BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020933
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|B Chain B, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|C Chain C, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|D Chain D, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|2Q41|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
Length = 334
Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/279 (74%), Positives = 236/279 (84%), Gaps = 11/279 (3%)
Query: 2 AETGSAAATDLPLKRPRDDGEKEANNNNNGSVLMEM---DSNKQPDCISSVIPGWFSEIS 58
++ +ATDL KRPR++ ++N G+ E D K+P C S+VIPGWFSE S
Sbjct: 1 SDAKETSATDL--KRPREE------DDNGGAATXETENGDQKKEPACFSTVIPGWFSEXS 52
Query: 59 PMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITH 118
P WPGEAHSLKVEK+LFQGKSDYQ+V+VFQS+TYGKVL+LDGVIQLTERDECAYQE ITH
Sbjct: 53 PXWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEXITH 112
Query: 119 LPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFE 178
LPLCSIPNPKKVLVI VLREV+RH+S+E+ID CEIDK VVDVSKQFFPDVA+G+E
Sbjct: 113 LPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYE 172
Query: 179 DPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238
DPRV L IGDGVAFLK EG+YDAVIVDSSDPIGPA+ELFEKPFF+SVA+ALRPGGVV
Sbjct: 173 DPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVC 232
Query: 239 TQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYP 277
TQAES+WLH IIEDIV+NCR+IFKGSVNYAWT+VPTYP
Sbjct: 233 TQAESLWLHXDIIEDIVSNCREIFKGSVNYAWTSVPTYP 271
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 174/253 (68%), Gaps = 4/253 (1%)
Query: 53 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAY 112
WFSE S MWPG+A SLK++KIL++ KS YQNV+VF+S+TYGKVL+LDGVIQLTE+DE AY
Sbjct: 43 WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 102
Query: 113 QEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172
EM+TH+P+ PK VLV+ ++RE+ ++ SVE IDICEID+ V++VSK +F +
Sbjct: 103 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 162
Query: 173 VAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALR 232
++ G+ED RV + I D FL+ V TYD +IVDSSDPIGPA+ LF + F+E + AL+
Sbjct: 163 ISCGYEDKRVNVFIEDASKFLENVT-NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK 221
Query: 233 PGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFLP--SCSAVNSD 290
P G Q ES+W+H+ I++++ +++FK V YA ++PTYP + CS ++
Sbjct: 222 PNGYCVAQCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSKTDTG 280
Query: 291 LSPSMPSLHGHPF 303
L+ L F
Sbjct: 281 LTKPNKKLESKEF 293
>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
Length = 282
Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 174/253 (68%), Gaps = 4/253 (1%)
Query: 53 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAY 112
WFSE S MWPG+A SLK++KIL++ KS YQNV+VF+S+TYGKVL+LDGVIQLTE+DE AY
Sbjct: 4 WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 63
Query: 113 QEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172
EM+TH+P+ PK VLV+ ++RE+ ++ SVE IDICEID+ V++VSK +F +
Sbjct: 64 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 123
Query: 173 VAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALR 232
++ G+ED RV + I D FL+ V TYD +IVDSSDPIGPA+ LF + F+E + AL+
Sbjct: 124 ISCGYEDKRVNVFIEDASKFLENVT-NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK 182
Query: 233 PGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFLP--SCSAVNSD 290
P G Q ES+W+H+ I++++ +++FK V YA ++PTYP + CS ++
Sbjct: 183 PNGYCVAQCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSKTDTG 241
Query: 291 LSPSMPSLHGHPF 303
L+ L F
Sbjct: 242 LTKPNKKLESKEF 254
>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2I7C|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|3B7P|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3RIE|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
Length = 283
Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/253 (48%), Positives = 174/253 (68%), Gaps = 4/253 (1%)
Query: 53 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAY 112
WFSE S MWPG+A SLK++KIL++ KS YQNV+VF+S+TYGKVL+LDGVIQLTE+DE AY
Sbjct: 5 WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 64
Query: 113 QEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172
EM+TH+P+ PK VLV+ ++RE+ ++ SVE IDICEID+ V++VSK +F +
Sbjct: 65 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 124
Query: 173 VAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALR 232
++ G+ED RV + I D FL+ V TYD +IVDSSDPIGPA+ LF + F+E + AL+
Sbjct: 125 ISCGYEDKRVNVFIEDASKFLENVT-NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK 183
Query: 233 PGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFLP--SCSAVNSD 290
P G Q ES+W+H+ I++++ +++FK V YA ++PTYP + CS ++
Sbjct: 184 PNGYCVAQCESLWIHVGTIKNMIGYAKKLFK-KVEYANISIPTYPCGCIGILCCSKTDTG 242
Query: 291 LSPSMPSLHGHPF 303
L+ L F
Sbjct: 243 LTKPNKKLESKEF 255
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 165/231 (71%), Gaps = 2/231 (0%)
Query: 47 SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTE 106
+++ GWF E +WPG+A SL+VE++L +S YQ+++VF+S TYG VL+LDGVIQ TE
Sbjct: 16 AAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTE 75
Query: 107 RDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVS 166
RDE +YQEMI +LPLCS PNP+KVL+I VLREV +H SVE + CEID+ V+ VS
Sbjct: 76 RDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVS 135
Query: 167 KQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFES 226
K+F P +A+G+ ++TLH+GDG F+K + +D +I DSSDP+GPA+ LF++ +++
Sbjct: 136 KKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPMGPAESLFKESYYQL 194
Query: 227 VAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYP 277
+ AL+ GV+ Q E WLH+ +I+++ C+ +F V YA+ T+PTYP
Sbjct: 195 MKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFP-VVAYAYCTIPTYP 244
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 165/231 (71%), Gaps = 2/231 (0%)
Query: 47 SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTE 106
+++ GWF E +WPG+A SL+VE++L +S YQ+++VF+S TYG VL+LDGVIQ TE
Sbjct: 16 AAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTE 75
Query: 107 RDECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVS 166
RDE +YQEMI +LPLCS PNP+KVL+I VLREV +H SVE + CEID+ V+ VS
Sbjct: 76 RDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVS 135
Query: 167 KQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFES 226
K+F P +A+G+ ++TLH+GDG F+K + +D +I DSSDP+GPA+ LF++ +++
Sbjct: 136 KKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-NQDAFDVIITDSSDPMGPAESLFKESYYQL 194
Query: 227 VAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYP 277
+ AL+ GV+ Q E WLH+ +I+++ C+ +F V YA+ T+PTYP
Sbjct: 195 MKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFP-VVAYAYCTIPTYP 244
>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
pdb|2B2C|B Chain B, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
Length = 314
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 163/222 (73%), Gaps = 2/222 (0%)
Query: 56 EISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEM 115
E+ WPG+A SL+V+K+LF KS YQ+V+VF+S+TYG VL+LDG++Q TERDE +YQEM
Sbjct: 38 EMGGAWPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEM 97
Query: 116 ITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV 175
+ HLP+ + P+PK+VL+I +LREV +H SVEK+ +CEID+MV+DV+K+F P ++
Sbjct: 98 LAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC 157
Query: 176 GFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGG 235
GF P++ L GDG FLK + +D +I DSSDP+GPA+ LF + ++E + AL+ G
Sbjct: 158 GFSHPKLDLFCGDGFEFLKN-HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDG 216
Query: 236 VVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYP 277
++S+Q ES+WLH+ +I +VA R+IF +V YA + V TYP
Sbjct: 217 ILSSQGESVWLHLPLIAHLVAFNRKIFP-AVTYAQSIVSTYP 257
>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWB|B Chain B, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWC|A Chain A, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
pdb|3BWC|B Chain B, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
Length = 304
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 146/229 (63%), Gaps = 3/229 (1%)
Query: 52 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQS---STYGKVLILDGVIQLTERD 108
GWF E + WPG+A SL+VEK+L+ + +Q++ +F+S +G V LDG IQ+T+ D
Sbjct: 18 GWFREENDQWPGQAXSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVXALDGCIQVTDYD 77
Query: 109 ECAYQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQ 168
E Y E++ H LCS P P++VL+I VLREV RH +VE D+ +ID V + SKQ
Sbjct: 78 EFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVXEQSKQ 137
Query: 169 FFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVA 228
FP ++ DPR T+ +GDG+AF++ P+ TYD VI+D++DP GPA +LF + F++ V
Sbjct: 138 HFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVL 197
Query: 229 KALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYP 277
+ L+P G+ Q ESIWL + +IE R+ SV YA VPTYP
Sbjct: 198 RILKPDGICCNQGESIWLDLELIEKXSRFIRETGFASVQYALXHVPTYP 246
>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
Length = 294
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 133/226 (58%), Gaps = 7/226 (3%)
Query: 68 LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNP 127
V+ +L+ K+D+Q++++F+++ +G+V+ LDGV+Q TERDE Y EM+TH+PL + +
Sbjct: 25 FAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHA 84
Query: 128 KKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVG-FEDPRVTLHI 186
K VL+I +LREV+RH +VE I + EID VV +Q+ P+ G ++DPR L I
Sbjct: 85 KHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVI 144
Query: 187 GDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWL 246
DGV F+ + T+D +I D +DPIGP + LF F+E + L PGG+ Q +L
Sbjct: 145 DDGVNFVNQTSQ-TFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFL 203
Query: 247 HMHIIEDIVANCRQI--FKGSVNYAWTTVPTYPRTFLPSCSAVNSD 290
E+ + + R++ + V + +PTY + A ++D
Sbjct: 204 QQ---EEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDND 246
>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase
pdb|1IY9|B Chain B, Crystal Structure Of Spermidine Synthase
pdb|1IY9|C Chain C, Crystal Structure Of Spermidine Synthase
pdb|1IY9|D Chain D, Crystal Structure Of Spermidine Synthase
Length = 275
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 135/226 (59%), Gaps = 8/226 (3%)
Query: 58 SPMWPGEAHS------LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECA 111
S +W E + +KV K L ++++Q++ + ++ +G +L LDG++ +E+DE
Sbjct: 1 SELWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFV 60
Query: 112 YQEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP 171
Y EM+ H+PL + PNP+ VLV+ V+RE+ +H SV+K + +ID V++ SK+F P
Sbjct: 61 YHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP 120
Query: 172 DVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKAL 231
+A +DPRV + + DG + A E YD ++VDS++P+GPA LF K F+ +AKAL
Sbjct: 121 SIAGKLDDPRVDVQVDDGFMHI-AKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKAL 179
Query: 232 RPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYP 277
+ G+ Q ++ W +I ++ + ++IF + Y +PTYP
Sbjct: 180 KEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYT-ANIPTYP 224
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 9/221 (4%)
Query: 53 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAY 112
+F ++P E ++E+++ GK+ +Q+ +F+S +GKVLILD +Q TERDE Y
Sbjct: 7 FFEHVTPY---ETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIY 63
Query: 113 QEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172
E + H + + P PK+VL++ LREV +H +VEK + +ID +V+V+K+ P+
Sbjct: 64 HETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPE 123
Query: 173 VAVG-FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIG---PAQELFEKPFFESVA 228
G F+DPR L I D A+L+ E YD VI+D +DP+G PA+ L+ F+ V
Sbjct: 124 WHQGAFDDPRAVLVIDDARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVK 182
Query: 229 KALRPGGVVSTQAESIWLHMHIIEDIV-ANCRQIFKGSVNY 268
L PGGV+ QA I L H + +V R+ F+ +Y
Sbjct: 183 AHLNPGGVMGMQAGMILLTHHRVHPVVHRTVREAFRYVRSY 223
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 141 bits (355), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 9/221 (4%)
Query: 53 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAY 112
+F ++P E ++E+++ GK+ +Q+ +F+S +GKVLILD +Q TERDE Y
Sbjct: 7 FFEHVTPY---ETLVRRMERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIY 63
Query: 113 QEMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172
E + H + + P PK+VL++ LREV +H +VEK + +ID +V+V+K+ P+
Sbjct: 64 HETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPE 123
Query: 173 VAVG-FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIG---PAQELFEKPFFESVA 228
G F+DPR L I D A+L+ E YD VI+D +DP+G PA+ L+ F+ V
Sbjct: 124 WHQGAFDDPRAVLVIDDARAYLERTEE-RYDVVIIDLTDPVGEDNPARLLYTVEFYRLVK 182
Query: 229 KALRPGGVVSTQAESIWLHMHIIEDIV-ANCRQIFKGSVNY 268
L PGGV+ Q I L H + +V R+ F+ +Y
Sbjct: 183 AHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSY 223
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 109/176 (61%), Gaps = 2/176 (1%)
Query: 68 LKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNP 127
+K+ ++++ G+SD Q + +F++ G V LDG+ TE+DE Y EM+ H+P+ PNP
Sbjct: 32 MKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFLHPNP 91
Query: 128 KKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG 187
KKVL+I LREV +H SVEK +CE+D +V++ ++++ + GF+DPR + I
Sbjct: 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIA 151
Query: 188 DGVAFLKAVPEGTYDAVIVDSSDPI-GPAQELFEKPFFESVAKALRPGGVVSTQAE 242
+G +++ + +D +I+DS+DP G LF + F+++ AL+ GV S + E
Sbjct: 152 NGAEYVRKF-KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 116/217 (53%), Gaps = 9/217 (4%)
Query: 63 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLC 122
G + K++K +++ S YQ + V+++ +G++L LDG +QL E +Y E + H +
Sbjct: 12 GYGVAFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAML 71
Query: 123 SIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP------DVAVG 176
+ P PK+VLVI +REV +H V+++ + EID+ V+ VSK + +
Sbjct: 72 AHPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLN 130
Query: 177 FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGV 236
+ + L IGDG F+K +D +I DS+DP+GPA+ LF + F+ V AL G+
Sbjct: 131 GKHEKAKLTIGDGFEFIKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGI 188
Query: 237 VSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTV 273
TQA S++L + +++F Y++ +
Sbjct: 189 YVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVI 225
>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2ZSU|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|E Chain E, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|F Chain F, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
Length = 280
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 123/217 (56%), Gaps = 8/217 (3%)
Query: 63 GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLC 122
G + KV++ + + +S+YQ + V+++ +GK+L +DG +QL E +Y E + H +
Sbjct: 13 GYGVAFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAML 72
Query: 123 SIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP------DVAVG 176
+ PNP++VL+I +REV +H VE++ + EIDK V+++S ++ + +
Sbjct: 73 AHPNPRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKYIGIDGGILEKMLS 132
Query: 177 FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGV 236
+ + L IGDGV F++ +D +IVDS+DP+GPA+ LF + F+++ +AL G+
Sbjct: 133 DKHEKGKLIIGDGVKFIEE--NSGFDVIIVDSTDPVGPAEMLFSEEFYKNAYRALNDPGI 190
Query: 237 VSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTV 273
TQA S++L R++F Y++ +
Sbjct: 191 YVTQAGSVYLFTDEFLTAYRKMRKVFDKVYYYSFPVI 227
>pdb|3C6K|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6M|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
Length = 381
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 18/205 (8%)
Query: 57 ISPMWP---GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQ 113
I WP G ++++++ S YQN+ + S +G +LIL G + L E D AY
Sbjct: 135 IDRYWPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYT 193
Query: 114 EMITHLPLCSIPNPKKVLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP-- 171
I K VL++ +L E+ + + + + EID+MV+D K++
Sbjct: 194 RAIMGSGKEDYTG-KDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKT 251
Query: 172 --DVAVGFEDPRVTLHIGDGVAFLKA-VPEGT-YDAVIVD------SSDPIGPAQELFEK 221
DV + + I D + LK EG +D VI D S+ P + F +
Sbjct: 252 CGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLR 311
Query: 222 PFFESVAKALRPGGVVSTQAESIWL 246
+ K L+ G TQ + L
Sbjct: 312 LILDLSMKVLKQDGKYFTQGNCVNL 336
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 283 SCSAVNSDLSPSMPSLHGHPFP 304
SC AV SDLSP + L G P P
Sbjct: 3 SCGAVTSDLSPCLTYLTGGPGP 24
>pdb|3M9W|A Chain A, Open Ligand-Free Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
pdb|3M9X|A Chain A, Open Liganded Crystal Structure Of Xylose Binding Protein
From Escherichia Coli
pdb|3MA0|A Chain A, Closed Liganded Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
pdb|3MA0|B Chain B, Closed Liganded Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
pdb|3MA0|C Chain C, Closed Liganded Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
Length = 313
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 130 VLVIXXXXXXVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG 189
VLVI VL V + + E I + D+M+ D F+ + F++ +V
Sbjct: 61 VLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFY----ISFDNEKVGEL--QA 114
Query: 190 VAFLKAVPEGTYDAVIVDSSDPIGPAQELFE-------KPFFES 226
A + VP+G Y + P+ +LF KP+ +S
Sbjct: 115 KALVDIVPQGNY---FLMGGSPVDNNAKLFRAGQMKVLKPYVDS 155
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 41 KQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILD 99
+P +SS PGW E W A ++ E G+SD++ + + V++LD
Sbjct: 35 SRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESDWRPGGICVTGXLPAVVLLD 93
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 71 EKILFQGKSD-YQNVMVFQSSTYGKVLILDGVIQLTER 107
E + FQG SD YQ V S YG+VL+ + ER
Sbjct: 12 ENLYFQGLSDRYQRVKKLGSGAYGEVLLCKDKLTGAER 49
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 176 GFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGG 235
GF+D RVT+ + D + + E D VI+D P + E AKAL+PGG
Sbjct: 142 GFDD-RVTIKLKD---IYEGIEEENVDHVILDLPQP---------ERVVEHAAKALKPGG 188
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 13/60 (21%)
Query: 176 GFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGG 235
GF+D RVT+ + D + + E D VI+D P + E AKAL+PGG
Sbjct: 142 GFDD-RVTIKLKD---IYEGIEEENVDHVILDLPQP---------ERVVEHAAKALKPGG 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,651,480
Number of Sequences: 62578
Number of extensions: 382594
Number of successful extensions: 1063
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1025
Number of HSP's gapped (non-prelim): 25
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)