Query 020930
Match_columns 319
No_of_seqs 238 out of 1029
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t98_B Nucleoporin NUP58/NUP45 55.8 65 0.0022 24.4 10.4 29 129-157 48-76 (93)
2 3p8c_E Probable protein brick1 32.1 1.5E+02 0.005 21.7 7.4 41 77-117 18-58 (75)
3 3pp5_A BRK1, protein brick1; t 31.7 1.5E+02 0.005 21.5 7.4 42 76-117 17-58 (73)
4 2l5g_B Putative uncharacterize 29.1 1.1E+02 0.0038 19.8 4.6 27 81-111 11-37 (42)
5 4b6i_A SMA2266; signaling prot 20.5 1.2E+02 0.0041 23.4 4.3 53 150-203 47-100 (102)
6 3sjb_C Golgi to ER traffic pro 19.3 3E+02 0.01 20.8 6.3 43 128-171 46-88 (93)
7 2akf_A Coronin-1A; coiled coil 17.8 1.7E+02 0.0059 17.4 4.8 26 83-112 3-28 (32)
8 3aji_B S6C, proteasome (prosom 17.6 1.4E+02 0.0046 21.1 3.9 46 157-202 1-46 (83)
9 1deq_A Fibrinogen (alpha chain 14.7 7.6E+02 0.026 23.4 9.3 9 258-266 233-241 (390)
10 3zyl_A Phosphatidylinositol-bi 14.5 4.6E+02 0.016 23.3 7.5 74 100-173 169-251 (271)
No 1
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=55.77 E-value=65 Score=24.45 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 020930 129 EFSEEMMEIRKDFVTIHGEMVLLKNYSSL 157 (319)
Q Consensus 129 ~~~e~l~~L~~~~~~l~~el~~L~~y~~L 157 (319)
++...+..+-..|+.+-+.+..|...+.-
T Consensus 48 ~L~~~l~~~h~~FiaLAa~l~~lH~~V~~ 76 (93)
T 3t98_B 48 DLSMAMQKIYQTFVALAAQLQSIHENVKV 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555443
No 2
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=32.12 E-value=1.5e+02 Score=21.66 Aligned_cols=41 Identities=15% Similarity=0.357 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020930 77 QDWFVRILREELEKFNDFYIDKEEEFVIRFQELKDRIERVK 117 (319)
Q Consensus 77 e~~F~~~Ld~ELeKVn~Fy~~ke~el~~rl~~L~~~~~~~~ 117 (319)
.++|...+..-|.++..|.+.=..-+..|+..|..++..+.
T Consensus 18 nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LE 58 (75)
T 3p8c_E 18 NREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALE 58 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999888888888888887776553
No 3
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=31.74 E-value=1.5e+02 Score=21.55 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020930 76 LQDWFVRILREELEKFNDFYIDKEEEFVIRFQELKDRIERVK 117 (319)
Q Consensus 76 ~e~~F~~~Ld~ELeKVn~Fy~~ke~el~~rl~~L~~~~~~~~ 117 (319)
..++|+..+..-|.++..|.+.=..-+..|+..|..++..+.
T Consensus 17 ~nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE 58 (73)
T 3pp5_A 17 EQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILD 58 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999888888888888887776653
No 4
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.10 E-value=1.1e+02 Score=19.83 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020930 81 VRILREELEKFNDFYIDKEEEFVIRFQELKD 111 (319)
Q Consensus 81 ~~~Ld~ELeKVn~Fy~~ke~el~~rl~~L~~ 111 (319)
+..+++||.|+.. +..++..++..|++
T Consensus 11 I~kVdrEI~Kte~----kI~~lqkKlkeLee 37 (42)
T 2l5g_B 11 MDRVDREITMVEQ----QISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4467788887754 55566666666655
No 5
>4b6i_A SMA2266; signaling protein; 1.95A {Serratia marcescens}
Probab=20.49 E-value=1.2e+02 Score=23.42 Aligned_cols=53 Identities=9% Similarity=0.128 Sum_probs=35.2
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhhc-CCCCchhHHHHhhcCCCCChHHHHHHHHHH
Q 020930 150 LLKNYSSLNFAGLLKILKKYDKRT-GGLLRQPFTQLAVHQPFFTTESLTRLVHEC 203 (319)
Q Consensus 150 ~L~~y~~LN~tgf~KILKK~DK~t-g~~l~~~fl~~V~~qpF~~~~~l~~Lv~~~ 203 (319)
+.-+|-.=++++++++.+||.++. +.....+|- .+.-..|+++..|.+|+++.
T Consensus 47 E~~~y~~Ea~~~~~~Li~kyl~~~y~~~~g~~~~-llKCldlyHS~ELd~L~~k~ 100 (102)
T 4b6i_A 47 ELSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYH-TLDCLSLQNASEAETIFERY 100 (102)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCCCCSSSSCCH-HHHHHGGGTCHHHHHHHHHH
T ss_pred HHhcCchhhhHHHHHHHHHHHHhccCCCCCchhH-HHHHHHhhchHHHHHHHHHh
Confidence 444554447889999999998875 333333332 22334578999999888763
No 6
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=19.29 E-value=3e+02 Score=20.81 Aligned_cols=43 Identities=12% Similarity=0.168 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 020930 128 SEFSEEMMEIRKDFVTIHGEMVLLKNYSSLNFAGLLKILKKYDK 171 (319)
Q Consensus 128 ~~~~e~l~~L~~~~~~l~~el~~L~~y~~LN~tgf~KILKK~DK 171 (319)
++| ....+|++.+-.+-.|+..+..=.....++|-+.++|..-
T Consensus 46 DeF-AKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~~~ 88 (93)
T 3sjb_C 46 DNY-AKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKLEH 88 (93)
T ss_dssp TCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344 3567888899999999999999999999999999998753
No 7
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=17.85 E-value=1.7e+02 Score=17.40 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020930 83 ILREELEKFNDFYIDKEEEFVIRFQELKDR 112 (319)
Q Consensus 83 ~Ld~ELeKVn~Fy~~ke~el~~rl~~L~~~ 112 (319)
.|+.|+.+++.-.. +++.|++.|++-
T Consensus 3 rlee~~r~l~~ivq----~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQ----KLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 46777777776433 455555555543
No 8
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=17.56 E-value=1.4e+02 Score=21.11 Aligned_cols=46 Identities=4% Similarity=0.023 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhhhhcCCCCchhHHHHhhcCCCCChHHHHHHHHH
Q 020930 157 LNFAGLLKILKKYDKRTGGLLRQPFTQLAVHQPFFTTESLTRLVHE 202 (319)
Q Consensus 157 LN~tgf~KILKK~DK~tg~~l~~~fl~~V~~qpF~~~~~l~~Lv~~ 202 (319)
|+..+=..||+.|-+.........+-..+....=|+..+|..++.+
T Consensus 1 ~d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~e 46 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQE 46 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456778899999887764322233334455666889999988776
No 9
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=14.70 E-value=7.6e+02 Score=23.39 Aligned_cols=9 Identities=11% Similarity=0.165 Sum_probs=4.7
Q ss_pred HHHHHHHHh
Q 020930 258 AAMKAIKGL 266 (319)
Q Consensus 258 aal~~~~~~ 266 (319)
.||.-|++|
T Consensus 233 ~al~~~~Qm 241 (390)
T 1deq_A 233 KALLEMQQT 241 (390)
T ss_pred HHHHhhhhh
Confidence 355555554
No 10
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=14.52 E-value=4.6e+02 Score=23.30 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCCCchhHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHH---HHhhhh
Q 020930 100 EEFVIRFQELKDRIERVKEKTG-GAFTSESEFSEEMMEIRKDFVTIHGEMV-----LLKNYSSLNFAGLLK---ILKKYD 170 (319)
Q Consensus 100 ~el~~rl~~L~~~~~~~~~~~~-~~~~s~~~~~e~l~~L~~~~~~l~~el~-----~L~~y~~LN~tgf~K---ILKK~D 170 (319)
+++..++..||.++.++..-+. +.-....-....+.-|-+....+|..+. +|.+|-+|.+..-.+ |.|||.
T Consensus 169 ~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~~da~~aleiykrf~ 248 (271)
T 3zyl_A 169 EKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFL 248 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 3567778888888887754211 1000000112234444455555555553 566776665543332 556665
Q ss_pred hhc
Q 020930 171 KRT 173 (319)
Q Consensus 171 K~t 173 (319)
+++
T Consensus 249 ~Q~ 251 (271)
T 3zyl_A 249 TRM 251 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
Done!