Query 020931
Match_columns 319
No_of_seqs 154 out of 265
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 10:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020931.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020931hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2diia1 a.240.1.1 (A:8-55) TFI 52.2 2.2 0.00016 28.4 1.0 12 29-40 31-42 (48)
2 d1oqja_ d.217.1.1 (A:) Glucoco 35.8 6.9 0.0005 29.1 1.6 26 27-54 33-58 (90)
3 d1h5pa_ d.217.1.1 (A:) Nuclear 35.5 6.1 0.00044 29.7 1.3 23 29-53 40-63 (95)
4 d1qk7a_ g.3.6.2 (A:) Lectin SH 29.3 5.8 0.00042 23.9 0.2 6 50-55 21-26 (32)
5 d1ufna_ d.217.1.1 (A:) Putativ 22.1 14 0.00099 27.6 1.1 20 32-53 49-68 (94)
6 d1wyha1 g.39.1.3 (A:35-66) Fou 21.9 6.9 0.0005 23.9 -0.5 21 59-82 8-28 (32)
7 d1qcrd2 a.3.1.3 (D:167-195) Cy 21.7 25 0.0018 20.9 2.0 17 223-239 6-22 (29)
8 d1wlza1 a.39.1.7 (A:229-311) D 21.4 24 0.0018 23.8 2.4 35 3-41 11-45 (83)
9 d2pjua1 c.92.3.1 (A:11-196) Pr 16.6 27 0.002 28.3 1.9 24 214-243 2-25 (186)
10 d1snla_ a.39.1.7 (A:) Nucleobi 15.5 19 0.0014 25.5 0.6 21 21-41 73-93 (99)
No 1
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.22 E-value=2.2 Score=28.44 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=10.0
Q ss_pred cccccChHHHHH
Q 020931 29 EKGVLSVSEFVL 40 (319)
Q Consensus 29 etG~LTPeEFV~ 40 (319)
-+|+||+|||-+
T Consensus 31 vs~VitseEFWa 42 (48)
T d2diia1 31 VSQVISAEEFWA 42 (48)
T ss_dssp TTTSSCHHHHHH
T ss_pred HhccccHHHHHH
Confidence 479999999954
No 2
>d1oqja_ d.217.1.1 (A:) Glucocorticoid modulatory element binding protein-1 (Gmeb1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.83 E-value=6.9 Score=29.12 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=20.5
Q ss_pred cccccccChHHHHHhcccccccCCcccc
Q 020931 27 FKEKGVLSVSEFVLAGDNLVSKCPTWSW 54 (319)
Q Consensus 27 F~etG~LTPeEFV~AGD~LV~k~PTW~W 54 (319)
..+...+||.||+.-|..--.| .|+=
T Consensus 33 ~~~g~w~TP~EFe~~~gk~~sK--~WK~ 58 (90)
T d1oqja_ 33 KFNDQLISPKHFVHLAGKSTLK--DWKR 58 (90)
T ss_dssp EETTEEECHHHHHHHTTCGGGS--CHHH
T ss_pred eECCEEECHHHHhhhcCccccC--CCch
Confidence 3355789999999999988777 6763
No 3
>d1h5pa_ d.217.1.1 (A:) Nuclear autoantigen Sp100b {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.50 E-value=6.1 Score=29.73 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=18.2
Q ss_pred ccc-ccChHHHHHhcccccccCCccc
Q 020931 29 EKG-VLSVSEFVLAGDNLVSKCPTWS 53 (319)
Q Consensus 29 etG-~LTPeEFV~AGD~LV~k~PTW~ 53 (319)
+.| .+||.||+.-|...-.| .|+
T Consensus 40 ~~g~w~TP~EFe~~~Gk~~sK--dWK 63 (95)
T d1h5pa_ 40 EDKKWFTPREFEIEGDRGASK--NWK 63 (95)
T ss_dssp TTTEEECHHHHHHHHTCSTTC--CHH
T ss_pred CCCcEeCHHHHhhccCCcccC--CCc
Confidence 345 89999999999876665 676
No 4
>d1qk7a_ g.3.6.2 (A:) Lectin SHL-I {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=29.33 E-value=5.8 Score=23.88 Aligned_cols=6 Identities=50% Similarity=1.503 Sum_probs=5.3
Q ss_pred CccccC
Q 020931 50 PTWSWE 55 (319)
Q Consensus 50 PTW~W~ 55 (319)
|||+|.
T Consensus 21 ~twkwc 26 (32)
T d1qk7a_ 21 RTWKWC 26 (32)
T ss_dssp SSSCBE
T ss_pred Cceeee
Confidence 799996
No 5
>d1ufna_ d.217.1.1 (A:) Putative nuclear protein homolog 5830484a20rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.05 E-value=14 Score=27.61 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=15.6
Q ss_pred ccChHHHHHhcccccccCCccc
Q 020931 32 VLSVSEFVLAGDNLVSKCPTWS 53 (319)
Q Consensus 32 ~LTPeEFV~AGD~LV~k~PTW~ 53 (319)
.+||.||+..|..--.| .|+
T Consensus 49 w~TP~eFe~~~gk~~~K--~WK 68 (94)
T d1ufna_ 49 WLTVKEFLNEGGRATSK--DWK 68 (94)
T ss_dssp EECHHHHHHHHTCTTCS--CHH
T ss_pred EECHHHHHHhcCccccC--CCc
Confidence 79999999998855444 565
No 6
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.86 E-value=6.9 Score=23.91 Aligned_cols=21 Identities=29% Similarity=0.702 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCeeEEeCCCcchh
Q 020931 59 PSKRKSYLPADKQFLITRNVPCLR 82 (319)
Q Consensus 59 ~~k~r~yLP~dKQfLvTRnVPC~~ 82 (319)
|=..|+|+|++-++.. ||||.
T Consensus 8 PIGtkSFip~~~~~yC---vpCYE 28 (32)
T d1wyha1 8 PLGSRSFVPDKGAHYC---VPCYE 28 (32)
T ss_dssp BTTTSCEEEETTEEEE---HHHHH
T ss_pred cccccccccCCCcEEE---Eeccc
Confidence 4567899999999874 78885
No 7
>d1qcrd2 a.3.1.3 (D:167-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.67 E-value=25 Score=20.87 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=15.0
Q ss_pred CCCCCCCHHHHHHhhhh
Q 020931 223 ESRMLLKTELILEDVSQ 239 (319)
Q Consensus 223 ~~g~PLt~ee~~eDi~~ 239 (319)
.+|.|-+++||-.||..
T Consensus 6 ~DGt~at~~q~a~DV~~ 22 (29)
T d1qcrd2 6 DDGTPATMSQVAKDVCT 22 (29)
T ss_pred CCCCcCcHHHHHHHHHH
Confidence 57999999999999864
No 8
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.38 E-value=24 Score=23.80 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=22.7
Q ss_pred hHHHHHHHHhhhhhhcccCCCcCccccccccChHHHHHh
Q 020931 3 LQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLA 41 (319)
Q Consensus 3 ~~~~~~s~~~~~~e~ltpv~~~S~F~etG~LTPeEFV~A 41 (319)
|+..+.+.+..+++.+.-.- -..+|.||.+||.++
T Consensus 11 l~~~i~~~~~~l~~~F~~~D----~~~~G~i~~~ef~~~ 45 (83)
T d1wlza1 11 LHKAVTSHYHAITQEFENFD----TMKTNTISREEFRAI 45 (83)
T ss_dssp HHHHHHHTHHHHHHHHHHHC----TTCSSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHC----CCCCceEChhHHHHH
Confidence 45566666666666553332 235899999999875
No 9
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=16.60 E-value=27 Score=28.29 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.4
Q ss_pred ceeEEeeecCCCCCCCHHHHHHhhhhhccC
Q 020931 214 PRVWLTGYDESRMLLKTELILEDVSQDHAR 243 (319)
Q Consensus 214 PrLyl~gy~~~g~PLt~ee~~eDi~~d~~~ 243 (319)
||+|++|+.. +-+.+++|.++|..
T Consensus 2 p~i~~~~~sr------L~~l~~~i~~ey~~ 25 (186)
T d2pjua1 2 PVIWTVSVTR------LFELFRDISLEFDH 25 (186)
T ss_dssp CEEEEECCHH------HHHHHHHHHTTTTT
T ss_pred CEEEEEEHHH------HHHHHHHHHHHhcC
Confidence 9999999865 67889999998765
No 10
>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.51 E-value=19 Score=25.45 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=16.5
Q ss_pred CCCcCccccccccChHHHHHh
Q 020931 21 HRTVSAFKEKGVLSVSEFVLA 41 (319)
Q Consensus 21 v~~~S~F~etG~LTPeEFV~A 41 (319)
+.+.-..-..|.||-+||++|
T Consensus 73 ~~~~~D~d~DG~Is~~EF~~~ 93 (99)
T d1snla_ 73 VMKNVDTNQDRLVTLEEFLAS 93 (99)
T ss_dssp HHHHTCSSCSSEEEHHHHHHH
T ss_pred HHHHcCCCCCCcCcHHHHHHH
Confidence 334556678899999999986
Done!