Query 020931
Match_columns 319
No_of_seqs 154 out of 265
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 10:17:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vx8_B Autophagy-related prote 100.0 1E-112 3E-117 805.4 9.6 287 26-318 5-291 (292)
2 2dyt_A Autophagy-related prote 100.0 7E-106 2E-110 765.4 7.2 270 6-312 3-311 (312)
3 4ebr_A Ubiquitin-like-conjugat 99.9 3.4E-25 1.2E-29 194.7 3.2 91 197-296 61-158 (169)
4 3vx7_B E2; ubiquitin conjugati 99.7 8.7E-18 3E-22 146.0 2.6 88 198-300 48-145 (152)
5 2lpu_A Kmatg10; autophagy, E2- 99.1 3.7E-14 1.3E-18 122.5 0.0 92 197-301 47-146 (152)
6 1ufn_A Putative nuclear protei 36.6 12 0.00041 29.9 1.3 22 30-53 46-68 (94)
7 2f40_A Hypothetical protein PF 36.4 18 0.00061 28.8 2.2 39 213-251 36-81 (96)
8 1h5p_A Nuclear autoantigen SP1 34.5 14 0.00047 29.6 1.3 21 32-54 44-64 (95)
9 1oqj_A Glucocorticoid modulato 22.1 36 0.0012 27.2 1.6 24 29-54 39-62 (97)
10 3ndq_A Transcription elongatio 19.6 24 0.00081 28.3 0.1 35 4-40 64-98 (108)
No 1
>3vx8_B Autophagy-related protein 3; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-112 Score=805.38 Aligned_cols=287 Identities=83% Similarity=1.332 Sum_probs=170.7
Q ss_pred ccccccccChHHHHHhcccccccCCccccCCCCCCCCCCCCCCCCeeEEeCCCcchhhhhhhhhhhhccCCcccccCCCC
Q 020931 26 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDN 105 (319)
Q Consensus 26 ~F~etG~LTPeEFV~AGD~LV~k~PTW~W~~g~~~k~r~yLP~dKQfLvTRnVPC~~R~~~~~~e~~~~~~~~~~~~~~d 105 (319)
+|++||+|||||||+||||||||||||||++|+++++|+|||+||||||||||||+|||+++.++|..+.++++++++++
T Consensus 5 ~F~etG~lTPEEFV~AGD~LV~kfPTW~W~~g~~~k~~~yLP~dKQfLvTRnVPC~~R~~~~~~~~~~~~e~~~~~~d~d 84 (292)
T 3vx8_B 5 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDN 84 (292)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHCTTCEEECCCGGGCCTTSCTTCSEEEEEEEEECSCTTC-------------------
T ss_pred ceeeCceeCHHHHHhhhhhhhhcCCCccCCCCCccccccCCCCCCeEEEECCcccHHHhhhhhccccccchhhccccCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999766777777777777778
Q ss_pred CceeecCCCCCCCCCCCccCCCCCchhhhhhcccccccccCCCCCCCCCcCCccCcccCCCCCCCccCCCCCCCCCCccc
Q 020931 106 DGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYL 185 (319)
Q Consensus 106 dgWv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dm~~~~~~~~l~~~edD~~~~~~~~~ 185 (319)
+|||.||+..... ....+.+++|+...........+..+ ...++++++|+||++++++++++ ++|++++.+++.
T Consensus 85 dgWv~t~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~d~~ei~Dmdd~~d~~~~~--~dd~a~~~~~~~ 158 (292)
T 3vx8_B 85 DGWLATHGKPKDK--GKEEDNLPSMDALDINEKNTIQSIPT--YFGGEEDDDIPDMEEFDEADNVV--ENDPATLQSTYL 158 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeecCCccccc--cccccccccccccccccccccccccc--ccccccccccCchhhhhcccccc--ccchhhhccccc
Confidence 9999998743221 12344667765443211111111111 12346688999999998877654 566666544333
Q ss_pred ccCCCCCCCcceeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHHHhhhhhccCcceeccCCCCCCCCceEEecCC
Q 020931 186 VAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCR 265 (319)
Q Consensus 186 ~~~~~~~~~i~~~rtYD~~ItYs~~YqvPrLyl~gy~~~g~PLt~ee~~eDi~~d~~~ktVT~e~HP~lg~~~~sIHPCk 265 (319)
...+.++++|+++|+||||||||+|||||||||+||+++|+||++++|||||+++|++|||||++|||||+|+++|||||
T Consensus 159 ~~~~~~~~~i~~~RtYd~~ItYs~~YqtPrLyl~gy~~~g~PL~~ee~~edi~~d~~~ktVT~e~HP~l~~p~~siHPC~ 238 (292)
T 3vx8_B 159 VAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQDHARKTVTIEDHPHLPGKHASVHPCR 238 (292)
T ss_dssp ----------CCCEEEEEEEEEETTTTEEEEEEEEECTTSCBCCGGGGGGTSCCC----CEEEEECSSSSSEEEEECGGG
T ss_pred cccccCcccccceEEEEEEEEEECCCCCCeEEEEEECCCCCcCCHHHHHHHhhhhhhcceEEeecCCccCCceeEEecCC
Confidence 22333456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCccchhHHHHHHHhhhcccceeecccceeeccCCC
Q 020931 266 HGAVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVIPTIEYDYTMDFDLGSSS 318 (319)
Q Consensus 266 ha~vMk~l~~~~~~~~~~~~v~~YL~ifLkFi~sViPTIEyDyT~~~~~~~~~ 318 (319)
||+|||+|++++.++|++++|++||++|||||++|||||||||||+|+|++++
T Consensus 239 ha~vMk~l~~~~~~~~~~~~v~~YL~ifLkFi~sViPTIEyDyT~~~~~~~~~ 291 (292)
T 3vx8_B 239 HGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYDYTMDFDLGSSS 291 (292)
T ss_dssp HHHHHHHHHHHHHHHTCCCCGGGHHHHHHHHHTTTSTTCCCCCCC--------
T ss_pred cHHHHHHHHHHHHhcCCCcChhhHHHHHHHHHhhccCCEEEEeeeeEeccCCC
Confidence 99999999999999999999999999999999999999999999999998775
No 2
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-106 Score=765.42 Aligned_cols=270 Identities=31% Similarity=0.548 Sum_probs=173.1
Q ss_pred HHHHHHhhhhhhcccCCCcCccccccccChHHHHHhcccccccCCccccCCC-CCCCCCCCCCCCCeeEEeCCCcchhhh
Q 020931 6 KFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG-EPSKRKSYLPADKQFLITRNVPCLRRA 84 (319)
Q Consensus 6 ~~~s~~~~~~e~ltpv~~~S~F~etG~LTPeEFV~AGD~LV~k~PTW~W~~g-~~~k~r~yLP~dKQfLvTRnVPC~~R~ 84 (319)
.|+|++++||||||||+|+|+|++||+|||||||+||||||||||||||++| +++|+|+|||+||||||||||||+|||
T Consensus 3 ~~~s~~~~~~e~ltpv~~~S~F~etG~lTPeEFV~AGD~Lv~k~PTW~W~~~~~~~k~~~yLP~dKQfLiTRnVPC~~R~ 82 (312)
T 2dyt_A 3 MIRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDFLPKNKQFLIIRKVPCDKRA 82 (312)
T ss_dssp --------------------CHHHHSCCCHHHHHHHHHHHHHHCTTCEECCCCTTBCCCTTSCTTCSCEEEEEEEECSCT
T ss_pred hHHHHHHHHHHHhcCCCCccccccCcccCHHHHHhcchhhhhhCCccccccCCCcccccCCCCCCceEEEecCcccHHHh
Confidence 5899999999999999999999999999999999999999999999999865 788999999999999999999999999
Q ss_pred hhhhhhhhccCCcccc-------cCCCCCceeecC--CCCCCCCCCCccCCCCCchhhhhhcccccccccCCCCCCCCCc
Q 020931 85 ASVEEEYEGAGGEILV-------DNEDNDGWLATH--GKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEE 155 (319)
Q Consensus 85 ~~~~~e~~~~~~~~~~-------~~~~ddgWv~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (319)
+++ +....+++++ ++++++|||.|| +...........+++++|+ +.+++
T Consensus 83 ~~~---~~~~~~~~~~~~~~~~~~~~~~dgWv~t~~~~~~~~~~~~~~~~~i~~~~-------------------~~~d~ 140 (312)
T 2dyt_A 83 EQC---VEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDID-------------------ELIQD 140 (312)
T ss_dssp TTC------------------------------------------------CHHHH-------------------HHHHH
T ss_pred hhc---cccchhhhhhccccccccccCCCceeeccccccccCcccccccccccccc-------------------ccccc
Confidence 998 3333344333 345678999998 2111000000011111110 00112
Q ss_pred CCccCcccCCCCCCCccCCCCCCCCCCcccccCCCCCCCcceeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHHH
Q 020931 156 EDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILE 235 (319)
Q Consensus 156 ~~i~Dm~~~~~~~~l~~~edD~~~~~~~~~~~~~~~~~~i~~~rtYD~~ItYs~~YqvPrLyl~gy~~~g~PLt~ee~~e 235 (319)
++|+|.+ + ++|++++.... ..+++|.++|+||||||||+|||||||||+||+++|+||++++||+
T Consensus 141 ~~~~d~~------~----~~d~~~~~~~~-----~~~~~~~~~rtYd~~ItYs~sYqvPvLyf~gy~~dg~PL~~~e~~e 205 (312)
T 2dyt_A 141 MEIKEED------E----NDDTEEFNAKG-----GLAKDMAQERYYDLYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFE 205 (312)
T ss_dssp HHHC-----------------------------------CCCCEEEEEEEEEETTTTEEEEEEEEEETTCCBCCHHHHHT
T ss_pred ccccccc------c----cCCHHHhhccc-----cccCCccceEEEEEEEEEecCccCCeEEEEeECCCCCCCCHHHHHH
Confidence 2233211 0 22322221111 1345789999999999999999999999999999999999999999
Q ss_pred hhhhhccCcceeccCCCC--CCCCceEEecCCcHHHHHHHHHHHH---------------------------hCCCCCcc
Q 020931 236 DVSQDHARKTVTIEDHPH--LTGKHASIHPCRHGAVMKKIIDVLV---------------------------SRGVEPEV 286 (319)
Q Consensus 236 Di~~d~~~ktVT~e~HP~--lg~~~~sIHPCkha~vMk~l~~~~~---------------------------~~~~~~~v 286 (319)
||+++|+.|||||++||| +|+|+++|||||||+|||.|++++. +++++|||
T Consensus 206 di~~d~~~ktVT~e~HP~~~lg~p~~sIHPCkta~vMk~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~irv 285 (312)
T 2dyt_A 206 DISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKILLDKVRVVRQRRRKELQEEQELDGVGDWEDLQDDIDDSLRV 285 (312)
T ss_dssp TSCTTTHHHHEEEEECTTBSSCCEEEEECSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTC--------CCCCG
T ss_pred HHHHhhccCceecccCCCccCCCceEEEecCcHHHHHHHHHHHHhhhhhhccccccccccccccccchhcccccCCCcCc
Confidence 999999999999999999 8999999999999999999999887 46778999
Q ss_pred chhHHHHHHHhhhcccceeeccccee
Q 020931 287 DKYLFLFLKFVASVIPTIEYDYTMDF 312 (319)
Q Consensus 287 ~~YL~ifLkFi~sViPTIEyDyT~~~ 312 (319)
+|||++|||||+||||||||||||+|
T Consensus 286 d~YLviFLKFIasViPtIEyD~T~~~ 311 (312)
T 2dyt_A 286 DQYLIVFLKFITSVTPSIQHDYTMEG 311 (312)
T ss_dssp GGHHHHHHHHHHHHSTTBCCTTC---
T ss_pred chhHHHHHHHhcccCCCeEeeecccC
Confidence 99999999999999999999999987
No 3
>4ebr_A Ubiquitin-like-conjugating enzyme ATG10; autophagy, ligase, protein binding, A ATG5, thiolation; 2.70A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.4e-25 Score=194.72 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=79.2
Q ss_pred eeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHH------HHHHhhhhhccCcceec-cCCCCCCCCceEEecCCcHHH
Q 020931 197 RTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTE------LILEDVSQDHARKTVTI-EDHPHLTGKHASIHPCRHGAV 269 (319)
Q Consensus 197 ~~rtYD~~ItYs~~YqvPrLyl~gy~~~g~PLt~e------e~~eDi~~d~~~ktVT~-e~HP~lg~~~~sIHPCkha~v 269 (319)
+.++||+||+||++||||||||+||+++|.|+... +++++++..++.++|+. .+||++|.|+++||||+||++
T Consensus 61 ~~~~id~~I~Ys~sYqVPvL~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~Hp~~g~p~~~iHPC~T~~~ 140 (169)
T 4ebr_A 61 LLNHIELYLTYSKVYNEPLLLLRIWEEKSIDGIPMTKLMLPTDIESLLDVQGKFQLGLDTIINLEGSVWYSFHPCDTSCI 140 (169)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEEEEEEETTEEEEEECCHHHHHHHHTTTTCCCCSSEEEEEETTEEEEECCSSCGGGS
T ss_pred cceEEEEEEEEecccCCcEEEEEEEcCCCCccchhhhhcchHHHHHHhccccceEEEeccCCCCCCCceEEEcCcCcHHH
Confidence 56899999999999999999999999999876654 67888888888887775 479999999999999999999
Q ss_pred HHHHHHHHHhCCCCCccchhHHHHHHH
Q 020931 270 MKKIIDVLVSRGVEPEVDKYLFLFLKF 296 (319)
Q Consensus 270 Mk~l~~~~~~~~~~~~v~~YL~ifLkF 296 (319)
|+.+ ..+..+||+.||++
T Consensus 141 m~~~---------~~~~~~YL~~WlSl 158 (169)
T 4ebr_A 141 VGDQ---------AEFMSTYLRRWVSI 158 (169)
T ss_dssp CCTT---------CTTGGGGHHHHHHH
T ss_pred Hhcc---------ccchHhHHHHHHHH
Confidence 9653 34567999999986
No 4
>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A
Probab=99.67 E-value=8.7e-18 Score=145.99 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=69.5
Q ss_pred eEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHH----------HhhhhhccCcceeccCCCCCCCCceEEecCCcH
Q 020931 198 TRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELIL----------EDVSQDHARKTVTIEDHPHLTGKHASIHPCRHG 267 (319)
Q Consensus 198 ~rtYD~~ItYs~~YqvPrLyl~gy~~~g~PLt~ee~~----------eDi~~d~~~ktVT~e~HP~lg~~~~sIHPCkha 267 (319)
...||+||+||.+||||+|||+.|..+ .+...+++ +++.+-- ..+|++..||+++.||+.||||+|+
T Consensus 48 ~~~~e~~I~Ys~~YqvPvL~fR~~~~~--~~~~ie~~~~~~~~~~~i~~ll~i~-~~sI~L~~hp~l~~~wy~IHPCdT~ 124 (152)
T 3vx7_B 48 DTLLELHIYYDHVYHVPSIKFRLWSLD--TEEDISSLRLLTLSDSELRSILNLG-TFSVTLSTDMEMKSVYYYINNCDTD 124 (152)
T ss_dssp TEEEEEEEEECSSSSSEEEEEEEEEEE--ECSSSEEEEECCCCHHHHHHHSCCT-TCCEEEEECTTSSSEEEEECCTTHH
T ss_pred ceEEEEEEEEeccccCceEEEEeecCC--cccchhhheeccCchhhHHHHhccc-ceeEEeeeccccCCceEEEcCccHH
Confidence 488999999999999999999999876 23322221 2222111 4689999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCccchhHHHHHHHhhhc
Q 020931 268 AVMKKIIDVLVSRGVEPEVDKYLFLFLKFVASV 300 (319)
Q Consensus 268 ~vMk~l~~~~~~~~~~~~v~~YL~ifLkFi~sV 300 (319)
++|+... .+||..|+++.++.
T Consensus 125 eivg~~~------------~nYL~rW~Svyg~~ 145 (152)
T 3vx7_B 125 ANVGSDV------------EHYLTRWISLYIRI 145 (152)
T ss_dssp HHHCSCS------------TTHHHHHHHHHGGG
T ss_pred HHhccch------------hhHHHHHHHHHHHH
Confidence 9998432 59999999998763
No 5
>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR {Kluyveromyces marxianus}
Probab=99.08 E-value=3.7e-14 Score=122.53 Aligned_cols=92 Identities=15% Similarity=0.243 Sum_probs=69.5
Q ss_pred eeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHHHhhhhhc--------cCcceeccCCCCCCCCceEEecCCcHH
Q 020931 197 RTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDH--------ARKTVTIEDHPHLTGKHASIHPCRHGA 268 (319)
Q Consensus 197 ~~rtYD~~ItYs~~YqvPrLyl~gy~~~g~PLt~ee~~eDi~~d~--------~~ktVT~e~HP~lg~~~~sIHPCkha~ 268 (319)
.--++|++|+||++||||+|||+-|..++ -...+.+.--++.++ ..-+|++..||+.+.+|++||||.|++
T Consensus 47 ~~~~iE~~I~Y~~~YqVP~L~fRlwe~~~-~~~i~~~~l~fp~~~~~~~iL~i~~fsi~Ld~~~~~~s~Wy~IHpCdTs~ 125 (152)
T 2lpu_A 47 TDTLLELHIYYDHVYHVPSIKFRLWSLDT-EEDISSLRLLTLSDSELRSILNLGTFSVTLSTDMEMKSVYYYINNCDTDA 125 (152)
Confidence 34678999999999999999999998886 222222211122221 114589999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCccchhHHHHHHHhhhcc
Q 020931 269 VMKKIIDVLVSRGVEPEVDKYLFLFLKFVASVI 301 (319)
Q Consensus 269 vMk~l~~~~~~~~~~~~v~~YL~ifLkFi~sVi 301 (319)
+|+. .+++||..|+++-+..+
T Consensus 126 iVg~------------~~~~YL~rW~SvYg~~~ 146 (152)
T 2lpu_A 126 NVGS------------DVEHYLTRWISLYIRIF 146 (152)
Confidence 9977 34699999999877643
No 6
>1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1
Probab=36.62 E-value=12 Score=29.86 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=18.5
Q ss_pred cc-ccChHHHHHhcccccccCCccc
Q 020931 30 KG-VLSVSEFVLAGDNLVSKCPTWS 53 (319)
Q Consensus 30 tG-~LTPeEFV~AGD~LV~k~PTW~ 53 (319)
.| .+||.||+.-|-..-.| .|+
T Consensus 46 dg~w~TP~EFe~~~g~~~sK--dWK 68 (94)
T 1ufn_A 46 AGDWLTVKEFLNEGGRATSK--DWK 68 (94)
T ss_dssp TCCEECHHHHHHHHTCTTCS--CHH
T ss_pred CCcEEChHHhhhhcCccccc--Ccc
Confidence 35 89999999999988777 676
No 7
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=36.44 E-value=18 Score=28.77 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=31.2
Q ss_pred CceeEEeeecCCC------CCCCHHHHHHhhhhh-ccCcceeccCC
Q 020931 213 TPRVWLTGYDESR------MLLKTELILEDVSQD-HARKTVTIEDH 251 (319)
Q Consensus 213 vPrLyl~gy~~~g------~PLt~ee~~eDi~~d-~~~ktVT~e~H 251 (319)
|=|++++||..+| .-|+-+++++-+-|+ -+.|++|+++.
T Consensus 36 vyRvFiNgYAk~g~ViFDe~kl~~e~lLeelkPEVi~ek~lTv~EL 81 (96)
T 2f40_A 36 FYRVFINPYAKVAEVVIDDSKVNIEELKEKLKGEVIEEKEITLQEL 81 (96)
T ss_dssp BCCCCCCTTTTCCEEECCBCSCSHHHHHHHTTTCSSCCCCCCCSSC
T ss_pred hhhheeccccccceEEECcccCCHHHHHHHcChhhcccccccHHHH
Confidence 3377899999988 478999999988777 45689998864
No 8
>1h5p_A Nuclear autoantigen SP100-B; transcription, DNA binding, SAND domain, KDWK, nuclear protein, alternative splicing; NMR {Homo sapiens} SCOP: d.217.1.1
Probab=34.48 E-value=14 Score=29.59 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=17.9
Q ss_pred ccChHHHHHhcccccccCCcccc
Q 020931 32 VLSVSEFVLAGDNLVSKCPTWSW 54 (319)
Q Consensus 32 ~LTPeEFV~AGD~LV~k~PTW~W 54 (319)
.+||.||+..|-..-.| .|+=
T Consensus 44 w~TP~EFe~~~g~~~sK--dWKr 64 (95)
T 1h5p_A 44 WFTPREFEIEGDRGASK--NWKL 64 (95)
T ss_dssp EECHHHHHHHHTCSTTC--CHHH
T ss_pred EEChHHhhhhcCcccCc--Ccce
Confidence 89999999999987776 7773
No 9
>1oqj_A Glucocorticoid modulatory element binding protein-1; SAND domain, alpha-beta fold, KDWK motif, zinc-binding motif, DNA binding protein; 1.55A {Homo sapiens} SCOP: d.217.1.1
Probab=22.12 E-value=36 Score=27.25 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=18.5
Q ss_pred cccccChHHHHHhcccccccCCcccc
Q 020931 29 EKGVLSVSEFVLAGDNLVSKCPTWSW 54 (319)
Q Consensus 29 etG~LTPeEFV~AGD~LV~k~PTW~W 54 (319)
+...+||.||+..|-.--.| .|+=
T Consensus 39 ~~~w~TP~EFe~~~gk~~sK--dWK~ 62 (97)
T 1oqj_A 39 NDQLISPKHFVHLAGKSTLK--DWKR 62 (97)
T ss_dssp TTEEECHHHHHHHTTCGGGS--CHHH
T ss_pred CCEEEChHHHhhhcCcCCCC--Ccch
Confidence 34689999999998877776 4663
No 10
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=19.56 E-value=24 Score=28.31 Aligned_cols=35 Identities=6% Similarity=0.019 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhhhhcccCCCcCccccccccChHHHHH
Q 020931 4 QQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVL 40 (319)
Q Consensus 4 ~~~~~s~~~~~~e~ltpv~~~S~F~etG~LTPeEFV~ 40 (319)
|.++++.+.++.+-=+|.++..- -.|.|||++||.
T Consensus 64 k~k~Rsl~fNLKd~kNp~Lr~~v--l~G~isp~~lv~ 98 (108)
T 3ndq_A 64 KNRVRSRISNLKDAKNPNLRKNV--LCGNIPPDLFAR 98 (108)
T ss_dssp HHHHHHHHHHHTCTTCHHHHHHH--HHTSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH--HcCCcCHHHHhC
Confidence 45666666666555455444332 369999999985
Done!