Query 020930
Match_columns 319
No_of_seqs 238 out of 1029
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1161 Protein involved in va 100.0 4.9E-45 1.1E-49 340.4 17.7 244 1-287 1-253 (310)
2 PF03105 SPX: SPX domain; Int 100.0 1.1E-33 2.5E-38 260.4 16.9 182 1-185 1-274 (275)
3 KOG1162 Predicted small molecu 100.0 2.1E-30 4.5E-35 262.0 16.6 190 1-213 1-204 (617)
4 COG5036 SPX domain-containing 99.9 2.8E-23 6.1E-28 199.0 15.2 167 1-214 1-167 (509)
5 COG5408 SPX domain-containing 99.8 5.8E-18 1.3E-22 158.4 13.3 52 135-186 241-292 (296)
6 PF07889 DUF1664: Protein of u 44.4 1.9E+02 0.0041 24.3 10.3 69 77-152 41-109 (126)
7 KOG4466 Component of histone d 34.9 1.4E+02 0.003 28.5 6.8 87 75-169 13-105 (291)
8 KOG1281 Na+/dicarboxylate, Na+ 32.8 17 0.00036 38.1 0.4 47 144-190 7-55 (586)
9 PF10112 Halogen_Hydrol: 5-bro 30.3 3.8E+02 0.0083 23.6 12.5 34 145-178 121-154 (199)
10 PF10146 zf-C4H2: Zinc finger- 28.7 4.7E+02 0.01 24.1 10.5 67 77-157 30-99 (230)
11 PRK12729 fliE flagellar hook-b 26.5 80 0.0017 26.6 3.3 24 259-282 6-29 (127)
12 PF09763 Sec3_C: Exocyst compl 23.3 4.2E+02 0.0092 28.3 9.0 68 150-218 620-695 (701)
13 PF15389 DUF4612: Domain of un 22.5 73 0.0016 26.4 2.3 19 73-91 87-105 (115)
14 PF09763 Sec3_C: Exocyst compl 21.1 1E+03 0.022 25.4 13.0 128 78-208 4-131 (701)
15 KOG4460 Nuclear pore complex, 20.1 1.1E+03 0.023 25.1 14.6 79 83-171 606-687 (741)
No 1
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-45 Score=340.38 Aligned_cols=244 Identities=41% Similarity=0.577 Sum_probs=188.9
Q ss_pred CcchhhHhhhhhhhCchhhhcccCchhhHhHhhcCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCccchhhhHHHH
Q 020930 1 MKFGKEFTTHLKETLPEWRDKFLCYKPLKKLLKHFPAADFQPHSQPTPTVDVVVIIDDDHNRTGSSSSNCWSLDRLQDWF 80 (319)
Q Consensus 1 MKFGK~L~~~ie~~vPEW~~~YIdYK~LKK~IK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~F 80 (319)
|||||.|++ +.+|||+++|||||.|||+||+........ ++ ....+..|
T Consensus 1 MkFGk~L~~---~~l~ew~~~yinYk~LKK~lK~~~~~~~~~---------------~~-------------~~~~e~dF 49 (310)
T KOG1161|consen 1 MKFGKYLKE---ELLPEWKDKYINYKELKKLLKQYSIQTADS---------------SP-------------DSRDESDF 49 (310)
T ss_pred CchhHHHHH---hhhhhHhhhhcCHHHHHHHHHHhccccccC---------------Cc-------------ccchHHHH
Confidence 999999996 579999999999999999999975432110 00 01157789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020930 81 VRILREELEKFNDFYIDKEEEFVIRFQELKDRIERVKEKTGGAFTSESEFSEEMMEIRKDFVTIHGEMVLLKNYSSLNFA 160 (319)
Q Consensus 81 ~~~Ld~ELeKVn~Fy~~ke~el~~rl~~L~~~~~~~~~~~~~~~~s~~~~~e~l~~L~~~~~~l~~el~~L~~y~~LN~t 160 (319)
+++|+.||+||+.||.+|++++.+|++.|+++++.. +..+...+.+..|++++.+|++||++|.+|++||+|
T Consensus 50 v~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~~--------~~~~~~~~~~~~lr~~l~~~~~em~~L~~fs~LN~t 121 (310)
T KOG1161|consen 50 VRLLDAELEKVNGFQLEKESELIIRLKELEEKIDAL--------SLEPPSAEEMKELREELVDFHGEMVLLENFSRLNYT 121 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999998761 011122467889999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCCCCchhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHhhhhHHhhhccCCCCCCccccc--cccc-c
Q 020930 161 GLLKILKKYDKRTGGLLRQPFTQLAVHQPFFTTESLTRLVHECEENLELLFPLEAEVIEATATTPDESKSQL--NAAN-T 237 (319)
Q Consensus 161 gf~KILKK~DK~tg~~l~~~fl~~V~~qpF~~~~~l~~Lv~~~e~~l~~L~~~~~~~~~~~~~~~~~~~~~~--~~~~-~ 237 (319)
||+||||||||+||..++.+|.++|..+|||+++.+.+||.+|+.+++.++|.... ..+...++. ..+ .+.. .
T Consensus 122 Gf~KILKK~DKrtg~~l~~~f~~~l~~~Pf~~~e~~~~Lv~e~~~l~~~l~~~~~~---~~s~~~~~~-~~~~~t~k~wv 197 (310)
T KOG1161|consen 122 GFAKILKKHDKRTGYRLRPYFQVRLLHQPFFTTEQLFRLVYEISILLDLLRPSNRN---GESKESNDS-DFVRRTTKYWV 197 (310)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHhCCCchhhhHHHHHHHHHHHHHHhcccccc---cccccccch-hhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999987654 111111100 000 0000 0
Q ss_pred CCCCCcc---chHH-HH-HHHHH-HHHHHHHHHHhhccCCccCCCCCCccccCCCc
Q 020930 238 LSDNPPN---LRDE-TL-DVYRS-TLAAMKAIKGLRKASSTSNPLSFSSLFESLDD 287 (319)
Q Consensus 238 ~~d~~~~---~~~~-~~-~~~~~-t~aal~~~~~~~~~~st~~~~s~~~~~~~~~~ 287 (319)
.++.... .+.. +. -+|.+ |++||.|+...++++++|+.|++||+..++.+
T Consensus 198 H~~n~~e~k~~~~~~lpvL~~~~~~d~ait~~~~~n~~~~~y~~~l~~~~~a~~~r 253 (310)
T KOG1161|consen 198 HEDNVNEVKTYILRHLPVLVFNSPTDAAITTLYFDNSGSDLYSQFLLKSLLAEALR 253 (310)
T ss_pred CccccchhHHHHhccCcceecCCcchHHHHHHHHhccchHHHHHHhcccccchhhh
Confidence 1111100 0000 01 12333 99999999999999999999999999999885
No 2
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=100.00 E-value=1.1e-33 Score=260.43 Aligned_cols=182 Identities=34% Similarity=0.537 Sum_probs=129.6
Q ss_pred CcchhhHhhhhhhhCchhhhcccCchhhHhHhhcCCCCCCCCCCC--CCC---------------Ccccc-ccccCCCCC
Q 020930 1 MKFGKEFTTHLKETLPEWRDKFLCYKPLKKLLKHFPAADFQPHSQ--PTP---------------TVDVV-VIIDDDHNR 62 (319)
Q Consensus 1 MKFGK~L~~~ie~~vPEW~~~YIdYK~LKK~IK~~~~~~~~~~~~--~~~---------------~~~~~-~~~~~~~~~ 62 (319)
|||||.|+.+ ++|||+++|||||.|||+||.+.......... ... ..... .........
T Consensus 1 MKFgk~L~~~---~vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PF03105_consen 1 MKFGKQLQEN---AVPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLSSISISSSSSSSSRSSSNSFESTSPSSSNTS 77 (275)
T ss_pred CCchHHHHHh---cCHHHHHHhCCHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhccccccccccccccccccccc
Confidence 9999999985 69999999999999999999987654332100 000 00000 000000000
Q ss_pred CCCC-CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------C-----------C
Q 020930 63 TGSS-SSNCWSLDRLQDWFVRILREELEKFNDFYIDKEEEFVIRFQELKDRIERVKEKTG-------G-----------A 123 (319)
Q Consensus 63 ~~~~-~~~~~~~~~~e~~F~~~Ld~ELeKVn~Fy~~ke~el~~rl~~L~~~~~~~~~~~~-------~-----------~ 123 (319)
.... ..........+..||..|+.||+||+.||..++.++..++..|+.++..+..... . .
T Consensus 78 ~~~~~~~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (275)
T PF03105_consen 78 PSSSNSEQNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRSKSSDKYNWNQSSQLSSSSNI 157 (275)
T ss_pred ccccccchhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhcccccc
Confidence 0000 0011123346889999999999999999999999999999999999987743210 0 0
Q ss_pred C---------------C----------------------------------------CchhHHHHHHHHHHHHHHHHHHH
Q 020930 124 F---------------T----------------------------------------SESEFSEEMMEIRKDFVTIHGEM 148 (319)
Q Consensus 124 ~---------------~----------------------------------------s~~~~~e~l~~L~~~~~~l~~el 148 (319)
. . ....+......|+.+|.++|.+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~y~~l 237 (275)
T PF03105_consen 158 FSSSSSASAGSSNSSSASRRSQRFSSESSKQSSNSESDAESDNNRGDRSSDKPFLSSSQKSLKKARKQLKKAFIELYREL 237 (275)
T ss_pred ccCccccccCCccccccccccccchhhhhhccCCCCcccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00012235678899999999999
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHh
Q 020930 149 VLLKNYSSLNFAGLLKILKKYDKRTGGLLRQPFTQLA 185 (319)
Q Consensus 149 ~~L~~y~~LN~tgf~KILKK~DK~tg~~l~~~fl~~V 185 (319)
.+|++|+.||+|||+||||||||++|+.++..||+.|
T Consensus 238 ~~Lk~f~~LN~taf~KIlKK~DK~~~~~~~~~y~~~v 274 (275)
T PF03105_consen 238 ELLKSFVELNRTAFRKILKKYDKVTGTSLSDDYMEEV 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhhcc
Confidence 9999999999999999999999999999999999865
No 3
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.1e-30 Score=262.01 Aligned_cols=190 Identities=31% Similarity=0.444 Sum_probs=155.0
Q ss_pred CcchhhHhhhhhhhCchhhhcccCchhhHhHhhcCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCccchhhhHHHH
Q 020930 1 MKFGKEFTTHLKETLPEWRDKFLCYKPLKKLLKHFPAADFQPHSQPTPTVDVVVIIDDDHNRTGSSSSNCWSLDRLQDWF 80 (319)
Q Consensus 1 MKFGK~L~~~ie~~vPEW~~~YIdYK~LKK~IK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~F 80 (319)
|||||.|..|+ +|||++.|+||+.||++||.+....+... +.... .........+..|
T Consensus 1 MKFgk~~~~q~---~pEW~~ay~dY~~lK~~l~~i~~~~~~~~----~t~~~---------------~~~~~~~~~~~~F 58 (617)
T KOG1162|consen 1 MKFGKELESQL---VPEWRQAYIDYKYLKKLLKEIIENKPSSE----ETTFL---------------MVSEEGGEFEEVF 58 (617)
T ss_pred CcchHHHHHhc---CHHHHHHhhhHHHHHHHHHHHHhcCCCcC----ccHHH---------------HHHHhhhhhHHHH
Confidence 99999999985 99999999999999999999876544311 00000 0001234578899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-CC-----C--ch----hHHHHHHHHHHHHHHHHH
Q 020930 81 VRILREELEKFNDFYIDKEEEFVIRFQELKDRIERVKEKTG--GA-FT-----S--ES----EFSEEMMEIRKDFVTIHG 146 (319)
Q Consensus 81 ~~~Ld~ELeKVn~Fy~~ke~el~~rl~~L~~~~~~~~~~~~--~~-~~-----s--~~----~~~e~l~~L~~~~~~l~~ 146 (319)
|+.||.|++|||.||.+|++|+.++...|+.|+..+.+.+. +. .. + .. .....-.+|+.+|.|+|.
T Consensus 59 f~~ld~el~Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~lk~af~Efy~ 138 (617)
T KOG1162|consen 59 FRRLDEELNKVNKFYKEKVKEAREEAEELNKQLDALIALRVKSRSSVDISDRAARLRGKFTKVLRKAEEKLKLAFSEFYL 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988765431 11 00 0 00 112334578999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHhhh
Q 020930 147 EMVLLKNYSSLNFAGLLKILKKYDKRTGGLLRQPFTQLAVHQPFFTTESLTRLVHECEENLELLFPL 213 (319)
Q Consensus 147 el~~L~~y~~LN~tgf~KILKK~DK~tg~~l~~~fl~~V~~qpF~~~~~l~~Lv~~~e~~l~~L~~~ 213 (319)
-|.+|++|+.||.+||+||+|||||.++... .+|++.|...+|...+.+.+|+.++|+++...|..
T Consensus 139 ~L~llk~y~~lN~~~f~KI~KKyDK~~~~~~-~~~~~~v~~s~f~~~~~i~~l~~~Ve~~f~~~fan 204 (617)
T KOG1162|consen 139 KLRLLKNYQFLNVTAFRKILKKYDKITSRDA-KRYVKMVDKSYFTSSDEITRLMLEVEETFTKHFAN 204 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 99999999999999999999999999999998854
No 4
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.8e-23 Score=198.99 Aligned_cols=167 Identities=30% Similarity=0.469 Sum_probs=132.1
Q ss_pred CcchhhHhhhhhhhCchhhhcccCchhhHhHhhcCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCccchhhhHHHH
Q 020930 1 MKFGKEFTTHLKETLPEWRDKFLCYKPLKKLLKHFPAADFQPHSQPTPTVDVVVIIDDDHNRTGSSSSNCWSLDRLQDWF 80 (319)
Q Consensus 1 MKFGK~L~~~ie~~vPEW~~~YIdYK~LKK~IK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~F 80 (319)
|+||+.|.+.+ +|+|+..||||..||++||.-.... .|. +..+..|
T Consensus 1 M~Fg~~L~~~l---y~p~k~~YinYe~LK~~lK~~~~~~------------------------------~w~-e~dEsdF 46 (509)
T COG5036 1 MRFGKKLKNNL---YPPYKYSYINYENLKKLLKESEEEG------------------------------SWS-ESDESDF 46 (509)
T ss_pred CchhHHHHhcc---CcccccccCCHHHHHHHHhhccccC------------------------------CCc-ccchHHH
Confidence 99999999854 8999999999999999999821110 121 2356789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020930 81 VRILREELEKFNDFYIDKEEEFVIRFQELKDRIERVKEKTGGAFTSESEFSEEMMEIRKDFVTIHGEMVLLKNYSSLNFA 160 (319)
Q Consensus 81 ~~~Ld~ELeKVn~Fy~~ke~el~~rl~~L~~~~~~~~~~~~~~~~s~~~~~e~l~~L~~~~~~l~~el~~L~~y~~LN~t 160 (319)
++.|+.||+||-.|...++.++.+|+..|+++........++. .+.. .+.+.-.+...|.+|..||+|
T Consensus 47 Ve~Ld~eLeKVY~F~~~k~~ev~erl~~leeq~~~~i~~~ds~-----~~~~-------~LeE~L~~v~~l~kF~RLN~t 114 (509)
T COG5036 47 VEELDKELEKVYGFQLSKYSEVMERLRTLEEQTDEAIQELDSD-----NFPK-------ILEEELDTVHDLAKFSRLNFT 114 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhcccCC-----cchh-------HHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999999999999999887443322111 1111 222223377799999999999
Q ss_pred HHHHHHhhhhhhcCCCCchhHHHHhhcCCCCChHHHHHHHHHHHHHHHHHhhhh
Q 020930 161 GLLKILKKYDKRTGGLLRQPFTQLAVHQPFFTTESLTRLVHECEENLELLFPLE 214 (319)
Q Consensus 161 gf~KILKK~DK~tg~~l~~~fl~~V~~qpF~~~~~l~~Lv~~~e~~l~~L~~~~ 214 (319)
||.||+|||||.+|..++.-|-.++...||+ .+.++.|+.++...++.|....
T Consensus 115 GF~KIvKKHDK~~~y~lkpvfqvrLk~~p~~-se~yd~Ll~kis~LY~~lR~~~ 167 (509)
T COG5036 115 GFKKIVKKHDKHTGYSLKPVFQVRLKAKPFF-SEQYDPLLYKISSLYNILRSSL 167 (509)
T ss_pred HHHHHHHhhcCCCCceechhHHHHhccCCcc-hhhhcHHHHHHHHHHHHHHhcC
Confidence 9999999999999998888887799999995 7899999999887766665433
No 5
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.76 E-value=5.8e-18 Score=158.37 Aligned_cols=52 Identities=31% Similarity=0.477 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHhh
Q 020930 135 MEIRKDFVTIHGEMVLLKNYSSLNFAGLLKILKKYDKRTGGLLRQPFTQLAV 186 (319)
Q Consensus 135 ~~L~~~~~~l~~el~~L~~y~~LN~tgf~KILKK~DK~tg~~l~~~fl~~V~ 186 (319)
..+++.++++|..+..|+.|++||+|||+||.|||||..+..++..|++++.
T Consensus 241 ~~lkk~ii~~y~~l~~lksf~eLN~tGf~Ki~KK~DK~l~~~~~~~~~s~~~ 292 (296)
T COG5408 241 SLLKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLHQNLRHEYMSRSV 292 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Confidence 4578899999999999999999999999999999999999999999998643
No 6
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=44.36 E-value=1.9e+02 Score=24.26 Aligned_cols=69 Identities=17% Similarity=0.327 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 020930 77 QDWFVRILREELEKFNDFYIDKEEEFVIRFQELKDRIERVKEKTGGAFTSESEFSEEMMEIRKDFVTIHGEMVLLK 152 (319)
Q Consensus 77 e~~F~~~Ld~ELeKVn~Fy~~ke~el~~rl~~L~~~~~~~~~~~~~~~~s~~~~~e~l~~L~~~~~~l~~el~~L~ 152 (319)
...+...+-.+|+.|..=....-.++..|++.|..++++..+-. ....+++..++..+..+..++..++
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~-------~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEIS-------KQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45788889999999999888888899999999888887764320 0122344455555555555554443
No 7
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=34.91 E-value=1.4e+02 Score=28.54 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHH------HHHHHHHHHHHHHH
Q 020930 75 RLQDWFVRILREELEKFNDFYIDKEEEFVIRFQELKDRIERVKEKTGGAFTSESEFSEEM------MEIRKDFVTIHGEM 148 (319)
Q Consensus 75 ~~e~~F~~~Ld~ELeKVn~Fy~~ke~el~~rl~~L~~~~~~~~~~~~~~~~s~~~~~e~l------~~L~~~~~~l~~el 148 (319)
+.+..|+...+.-..--+.|+..++..|..|+..|+.++..+..... +.+.+.+ .+++..+.++|.++
T Consensus 13 ~~drrr~~~~~e~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~------~eYl~~~~~L~~~~kerl~~aely~e~ 86 (291)
T KOG4466|consen 13 DKDRRRANEESEMSNLEKQFSELKEQMYKDKLAQLQAQLEELGQGTA------PEYLKRVKKLDESRKERLRVAELYREY 86 (291)
T ss_pred cHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567776555555555679999999999999999999988765322 1222222 23445566666665
Q ss_pred HHHHhHHHHHHHHHHHHHhhh
Q 020930 149 VLLKNYSSLNFAGLLKILKKY 169 (319)
Q Consensus 149 ~~L~~y~~LN~tgf~KILKK~ 169 (319)
. ..=+..+|..=.|--||+
T Consensus 87 ~--~e~v~~eYe~E~~aAk~e 105 (291)
T KOG4466|consen 87 C--VERVEREYECEIKAAKKE 105 (291)
T ss_pred H--HHHHHHHHHHHHHHHHHH
Confidence 3 344566666555555543
No 8
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=32.84 E-value=17 Score=38.07 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=36.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcCCC--CchhHHHHhhcCCC
Q 020930 144 IHGEMVLLKNYSSLNFAGLLKILKKYDKRTGGL--LRQPFTQLAVHQPF 190 (319)
Q Consensus 144 l~~el~~L~~y~~LN~tgf~KILKK~DK~tg~~--l~~~fl~~V~~qpF 190 (319)
++..+..+++|..+|++++.|+.||+||..+.. .+--|...|..+.+
T Consensus 7 ~~~~l~~~~~~~~~~~~~ll~~p~~~~~~l~~~~e~~c~y~~~vm~~yw 55 (586)
T KOG1281|consen 7 IVNTLLQYRSLLVLNRTPLLLLPKKLDKLLHSSEEARCAYVILVMAVYW 55 (586)
T ss_pred HHHHHHHhhhhheeehhhhhhcchhhhhhcCCcHHHHHHHHHHHHHHHH
Confidence 344788999999999999999999999999887 34456555554433
No 9
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=30.25 E-value=3.8e+02 Score=23.58 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=25.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcCCCCc
Q 020930 145 HGEMVLLKNYSSLNFAGLLKILKKYDKRTGGLLR 178 (319)
Q Consensus 145 ~~el~~L~~y~~LN~tgf~KILKK~DK~tg~~l~ 178 (319)
-..+...+.|..-=.-+.+|++.||........+
T Consensus 121 P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~~~ 154 (199)
T PF10112_consen 121 PERLTQARKFLYYYLPTAVKLLEKYAELESQPVK 154 (199)
T ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHhccCC
Confidence 3445678888887788999999999876654443
No 10
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=28.73 E-value=4.7e+02 Score=24.14 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 020930 77 QDWFVRILREELEKFNDFYIDKEEEF---VIRFQELKDRIERVKEKTGGAFTSESEFSEEMMEIRKDFVTIHGEMVLLKN 153 (319)
Q Consensus 77 e~~F~~~Ld~ELeKVn~Fy~~ke~el---~~rl~~L~~~~~~~~~~~~~~~~s~~~~~e~l~~L~~~~~~l~~el~~L~~ 153 (319)
+..|+..+..|++.+..=+....+++ ..-++.|+.-+.+. ..+..+.+..+..+|+++.-|+.
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa--------------~~er~~~~~~i~r~~eey~~Lk~ 95 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQA--------------ESERNKRQEKIQRLYEEYKPLKD 95 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667667777776665444443333 22333333333322 23345567778888888888887
Q ss_pred HHHH
Q 020930 154 YSSL 157 (319)
Q Consensus 154 y~~L 157 (319)
.+.-
T Consensus 96 ~in~ 99 (230)
T PF10146_consen 96 EINE 99 (230)
T ss_pred HHHH
Confidence 6653
No 11
>PRK12729 fliE flagellar hook-basal body protein FliE; Provisional
Probab=26.47 E-value=80 Score=26.61 Aligned_cols=24 Identities=13% Similarity=-0.014 Sum_probs=18.5
Q ss_pred HHHHHHHhhccCCccCCCCCCccc
Q 020930 259 AMKAIKGLRKASSTSNPLSFSSLF 282 (319)
Q Consensus 259 al~~~~~~~~~~st~~~~s~~~~~ 282 (319)
|+-.|+=--.|+||+.|++|.|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (127)
T PRK12729 6 NSSLWRIYNSGYSGNKPHPLSPKG 29 (127)
T ss_pred chhHHHHHhcccCCCCCCCCCCCC
Confidence 344566667899999999998863
No 12
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=23.33 E-value=4.2e+02 Score=28.25 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=43.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhhc-CCCCchhHHHHhhcCC-------CCChHHHHHHHHHHHHHHHHHhhhhHHhh
Q 020930 150 LLKNYSSLNFAGLLKILKKYDKRT-GGLLRQPFTQLAVHQP-------FFTTESLTRLVHECEENLELLFPLEAEVI 218 (319)
Q Consensus 150 ~L~~y~~LN~tgf~KILKK~DK~t-g~~l~~~fl~~V~~qp-------F~~~~~l~~Lv~~~e~~l~~L~~~~~~~~ 218 (319)
.+.....-|...|+|||++|+-+- ...+. ...++|..+- -++...+.++.+.|+..+...+.....+.
T Consensus 620 ei~~~~~ySk~~l~kvl~~y~~kev~k~i~-~l~krveKHf~~~~~~~~~~~~Ll~~vW~~~q~~~i~~~~~l~~li 695 (701)
T PF09763_consen 620 EISYQAAYSKQELKKVLKSYPSKEVRKGIE-ALYKRVEKHFSRDADDPSFEEDLLQVVWSAMQEEFIRQYERLETLI 695 (701)
T ss_pred hcccchhccHHHHHHHHHhCChHHHHHHHH-HHHHHHHHHcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567778899999999986442 11111 1122443332 26788999999999998877765554443
No 13
>PF15389 DUF4612: Domain of unknown function (DUF4612)
Probab=22.49 E-value=73 Score=26.38 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 020930 73 LDRLQDWFVRILREELEKF 91 (319)
Q Consensus 73 ~~~~e~~F~~~Ld~ELeKV 91 (319)
+......||++||.-|+|=
T Consensus 87 iS~SQqdFFRMLDeKIekG 105 (115)
T PF15389_consen 87 ISESQQDFFRMLDEKIEKG 105 (115)
T ss_pred hhHHHHHHHHHHHHHHHcC
Confidence 3556789999999999873
No 14
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=21.13 E-value=1e+03 Score=25.37 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020930 78 DWFVRILREELEKFNDFYIDKEEEFVIRFQELKDRIERVKEKTGGAFTSESEFSEEMMEIRKDFVTIHGEMVLLKNYSSL 157 (319)
Q Consensus 78 ~~F~~~Ld~ELeKVn~Fy~~ke~el~~rl~~L~~~~~~~~~~~~~~~~s~~~~~e~l~~L~~~~~~l~~el~~L~~y~~L 157 (319)
..|...|..||.+++.=.....-+...+++.|...++......+..-..-..|...+..++..+..+-..=..| .=..-
T Consensus 4 d~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~L-qvq~~ 82 (701)
T PF09763_consen 4 DAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGL-QVQSA 82 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hhHHH
Confidence 46888899999988887776666666666666666554432100000000012223333344333332222222 34566
Q ss_pred HHHHHHHHHhhhhhhcCCCCchhHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 020930 158 NFAGLLKILKKYDKRTGGLLRQPFTQLAVHQPFFTTESLTRLVHECEENLE 208 (319)
Q Consensus 158 N~tgf~KILKK~DK~tg~~l~~~fl~~V~~qpF~~~~~l~~Lv~~~e~~l~ 208 (319)
|...+.+-|...-... .+....+..+...||-+...|..+...+.....
T Consensus 83 N~k~L~~eL~~Ll~~l--~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~ 131 (701)
T PF09763_consen 83 NQKLLLNELENLLDTL--SIPEEHLEALRNASLSSPDGLEKIEEAAEALYK 131 (701)
T ss_pred HHHHHHHHHHHHHHhc--CCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHH
Confidence 7777777777765554 356667777777888666667765554444433
No 15
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.08 E-value=1.1e+03 Score=25.14 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=43.3
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020930 83 ILREELEKF---NDFYIDKEEEFVIRFQELKDRIERVKEKTGGAFTSESEFSEEMMEIRKDFVTIHGEMVLLKNYSSLNF 159 (319)
Q Consensus 83 ~Ld~ELeKV---n~Fy~~ke~el~~rl~~L~~~~~~~~~~~~~~~~s~~~~~e~l~~L~~~~~~l~~el~~L~~y~~LN~ 159 (319)
.++.|+++| ..|..+.++++..+.+.|...+.++....+...... ...-.++++.+.-+..++..|.+
T Consensus 606 ~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l---~~AErdFk~Elq~~~~~~~~L~~------ 676 (741)
T KOG4460|consen 606 YCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVL---SDAERDFKKELQLIPDQLRHLGN------ 676 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcc---hhHHHHHHHHHHHhHHHHHHHHH------
Confidence 355555554 468888888888888888888877765422111110 11112344444444455555554
Q ss_pred HHHHHHHhhhhh
Q 020930 160 AGLLKILKKYDK 171 (319)
Q Consensus 160 tgf~KILKK~DK 171 (319)
|+--.-+|++|
T Consensus 677 -~iET~~~~~~K 687 (741)
T KOG4460|consen 677 -AIETVTMKKDK 687 (741)
T ss_pred -HHHHHHHHHHH
Confidence 44444555565
Done!