~gI~v~ 307 (373)
T 3frk_A 247 DKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYL-NNNGIGTL 307 (373)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEESSHHHHHHHH-HHTTBCCB
T ss_pred HHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHH-HHCCCCcc
Confidence 3455677888999999999887 666532 1 344555555 45587663
No 10
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=36.72 E-value=84 Score=26.52 Aligned_cols=24 Identities=8% Similarity=-0.067 Sum_probs=17.3
Q ss_pred CCCccChHHHHHHHHHHhCcEEcC
Q 020929 45 LPKHCDNNEVLKALCAEAGWIVEE 68 (319)
Q Consensus 45 Lpk~~D~NeVlkaLc~eAGw~ve~ 68 (319)
+|...|..++.+.|.++.|..|-+
T Consensus 322 ~~~~~~~~~~~~~L~~~~gi~v~~ 345 (393)
T 2huf_A 322 VPQGVDWLKAAQYAMKTYLVEISG 345 (393)
T ss_dssp CCTTCCHHHHHHHHHHHHCEECBC
T ss_pred cCCCCCHHHHHHHHHHhCCEEEec
Confidence 333446678888888888998864
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=36.11 E-value=22 Score=30.66 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCC-----CccChHHHHHHHHHHhCcEEcCCCcee
Q 020929 20 KRRERRRRAIAAKIFSGLRAEGNFKLP-----KHCDNNEVLKALCAEAGWIVEEDGTTY 73 (319)
Q Consensus 20 krRERrRRAIaakIfaGLR~~Gny~Lp-----k~~D~NeVlkaLc~eAGw~ve~DGtty 73 (319)
...+|=|..|+.-|-. +|-.+.|. =+-|+.+=+...|.+.||.++ ||..|
T Consensus 171 ~l~~~vR~~~l~~i~k---aY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~-dg~i~ 225 (229)
T 4b0z_A 171 IVMSMVRNEIATCAEK---VYSEIPLSNATSLLYLENTKETEKLAEERGWDIR-DGVIY 225 (229)
T ss_dssp HHHHHHHHHHHHHHHH---HCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEE-TTEEE
T ss_pred HHHHHHHHHHHHHHHH---HcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEe-CCEEe
Confidence 3456667777777754 34322222 245677778889999999997 88776
No 12
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=35.72 E-value=84 Score=23.79 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcCCCCCCCccChHHHHHHHHHHhCcEEcCCCceecC
Q 020929 18 NNKRRERRRRAIAAKIFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRK 75 (319)
Q Consensus 18 nnkrRERrRRAIaakIfaGLR~~Gny~Lpk~~D~NeVlkaLc~eAGw~ve~DGttyr~ 75 (319)
+.+|.+.+|++|-..-..=+..+|--.+ - ++.+|++||. .-||.|+.
T Consensus 13 ~~~r~~~~r~~Il~aA~~lf~~~G~~~~----t----~~~IA~~agv---s~~tlY~~ 59 (216)
T 3qqa_A 13 PSQKVLARQEKIKAVALELFLTKGYQET----S----LSDIIKLSGG---SYSNIYDG 59 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTTC----C----HHHHHHHHTT---SCCSSSCS
T ss_pred CCcccHHHHHHHHHHHHHHHHHcChhhC----C----HHHHHHHhCC---CHHHHHHh
Confidence 4566677777776655555666654332 2 5568888886 45888875
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=35.26 E-value=74 Score=23.52 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=30.3
Q ss_pred ChHHHhhhHHHHHHHHHHHHHHHhhhhhcCCCCCCCccChHHHHH
Q 020929 12 TWKERENNKRRERRRRAIAAKIFSGLRAEGNFKLPKHCDNNEVLK 56 (319)
Q Consensus 12 twrErEnnkrRERrRRAIaakIfaGLR~~Gny~Lpk~~D~NeVlk 56 (319)
+..-|.....|||+|+.--..-|..||.+=-+..-+...--|+|+
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr 53 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILR 53 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHH
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 445577778899999999999999999873321113333445554
No 14
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=33.97 E-value=77 Score=23.31 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=30.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhcCCCCCCCccChHHHHHH
Q 020929 14 KERENNKRRERRRRAIAAKIFSGLRAEGNFKLPKHCDNNEVLKA 57 (319)
Q Consensus 14 rErEnnkrRERrRRAIaakIfaGLR~~Gny~Lpk~~D~NeVlka 57 (319)
.-|.+...+||+||.--..-|.-||.+=-.......+--++|+.
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~ 54 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDK 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHH
Confidence 45777888999999988888888887532211134566666654
No 15
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=33.80 E-value=20 Score=27.04 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=18.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhc
Q 020929 14 KERENNKRRERRRRAIAAKIFSGLRAE 40 (319)
Q Consensus 14 rErEnnkrRERrRRAIaakIfaGLR~~ 40 (319)
.-|++...|||+||.=.-.-|..||..
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~ 30 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRM 30 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHH
Confidence 446777889999998777778888764
No 16
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=33.75 E-value=15 Score=24.70 Aligned_cols=11 Identities=64% Similarity=0.706 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q 020929 23 ERRRRAIAAKI 33 (319)
Q Consensus 23 ERrRRAIaakI 33 (319)
-+|-|+||+||
T Consensus 14 ~~RaRQIaAKi 24 (31)
T 2kxh_B 14 LQRARQIAAKI 24 (31)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 35778999998
No 17
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=33.14 E-value=70 Score=27.87 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=19.0
Q ss_pred CCCCccChHHHHHHHHHHhCcEEcC
Q 020929 44 KLPKHCDNNEVLKALCAEAGWIVEE 68 (319)
Q Consensus 44 ~Lpk~~D~NeVlkaLc~eAGw~ve~ 68 (319)
.+|...|..++.+.|.+++|..|.+
T Consensus 342 ~~~~~~~~~~l~~~l~~~~gi~v~~ 366 (404)
T 2o1b_A 342 ETPPGYDSEQFEQFLVQEKSILVAP 366 (404)
T ss_dssp ECCTTCCHHHHHHHHHHHHCEECEE
T ss_pred eCCCCCCHHHHHHHHHHHCCEEEeC
Confidence 4555556678899988899998864
No 18
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=32.91 E-value=44 Score=27.56 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCcEEcCCC
Q 020929 53 EVLKALCAEAGWIVEEDG 70 (319)
Q Consensus 53 eVlkaLc~eAGw~ve~DG 70 (319)
|--|+|.+||||....||
T Consensus 102 ~kAk~LL~eaG~~~~~~g 119 (258)
T 3lvu_A 102 RRAAQFLEQAGFRIEQGQ 119 (258)
T ss_dssp HHHHHHHHHTTCEEETTE
T ss_pred HHHHHHHHHcCCEeCCCc
Confidence 566789999999976555
No 19
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=31.01 E-value=99 Score=22.75 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=28.5
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhhhcCCCCCCCccChHHHHHH
Q 020929 16 RENNKRRERRRRAIAAKIFSGLRAEGNFKLPKHCDNNEVLKA 57 (319)
Q Consensus 16 rEnnkrRERrRRAIaakIfaGLR~~Gny~Lpk~~D~NeVlka 57 (319)
|.+-..+||+||.--..-|.-||..=-.-.....+-.+||+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~ 44 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDK 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Confidence 678888999999887888888887522111234566666654
No 20
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=28.63 E-value=1.1e+02 Score=22.43 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcCCCCCCCccChHHHHHHHHHHhCcEEcCCCceecC
Q 020929 18 NNKRRERRRRAIAAKIFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRK 75 (319)
Q Consensus 18 nnkrRERrRRAIaakIfaGLR~~Gny~Lpk~~D~NeVlkaLc~eAGw~ve~DGttyr~ 75 (319)
..++++++|++|...-..=+..+|--+ .. ++.+|++||-- -||.|+.
T Consensus 6 ~~~r~~~tr~~Il~aa~~l~~~~G~~~----~t----v~~Ia~~agvs---~~t~Y~~ 52 (177)
T 3kkc_A 6 KDRQIQKTKVAIYNAFISLLQENDYSK----IT----VQDVIGLANVG---RSTFYSH 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCTTT----CC----HHHHHHHHCCC---HHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCChhH----hh----HHHHHHHhCCc---HhhHHHH
Confidence 456667777777665555555555323 22 44577777754 3666664
No 21
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=27.57 E-value=32 Score=27.66 Aligned_cols=43 Identities=23% Similarity=0.151 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCccChHHHHHHHHHHhCcEEcCCCceec
Q 020929 21 RRERRRRAIAAKIFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYR 74 (319)
Q Consensus 21 rRERrRRAIaakIfaGLR~~Gny~Lpk~~D~NeVlkaLc~eAGw~ve~DGttyr 74 (319)
+++++|++|-..-..=+..+|--.+ =++.+|++||. .-||.|+
T Consensus 40 ~~~~~r~~Il~AA~~lf~~~G~~~~--------t~~~IA~~aGv---s~~tlY~ 82 (255)
T 3g1o_A 40 SGDDRELAILATAENLLEDRPLADI--------SVDDLAKGAGI---SRPTFYF 82 (255)
T ss_dssp -CCHHHHHHHHHHHHHHTTSCGGGC--------CHHHHHHHHTC---CHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCccC--------cHHHHHHHhCC---CHHHHHH
Confidence 3444566665544444555553222 14556777775 3356665
No 22
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=27.50 E-value=46 Score=26.43 Aligned_cols=43 Identities=23% Similarity=0.151 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCccChHHHHHHHHHHhCcEEcCCCceec
Q 020929 21 RRERRRRAIAAKIFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYR 74 (319)
Q Consensus 21 rRERrRRAIaakIfaGLR~~Gny~Lpk~~D~NeVlkaLc~eAGw~ve~DGttyr 74 (319)
+++++|++|...-..=+..+|--++ =++.+|++||. .-||.|+
T Consensus 41 ~~~~~r~~Il~aA~~lf~e~G~~~~--------t~~~IA~~aGv---s~~tlY~ 83 (236)
T 3q0w_A 41 SGDDRELAILATAENLLEDRPLADI--------SVDDLAKGAGI---SRPTFYF 83 (236)
T ss_dssp -CHHHHHHHHHHHHHHHHHSCGGGC--------CHHHHHHHHTC---CHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHcCcccC--------CHHHHHHHhCC---cHHHHHH
Confidence 3455566665555555555553232 14556777774 2355555
No 23
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=27.16 E-value=77 Score=29.58 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhhhhcCCCCCC----------CccChHHHHHHHHHHhCcEEcCCCcee
Q 020929 26 RRAIAAKIFSGLRAEGNFKLP----------KHCDNNEVLKALCAEAGWIVEEDGTTY 73 (319)
Q Consensus 26 RRAIaakIfaGLR~~Gny~Lp----------k~~D~NeVlkaLc~eAGw~ve~DGtty 73 (319)
|.+|+..||.|.-.-.+-.+| ..--+-|--|+|.+||||....||-..
T Consensus 297 r~~i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~d~~kAk~LL~eAG~~~~~dG~~~ 354 (528)
T 3ry3_A 297 RQLLADQIMEGHAIPAYTGVQGLPWNNPDSAIKDGDIDKAKQILEQAGWQLNSQGTRE 354 (528)
T ss_dssp HHHHHHHHSTTCEEECSSTTTTSTTSCTTCCCCCSCHHHHHHHHHHTTCEECTTSSEE
T ss_pred HHHHHHHHhcCccccccCCCCCCCCCCCCcCcCCCCHHHHHHHHHHcCCccCCCCEEc
Confidence 667778888875432221122 112234567889999999887777544
No 24
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=26.86 E-value=1.2e+02 Score=25.92 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCC
Q 020929 21 RRERRRRAIAAKIFSGLRAEGNFKLP 46 (319)
Q Consensus 21 rRERrRRAIaakIfaGLR~~Gny~Lp 46 (319)
.+.+||++++.++..+|+..| +.++
T Consensus 247 ~~~~~~~~~~~~~~~~L~~~~-~~~~ 271 (367)
T 3nyt_A 247 EEIALRQKVAAEYDLSLKQVG-IGTP 271 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CCCC
T ss_pred HHHHHHHHHHHHHHHHhccCC-eecc
Confidence 345667778888888888875 5544
No 25
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=25.38 E-value=61 Score=24.27 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCccChHHHHHHHHHHhCcEEcCCCceecC
Q 020929 21 RRERRRRAIAAKIFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRK 75 (319)
Q Consensus 21 rRERrRRAIaakIfaGLR~~Gny~Lpk~~D~NeVlkaLc~eAGw~ve~DGttyr~ 75 (319)
+++++|++|-..-..=+..+|--+ .. ++.+|++||. .-||.|+.
T Consensus 13 ~~~~~r~~Il~aa~~l~~~~G~~~----~t----~~~Ia~~agv---s~~t~Y~~ 56 (211)
T 3him_A 13 GTSKAAARIRAAAIEVFAAKGYGA----TT----TREIAASLDM---SPGAVYPH 56 (211)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSTT----CC----HHHHHHHTTC---CTTSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCc----CC----HHHHHHHhCC---CcChhhhc
Confidence 344555556554444445555322 22 4557888886 56788875
No 26
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=24.27 E-value=83 Score=29.08 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhcCCCCCCCc----------------cChHHHHHHHHHHhCcEE
Q 020929 17 ENNKRRERRRRAIAAKIFSGLRAEGNFKLPKH----------------CDNNEVLKALCAEAGWIV 66 (319)
Q Consensus 17 EnnkrRERrRRAIaakIfaGLR~~Gny~Lpk~----------------~D~NeVlkaLc~eAGw~v 66 (319)
|.-+.+-++..+.|.++..+|+++|++.+-.. .+..+|.++| .+.||+|
T Consensus 338 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L-~~~Gi~v 402 (502)
T 3hbx_A 338 EGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDML-RRYGWIV 402 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHH-HTTTCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHH-HhCCcEE
Confidence 33345556666788899999999987655311 1112555554 6789988
No 27
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=24.08 E-value=1e+02 Score=26.66 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHhCcEEcCCCceecCC
Q 020929 50 DNNEVLKALCAEAGWIVEEDGTTYRKG 76 (319)
Q Consensus 50 D~NeVlkaLc~eAGw~ve~DGttyr~g 76 (319)
|..++.+ ++.+.|..|-+.+...|-.
T Consensus 367 ~~~~~~~-~l~~~gi~v~~g~~~iRis 392 (418)
T 3rq1_A 367 SANAICE-ELKKEHIYVIALANGIRIA 392 (418)
T ss_dssp THHHHHH-HHHHTTEECEECSSEEEEE
T ss_pred CHHHHHH-HHHhCCEEEecCCCCeEEE
Confidence 4556665 5689999998876556643
No 28
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=24.02 E-value=1.1e+02 Score=23.37 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCC
Q 020929 21 RRERRRRAIAAKIFSGLRAEGNFKL 45 (319)
Q Consensus 21 rRERrRRAIaakIfaGLR~~Gny~L 45 (319)
+.+++|++|...-..=+..+| |++
T Consensus 10 ~~~~~r~~Il~aA~~lf~~~G-~~~ 33 (196)
T 2qwt_A 10 DAARNRARVLEVAYDTFAAEG-LGV 33 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-TTS
T ss_pred hhhhHHHHHHHHHHHHHHhcC-CCC
Confidence 345566667665566666777 554
No 29
>4gl8_A Oligopeptide ABC transporter oppaiv; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Borrelia burgdorferi B31}
Probab=23.70 E-value=42 Score=30.86 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCcc----------ChHHHHHHHHHHhCc
Q 020929 26 RRAIAAKIFSGLRAEGNFKLPKHC----------DNNEVLKALCAEAGW 64 (319)
Q Consensus 26 RRAIaakIfaGLR~~Gny~Lpk~~----------D~NeVlkaLc~eAGw 64 (319)
|.+|+..||.|.-.-.+.-+|... -+-|--|+|.+||||
T Consensus 315 r~~i~~~~~~g~~~pa~~~~p~~~~~~~~~~~~~~d~~kAk~LL~eAG~ 363 (529)
T 4gl8_A 315 RKTLTESVLNDSSIPTRRATPDYIDYSYKSNLSLFDAEMAKKLLADAGY 363 (529)
T ss_dssp HHHHHHHTTCSCCEECSCSSCCBTTBCCCCCCCSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCceeCccCCCCCCCccccccccccCHHHHHHHHHHhhh
Confidence 344556777776554444444322 134667889999999
No 30
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=23.63 E-value=1.7e+02 Score=24.72 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHhCcEEcC
Q 020929 50 DNNEVLKALCAEAGWIVEE 68 (319)
Q Consensus 50 D~NeVlkaLc~eAGw~ve~ 68 (319)
|..++.+.|.+++|..|.+
T Consensus 316 ~~~~~~~~l~~~~gi~v~~ 334 (370)
T 2z61_A 316 DGREFAYKLLKEKFVALTP 334 (370)
T ss_dssp CHHHHHHHHHHHHCEECEE
T ss_pred CHHHHHHHHHHhCCEEEeC
Confidence 6678888888899998864
No 31
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=23.14 E-value=1.2e+02 Score=26.32 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=18.1
Q ss_pred CCCCccChHHHHHHHHHHhCcEEcCC
Q 020929 44 KLPKHCDNNEVLKALCAEAGWIVEED 69 (319)
Q Consensus 44 ~Lpk~~D~NeVlkaLc~eAGw~ve~D 69 (319)
.+| ..|..++.+.|.+++|..|-+.
T Consensus 374 ~~~-~~~~~~~~~~l~~~~gi~v~~g 398 (430)
T 2x5f_A 374 KVH-DVDPEALRKHLIDKYSIGVIAL 398 (430)
T ss_dssp EES-SSCHHHHHHHHHHHHCEECEEC
T ss_pred CCC-CCCHHHHHHHHHHhCCEEEecC
Confidence 344 3466778888877799998774
No 32
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=22.81 E-value=1.6e+02 Score=24.92 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=16.0
Q ss_pred cChHHHHHHHHHHhCcEEcC
Q 020929 49 CDNNEVLKALCAEAGWIVEE 68 (319)
Q Consensus 49 ~D~NeVlkaLc~eAGw~ve~ 68 (319)
.+..++.+.|.+++|..|.+
T Consensus 349 ~~~~~~~~~l~~~~gi~v~~ 368 (407)
T 3nra_A 349 VAPAEFVKILRLQAGVVVTP 368 (407)
T ss_dssp SCHHHHHHHHHHHHCEECEE
T ss_pred CCHHHHHHHHHHhCCEEEeC
Confidence 45668888888899998875
No 33
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=22.67 E-value=82 Score=23.50 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCccChHHHHHHHHHHhCcEEcCCCceecC
Q 020929 20 KRRERRRRAIAAKIFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRK 75 (319)
Q Consensus 20 krRERrRRAIaakIfaGLR~~Gny~Lpk~~D~NeVlkaLc~eAGw~ve~DGttyr~ 75 (319)
++++.+|++|-..-..=+..+|--++- ++.+|++||. .-||.|+.
T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~t--------i~~Ia~~agv---s~~t~Y~~ 54 (203)
T 3f1b_A 10 LPRAVREQQMLDAAVDVFSDRGFHETS--------MDAIAAKAEI---SKPMLYLY 54 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCTTTCC--------HHHHHHHTTS---CHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCccccc--------HHHHHHHhCC---chHHHHHH
Confidence 345566666766666666666643322 4457777775 34666663
No 34
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=22.39 E-value=1.6e+02 Score=25.37 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCcEEcCCCceecC
Q 020929 52 NEVLKALCAEAGWIVEEDGTTYRK 75 (319)
Q Consensus 52 NeVlkaLc~eAGw~ve~DGttyr~ 75 (319)
.+.+..++.++|..|-+.|..|-.
T Consensus 357 ~~~~~~~l~~~gv~v~~~g~~~~~ 380 (423)
T 3ez1_A 357 ADRVVKLAEAAGVSLTPAGATYPA 380 (423)
T ss_dssp HHHHHHHHHHTTEECCCTTTTSST
T ss_pred HHHHHHHHHHCCcEEecCcccccC
Confidence 445556778999999887777643
No 35
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=21.99 E-value=1.7e+02 Score=25.18 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=18.2
Q ss_pred CCCCcc---ChHHHHHHHHHHhCcEEcC
Q 020929 44 KLPKHC---DNNEVLKALCAEAGWIVEE 68 (319)
Q Consensus 44 ~Lpk~~---D~NeVlkaLc~eAGw~ve~ 68 (319)
.+|... |..++.+.|.+++|..|-+
T Consensus 334 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 361 (412)
T 2x5d_A 334 KIPEPYAHLGSLEFAKKLLQDAKVSVSP 361 (412)
T ss_dssp ECCTTTGGGCHHHHHHHHHHHHCEECEE
T ss_pred EcCCccCCCCHHHHHHHHHHHCCEEEeC
Confidence 455443 6678888888889998864
No 36
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=21.54 E-value=1.3e+02 Score=25.82 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHhCcEEcCCCceecCC
Q 020929 50 DNNEVLKALCAEAGWIVEEDGTTYRKG 76 (319)
Q Consensus 50 D~NeVlkaLc~eAGw~ve~DGttyr~g 76 (319)
|..++.+ ++.++|..|-+.+...|-.
T Consensus 365 ~~~~~~~-~l~~~gv~v~~g~~~iRis 390 (413)
T 3t18_A 365 KAFDIVK-DLEKENIFTIPSAKGIRVA 390 (413)
T ss_dssp CHHHHHH-HHHHTTEECEECSSEEEEC
T ss_pred CHHHHHH-HHHhCCEEEecCCCceEEE
Confidence 5566665 5589999998876666754
No 37
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=21.54 E-value=81 Score=25.96 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhCcEEcCCC
Q 020929 52 NEVLKALCAEAGWIVEEDG 70 (319)
Q Consensus 52 NeVlkaLc~eAGw~ve~DG 70 (319)
-|--|+|.+||||....||
T Consensus 102 ~~kAk~LL~eaG~~~~~~g 120 (259)
T 3pam_A 102 AQKAWKLLQEAGFTKKNNR 120 (259)
T ss_dssp HHHHHHHHHHTTCEEETTE
T ss_pred HHHHHHHHHHcCCccCCCc
Confidence 3667889999999886554
No 38
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=21.53 E-value=33 Score=25.75 Aligned_cols=12 Identities=42% Similarity=1.215 Sum_probs=10.0
Q ss_pred HHHHHHhCcEEc
Q 020929 56 KALCAEAGWIVE 67 (319)
Q Consensus 56 kaLc~eAGw~ve 67 (319)
+..|++.||+|-
T Consensus 35 ~~YC~~kGwIiP 46 (60)
T 1ng7_A 35 RDYCEKKGWIVN 46 (60)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHHHHCCceec
Confidence 357999999994
No 39
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=21.45 E-value=2.3e+02 Score=23.91 Aligned_cols=20 Identities=20% Similarity=0.111 Sum_probs=16.5
Q ss_pred cChHHHHHHHHHHhCcEEcC
Q 020929 49 CDNNEVLKALCAEAGWIVEE 68 (319)
Q Consensus 49 ~D~NeVlkaLc~eAGw~ve~ 68 (319)
.+..++.+.|++++|..|-+
T Consensus 336 ~~~~~~~~~l~~~~gi~v~~ 355 (396)
T 3jtx_A 336 GDDLAFARNLWQKAAIQVLP 355 (396)
T ss_dssp SCHHHHHHHHHHHHCEECEE
T ss_pred CCHHHHHHHHHHHCCEEEeC
Confidence 46688999999999988855
No 40
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=21.21 E-value=96 Score=23.27 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhcCCCCCCCccChHHHHHHHHHHhCcEEcCCCceec
Q 020929 19 NKRRERRRRAIAAKIFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYR 74 (319)
Q Consensus 19 nkrRERrRRAIaakIfaGLR~~Gny~Lpk~~D~NeVlkaLc~eAGw~ve~DGttyr 74 (319)
.++++++|++|...-..=+..+|--+ .. ++.+|++||.- -||.|+
T Consensus 7 ~~~~~~~r~~Il~aa~~l~~~~G~~~----~t----~~~Ia~~agvs---~~t~Y~ 51 (202)
T 3lwj_A 7 EKQNKERRQKILTCSLDLFIEKGYYN----TS----IRDIIALSEVG---TGTFYN 51 (202)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCTTT----CC----HHHHHHHHCSC---HHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCccc----CC----HHHHHHHhCCC---chhHHH
Confidence 34556666777555555555665222 22 34577777763 355554
No 41
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=21.14 E-value=1.3e+02 Score=22.50 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcCCCCCCCccChHHHHHHHHHHhCcEEcCCCceec
Q 020929 18 NNKRRERRRRAIAAKIFSGLRAEGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYR 74 (319)
Q Consensus 18 nnkrRERrRRAIaakIfaGLR~~Gny~Lpk~~D~NeVlkaLc~eAGw~ve~DGttyr 74 (319)
..++++++|++|-.....=+..+|--++ . ++.+|++||. .-||.|+
T Consensus 8 ~~~~~~~~r~~Il~aa~~l~~~~G~~~~----t----i~~Ia~~agv---s~~t~Y~ 53 (220)
T 3lhq_A 8 TKQQALETRQHILDVALRLFSQQGVSAT----S----LAEIANAAGV---TRGAIYW 53 (220)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHCSTTC----C----HHHHHHHHTC---CHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcccC----C----HHHHHHHhCC---Cceeehh
Confidence 3445566677776555555556653322 2 3446666664 2355555
No 42
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=20.69 E-value=1e+02 Score=28.41 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCc----------cChHHHHHHHHHHhCcEEcCCCceec
Q 020929 26 RRAIAAKIFSGLRAEGNFKLPKH----------CDNNEVLKALCAEAGWIVEEDGTTYR 74 (319)
Q Consensus 26 RRAIaakIfaGLR~~Gny~Lpk~----------~D~NeVlkaLc~eAGw~ve~DGttyr 74 (319)
|.+|+..+|.|.-.-.+-.+|+. .-+-|--|+|.+||||... ||..+.
T Consensus 268 r~~i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~d~~kAk~LL~eaG~~~~-dG~~~~ 325 (496)
T 3t66_A 268 RQEIVDTIMLGYAEVADGPFIPTLPFAPSYEKKETGTDIAIQYLEEAGYTLE-NGQMQK 325 (496)
T ss_dssp HHHHHHHTTTTSEEECSSSSCTTSTTCCCCCCCCCSHHHHHHHHHHHTCEEC-C-CEEE
T ss_pred HHHHHHHHhCCcceecccCcCCCCCcCcCCCcCCCCHHHHHHHHHHcCCCCC-CCcCcc
Confidence 45566677777544333333321 1233567889999999877 776554
No 43
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=20.63 E-value=2.3e+02 Score=23.82 Aligned_cols=21 Identities=14% Similarity=-0.070 Sum_probs=16.3
Q ss_pred ccChHHHHHHHHHHhCcEEcC
Q 020929 48 HCDNNEVLKALCAEAGWIVEE 68 (319)
Q Consensus 48 ~~D~NeVlkaLc~eAGw~ve~ 68 (319)
..|..+|.+.|.++.|..|.+
T Consensus 325 ~~~~~~~~~~L~~~~gi~v~~ 345 (396)
T 2ch1_A 325 GVDWWKVSQYAMNNFSLEVQG 345 (396)
T ss_dssp TCCHHHHHHHHHHHHCBCCBC
T ss_pred CCCHHHHHHHHHHhCCEEEec
Confidence 346678888888888998864
No 44
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=20.42 E-value=42 Score=23.50 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=30.6
Q ss_pred HHHhhhhhc-C----CCCCCCccChHHHHHHHHHH----hCc--EEcCCCceecC
Q 020929 32 KIFSGLRAE-G----NFKLPKHCDNNEVLKALCAE----AGW--IVEEDGTTYRK 75 (319)
Q Consensus 32 kIfaGLR~~-G----ny~Lpk~~D~NeVlkaLc~e----AGw--~ve~DGttyr~ 75 (319)
|.|+.||.+ | .+.++.-+...|+|+.|... .+. .|.-+|..-..
T Consensus 4 ~~fa~lr~~~g~~~~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~ 58 (77)
T 2q5w_D 4 LYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQK 58 (77)
T ss_dssp ECCHHHHHHHTCSEEECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECT
T ss_pred EEeHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCC
Confidence 346666653 2 25667788999999999876 455 67777776554
No 45
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=20.23 E-value=1.2e+02 Score=25.05 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCC-----------------CCccChHHHHHHHHHHhCcEEcC
Q 020929 20 KRRERRRRAIAAKIFSGLRAEGNFKL-----------------PKHCDNNEVLKALCAEAGWIVEE 68 (319)
Q Consensus 20 krRERrRRAIaakIfaGLR~~Gny~L-----------------pk~~D~NeVlkaLc~eAGw~ve~ 68 (319)
+++.++.++.+.++..+|+++.++++ |. |..++.++|.++ |..|-+
T Consensus 265 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~-gi~~~~ 327 (362)
T 3ffr_A 265 DGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--LPGEINKILEPF-DMAVGA 327 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--CHHHHHHHHGGG-TEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--CHHHHHHHHHHC-CeEEec
Confidence 34444556667777777777633322 22 567777777666 998864
No 46
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=20.21 E-value=1.3e+02 Score=26.04 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHhCcEEcCCCcee
Q 020929 50 DNNEVLKALCAEAGWIVEEDGTTY 73 (319)
Q Consensus 50 D~NeVlkaLc~eAGw~ve~DGtty 73 (319)
|..++.+.|++++|..|-+ |..|
T Consensus 369 ~~~~l~~~l~~~~gv~v~~-g~~f 391 (429)
T 1yiz_A 369 KDYRFTKWMTKSVGLQGIP-PSAF 391 (429)
T ss_dssp HHHHHHHHHHHHTSEECBC-GGGG
T ss_pred CHHHHHHHHHHhCCEEEeC-chHh
Confidence 4567888888899998864 4334
Done!