BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020932
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 125/259 (48%), Gaps = 14/259 (5%)
Query: 55 QNLAVKQQELVIPNKYGERLVGVLHD--AESSEIVVLCHGFRSTKDDPSMVNLAVALQNE 112
+NL + + + G +LVG + E ++ ++ HGF + ++ + +A +L++E
Sbjct: 15 ENLYFQGMATITLERDGLQLVGTREEPFGEIYDMAIIFHGFTANRNTSLLREIANSLRDE 74
Query: 113 GISAFRFDFAGNGESEGSFQYGNYWREADDLRAVVQYFCGANRAVGAIL-GHSKGGSVVL 171
I++ RFDF G+G+S+G F+ E +D A++ Y L GHS+GG V
Sbjct: 75 NIASVRFDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHSQGGVVAS 134
Query: 172 LYASKYND-IRTFVNVSGRYDLKGGIEDRLGKDYMEKIMQDGFIDVKNKTGDVEYR-VTE 229
+ A Y D I+ V ++ LKG D +E Q + + + ++ +T
Sbjct: 135 MLAGLYPDLIKKVVLLAPAATLKG--------DALEGNTQGVTYNPDHIPDRLPFKDLTL 186
Query: 230 ESLMDRLNTNMHDACLQIDMECSVLTIHGSSDKIIPLQDAHEFDKIIPNHKLHVVEGANH 289
R+ + + V IHG+ D ++ + ++D+I N LH++EGA+H
Sbjct: 187 GGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHLIEGADH 246
Query: 290 GYTN-HQAELVSVVLDFVK 307
+++ +Q V++ DF++
Sbjct: 247 CFSDSYQKNAVNLTTDFLQ 265
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 125/259 (48%), Gaps = 14/259 (5%)
Query: 55 QNLAVKQQELVIPNKYGERLVGVLHD--AESSEIVVLCHGFRSTKDDPSMVNLAVALQNE 112
+NL + + + G +LVG + E ++ ++ HGF + ++ + +A +L++E
Sbjct: 15 ENLYFQGMATITLERDGLQLVGTREEPFGEIYDMAIIFHGFTANRNTSLLREIANSLRDE 74
Query: 113 GISAFRFDFAGNGESEGSFQYGNYWREADDLRAVVQYFCGANRAVGAIL-GHSKGGSVVL 171
I++ RFDF G+G+S+G F+ E +D A++ Y L GH++GG V
Sbjct: 75 NIASVRFDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVAS 134
Query: 172 LYASKYND-IRTFVNVSGRYDLKGGIEDRLGKDYMEKIMQDGFIDVKNKTGDVEYR-VTE 229
+ A Y D I+ V ++ LKG D +E Q + + + ++ +T
Sbjct: 135 MLAGLYPDLIKKVVLLAPAATLKG--------DALEGNTQGVTYNPDHIPDRLPFKDLTL 186
Query: 230 ESLMDRLNTNMHDACLQIDMECSVLTIHGSSDKIIPLQDAHEFDKIIPNHKLHVVEGANH 289
R+ + + V IHG+ D ++ + ++D+I N LH++EGA+H
Sbjct: 187 GGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHLIEGADH 246
Query: 290 GYTN-HQAELVSVVLDFVK 307
+++ +Q V++ DF++
Sbjct: 247 CFSDSYQKNAVNLTTDFLQ 265
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 125/259 (48%), Gaps = 14/259 (5%)
Query: 55 QNLAVKQQELVIPNKYGERLVGVLHD--AESSEIVVLCHGFRSTKDDPSMVNLAVALQNE 112
+NL + + + G +LVG + E ++ ++ HGF + ++ + +A +L++E
Sbjct: 15 ENLYFQGMATITLERDGLQLVGTREEPFGEIYDMAIIFHGFTANRNTSLLREIANSLRDE 74
Query: 113 GISAFRFDFAGNGESEGSFQYGNYWREADDLRAVVQYFCGANRAVGAIL-GHSKGGSVVL 171
I++ RFDF G+G+S+G F+ E +D A++ Y L GH++GG V
Sbjct: 75 NIASVRFDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVAS 134
Query: 172 LYASKYND-IRTFVNVSGRYDLKGGIEDRLGKDYMEKIMQDGFIDVKNKTGDVEYR-VTE 229
+ A Y D I+ V ++ LKG D +E Q + + + ++ +T
Sbjct: 135 MLAGLYPDLIKKVVLLAPAATLKG--------DALEGNTQGVTYNPDHIPDRLPFKDLTL 186
Query: 230 ESLMDRLNTNMHDACLQIDMECSVLTIHGSSDKIIPLQDAHEFDKIIPNHKLHVVEGANH 289
R+ + + V IHG+ D ++ + ++D+I N LH++EGA+H
Sbjct: 187 GGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHLIEGADH 246
Query: 290 GYTN-HQAELVSVVLDFVK 307
+++ +Q V++ DF++
Sbjct: 247 CFSDSYQKNAVNLTTDFLQ 265
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 101/237 (42%), Gaps = 22/237 (9%)
Query: 79 HDAESSEIVVLCHGFRSTKDDPSMVNLAVALQNEGISAFRFDFAGNGESEGSFQYGNYWR 138
++ E + ++ HGF ++ +V + L G++ R D G+G+S+G F+ ++
Sbjct: 22 NNPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFK 81
Query: 139 EADDLRAVVQYFCGANRAVGAIL-GHSKGGSVVLLYASKYND-IRTFVNVSGRYDLK--G 194
++ AVV Y + + GHS+GG V+L A+ D I+ + +S +
Sbjct: 82 WLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIA 141
Query: 195 GIEDRLGKDYMEKIMQDGF--IDVKNKTGD---VEYRVTEESLMDRLNTNMHDACLQIDM 249
+ LG + + + D D + G+ V + E +D+
Sbjct: 142 RTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTK----------- 190
Query: 250 ECSVLTIHGSSDKIIPLQDAHEFDKIIPNHKLHVVEGANHGYTNHQAELVSVVLDFV 306
VL +HG D+ +P + + F K N KL + G H Y +H + V +F+
Sbjct: 191 --PVLIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGDTHCYDHHLELVTEAVKEFM 245
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 55/226 (24%)
Query: 87 VVLCHGFRSTKDDPSMVNLAVALQNEGISAFRFDFAGNGESEGSFQYGNYWREADDLRAV 146
+ L HG+ T D +L G + + D+ G G S S +YG + DL+
Sbjct: 30 IALFHGYSFTSXDWDKADLFNNYSKIGYNVYAPDYPGFGRSASSEKYGI---DRGDLKHA 86
Query: 147 VQYFCGANRAVGA----ILGHSKGGSVVLLYASKYNDIRTFVNVSGRYDLKGGIEDRLGK 202
++ +A G I G S GG V+ +Y DI
Sbjct: 87 AEFIRDYLKANGVARSVIXGASXGGGXVIXTTLQYPDI---------------------- 124
Query: 203 DYMEKIMQDGFIDVKNKTGDVEYRVTEESLMDRLNTNMHDACLQIDMECSVLTIHGSSDK 262
++ I+ V++ GD + ++ +++L+ + GS D
Sbjct: 125 --VDGIIAVAPAWVESLKGDXK-KIRQKTLL----------------------VWGSKDH 159
Query: 263 IIPLQDAHEFDKIIPNHKLHVVEGANHG-YTNHQAELVSVVLDFVK 307
++P+ + E+ II +L +VEG+ H Y E V + +DF++
Sbjct: 160 VVPIALSKEYASIISGSRLEIVEGSGHPVYIEKPEEFVRITVDFLR 205
>pdb|2FUK|A Chain A, Crystal Structure Of Xc6422 From Xanthomonas Campestris: A
Member Of AB SERINE HYDROLASE WITHOUT LID AT 1.6
Resolution
Length = 220
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 106 AVALQNEGISAFRFDFAGNGESEGSFQYGNYWREADDLRAVVQYFCGANRAVGAILGHSK 165
A AL+ GI+ RF+F G S GSF +G+ E DDLRAV ++ L
Sbjct: 62 ARALRELGITVVRFNFRSVGTSAGSFDHGD--GEQDDLRAVAEWVRAQRPTDTLWLAGFS 119
Query: 166 GGSVVLLYASKYNDIRTFVNV---SGRYDLK 193
G+ V L A+ + + +++ +GR+D
Sbjct: 120 FGAYVSLRAAAALEPQVLISIAPPAGRWDFS 150
>pdb|3LLC|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_002548124.1)
From Agrobacterium Vitis S4 At 1.80 A Resolution
Length = 270
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 18/202 (8%)
Query: 104 NLAVALQNEGISAFRFDFAGNGESEGSFQYGNYWREADDLRAVVQYFCGANRAVGAILGH 163
+LA +L G+ A RFD++G+G S G+F+ G R ++ AV+ +F +A+ ++G
Sbjct: 60 DLAASL---GVGAIRFDYSGHGASGGAFRDGTISRWLEEALAVLDHFK-PEKAI--LVGS 113
Query: 164 SKGGSVVL-----LYASKYN--DIRTFVNVSGRYDLKGG-IEDRLGKDYMEKIMQDGFID 215
S GG + L L A N + V ++ D IE LG ++ ++G+ +
Sbjct: 114 SXGGWIALRLIQELKARHDNPTQVSGXVLIAPAPDFTSDLIEPLLGDRERAELAENGYFE 173
Query: 216 VKNKTGDVEYRVTEESLMDRLNTNMHDACLQIDMECSVLTIHGSSDKIIPLQDAHEFDKI 275
++ E + +L + N A ID C V + G +D +P Q A + +
Sbjct: 174 EVSEYSP-EPNIFTRALXEDGRANRVXAG-XIDTGCPVHILQGXADPDVPYQHALKLVEH 231
Query: 276 IPNHK--LHVVEGANHGYTNHQ 295
+P L +V +H + Q
Sbjct: 232 LPADDVVLTLVRDGDHRLSRPQ 253
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 98/258 (37%), Gaps = 39/258 (15%)
Query: 80 DAESSEIVVLCHGFRSTKDDPSMVNLAVALQNEGISAFRFDFAGNGESEGSFQYGNYWRE 139
D + + VVL HGF + S + AL + G +D G G+S +Y
Sbjct: 19 DHGTGQPVVLIHGFPLSGH--SWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTF 76
Query: 140 ADDLRAVVQYFCGANRAVGAILGHSKGGSVVLLYASKYNDIR----TFVNVSGRYDLK-- 193
A DL V++ + ++G S G V Y S Y R F+ + LK
Sbjct: 77 AADLNTVLETL---DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTD 133
Query: 194 ----GGIEDRLGKDYMEKIMQD------GFI-DVKNKTGDVEYRVTEESLMDRLNTNMH- 241
G + + D GF D N ++ R++EE++ + NT
Sbjct: 134 DNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASG 193
Query: 242 --------DACLQIDMECSV-------LTIHGSSDKIIPLQD-AHEFDKIIPNHKLHVVE 285
D + L +HG+ D+ +P+++ A F K +P+ + VE
Sbjct: 194 GFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVE 253
Query: 286 GANHGYTNHQAELVSVVL 303
GA HG AE V+ L
Sbjct: 254 GAPHGLLWTHAEEVNTAL 271
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 101/258 (39%), Gaps = 39/258 (15%)
Query: 80 DAESSEIVVLCHGFRSTKDDPSMVNLAVALQNEGISAFRFDFAGNGESEGSFQYGNYWRE 139
D + + VVL HGF + S + AL + G +D G G+S +Y
Sbjct: 19 DHGAGQPVVLIHGFPLSGH--SWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTF 76
Query: 140 ADDLRAVVQYFCGANRAVGAILGHSKGGSVVLLYASKYNDIR----TFVNVSGRYDLKG- 194
A DL V++ + ++G S G V Y S Y R F+ + LK
Sbjct: 77 AADLNTVLETL---DLQDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTD 133
Query: 195 -GIEDRLGKDYMEKIMQ----------DGFI-DVKNKTGDVEYRVTEESLMDRLNTNMH- 241
+ K++ + I+ GF D N ++ R++EE++ + NT
Sbjct: 134 DNPDGAAPKEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASG 193
Query: 242 --------DACLQIDMECSV-------LTIHGSSDKIIPLQD-AHEFDKIIPNHKLHVVE 285
D + L +HG+ D+ +P+++ A F K +P+ + VE
Sbjct: 194 GFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVE 253
Query: 286 GANHGYTNHQAELVSVVL 303
GA HG AE V+ L
Sbjct: 254 GAPHGLLWTHAEEVNTAL 271
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 98/258 (37%), Gaps = 39/258 (15%)
Query: 80 DAESSEIVVLCHGFRSTKDDPSMVNLAVALQNEGISAFRFDFAGNGESEGSFQYGNYWRE 139
D + + VVL HGF + S + AL + G +D G G+S +Y
Sbjct: 19 DHGTGQPVVLIHGFPLSGH--SWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTF 76
Query: 140 ADDLRAVVQYFCGANRAVGAILGHSKGGSVVLLYASKYNDIR----TFVNVSGRYDLK-- 193
A DL V++ + ++G S G V Y S Y R F+ + LK
Sbjct: 77 AADLNTVLETL---DLQDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTD 133
Query: 194 ----GGIEDRLGKDYMEKIMQD------GFI-DVKNKTGDVEYRVTEESLMDRLNTNMH- 241
G + + D GF D N ++ R++EE++ + NT
Sbjct: 134 DNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASG 193
Query: 242 --------DACLQIDMECSV-------LTIHGSSDKIIPLQD-AHEFDKIIPNHKLHVVE 285
D + L +HG+ D+ +P+++ A F K +P+ + VE
Sbjct: 194 GFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVE 253
Query: 286 GANHGYTNHQAELVSVVL 303
GA HG AE V+ L
Sbjct: 254 GAPHGLLWTHAEEVNTAL 271
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 94/249 (37%), Gaps = 39/249 (15%)
Query: 87 VVLCHGFRSTKDDPSMVNLAVALQNEGISAFRFDFAGNGESEGSFQYGNYWREADDLRAV 146
VVL HGF + S + AL + G +D G G+S +Y A DL V
Sbjct: 27 VVLIHGFPLSGH--SWERQSAALLDAGYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTV 84
Query: 147 VQYFCGANRAVGAILGHSKGGSVVLLYASKYNDIR----TFVNVSGRYDLK------GGI 196
++ + ++G S G V Y S Y R F+ + LK G
Sbjct: 85 LETL---DLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAA 141
Query: 197 EDRLGKDYMEKIMQD------GFI-DVKNKTGDVEYRVTEESLMDRLNTNMH-------- 241
+ + D GF D N ++ R++EE++ + NT
Sbjct: 142 PQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAA 201
Query: 242 -DACLQIDMECSV-------LTIHGSSDKIIPLQD-AHEFDKIIPNHKLHVVEGANHGYT 292
D + L +HG+ D+ +P+++ A F K +P+ + VEGA HG
Sbjct: 202 APTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 261
Query: 293 NHQAELVSV 301
AE V+
Sbjct: 262 WTHAEEVNT 270
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 82 ESSEIVVLCHGFR---STKDDPSMVNLAVALQNEGISAFRFDFAGNGESEGSFQYGNYWR 138
E S ++CH T ++ + LA AL G+ RF+F G G+S+G +Y N
Sbjct: 29 EKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQG--RYDNGVG 86
Query: 139 EADDLRAVVQY 149
E +DL+AV+++
Sbjct: 87 EVEDLKAVLRW 97
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 50/269 (18%)
Query: 78 LHDAESSEIVVLCHGFRSTKDDPSMVNLAVA-LQNEGISAFRFDFAGNGESEGSFQYGNY 136
D S + V+ HG+ D M + L + G FD G G S+ + +Y
Sbjct: 13 FKDWGSGKPVLFSHGWPL---DADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDY 69
Query: 137 WREADDLRAVVQYFCGANRAVGAILGHSKGGSVVLLYASKYNDIRTFVNVSGRYDLKGGI 196
ADD+ ++++ + ++G S GG V Y +++ R V+G L G +
Sbjct: 70 DTFADDIAQLIEHL---DLKEVTLVGFSMGGGDVARYIARHGSAR----VAGLV-LLGAV 121
Query: 197 EDRLGK--DYMEKIMQDGFIDVKNK-------------------------TGDVEYRVTE 229
G+ DY + + D F K + + V+ + +
Sbjct: 122 TPLFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQ 181
Query: 230 ESLMDRLN------TNMHDACLQIDM---ECSVLTIHGSSDKIIPLQDAHEF-DKIIPNH 279
+L+ L T + + DM + L IHG D+I+P + + ++I
Sbjct: 182 IALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGA 241
Query: 280 KLHVVEGANHGYT-NHQAELVSVVLDFVK 307
+L V + A HG+ H +L +L F+K
Sbjct: 242 ELKVYKDAPHGFAVTHAQQLNEDLLAFLK 270
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 50/269 (18%)
Query: 78 LHDAESSEIVVLCHGFRSTKDDPSMVNLAVA-LQNEGISAFRFDFAGNGESEGSFQYGNY 136
D S + V+ HG+ D M + L + G FD G G S+ + +Y
Sbjct: 13 FKDWGSGKPVLFSHGWLL---DADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDY 69
Query: 137 WREADDLRAVVQYFCGANRAVGAILGHSKGGSVVLLYASKYNDIRTFVNVSGRYDLKGGI 196
ADD+ ++++ + ++G S GG V Y +++ R V+G L G +
Sbjct: 70 DTFADDIAQLIEHL---DLKEVTLVGFSMGGGDVARYIARHGSAR----VAGLV-LLGAV 121
Query: 197 EDRLGK--DYMEKIMQDGFIDVKNK-------------------------TGDVEYRVTE 229
G+ DY + + D F K + + V+ + +
Sbjct: 122 TPLFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQ 181
Query: 230 ESLMDRLN------TNMHDACLQIDM---ECSVLTIHGSSDKIIPLQDAHEF-DKIIPNH 279
+L+ L T + + DM + L IHG D+I+P + + ++I
Sbjct: 182 IALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGA 241
Query: 280 KLHVVEGANHGYT-NHQAELVSVVLDFVK 307
+L V + A HG+ H +L +L F+K
Sbjct: 242 ELKVYKDAPHGFAVTHAQQLNEDLLAFLK 270
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 50/269 (18%)
Query: 78 LHDAESSEIVVLCHGFRSTKDDPSMVNLAVA-LQNEGISAFRFDFAGNGESEGSFQYGNY 136
D S + V+ HG+ D M + L + G FD G G S+ + +Y
Sbjct: 13 FKDWGSGKPVLFSHGWLL---DADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDY 69
Query: 137 WREADDLRAVVQYFCGANRAVGAILGHSKGGSVVLLYASKYNDIRTFVNVSGRYDLKGGI 196
ADD+ ++++ + ++G S GG V Y +++ R V+G L G +
Sbjct: 70 DTFADDIAQLIEHL---DLKEVTLVGFSMGGGDVARYIARHGSAR----VAGLV-LLGAV 121
Query: 197 EDRLGK--DYMEKIMQDGFIDVKNK-------------------------TGDVEYRVTE 229
G+ DY + + D F K + + V+ + +
Sbjct: 122 TPLFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQ 181
Query: 230 ESLMDRLN------TNMHDACLQIDM---ECSVLTIHGSSDKIIPLQDAHEF-DKIIPNH 279
+L+ L T + + DM + L IHG D+I+P + + ++I
Sbjct: 182 IALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGA 241
Query: 280 KLHVVEGANHGYT-NHQAELVSVVLDFVK 307
+L V + A HG+ H +L +L F+K
Sbjct: 242 ELKVYKDAPHGFAVTHAQQLNEDLLAFLK 270
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 107/262 (40%), Gaps = 44/262 (16%)
Query: 84 SEIVVLCHGFRSTKDDPSMVNLAVALQNEGISAFRFDFAGNGESEGSFQYGNYWREADDL 143
++++ HG+ + DD L N+G D G+G S + + ADD
Sbjct: 26 AKVIHFHHGWPLSSDDWDAQLLFFV--NKGFRVVAHDRRGHGRSSQVWDGHDMDHYADDA 83
Query: 144 RAVVQYFCGANRAVGAILGHSKGGSVVLLYASKYND----------------IRTFVNVS 187
AVV+ G + A+ +GHS GG V+ Y +++ + ++T N +
Sbjct: 84 AAVVEKL-GTHGAMH--VGHSTGGGEVVRYIARHGERNVSKAVLISSVPPLMVKTSSNPN 140
Query: 188 GRY-----DLKGGIEDRLGKDYMEKIMQDGFIDVKNKTG-----DVEYRVTEESLMDRLN 237
G D + + + Y++ + G N+ G V Y + +M
Sbjct: 141 GTPKSVFDDFQAHVAANRAQFYLD--VPAGPFYGYNRPGAKPSEGVIYNWWRQGMMGSTK 198
Query: 238 TNMHD--ACLQID-------MECSVLTIHGSSDKIIPLQDAHEFD-KIIPNHKLHVVEGA 287
A Q D + VL IHG D+++P D+ K++ N KL +GA
Sbjct: 199 AQYDGIVAFSQTDFTNDLKGITIPVLVIHGDDDQVVPYADSGVLSAKLVKNGKLITYKGA 258
Query: 288 NHGY-TNHQAELVSVVLDFVKA 308
HG T H ++ + +L+F+++
Sbjct: 259 PHGIPTTHADKVNADLLEFLQS 280
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 50/269 (18%)
Query: 78 LHDAESSEIVVLCHGFRSTKDDPSMVNLAVA-LQNEGISAFRFDFAGNGESEGSFQYGNY 136
D S + V+ HG+ D M + L + G FD G G S+ + +Y
Sbjct: 13 FKDWGSGKPVLFSHGWPL---DADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDY 69
Query: 137 WREADDLRAVVQYFCGANRAVGAILGHSKGGSVVLLYASKYNDIRTFVNVSGRYDLKGGI 196
ADD+ ++++ + ++G S GG V Y +++ R V+G L G +
Sbjct: 70 DTFADDIAQLIEHL---DLKEVTLVGFSMGGGDVARYIARHGSAR----VAGLV-LLGAV 121
Query: 197 EDRLGK--DYMEKIMQDGFIDVKNK-------------------------TGDVEYRVTE 229
G+ DY + + D F K + + V+ + +
Sbjct: 122 TPIFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQ 181
Query: 230 ESLMDRLN------TNMHDACLQIDM---ECSVLTIHGSSDKIIPLQDAHEF-DKIIPNH 279
+L+ L T + + DM + L IHG D+I+P + + ++I
Sbjct: 182 IALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGA 241
Query: 280 KLHVVEGANHGYT-NHQAELVSVVLDFVK 307
+L V + A HG+ H +L +L F+K
Sbjct: 242 ELKVYKDAPHGFAVTHAQQLNEDLLAFLK 270
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 50/269 (18%)
Query: 78 LHDAESSEIVVLCHGFRSTKDDPSMVNLAVA-LQNEGISAFRFDFAGNGESEGSFQYGNY 136
D S + V+ HG+ D M + L + G FD G G S+ + +Y
Sbjct: 13 FKDWGSGKPVLFSHGWIL---DADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDY 69
Query: 137 WREADDLRAVVQYFCGANRAVGAILGHSKGGSVVLLYASKYNDIRTFVNVSGRYDLKGGI 196
ADD+ ++++ + ++G S GG V Y +++ R V+G L G +
Sbjct: 70 DTFADDIAQLIEHL---DLKEVTLVGFSMGGGDVARYIARHGSAR----VAGLV-LLGAV 121
Query: 197 EDRLGK--DYMEKIMQDGFIDVKNK-------------------------TGDVEYRVTE 229
G+ DY + + D F K + + V+ + +
Sbjct: 122 TPLFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQ 181
Query: 230 ESLMDRLN------TNMHDACLQIDM---ECSVLTIHGSSDKIIPLQDAHEF-DKIIPNH 279
+L+ L T + + DM + L IHG D+I+P + + ++I
Sbjct: 182 IALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGA 241
Query: 280 KLHVVEGANHGYT-NHQAELVSVVLDFVK 307
+L V + A HG+ H +L +L F+K
Sbjct: 242 ELKVYKDAPHGFAVTHAQQLNEDLLAFLK 270
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 99/264 (37%), Gaps = 42/264 (15%)
Query: 80 DAESSEIVVLCHGFRSTKDDPSMVNLAVALQNEGISAFRFDFAGNGESEGSFQYGNYWRE 139
D + + VVL HG+ + S AL G +D G G+S ++ Y
Sbjct: 23 DHGTGKPVVLIHGWPLSGR--SWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYEYDTF 80
Query: 140 ADDLRAVVQYFCGANRAVGAILGHSKGGSVVLLYASKYNDIR----TFVNVSGRYDLK-- 193
DL +++ N ++G S GG V Y S Y R F Y K
Sbjct: 81 TSDLHQLLEQLELQNVT---LVGFSXGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSE 137
Query: 194 ----GGIEDRLGKDYMEKIMQD----------GFIDVKNKT-----------GDVEYRVT 228
G ++D + + ++ D GF ++T D+ +
Sbjct: 138 DHPEGALDDATIETFKSGVINDRLAFLDEFTKGFFAAGDRTDLVSESFRLYNWDIAAGAS 197
Query: 229 EESLMDRLNTNMHDACLQIDME---CSVLTIHGSSDKIIPLQDAHEFD-KIIPNHKLHVV 284
+ +D + T + D+E L IHG SD +P + + + + IPN K+ ++
Sbjct: 198 PKGTLDCI-TAFSKTDFRKDLEKFNIPTLIIHGDSDATVPFEYSGKLTHEAIPNSKVALI 256
Query: 285 EGANHGY-TNHQAELVSVVLDFVK 307
+G HG H E +L F+K
Sbjct: 257 KGGPHGLNATHAKEFNEALLLFLK 280
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 253 VLTIHGSSDKIIPLQDAHEFDKIIPNHKLHVVEGANHGY 291
+ +HG D +Q+A + K P +LH+VEGA H Y
Sbjct: 260 AVIVHGRYDMACQVQNAWDLAKAWPEAELHIVEGAGHSY 298
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 249 MECSVLTIHGSSDKIIPLQ-DAHEFDKIIPNHKLHVVEGANHG 290
+ L +HG D+++P+ + +IIPN +L V EG++HG
Sbjct: 211 FDIPTLVVHGDDDQVVPIDATGRKSAQIIPNAELKVYEGSSHG 253
>pdb|3E0X|A Chain A, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
pdb|3E0X|B Chain B, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
Length = 245
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 112 EGISAFRFDFAGNGESEGSFQYGNYWREADDLRAVVQYFCGANRAVGAILGHSKGGSVVL 171
E + D G+GES+G Y + + ++ ++G+S GG++VL
Sbjct: 40 EDYNCILLDLKGHGESKGQCPSTVYGYIDNVANFITNSEVTKHQKNITLIGYSXGGAIVL 99
Query: 172 LYA-SKYNDIRTFVNVSGRYDLKGGIEDRLGKDYMEKIMQD 211
A K ++R V++SG G D+L KD+ EKI +
Sbjct: 100 GVALKKLPNVRKVVSLSG-----GARFDKLDKDFXEKIYHN 135
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
Query: 156 AVGAILGHSKGGSVVLLYASKYNDIRTFVNVSGRYDLKGGIEDRLGKDYMEKIMQDGFID 215
AVG ++G + V Y ++R +++ YD + + D L + E +Q GF
Sbjct: 128 AVGTRFDVTEGLNAVWGYTPSIENMRNLLDIFA-YD-RSLVTDELARLRYEASIQPGF-- 183
Query: 216 VKNKTGDVEYRVTEESLMDRLNTNMHDACLQIDMECSVLTIHGSSDKIIPLQDAHEFDKI 275
++ + + +D L ++ D + L IHG D+++PL + ++
Sbjct: 184 --QESFSSMFPEPRQRWIDALASSDEDIK---TLPNETLIIHGREDQVVPLSSSLRLGEL 238
Query: 276 IPNHKLHVVEGANH 289
I +LHV H
Sbjct: 239 IDRAQLHVFGRCGH 252
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 249 MECSVLTIHGSSDKIIPLQDAHEFD-KIIPNHKLHVVEGANHGYTNHQAELVSV-VLDFV 306
++ VL +HG D+I+P +++ K++PN L +G HG A++++ +L F+
Sbjct: 215 IQQPVLVMHGDDDQIVPYENSGVLSAKLLPNGALKTYKGYPHGMPTTHADVINADLLAFI 274
Query: 307 KA 308
++
Sbjct: 275 RS 276
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 249 MECSVLTIHGSSDKIIPLQDAH-EFDKIIPNHKLHVVEGANHGYTN-HQAELVSVVLDFV 306
++ L +HG +D+++P++ + ++ L + GA HG T+ H+ +L + +L F+
Sbjct: 212 IDVPTLVVHGDADQVVPIEASGIASAALVKGSTLKIYSGAPHGLTDTHKDQLNADLLAFI 271
Query: 307 KA 308
K
Sbjct: 272 KG 273
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 9/134 (6%)
Query: 156 AVGAILGHSKGGSVVLLYASKYNDIRTFVNVSGRYDLKGGIEDRLGKDYMEKIMQDGFID 215
A G ++G + V Y ++R +++ YD + + D L + E +Q GF
Sbjct: 128 AAGTRFDVTEGLNAVWGYTPSIENMRNLLDIFA-YD-RSLVTDELARLRYEASIQPGF-- 183
Query: 216 VKNKTGDVEYRVTEESLMDRLNTNMHDACLQIDMECSVLTIHGSSDKIIPLQDAHEFDKI 275
++ + + +D L ++ D + L IHG D+++PL + ++
Sbjct: 184 --QESFSSMFPEPRQRWIDALASSDEDIK---TLPNETLIIHGREDQVVPLSSSLRLGEL 238
Query: 276 IPNHKLHVVEGANH 289
I +LHV H
Sbjct: 239 IDRAQLHVFGRCGH 252
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 253 VLTIHGSSDKIIPLQ-DAHEFDKIIPNHKLHVVEGANHGYTNHQAELVSVVL 303
L +HG+ D I+P+ A F + +P VEGA HG A+ V+ L
Sbjct: 222 TLILHGTKDNILPIDATARRFHQAVPEADYVEVEGAPHGLLWTHADEVNAAL 273
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 238 TNMHDACLQIDMECSVLTIHGSSDKIIPLQDAH-EFDKIIPNHKLHVVEGANHGYTNHQA 296
T+ D +ID+ VL HG+ D+++P DA + +++ N L EG HG +
Sbjct: 205 TDFTDDLKRIDV--PVLVAHGTDDQVVPYADAAPKSAELLANATLKSYEGLPHGMLSTHP 262
Query: 297 ELVSV-VLDFVKA 308
E+++ +L FVK+
Sbjct: 263 EVLNPDLLAFVKS 275
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 109 LQNEGISAFRFDFAGNGESEG------SFQYGNYWREADDLRAVVQYFCGANRAVGAILG 162
+ EGI+ +D G G SE + YG EA+ LR+ + N V ++G
Sbjct: 51 MTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGV--EEAEALRSKL----FGNEKV-FLMG 103
Query: 163 HSKGGSVVLLYASKYNDIRTFVNVSG 188
S GG++ L YA KY D + VSG
Sbjct: 104 SSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 109 LQNEGISAFRFDFAGNGESEG------SFQYGNYWREADDLRAVVQYFCGANRAVGAILG 162
+ EGI+ +D G G SE + YG EA+ LR+ + N V ++G
Sbjct: 51 MTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGV--EEAEALRSKL----FGNEKV-FLMG 103
Query: 163 HSKGGSVVLLYASKYNDIRTFVNVSG 188
S GG++ L YA KY D + VSG
Sbjct: 104 SSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 109 LQNEGISAFRFDFAGNGESEG------SFQYGNYWREADDLRAVVQYFCGANRAVGAILG 162
+ EGI+ +D G G SE + YG EA+ LR+ + N V ++G
Sbjct: 51 MTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGV--EEAEALRSKL----FGNEKV-FLMG 103
Query: 163 HSKGGSVVLLYASKYNDIRTFVNVSG 188
S GG++ L YA KY D + VSG
Sbjct: 104 SSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 109 LQNEGISAFRFDFAGNGESEG------SFQYGNYWREADDLRAVVQYFCGANRAVGAILG 162
+ EGI+ +D G G SE + YG EA+ LR+ + N V ++G
Sbjct: 51 MTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGV--EEAEALRSKL----FGNEKV-FLMG 103
Query: 163 HSKGGSVVLLYASKYNDIRTFVNVSG 188
S GG++ L YA KY D + VSG
Sbjct: 104 SSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 109 LQNEGISAFRFDFAGNGESEG------SFQYGNYWREADDLRAVVQYFCGANRAVGAILG 162
+ EGI+ +D G G SE + YG EA+ LR+ + N V ++G
Sbjct: 51 MTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGV--EEAEALRSKL----FGNEKV-FLMG 103
Query: 163 HSKGGSVVLLYASKYNDIRTFVNVSG 188
S GG++ L YA KY D + VSG
Sbjct: 104 SSYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|2I3D|A Chain A, Crystal Structure Of Protein Of Unknown Function Atu1826,
A Putative AlphaBETA HYDROLASE FROM AGROBACTERIUM
TUMEFACIENS
pdb|2I3D|B Chain B, Crystal Structure Of Protein Of Unknown Function Atu1826,
A Putative AlphaBETA HYDROLASE FROM AGROBACTERIUM
TUMEFACIENS
Length = 249
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 65 VIPNKYGERLVGVLHDAE--SSEIVVLCHG---FRSTKDDPSMVNLAVALQNEGISAFRF 119
VI N RL G ++ S+ I ++ H F T ++ + L Q G + RF
Sbjct: 26 VIFNGPAGRLEGRYQPSKEKSAPIAIILHPHPQFGGTXNNQIVYQLFYLFQKRGFTTLRF 85
Query: 120 DFAGNGESEGSFQYG 134
+F G S+G F +G
Sbjct: 86 NFRSIGRSQGEFDHG 100
>pdb|1WP6|A Chain A, Crystal Structure Of Maltohexaose-producing Amylase From
Alkalophilic Bacillus Sp.707.
pdb|1WPC|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase
Complexed With Pseudo-Maltononaose
pdb|2D3L|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltopentaose.
pdb|2D3N|A Chain A, Crystal Structure Of Maltohexaose-Producing Amylase From
Bacillus Sp.707 Complexed With Maltohexaose
Length = 485
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 70 YGERLVGVLHDAESSEIVVLCHGFRSTKDDPSMVNLAVALQNEGISAFRFDFAGNGESEG 129
YG+ ++ A+++E+V R+ + +P+ N V + + RFDF G G +
Sbjct: 100 YGDVVMNHKGGADATEMV------RAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHS 153
Query: 130 SFQYGNY------WREADDLRAVVQYFCGANRAVGAILGHSKGGSVVLLYA 174
SF++ Y W ++ L + F G +A + G L+YA
Sbjct: 154 SFKWRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYA 204
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 248 DMECSVLTIHGSSDKIIPLQDAHEFDKIIPNHKLHVVEGANHG-YTNHQAELVSVVLDFV 306
++ L ++G D + Q + E K +PNH++ +++GA H Y + E + +LDF+
Sbjct: 149 SVKTPALIVYGDQDPMG--QTSFEHLKQLPNHRVLIMKGAGHPCYLDKPEEWHTGLLDFL 206
Query: 307 K 307
+
Sbjct: 207 Q 207
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 109 LQNEGISAFRFDFAGNGESEG------SFQYGNYWREADDLRAVVQYFCGANRAVGAILG 162
+ EGI+ +D G G SE + YG EA+ LR+ + N V ++G
Sbjct: 51 MTKEGITVLFYDQFGCGRSEEPDQSKFTIDYGV--EEAEALRSKL----FGNEKV-FLMG 103
Query: 163 HSKGGSVVLLYASKYNDIRTFVNVSG 188
+ GG++ L YA KY D + VSG
Sbjct: 104 SAYGGALALAYAVKYQDHLKGLIVSG 129
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 205 MEKIMQDGFIDVKNKTGDVEYRVTEESLMDRLNTNMHDACLQI----DMECSVLTIHGSS 260
ME+I++ F +V N D E R +E + + + M + + VL HG
Sbjct: 180 MEEIVKSRF-EVAN---DPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQ 235
Query: 261 DKIIPLQDAHEFDKIIPNHKLHVVEGANH 289
D+I+PL + K + + +L V++ H
Sbjct: 236 DRIVPLDTSLYLTKHLKHAELVVLDRCGH 264
>pdb|4FHZ|A Chain A, Crystal Structure Of A Carboxyl Esterase At 2.0 Angstrom
Resolution
Length = 285
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 253 VLTIHGSSDKIIPLQDAHEFDKIIPNHKL----HVVEGANHGYTNHQAELVSVVLDFVKA 308
VL +HG +D ++P D + + HV++G HG + +SV L F+K
Sbjct: 208 VLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMKGTGHGIAP---DGLSVALAFLKE 264
Query: 309 SLK 311
L
Sbjct: 265 RLP 267
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 253 VLTIHGSSDKIIPLQDAHEFDKIIPNHKL----HVVEGANHGYTNHQAELVSVVLDFVKA 308
VL +HG +D ++P D + + HV++G HG + +SV L F+K
Sbjct: 208 VLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMKGTGHGIAP---DGLSVALAFLKE 264
Query: 309 SLK 311
L
Sbjct: 265 RLP 267
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 159 AILGHSKGGSVVLLYASKYNDIRTFVNVSGRYDLKGGIEDRLGKDYMEKIMQDGFIDVKN 218
++LG S GG L+ A+KY ++++ + + D + ++ +G DV
Sbjct: 97 SLLGWSNGGITALIAAAKYP---SYIHKMVIWGANAYVTDE------DSMIYEGIRDVSK 147
Query: 219 KT-----------GDVEYRVTEESLMDRLNTNMH----DACLQI--DMECSVLTIHGSSD 261
+ G + T E +D + H + C + ++C L +HG D
Sbjct: 148 WSERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKD 207
Query: 262 KIIPLQDAHEFDKIIPNHKLHVV-EGANHGYTNHQAELVSVVLDFVK 307
++P A K + +LH++ EG ++ + E + DF++
Sbjct: 208 PLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFLQ 254
>pdb|2DIE|A Chain A, Alkaline Alpha-Amylase Amyk From Bacillus Sp. Ksm-1378
Length = 485
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 56 NLAVKQQELVIPNKYGER--LVGVLHDAESSEI-----VVLCHGFRSTKDDPSMVNLAVA 108
+L Q+ + KYG R L G + +++ I VV+ H + D MVN AV
Sbjct: 65 DLGEFNQKGTVRTKYGTRSQLQGAVTSLKNNGIQVYGDVVMNH--KGGADGTEMVN-AVE 121
Query: 109 L----QNEGISA-------FRFDFAGNGESEGSFQY------GNYWREADDLRAVVQYFC 151
+ +N+ IS +FDF G G + +F++ G W ++ L+ + F
Sbjct: 122 VNRSNRNQEISGEYTIEAWTKFDFPGRGNTHSNFKWRWYHFDGTDWDQSRQLQNKIYKFR 181
Query: 152 GANRAVGAILGHSKGGSVVLLYA-------SKYNDIRTF-VNVSGRYDLKGGIEDRLGKD 203
G +A + G L+YA N++R + V + +L G D + K
Sbjct: 182 GTGKAWDWEVDIENGNYDYLMYADIDMDHPEVINELRNWGVWYTNTLNLDGFRIDAV-KH 240
Query: 204 YMEKIMQDGFIDVKNKTGDVEYRVTE 229
+D V+N TG + V E
Sbjct: 241 IKYSYTRDWLTHVRNTTGKPMFAVAE 266
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 249 MECSVLTIHGSSDKIIPLQDAHEFDKIIPNHKLHVVEGANH-GYTNHQAELVSVVLDFVK 307
++ L + G DK++P++ A++F +I + +++ H H + + L F+
Sbjct: 221 VQVPTLVVQGKDDKVVPVETAYKFLDLIDDSWGYIIPHCGHWAMIEHPEDFANATLSFL- 279
Query: 308 ASLKQD 313
SL+ D
Sbjct: 280 -SLRVD 284
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 27/167 (16%)
Query: 159 AILGHSKGGSVVLLYASKYNDIRTFVNVSGRYDLKGGIEDRLGKDYMEKIMQDGFIDVKN 218
++LG S GG L+ A+KY ++++ + + D + ++ +G DV
Sbjct: 97 SLLGWSDGGITALIAAAKYP---SYIHKMVIWGANAYVTDE------DSMIYEGIRDVSK 147
Query: 219 KT-----------GDVEYRVTEESLMDRLNTNMH----DACLQI--DMECSVLTIHGSSD 261
+ G + T E +D + H + C + ++C L +HG D
Sbjct: 148 WSERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKD 207
Query: 262 KIIPLQDAHEFDKIIPNHKLHVV-EGANHGYTNHQAELVSVVLDFVK 307
++P A K + +LH++ EG ++ + E + DF++
Sbjct: 208 PLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFLQ 254
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 249 MECSVLTIHGSSDKIIPLQDAHEFDKIIPNHKLHVV-EGANHGYTNHQAELVSVVLDFVK 307
++C L +HG D ++P A K + +LH++ EG ++ + E + DF++
Sbjct: 195 VQCPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFLQ 254
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 112 EGISAFRFDFAGNGESEGSFQ------YGNYWREADDLRAVVQYFCGANRAVGAILGHSK 165
EGI+ +D G G SE Q YG EA+ LR+ + N V + G S
Sbjct: 54 EGITVLFYDQFGCGRSEEPDQSKFTIDYGV--EEAEALRSKL----FGNEKV-FLXGSSY 106
Query: 166 GGSVVLLYASKYNDIRTFVNVSG 188
GG++ L YA KY D + VSG
Sbjct: 107 GGALALAYAVKYQDHLKGLIVSG 129
>pdb|4AO6|A Chain A, Native Structure Of A Novel Cold-Adapted Esterase From An
Arctic Intertidal Metagenomic Library
pdb|4AO7|A Chain A, Zinc Bound Structure Of A Novel Cold-Adapted Esterase From
An Arctic Intertidal Metagenomic Library
pdb|4AO8|A Chain A, Peg-Bound Complex Of A Novel Cold-Adapted Esterase From An
Arctic Intertidal Metagenomic Library
Length = 259
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 80 DAESSEIVVLCHGFRSTKDDPSMVNLAVALQNEGISAFRFDFAGNGESEGSFQYGNYWRE 139
+ S +V+L HG + K + +A L GISA D G+GE S Q G RE
Sbjct: 52 EGSSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGE-RASVQAG---RE 107
Query: 140 ADDL 143
D+
Sbjct: 108 PTDV 111
>pdb|1WQ1|G Chain G, Ras-Rasgap Complex
pdb|1WER|A Chain A, Ras-Gtpase-Activating Domain Of Human P120gap
Length = 334
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 261 DKIIPLQDAHEFDKIIPNHKLHVVEGANHGYTNHQAELVSVVL 303
+KI+P ++ EF ++I +LHVV +H + L S++L
Sbjct: 2 EKIMPEEEYSEFKELILQKELHVVYALSHVCGQDRTLLASILL 44
>pdb|3GQC|A Chain A, Structure Of Human Rev1-Dna-Dntp Ternary Complex
pdb|3GQC|B Chain B, Structure Of Human Rev1-Dna-Dntp Ternary Complex
pdb|3GQC|C Chain C, Structure Of Human Rev1-Dna-Dntp Ternary Complex
pdb|3GQC|D Chain D, Structure Of Human Rev1-Dna-Dntp Ternary Complex
Length = 504
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 217 KNKTGDVEYRVTEESLMDRLNTNMHDAC-LQIDMECSVLTI 256
K KTG VT+ M LN+ H +C + +DM+C +++
Sbjct: 62 KMKTGRSALVVTDTGDMSVLNSPRHQSCIMHVDMDCFFVSV 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,219,655
Number of Sequences: 62578
Number of extensions: 365616
Number of successful extensions: 1053
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1000
Number of HSP's gapped (non-prelim): 73
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)