Query 020933
Match_columns 319
No_of_seqs 399 out of 3106
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:18:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02366 spermidine synthase 100.0 4.8E-51 1E-55 380.6 28.4 251 38-288 3-255 (308)
2 KOG1562 Spermidine synthase [A 100.0 4.5E-52 9.8E-57 372.9 13.4 260 37-297 29-293 (337)
3 PF01564 Spermine_synth: Sperm 100.0 1.1E-47 2.4E-52 348.6 25.0 235 52-288 1-239 (246)
4 PRK00536 speE spermidine synth 100.0 4.1E-47 8.8E-52 345.1 22.3 217 52-290 1-219 (262)
5 COG0421 SpeE Spermidine syntha 100.0 1.2E-46 2.5E-51 345.8 24.4 234 50-287 2-237 (282)
6 PRK00811 spermidine synthase; 100.0 3.2E-45 7E-50 339.2 25.7 233 51-287 3-238 (283)
7 PLN02823 spermine synthase 100.0 2.1E-43 4.6E-48 332.4 27.8 235 50-288 29-269 (336)
8 TIGR00417 speE spermidine synt 100.0 1.4E-42 3E-47 319.8 25.5 231 53-287 1-233 (270)
9 PRK01581 speE spermidine synth 100.0 2.5E-40 5.4E-45 310.5 24.9 225 70-299 96-325 (374)
10 PRK03612 spermidine synthase; 100.0 2.8E-34 6E-39 286.4 22.8 220 65-289 233-462 (521)
11 COG4262 Predicted spermidine s 100.0 3.4E-33 7.3E-38 257.0 19.0 218 69-289 233-454 (508)
12 PRK04457 spermidine synthase; 99.9 2.8E-25 6.1E-30 203.7 22.4 201 74-287 9-217 (262)
13 COG2521 Predicted archaeal met 99.7 6.4E-16 1.4E-20 135.7 16.1 166 93-262 101-270 (287)
14 PF12847 Methyltransf_18: Meth 99.7 4E-16 8.6E-21 124.0 8.9 109 127-241 2-111 (112)
15 COG4123 Predicted O-methyltran 99.6 4.7E-14 1E-18 127.0 17.4 131 125-263 43-188 (248)
16 PF13659 Methyltransf_26: Meth 99.6 1.9E-14 4.1E-19 115.3 10.6 111 127-241 1-115 (117)
17 PF01209 Ubie_methyltran: ubiE 99.5 2.3E-14 4.9E-19 129.3 10.1 162 125-311 46-208 (233)
18 PF05175 MTS: Methyltransferas 99.5 1.5E-14 3.3E-19 124.3 8.3 108 126-240 31-139 (170)
19 TIGR00091 tRNA (guanine-N(7)-) 99.5 9.7E-14 2.1E-18 121.8 13.5 128 126-261 16-148 (194)
20 PRK00121 trmB tRNA (guanine-N( 99.5 1.7E-13 3.6E-18 121.2 14.9 127 126-260 40-171 (202)
21 COG2226 UbiE Methylase involve 99.5 6E-13 1.3E-17 119.7 15.2 106 126-241 51-156 (238)
22 TIGR00138 gidB 16S rRNA methyl 99.5 5.7E-13 1.2E-17 115.8 13.2 101 126-241 42-142 (181)
23 PRK14966 unknown domain/N5-glu 99.5 1.4E-12 3.1E-17 125.6 16.6 153 78-241 208-381 (423)
24 PRK15001 SAM-dependent 23S rib 99.5 2.5E-12 5.4E-17 123.4 17.6 135 115-263 220-355 (378)
25 TIGR02469 CbiT precorrin-6Y C5 99.5 4.8E-13 1E-17 107.6 10.4 104 126-241 19-122 (124)
26 PF13847 Methyltransf_31: Meth 99.5 2.8E-13 6E-18 114.0 9.1 107 126-241 3-110 (152)
27 COG2813 RsmC 16S RNA G1207 met 99.4 1.7E-12 3.6E-17 119.4 13.9 152 95-266 131-283 (300)
28 COG4122 Predicted O-methyltran 99.4 7.1E-13 1.5E-17 117.6 11.0 106 125-240 58-165 (219)
29 PRK00107 gidB 16S rRNA methylt 99.4 8E-13 1.7E-17 115.4 11.1 102 125-241 44-145 (187)
30 TIGR03533 L3_gln_methyl protei 99.4 1.1E-12 2.4E-17 121.8 12.7 155 79-242 76-252 (284)
31 PRK14121 tRNA (guanine-N(7)-)- 99.4 1.6E-12 3.6E-17 124.4 13.6 127 126-260 122-250 (390)
32 TIGR03704 PrmC_rel_meth putati 99.4 2.4E-12 5.2E-17 117.5 14.1 168 78-260 40-230 (251)
33 PF01596 Methyltransf_3: O-met 99.4 3.4E-13 7.4E-18 119.3 8.1 106 125-240 44-154 (205)
34 PRK15128 23S rRNA m(5)C1962 me 99.4 2.3E-12 4.9E-17 124.8 14.5 129 126-257 220-355 (396)
35 PF08241 Methyltransf_11: Meth 99.4 5.1E-13 1.1E-17 102.0 7.8 95 131-239 1-95 (95)
36 PRK08287 cobalt-precorrin-6Y C 99.4 2.1E-12 4.6E-17 112.5 12.7 102 125-241 30-131 (187)
37 PRK15451 tRNA cmo(5)U34 methyl 99.4 2.1E-12 4.6E-17 117.5 12.8 108 125-241 55-164 (247)
38 PLN02781 Probable caffeoyl-CoA 99.4 1.5E-12 3.2E-17 117.7 11.3 106 125-240 67-177 (234)
39 PRK01544 bifunctional N5-gluta 99.4 1.7E-12 3.6E-17 129.6 12.3 157 78-241 69-269 (506)
40 COG4106 Tam Trans-aconitate me 99.4 1.8E-12 4E-17 113.0 10.7 114 113-245 20-133 (257)
41 PRK11805 N5-glutamine S-adenos 99.4 2.7E-12 5.9E-17 120.4 12.5 155 79-242 88-264 (307)
42 PRK01683 trans-aconitate 2-met 99.4 2.9E-12 6.4E-17 117.0 12.5 102 125-242 30-131 (258)
43 PRK00377 cbiT cobalt-precorrin 99.4 6.1E-12 1.3E-16 110.7 13.9 122 124-260 38-160 (198)
44 TIGR00536 hemK_fam HemK family 99.4 3.2E-12 7E-17 118.7 12.4 155 79-242 69-245 (284)
45 PLN02476 O-methyltransferase 99.4 3.8E-12 8.2E-17 117.1 12.5 106 125-240 117-227 (278)
46 COG2242 CobL Precorrin-6B meth 99.4 9.2E-12 2E-16 107.0 13.9 120 124-261 32-151 (187)
47 PRK14103 trans-aconitate 2-met 99.4 1.9E-12 4.1E-17 118.3 10.3 99 125-241 28-126 (255)
48 PRK11036 putative S-adenosyl-L 99.4 3.8E-12 8.3E-17 116.3 12.0 107 125-241 43-149 (255)
49 COG1092 Predicted SAM-dependen 99.4 5.8E-12 1.3E-16 120.8 13.3 129 126-257 217-352 (393)
50 TIGR03534 RF_mod_PrmC protein- 99.4 1.6E-11 3.5E-16 111.1 15.4 109 126-241 87-217 (251)
51 COG2230 Cfa Cyclopropane fatty 99.4 3.9E-12 8.4E-17 116.6 11.1 107 123-241 69-176 (283)
52 PF13649 Methyltransf_25: Meth 99.4 1.4E-12 3.1E-17 102.1 7.2 97 130-235 1-101 (101)
53 COG2227 UbiG 2-polyprenyl-3-me 99.4 5.5E-12 1.2E-16 112.2 11.4 104 126-243 59-163 (243)
54 TIGR02752 MenG_heptapren 2-hep 99.4 1.3E-11 2.7E-16 110.8 14.0 107 125-241 44-151 (231)
55 PRK11207 tellurite resistance 99.4 5.3E-12 1.1E-16 111.1 11.2 103 126-239 30-132 (197)
56 PRK07402 precorrin-6B methylas 99.4 1.8E-11 3.9E-16 107.5 14.6 105 125-242 39-143 (196)
57 PF02353 CMAS: Mycolic acid cy 99.4 3E-12 6.5E-17 118.1 9.8 107 123-241 59-166 (273)
58 PRK09489 rsmC 16S ribosomal RN 99.4 5.2E-12 1.1E-16 120.1 11.7 108 127-243 197-305 (342)
59 PLN02233 ubiquinone biosynthes 99.4 5.4E-12 1.2E-16 115.8 11.2 110 125-241 72-182 (261)
60 PRK04266 fibrillarin; Provisio 99.4 5.4E-11 1.2E-15 106.9 17.3 126 124-262 70-203 (226)
61 PF02390 Methyltransf_4: Putat 99.3 7.6E-12 1.6E-16 110.0 11.3 124 129-260 20-148 (195)
62 PF08242 Methyltransf_12: Meth 99.3 3.4E-13 7.4E-18 105.0 2.0 99 131-237 1-99 (99)
63 TIGR00740 methyltransferase, p 99.3 2E-11 4.3E-16 110.4 13.8 108 125-241 52-161 (239)
64 TIGR00537 hemK_rel_arch HemK-r 99.3 1.8E-11 4E-16 105.8 12.7 105 126-241 19-140 (179)
65 TIGR00080 pimt protein-L-isoas 99.3 1.1E-11 2.3E-16 110.6 11.3 111 112-241 66-177 (215)
66 PLN02396 hexaprenyldihydroxybe 99.3 1.2E-11 2.5E-16 116.6 11.6 104 126-241 131-235 (322)
67 PRK14967 putative methyltransf 99.3 4.2E-11 9E-16 107.3 14.5 106 126-240 36-158 (223)
68 PLN02589 caffeoyl-CoA O-methyl 99.3 1.1E-11 2.3E-16 112.6 10.7 106 125-240 78-189 (247)
69 PRK09328 N5-glutamine S-adenos 99.3 3.2E-11 7E-16 110.9 14.1 152 80-241 65-238 (275)
70 PLN02244 tocopherol O-methyltr 99.3 9.1E-12 2E-16 118.6 10.8 107 125-241 117-223 (340)
71 PRK10909 rsmD 16S rRNA m(2)G96 99.3 8.9E-11 1.9E-15 103.4 16.1 144 84-242 13-160 (199)
72 COG2519 GCD14 tRNA(1-methylade 99.3 1.9E-11 4.2E-16 109.6 12.0 118 125-261 93-211 (256)
73 PRK13942 protein-L-isoaspartat 99.3 1.6E-11 3.4E-16 109.4 11.3 101 125-241 75-176 (212)
74 KOG1540 Ubiquinone biosynthesi 99.3 1.1E-11 2.3E-16 110.8 9.5 161 126-309 100-267 (296)
75 PRK13944 protein-L-isoaspartat 99.3 2.4E-11 5.2E-16 107.6 11.8 101 126-241 72-173 (205)
76 smart00828 PKS_MT Methyltransf 99.3 1.2E-11 2.6E-16 110.4 9.5 103 128-241 1-104 (224)
77 PRK11783 rlmL 23S rRNA m(2)G24 99.3 2.5E-11 5.4E-16 125.7 13.0 114 126-243 538-658 (702)
78 TIGR00477 tehB tellurite resis 99.3 2.6E-11 5.7E-16 106.5 11.2 102 126-239 30-131 (195)
79 COG0220 Predicted S-adenosylme 99.3 4.7E-11 1E-15 107.1 12.7 112 128-243 50-166 (227)
80 COG2890 HemK Methylase of poly 99.3 6.5E-11 1.4E-15 109.7 14.1 153 78-242 66-239 (280)
81 TIGR02072 BioC biotin biosynth 99.3 2.6E-11 5.6E-16 108.5 10.9 103 125-241 33-135 (240)
82 COG2518 Pcm Protein-L-isoaspar 99.3 2.5E-11 5.5E-16 106.5 10.2 101 124-242 70-170 (209)
83 PF05401 NodS: Nodulation prot 99.3 4.9E-11 1.1E-15 103.4 11.8 126 125-262 42-172 (201)
84 TIGR00406 prmA ribosomal prote 99.3 5.9E-11 1.3E-15 110.5 13.0 118 126-262 159-276 (288)
85 PTZ00098 phosphoethanolamine N 99.3 3.1E-11 6.8E-16 110.9 10.6 105 125-241 51-156 (263)
86 PRK11188 rrmJ 23S rRNA methylt 99.3 7.9E-11 1.7E-15 104.6 12.5 120 125-263 50-183 (209)
87 PLN03075 nicotianamine synthas 99.2 5.9E-11 1.3E-15 109.9 11.9 109 126-241 123-233 (296)
88 PF10672 Methyltrans_SAM: S-ad 99.2 7.2E-11 1.6E-15 109.2 12.4 134 126-262 123-259 (286)
89 PRK10258 biotin biosynthesis p 99.2 5.5E-11 1.2E-15 108.2 10.8 99 126-241 42-140 (251)
90 PRK14968 putative methyltransf 99.2 1.3E-10 2.9E-15 100.4 12.3 112 125-243 22-150 (188)
91 KOG1270 Methyltransferases [Co 99.2 2.4E-11 5.2E-16 109.0 7.6 103 127-243 90-197 (282)
92 PRK11873 arsM arsenite S-adeno 99.2 7.2E-11 1.6E-15 108.7 10.8 106 125-240 76-182 (272)
93 PF01135 PCMT: Protein-L-isoas 99.2 5.6E-11 1.2E-15 105.5 9.3 113 110-241 59-172 (209)
94 TIGR00438 rrmJ cell division p 99.2 2.7E-10 5.8E-15 99.3 13.4 119 125-262 31-163 (188)
95 PRK06922 hypothetical protein; 99.2 8.4E-11 1.8E-15 118.4 10.7 111 126-241 418-537 (677)
96 PRK12335 tellurite resistance 99.2 8.5E-11 1.9E-15 109.3 10.1 102 126-239 120-221 (287)
97 PRK00517 prmA ribosomal protei 99.2 2.2E-10 4.7E-15 104.5 11.9 112 125-261 118-229 (250)
98 PLN02336 phosphoethanolamine N 99.2 1.6E-10 3.4E-15 114.8 11.9 104 125-241 265-369 (475)
99 KOG2352 Predicted spermine/spe 99.2 4.4E-11 9.5E-16 115.7 7.6 148 110-263 272-436 (482)
100 PHA03411 putative methyltransf 99.2 2.5E-10 5.4E-15 104.5 11.9 112 126-249 64-192 (279)
101 TIGR00446 nop2p NOL1/NOP2/sun 99.2 4.8E-10 1E-14 103.1 13.8 130 125-262 70-218 (264)
102 PRK10901 16S rRNA methyltransf 99.2 2.3E-10 4.9E-15 112.3 12.3 116 125-245 243-376 (427)
103 PRK14903 16S rRNA methyltransf 99.2 5.1E-10 1.1E-14 109.8 14.5 116 124-244 235-369 (431)
104 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.6E-10 3.6E-15 109.4 10.6 102 126-240 113-214 (340)
105 PRK14902 16S rRNA methyltransf 99.2 4.3E-10 9.4E-15 110.8 13.5 115 125-244 249-382 (444)
106 PF08704 GCD14: tRNA methyltra 99.1 2.4E-10 5.2E-15 103.7 10.5 124 123-262 37-164 (247)
107 TIGR01177 conserved hypothetic 99.1 3.2E-10 7E-15 107.5 11.7 110 125-242 181-295 (329)
108 PRK08317 hypothetical protein; 99.1 4.1E-10 9E-15 100.5 11.6 106 125-241 18-124 (241)
109 PRK11705 cyclopropane fatty ac 99.1 2.5E-10 5.4E-15 110.3 10.9 101 125-241 166-267 (383)
110 PRK00312 pcm protein-L-isoaspa 99.1 2.7E-10 5.9E-15 101.1 10.2 99 125-241 77-175 (212)
111 PF06325 PrmA: Ribosomal prote 99.1 1E-10 2.3E-15 108.7 7.6 117 125-262 160-276 (295)
112 PRK11088 rrmA 23S rRNA methylt 99.1 2.9E-10 6.2E-15 105.0 10.4 96 126-243 85-183 (272)
113 TIGR00452 methyltransferase, p 99.1 6.1E-10 1.3E-14 104.7 12.6 115 110-241 108-225 (314)
114 KOG2904 Predicted methyltransf 99.1 1.3E-09 2.9E-14 98.3 13.7 173 78-256 100-300 (328)
115 PLN02672 methionine S-methyltr 99.1 1.8E-09 4E-14 114.8 17.2 151 90-242 83-279 (1082)
116 PTZ00146 fibrillarin; Provisio 99.1 4.3E-09 9.3E-14 97.3 17.4 154 119-287 125-287 (293)
117 cd02440 AdoMet_MTases S-adenos 99.1 9E-10 2E-14 83.8 10.9 103 129-240 1-103 (107)
118 TIGR00563 rsmB ribosomal RNA s 99.1 7.8E-10 1.7E-14 108.4 13.1 118 125-245 237-372 (426)
119 TIGR03587 Pse_Me-ase pseudamin 99.1 4.9E-10 1.1E-14 99.2 10.5 100 124-239 41-140 (204)
120 PRK15068 tRNA mo(5)U34 methylt 99.1 7.8E-10 1.7E-14 104.5 12.3 116 110-240 109-225 (322)
121 PRK14904 16S rRNA methyltransf 99.1 1E-09 2.2E-14 108.2 13.6 114 125-245 249-381 (445)
122 COG2264 PrmA Ribosomal protein 99.1 3.1E-10 6.7E-15 105.0 9.2 102 126-241 162-263 (300)
123 TIGR00095 RNA methyltransferas 99.1 1.2E-09 2.7E-14 95.5 12.5 107 126-241 49-159 (189)
124 PHA03412 putative methyltransf 99.1 5.7E-10 1.2E-14 100.0 10.4 101 126-239 49-160 (241)
125 TIGR02716 C20_methyl_CrtF C-20 99.1 4.9E-10 1.1E-14 105.0 10.6 106 125-240 148-253 (306)
126 PRK13943 protein-L-isoaspartat 99.1 1.3E-09 2.8E-14 102.8 13.4 101 125-241 79-180 (322)
127 PRK14901 16S rRNA methyltransf 99.1 1.4E-09 3E-14 107.0 13.9 116 125-244 251-387 (434)
128 smart00650 rADc Ribosomal RNA 99.1 1E-09 2.2E-14 94.1 11.4 100 126-242 13-114 (169)
129 KOG1271 Methyltransferases [Ge 99.1 4.9E-10 1.1E-14 95.5 9.1 111 126-243 67-183 (227)
130 PRK00216 ubiE ubiquinone/menaq 99.1 7E-10 1.5E-14 99.3 10.4 106 126-240 51-157 (239)
131 PF03602 Cons_hypoth95: Conser 99.1 4.2E-10 9E-15 98.0 8.4 109 126-242 42-154 (183)
132 PF03848 TehB: Tellurite resis 99.1 4.2E-10 9.2E-15 98.2 8.4 103 126-240 30-132 (192)
133 KOG4300 Predicted methyltransf 99.1 3E-10 6.4E-15 98.6 7.3 104 127-240 77-181 (252)
134 PLN02336 phosphoethanolamine N 99.1 4.7E-10 1E-14 111.4 9.8 105 126-240 37-141 (475)
135 TIGR03840 TMPT_Se_Te thiopurin 99.1 8.8E-10 1.9E-14 98.2 10.5 111 125-240 33-151 (213)
136 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 1E-09 2.2E-14 97.3 10.9 105 125-241 38-143 (223)
137 TIGR03438 probable methyltrans 99.0 1.6E-09 3.5E-14 101.5 11.5 112 125-241 62-177 (301)
138 KOG2899 Predicted methyltransf 99.0 2.4E-09 5.1E-14 95.1 11.3 116 126-246 58-213 (288)
139 TIGR02021 BchM-ChlM magnesium 99.0 2.3E-09 5.1E-14 95.5 11.2 103 126-240 55-157 (219)
140 PRK05134 bifunctional 3-demeth 99.0 2.4E-09 5.1E-14 96.3 11.0 104 126-241 48-151 (233)
141 PRK13168 rumA 23S rRNA m(5)U19 99.0 6.3E-09 1.4E-13 102.5 14.7 102 126-241 297-400 (443)
142 COG2263 Predicted RNA methylas 99.0 2.6E-09 5.6E-14 91.9 10.1 100 126-240 45-144 (198)
143 PRK01544 bifunctional N5-gluta 99.0 4.5E-09 9.7E-14 105.1 13.3 126 126-259 347-476 (506)
144 PRK05785 hypothetical protein; 99.0 4.5E-09 9.7E-14 94.5 12.0 91 126-235 51-141 (226)
145 PF13489 Methyltransf_23: Meth 99.0 1.6E-09 3.5E-14 90.8 8.5 98 124-243 20-117 (161)
146 TIGR01983 UbiG ubiquinone bios 99.0 2.9E-09 6.3E-14 94.9 10.5 105 126-241 45-149 (224)
147 PRK03522 rumB 23S rRNA methylu 99.0 7.5E-09 1.6E-13 97.6 13.2 103 126-242 173-275 (315)
148 TIGR02085 meth_trns_rumB 23S r 99.0 1.6E-08 3.4E-13 97.7 15.3 117 126-262 233-349 (374)
149 PRK13255 thiopurine S-methyltr 99.0 3.3E-09 7.1E-14 94.9 9.8 109 125-238 36-152 (218)
150 PRK06202 hypothetical protein; 99.0 3.6E-09 7.7E-14 95.2 10.2 103 125-240 59-165 (232)
151 TIGR00479 rumA 23S rRNA (uraci 99.0 2.3E-08 5E-13 98.2 16.7 103 125-240 291-395 (431)
152 KOG3010 Methyltransferase [Gen 98.9 2.7E-09 5.9E-14 94.8 7.9 108 124-243 31-139 (261)
153 smart00138 MeTrc Methyltransfe 98.9 2.5E-09 5.4E-14 98.4 7.9 111 126-240 99-241 (264)
154 PRK07580 Mg-protoporphyrin IX 98.9 1.5E-08 3.2E-13 90.6 12.1 102 125-238 62-163 (230)
155 PF07021 MetW: Methionine bios 98.9 8.7E-09 1.9E-13 89.3 9.4 99 124-241 11-109 (193)
156 COG0742 N6-adenine-specific me 98.9 2.5E-08 5.3E-13 86.3 12.0 111 126-243 43-156 (187)
157 PRK04338 N(2),N(2)-dimethylgua 98.9 1.4E-08 3.1E-13 98.0 11.6 100 128-241 59-158 (382)
158 PLN02585 magnesium protoporphy 98.9 2.8E-08 6.1E-13 93.5 13.0 105 126-240 144-249 (315)
159 PF05891 Methyltransf_PK: AdoM 98.8 7E-09 1.5E-13 91.5 7.3 133 99-240 25-160 (218)
160 PRK05031 tRNA (uracil-5-)-meth 98.8 1.3E-07 2.9E-12 90.8 16.7 99 128-241 208-320 (362)
161 KOG1663 O-methyltransferase [S 98.8 3.6E-08 7.7E-13 87.3 11.1 121 106-241 58-183 (237)
162 TIGR02143 trmA_only tRNA (urac 98.8 2.1E-07 4.5E-12 89.1 17.3 116 127-262 198-327 (353)
163 COG4976 Predicted methyltransf 98.8 1.7E-09 3.7E-14 95.4 1.4 101 127-243 126-227 (287)
164 PF02475 Met_10: Met-10+ like- 98.8 4.6E-08 9.9E-13 86.2 10.2 100 125-238 100-199 (200)
165 COG3963 Phospholipid N-methylt 98.8 7.2E-08 1.6E-12 81.3 10.7 108 125-243 47-158 (194)
166 TIGR00308 TRM1 tRNA(guanine-26 98.8 4.8E-08 1E-12 93.9 10.8 102 127-241 45-147 (374)
167 PF00891 Methyltransf_2: O-met 98.7 3.1E-08 6.7E-13 89.6 8.5 99 125-241 99-199 (241)
168 PRK13256 thiopurine S-methyltr 98.7 7.2E-08 1.6E-12 86.4 10.3 112 125-240 42-162 (226)
169 KOG1541 Predicted protein carb 98.7 8.1E-08 1.8E-12 84.4 9.9 125 126-264 50-182 (270)
170 PRK11933 yebU rRNA (cytosine-C 98.7 3E-07 6.6E-12 90.9 15.0 115 125-244 112-245 (470)
171 PF08003 Methyltransf_9: Prote 98.7 1.6E-07 3.5E-12 86.7 11.5 114 110-241 102-219 (315)
172 PTZ00338 dimethyladenosine tra 98.7 2.1E-07 4.6E-12 86.9 12.0 79 126-213 36-114 (294)
173 PF05724 TPMT: Thiopurine S-me 98.7 7.3E-08 1.6E-12 86.2 8.4 108 125-237 36-151 (218)
174 PF10294 Methyltransf_16: Puta 98.7 8.3E-08 1.8E-12 82.7 8.0 110 125-240 44-155 (173)
175 PRK14896 ksgA 16S ribosomal RN 98.7 3.7E-07 8.1E-12 83.7 12.7 74 126-211 29-102 (258)
176 KOG1661 Protein-L-isoaspartate 98.6 7.4E-08 1.6E-12 84.0 7.4 104 126-241 82-193 (237)
177 TIGR02081 metW methionine bios 98.6 1E-07 2.3E-12 83.4 8.5 92 126-233 13-104 (194)
178 COG1041 Predicted DNA modifica 98.6 2.1E-07 4.5E-12 87.5 10.5 119 113-242 186-311 (347)
179 PF05185 PRMT5: PRMT5 arginine 98.6 1.1E-07 2.3E-12 93.6 8.5 105 127-239 187-295 (448)
180 PRK11727 23S rRNA mA1618 methy 98.6 5.8E-07 1.3E-11 84.7 12.9 85 126-212 114-201 (321)
181 PF05219 DREV: DREV methyltran 98.6 7E-07 1.5E-11 80.8 11.6 93 126-240 94-187 (265)
182 PF09445 Methyltransf_15: RNA 98.6 1.6E-07 3.5E-12 79.9 6.8 76 129-209 2-78 (163)
183 PRK00274 ksgA 16S ribosomal RN 98.5 6E-07 1.3E-11 83.0 11.0 75 125-210 41-115 (272)
184 KOG3191 Predicted N6-DNA-methy 98.5 1.1E-06 2.3E-11 75.3 11.2 123 126-260 43-183 (209)
185 COG0030 KsgA Dimethyladenosine 98.5 1.2E-06 2.6E-11 79.9 11.7 97 127-240 31-130 (259)
186 TIGR00755 ksgA dimethyladenosi 98.5 9.2E-07 2E-11 80.8 11.1 74 125-210 28-104 (253)
187 KOG1709 Guanidinoacetate methy 98.5 1.1E-06 2.4E-11 77.0 10.6 106 125-240 100-205 (271)
188 PF03291 Pox_MCEL: mRNA cappin 98.5 2.9E-07 6.3E-12 87.2 7.6 115 126-241 62-186 (331)
189 PF01170 UPF0020: Putative RNA 98.5 4.4E-07 9.6E-12 78.7 8.1 111 125-240 27-150 (179)
190 COG2520 Predicted methyltransf 98.5 1.4E-05 3.1E-10 75.6 17.8 146 125-284 187-334 (341)
191 COG2265 TrmA SAM-dependent met 98.5 4.9E-06 1.1E-10 81.5 15.1 117 126-260 293-410 (432)
192 KOG1975 mRNA cap methyltransfe 98.3 1.5E-06 3.3E-11 80.4 8.0 118 125-243 116-239 (389)
193 PF01728 FtsJ: FtsJ-like methy 98.3 3E-06 6.5E-11 73.2 9.3 136 112-267 9-160 (181)
194 TIGR02987 met_A_Alw26 type II 98.3 2.4E-06 5.2E-11 86.0 9.9 127 126-256 31-211 (524)
195 COG0144 Sun tRNA and rRNA cyto 98.3 6.9E-06 1.5E-10 78.7 11.3 116 125-244 155-291 (355)
196 PF02384 N6_Mtase: N-6 DNA Met 98.3 2.3E-06 5.1E-11 80.3 7.8 116 125-242 45-184 (311)
197 PF13578 Methyltransf_24: Meth 98.3 5.9E-07 1.3E-11 70.7 3.0 98 131-240 1-104 (106)
198 PLN02232 ubiquinone biosynthes 98.3 2.2E-06 4.8E-11 72.9 6.7 81 154-241 1-81 (160)
199 PRK00050 16S rRNA m(4)C1402 me 98.2 6E-06 1.3E-10 77.0 9.9 77 126-208 19-98 (296)
200 KOG1499 Protein arginine N-met 98.2 2.6E-06 5.6E-11 79.9 6.9 101 126-238 60-164 (346)
201 COG4076 Predicted RNA methylas 98.2 3.2E-06 7E-11 72.7 6.6 113 110-240 22-134 (252)
202 PF05958 tRNA_U5-meth_tr: tRNA 98.2 2.3E-05 4.9E-10 75.2 13.2 116 127-262 197-326 (352)
203 KOG2361 Predicted methyltransf 98.2 3E-06 6.4E-11 75.7 6.3 108 126-241 71-183 (264)
204 PF02527 GidB: rRNA small subu 98.2 1.9E-05 4.1E-10 68.8 11.2 99 129-242 51-149 (184)
205 KOG2940 Predicted methyltransf 98.2 2.4E-06 5.2E-11 75.7 5.4 100 126-240 72-173 (325)
206 TIGR00478 tly hemolysin TlyA f 98.2 1.6E-05 3.4E-10 71.6 10.5 56 107-165 58-113 (228)
207 KOG0820 Ribosomal RNA adenine 98.2 7.2E-06 1.6E-10 74.4 7.9 81 124-213 56-136 (315)
208 PRK11783 rlmL 23S rRNA m(2)G24 98.1 1.4E-05 3.1E-10 83.1 10.7 113 126-241 190-347 (702)
209 COG0293 FtsJ 23S rRNA methylas 98.1 4.6E-05 1E-09 67.0 11.8 123 125-267 44-180 (205)
210 KOG3420 Predicted RNA methylas 98.1 6.9E-06 1.5E-10 67.9 6.0 97 126-232 48-144 (185)
211 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.1 1.5E-05 3.3E-10 74.1 8.9 116 125-244 84-222 (283)
212 PF12147 Methyltransf_20: Puta 98.1 5.6E-05 1.2E-09 69.5 11.7 117 125-247 134-254 (311)
213 KOG2915 tRNA(1-methyladenosine 98.0 3.7E-05 7.9E-10 69.9 10.2 102 124-239 103-208 (314)
214 PRK01747 mnmC bifunctional tRN 98.0 5.8E-05 1.2E-09 78.2 11.9 113 127-241 58-206 (662)
215 PF01269 Fibrillarin: Fibrilla 98.0 0.00034 7.3E-09 62.2 14.8 124 124-263 71-206 (229)
216 PF03059 NAS: Nicotianamine sy 98.0 4.2E-05 9E-10 70.5 9.3 109 126-241 120-230 (276)
217 KOG1500 Protein arginine N-met 98.0 4.2E-05 9E-10 71.4 9.2 106 126-241 177-282 (517)
218 COG0357 GidB Predicted S-adeno 97.9 0.00018 3.8E-09 64.1 12.4 99 127-239 68-166 (215)
219 PRK10742 putative methyltransf 97.9 8.6E-05 1.9E-09 67.2 10.4 83 129-214 91-178 (250)
220 PF06080 DUF938: Protein of un 97.9 1.9E-05 4.2E-10 69.4 5.4 109 129-241 28-141 (204)
221 KOG2730 Methylase [General fun 97.9 4.1E-05 9E-10 67.5 7.0 83 126-215 94-178 (263)
222 PRK04148 hypothetical protein; 97.9 6.5E-05 1.4E-09 61.8 7.8 67 126-206 16-83 (134)
223 PF05430 Methyltransf_30: S-ad 97.8 7.2E-05 1.6E-09 60.9 7.7 61 179-241 30-90 (124)
224 KOG3178 Hydroxyindole-O-methyl 97.8 2.8E-05 6.1E-10 73.1 5.9 92 127-240 178-274 (342)
225 PF01861 DUF43: Protein of unk 97.8 0.00017 3.8E-09 64.8 10.3 99 126-235 44-142 (243)
226 PF01739 CheR: CheR methyltran 97.8 9.1E-05 2E-09 65.2 8.4 111 126-240 31-174 (196)
227 PF00398 RrnaAD: Ribosomal RNA 97.8 6E-05 1.3E-09 69.2 7.5 100 126-240 30-133 (262)
228 PF03141 Methyltransf_29: Puta 97.8 9.6E-05 2.1E-09 72.5 8.8 181 39-245 31-223 (506)
229 PF02005 TRM: N2,N2-dimethylgu 97.7 8.1E-05 1.8E-09 71.9 7.6 104 127-241 50-154 (377)
230 PF08123 DOT1: Histone methyla 97.7 0.00013 2.7E-09 64.7 7.5 109 125-239 41-156 (205)
231 PRK10611 chemotaxis methyltran 97.7 0.00011 2.3E-09 68.4 6.8 111 126-240 115-261 (287)
232 KOG1562 Spermidine synthase [A 97.6 4.9E-05 1.1E-09 69.8 4.1 186 42-241 95-293 (337)
233 PF04816 DUF633: Family of unk 97.6 0.00029 6.3E-09 62.4 8.8 112 130-255 1-112 (205)
234 PF04989 CmcI: Cephalosporin h 97.6 0.00038 8.1E-09 61.4 8.9 116 108-240 20-146 (206)
235 COG1867 TRM1 N2,N2-dimethylgua 97.6 0.00043 9.4E-09 65.6 9.8 102 127-241 53-154 (380)
236 COG0116 Predicted N6-adenine-s 97.6 0.0003 6.4E-09 67.4 8.7 108 128-241 193-344 (381)
237 PF05148 Methyltransf_8: Hypot 97.5 0.00031 6.6E-09 61.9 7.7 104 125-260 71-175 (219)
238 PRK11760 putative 23S rRNA C24 97.4 0.0006 1.3E-08 64.5 8.5 115 125-262 210-327 (357)
239 COG1352 CheR Methylase of chem 97.4 0.00063 1.4E-08 62.6 8.4 110 126-240 96-240 (268)
240 KOG3115 Methyltransferase-like 97.4 0.00049 1.1E-08 60.2 6.7 114 127-241 61-183 (249)
241 TIGR03439 methyl_EasF probable 97.4 0.0028 6.2E-08 59.8 12.1 112 125-241 75-197 (319)
242 PF07942 N2227: N2227-like pro 97.3 0.001 2.2E-08 61.3 8.2 111 126-243 56-203 (270)
243 TIGR01444 fkbM_fam methyltrans 97.3 0.00057 1.2E-08 56.2 6.1 56 129-188 1-56 (143)
244 KOG4589 Cell division protein 97.3 0.0076 1.7E-07 52.2 12.7 122 126-267 69-205 (232)
245 TIGR00006 S-adenosyl-methyltra 97.3 0.0019 4.2E-08 60.5 9.9 78 126-208 20-100 (305)
246 KOG2198 tRNA cytosine-5-methyl 97.2 0.0021 4.6E-08 61.0 9.9 136 123-262 152-319 (375)
247 COG0500 SmtA SAM-dependent met 97.2 0.004 8.7E-08 49.2 10.3 102 130-242 52-156 (257)
248 COG2384 Predicted SAM-dependen 97.2 0.0028 6E-08 56.2 9.7 119 125-257 15-133 (226)
249 KOG0822 Protein kinase inhibit 97.2 0.0011 2.4E-08 65.4 7.7 107 127-242 368-479 (649)
250 KOG2187 tRNA uracil-5-methyltr 97.2 0.0018 4E-08 63.7 9.2 122 125-262 382-507 (534)
251 KOG3201 Uncharacterized conser 97.1 0.00061 1.3E-08 57.6 4.6 126 127-261 30-157 (201)
252 COG1889 NOP1 Fibrillarin-like 97.1 0.02 4.4E-07 50.2 13.8 122 124-261 74-205 (231)
253 KOG1122 tRNA and rRNA cytosine 97.1 0.0032 6.9E-08 60.7 9.7 131 126-262 241-390 (460)
254 PF09243 Rsm22: Mitochondrial 97.1 0.0051 1.1E-07 57.0 10.9 104 126-240 33-138 (274)
255 cd00315 Cyt_C5_DNA_methylase C 97.1 0.018 3.8E-07 53.3 14.5 148 129-289 2-166 (275)
256 PRK11524 putative methyltransf 97.1 0.0034 7.4E-08 58.3 9.6 64 178-241 5-80 (284)
257 KOG3987 Uncharacterized conser 97.1 0.0002 4.4E-09 62.7 1.1 93 125-239 111-205 (288)
258 COG1063 Tdh Threonine dehydrog 97.0 0.006 1.3E-07 58.4 10.4 98 127-241 169-269 (350)
259 PF04672 Methyltransf_19: S-ad 96.9 0.0057 1.2E-07 56.1 9.3 110 126-241 68-190 (267)
260 COG3897 Predicted methyltransf 96.9 0.0015 3.2E-08 56.9 5.0 97 126-239 79-176 (218)
261 PF01795 Methyltransf_5: MraW 96.9 0.0033 7.2E-08 58.9 7.8 88 113-208 10-101 (310)
262 KOG1099 SAM-dependent methyltr 96.8 0.0089 1.9E-07 53.3 9.5 119 126-263 41-181 (294)
263 PF13679 Methyltransf_32: Meth 96.8 0.0028 6.1E-08 52.6 6.1 76 125-205 24-104 (141)
264 PF06962 rRNA_methylase: Putat 96.8 0.0067 1.5E-07 50.3 7.7 87 152-241 1-92 (140)
265 KOG3045 Predicted RNA methylas 96.7 0.0057 1.2E-07 55.6 7.6 85 125-240 179-263 (325)
266 COG0275 Predicted S-adenosylme 96.7 0.012 2.6E-07 54.6 9.2 88 113-208 13-104 (314)
267 PF05971 Methyltransf_10: Prot 96.6 0.011 2.3E-07 55.3 8.9 81 127-211 103-188 (299)
268 PF07091 FmrO: Ribosomal RNA m 96.6 0.0062 1.3E-07 55.2 6.9 74 125-206 104-177 (251)
269 PRK13699 putative methylase; P 96.6 0.0041 8.8E-08 56.0 5.8 59 182-240 2-71 (227)
270 COG1189 Predicted rRNA methyla 96.6 0.013 2.8E-07 52.6 8.7 108 113-239 68-176 (245)
271 PF04445 SAM_MT: Putative SAM- 96.5 0.0026 5.7E-08 57.2 4.1 82 128-212 77-163 (234)
272 COG1064 AdhP Zn-dependent alco 96.4 0.025 5.4E-07 53.7 10.2 94 125-241 165-259 (339)
273 KOG0024 Sorbitol dehydrogenase 96.4 0.018 4E-07 53.9 8.8 102 126-240 169-272 (354)
274 KOG2352 Predicted spermine/spe 96.4 0.017 3.7E-07 56.8 9.0 105 129-241 51-161 (482)
275 KOG1253 tRNA methyltransferase 96.4 0.0049 1.1E-07 60.5 5.2 106 125-241 108-216 (525)
276 KOG1596 Fibrillarin and relate 96.3 0.062 1.3E-06 48.4 11.2 121 124-260 154-285 (317)
277 PRK09880 L-idonate 5-dehydroge 96.3 0.026 5.6E-07 53.4 9.6 97 126-241 169-266 (343)
278 KOG1269 SAM-dependent methyltr 96.2 0.0056 1.2E-07 58.8 4.7 104 126-240 110-214 (364)
279 COG1568 Predicted methyltransf 96.2 0.02 4.4E-07 52.5 7.6 105 126-240 152-259 (354)
280 PRK09424 pntA NAD(P) transhydr 96.1 0.042 9.2E-07 55.2 10.4 110 126-241 164-285 (509)
281 PF11599 AviRa: RRNA methyltra 96.1 0.041 8.8E-07 48.8 8.9 125 111-239 39-212 (246)
282 KOG2671 Putative RNA methylase 95.9 0.0081 1.8E-07 56.6 4.1 112 125-241 207-354 (421)
283 PF10354 DUF2431: Domain of un 95.8 0.018 3.9E-07 49.3 5.6 110 131-241 1-125 (166)
284 COG0286 HsdM Type I restrictio 95.8 0.049 1.1E-06 54.6 9.3 122 114-240 176-325 (489)
285 PTZ00357 methyltransferase; Pr 95.8 0.042 9E-07 56.3 8.6 106 129-236 703-830 (1072)
286 PRK10309 galactitol-1-phosphat 95.5 0.11 2.4E-06 49.1 10.3 101 125-241 159-260 (347)
287 PF11968 DUF3321: Putative met 95.5 0.025 5.4E-07 50.2 5.2 109 127-258 52-172 (219)
288 PF04378 RsmJ: Ribosomal RNA s 95.4 0.3 6.6E-06 44.4 12.0 118 131-262 62-183 (245)
289 PF06460 NSP13: Coronavirus NS 95.3 0.24 5.1E-06 45.2 10.9 151 110-286 43-208 (299)
290 cd08283 FDH_like_1 Glutathione 95.3 0.14 2.9E-06 49.5 10.3 110 125-241 183-306 (386)
291 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.3 0.0082 1.8E-07 54.9 1.7 113 126-241 56-199 (256)
292 COG5459 Predicted rRNA methyla 95.3 0.041 9E-07 52.1 6.2 110 126-241 113-225 (484)
293 TIGR03451 mycoS_dep_FDH mycoth 95.3 0.13 2.9E-06 48.9 10.0 100 125-241 175-276 (358)
294 TIGR01202 bchC 2-desacetyl-2-h 95.2 0.1 2.2E-06 48.8 8.8 87 126-241 144-231 (308)
295 cd08281 liver_ADH_like1 Zinc-d 95.1 0.14 3E-06 49.1 9.7 100 125-241 190-290 (371)
296 PF07279 DUF1442: Protein of u 95.1 0.35 7.6E-06 43.0 11.1 110 113-239 30-146 (218)
297 PF00107 ADH_zinc_N: Zinc-bind 95.1 0.056 1.2E-06 43.3 5.7 88 136-241 1-89 (130)
298 PF14314 Methyltrans_Mon: Viru 95.0 0.11 2.4E-06 53.4 8.9 161 126-288 322-502 (675)
299 PF03269 DUF268: Caenorhabditi 94.9 0.065 1.4E-06 45.5 5.7 102 127-241 2-111 (177)
300 cd08230 glucose_DH Glucose deh 94.9 0.17 3.6E-06 48.1 9.4 94 126-241 172-269 (355)
301 TIGR00518 alaDH alanine dehydr 94.8 0.28 6.1E-06 47.4 10.9 99 126-239 166-265 (370)
302 TIGR03366 HpnZ_proposed putati 94.8 0.29 6.2E-06 44.9 10.3 97 126-241 120-218 (280)
303 PF00145 DNA_methylase: C-5 cy 94.7 0.8 1.7E-05 42.5 13.3 147 129-290 2-166 (335)
304 cd08293 PTGR2 Prostaglandin re 94.6 0.26 5.6E-06 46.3 9.8 96 128-240 156-253 (345)
305 PRK05562 precorrin-2 dehydroge 94.6 0.23 5.1E-06 44.5 8.8 106 109-241 7-116 (223)
306 PF05711 TylF: Macrocin-O-meth 94.5 0.15 3.2E-06 46.5 7.5 108 126-241 74-212 (248)
307 PHA01634 hypothetical protein 94.5 0.069 1.5E-06 43.6 4.6 75 126-210 28-102 (156)
308 cd08239 THR_DH_like L-threonin 94.5 0.32 6.9E-06 45.7 10.0 99 125-241 162-262 (339)
309 COG0686 Ald Alanine dehydrogen 94.4 0.35 7.5E-06 45.4 9.7 99 126-239 167-266 (371)
310 COG2961 ComJ Protein involved 94.4 0.55 1.2E-05 42.6 10.7 118 131-262 93-214 (279)
311 COG1179 Dinucleotide-utilizing 94.3 0.71 1.5E-05 41.8 11.2 85 127-212 30-132 (263)
312 KOG1501 Arginine N-methyltrans 94.2 0.053 1.2E-06 52.7 4.1 57 128-188 68-124 (636)
313 TIGR00675 dcm DNA-methyltransf 94.2 1.5 3.3E-05 41.3 13.9 143 130-286 1-160 (315)
314 PLN02740 Alcohol dehydrogenase 93.8 0.53 1.1E-05 45.3 10.4 100 125-241 197-300 (381)
315 TIGR00561 pntA NAD(P) transhyd 93.8 0.51 1.1E-05 47.5 10.4 106 126-238 163-281 (511)
316 PRK10458 DNA cytosine methylas 93.7 2.5 5.4E-05 42.2 15.0 154 127-289 88-290 (467)
317 cd05188 MDR Medium chain reduc 93.7 0.63 1.4E-05 41.4 10.0 99 125-241 133-232 (271)
318 KOG1331 Predicted methyltransf 93.7 0.043 9.3E-07 50.6 2.3 100 125-241 44-143 (293)
319 COG0270 Dcm Site-specific DNA 93.6 0.97 2.1E-05 42.9 11.6 148 128-287 4-168 (328)
320 COG4121 Uncharacterized conser 93.6 0.088 1.9E-06 48.0 4.1 111 127-239 59-206 (252)
321 KOG4058 Uncharacterized conser 93.5 0.067 1.5E-06 44.7 3.0 62 127-192 73-134 (199)
322 cd08285 NADP_ADH NADP(H)-depen 93.5 0.7 1.5E-05 43.6 10.5 100 124-240 164-265 (351)
323 KOG0821 Predicted ribosomal RN 93.5 0.062 1.3E-06 47.9 2.9 60 127-192 51-110 (326)
324 PLN02827 Alcohol dehydrogenase 93.5 0.54 1.2E-05 45.3 9.8 100 125-241 192-295 (378)
325 KOG2793 Putative N2,N2-dimethy 93.4 0.54 1.2E-05 42.8 9.0 106 126-239 86-197 (248)
326 PF01555 N6_N4_Mtase: DNA meth 93.4 0.12 2.6E-06 45.3 4.7 52 115-168 180-231 (231)
327 PF02254 TrkA_N: TrkA-N domain 93.2 0.75 1.6E-05 36.1 8.6 94 130-243 1-98 (116)
328 COG0604 Qor NADPH:quinone redu 93.1 0.63 1.4E-05 44.1 9.3 98 125-241 141-241 (326)
329 cd08237 ribitol-5-phosphate_DH 93.1 0.68 1.5E-05 43.8 9.6 93 125-241 162-256 (341)
330 cd08254 hydroxyacyl_CoA_DH 6-h 92.9 0.77 1.7E-05 42.6 9.7 99 125-241 164-263 (338)
331 cd08294 leukotriene_B4_DH_like 92.8 0.85 1.8E-05 42.3 9.8 97 125-240 142-240 (329)
332 PLN03154 putative allyl alcoho 92.7 0.89 1.9E-05 43.2 9.8 99 125-241 157-258 (348)
333 PRK11524 putative methyltransf 92.6 0.2 4.3E-06 46.5 5.2 57 114-172 196-252 (284)
334 PF12692 Methyltransf_17: S-ad 92.6 0.13 2.8E-06 43.0 3.4 102 126-239 28-132 (160)
335 TIGR03201 dearomat_had 6-hydro 92.5 0.9 1.9E-05 43.0 9.6 99 125-241 165-272 (349)
336 PF02737 3HCDH_N: 3-hydroxyacy 92.4 0.5 1.1E-05 40.8 7.1 101 129-243 1-116 (180)
337 TIGR02825 B4_12hDH leukotriene 92.4 1.3 2.9E-05 41.2 10.5 98 125-241 137-237 (325)
338 PRK09260 3-hydroxybutyryl-CoA 92.4 0.31 6.8E-06 45.1 6.1 103 128-243 2-119 (288)
339 KOG2798 Putative trehalase [Ca 92.3 0.2 4.3E-06 46.9 4.5 106 127-239 151-294 (369)
340 COG4798 Predicted methyltransf 92.3 0.46 1E-05 41.7 6.5 115 123-241 45-166 (238)
341 PF03721 UDPG_MGDP_dh_N: UDP-g 92.1 1.8 3.9E-05 37.5 10.2 107 129-243 2-122 (185)
342 cd05278 FDH_like Formaldehyde 92.0 1.4 3E-05 41.3 10.1 99 125-240 166-266 (347)
343 cd05285 sorbitol_DH Sorbitol d 92.0 1.5 3.3E-05 41.1 10.5 100 124-240 160-264 (343)
344 cd08238 sorbose_phosphate_red 91.9 1.8 3.9E-05 42.1 11.1 104 126-240 175-287 (410)
345 PF03141 Methyltransf_29: Puta 91.9 0.85 1.8E-05 45.4 8.7 102 126-240 365-466 (506)
346 PF01262 AlaDh_PNT_C: Alanine 91.8 0.21 4.6E-06 42.5 3.9 105 126-238 19-136 (168)
347 cd05279 Zn_ADH1 Liver alcohol 91.7 1.6 3.4E-05 41.6 10.4 99 125-240 182-284 (365)
348 PRK05808 3-hydroxybutyryl-CoA 91.7 0.41 8.8E-06 44.2 6.0 102 128-243 4-120 (282)
349 PF10237 N6-adenineMlase: Prob 91.6 2.3 4.9E-05 36.3 10.0 96 126-241 25-123 (162)
350 PF01210 NAD_Gly3P_dh_N: NAD-d 91.6 1.1 2.3E-05 37.7 8.1 100 129-243 1-105 (157)
351 cd08295 double_bond_reductase_ 91.6 1.8 3.9E-05 40.6 10.4 98 125-240 150-250 (338)
352 PRK08293 3-hydroxybutyryl-CoA 91.5 1.1 2.4E-05 41.5 8.7 102 128-242 4-121 (287)
353 cd08300 alcohol_DH_class_III c 91.5 1.9 4.1E-05 41.1 10.6 100 125-241 185-288 (368)
354 COG1062 AdhC Zn-dependent alco 91.3 1.8 3.9E-05 41.2 9.8 100 126-241 185-285 (366)
355 PF02636 Methyltransf_28: Puta 91.2 0.18 3.9E-06 45.9 3.1 46 127-172 19-72 (252)
356 cd08233 butanediol_DH_like (2R 91.2 1.8 3.9E-05 40.8 10.0 100 125-241 171-272 (351)
357 TIGR02818 adh_III_F_hyde S-(hy 91.2 1.7 3.6E-05 41.6 9.9 100 125-241 184-287 (368)
358 PF01408 GFO_IDH_MocA: Oxidore 91.1 4 8.6E-05 31.9 10.5 108 129-261 2-112 (120)
359 PRK11064 wecC UDP-N-acetyl-D-m 91.0 2.9 6.2E-05 41.1 11.4 104 128-244 4-122 (415)
360 PLN02353 probable UDP-glucose 90.9 3.2 7E-05 41.5 11.8 112 129-246 3-132 (473)
361 KOG1098 Putative SAM-dependent 90.8 0.52 1.1E-05 47.9 6.0 119 125-262 43-175 (780)
362 PRK07530 3-hydroxybutyryl-CoA 90.8 0.69 1.5E-05 42.9 6.7 102 128-243 5-121 (292)
363 cd08277 liver_alcohol_DH_like 90.8 2.3 4.9E-05 40.5 10.4 100 125-241 183-286 (365)
364 cd08286 FDH_like_ADH2 formalde 90.7 2.6 5.6E-05 39.5 10.7 99 125-240 165-265 (345)
365 cd08232 idonate-5-DH L-idonate 90.7 1.6 3.6E-05 40.7 9.2 96 126-240 165-261 (339)
366 TIGR01470 cysG_Nterm siroheme 90.4 2.1 4.5E-05 37.9 9.0 68 126-210 8-79 (205)
367 cd08278 benzyl_alcohol_DH Benz 90.3 2.5 5.4E-05 40.3 10.2 100 125-241 185-285 (365)
368 PRK03562 glutathione-regulated 90.2 1.9 4.1E-05 44.6 9.8 71 127-210 400-474 (621)
369 PRK07502 cyclohexadienyl dehyd 90.1 2.4 5.1E-05 39.6 9.7 90 128-239 7-98 (307)
370 KOG2078 tRNA modification enzy 90.0 1.3 2.8E-05 43.3 7.7 67 125-195 248-314 (495)
371 cd08301 alcohol_DH_plants Plan 89.9 2.7 5.9E-05 40.0 10.1 100 125-241 186-289 (369)
372 PRK10637 cysG siroheme synthas 89.8 1.8 3.9E-05 43.0 9.0 77 117-210 2-82 (457)
373 PRK13699 putative methylase; P 89.5 0.64 1.4E-05 41.8 5.1 47 125-173 162-208 (227)
374 PRK06130 3-hydroxybutyryl-CoA 89.4 1.6 3.5E-05 40.7 8.0 102 128-242 5-116 (311)
375 PRK07066 3-hydroxybutyryl-CoA 89.4 1.6 3.4E-05 41.4 7.8 103 127-242 7-120 (321)
376 TIGR02819 fdhA_non_GSH formald 89.4 4.3 9.3E-05 39.4 11.1 107 125-241 184-299 (393)
377 TIGR00497 hsdM type I restrict 89.3 2.1 4.5E-05 43.1 9.1 111 128-240 219-354 (501)
378 PLN02586 probable cinnamyl alc 89.2 3.7 8.1E-05 39.1 10.5 93 126-241 183-278 (360)
379 COG1748 LYS9 Saccharopine dehy 89.0 2.1 4.5E-05 41.6 8.5 72 128-209 2-77 (389)
380 PRK06035 3-hydroxyacyl-CoA deh 88.9 2.6 5.6E-05 39.0 8.9 100 128-241 4-121 (291)
381 TIGR02356 adenyl_thiF thiazole 88.8 1.2 2.7E-05 39.1 6.3 33 126-159 20-54 (202)
382 cd08234 threonine_DH_like L-th 88.8 3.2 7E-05 38.5 9.5 96 125-240 158-256 (334)
383 PF11899 DUF3419: Protein of u 88.8 0.85 1.8E-05 44.3 5.6 59 180-241 275-334 (380)
384 PRK07819 3-hydroxybutyryl-CoA 88.8 1.4 3E-05 41.0 6.9 102 128-243 6-123 (286)
385 PRK10083 putative oxidoreducta 88.5 4.3 9.4E-05 37.8 10.2 99 125-241 159-259 (339)
386 cd08236 sugar_DH NAD(P)-depend 88.2 4.8 0.0001 37.6 10.4 99 125-240 158-257 (343)
387 KOG1209 1-Acyl dihydroxyaceton 88.1 4.8 0.0001 36.1 9.3 81 125-211 5-92 (289)
388 PLN02545 3-hydroxybutyryl-CoA 88.0 1.7 3.6E-05 40.4 7.0 102 128-243 5-121 (295)
389 cd00401 AdoHcyase S-adenosyl-L 88.0 4.8 0.0001 39.5 10.4 87 126-241 201-289 (413)
390 COG0287 TyrA Prephenate dehydr 87.8 2 4.3E-05 39.9 7.2 90 128-238 4-95 (279)
391 TIGR02822 adh_fam_2 zinc-bindi 87.8 4.1 8.8E-05 38.3 9.6 90 125-241 164-254 (329)
392 PRK10669 putative cation:proto 87.7 3.9 8.5E-05 41.6 10.0 95 128-242 418-516 (558)
393 PRK12475 thiamine/molybdopteri 87.5 1.8 3.9E-05 41.3 7.0 33 127-160 24-58 (338)
394 COG1565 Uncharacterized conser 87.5 0.88 1.9E-05 43.6 4.7 50 124-173 75-132 (370)
395 PRK03659 glutathione-regulated 87.2 3.9 8.4E-05 42.2 9.7 96 128-243 401-500 (601)
396 COG4017 Uncharacterized protei 87.1 2.1 4.6E-05 37.5 6.4 67 123-210 41-108 (254)
397 PF11312 DUF3115: Protein of u 87.0 1.1 2.5E-05 42.0 5.1 113 128-240 88-241 (315)
398 cd08240 6_hydroxyhexanoate_dh_ 87.0 4.8 0.0001 37.8 9.6 98 126-240 175-273 (350)
399 cd08261 Zn_ADH7 Alcohol dehydr 87.0 5.5 0.00012 37.1 9.9 98 125-240 158-257 (337)
400 PRK15116 sulfur acceptor prote 87.0 2.2 4.9E-05 39.3 7.0 35 126-160 29-64 (268)
401 cd05288 PGDH Prostaglandin deh 86.9 5.4 0.00012 36.8 9.8 97 126-240 145-243 (329)
402 PF06859 Bin3: Bicoid-interact 86.8 0.12 2.7E-06 40.9 -1.2 42 200-241 1-44 (110)
403 cd08265 Zn_ADH3 Alcohol dehydr 86.8 6.8 0.00015 37.6 10.6 100 125-240 202-306 (384)
404 PRK00066 ldh L-lactate dehydro 86.5 8.9 0.00019 36.2 11.0 109 125-241 4-122 (315)
405 PRK05597 molybdopterin biosynt 86.2 1.9 4.1E-05 41.4 6.4 35 126-160 27-62 (355)
406 COG0569 TrkA K+ transport syst 86.2 4.5 9.7E-05 36.2 8.5 71 128-209 1-75 (225)
407 cd01487 E1_ThiF_like E1_ThiF_l 86.2 2.6 5.5E-05 36.2 6.6 31 129-160 1-33 (174)
408 PRK09422 ethanol-active dehydr 86.2 9.3 0.0002 35.5 11.0 98 125-240 161-260 (338)
409 PF02826 2-Hacid_dh_C: D-isome 86.1 20 0.00044 30.5 12.3 89 126-241 35-126 (178)
410 PRK07340 ornithine cyclodeamin 86.1 8.6 0.00019 36.0 10.6 112 83-210 84-198 (304)
411 cd00755 YgdL_like Family of ac 86.0 2 4.2E-05 38.8 6.0 34 127-160 11-45 (231)
412 cd08255 2-desacetyl-2-hydroxye 86.0 6.6 0.00014 35.3 9.7 94 125-241 96-190 (277)
413 COG3129 Predicted SAM-dependen 86.0 1.3 2.8E-05 39.9 4.7 101 110-212 58-165 (292)
414 KOG1227 Putative methyltransfe 86.0 0.59 1.3E-05 43.6 2.6 97 126-236 194-290 (351)
415 cd05281 TDH Threonine dehydrog 86.0 8.3 0.00018 36.1 10.6 100 125-241 162-262 (341)
416 cd08231 MDR_TM0436_like Hypoth 86.0 7.4 0.00016 36.7 10.4 99 126-241 177-280 (361)
417 TIGR02279 PaaC-3OHAcCoADH 3-hy 85.7 2.2 4.9E-05 42.9 6.9 104 126-243 4-122 (503)
418 TIGR00692 tdh L-threonine 3-de 85.7 8.7 0.00019 35.9 10.6 100 125-241 160-261 (340)
419 cd08243 quinone_oxidoreductase 85.6 10 0.00022 34.6 10.8 95 125-240 141-237 (320)
420 COG3315 O-Methyltransferase in 85.5 3.2 6.9E-05 38.9 7.4 109 127-241 93-209 (297)
421 PF01488 Shikimate_DH: Shikima 85.5 6.1 0.00013 32.2 8.3 73 126-210 11-85 (135)
422 cd08284 FDH_like_2 Glutathione 85.2 8.8 0.00019 35.7 10.4 99 125-241 166-266 (344)
423 PRK09496 trkA potassium transp 85.2 8.5 0.00018 37.7 10.7 74 126-210 230-307 (453)
424 COG1086 Predicted nucleoside-d 84.9 4.5 9.7E-05 41.1 8.4 80 126-209 249-334 (588)
425 cd05290 LDH_3 A subgroup of L- 84.6 12 0.00026 35.2 10.8 107 129-242 1-120 (307)
426 PRK07102 short chain dehydroge 84.6 8.4 0.00018 34.0 9.5 75 128-208 2-84 (243)
427 PRK08268 3-hydroxy-acyl-CoA de 84.6 4.2 9.2E-05 41.0 8.3 104 126-243 6-124 (507)
428 KOG0022 Alcohol dehydrogenase, 84.5 8.5 0.00018 36.4 9.5 101 125-240 191-293 (375)
429 cd08296 CAD_like Cinnamyl alco 84.3 8.9 0.00019 35.8 10.0 97 125-241 162-259 (333)
430 PF00106 adh_short: short chai 84.2 9.4 0.0002 31.3 9.1 77 128-210 1-90 (167)
431 TIGR00936 ahcY adenosylhomocys 84.1 27 0.00058 34.3 13.3 87 126-241 194-282 (406)
432 cd01492 Aos1_SUMO Ubiquitin ac 84.1 3.3 7.2E-05 36.3 6.4 32 127-160 21-55 (197)
433 PF02719 Polysacc_synt_2: Poly 84.0 3 6.5E-05 39.0 6.4 76 130-209 1-86 (293)
434 PLN02702 L-idonate 5-dehydroge 84.0 7.4 0.00016 36.8 9.4 100 125-241 180-285 (364)
435 COG5379 BtaA S-adenosylmethion 83.9 2.4 5.2E-05 39.6 5.5 44 126-171 63-106 (414)
436 PRK05396 tdh L-threonine 3-deh 83.8 9.5 0.00021 35.6 9.9 99 126-241 163-263 (341)
437 PRK08644 thiamine biosynthesis 83.8 3.3 7.1E-05 36.8 6.3 33 126-159 27-61 (212)
438 cd08263 Zn_ADH10 Alcohol dehyd 83.6 9.2 0.0002 36.2 9.9 99 126-241 187-287 (367)
439 cd00757 ThiF_MoeB_HesA_family 83.3 2.9 6.2E-05 37.4 5.9 34 127-160 21-55 (228)
440 PRK08618 ornithine cyclodeamin 83.2 17 0.00037 34.3 11.3 113 82-209 85-201 (325)
441 TIGR00027 mthyl_TIGR00027 meth 83.1 16 0.00036 33.4 10.9 112 127-244 82-200 (260)
442 PRK06223 malate dehydrogenase; 83.1 14 0.0003 34.4 10.7 106 128-241 3-119 (307)
443 cd08287 FDH_like_ADH3 formalde 82.9 13 0.00027 34.7 10.4 101 124-241 166-268 (345)
444 PRK15057 UDP-glucose 6-dehydro 82.9 33 0.00071 33.4 13.4 106 129-242 2-118 (388)
445 PRK06949 short chain dehydroge 82.9 21 0.00046 31.5 11.5 78 126-209 8-95 (258)
446 PTZ00117 malate dehydrogenase; 82.8 14 0.0003 34.9 10.5 107 126-241 4-122 (319)
447 COG3510 CmcI Cephalosporin hyd 82.7 8.1 0.00018 34.0 8.0 113 108-241 57-180 (237)
448 PRK07688 thiamine/molybdopteri 82.6 3.6 7.8E-05 39.3 6.5 34 126-160 23-58 (339)
449 cd08262 Zn_ADH8 Alcohol dehydr 82.6 12 0.00026 34.8 10.1 100 125-241 160-264 (341)
450 PRK08213 gluconate 5-dehydroge 82.4 15 0.00033 32.6 10.4 77 127-209 12-98 (259)
451 PF13241 NAD_binding_7: Putati 82.4 13 0.00029 28.7 8.6 88 126-243 6-93 (103)
452 cd08245 CAD Cinnamyl alcohol d 82.4 18 0.00038 33.4 11.1 95 125-241 161-256 (330)
453 cd08279 Zn_ADH_class_III Class 82.3 14 0.00031 35.0 10.6 99 125-240 181-281 (363)
454 cd01483 E1_enzyme_family Super 82.3 7.2 0.00016 31.8 7.5 31 129-160 1-33 (143)
455 COG0677 WecC UDP-N-acetyl-D-ma 82.1 36 0.00077 33.3 12.9 106 128-244 10-131 (436)
456 PRK12921 2-dehydropantoate 2-r 82.1 7 0.00015 36.1 8.2 97 129-239 2-100 (305)
457 cd05291 HicDH_like L-2-hydroxy 82.0 17 0.00037 34.0 10.8 107 128-241 1-117 (306)
458 COG4301 Uncharacterized conser 82.0 12 0.00026 34.2 9.1 111 126-241 78-193 (321)
459 PRK07523 gluconate 5-dehydroge 82.0 18 0.00039 32.1 10.7 78 126-209 9-96 (255)
460 cd05284 arabinose_DH_like D-ar 82.0 12 0.00026 34.7 9.9 98 125-240 166-265 (340)
461 PTZ00082 L-lactate dehydrogena 81.9 24 0.00051 33.4 11.7 70 127-208 6-82 (321)
462 PLN02178 cinnamyl-alcohol dehy 81.9 16 0.00035 35.1 10.9 94 126-241 178-273 (375)
463 TIGR02437 FadB fatty oxidation 81.8 2.3 4.9E-05 44.8 5.2 103 127-243 313-430 (714)
464 cd05213 NAD_bind_Glutamyl_tRNA 81.6 15 0.00032 34.5 10.3 95 126-243 177-274 (311)
465 KOG2015 NEDD8-activating compl 81.5 3.4 7.3E-05 39.1 5.6 98 128-235 41-157 (422)
466 PRK08762 molybdopterin biosynt 81.5 2.9 6.3E-05 40.4 5.5 34 126-159 134-168 (376)
467 PLN02514 cinnamyl-alcohol dehy 81.4 20 0.00043 34.0 11.2 95 126-241 180-275 (357)
468 PRK07454 short chain dehydroge 81.4 24 0.00053 30.9 11.2 78 126-209 5-92 (241)
469 PRK06141 ornithine cyclodeamin 81.1 49 0.0011 31.1 13.7 112 83-209 84-198 (314)
470 cd08282 PFDH_like Pseudomonas 81.0 21 0.00045 34.0 11.3 108 125-240 175-284 (375)
471 PRK05786 fabG 3-ketoacyl-(acyl 80.9 18 0.00039 31.6 10.1 109 126-241 4-135 (238)
472 PRK05225 ketol-acid reductoiso 80.9 5.4 0.00012 39.7 7.1 90 126-240 35-130 (487)
473 PF01555 N6_N4_Mtase: DNA meth 80.9 3.9 8.5E-05 35.5 5.8 47 201-247 1-62 (231)
474 cd01488 Uba3_RUB Ubiquitin act 80.9 3.6 7.8E-05 38.4 5.7 33 129-161 1-34 (291)
475 cd05292 LDH_2 A subgroup of L- 80.6 27 0.00058 32.7 11.6 104 129-241 2-116 (308)
476 TIGR02354 thiF_fam2 thiamine b 80.4 11 0.00024 33.1 8.4 33 126-159 20-54 (200)
477 PRK08945 putative oxoacyl-(acy 80.3 7.8 0.00017 34.3 7.6 78 126-209 11-101 (247)
478 cd01491 Ube1_repeat1 Ubiquitin 80.3 6.2 0.00014 36.8 7.1 32 127-160 19-53 (286)
479 PRK06719 precorrin-2 dehydroge 80.3 3.6 7.9E-05 34.7 5.1 46 115-164 1-48 (157)
480 PRK11730 fadB multifunctional 80.3 2.7 5.8E-05 44.3 5.2 102 128-243 314-430 (715)
481 PF03807 F420_oxidored: NADP o 80.3 6.5 0.00014 29.5 6.1 87 129-238 1-91 (96)
482 PRK05476 S-adenosyl-L-homocyst 80.2 13 0.00028 36.7 9.6 86 126-240 211-298 (425)
483 PRK07417 arogenate dehydrogena 80.2 7.7 0.00017 35.7 7.7 89 129-243 2-92 (279)
484 PF00072 Response_reg: Respons 80.1 12 0.00025 28.3 7.6 76 153-241 1-78 (112)
485 PRK08339 short chain dehydroge 80.1 20 0.00043 32.3 10.3 79 126-209 7-94 (263)
486 PRK11154 fadJ multifunctional 80.1 4.3 9.3E-05 42.7 6.6 103 128-243 310-427 (708)
487 PRK07533 enoyl-(acyl carrier p 80.0 27 0.00058 31.3 11.1 77 126-208 9-96 (258)
488 PRK05867 short chain dehydroge 79.9 22 0.00047 31.6 10.4 78 126-209 8-95 (253)
489 PRK08324 short chain dehydroge 79.6 26 0.00057 36.6 12.3 76 127-209 422-507 (681)
490 TIGR02817 adh_fam_1 zinc-bindi 79.5 20 0.00043 33.2 10.4 96 127-240 149-246 (336)
491 TIGR02441 fa_ox_alpha_mit fatt 79.5 3.2 6.9E-05 43.9 5.4 102 128-243 336-452 (737)
492 TIGR03026 NDP-sugDHase nucleot 79.4 38 0.00082 33.0 12.6 105 129-241 2-120 (411)
493 cd08235 iditol_2_DH_like L-idi 79.3 19 0.0004 33.5 10.2 100 124-240 163-264 (343)
494 cd05286 QOR2 Quinone oxidoredu 79.2 19 0.0004 32.5 9.9 97 125-240 135-234 (320)
495 PRK05600 thiamine biosynthesis 79.2 4.7 0.0001 39.0 6.1 34 126-159 40-74 (370)
496 cd08299 alcohol_DH_class_I_II_ 79.1 32 0.00069 32.8 11.9 100 125-241 189-292 (373)
497 TIGR01963 PHB_DH 3-hydroxybuty 79.0 20 0.00044 31.5 9.9 75 128-209 2-87 (255)
498 PRK08306 dipicolinate synthase 78.8 18 0.0004 33.7 9.8 89 126-241 151-241 (296)
499 PRK06079 enoyl-(acyl carrier p 78.7 47 0.001 29.6 12.2 75 126-208 6-91 (252)
500 PRK09496 trkA potassium transp 78.7 22 0.00048 34.7 10.9 70 129-210 2-75 (453)
No 1
>PLN02366 spermidine synthase
Probab=100.00 E-value=4.8e-51 Score=380.62 Aligned_cols=251 Identities=80% Similarity=1.371 Sum_probs=233.9
Q ss_pred CCCCCCCCCCcccCCeeeccCCCCCCceeEeecceEEEEEeCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHH
Q 020933 38 DSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMIT 117 (319)
Q Consensus 38 ~~~~~~~~~~~~~~~w~~~~~~~~~g~~~~~~~~~vl~~~~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~ 117 (319)
.|++..+++..|.++||+|.+++|+|+.++++|+++|++.+|+||+|.|+++..+|++|+|||.+|+++++++.|++||+
T Consensus 3 ~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~ 82 (308)
T PLN02366 3 APESEAKCHSTVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMIT 82 (308)
T ss_pred CCCCCccccchhhhceEeecccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHH
Confidence 45667788889999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCC
Q 020933 118 HLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP 197 (319)
Q Consensus 118 ~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~ 197 (319)
|++++.++++++||+||||+|+++++++++++..+|++||||++|+++|+++|+....+++++|++++++|+++|++..+
T Consensus 83 h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~ 162 (308)
T PLN02366 83 HLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP 162 (308)
T ss_pred HHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc
Confidence 99999999999999999999999999999987889999999999999999999876545788999999999999998654
Q ss_pred CCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCceeEeEEeecccC
Q 020933 198 EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYP 277 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~ 277 (319)
+++||+||+|+++|.+++..+++.+||+.++++|+|||++++|++++|.+.+.++.+.++++++|+.++.++...||+|+
T Consensus 163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~ 242 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYP 242 (308)
T ss_pred CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcC
Confidence 57899999999999988888999999999999999999999999999999999999999999999668888888999999
Q ss_pred CCee--EEEEcCC
Q 020933 278 RTFL--PSCSAVN 288 (319)
Q Consensus 278 ~g~~--~~~S~~~ 288 (319)
+|.| ++||++.
T Consensus 243 ~g~w~f~~as~~~ 255 (308)
T PLN02366 243 SGVIGFVLCSKEG 255 (308)
T ss_pred CCceEEEEEECCC
Confidence 9877 8888873
No 2
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-52 Score=372.86 Aligned_cols=260 Identities=55% Similarity=0.917 Sum_probs=245.7
Q ss_pred cCCCCCCCCCCcccCCeeeccCC---CCCCceeEeecceEEEEEeCCCccEEEEEecCCeeEEEEcCeEeecccchhHHH
Q 020933 37 MDSNKQPDCISSVIPGWFSEISP---MWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQ 113 (319)
Q Consensus 37 ~~~~~~~~~~~~~~~~w~~~~~~---~~~g~~~~~~~~~vl~~~~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~ 113 (319)
..+.....+++.+.+|||+|+.+ +|||++++++++++|++++|.||++.||++..||++|++||.+|++++|++.|+
T Consensus 29 ~~q~~~~s~h~~i~~GwF~e~~~~~~i~pg~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yq 108 (337)
T KOG1562|consen 29 FPQLELESSHPSIENGWFAEIHNKKDIWPGQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQ 108 (337)
T ss_pred chhhhhccccCcccCCeEeeecCCCCCCCCceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccce
Confidence 34456678999999999999997 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHH
Q 020933 114 EMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFL 193 (319)
Q Consensus 114 e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l 193 (319)
+|++|+|+++|++|++||+||+|+|++.++..+|..+++|+.+|||..++++.++|++.++.+++++++.++.||+..|+
T Consensus 109 emi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl 188 (337)
T KOG1562|consen 109 EMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL 188 (337)
T ss_pred eeeeccccccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCceeEeEEee
Q 020933 194 KAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTV 273 (319)
Q Consensus 194 ~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~v 273 (319)
+..+.++||+||+|+++|.+++..+|.+.+|+.+.+.||+||+++++.+|.|.+.+.+++..+.++.+|+ .+.|.++.+
T Consensus 189 ~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~-~t~ya~ttv 267 (337)
T KOG1562|consen 189 EDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFD-LTAYAITTV 267 (337)
T ss_pred HHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcC-ccceeeecC
Confidence 9876789999999999999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred cccCCCee--EEEEcCCCCCCCCccC
Q 020933 274 PTYPRTFL--PSCSAVNSDLSPSMPS 297 (319)
Q Consensus 274 P~~~~g~~--~~~S~~~~~~~~~~~~ 297 (319)
|+||+|.+ ++||+..++.++..|-
T Consensus 268 PTypsg~igf~l~s~~~~~~~~~~p~ 293 (337)
T KOG1562|consen 268 PTYPSGRIGFMLCSKLKPDGKYKTPG 293 (337)
T ss_pred CCCccceEEEEEecccCCCCCccCCC
Confidence 99999988 9999766666655443
No 3
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=100.00 E-value=1.1e-47 Score=348.57 Aligned_cols=235 Identities=43% Similarity=0.792 Sum_probs=216.8
Q ss_pred CeeeccCC-CCCCceeEeecceEEEEEeCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHHhccccCCCCCcee
Q 020933 52 GWFSEISP-MWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKV 130 (319)
Q Consensus 52 ~w~~~~~~-~~~g~~~~~~~~~vl~~~~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~V 130 (319)
+||+|..+ .|||.+++|+++++|++.+|+||+|.|++++.+|++|+|||.+|+++++++.|+|+|+|+|++.++++++|
T Consensus 1 ~w~~e~~~~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~V 80 (246)
T PF01564_consen 1 MWFTEYYSQFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRV 80 (246)
T ss_dssp TEEEEEET-TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EE
T ss_pred CeEEEEeccCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCce
Confidence 69999987 77999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCC-CccEEEEcCC
Q 020933 131 LVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEG-TYDAVIVDSS 209 (319)
Q Consensus 131 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~-~fDvIi~D~~ 209 (319)
|+||+|+|+.+++++++++..+|++||||+.|+++|+++|+.....++++|++++++|++.|+++. .+ +||+||+|++
T Consensus 81 LiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-~~~~yDvIi~D~~ 159 (246)
T PF01564_consen 81 LIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-QEEKYDVIIVDLT 159 (246)
T ss_dssp EEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-SST-EEEEEEESS
T ss_pred EEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-cCCcccEEEEeCC
Confidence 999999999999999998889999999999999999999987655577899999999999999987 45 9999999999
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCceeEeEEeecccCCCee--EEEEcC
Q 020933 210 DPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFL--PSCSAV 287 (319)
Q Consensus 210 ~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~~--~~~S~~ 287 (319)
+|.+++..+++.+||+.++++|+|||++++|..+++.+...++.+.++++++|+ .+.++...+|+|++++| .+||+.
T Consensus 160 dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~~~vP~~~~~~~~~~~~s~~ 238 (246)
T PF01564_consen 160 DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPYTAYVPSYGSGWWSFASASKD 238 (246)
T ss_dssp STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEEEEECTTSCSSEEEEEEEESS
T ss_pred CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC-ceEEEEEEcCeecccceeEEEEeCC
Confidence 999888889999999999999999999999998888899999999999999995 78888999999999877 666665
Q ss_pred C
Q 020933 288 N 288 (319)
Q Consensus 288 ~ 288 (319)
.
T Consensus 239 ~ 239 (246)
T PF01564_consen 239 I 239 (246)
T ss_dssp T
T ss_pred C
Confidence 4
No 4
>PRK00536 speE spermidine synthase; Provisional
Probab=100.00 E-value=4.1e-47 Score=345.15 Aligned_cols=217 Identities=17% Similarity=0.217 Sum_probs=196.7
Q ss_pred CeeeccCCCCCCceeEeecceEEEEEeCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHHhccccCCCCCceee
Q 020933 52 GWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVL 131 (319)
Q Consensus 52 ~w~~~~~~~~~g~~~~~~~~~vl~~~~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL 131 (319)
.||+|.. |||.+++++++++|++++|+||+|.|+++..|||+|+|| ..|+++.||+.|||||+|+|++.|++|++||
T Consensus 1 ~w~~e~~--~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VL 77 (262)
T PRK00536 1 MWITQEI--TPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVL 77 (262)
T ss_pred CceEEec--CCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEE
Confidence 3999986 589999999999999999999999999999999999999 6667999999999999999999999999999
Q ss_pred EeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCC
Q 020933 132 VIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDP 211 (319)
Q Consensus 132 ~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~ 211 (319)
+||+|+|+.+|+++||+ .+|++||||++|+++||+++|..+.+++|||++++. ++.+...++||+||+|+.
T Consensus 78 IiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~~~~~fDVIIvDs~-- 148 (262)
T PRK00536 78 IVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDLDIKKYDLIICLQE-- 148 (262)
T ss_pred EEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhccCCcCCEEEEcCC--
Confidence 99999999999999996 499999999999999999999988789999999997 233332478999999965
Q ss_pred CCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCceeEeEEeecccCCCee--EEEEcCCC
Q 020933 212 IGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFL--PSCSAVNS 289 (319)
Q Consensus 212 ~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~~--~~~S~~~~ 289 (319)
++.+||+.++++|+|||++++|+++++++.+.+..+.++++++|+ .+.+|...+|+| |.| ++||++..
T Consensus 149 -------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~-~v~~y~~~vp~~--g~wgf~~aS~~~~ 218 (262)
T PRK00536 149 -------PDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS-IAMPFVAPLRIL--SNKGYIYASFKTH 218 (262)
T ss_pred -------CChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC-ceEEEEecCCCc--chhhhheecCCCC
Confidence 357899999999999999999999999999999999999999994 688888899998 455 88998744
Q ss_pred C
Q 020933 290 D 290 (319)
Q Consensus 290 ~ 290 (319)
+
T Consensus 219 p 219 (262)
T PRK00536 219 P 219 (262)
T ss_pred C
Confidence 4
No 5
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-46 Score=345.80 Aligned_cols=234 Identities=44% Similarity=0.813 Sum_probs=220.3
Q ss_pred cCCeeeccCCCCCCceeEeecceEEEEEeCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHHhccccCCCCCce
Q 020933 50 IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKK 129 (319)
Q Consensus 50 ~~~w~~~~~~~~~g~~~~~~~~~vl~~~~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~ 129 (319)
++.||.|.++ |+.++.+++++++++++|+||+|.++++..+|++|++||..|+++++++.|+||++|+++..|+++++
T Consensus 2 ~~~w~~e~~~--~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~ 79 (282)
T COG0421 2 ADMWFTELYD--PGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKR 79 (282)
T ss_pred Cccceeeeec--ccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCe
Confidence 4679999997 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCC
Q 020933 130 VLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSS 209 (319)
Q Consensus 130 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~ 209 (319)
||+||+|+|++++++++|.+.+++++||||++|+++|+++|+..+.+..|||++++++|+.+|+++. .++||+||+|++
T Consensus 80 VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-~~~fDvIi~D~t 158 (282)
T COG0421 80 VLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-EEKFDVIIVDST 158 (282)
T ss_pred EEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-CCcCCEEEEcCC
Confidence 9999999999999999999999999999999999999999999865555899999999999999987 458999999999
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCceeEeEEeecccCCCee--EEEEcC
Q 020933 210 DPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFL--PSCSAV 287 (319)
Q Consensus 210 ~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~~--~~~S~~ 287 (319)
+|.+++..|++.+||+.|+++|+++|++++|++++|++.+.+....+.++++|+ .+.++...+|+|++|.| +++|.+
T Consensus 159 dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~-~~~~~~~~ipt~~~g~~~f~~~s~~ 237 (282)
T COG0421 159 DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFS-IVPPYVAPIPTYPSGFWGFIVASFN 237 (282)
T ss_pred CCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhcc-ccccceeccceecCCceEEEEeecC
Confidence 999999999999999999999999999999999999999899999999999994 67777789999999966 888843
No 6
>PRK00811 spermidine synthase; Provisional
Probab=100.00 E-value=3.2e-45 Score=339.19 Aligned_cols=233 Identities=43% Similarity=0.808 Sum_probs=215.5
Q ss_pred CCeeeccCCCCCCceeEeecceEEEEEeCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHHhccccCCCCCcee
Q 020933 51 PGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKV 130 (319)
Q Consensus 51 ~~w~~~~~~~~~g~~~~~~~~~vl~~~~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~V 130 (319)
+.||+|.. +||.++.++++++|++.+|+||+|.|+++..+|++|+|||.+|+++++++.|||+++|+|++.++++++|
T Consensus 3 ~~w~~e~~--~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~V 80 (283)
T PRK00811 3 ELWFTETL--TDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRV 80 (283)
T ss_pred Ccceeecc--CCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEE
Confidence 46999986 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCC-CCCCCeEEEEcChHHHHHhCCCCCccEEEEcCC
Q 020933 131 LVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVG-FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSS 209 (319)
Q Consensus 131 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~-~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~ 209 (319)
|+||||+|.++++++++++..+|++||+|+++++.|+++|+..+.+ ++++|++++++|++++++.. +++||+||+|++
T Consensus 81 L~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-~~~yDvIi~D~~ 159 (283)
T PRK00811 81 LIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-ENSFDVIIVDST 159 (283)
T ss_pred EEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-CCcccEEEECCC
Confidence 9999999999999999877889999999999999999999865433 36899999999999999764 679999999999
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCceeEeEEeecccCCCee--EEEEcC
Q 020933 210 DPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFL--PSCSAV 287 (319)
Q Consensus 210 ~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~~--~~~S~~ 287 (319)
+|.+++.++++.+||+.++++|+|||+++++.++++.+.+.+..+.++++++|+ .+.++...+|+||+|.| ++||++
T Consensus 160 dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~~~~vp~~~~~~w~f~~as~~ 238 (283)
T PRK00811 160 DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFP-IVRPYQAAIPTYPSGLWSFTFASKN 238 (283)
T ss_pred CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCC-CEEEEEeECCcccCchheeEEeecC
Confidence 998888889999999999999999999999999888888899999999999994 68888889999999876 888885
No 7
>PLN02823 spermine synthase
Probab=100.00 E-value=2.1e-43 Score=332.45 Aligned_cols=235 Identities=36% Similarity=0.602 Sum_probs=212.3
Q ss_pred cCCeeeccCCCCCCceeEeecceEEEEEeCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHHhccccCCCCCce
Q 020933 50 IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKK 129 (319)
Q Consensus 50 ~~~w~~~~~~~~~g~~~~~~~~~vl~~~~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~ 129 (319)
++.||+|.. +++..++++++++|++.+|+||+|.|+++..+|++|+|||.+|+++.+++.|+|+|+|++++.+++|++
T Consensus 29 ~~~w~~e~~--~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~qs~~~de~~YhE~l~h~~l~~~~~pk~ 106 (336)
T PLN02823 29 KSLWYEEEI--EDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQSAEADEFVYHESLVHPALLHHPNPKT 106 (336)
T ss_pred cCeeEeecc--CCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccccccchHHHHHHHHHhHHHhhCCCCCE
Confidence 567999986 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCC
Q 020933 130 VLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSS 209 (319)
Q Consensus 130 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~ 209 (319)
||+||+|+|+++++++++.+..+|++||||++++++|+++|+.....++++|++++++|+++|++.. +++||+||+|++
T Consensus 107 VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-~~~yDvIi~D~~ 185 (336)
T PLN02823 107 VFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-DEKFDVIIGDLA 185 (336)
T ss_pred EEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-CCCccEEEecCC
Confidence 9999999999999999988788999999999999999999987655577899999999999999765 678999999998
Q ss_pred CCC--CCccccchHHHHH-HHHHhcCCCcEEEEecCC--cccChHHHHHHHHHHHhhcCCceeEeEEeecccCCCee-EE
Q 020933 210 DPI--GPAQELFEKPFFE-SVAKALRPGGVVSTQAES--IWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFL-PS 283 (319)
Q Consensus 210 ~~~--~~~~~l~~~~f~~-~~~~~LkpgG~lv~~~~~--~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~~-~~ 283 (319)
+|. +++.+|++.+||+ .++++|+|||++++|..+ .+.+.+.+..++++++++|+ .+..+...+|+|+++|- ++
T Consensus 186 dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~-~v~~y~~~vPsf~~~w~f~~ 264 (336)
T PLN02823 186 DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFK-YVVPYTAHVPSFADTWGWVM 264 (336)
T ss_pred CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCC-CEEEEEeecCCCCCceEEEE
Confidence 875 4567899999999 999999999999999876 34467788999999999995 67777789999987533 88
Q ss_pred EEcCC
Q 020933 284 CSAVN 288 (319)
Q Consensus 284 ~S~~~ 288 (319)
||+.+
T Consensus 265 aS~~~ 269 (336)
T PLN02823 265 ASDHP 269 (336)
T ss_pred EeCCc
Confidence 99863
No 8
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=100.00 E-value=1.4e-42 Score=319.78 Aligned_cols=231 Identities=46% Similarity=0.857 Sum_probs=213.5
Q ss_pred eeeccCCCCCCceeEeecceEEEEEeCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeE
Q 020933 53 WFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLV 132 (319)
Q Consensus 53 w~~~~~~~~~g~~~~~~~~~vl~~~~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~ 132 (319)
||+|.. |||.+++++++++|++.+|+||+|.|+++..+|++|+|||.+|+++.+++.|++|++|++++.++++++||+
T Consensus 1 w~~~~~--~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~ 78 (270)
T TIGR00417 1 WFTEYH--DKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLV 78 (270)
T ss_pred Cceeec--CCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEE
Confidence 899885 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCC
Q 020933 133 IGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPI 212 (319)
Q Consensus 133 IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~ 212 (319)
||||+|+++++++++.+..++++||+|+++++.++++++.....+++++++++.+|++++++.. +++||+||+|.+++.
T Consensus 79 iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 79 IGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVIIVDSTDPV 157 (270)
T ss_pred EcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEEEEeCCCCC
Confidence 9999999999999987678999999999999999999876544456789999999999999875 679999999999888
Q ss_pred CCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCceeEeEEeecccCCCee--EEEEcC
Q 020933 213 GPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFL--PSCSAV 287 (319)
Q Consensus 213 ~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~~--~~~S~~ 287 (319)
++...+++.+|++.++++|+|||++++++++++.....+..+.++++++|+ .+..+.+.+|+|++|.| ++||+.
T Consensus 158 ~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~-~v~~~~~~vp~~~~g~~~~~~as~~ 233 (270)
T TIGR00417 158 GPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFP-ITEYYTANIPTYPSGLWTFTIGSKN 233 (270)
T ss_pred CcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCC-CeEEEEEEcCccccchhEEEEEECC
Confidence 888889999999999999999999999998889888999999999999995 68888899999998866 888883
No 9
>PRK01581 speE spermidine synthase; Validated
Probab=100.00 E-value=2.5e-40 Score=310.53 Aligned_cols=225 Identities=28% Similarity=0.410 Sum_probs=197.8
Q ss_pred cceEEEEEeCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCC
Q 020933 70 VEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSS 149 (319)
Q Consensus 70 ~~~vl~~~~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~ 149 (319)
+.++|++++|+||+|.|+++..+ .|+|||.+|+++.||+.|||+|+|+++..+++|++||+||||+|+.+++++++++
T Consensus 96 ~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~ 173 (374)
T PRK01581 96 EHTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYET 173 (374)
T ss_pred ccCEEEecCCCCceEEEEEcCCE--EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCC
Confidence 46899999999999999999876 6999999999999999999999999999999999999999999999999999988
Q ss_pred CceEEEEECChHHHHHHHhcc--cccc-CCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCC-CccccchHHHHH
Q 020933 150 VEKIDICEIDKMVVDVSKQFF--PDVA-VGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIG-PAQELFEKPFFE 225 (319)
Q Consensus 150 ~~~v~~VEid~~vi~~ak~~~--~~~~-~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~-~~~~l~~~~f~~ 225 (319)
..+|++||||++|+++|++++ +... ..++++|++++++|+++|+... .++||+||+|+++|.. ....+++.+||+
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-~~~YDVIIvDl~DP~~~~~~~LyT~EFy~ 252 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-SSLYDVIIIDFPDPATELLSTLYTSELFA 252 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-CCCccEEEEcCCCccccchhhhhHHHHHH
Confidence 899999999999999999843 3222 2467899999999999999865 6789999999998765 367899999999
Q ss_pred HHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCceeEeEEeecccCCCee-EEEEcCCCCCCCCccCcc
Q 020933 226 SVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFL-PSCSAVNSDLSPSMPSLH 299 (319)
Q Consensus 226 ~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~~-~~~S~~~~~~~~~~~~l~ 299 (319)
.++++|+|||+++++.++++.+...+..+.++++++|. .+..+.+.+|+|++.|- .+||+.+..++ ..+.|.
T Consensus 253 ~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~-~v~~y~t~vPsyg~~WgF~~as~~~~~~~-~~~~~~ 325 (374)
T PRK01581 253 RIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGL-TVKSYHTIVPSFGTDWGFHIAANSAYVLD-QIEQLY 325 (374)
T ss_pred HHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCC-ceEEEEEecCCCCCceEEEEEeCCccccc-ccceee
Confidence 99999999999999999998888888889999999994 67788889999976544 88888766666 555554
No 10
>PRK03612 spermidine synthase; Provisional
Probab=100.00 E-value=2.8e-34 Score=286.35 Aligned_cols=220 Identities=26% Similarity=0.487 Sum_probs=193.7
Q ss_pred eeEeecceEEEEEeCCCccEEEEEecC-Ce--eEEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccHHH
Q 020933 65 AHSLKVEKILFQGKSDYQNVMVFQSST-YG--KVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVL 141 (319)
Q Consensus 65 ~~~~~~~~vl~~~~s~yq~i~v~~~~~-~g--~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~ 141 (319)
.+.+.+++++++.+|+||+|.|++++. +| +.|++||.+|.++.|++.|++++.|++++.++++++||+||||+|..+
T Consensus 233 ~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~ 312 (521)
T PRK03612 233 EQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVLVLGGGDGLAL 312 (521)
T ss_pred HhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHH
Confidence 445678899999999999999999876 46 899999999999999999999999999998999999999999999999
Q ss_pred HHHHhcCCCceEEEEECChHHHHHHHhc--ccccc-CCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCC-ccc
Q 020933 142 REVSRHSSVEKIDICEIDKMVVDVSKQF--FPDVA-VGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGP-AQE 217 (319)
Q Consensus 142 ~~l~~~~~~~~v~~VEid~~vi~~ak~~--~~~~~-~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~-~~~ 217 (319)
+++++++++.+|++||+|+++++.++++ ++... ..++++|++++++|++++++.. +++||+|++|.+++..+ ..+
T Consensus 313 ~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~fDvIi~D~~~~~~~~~~~ 391 (521)
T PRK03612 313 REVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEKFDVIIVDLPDPSNPALGK 391 (521)
T ss_pred HHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCCCCEEEEeCCCCCCcchhc
Confidence 9999987668999999999999999994 44432 2357899999999999999865 57999999999888765 367
Q ss_pred cchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhh-cCCceeEeEEeecccCCCee--EEEEcCCC
Q 020933 218 LFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQI-FKGSVNYAWTTVPTYPRTFL--PSCSAVNS 289 (319)
Q Consensus 218 l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~v~~~~~~vP~~~~g~~--~~~S~~~~ 289 (319)
+++.+||+.++++|||||++++|..+++.+.+.+..+.++++++ | .+..+...+|+| |.| ++||++..
T Consensus 392 L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf--~v~~~~~~vps~--g~w~f~~as~~~~ 462 (521)
T PRK03612 392 LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL--ATTPYHVNVPSF--GEWGFVLAGAGAR 462 (521)
T ss_pred cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC--EEEEEEeCCCCc--chhHHHeeeCCCC
Confidence 99999999999999999999999999998889999999999999 8 477777889999 455 88888643
No 11
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=100.00 E-value=3.4e-33 Score=257.00 Aligned_cols=218 Identities=28% Similarity=0.429 Sum_probs=191.8
Q ss_pred ecceEEEEEeCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcC
Q 020933 69 KVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHS 148 (319)
Q Consensus 69 ~~~~vl~~~~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~ 148 (319)
-.++++|..+|+||+|+|-+.... ..|+|||.+|.+.+||..|||.+++.++...+..++||+||+|+|-.+++++|++
T Consensus 233 ygdeIIh~~qspYQ~iVvTr~g~d-~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP 311 (508)
T COG4262 233 YGDEIIHAIQSPYQRIVVTRRGDD-LRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYP 311 (508)
T ss_pred hcCceeeeccCccceEEEEEecCc-eEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCC
Confidence 348999999999999988876543 6799999999999999999999999999988889999999999999999999998
Q ss_pred CCceEEEEECChHHHHHHHhc--cccc-cCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCc-cccchHHHH
Q 020933 149 SVEKIDICEIDKMVVDVSKQF--FPDV-AVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPA-QELFEKPFF 224 (319)
Q Consensus 149 ~~~~v~~VEid~~vi~~ak~~--~~~~-~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~-~~l~~~~f~ 224 (319)
..++|+.||+||+|++++++. +... ...+.|||+++++.|+.+|++.. .+.||+||+|..||..+. .++|+.+||
T Consensus 312 ~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a-~~~fD~vIVDl~DP~tps~~rlYS~eFY 390 (508)
T COG4262 312 QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA-ADMFDVVIVDLPDPSTPSIGRLYSVEFY 390 (508)
T ss_pred CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-cccccEEEEeCCCCCCcchhhhhhHHHH
Confidence 899999999999999999954 2222 23578999999999999999986 679999999999998764 679999999
Q ss_pred HHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCceeEeEEeecccCCCeeEEEEcCCC
Q 020933 225 ESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFLPSCSAVNS 289 (319)
Q Consensus 225 ~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~~~~~S~~~~ 289 (319)
..++++|+++|++++|+++++..++.+..+.+++|+.= ..+..+...+|+++..-+++|++.+.
T Consensus 391 ~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG-~~~~Pyhv~VPTFGeWGf~l~~~~~~ 454 (508)
T COG4262 391 RLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAG-YRVWPYHVHVPTFGEWGFILAAPGDA 454 (508)
T ss_pred HHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCc-ceeeeeEEecCcccccceeecccccC
Confidence 99999999999999999999999999999999999874 34666667999996444488888743
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.94 E-value=2.8e-25 Score=203.73 Aligned_cols=201 Identities=21% Similarity=0.321 Sum_probs=158.1
Q ss_pred EEEEeCCCccEEEEEecCCeeEEEEcC-eEeec------ccchhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHh
Q 020933 74 LFQGKSDYQNVMVFQSSTYGKVLILDG-VIQLT------ERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSR 146 (319)
Q Consensus 74 l~~~~s~yq~i~v~~~~~~g~~L~ldg-~~q~~------~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~ 146 (319)
+.-.++.|+.|.|+|... .|.|.+|+ ..|+. ....+.|+++|... +...+++++||+||||+|.+++.+++
T Consensus 9 ~~~~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~~-l~~~~~~~~vL~IG~G~G~l~~~l~~ 86 (262)
T PRK04457 9 LRPAKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMMGF-LLFNPRPQHILQIGLGGGSLAKFIYT 86 (262)
T ss_pred hccccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHHHH-HhcCCCCCEEEEECCCHhHHHHHHHH
Confidence 344567899999998764 57888987 46764 22346788866432 22346788999999999999999998
Q ss_pred cCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHH
Q 020933 147 HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFES 226 (319)
Q Consensus 147 ~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~ 226 (319)
+.+..+|++||+||++++.|+++|... ..+++++++++|+.+++... .++||+|++|.++....+.++.+.+|++.
T Consensus 87 ~~p~~~v~~VEidp~vi~~A~~~f~~~---~~~~rv~v~~~Da~~~l~~~-~~~yD~I~~D~~~~~~~~~~l~t~efl~~ 162 (262)
T PRK04457 87 YLPDTRQTAVEINPQVIAVARNHFELP---ENGERFEVIEADGAEYIAVH-RHSTDVILVDGFDGEGIIDALCTQPFFDD 162 (262)
T ss_pred hCCCCeEEEEECCHHHHHHHHHHcCCC---CCCCceEEEECCHHHHHHhC-CCCCCEEEEeCCCCCCCccccCcHHHHHH
Confidence 877889999999999999999998653 12579999999999999865 57899999998876666677888999999
Q ss_pred HHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCceeEeEEeecccCCCee-EEEEcC
Q 020933 227 VAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFL-PSCSAV 287 (319)
Q Consensus 227 ~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~~-~~~S~~ 287 (319)
++++|+|||++++|. |.....+..++++++++|++.+ + .+|....+|+ ++|++.
T Consensus 163 ~~~~L~pgGvlvin~---~~~~~~~~~~l~~l~~~F~~~~--~--~~~~~~~~N~v~~a~~~ 217 (262)
T PRK04457 163 CRNALSSDGIFVVNL---WSRDKRYDRYLERLESSFEGRV--L--ELPAESHGNVAVFAFKS 217 (262)
T ss_pred HHHhcCCCcEEEEEc---CCCchhHHHHHHHHHHhcCCcE--E--EEecCCCccEEEEEECC
Confidence 999999999999984 4445567888999999996433 2 3455555666 777764
No 13
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.70 E-value=6.4e-16 Score=135.72 Aligned_cols=166 Identities=17% Similarity=0.293 Sum_probs=136.8
Q ss_pred eeEEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhcccc
Q 020933 93 GKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172 (319)
Q Consensus 93 g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~ 172 (319)
-..+.+||.-+.....+..|...+..+.+.....+.+|||.+.|-|..+.+.++.. ..+|..||.||.|+++|+-+=
T Consensus 101 ~PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNP-- 177 (287)
T COG2521 101 APTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNP-- 177 (287)
T ss_pred CCeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCC--
Confidence 36899999988877766777888877776666678999999999999999999984 568999999999999998652
Q ss_pred ccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC---cccChH
Q 020933 173 VAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES---IWLHMH 249 (319)
Q Consensus 173 ~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~---~~~~~~ 249 (319)
++.++...+++++.||+.++++++++++||+||.|++- .+.+.+||+.+||++++|+|||||.++=-++. .+...+
T Consensus 178 wSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPR-fS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d 256 (287)
T COG2521 178 WSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPR-FSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLD 256 (287)
T ss_pred CCccccccccEEecccHHHHHhcCCccccceEeeCCCc-cchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCC
Confidence 12234456899999999999999988899999999865 34456899999999999999999998755543 455677
Q ss_pred HHHHHHHHHHhh-c
Q 020933 250 IIEDIVANCRQI-F 262 (319)
Q Consensus 250 ~~~~~~~~l~~~-F 262 (319)
..+.+.+.++++ |
T Consensus 257 ~~~gVa~RLr~vGF 270 (287)
T COG2521 257 LPKGVAERLRRVGF 270 (287)
T ss_pred hhHHHHHHHHhcCc
Confidence 888999999987 6
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.66 E-value=4e-16 Score=123.95 Aligned_cols=109 Identities=19% Similarity=0.290 Sum_probs=84.5
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~ 206 (319)
+.+|||||||+|.++.++++..+..+|++||+|+.+++.+++++... + ..++++++++|+ .+.... .++||+|++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~-~~~~i~~~~~d~-~~~~~~-~~~~D~v~~ 76 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE--G-LSDRITFVQGDA-EFDPDF-LEPFDLVIC 76 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT--T-TTTTEEEEESCC-HGGTTT-SSCEEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc--C-CCCCeEEEECcc-ccCccc-CCCCCEEEE
Confidence 46999999999999999999545688999999999999999998432 1 347999999998 433333 567999998
Q ss_pred cC-CCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 207 DS-SDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 207 D~-~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
.. ........ -...++++.+.+.|+|||+++++.
T Consensus 77 ~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 76 22111111 123578999999999999999864
No 15
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.60 E-value=4.7e-14 Score=127.03 Aligned_cols=131 Identities=20% Similarity=0.276 Sum_probs=105.7
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
+..++|||||||+|.++..++++.+..+|++||+++++.+.|+++...+ ++. .|++++++|..++.+.....+||+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l~-~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PLE-ERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cch-hceeEehhhHHHhhhcccccccCEE
Confidence 3478999999999999999999866689999999999999999998764 343 5999999999999876645679999
Q ss_pred EEcCCCCCCCc--------------cccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHh-hcC
Q 020933 205 IVDSSDPIGPA--------------QELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ-IFK 263 (319)
Q Consensus 205 i~D~~~~~~~~--------------~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~-~F~ 263 (319)
|++++...... ..+.-.++++.+.++|||||.+++ .+..+.+.+++..+++ .|.
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-----V~r~erl~ei~~~l~~~~~~ 188 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-----VHRPERLAEIIELLKSYNLE 188 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-----EecHHHHHHHHHHHHhcCCC
Confidence 99886421110 123346899999999999999996 4567788888998887 463
No 16
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.57 E-value=1.9e-14 Score=115.25 Aligned_cols=111 Identities=26% Similarity=0.482 Sum_probs=88.2
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~ 206 (319)
+.+|||+|||+|.++..+++.. ..+++++|+|+..++.++++++.. +. ..+++++++|..+.....+.++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~--~~-~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN--GL-DDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC--TT-TTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc--cC-CceEEEEECchhhchhhccCceeEEEEE
Confidence 3589999999999999999886 689999999999999999998875 22 3579999999999885555789999999
Q ss_pred cCCCCCCC----ccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 207 DSSDPIGP----AQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 207 D~~~~~~~----~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|++..... ........|++.+.++|+|||++++..
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 88764221 112234689999999999999998754
No 17
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.55 E-value=2.3e-14 Score=129.33 Aligned_cols=162 Identities=18% Similarity=0.227 Sum_probs=77.7
Q ss_pred CCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.++.+|||+|||+|.++..++++ .+..+|+++|+++.|++.+++.+... ...+++++++|+.+.. .++++||+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~----~~~~i~~v~~da~~lp--~~d~sfD~ 119 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE----GLQNIEFVQGDAEDLP--FPDNSFDA 119 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT----T--SEEEEE-BTTB----S-TT-EEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh----CCCCeeEEEcCHHHhc--CCCCceeE
Confidence 45679999999999999999886 44579999999999999999988754 2348999999998764 24789999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCceeEeEEeecccCCCeeEE
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFLPS 283 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~~~~ 283 (319)
|++-..-...+. ....++++.|+|||||.+++-.-+. .....+..+. ..| ....+|... -+
T Consensus 120 v~~~fglrn~~d----~~~~l~E~~RVLkPGG~l~ile~~~-p~~~~~~~~~----~~y------~~~ilP~~g----~l 180 (233)
T PF01209_consen 120 VTCSFGLRNFPD----RERALREMYRVLKPGGRLVILEFSK-PRNPLLRALY----KFY------FKYILPLIG----RL 180 (233)
T ss_dssp EEEES-GGG-SS----HHHHHHHHHHHEEEEEEEEEEEEEB--SSHHHHHHH----HH----------------------
T ss_pred EEHHhhHHhhCC----HHHHHHHHHHHcCCCeEEEEeeccC-CCCchhhcee----eee------ecccccccc----cc
Confidence 997432211111 3568999999999999988753211 1112222222 222 112456443 22
Q ss_pred EEcCCCCCCCCccCccCCCcccccccch
Q 020933 284 CSAVNSDLSPSMPSLHGHPFPIRIKWCM 311 (319)
Q Consensus 284 ~S~~~~~~~~~~~~l~~~p~~~~~~~~~ 311 (319)
.+++..++.++..++..+|.+.++...+
T Consensus 181 ~~~~~~~Y~yL~~Si~~f~~~~~~~~~l 208 (233)
T PF01209_consen 181 LSGDREAYRYLPESIRRFPSPEELKELL 208 (233)
T ss_dssp ----------------------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 3344457888889998888888887665
No 18
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.54 E-value=1.5e-14 Score=124.32 Aligned_cols=108 Identities=20% Similarity=0.334 Sum_probs=85.7
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
..++|||||||+|.++..++++.+..+|+++|+++.+++.+++++..+ +.+ +++++..|..+.+. +++||+|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n--~~~--~v~~~~~d~~~~~~---~~~fD~Iv 103 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN--GLE--NVEVVQSDLFEALP---DGKFDLIV 103 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT--TCT--TEEEEESSTTTTCC---TTCEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--Ccc--cccccccccccccc---ccceeEEE
Confidence 567999999999999999999877778999999999999999998765 222 39999999877643 58999999
Q ss_pred EcCCCCCCCc-cccchHHHHHHHHHhcCCCcEEEEe
Q 020933 206 VDSSDPIGPA-QELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 206 ~D~~~~~~~~-~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
++++...+.. ......+|++.+.++|+|||.+++.
T Consensus 104 ~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 104 SNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp E---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 9987544432 1223568999999999999988654
No 19
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.54 E-value=9.7e-14 Score=121.84 Aligned_cols=128 Identities=20% Similarity=0.346 Sum_probs=99.8
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCccEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fDvI 204 (319)
...+|||||||+|.++..+++..+..++++||+++.+++.|+++.... + -.+++++++|+.+++... +++.+|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~--~--l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL--G--LKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh--C--CCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 446999999999999999998777789999999999999999877643 2 248999999998876432 34689999
Q ss_pred EEcCCCCCCCc----cccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhh
Q 020933 205 IVDSSDPIGPA----QELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQI 261 (319)
Q Consensus 205 i~D~~~~~~~~----~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 261 (319)
+++.++|+... ..+...++++.+.++|||||.|.+.+.. ......+.+.+.+.
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~----~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN----EPLFEDMLKVLSEN 148 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC----HHHHHHHHHHHHhC
Confidence 99988876432 2355578999999999999999987643 33455555555543
No 20
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.54 E-value=1.7e-13 Score=121.16 Aligned_cols=127 Identities=21% Similarity=0.285 Sum_probs=95.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHH-hCCCCCccEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK-AVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~-~~~~~~fDvI 204 (319)
+..+|||||||+|..+..+++..+..+|++||+++.+++.+++++... .-++++++++|+.+.+. ..++++||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~----~~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE----GLTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc----CCCCEEEEecCHHHHHHHHcCccccceE
Confidence 457999999999999999988766678999999999999999887653 22579999999833333 2346789999
Q ss_pred EEcCCCCCCCc----cccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHh
Q 020933 205 IVDSSDPIGPA----QELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (319)
Q Consensus 205 i~D~~~~~~~~----~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 260 (319)
++...+++... .......+++.+.++|||||++++.+.. ...+..+++.+++
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~----~~~~~~~~~~~~~ 171 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW----EGYAEYMLEVLSA 171 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC----HHHHHHHHHHHHh
Confidence 98766654321 1223468999999999999999986533 3455555555554
No 21
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=6e-13 Score=119.69 Aligned_cols=106 Identities=17% Similarity=0.265 Sum_probs=86.7
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+|||||||||-++..+++..+..+|+++|+++.|++.+++.+... +..+++++++|+.+.. +++++||+|.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~----~~~~i~fv~~dAe~LP--f~D~sFD~vt 124 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK----GVQNVEFVVGDAENLP--FPDNSFDAVT 124 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc----CccceEEEEechhhCC--CCCCccCEEE
Confidence 678999999999999999999876789999999999999999998764 2233999999998764 4689999999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+...-...+ .....+++++|+|||||.+++..
T Consensus 125 ~~fglrnv~----d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 125 ISFGLRNVT----DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred eeehhhcCC----CHHHHHHHHHHhhcCCeEEEEEE
Confidence 744322211 14578999999999999888753
No 22
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.48 E-value=5.7e-13 Score=115.79 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=82.3
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
++.+|||||||+|.++..+++..+..+|++||+|+.+++.++++.... + -.+++++++|+.++. ..++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~--~--~~~i~~i~~d~~~~~---~~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL--G--LNNVEIVNGRAEDFQ---HEEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh--C--CCCeEEEecchhhcc---ccCCccEEE
Confidence 478999999999999999887666678999999999999999887654 2 246999999988752 257899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++.. .. -.++++.+.++|+|||++++..
T Consensus 115 s~~~---~~-----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRAL---AS-----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehhh---hC-----HHHHHHHHHHhcCCCCEEEEEc
Confidence 8751 11 3468899999999999999864
No 23
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.47 E-value=1.4e-12 Score=125.59 Aligned_cols=153 Identities=14% Similarity=0.223 Sum_probs=107.0
Q ss_pred eCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEE
Q 020933 78 KSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICE 157 (319)
Q Consensus 78 ~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VE 157 (319)
..|.|+| +-+...+|..+.++-......++.....+.+. ...++..+|||||||+|.++..+++..+..+|+++|
T Consensus 208 gePlqYI-lG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL----~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVD 282 (423)
T PRK14966 208 GEPVAYI-LGVREFYGRRFAVNPNVLIPRPETEHLVEAVL----ARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASD 282 (423)
T ss_pred CCCceeE-eeeeeecCcEEEeCCCccCCCccHHHHHHHhh----hccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEE
Confidence 4588998 55566788888887666666655433333221 112345699999999999999998766678999999
Q ss_pred CChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCC-------------cccc------
Q 020933 158 IDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGP-------------AQEL------ 218 (319)
Q Consensus 158 id~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~-------------~~~l------ 218 (319)
+|+.+++.|++++... . .+++++.+|..+.... ..++||+|++|++..... ...+
T Consensus 283 iS~~ALe~AreNa~~~----g-~rV~fi~gDl~e~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dG 356 (423)
T PRK14966 283 ISPPALETARKNAADL----G-ARVEFAHGSWFDTDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDG 356 (423)
T ss_pred CCHHHHHHHHHHHHHc----C-CcEEEEEcchhccccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCch
Confidence 9999999999998654 2 3799999997654211 135799999987631100 0001
Q ss_pred --chHHHHHHHHHhcCCCcEEEEec
Q 020933 219 --FEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 219 --~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+.+.+++.+.+.|+|||.+++..
T Consensus 357 L~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 357 LSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 12356666778999999998754
No 24
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.47 E-value=2.5e-12 Score=123.39 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=97.3
Q ss_pred HHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHH
Q 020933 115 MITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK 194 (319)
Q Consensus 115 ~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~ 194 (319)
++.+++.. ...+|||||||+|.++..+++..|..+|++||+|+.+++.+++++..+... ...+++++.+|+...+
T Consensus 220 lL~~lp~~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~- 294 (378)
T PRK15001 220 FMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGV- 294 (378)
T ss_pred HHHhCCcc---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccC-
Confidence 45565432 236999999999999999998877789999999999999999987654110 1247899999986653
Q ss_pred hCCCCCccEEEEcCCCCCCCc-cccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcC
Q 020933 195 AVPEGTYDAVIVDSSDPIGPA-QELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFK 263 (319)
Q Consensus 195 ~~~~~~fDvIi~D~~~~~~~~-~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~ 263 (319)
++.+||+|+++++.+.+.. ..-...++|+.++++|+|||.+.+.... +.. +...+++.|.
T Consensus 295 --~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr---~l~----y~~~L~~~fg 355 (378)
T PRK15001 295 --EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR---HLD----YFHKLKKIFG 355 (378)
T ss_pred --CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec---CcC----HHHHHHHHcC
Confidence 2468999999877544321 1112357899999999999998886422 222 3355666783
No 25
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.46 E-value=4.8e-13 Score=107.60 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=83.3
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
...+|||||||+|..+..+++..+..+|+++|+++.+++.+++++... ..++++++.+|+...+... .++||+|+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~D~v~ 93 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF----GVSNIVIVEGDAPEALEDS-LPEPDRVF 93 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh----CCCceEEEeccccccChhh-cCCCCEEE
Confidence 456999999999999999998766689999999999999999887654 2347899999976544322 46899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++.... . ..++++.+.+.|+|||.++++.
T Consensus 94 ~~~~~~--~-----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGSGG--L-----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCcch--h-----HHHHHHHHHHHcCCCCEEEEEe
Confidence 864321 1 2478999999999999999864
No 26
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.45 E-value=2.8e-13 Score=114.02 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=84.0
Q ss_pred CCceeeEeeccccHHHHHHH-hcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGDGGVLREVS-RHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
+..+|||||||+|.++..++ +..+..++++||+++++++.|++.+... .-++++++++|..+ +...-.++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~----~~~ni~~~~~d~~~-l~~~~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL----GLDNIEFIQGDIED-LPQELEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT----TSTTEEEEESBTTC-GCGCSSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc----cccccceEEeehhc-cccccCCCeeEE
Confidence 46799999999999999999 5566789999999999999999987654 23489999999988 432102789999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+++....... ....+++.+.+.|+++|++++..
T Consensus 78 ~~~~~l~~~~----~~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 78 ISNGVLHHFP----DPEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp EEESTGGGTS----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcCchhhcc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 9875432111 12468999999999999998864
No 27
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.7e-12 Score=119.42 Aligned_cols=152 Identities=21% Similarity=0.322 Sum_probs=106.2
Q ss_pred EEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhcccccc
Q 020933 95 VLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA 174 (319)
Q Consensus 95 ~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~ 174 (319)
...+-|++...+-| .--+-++.+++.. ...+|||+|||.|.++..+++..|..++++||+|...++.||+++..+
T Consensus 131 ~~t~pGVFS~~~lD-~GS~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N- 205 (300)
T COG2813 131 FKTLPGVFSRDKLD-KGSRLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN- 205 (300)
T ss_pred EEeCCCCCcCCCcC-hHHHHHHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc-
Confidence 33444555544444 2223345555432 234999999999999999999988999999999999999999998765
Q ss_pred CCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCcc-ccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHH
Q 020933 175 VGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQ-ELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIED 253 (319)
Q Consensus 175 ~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~-~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 253 (319)
+. .+..++..|..+-+ .++||+||++++.+.+... +-..+++++..+++|++||-|.+.... + ..
T Consensus 206 -~~--~~~~v~~s~~~~~v----~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~---~----l~ 271 (300)
T COG2813 206 -GV--ENTEVWASNLYEPV----EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR---H----LP 271 (300)
T ss_pred -CC--CccEEEEecccccc----cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC---C----CC
Confidence 22 23377888865544 3599999998877655422 122358999999999999987765532 1 22
Q ss_pred HHHHHHhhcCCce
Q 020933 254 IVANCRQIFKGSV 266 (319)
Q Consensus 254 ~~~~l~~~F~~~v 266 (319)
+...+++.| +.+
T Consensus 272 y~~~L~~~F-g~v 283 (300)
T COG2813 272 YEKKLKELF-GNV 283 (300)
T ss_pred hHHHHHHhc-CCE
Confidence 345577788 444
No 28
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.44 E-value=7.1e-13 Score=117.61 Aligned_cols=106 Identities=23% Similarity=0.440 Sum_probs=91.3
Q ss_pred CCCceeeEeeccccHHHHHHHhcCC-CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE-cChHHHHHhCCCCCcc
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~-~D~~~~l~~~~~~~fD 202 (319)
.++++||+||++.|..+.+++...+ ..+++.||+|++..+.|+++|.+. +.. +++.++. +|+.+.+.....++||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a--g~~-~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA--GVD-DRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc--CCc-ceEEEEecCcHHHHHHhccCCCcc
Confidence 4789999999999999999998655 679999999999999999999876 444 4699999 6999998753368999
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+|++|.....+ ++||+.+.++|+|||++++.
T Consensus 135 liFIDadK~~y-------p~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 135 LVFIDADKADY-------PEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEEEeCChhhC-------HHHHHHHHHHhCCCcEEEEe
Confidence 99999876544 48999999999999999874
No 29
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.44 E-value=8e-13 Score=115.39 Aligned_cols=102 Identities=20% Similarity=0.273 Sum_probs=84.0
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
+.+.+|||||||+|..+..+++..+..+|+++|+++.+++.++++.... ++ .+++++++|+.++.. .++||+|
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~--~l--~~i~~~~~d~~~~~~---~~~fDlV 116 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL--GL--KNVTVVHGRAEEFGQ---EEKFDVV 116 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc--CC--CCEEEEeccHhhCCC---CCCccEE
Confidence 3478999999999999999987666789999999999999999987765 22 359999999877532 5689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+++... . ...+++.+++.|+|||++++..
T Consensus 117 ~~~~~~---~-----~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 117 TSRAVA---S-----LSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEcccc---C-----HHHHHHHHHHhcCCCeEEEEEe
Confidence 986532 1 3579999999999999999864
No 30
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.44 E-value=1.1e-12 Score=121.79 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=107.5
Q ss_pred CCCccEEEEEecCCeeEEEEcCeEeecccchhH-HHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEE
Q 020933 79 SDYQNVMVFQSSTYGKVLILDGVIQLTERDECA-YQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICE 157 (319)
Q Consensus 79 s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~-Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VE 157 (319)
.|.|+| +.+...+|.-+.++....+..++... ....+... .....+.+|||+|||+|.++..++++.+..+|+++|
T Consensus 76 ~Pl~yi-~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~--~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avD 152 (284)
T TIGR03533 76 IPVAYL-TNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPW--LEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVD 152 (284)
T ss_pred CcHHHH-cCCCeecCcEEEECCCCccCCCchHHHHHHHHHHH--hccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEE
Confidence 478888 44455567778887655555443211 12222211 112245799999999999999999876667999999
Q ss_pred CChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCC------c-------cc-------
Q 020933 158 IDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGP------A-------QE------- 217 (319)
Q Consensus 158 id~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~------~-------~~------- 217 (319)
+|+.+++.|++++... ++. .+++++.+|+.+.+ ++++||+|++|++..... . ..
T Consensus 153 is~~al~~A~~n~~~~--~~~-~~i~~~~~D~~~~~---~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dG 226 (284)
T TIGR03533 153 ISPDALAVAEINIERH--GLE-DRVTLIQSDLFAAL---PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDG 226 (284)
T ss_pred CCHHHHHHHHHHHHHc--CCC-CcEEEEECchhhcc---CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcH
Confidence 9999999999998654 222 47999999987654 245899999986532110 0 00
Q ss_pred -cchHHHHHHHHHhcCCCcEEEEecC
Q 020933 218 -LFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 218 -l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
-+...+++.+.++|+|||.+++..+
T Consensus 227 l~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 227 LDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1125678888999999999998764
No 31
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.43 E-value=1.6e-12 Score=124.38 Aligned_cols=127 Identities=16% Similarity=0.204 Sum_probs=101.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
....+||||||+|..+..+++..|...++++|+++.+++.+.+..... + -.++.++.+|+..++...+++++|.|+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~--g--L~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL--N--LKNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--C--CCcEEEEECCHHHhhhhCCCCceeEEE
Confidence 456899999999999999999777889999999999999998877554 2 357999999998876555678999999
Q ss_pred EcCCCCCCCc--cccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHh
Q 020933 206 VDSSDPIGPA--QELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (319)
Q Consensus 206 ~D~~~~~~~~--~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 260 (319)
+..++|+... .++....|++.++++|+|||.+.+.+.+. ..+....+.+.+
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~----~y~~~~~e~~~~ 250 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE----LYFEFSLELFLK 250 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH----HHHHHHHHHHHh
Confidence 9988887432 34667899999999999999999976543 344444444443
No 32
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.43 E-value=2.4e-12 Score=117.53 Aligned_cols=168 Identities=16% Similarity=0.150 Sum_probs=107.9
Q ss_pred eCCCccEEEEEecCCeeEEEEcCeEeecccchh-HHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEE
Q 020933 78 KSDYQNVMVFQSSTYGKVLILDGVIQLTERDEC-AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDIC 156 (319)
Q Consensus 78 ~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~-~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~V 156 (319)
..|.|+| +-.....|..+.++...-+..++.. .+...+..+. ....+.+|||+|||+|.++..+++..+..+|+++
T Consensus 40 ~~Pl~yi-~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~--~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~v 116 (251)
T TIGR03704 40 GLPLEHV-LGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALAR--PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAA 116 (251)
T ss_pred CCCHHHh-cccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhc--ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEE
Confidence 4577888 4444455666666544333333322 2222222211 1223458999999999999999887666789999
Q ss_pred ECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCC-CC-----Cc--------ccc----
Q 020933 157 EIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDP-IG-----PA--------QEL---- 218 (319)
Q Consensus 157 Eid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~-~~-----~~--------~~l---- 218 (319)
|+|+.+++.+++++... +++++++|..+++.....++||+|++|++.. .. ++ ..+
T Consensus 117 Dis~~al~~A~~N~~~~-------~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~ 189 (251)
T TIGR03704 117 DIDPAAVRCARRNLADA-------GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGA 189 (251)
T ss_pred ECCHHHHHHHHHHHHHc-------CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCC
Confidence 99999999999997643 2578999988765421135799999988642 10 00 001
Q ss_pred ----chHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHh
Q 020933 219 ----FEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (319)
Q Consensus 219 ----~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 260 (319)
....+++.+.++|+|||.+++.... .....+.+.+++
T Consensus 190 dgl~~~~~i~~~a~~~L~~gG~l~l~~~~-----~~~~~v~~~l~~ 230 (251)
T TIGR03704 190 DGLDVLRRVAAGAPDWLAPGGHLLVETSE-----RQAPLAVEAFAR 230 (251)
T ss_pred cHHHHHHHHHHHHHHhcCCCCEEEEEECc-----chHHHHHHHHHH
Confidence 1246778888999999999986432 233445555543
No 33
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.43 E-value=3.4e-13 Score=119.27 Aligned_cols=106 Identities=29% Similarity=0.474 Sum_probs=87.6
Q ss_pred CCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC----CCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV----PEG 199 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~----~~~ 199 (319)
.++++||+||+++|..+.++++. ++..+|+.+|+|++..+.|+++|... ++. .+++++.+|+.+++... +.+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a--g~~-~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA--GLD-DRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT--TGG-GGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc--CCC-CcEEEEEeccHhhHHHHHhccCCC
Confidence 37899999999999999999975 44689999999999999999999875 443 59999999999987653 135
Q ss_pred CccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 200 ~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+||+|++|..... ..++|+.+.++|+|||++++.
T Consensus 121 ~fD~VFiDa~K~~-------y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 121 QFDFVFIDADKRN-------YLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp SEEEEEEESTGGG-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeEEEEcccccc-------hhhHHHHHhhhccCCeEEEEc
Confidence 8999999985422 357899999999999999986
No 34
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.43 E-value=2.3e-12 Score=124.75 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=97.3
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC--CCCCccE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~--~~~~fDv 203 (319)
++++|||+|||+|+++..++.. +..+|++||+|+.+++.+++++..+ +++..+++++++|+.+++... ..++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~N--gl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELN--KLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc--CCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 5689999999999998876654 4569999999999999999998765 343348999999999998643 2468999
Q ss_pred EEEcCCCCCCCccccc-----hHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHH
Q 020933 204 VIVDSSDPIGPAQELF-----EKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVAN 257 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~-----~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~ 257 (319)
||+|++.-......+. ..++++.+.++|+|||++++-+++.....+.+.+++..
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 9999875222111111 23566678899999999998877766666655555543
No 35
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.42 E-value=5.1e-13 Score=101.99 Aligned_cols=95 Identities=18% Similarity=0.332 Sum_probs=74.6
Q ss_pred eEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCC
Q 020933 131 LVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSD 210 (319)
Q Consensus 131 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~ 210 (319)
||||||+|..+..++++ +..+|+++|+++.+++.+++.... .++.++.+|..++. .++++||+|++...-
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~-------~~~~~~~~d~~~l~--~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN-------EGVSFRQGDAEDLP--FPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT-------STEEEEESBTTSSS--S-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc-------cCchheeehHHhCc--cccccccccccccce
Confidence 89999999999999999 568999999999999999998753 36779999988762 347899999975443
Q ss_pred CCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 211 PIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 211 ~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
.... ....+++++.|+|||||++++
T Consensus 71 ~~~~----~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLE----DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSS----HHHHHHHHHHHHEEEEEEEEE
T ss_pred eecc----CHHHHHHHHHHHcCcCeEEeC
Confidence 2221 145799999999999999985
No 36
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.42 E-value=2.1e-12 Score=112.49 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=82.0
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.++.+|||||||+|.++..+++..+..+|+++|+++.+++.+++++... + -.+++++.+|+...+ .++||+|
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~--~--~~~i~~~~~d~~~~~----~~~~D~v 101 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF--G--CGNIDIIPGEAPIEL----PGKADAI 101 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh--C--CCCeEEEecCchhhc----CcCCCEE
Confidence 4667999999999999999998766689999999999999999987654 2 246999999975322 4679999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+++.... ...++++.+.+.|+|||.++++.
T Consensus 102 ~~~~~~~-------~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 102 FIGGSGG-------NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EECCCcc-------CHHHHHHHHHHhcCCCeEEEEEE
Confidence 9864321 13568999999999999998853
No 37
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=2.1e-12 Score=117.54 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=82.8
Q ss_pred CCCceeeEeeccccHHHHHHHh--cCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 125 PNPKKVLVIGGGDGGVLREVSR--HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~--~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
++..+|||||||+|..+..+++ ..+..++++||+++.+++.|++++... +. ..+++++++|+.+.. ...+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~--~~-~~~v~~~~~d~~~~~----~~~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY--KA-PTPVDVIEGDIRDIA----IENAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CC-CCCeEEEeCChhhCC----CCCCC
Confidence 4567999999999999988887 345679999999999999999988653 11 248999999976642 34699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|++...-+..+.. ....+++.++++|||||.|++..
T Consensus 128 ~vv~~~~l~~l~~~--~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 128 MVVLNFTLQFLEPS--ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EEehhhHHHhCCHH--HHHHHHHHHHHhcCCCCEEEEEE
Confidence 99975433222211 13578999999999999998864
No 38
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.41 E-value=1.5e-12 Score=117.69 Aligned_cols=106 Identities=25% Similarity=0.391 Sum_probs=87.7
Q ss_pred CCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC----CCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV----PEG 199 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~----~~~ 199 (319)
.++++|||||||+|..+.++++. ++..+|+++|+|++.++.|++++... ++. .+++++.+|+.+.+... +.+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--gl~-~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--GVD-HKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCC-CcEEEEEccHHHHHHHHHhCCCCC
Confidence 36789999999999999988875 44679999999999999999999876 444 58999999999987642 136
Q ss_pred CccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 200 ~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+||+|++|...+. ..++++.+.+.|+|||++++.
T Consensus 144 ~fD~VfiDa~k~~-------y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 144 EFDFAFVDADKPN-------YVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCEEEECCCHHH-------HHHHHHHHHHhcCCCeEEEEE
Confidence 8999999976432 247899999999999998863
No 39
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.41 E-value=1.7e-12 Score=129.57 Aligned_cols=157 Identities=11% Similarity=0.136 Sum_probs=111.0
Q ss_pred eCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHH-HHhccc-------------------c--CCCCCceeeEeec
Q 020933 78 KSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEM-ITHLPL-------------------C--SIPNPKKVLVIGG 135 (319)
Q Consensus 78 ~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~-l~~l~l-------------------~--~~~~~~~VL~IG~ 135 (319)
..|.|+| +.+..++|.-+.+|-.+.+..+++-.--+. +..+.- . ...++.+||||||
T Consensus 69 ~ePlqYI-~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~ 147 (506)
T PRK01544 69 HEPIAYI-TGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGT 147 (506)
T ss_pred CCCHHHH-hCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccC
Confidence 4588999 666778899999999999888774322221 111110 0 0113468999999
Q ss_pred cccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCC--
Q 020933 136 GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIG-- 213 (319)
Q Consensus 136 G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~-- 213 (319)
|+|.++..+++..+..+|+++|+|+.+++.|++++... ++. .+++++.+|..+.+ +.++||+|+++++....
T Consensus 148 GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~--~l~-~~v~~~~~D~~~~~---~~~~fDlIvsNPPYi~~~~ 221 (506)
T PRK01544 148 GSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY--EVT-DRIQIIHSNWFENI---EKQKFDFIVSNPPYISHSE 221 (506)
T ss_pred chhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc--CCc-cceeeeecchhhhC---cCCCccEEEECCCCCCchh
Confidence 99999999987666679999999999999999987654 222 48999999976654 24689999998753210
Q ss_pred ------------Ccccc--------chHHHHHHHHHhcCCCcEEEEec
Q 020933 214 ------------PAQEL--------FEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 214 ------------~~~~l--------~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|...+ +...+++.+.++|+|||.+++..
T Consensus 222 ~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 222 KSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred hhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 00011 12346677789999999999864
No 40
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.40 E-value=1.8e-12 Score=113.01 Aligned_cols=114 Identities=20% Similarity=0.333 Sum_probs=96.5
Q ss_pred HHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH
Q 020933 113 QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF 192 (319)
Q Consensus 113 ~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~ 192 (319)
.+.++++++. .+.+|.|||||.|..+..++++.|...|+++|-|++|++.|++.+ ++++|..+|.+.|
T Consensus 20 ~dLla~Vp~~---~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~w 87 (257)
T COG4106 20 RDLLARVPLE---RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRTW 87 (257)
T ss_pred HHHHhhCCcc---ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhhc
Confidence 5677887766 678999999999999999999999999999999999999998876 4789999999988
Q ss_pred HHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcc
Q 020933 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIW 245 (319)
Q Consensus 193 l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~ 245 (319)
- ++...|+|+.+....+-+. ..+.|..+...|.|||+|.+|...-+
T Consensus 88 ~---p~~~~dllfaNAvlqWlpd----H~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 88 K---PEQPTDLLFANAVLQWLPD----HPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred C---CCCccchhhhhhhhhhccc----cHHHHHHHHHhhCCCceEEEECCCcc
Confidence 3 4678999998877665542 23678999999999999999985533
No 41
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.40 E-value=2.7e-12 Score=120.43 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=107.3
Q ss_pred CCCccEEEEEecCCeeEEEEcCeEeecccchhH-HHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEE
Q 020933 79 SDYQNVMVFQSSTYGKVLILDGVIQLTERDECA-YQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICE 157 (319)
Q Consensus 79 s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~-Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VE 157 (319)
.|.|+| +-+...+|.-+.++..+.+..++... ....+... .....+.+|||+|||+|.++..+++..+..+|+++|
T Consensus 88 ~Pl~yi-~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~--~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avD 164 (307)
T PRK11805 88 IPAAYL-TNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPW--LEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVD 164 (307)
T ss_pred ccHHHH-cCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHH--hccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEe
Confidence 588888 45555677778887655555443211 11222211 111123689999999999999999877778999999
Q ss_pred CChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCC-------------Cccc-------
Q 020933 158 IDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIG-------------PAQE------- 217 (319)
Q Consensus 158 id~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~-------------~~~~------- 217 (319)
+|+.+++.|++++... ++. .+++++++|..+.+ +.++||+|++|++.... +...
T Consensus 165 is~~al~~A~~n~~~~--~l~-~~i~~~~~D~~~~l---~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dG 238 (307)
T PRK11805 165 ISPDALAVAEINIERH--GLE-DRVTLIESDLFAAL---PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDG 238 (307)
T ss_pred CCHHHHHHHHHHHHHh--CCC-CcEEEEECchhhhC---CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCch
Confidence 9999999999998754 222 47999999987654 24689999998653110 0000
Q ss_pred -cchHHHHHHHHHhcCCCcEEEEecC
Q 020933 218 -LFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 218 -l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
-+...+++.+.++|+|||.+++..+
T Consensus 239 l~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 239 LDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1135678888999999999998754
No 42
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.40 E-value=2.9e-12 Score=116.97 Aligned_cols=102 Identities=20% Similarity=0.321 Sum_probs=83.5
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..+.+|||||||+|.++..+++..+..+|++||+++.+++.+++++ ++++++.+|+..+. +.++||+|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~---~~~~fD~v 97 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ---PPQALDLI 97 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC---CCCCccEE
Confidence 4568999999999999999988766689999999999999999874 35789999987663 25689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
+++...++... ...+++.+.++|||||.++++..
T Consensus 98 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 98 FANASLQWLPD----HLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EEccChhhCCC----HHHHHHHHHHhcCCCcEEEEECC
Confidence 98765443321 35789999999999999998753
No 43
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.39 E-value=6.1e-12 Score=110.68 Aligned_cols=122 Identities=16% Similarity=0.279 Sum_probs=93.0
Q ss_pred CCCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
.....+|||+|||+|.++.++++. .+..+|+++|+++.+++.+++++... +. ..+++++.+|+.+++... .++||
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~--g~-~~~v~~~~~d~~~~l~~~-~~~~D 113 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF--GV-LNNIVLIKGEAPEILFTI-NEKFD 113 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh--CC-CCCeEEEEechhhhHhhc-CCCCC
Confidence 345679999999999999998875 34568999999999999999987654 21 257999999998877543 46899
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHh
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 260 (319)
+|+++.... ...++++.+.++|+|||.+++... ..+.+......+++
T Consensus 114 ~V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~----~~~~~~~~~~~l~~ 160 (198)
T PRK00377 114 RIFIGGGSE-------KLKEIISASWEIIKKGGRIVIDAI----LLETVNNALSALEN 160 (198)
T ss_pred EEEECCCcc-------cHHHHHHHHHHHcCCCcEEEEEee----cHHHHHHHHHHHHH
Confidence 999854211 135789999999999999997532 34455666666654
No 44
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.39 E-value=3.2e-12 Score=118.71 Aligned_cols=155 Identities=13% Similarity=0.153 Sum_probs=106.6
Q ss_pred CCCccEEEEEecCCeeEEEEcCeEeecccchhHHHH-HHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEE
Q 020933 79 SDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQE-MITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICE 157 (319)
Q Consensus 79 s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e-~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VE 157 (319)
.|.|+| +-+...+|.-+.++....+..++....-+ .+..+ .......+|||+|||+|.++..+++..+..+|+++|
T Consensus 69 ~pl~yi-~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~--~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avD 145 (284)
T TIGR00536 69 VPVAYL-LGSKEFYGLEFFVNEHVLIPRPETEELVEKALASL--ISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVD 145 (284)
T ss_pred CCHHHH-hCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHh--hhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEE
Confidence 577887 44455678778887666655554332222 22221 111222699999999999999999877667999999
Q ss_pred CChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCC-------------cccc------
Q 020933 158 IDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGP-------------AQEL------ 218 (319)
Q Consensus 158 id~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~-------------~~~l------ 218 (319)
+++.+++.|+++.... ++ ..+++++.+|..+.+ +..+||+|++|++..... ...+
T Consensus 146 is~~al~~a~~n~~~~--~~-~~~v~~~~~d~~~~~---~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dg 219 (284)
T TIGR00536 146 ISPDALAVAEENAEKN--QL-EHRVEFIQSNLFEPL---AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDG 219 (284)
T ss_pred CCHHHHHHHHHHHHHc--CC-CCcEEEEECchhccC---cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcH
Confidence 9999999999987654 22 236999999977643 234899999986532110 0001
Q ss_pred --chHHHHHHHHHhcCCCcEEEEecC
Q 020933 219 --FEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 219 --~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
+...+++.+.+.|+|||++++..+
T Consensus 220 l~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 220 LNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 234678888899999999998764
No 45
>PLN02476 O-methyltransferase
Probab=99.39 E-value=3.8e-12 Score=117.12 Aligned_cols=106 Identities=22% Similarity=0.363 Sum_probs=89.1
Q ss_pred CCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC----CCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV----PEG 199 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~----~~~ 199 (319)
.++++|||||+|+|..+.++++. ++..+|+.+|+|++..+.|++++... ++. .+++++.+|+.+.+... ..+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a--Gl~-~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA--GVS-HKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCC-CcEEEEEcCHHHHHHHHHhcccCC
Confidence 46899999999999999999874 34568999999999999999999876 444 58999999999988653 135
Q ss_pred CccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 200 ~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+||+|++|..... ..++|+.+.++|+|||++++.
T Consensus 194 ~FD~VFIDa~K~~-------Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 194 SYDFAFVDADKRM-------YQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCEEEECCCHHH-------HHHHHHHHHHhcCCCcEEEEe
Confidence 8999999986432 357899999999999999875
No 46
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.38 E-value=9.2e-12 Score=107.05 Aligned_cols=120 Identities=16% Similarity=0.240 Sum_probs=98.0
Q ss_pred CCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
..+..+++|||||+|+++.+++...+..+|+++|-|++.++..+++...+ .-++++++.+|+.+.+... .+||.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f----g~~n~~vv~g~Ap~~L~~~--~~~da 105 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF----GVDNLEVVEGDAPEALPDL--PSPDA 105 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh----CCCcEEEEeccchHhhcCC--CCCCE
Confidence 34567999999999999999998778899999999999999999998876 3579999999999999754 38999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhh
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQI 261 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 261 (319)
|++.-... ..+.++.+...|||||.+|+|+-. .+.....++.+++.
T Consensus 106 iFIGGg~~--------i~~ile~~~~~l~~ggrlV~nait----lE~~~~a~~~~~~~ 151 (187)
T COG2242 106 IFIGGGGN--------IEEILEAAWERLKPGGRLVANAIT----LETLAKALEALEQL 151 (187)
T ss_pred EEECCCCC--------HHHHHHHHHHHcCcCCeEEEEeec----HHHHHHHHHHHHHc
Confidence 99875522 357899999999999999998633 34445555555543
No 47
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.38 E-value=1.9e-12 Score=118.26 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=80.6
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..+.+|||||||+|.+++.+++..+..+|+++|+++.+++.+++. +++++++|+.++. ++++||+|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~---~~~~fD~v 93 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK---PKPDTDVV 93 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC---CCCCceEE
Confidence 456899999999999999998876667899999999999999752 4778999987653 25789999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++...-++.+. ...+++.++++|||||.++++.
T Consensus 94 ~~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 94 VSNAALQWVPE----HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEehhhhhCCC----HHHHHHHHHHhCCCCcEEEEEc
Confidence 98665433321 3578999999999999999875
No 48
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=3.8e-12 Score=116.28 Aligned_cols=107 Identities=20% Similarity=0.351 Sum_probs=83.6
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
+.+.+|||||||+|..+..+++.. .+|+++|+++++++.|+++.... +. .++++++++|+.+..... +++||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~--g~-~~~v~~~~~d~~~l~~~~-~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAK--GV-SDNMQFIHCAAQDIAQHL-ETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc--CC-ccceEEEEcCHHHHhhhc-CCCCCEE
Confidence 356799999999999999999874 68999999999999999987653 22 358999999988764332 6789999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++...-..... ...+++.+.++|||||++++..
T Consensus 117 ~~~~vl~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 117 LFHAVLEWVAD----PKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred EehhHHHhhCC----HHHHHHHHHHHcCCCeEEEEEE
Confidence 97543221111 2468999999999999998753
No 49
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.37 E-value=5.8e-12 Score=120.85 Aligned_cols=129 Identities=19% Similarity=0.291 Sum_probs=104.0
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC--CCCCccE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~--~~~~fDv 203 (319)
++++||++-|=||+++..++.. +..+||.||+|...++.|++++..+ +++..++.++++|+++|++.. .+.+||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LN--g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELN--GLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhc--CCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 4889999999999999999877 4569999999999999999999877 666778999999999999875 2359999
Q ss_pred EEEcCCCCCCCccccc-----hHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHH
Q 020933 204 VIVDSSDPIGPAQELF-----EKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVAN 257 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~-----~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~ 257 (319)
||+|++.-.......+ ..+.+..+.++|+|||++++.+++...+.+.+.+++..
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~ 352 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIAR 352 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHH
Confidence 9999886433222221 23567778899999999999988877777766665544
No 50
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.37 E-value=1.6e-11 Score=111.14 Aligned_cols=109 Identities=19% Similarity=0.339 Sum_probs=84.4
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
++.+|||+|||+|.++..+++..+..+++++|+++.+++.+++++... ...+++++++|+.+.+ +.++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~---~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL----GLDNVTFLQSDWFEPL---PGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc----CCCeEEEEECchhccC---cCCceeEEE
Confidence 456999999999999999998766679999999999999999987654 2247999999987643 257899999
Q ss_pred EcCCCCCCC-----ccc-----------------cchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGP-----AQE-----------------LFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~-----~~~-----------------l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|++..... ... .....+++.+.++|+|||.+++..
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 876532110 000 011367889999999999999864
No 51
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=3.9e-12 Score=116.63 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=88.1
Q ss_pred CCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 123 SIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 123 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
...++.+|||||||.|++++.++++. ..+|++|++|++..+.+++.+... +++ .+++++..|-+++ .++||
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~--gl~-~~v~v~l~d~rd~-----~e~fD 139 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR--GLE-DNVEVRLQDYRDF-----EEPFD 139 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc--CCC-cccEEEecccccc-----ccccc
Confidence 34578899999999999999999987 478999999999999999988765 444 4899999997665 45699
Q ss_pred EEEE-cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~-D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
.|++ ..+.+.+... ...||+.+.+.|+|||.+++++
T Consensus 140 rIvSvgmfEhvg~~~---~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 140 RIVSVGMFEHVGKEN---YDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred eeeehhhHHHhCccc---HHHHHHHHHhhcCCCceEEEEE
Confidence 9996 4455444322 4689999999999999999986
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.37 E-value=1.4e-12 Score=102.06 Aligned_cols=97 Identities=25% Similarity=0.435 Sum_probs=72.6
Q ss_pred eeEeeccccHHHHHHHhcC---CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEE
Q 020933 130 VLVIGGGDGGVLREVSRHS---SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (319)
Q Consensus 130 VL~IG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~ 206 (319)
|||||||+|..++.+++.. +..++++||+|+++++.+++++... ..+++++++|+.++... +++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~l~~~--~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARDLPFS--DGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTCHHHH--SSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhHCccc--CCCeeEEEE
Confidence 7999999999999998764 3378999999999999999998653 34899999999886542 579999998
Q ss_pred -cCCCCCCCccccchHHHHHHHHHhcCCCc
Q 020933 207 -DSSDPIGPAQELFEKPFFESVAKALRPGG 235 (319)
Q Consensus 207 -D~~~~~~~~~~l~~~~f~~~~~~~LkpgG 235 (319)
..+-....+.. ...+++.+.++|+|||
T Consensus 74 ~~~~~~~~~~~~--~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEE--LEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHH--HHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHH--HHHHHHHHHHHhCCCC
Confidence 33121111111 3578999999999998
No 53
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.36 E-value=5.5e-12 Score=112.22 Aligned_cols=104 Identities=17% Similarity=0.278 Sum_probs=81.9
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+|||+|||.|.++..+++.. .+|+++|++++.|++|+.+..+. .-.+++......+.... .++||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~-----gv~i~y~~~~~edl~~~--~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALES-----GVNIDYRQATVEDLASA--GGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhc-----cccccchhhhHHHHHhc--CCCccEEE
Confidence 56799999999999999999985 79999999999999999987653 22466777777766542 48999999
Q ss_pred Ec-CCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 206 VD-SSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 206 ~D-~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+. .-.+... -..|++.|.+++||||++++.+.+
T Consensus 130 cmEVlEHv~d-----p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 130 CMEVLEHVPD-----PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred EhhHHHccCC-----HHHHHHHHHHHcCCCcEEEEeccc
Confidence 72 2222211 246999999999999999998755
No 54
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.36 E-value=1.3e-11 Score=110.85 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=83.6
Q ss_pred CCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
+.+.+|||||||+|..+..+++. ++..+|+++|+++.+++.+++++... ..++++++.+|+.++. .++++||+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~v~~~~~d~~~~~--~~~~~fD~ 117 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA----GLHNVELVHGNAMELP--FDDNSFDY 117 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc----CCCceEEEEechhcCC--CCCCCccE
Confidence 35679999999999999999876 35579999999999999999887643 2357999999987653 23578999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|++...-...+. ..++++.+.++|+|||.+++..
T Consensus 118 V~~~~~l~~~~~----~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 118 VTIGFGLRNVPD----YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred EEEecccccCCC----HHHHHHHHHHHcCcCeEEEEEE
Confidence 997643322211 3478999999999999998754
No 55
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.36 E-value=5.3e-12 Score=111.11 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=78.8
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++..... + ..+++++++|..++. . +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~~--~--~~~v~~~~~d~~~~~--~-~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAAE--N--LDNLHTAVVDLNNLT--F-DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHc--C--CCcceEEecChhhCC--c-CCCcCEEE
Confidence 46799999999999999999873 58999999999999999876543 2 246889999976542 2 46799999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
+...-...+.. ....+++.+.++|+|||.+++
T Consensus 101 ~~~~~~~~~~~--~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFLEAK--TIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhCCHH--HHHHHHHHHHHHcCCCcEEEE
Confidence 75443222211 135799999999999998544
No 56
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.36 E-value=1.8e-11 Score=107.45 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=83.4
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
....+|||+|||+|.++.++++..+..+|+++|+|+++++.+++++... + ..+++++.+|+.+.+... ...+|.|
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~--~--~~~v~~~~~d~~~~~~~~-~~~~d~v 113 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF--G--VKNVEVIEGSAPECLAQL-APAPDRV 113 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--C--CCCeEEEECchHHHHhhC-CCCCCEE
Confidence 3567999999999999999987655679999999999999999988654 2 247999999987755433 3457888
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
+++... ....+++.+.++|+|||.+++...
T Consensus 114 ~~~~~~--------~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 114 CIEGGR--------PIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEECCc--------CHHHHHHHHHHhcCCCeEEEEEee
Confidence 876421 135789999999999999998754
No 57
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.36 E-value=3e-12 Score=118.12 Aligned_cols=107 Identities=21% Similarity=0.388 Sum_probs=78.3
Q ss_pred CCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 123 SIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 123 ~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
...++.+|||||||.|+++..+++..+ .+|++|.+|++..+.+++.+... ++. .++++..+|.+++ +.+||
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~--gl~-~~v~v~~~D~~~~-----~~~fD 129 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREA--GLE-DRVEVRLQDYRDL-----PGKFD 129 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS--TSS-STEEEEES-GGG--------S-S
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhc--CCC-CceEEEEeecccc-----CCCCC
Confidence 345678999999999999999999863 68999999999999999988765 444 4899999997664 35999
Q ss_pred EEEE-cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~-D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
.|++ ....+.+. -....||+.+.+.|||||.++++.
T Consensus 130 ~IvSi~~~Ehvg~---~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 130 RIVSIEMFEHVGR---KNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEEEESEGGGTCG---GGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEEEEechhhcCh---hHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9985 33433332 124689999999999999999885
No 58
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.36 E-value=5.2e-12 Score=120.11 Aligned_cols=108 Identities=18% Similarity=0.283 Sum_probs=84.7
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~ 206 (319)
..+|||||||+|.++..+++..+..+|+++|+|+.+++.+++++... + -..+++.+|+...+ .++||+|++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n--~---l~~~~~~~D~~~~~----~~~fDlIvs 267 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN--G---LEGEVFASNVFSDI----KGRFDMIIS 267 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--C---CCCEEEEccccccc----CCCccEEEE
Confidence 45899999999999999998877778999999999999999988764 2 24577888876542 578999999
Q ss_pred cCCCCCCCcc-ccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 207 DSSDPIGPAQ-ELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 207 D~~~~~~~~~-~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+++.+.+... .-....+++.+.++|||||.+++..+.
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 8765443221 112468999999999999999876543
No 59
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.35 E-value=5.4e-12 Score=115.82 Aligned_cols=110 Identities=16% Similarity=0.091 Sum_probs=82.4
Q ss_pred CCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
+++.+|||||||+|.++..+++. .+..+|+++|++++|++.|++........ ..++++++++|+.+.. .++++||+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~lp--~~~~sfD~ 148 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDLP--FDDCYFDA 148 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccCC--CCCCCEeE
Confidence 45679999999999999988876 34568999999999999998765421001 1358999999987652 23678999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|++...-...+ ....+++++.++|||||.+++..
T Consensus 149 V~~~~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 149 ITMGYGLRNVV----DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEEecccccCC----CHHHHHHHHHHHcCcCcEEEEEE
Confidence 99754332221 13578999999999999987753
No 60
>PRK04266 fibrillarin; Provisional
Probab=99.35 E-value=5.4e-11 Score=106.91 Aligned_cols=126 Identities=15% Similarity=0.132 Sum_probs=87.9
Q ss_pred CCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHH--HhCCCCCc
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFL--KAVPEGTY 201 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l--~~~~~~~f 201 (319)
..+..+|||+|||+|.++..+++..+..+|+++|+++.+++.+.+.... .+++.++.+|+.... ... .++|
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l-~~~~ 142 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHV-VEKV 142 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhc-cccC
Confidence 3456799999999999999999875446899999999999977666442 257899999986421 112 3569
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC---cc--cChHHHHHHHHHHHhh-c
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES---IW--LHMHIIEDIVANCRQI-F 262 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~---~~--~~~~~~~~~~~~l~~~-F 262 (319)
|+|++|..+++. ...+++.+.++|||||.+++.... .| .+...++...+.+++. |
T Consensus 143 D~i~~d~~~p~~------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF 203 (226)
T PRK04266 143 DVIYQDVAQPNQ------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGF 203 (226)
T ss_pred CEEEECCCChhH------HHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCC
Confidence 999988665321 234689999999999999984210 11 1123344555666654 6
No 61
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.35 E-value=7.6e-12 Score=109.97 Aligned_cols=124 Identities=23% Similarity=0.332 Sum_probs=96.6
Q ss_pred eeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCccEEEEc
Q 020933 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDAVIVD 207 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fDvIi~D 207 (319)
-+||||||.|..+..+++..|...+++||+....+..+.+..... .-+|+.++.+|+..++... ++++.|.|.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR----GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh----cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 899999999999999999878899999999999999888776654 3479999999999977654 45899999999
Q ss_pred CCCCCCC----ccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHh
Q 020933 208 SSDPIGP----AQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (319)
Q Consensus 208 ~~~~~~~----~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 260 (319)
.++|+.- ..++.+.+|++.+.++|+|||.+.+.+.. .+++..+++.+.+
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~----~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV----EEYAEWMLEQFEE 148 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-----HHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC----HHHHHHHHHHHHh
Confidence 9999743 45689999999999999999999997754 3455556666555
No 62
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.34 E-value=3.4e-13 Score=105.03 Aligned_cols=99 Identities=16% Similarity=0.269 Sum_probs=61.4
Q ss_pred eEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCC
Q 020933 131 LVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSD 210 (319)
Q Consensus 131 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~ 210 (319)
||||||+|.++..++++.+..+++++|+|+.+++.+++++... ...+......+..+.......++||+|++...-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL----GNDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC----T---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCcceeEEEeecCChhhcccccccceehhhhhH
Confidence 7999999999999998877899999999999999999888764 222334444443333332223599999975433
Q ss_pred CCCCccccchHHHHHHHHHhcCCCcEE
Q 020933 211 PIGPAQELFEKPFFESVAKALRPGGVV 237 (319)
Q Consensus 211 ~~~~~~~l~~~~f~~~~~~~LkpgG~l 237 (319)
+... ...++++.++++|||||+|
T Consensus 77 ~~l~----~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLE----DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-----HHHHHHHHTTT-TSS-EE
T ss_pred hhhh----hHHHHHHHHHHHcCCCCCC
Confidence 2221 1458999999999999986
No 63
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.34 E-value=2e-11 Score=110.44 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=83.1
Q ss_pred CCCceeeEeeccccHHHHHHHhc--CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
++..+|||||||+|..+..++++ .+..+++++|+++.+++.|++++... + ...+++++++|+.++. ...+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~--~-~~~~v~~~~~d~~~~~----~~~~d 124 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--H-SEIPVEILCNDIRHVE----IKNAS 124 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--C-CCCCeEEEECChhhCC----CCCCC
Confidence 35579999999999999999875 25679999999999999999987643 1 1347999999987652 34689
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|++...-+..+... ...+++.++++|+|||.+++..
T Consensus 125 ~v~~~~~l~~~~~~~--~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 125 MVILNFTLQFLPPED--RIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred EEeeecchhhCCHHH--HHHHHHHHHHhcCCCeEEEEee
Confidence 988755433332211 3578999999999999999864
No 64
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.33 E-value=1.8e-11 Score=105.80 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=81.1
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
++++|||+|||+|.++..+++..+ +|+++|+++.+++.+++++... ..+++++.+|..+.. .++||+|+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~----~~~fD~Vi 87 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-----NVGLDVVMTDLFKGV----RGKFDVIL 87 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-----CCceEEEEccccccc----CCcccEEE
Confidence 457899999999999999998753 8999999999999999987643 236889999976643 45899999
Q ss_pred EcCCCCCCCc-----------------cccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGPA-----------------QELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~-----------------~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++.+...... .......+++.+.++|+|||.+++..
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 8865421110 00113568999999999999988754
No 65
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.33 E-value=1.1e-11 Score=110.56 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=84.1
Q ss_pred HHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCC-CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChH
Q 020933 112 YQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV 190 (319)
Q Consensus 112 Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~ 190 (319)
+..++..+. ...+.+|||||||+|..+..+++..+ ..+|++||+++.+++.|++++... + ..+++++.+|+.
T Consensus 66 ~~~~~~~l~---~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~--g--~~~v~~~~~d~~ 138 (215)
T TIGR00080 66 VAMMTELLE---LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL--G--LDNVIVIVGDGT 138 (215)
T ss_pred HHHHHHHhC---CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC--C--CCCeEEEECCcc
Confidence 344444432 34567999999999999999988643 357999999999999999998765 2 357999999987
Q ss_pred HHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 191 AFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 191 ~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+.+.. ..+||+|+++...+ ...+.+.+.|+|||++++..
T Consensus 139 ~~~~~--~~~fD~Ii~~~~~~----------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 139 QGWEP--LAPYDRIYVTAAGP----------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCcc--cCCCCEEEEcCCcc----------cccHHHHHhcCcCcEEEEEE
Confidence 65432 46899999875432 22356778899999999854
No 66
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.32 E-value=1.2e-11 Score=116.63 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=80.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+|||||||+|.++..+++. ..+|++||+++++++.|++++... + ...+++++++|+.++.. .+++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~--~-~~~~i~~~~~dae~l~~--~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMD--P-VTSTIEYLCTTAEKLAD--EGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhc--C-cccceeEEecCHHHhhh--ccCCCCEEE
Confidence 3569999999999999988875 368999999999999999875432 1 12479999999877643 257899999
Q ss_pred EcC-CCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDS-SDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~-~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+.. ..+... ...+++.+.++|||||.+++..
T Consensus 204 ~~~vLeHv~d-----~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 204 SLEVIEHVAN-----PAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred EhhHHHhcCC-----HHHHHHHHHHHcCCCcEEEEEE
Confidence 632 222221 3579999999999999999875
No 67
>PRK14967 putative methyltransferase; Provisional
Probab=99.32 E-value=4.2e-11 Score=107.33 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=80.7
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
...+|||+|||+|.++..+++.. ..+|+++|+|+.+++.+++++... ..+++++.+|..+.+ ++++||+|+
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~-----~~~~~~~~~d~~~~~---~~~~fD~Vi 106 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA-----GVDVDVRRGDWARAV---EFRPFDVVV 106 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh-----CCeeEEEECchhhhc---cCCCeeEEE
Confidence 45799999999999999998863 458999999999999999987653 236889999987654 257899999
Q ss_pred EcCCCCCCCcc-----------------ccchHHHHHHHHHhcCCCcEEEEe
Q 020933 206 VDSSDPIGPAQ-----------------ELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 206 ~D~~~~~~~~~-----------------~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
++++....... ......+++.+.++|||||++++.
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 98643211100 001245788899999999999874
No 68
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.32 E-value=1.1e-11 Score=112.65 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=89.1
Q ss_pred CCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCC-----C
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP-----E 198 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~-----~ 198 (319)
.++++||+||+++|..+.++++. ++..+|+.+|++++..+.|+++|... ++. .+++++.+|+.+.+.... .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--g~~-~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--GVA-HKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CCC-CceEEEeccHHHHHHHHHhccccC
Confidence 36889999999999999999874 45679999999999999999999875 444 599999999999987631 2
Q ss_pred CCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 199 GTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 199 ~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
++||+|++|..... ..++|+.+.++|+|||++++.
T Consensus 155 ~~fD~iFiDadK~~-------Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADKDN-------YINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCHHH-------hHHHHHHHHHhcCCCeEEEEc
Confidence 68999999976432 347899999999999999874
No 69
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.31 E-value=3.2e-11 Score=110.93 Aligned_cols=152 Identities=18% Similarity=0.293 Sum_probs=101.8
Q ss_pred CCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECC
Q 020933 80 DYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEID 159 (319)
Q Consensus 80 ~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid 159 (319)
|.|+|. -....+|..+.++.......++...+.+.+... ....++.+|||+|||+|.++..+++..+..+++++|++
T Consensus 65 p~~~i~-g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~--~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis 141 (275)
T PRK09328 65 PLQYIL-GEAEFWGLDFKVSPGVLIPRPETEELVEWALEA--LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDIS 141 (275)
T ss_pred CHHHHc-eeceEcCcEEEECCCceeCCCCcHHHHHHHHHh--ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECC
Confidence 555552 223345666666654445555433333333211 11235679999999999999999988777899999999
Q ss_pred hHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCC--------------Ccccc-------
Q 020933 160 KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIG--------------PAQEL------- 218 (319)
Q Consensus 160 ~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~--------------~~~~l------- 218 (319)
+.+++.+++++... ...+++++.+|..+.+ +.++||+|+++++.... +...+
T Consensus 142 ~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~---~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~ 214 (275)
T PRK09328 142 PEALAVARRNAKHG----LGARVEFLQGDWFEPL---PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGL 214 (275)
T ss_pred HHHHHHHHHHHHhC----CCCcEEEEEccccCcC---CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHH
Confidence 99999999987611 2358999999975433 24689999987653211 00011
Q ss_pred -chHHHHHHHHHhcCCCcEEEEec
Q 020933 219 -FEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 219 -~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
....+++.+.+.|+|||.+++..
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE
Confidence 12467888889999999999865
No 70
>PLN02244 tocopherol O-methyltransferase
Probab=99.31 E-value=9.1e-12 Score=118.56 Aligned_cols=107 Identities=20% Similarity=0.360 Sum_probs=83.0
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..+.+|||||||+|.++..+++.. ..+|++||+++.+++.+++..... +. .++++++++|+.+.. .++++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~--g~-~~~v~~~~~D~~~~~--~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ--GL-SDKVSFQVADALNQP--FEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc--CC-CCceEEEEcCcccCC--CCCCCccEE
Confidence 456799999999999999999865 468999999999999999876543 22 247999999987642 236899999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++.......+ ....+++++.++|||||.|++..
T Consensus 191 ~s~~~~~h~~----d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 191 WSMESGEHMP----DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EECCchhccC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 9743321111 14579999999999999998864
No 71
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.31 E-value=8.9e-11 Score=103.45 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=96.5
Q ss_pred EEEEEecCCeeEEEEc--CeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChH
Q 020933 84 VMVFQSSTYGKVLILD--GVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKM 161 (319)
Q Consensus 84 i~v~~~~~~g~~L~ld--g~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~ 161 (319)
+.|.-.+..|+.|..- .....+ -+..+..++..+.. .....+|||+|||+|.++.+++... ..+|++||+++.
T Consensus 13 mrIi~g~~~g~~l~~~~~~~~Rp~--~d~v~e~l~~~l~~--~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~ 87 (199)
T PRK10909 13 IRIIGGQWRGRKLPVPDSPGLRPT--TDRVRETLFNWLAP--VIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA 87 (199)
T ss_pred EEEEeeccCCCEeCCCCCCCcCcC--CHHHHHHHHHHHhh--hcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence 5566555566666541 111111 11223334443321 1245699999999999999765553 468999999999
Q ss_pred HHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHH--hcCCCcEEEE
Q 020933 162 VVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAK--ALRPGGVVST 239 (319)
Q Consensus 162 vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~--~LkpgG~lv~ 239 (319)
.++.+++++... +. .+++++.+|+.+++... .++||+|++|++...+. ..+.++.+.+ .|+|+|++++
T Consensus 88 a~~~a~~Nl~~~--~~--~~v~~~~~D~~~~l~~~-~~~fDlV~~DPPy~~g~-----~~~~l~~l~~~~~l~~~~iv~v 157 (199)
T PRK10909 88 VAQQLIKNLATL--KA--GNARVVNTNALSFLAQP-GTPHNVVFVDPPFRKGL-----LEETINLLEDNGWLADEALIYV 157 (199)
T ss_pred HHHHHHHHHHHh--CC--CcEEEEEchHHHHHhhc-CCCceEEEECCCCCCCh-----HHHHHHHHHHCCCcCCCcEEEE
Confidence 999999998765 22 37999999999887543 45799999998743221 3345666655 4899999998
Q ss_pred ecC
Q 020933 240 QAE 242 (319)
Q Consensus 240 ~~~ 242 (319)
...
T Consensus 158 e~~ 160 (199)
T PRK10909 158 ESE 160 (199)
T ss_pred Eec
Confidence 753
No 72
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.9e-11 Score=109.55 Aligned_cols=118 Identities=30% Similarity=0.463 Sum_probs=99.6
Q ss_pred CCCceeeEeeccccHHHHHHHh-cCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSR-HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
..+.+|||.|.|+|.++..|++ ..+..+|+.+|+.++..+.|++++... ++.+ ++++..+|..+... ++.||+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~d-~v~~~~~Dv~~~~~---~~~vDa 166 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGD-RVTLKLGDVREGID---EEDVDA 166 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--cccc-ceEEEecccccccc---ccccCE
Confidence 4678999999999999999997 456689999999999999999999876 5554 59999999988864 358999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhh
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQI 261 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 261 (319)
|++|.++|| ++++.++++|+|||.+++-+.+ -+..++.+..+++.
T Consensus 167 v~LDmp~PW---------~~le~~~~~Lkpgg~~~~y~P~----veQv~kt~~~l~~~ 211 (256)
T COG2519 167 VFLDLPDPW---------NVLEHVSDALKPGGVVVVYSPT----VEQVEKTVEALRER 211 (256)
T ss_pred EEEcCCChH---------HHHHHHHHHhCCCcEEEEEcCC----HHHHHHHHHHHHhc
Confidence 999999975 6799999999999999986543 35667777777766
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.31 E-value=1.6e-11 Score=109.37 Aligned_cols=101 Identities=23% Similarity=0.329 Sum_probs=79.3
Q ss_pred CCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.++.+|||||||+|.++..+++.. +..+|+++|+++++++.+++++... + -.+++++++|+..... +.+.||+
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~--g--~~~v~~~~gd~~~~~~--~~~~fD~ 148 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL--G--YDNVEVIVGDGTLGYE--ENAPYDR 148 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--C--CCCeEEEECCcccCCC--cCCCcCE
Confidence 456899999999999999888763 3468999999999999999998765 2 2479999999876542 2478999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+++...+ +..+.+.+.|||||.+++..
T Consensus 149 I~~~~~~~----------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAAGP----------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEECCCcc----------cchHHHHHhhCCCcEEEEEE
Confidence 99875432 22345677899999999853
No 74
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.30 E-value=1.1e-11 Score=110.75 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=104.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCC------ceEEEEECChHHHHHHHhccccccCC-CCCCCeEEEEcChHHHHHhCCC
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSV------EKIDICEIDKMVVDVSKQFFPDVAVG-FEDPRVTLHIGDGVAFLKAVPE 198 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~------~~v~~VEid~~vi~~ak~~~~~~~~~-~~~~~v~v~~~D~~~~l~~~~~ 198 (319)
+..++||++||||-++..++++-.. .+|+++||+|.+++++++...+. + ..++++.++.+|+.+.. +++
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~--~l~~~~~~~w~~~dAE~Lp--Fdd 175 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR--PLKASSRVEWVEGDAEDLP--FDD 175 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc--CCCcCCceEEEeCCcccCC--CCC
Confidence 4579999999999999999987544 79999999999999999986332 2 24567999999998864 457
Q ss_pred CCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCceeEeEEeecccCC
Q 020933 199 GTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPR 278 (319)
Q Consensus 199 ~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~ 278 (319)
.+||+..+...--..+. -...+++++|+|||||+|.+-. +.+ .-...++.+...+.-. -+|..+
T Consensus 176 ~s~D~yTiafGIRN~th----~~k~l~EAYRVLKpGGrf~cLe---Fsk--v~~~~l~~fy~~ysf~------VlpvlG- 239 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTH----IQKALREAYRVLKPGGRFSCLE---FSK--VENEPLKWFYDQYSFD------VLPVLG- 239 (296)
T ss_pred CcceeEEEecceecCCC----HHHHHHHHHHhcCCCcEEEEEE---ccc--cccHHHHHHHHhhhhh------hhchhh-
Confidence 89999875321111110 2467999999999999987532 111 1112333333332111 234332
Q ss_pred CeeEEEEcCCCCCCCCccCccCCCccccccc
Q 020933 279 TFLPSCSAVNSDLSPSMPSLHGHPFPIRIKW 309 (319)
Q Consensus 279 g~~~~~S~~~~~~~~~~~~l~~~p~~~~~~~ 309 (319)
. +++... ..+.++..++.++|..++|+.
T Consensus 240 -~-~iagd~-~sYqYLveSI~rfp~qe~f~~ 267 (296)
T KOG1540|consen 240 -E-IIAGDR-KSYQYLVESIRRFPPQEEFAS 267 (296)
T ss_pred -H-hhhhhH-hhhhhHHhhhhcCCCHHHHHH
Confidence 1 222221 356677777777777766654
No 75
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=2.4e-11 Score=107.56 Aligned_cols=101 Identities=24% Similarity=0.308 Sum_probs=78.9
Q ss_pred CCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
...+|||||||+|..+..+++.. +..+|+++|+++.+++.+++++... ++. .+++++.+|+.+.+.. ..+||+|
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--~~~-~~v~~~~~d~~~~~~~--~~~fD~I 146 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--GYW-GVVEVYHGDGKRGLEK--HAPFDAI 146 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCC-CcEEEEECCcccCCcc--CCCccEE
Confidence 45799999999999998888753 2468999999999999999988654 222 3699999998775432 4689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+++.... .+.+.+.+.|+|||++++..
T Consensus 147 i~~~~~~----------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 147 IVTAAAS----------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEccCcc----------hhhHHHHHhcCcCcEEEEEE
Confidence 9876532 23356778999999998853
No 76
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.29 E-value=1.2e-11 Score=110.41 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=80.4
Q ss_pred ceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEc
Q 020933 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVD 207 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D 207 (319)
++|||||||+|..+..+++..+..+|+++|+++.+++.+++++... ++ ..+++++.+|..+.. . .++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--gl-~~~i~~~~~d~~~~~--~-~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--GL-QGRIRIFYRDSAKDP--F-PDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--CC-CcceEEEecccccCC--C-CCCCCEeehH
Confidence 4799999999999999988766678999999999999999987653 33 348999999975432 1 4689999953
Q ss_pred CCC-CCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 208 SSD-PIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 208 ~~~-~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
..- .... ...+|+.++++|+|||.+++..
T Consensus 75 ~~l~~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 75 EVIHHIKD-----KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHHhCCC-----HHHHHHHHHHHcCCCCEEEEEE
Confidence 221 1111 4579999999999999999864
No 77
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.29 E-value=2.5e-11 Score=125.68 Aligned_cols=114 Identities=15% Similarity=0.233 Sum_probs=90.4
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
++++|||||||+|+++..+++. +..+|++||+|+.+++.+++++..+ +++..+++++++|+.++++.. .++||+||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~n--g~~~~~v~~i~~D~~~~l~~~-~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALN--GLSGRQHRLIQADCLAWLKEA-REQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh--CCCccceEEEEccHHHHHHHc-CCCcCEEE
Confidence 4689999999999999999987 4568999999999999999998765 444358999999999998765 57899999
Q ss_pred EcCCCCCCCcc--c-----cchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 206 VDSSDPIGPAQ--E-----LFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 206 ~D~~~~~~~~~--~-----l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+|++.-..... . -...++++.+.++|+|||++++.+++
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99764221100 0 01245788889999999999887654
No 78
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.28 E-value=2.6e-11 Score=106.48 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=75.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++..... +-++++...|...+. . +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~~-----~~~v~~~~~d~~~~~--~-~~~fD~I~ 99 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKARE-----NLPLRTDAYDINAAA--L-NEDYDFIF 99 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHh-----CCCceeEeccchhcc--c-cCCCCEEE
Confidence 46799999999999999999874 58999999999999998876543 123677778865432 2 46799999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
+.......+.. ....+++.++++|+|||++++
T Consensus 100 ~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 100 STVVFMFLQAG--RVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EecccccCCHH--HHHHHHHHHHHHhCCCcEEEE
Confidence 75433222111 135789999999999998544
No 79
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.28 E-value=4.7e-11 Score=107.05 Aligned_cols=112 Identities=25% Similarity=0.344 Sum_probs=98.0
Q ss_pred ceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCC-CCccEEEE
Q 020933 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPE-GTYDAVIV 206 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~-~~fDvIi~ 206 (319)
..+||||||.|..+..+|+..|...+.+||+...++..|.+..... +-+|+.++++|+.+++....+ ++.|-|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~----~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL----GLKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc----CCCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 5899999999999999999888999999999999999888877654 223899999999999987744 49999999
Q ss_pred cCCCCCCC----ccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 207 DSSDPIGP----AQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 207 D~~~~~~~----~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
..+||+.- ..++...+|++.+++.|+|||.|.+.+..
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 99999854 45689999999999999999999997754
No 80
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=6.5e-11 Score=109.68 Aligned_cols=153 Identities=15% Similarity=0.208 Sum_probs=106.7
Q ss_pred eCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEE
Q 020933 78 KSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICE 157 (319)
Q Consensus 78 ~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VE 157 (319)
.-|-|+|.- .-..+|..+.++-.+....+|.....+.+.. .... ...+|||||||+|.++..+++..+..+|+++|
T Consensus 66 ~~P~~yi~g-~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~--~~~~-~~~~ilDlGTGSG~iai~la~~~~~~~V~a~D 141 (280)
T COG2890 66 GEPVAYILG-SAEFGGLRFKVDEGVLIPRPDTELLVEAALA--LLLQ-LDKRILDLGTGSGAIAIALAKEGPDAEVIAVD 141 (280)
T ss_pred CCCHhHhhc-cCeecceeeeeCCCceecCCchHHHHHHHHH--hhhh-cCCcEEEecCChHHHHHHHHhhCcCCeEEEEE
Confidence 345666632 2345678888888888888885544443221 1111 11289999999999999999998878999999
Q ss_pred CChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCC-----cc--------c-------
Q 020933 158 IDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGP-----AQ--------E------- 217 (319)
Q Consensus 158 id~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~-----~~--------~------- 217 (319)
||+..+++|+++...+ ++ .++.++.+|.++-+ .++||+|++|++.-... +. .
T Consensus 142 is~~Al~~A~~Na~~~--~l--~~~~~~~~dlf~~~----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dG 213 (280)
T COG2890 142 ISPDALALARENAERN--GL--VRVLVVQSDLFEPL----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDG 213 (280)
T ss_pred CCHHHHHHHHHHHHHc--CC--ccEEEEeeeccccc----CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccH
Confidence 9999999999998765 22 45667766744433 35999999887641110 00 0
Q ss_pred -cchHHHHHHHHHhcCCCcEEEEecC
Q 020933 218 -LFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 218 -l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
-....|++.+.+.|+|||++++..+
T Consensus 214 l~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 214 LEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred HHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1234678888999999999998753
No 81
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.28 E-value=2.6e-11 Score=108.50 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=82.4
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..+.+|||||||+|.++..+++..+..+++++|+++.+++.+++.+. ++++++.+|..+... ++++||+|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~--~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLPL--EDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCCC--CCCceeEE
Confidence 34579999999999999999988777789999999999999998753 378899999876532 35789999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++....+.... ...+++.+.++|+|||.+++..
T Consensus 103 i~~~~l~~~~~----~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 103 VSNLALQWCDD----LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred EEhhhhhhccC----HHHHHHHHHHHcCCCcEEEEEe
Confidence 97654322211 3478999999999999999865
No 82
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.5e-11 Score=106.45 Aligned_cols=101 Identities=26% Similarity=0.421 Sum_probs=83.1
Q ss_pred CCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
...+.+||+||||+|+.+..+++.. .+|+.+|++++..+.|++++... ++ .++.++++|+...... ...||.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~l--g~--~nV~v~~gDG~~G~~~--~aPyD~ 141 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETL--GY--ENVTVRHGDGSKGWPE--EAPYDR 141 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHc--CC--CceEEEECCcccCCCC--CCCcCE
Confidence 3466899999999999999999885 48999999999999999999876 33 4699999999987643 478999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
|++....+.-| +.+.+.||+||++++-.+
T Consensus 142 I~Vtaaa~~vP----------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAAPEVP----------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEeeccCCCC----------HHHHHhcccCCEEEEEEc
Confidence 99877665544 244557999999998554
No 83
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.27 E-value=4.9e-11 Score=103.45 Aligned_cols=126 Identities=17% Similarity=0.264 Sum_probs=88.2
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
+.-.++||+|||.|.++..|+.+. .+++++|+++..++.|++.+... +++++++.|..++. ++++||+|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~------~~V~~~~~dvp~~~---P~~~FDLI 110 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGL------PHVEWIQADVPEFW---PEGRFDLI 110 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT------SS-EEEE
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCC------CCeEEEECcCCCCC---CCCCeeEE
Confidence 345799999999999999999985 68999999999999999998743 68999999987764 47899999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec-----CCcccChHHHHHHHHHHHhhc
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA-----ESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~-----~~~~~~~~~~~~~~~~l~~~F 262 (319)
++.-....-.+.. ....+++.+.+.|+|||.+|+-. +..|.|..--+.+.+.+.+.|
T Consensus 111 V~SEVlYYL~~~~-~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 111 VLSEVLYYLDDAE-DLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHL 172 (201)
T ss_dssp EEES-GGGSSSHH-HHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred EEehHhHcCCCHH-HHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHh
Confidence 9643221111100 12357889999999999999753 234666666677888888888
No 84
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.27 E-value=5.9e-11 Score=110.50 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=86.2
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+++|||+|||+|.++..+++.. ..+|+++|+|+.+++.|++++... +.. .++.+..+|.... .+++||+|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n--~~~-~~~~~~~~~~~~~----~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELN--QVS-DRLQVKLIYLEQP----IEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc--CCC-cceEEEecccccc----cCCCceEEE
Confidence 46899999999999998888764 568999999999999999987654 222 3677777763222 256899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
++.... ....+++.+.++|||||.+++..- .......+.+.+++.|
T Consensus 231 an~~~~-------~l~~ll~~~~~~LkpgG~li~sgi----~~~~~~~v~~~~~~~f 276 (288)
T TIGR00406 231 ANILAE-------VIKELYPQFSRLVKPGGWLILSGI----LETQAQSVCDAYEQGF 276 (288)
T ss_pred EecCHH-------HHHHHHHHHHHHcCCCcEEEEEeC----cHhHHHHHHHHHHccC
Confidence 875421 124688999999999999998642 1233455555555556
No 85
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.26 E-value=3.1e-11 Score=110.91 Aligned_cols=105 Identities=24% Similarity=0.322 Sum_probs=80.8
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.+..+|||||||+|..+..+++.. ..+|+++|+++.+++.+++++.. ..+++++++|+.+.. .++++||+|
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~~--~~~~~FD~V 121 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKKD--FPENTFDMI 121 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccCC--CCCCCeEEE
Confidence 456799999999999999988764 35899999999999999988653 258999999976431 236789999
Q ss_pred EE-cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~-D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++ +...+... . ....+++.++++|||||.+++..
T Consensus 122 ~s~~~l~h~~~-~--d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 122 YSRDAILHLSY-A--DKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EEhhhHHhCCH-H--HHHHHHHHHHHHcCCCcEEEEEE
Confidence 97 32222211 0 13578999999999999999864
No 86
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.25 E-value=7.9e-11 Score=104.64 Aligned_cols=120 Identities=17% Similarity=0.242 Sum_probs=85.6
Q ss_pred CCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHH------HhCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFL------KAVP 197 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l------~~~~ 197 (319)
+++.+|||||||+|..+..+++.. +..+|++||+++. . ..++++++++|+.+.- ....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~------~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------D------PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------c------CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 456799999999999999998864 3468999999982 1 1246899999987641 1223
Q ss_pred CCCccEEEEcCCCCCCCcc--c-----cchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcC
Q 020933 198 EGTYDAVIVDSSDPIGPAQ--E-----LFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFK 263 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~~~~--~-----l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~ 263 (319)
.++||+|++|......... . .....+++.+.++|+|||.|++-. ...+.+.+++..+++.|.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~----~~~~~~~~~l~~l~~~f~ 183 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV----FQGEGFDEYLREIRSLFT 183 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE----ecCcCHHHHHHHHHhCce
Confidence 5789999998643322110 0 012468899999999999999842 233556777888888894
No 87
>PLN03075 nicotianamine synthase; Provisional
Probab=99.25 E-value=5.9e-11 Score=109.95 Aligned_cols=109 Identities=18% Similarity=0.294 Sum_probs=82.4
Q ss_pred CCceeeEeeccccHHHHH-H-HhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 126 NPKKVLVIGGGDGGVLRE-V-SRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~-l-~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.+++||+||||.|.++.. + +++.+..+++++|+|+++++.|++.+... .++ .++++|+.+|+.+.... .++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL-~~rV~F~~~Da~~~~~~--l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDL-SKRMFFHTADVMDVTES--LKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCc-cCCcEEEECchhhcccc--cCCcCE
Confidence 789999999998755433 3 34667789999999999999999998531 133 35899999999875321 368999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|++++--.+... ...++++.+.+.|+|||++++.+
T Consensus 199 VF~~ALi~~dk~---~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKE---EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEEecccccccc---cHHHHHHHHHHhcCCCcEEEEec
Confidence 998842211111 14689999999999999999975
No 88
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.25 E-value=7.2e-11 Score=109.19 Aligned_cols=134 Identities=22% Similarity=0.268 Sum_probs=94.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCccEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fDvI 204 (319)
+.++||++-|=||+++...++. +..+|+.||.|...++.+++++..+ +++..+++++.+|++++++.. ..++||+|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lN--g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALN--GLDLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHT--T-CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHc--CCCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 5689999999999999988765 5678999999999999999998876 555578999999999998643 24699999
Q ss_pred EEcCCCCCCCcccc--chHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 205 IVDSSDPIGPAQEL--FEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 205 i~D~~~~~~~~~~l--~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
|+|++.-......+ ...+.++.+.++|+|||++++.+++.....+.+.+.++....-+
T Consensus 200 IlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~ 259 (286)
T PF10672_consen 200 ILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREV 259 (286)
T ss_dssp EE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHC
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccc
Confidence 99987532111111 12356777889999999999888887777676666555544444
No 89
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.23 E-value=5.5e-11 Score=108.19 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=77.9
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+|||||||+|.++..+++.. .+|+++|+++.+++.+++... ...++++|+.... .++++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~~~--~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA---------ADHYLAGDIESLP--LATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC---------CCCEEEcCcccCc--CCCCcEEEEE
Confidence 46799999999999999888763 689999999999999998753 2467888976642 2357899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++..-.+... ...+++++.++|+|||.+++..
T Consensus 109 s~~~l~~~~d----~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 109 SNLAVQWCGN----LSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ECchhhhcCC----HHHHHHHHHHHcCCCeEEEEEe
Confidence 8665433221 3478999999999999999864
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=99.22 E-value=1.3e-10 Score=100.40 Aligned_cols=112 Identities=18% Similarity=0.231 Sum_probs=82.7
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.+.++|||+|||+|.++..+++. ..+|+++|+++.+++.+++++... +..+.++.++.+|..+.+ .+++||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~~d~~~~~---~~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLN--NIRNNGVEVIRSDLFEPF---RGDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHc--CCCCcceEEEeccccccc---cccCceEE
Confidence 35678999999999999999988 378999999999999999887654 222223889999976643 24589999
Q ss_pred EEcCCCCCCCcc-----------------ccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 205 IVDSSDPIGPAQ-----------------ELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 205 i~D~~~~~~~~~-----------------~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+++.+.....+. ......+++.+.++|||||.+++...+
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 987543111000 011346899999999999998876543
No 91
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.22 E-value=2.4e-11 Score=109.02 Aligned_cols=103 Identities=17% Similarity=0.303 Sum_probs=77.5
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCC----CeEEEEcChHHHHHhCCCCCcc
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDP----RVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~----~v~v~~~D~~~~l~~~~~~~fD 202 (319)
+++|||+|||+|.++..|++.. .+|+++|++++++++|+++. ... ...+. ++++.+.|+... .++||
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~-~~d-P~~~~~~~y~l~~~~~~~E~~-----~~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHK-KMD-PVLEGAIAYRLEYEDTDVEGL-----TGKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhh-hcC-chhccccceeeehhhcchhhc-----ccccc
Confidence 4689999999999999999986 78999999999999999983 321 11122 566777775544 46699
Q ss_pred EEEEc-CCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 203 AVIVD-SSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 203 vIi~D-~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+|++. ...+... -.+|++.+.++|||||.+++.+.+
T Consensus 161 aVvcsevleHV~d-----p~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 161 AVVCSEVLEHVKD-----PQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeeeHHHHHHHhC-----HHHHHHHHHHHhCCCCceEeeehh
Confidence 99962 2222221 358999999999999999987643
No 92
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.22 E-value=7.2e-11 Score=108.75 Aligned_cols=106 Identities=19% Similarity=0.305 Sum_probs=81.4
Q ss_pred CCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
..+.+|||||||+|..+..+++. .+..+|+++|+++.+++.+++++... + .++++++.+|+.+.. .+++.||+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~--g--~~~v~~~~~d~~~l~--~~~~~fD~ 149 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA--G--YTNVEFRLGEIEALP--VADNSVDV 149 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc--C--CCCEEEEEcchhhCC--CCCCceeE
Confidence 45679999999999988877765 34458999999999999999987544 2 248899999976532 23568999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|+++......+. ....++++.++|||||.+++.
T Consensus 150 Vi~~~v~~~~~d----~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 150 IISNCVINLSPD----KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEcCcccCCCC----HHHHHHHHHHHcCCCcEEEEE
Confidence 997754322221 357899999999999999885
No 93
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.21 E-value=5.6e-11 Score=105.48 Aligned_cols=113 Identities=22% Similarity=0.329 Sum_probs=82.7
Q ss_pred hHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcC
Q 020933 110 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD 188 (319)
Q Consensus 110 ~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D 188 (319)
..+-.|+.++. ..+..+|||||+|+|..+..+++. .+..+|++||+++.+++.|++++... ...+++++++|
T Consensus 59 ~~~a~~l~~L~---l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~----~~~nv~~~~gd 131 (209)
T PF01135_consen 59 SMVARMLEALD---LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL----GIDNVEVVVGD 131 (209)
T ss_dssp HHHHHHHHHTT---C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH----TTHSEEEEES-
T ss_pred HHHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh----ccCceeEEEcc
Confidence 34556666643 346789999999999999999886 34457999999999999999998865 33589999999
Q ss_pred hHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 189 GVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 189 ~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+..-... ...||.|++...-+.. -..+.+.|++||++++-.
T Consensus 132 g~~g~~~--~apfD~I~v~~a~~~i----------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 132 GSEGWPE--EAPFDRIIVTAAVPEI----------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGGTTGG--G-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEE
T ss_pred hhhcccc--CCCcCEEEEeeccchH----------HHHHHHhcCCCcEEEEEE
Confidence 9876643 4689999987654322 234556799999999854
No 94
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.21 E-value=2.7e-10 Score=99.33 Aligned_cols=119 Identities=19% Similarity=0.307 Sum_probs=81.6
Q ss_pred CCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH-----H-HhCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF-----L-KAVP 197 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~-----l-~~~~ 197 (319)
+.+.+|||||||+|+++..+++.. +..+|+++|+++++ . .++++++++|..+. + ...+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 456799999999999999887753 45689999999864 1 13578888887542 1 1123
Q ss_pred CCCccEEEEcCCCCC-CC--cccc----chHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 198 EGTYDAVIVDSSDPI-GP--AQEL----FEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~-~~--~~~l----~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
.++||+|++|...+. +. ..++ ....+++.+.++|+|||.+++.. .....+..++..++..|
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~----~~~~~~~~~l~~l~~~~ 163 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV----FQGEEIDEYLNELRKLF 163 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE----ccCccHHHHHHHHHhhh
Confidence 568999998864321 11 0110 12568999999999999999853 22344556777777777
No 95
>PRK06922 hypothetical protein; Provisional
Probab=99.19 E-value=8.4e-11 Score=118.39 Aligned_cols=111 Identities=17% Similarity=0.230 Sum_probs=84.1
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+|||||||+|..+..+++..+..+++++|+++.+++.|++..... ..+++++++|+.++....++++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence 467999999999999999988667789999999999999999876432 247889999987743223467899999
Q ss_pred EcCCCCCC----C-c----cccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIG----P-A----QELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~----~-~----~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+...-+.. + . ..-....+++.+.++|||||.+++..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 75432210 0 0 01123578999999999999999864
No 96
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.19 E-value=8.5e-11 Score=109.33 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=78.2
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+|||||||+|..+..+++.. .+|+++|+|+.+++.++++.... ..++++...|..... . +++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~~~-----~l~v~~~~~D~~~~~--~-~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAEKE-----NLNIRTGLYDINSAS--I-QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHc-----CCceEEEEechhccc--c-cCCccEEE
Confidence 45799999999999999999873 68999999999999999887543 236888888876542 2 57899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
+...-...... ....+++.+.++|+|||++++
T Consensus 190 ~~~vl~~l~~~--~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMFLNRE--RIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred EcchhhhCCHH--HHHHHHHHHHHhcCCCcEEEE
Confidence 76443221111 135789999999999998654
No 97
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.18 E-value=2.2e-10 Score=104.51 Aligned_cols=112 Identities=20% Similarity=0.242 Sum_probs=78.9
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..+.+|||||||+|.++..+++.. ..+|+++|+|+.+++.|++++... +.. .++.+..+| .+||+|
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~--~~~-~~~~~~~~~----------~~fD~V 183 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELN--GVE-LNVYLPQGD----------LKADVI 183 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc--CCC-ceEEEccCC----------CCcCEE
Confidence 467899999999999998887764 457999999999999999987654 221 233333322 279999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhh
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQI 261 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 261 (319)
+++..... ...+++.+.++|||||.+++.... ......+.+.+++.
T Consensus 184 vani~~~~-------~~~l~~~~~~~LkpgG~lilsgi~----~~~~~~v~~~l~~~ 229 (250)
T PRK00517 184 VANILANP-------LLELAPDLARLLKPGGRLILSGIL----EEQADEVLEAYEEA 229 (250)
T ss_pred EEcCcHHH-------HHHHHHHHHHhcCCCcEEEEEECc----HhhHHHHHHHHHHC
Confidence 98653211 246789999999999999986421 22334455555543
No 98
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=1.6e-10 Score=114.78 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=81.2
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|+++.... ..+++++++|+.... .++++||+|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~-----~~~v~~~~~d~~~~~--~~~~~fD~I 336 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR-----KCSVEFEVADCTKKT--YPDNSFDVI 336 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC-----CCceEEEEcCcccCC--CCCCCEEEE
Confidence 356799999999999999998875 468999999999999999876432 347999999976542 235789999
Q ss_pred EEcCCC-CCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSD-PIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~-~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++...- +... ...+++.++++|||||.+++..
T Consensus 337 ~s~~~l~h~~d-----~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 337 YSRDTILHIQD-----KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred EECCcccccCC-----HHHHHHHHHHHcCCCeEEEEEE
Confidence 974332 2211 3578999999999999999864
No 99
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.18 E-value=4.4e-11 Score=115.75 Aligned_cols=148 Identities=24% Similarity=0.383 Sum_probs=118.0
Q ss_pred hHHHHHH-HhccccC------CCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCe
Q 020933 110 CAYQEMI-THLPLCS------IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRV 182 (319)
Q Consensus 110 ~~Y~e~l-~~l~l~~------~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v 182 (319)
..||.+| ..+++.. +..+.++|++|-|+|.+...+..+.+..++++||+||.++++|+++|... ...|.
T Consensus 272 s~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~----q~~r~ 347 (482)
T KOG2352|consen 272 SQYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFM----QSDRN 347 (482)
T ss_pred cchhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchh----hhhhh
Confidence 5678876 3444442 23467999999999999999888777789999999999999999999765 34489
Q ss_pred EEEEcChHHHHHhC-----CCCCccEEEEcCCCCC-----CCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHH
Q 020933 183 TLHIGDGVAFLKAV-----PEGTYDAVIVDSSDPI-----GPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIE 252 (319)
Q Consensus 183 ~v~~~D~~~~l~~~-----~~~~fDvIi~D~~~~~-----~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~ 252 (319)
+++..||.+|+++. .+..||+++.|...+. +++..+....++..++..|.|.|++++|.-. .......
T Consensus 348 ~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~--r~~~~~~ 425 (482)
T KOG2352|consen 348 KVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT--RNSSFKD 425 (482)
T ss_pred hhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec--CCcchhH
Confidence 99999999999764 2457999999665432 3566677889999999999999999998633 3455677
Q ss_pred HHHHHHHhhcC
Q 020933 253 DIVANCRQIFK 263 (319)
Q Consensus 253 ~~~~~l~~~F~ 263 (319)
.+...++++|+
T Consensus 426 ~~~~~l~~vf~ 436 (482)
T KOG2352|consen 426 EVLMNLAKVFP 436 (482)
T ss_pred HHHHhhhhhhH
Confidence 88889999996
No 100
>PHA03411 putative methyltransferase; Provisional
Probab=99.17 E-value=2.5e-10 Score=104.46 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=83.0
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
...+|||+|||+|.++..++++.+..+|++||+|+.+++.+++.+ ++++++++|++++.. +.+||+||
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~---~~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES---NEKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc---cCCCcEEE
Confidence 356999999999999998887654578999999999999999864 368899999988753 46899999
Q ss_pred EcCCCCCCCc---cc-------------cchHHHHHHHHHhcCCCcEEEEe-cCCcccChH
Q 020933 206 VDSSDPIGPA---QE-------------LFEKPFFESVAKALRPGGVVSTQ-AESIWLHMH 249 (319)
Q Consensus 206 ~D~~~~~~~~---~~-------------l~~~~f~~~~~~~LkpgG~lv~~-~~~~~~~~~ 249 (319)
++++...... .. +.-..+++.....|+|+|.+.+- ...+.+|..
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~s 192 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGT 192 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccccc
Confidence 9876532111 11 11246788889999999976543 333555543
No 101
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.17 E-value=4.8e-10 Score=103.11 Aligned_cols=130 Identities=24% Similarity=0.266 Sum_probs=93.6
Q ss_pred CCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.++.+|||+|||.|+.+..+++.. +...|+++|+++..++.+++++... +. .+++++..|+..+... .++||+
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--g~--~~v~~~~~D~~~~~~~--~~~fD~ 143 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--GV--LNVAVTNFDGRVFGAA--VPKFDA 143 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--CC--CcEEEecCCHHHhhhh--ccCCCE
Confidence 355799999999999999988753 2358999999999999999998765 22 4699999998876432 356999
Q ss_pred EEEcCCCCC-CC----cc--------c-----cchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 204 VIVDSSDPI-GP----AQ--------E-----LFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 204 Ii~D~~~~~-~~----~~--------~-----l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
|++|++... +. +. . ....++++.+.+.|||||+++..+++.. .+.-+.+++.+.+.+
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~--~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE--PEENEAVVDYLLEKR 218 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC--hHHHHHHHHHHHHhC
Confidence 999986431 10 00 0 0235688999999999999998876642 222244444444444
No 102
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=2.3e-10 Score=112.25 Aligned_cols=116 Identities=17% Similarity=0.296 Sum_probs=87.8
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.++.+|||+|||+|+.+..+++..+..+|+++|+++.+++.+++++... + .+++++++|+.+.......++||.|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~--g---~~~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL--G---LKATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--C---CCeEEEEcCcccchhhcccCCCCEE
Confidence 3567999999999999999998754468999999999999999998765 2 2478999998764322224689999
Q ss_pred EEcCCCCC-CC----cc--------c-----cchHHHHHHHHHhcCCCcEEEEecCCcc
Q 020933 205 IVDSSDPI-GP----AQ--------E-----LFEKPFFESVAKALRPGGVVSTQAESIW 245 (319)
Q Consensus 205 i~D~~~~~-~~----~~--------~-----l~~~~f~~~~~~~LkpgG~lv~~~~~~~ 245 (319)
++|++... +. +. . ....++++.+.+.|||||.++..+++..
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 99986431 11 00 0 0124689999999999999998876643
No 103
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=5.1e-10 Score=109.79 Aligned_cols=116 Identities=18% Similarity=0.297 Sum_probs=89.2
Q ss_pred CCCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
..++.+|||+|||+|+.+..+++.. +..+|+++|+++..++.+++++... +. .+++++++|+..+.... .++||
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--g~--~~v~~~~~Da~~l~~~~-~~~fD 309 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--KL--SSIEIKIADAERLTEYV-QDTFD 309 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--CC--CeEEEEECchhhhhhhh-hccCC
Confidence 3456799999999999999988763 3568999999999999999998765 32 36899999998764322 46899
Q ss_pred EEEEcCCCC-CCCc---cc--------------cchHHHHHHHHHhcCCCcEEEEecCCc
Q 020933 203 AVIVDSSDP-IGPA---QE--------------LFEKPFFESVAKALRPGGVVSTQAESI 244 (319)
Q Consensus 203 vIi~D~~~~-~~~~---~~--------------l~~~~f~~~~~~~LkpgG~lv~~~~~~ 244 (319)
.|++|++.. .+.. .. -...+++..+.+.|||||+++..+++.
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 999998752 2210 00 023567889999999999999988764
No 104
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.16 E-value=1.6e-10 Score=109.42 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=79.2
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
...+|||||||+|.++..+++..+..+|+++|+++.+++.++++.. ..+++++.+|+.+.. .++++||+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~lp--~~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDLP--FPTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhCC--CCCCceeEEE
Confidence 4569999999999999998876555789999999999999998754 246889999987642 2357899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+...-...+. ....++++.++|||||.+++.
T Consensus 184 s~~~L~~~~d----~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 184 SAGSIEYWPD----PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EcChhhhCCC----HHHHHHHHHHhcCCCcEEEEE
Confidence 7433222211 246899999999999998764
No 105
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=4.3e-10 Score=110.81 Aligned_cols=115 Identities=18% Similarity=0.312 Sum_probs=87.9
Q ss_pred CCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.++.+|||+|||+|+.+..++++. +..+|+++|+++..++.+++++... +. .+++++++|+.++.... .++||+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~--g~--~~v~~~~~D~~~~~~~~-~~~fD~ 323 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL--GL--TNIETKALDARKVHEKF-AEKFDK 323 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CC--CeEEEEeCCcccccchh-cccCCE
Confidence 456799999999999999998863 4578999999999999999998765 33 35999999998765333 368999
Q ss_pred EEEcCCCC-CC-----Ccc-------cc-----chHHHHHHHHHhcCCCcEEEEecCCc
Q 020933 204 VIVDSSDP-IG-----PAQ-------EL-----FEKPFFESVAKALRPGGVVSTQAESI 244 (319)
Q Consensus 204 Ii~D~~~~-~~-----~~~-------~l-----~~~~f~~~~~~~LkpgG~lv~~~~~~ 244 (319)
|++|++.. .+ +.. .+ ...++++.+.++|||||.++..+++.
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 99997632 11 000 00 12468999999999999999877654
No 106
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.15 E-value=2.4e-10 Score=103.67 Aligned_cols=124 Identities=23% Similarity=0.378 Sum_probs=92.9
Q ss_pred CCCCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH-HHHhCCCCC
Q 020933 123 SIPNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA-FLKAVPEGT 200 (319)
Q Consensus 123 ~~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~-~l~~~~~~~ 200 (319)
...++.+|||.|.|+|.++..+++. .+..+|...|+.++..+.|+++|... ++. .++++.+.|..+ -.....+..
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--gl~-~~v~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--GLD-DNVTVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--TCC-TTEEEEES-GGCG--STT-TTS
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--CCC-CCceeEecceecccccccccCc
Confidence 3457789999999999999999974 56679999999999999999999876 443 489999999853 221111468
Q ss_pred ccEEEEcCCCCCCCccccchHHHHHHHHHhc-CCCcEEEEecCCcccChHHHHHHHHHHHh-hc
Q 020933 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKAL-RPGGVVSTQAESIWLHMHIIEDIVANCRQ-IF 262 (319)
Q Consensus 201 fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~L-kpgG~lv~~~~~~~~~~~~~~~~~~~l~~-~F 262 (319)
+|.|++|.++|+. .+..+.++| ++||++++-+.+ .+...+..+.+++ -|
T Consensus 114 ~DavfLDlp~Pw~---------~i~~~~~~L~~~gG~i~~fsP~----ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 114 FDAVFLDLPDPWE---------AIPHAKRALKKPGGRICCFSPC----IEQVQKTVEALREHGF 164 (247)
T ss_dssp EEEEEEESSSGGG---------GHHHHHHHE-EEEEEEEEEESS----HHHHHHHHHHHHHTTE
T ss_pred ccEEEEeCCCHHH---------HHHHHHHHHhcCCceEEEECCC----HHHHHHHHHHHHHCCC
Confidence 9999999999864 588999999 899999987654 3556666666665 36
No 107
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.14 E-value=3.2e-10 Score=107.49 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=84.0
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
+++.+|||+|||+|+++.+++.. ..+++++|+|+.+++.+++++... +. .+++++.+|+.+... ++++||+|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~--g~--~~i~~~~~D~~~l~~--~~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHY--GI--EDFFVKRGDATKLPL--SSESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHh--CC--CCCeEEecchhcCCc--ccCCCCEE
Confidence 45678999999999999887765 368999999999999999988654 22 348899999887532 25789999
Q ss_pred EEcCCCCCCCc--cc---cchHHHHHHHHHhcCCCcEEEEecC
Q 020933 205 IVDSSDPIGPA--QE---LFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 205 i~D~~~~~~~~--~~---l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
++|++...... .. ....++++.+.++|+|||.+++...
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 99976533211 11 1135789999999999999987653
No 108
>PRK08317 hypothetical protein; Provisional
Probab=99.14 E-value=4.1e-10 Score=100.49 Aligned_cols=106 Identities=25% Similarity=0.351 Sum_probs=81.4
Q ss_pred CCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
..+.+|||||||+|..+..++++. +..+++++|+++.+++.++++... ..++++++.+|..... .+.++||+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-----~~~~~~~~~~d~~~~~--~~~~~~D~ 90 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-----LGPNVEFVRGDADGLP--FPDGSFDA 90 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-----CCCceEEEecccccCC--CCCCCceE
Confidence 456799999999999999998865 567999999999999999987322 2357999999976542 23578999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|++...-..... ...+++.+.++|+|||.+++..
T Consensus 91 v~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 91 VRSDRVLQHLED----PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred EEEechhhccCC----HHHHHHHHHHHhcCCcEEEEEe
Confidence 997543211111 3568999999999999998754
No 109
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.14 E-value=2.5e-10 Score=110.29 Aligned_cols=101 Identities=22% Similarity=0.360 Sum_probs=78.3
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.++.+|||||||+|.++..++++.+ .+|+++|+|+++++.+++.... ..+++..+|..+. +++||+|
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~~-------l~v~~~~~D~~~l-----~~~fD~I 232 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCAG-------LPVEIRLQDYRDL-----NGQFDRI 232 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc-------CeEEEEECchhhc-----CCCCCEE
Confidence 4567999999999999999998754 5899999999999999988642 2488888986543 4689999
Q ss_pred EEcC-CCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDS-SDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~-~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++.. ....+. -....+++.+.++|||||.++++.
T Consensus 233 vs~~~~ehvg~---~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGP---KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCCh---HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 8632 222211 113478999999999999999874
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.14 E-value=2.7e-10 Score=101.14 Aligned_cols=99 Identities=20% Similarity=0.288 Sum_probs=77.5
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
....+|||||||+|..+..+++.. .+|+++|+++.+++.+++++... + -.+++++.+|+.+.+. ..++||+|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~--~--~~~v~~~~~d~~~~~~--~~~~fD~I 148 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL--G--LHNVSVRHGDGWKGWP--AYAPFDRI 148 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC--C--CCceEEEECCcccCCC--cCCCcCEE
Confidence 356799999999999998877764 47999999999999999988764 2 2369999999765432 24789999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+++...+ .+.+.+.+.|+|||++++..
T Consensus 149 ~~~~~~~----------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 149 LVTAAAP----------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEccCch----------hhhHHHHHhcCCCcEEEEEE
Confidence 9875422 23456788999999999864
No 111
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.13 E-value=1e-10 Score=108.71 Aligned_cols=117 Identities=22% Similarity=0.363 Sum_probs=81.7
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.++++|||+|||+|.++...++. +..+|+++|+||..++.|+++...+ +..+ ++.+. ...+. ..++||+|
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N--~~~~-~~~v~--~~~~~----~~~~~dlv 229 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELN--GVED-RIEVS--LSEDL----VEGKFDLV 229 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHT--T-TT-CEEES--CTSCT----CCS-EEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHc--CCCe-eEEEE--Eeccc----ccccCCEE
Confidence 45679999999999999999988 4679999999999999999998776 4444 66553 11111 24889999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
+.+..... .......+.++|+|||.+++.. ... +....+.+.+++-|
T Consensus 230 vANI~~~v-------L~~l~~~~~~~l~~~G~lIlSG---Il~-~~~~~v~~a~~~g~ 276 (295)
T PF06325_consen 230 VANILADV-------LLELAPDIASLLKPGGYLILSG---ILE-EQEDEVIEAYKQGF 276 (295)
T ss_dssp EEES-HHH-------HHHHHHHCHHHEEEEEEEEEEE---EEG-GGHHHHHHHHHTTE
T ss_pred EECCCHHH-------HHHHHHHHHHhhCCCCEEEEcc---ccH-HHHHHHHHHHHCCC
Confidence 98765321 2356677789999999999864 222 22345555555545
No 112
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.13 E-value=2.9e-10 Score=104.95 Aligned_cols=96 Identities=21% Similarity=0.330 Sum_probs=74.3
Q ss_pred CCceeeEeeccccHHHHHHHhcCC---CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSS---VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~---~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
...+|||||||+|..+..+++..+ ..+++++|+++.+++.|++.. +++++.++|+.+.. .++++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~lp--~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHRLP--FADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeecccCC--CcCCcee
Confidence 456899999999999999887533 237999999999999998764 35788999977642 2367899
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+|++... ..+++++.++|||||.+++....
T Consensus 154 ~I~~~~~-----------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 154 AIIRIYA-----------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred EEEEecC-----------CCCHHHHHhhccCCCEEEEEeCC
Confidence 9996322 12467889999999999986543
No 113
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.13 E-value=6.1e-10 Score=104.65 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=80.9
Q ss_pred hHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHH---HhccccccCCCCCCCeEEEE
Q 020933 110 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVS---KQFFPDVAVGFEDPRVTLHI 186 (319)
Q Consensus 110 ~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a---k~~~~~~~~~~~~~~v~v~~ 186 (319)
..|...+.++.. ..+++|||||||+|..+..++... ...|+++|+++.++..+ ++++. ...++.+..
T Consensus 108 ~~~~~~l~~l~~---~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~------~~~~v~~~~ 177 (314)
T TIGR00452 108 IKWDRVLPHLSP---LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLD------NDKRAILEP 177 (314)
T ss_pred HHHHHHHHhcCC---CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhc------cCCCeEEEE
Confidence 445556655432 356899999999999998888774 35799999999988653 33322 235788888
Q ss_pred cChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 187 GDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 187 ~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
.|..+... ..+||+|++...-..... -..+++.++++|||||.|++..
T Consensus 178 ~~ie~lp~---~~~FD~V~s~gvL~H~~d----p~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 178 LGIEQLHE---LYAFDTVFSMGVLYHRKS----PLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CCHHHCCC---CCCcCEEEEcchhhccCC----HHHHHHHHHHhcCCCCEEEEEE
Confidence 88665421 358999997543211111 2468999999999999999763
No 114
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.12 E-value=1.3e-09 Score=98.32 Aligned_cols=173 Identities=13% Similarity=0.177 Sum_probs=111.8
Q ss_pred eCCCccEEEEEecCCee-EEEEcCeEeecccchhHHHHHHH-hccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEE
Q 020933 78 KSDYQNVMVFQSSTYGK-VLILDGVIQLTERDECAYQEMIT-HLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDI 155 (319)
Q Consensus 78 ~s~yq~i~v~~~~~~g~-~L~ldg~~q~~~~de~~Y~e~l~-~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~ 155 (319)
+-|+|+| ..+..||. .|..--.+.+..+..-.+-+++. .+.-..+..+..+||+|||+|+++..+++..+...|++
T Consensus 100 r~PlQYI--lg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~A 177 (328)
T KOG2904|consen 100 RMPLQYI--LGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTA 177 (328)
T ss_pred cCChhhe--eccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEE
Confidence 5678888 44455554 34444445566665555555442 22223445567899999999999999998767889999
Q ss_pred EECChHHHHHHHhccccccCCCCCCCeEEEEcCh----HHHHHhCCCCCccEEEEcCCCCCC-------Ccccc------
Q 020933 156 CEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG----VAFLKAVPEGTYDAVIVDSSDPIG-------PAQEL------ 218 (319)
Q Consensus 156 VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~----~~~l~~~~~~~fDvIi~D~~~~~~-------~~~~l------ 218 (319)
||.++..+.+|.++.... .+. .++.+++-+. ..-.. ...+++|+|+++++.-.. +.-..
T Consensus 178 iD~S~~Ai~La~eN~qr~--~l~-g~i~v~~~~me~d~~~~~~-l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lA 253 (328)
T KOG2904|consen 178 IDVSKAAIKLAKENAQRL--KLS-GRIEVIHNIMESDASDEHP-LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLA 253 (328)
T ss_pred EeccHHHHHHHHHHHHHH--hhc-CceEEEecccccccccccc-cccCceeEEecCCCcccccchhhcCchheecCchhh
Confidence 999999999999997765 223 4777775432 22211 125899999987753210 10011
Q ss_pred ---------chHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHH
Q 020933 219 ---------FEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVA 256 (319)
Q Consensus 219 ---------~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~ 256 (319)
....++..+.|+|+|||.+.++....-.+....+.++.
T Consensus 254 LdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~ 300 (328)
T KOG2904|consen 254 LDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMI 300 (328)
T ss_pred hccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHH
Confidence 12356778899999999999986533334444444443
No 115
>PLN02672 methionine S-methyltransferase
Probab=99.12 E-value=1.8e-09 Score=114.80 Aligned_cols=151 Identities=15% Similarity=0.071 Sum_probs=103.2
Q ss_pred cCCeeEEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhc
Q 020933 90 STYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQF 169 (319)
Q Consensus 90 ~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~ 169 (319)
.++|..+.++..+...+++....-+.+...+.. ..++.+|||||||+|.++..+++..+..+|+++|+|+++++.|+++
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDS-IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHHHHHHHhcccc-cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 346777888877777777654443333321100 0124689999999999999999876667999999999999999999
Q ss_pred cccccCC------------CCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCC-C----------------------C
Q 020933 170 FPDVAVG------------FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPI-G----------------------P 214 (319)
Q Consensus 170 ~~~~~~~------------~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~-~----------------------~ 214 (319)
...+... ....|++++++|..+.+... ..+||+||++++.-. . +
T Consensus 162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~-~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN-NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHcCcccccccccccccccccccEEEEECchhhhcccc-CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 7653100 01147999999988776422 247999999876310 0 0
Q ss_pred ccccch-----------HHHHHHHHHhcCCCcEEEEecC
Q 020933 215 AQELFE-----------KPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 215 ~~~l~~-----------~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
...|+. +.+++.+.++|+|||.+++..+
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG 279 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMG 279 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 011211 4566677789999999999864
No 116
>PTZ00146 fibrillarin; Provisional
Probab=99.11 E-value=4.3e-09 Score=97.31 Aligned_cols=154 Identities=16% Similarity=0.103 Sum_probs=96.0
Q ss_pred ccccCCCCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHH-hC
Q 020933 119 LPLCSIPNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK-AV 196 (319)
Q Consensus 119 l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~-~~ 196 (319)
+..+...+..+|||||||+|..+..+++.. +..+|++||+++.+.+...+.... .+++.++++|+..-.. ..
T Consensus 125 ~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------r~NI~~I~~Da~~p~~y~~ 198 (293)
T PTZ00146 125 VANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------RPNIVPIIEDARYPQKYRM 198 (293)
T ss_pred cceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCCEEEECCccChhhhhc
Confidence 333334556799999999999999999864 346899999998755333332221 1478999999864211 11
Q ss_pred CCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec--CCcccC---hHHHHHHHHHHHhh-cCCceeEeE
Q 020933 197 PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA--ESIWLH---MHIIEDIVANCRQI-FKGSVNYAW 270 (319)
Q Consensus 197 ~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~--~~~~~~---~~~~~~~~~~l~~~-F~~~v~~~~ 270 (319)
..+++|+|++|...++. ...++..+.+.|||||.|++.. .+.... .+.+.+.++.+++. |. .+..
T Consensus 199 ~~~~vDvV~~Dva~pdq------~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~-~~e~-- 269 (293)
T PTZ00146 199 LVPMVDVIFADVAQPDQ------ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLK-PKEQ-- 269 (293)
T ss_pred ccCCCCEEEEeCCCcch------HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCc-eEEE--
Confidence 24579999999864331 2345667899999999998742 222221 13345545777776 84 2222
Q ss_pred EeecccCCCee-EEEEcC
Q 020933 271 TTVPTYPRTFL-PSCSAV 287 (319)
Q Consensus 271 ~~vP~~~~g~~-~~~S~~ 287 (319)
..++.|..... +++-.+
T Consensus 270 v~L~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 270 LTLEPFERDHAVVIGVYR 287 (293)
T ss_pred EecCCccCCcEEEEEEEc
Confidence 24444554444 444433
No 117
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.11 E-value=9e-10 Score=83.78 Aligned_cols=103 Identities=18% Similarity=0.307 Sum_probs=79.3
Q ss_pred eeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcC
Q 020933 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDS 208 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~ 208 (319)
+|||+|||.|..+..+++. +..+++++|+++..++.+++..... ...+++++.+|..++... ..++||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPE-ADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccc-cCCceEEEEEcc
Confidence 5899999999999999883 4679999999999999998532211 346899999998887642 257899999876
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 209 SDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 209 ~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
..... .-....+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 54321 112467899999999999999874
No 118
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.11 E-value=7.8e-10 Score=108.44 Aligned_cols=118 Identities=14% Similarity=0.228 Sum_probs=85.5
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..+.+|||+|||.|+.+..+++..+..+|+++|+++.+++.+++++... +.. .++.+..+|..........++||.|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~--g~~-~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL--GLT-IKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc--CCC-eEEEEeccccccccccccccccCEE
Confidence 3567999999999999999998655578999999999999999998765 322 2344466776543211124689999
Q ss_pred EEcCCCCC-CC----ccc-------------cchHHHHHHHHHhcCCCcEEEEecCCcc
Q 020933 205 IVDSSDPI-GP----AQE-------------LFEKPFFESVAKALRPGGVVSTQAESIW 245 (319)
Q Consensus 205 i~D~~~~~-~~----~~~-------------l~~~~f~~~~~~~LkpgG~lv~~~~~~~ 245 (319)
++|++... +. +.- -...++++.+.++|||||.++..+++..
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99976421 11 110 0135789999999999999999887653
No 119
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.11 E-value=4.9e-10 Score=99.21 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=73.8
Q ss_pred CCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.+++.+|||||||+|..+..+++..+..++++||+|+.+++.|+++++ +++++++|+.+. .++++||+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---------~~~~~~~d~~~~---~~~~sfD~ 108 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---------NINIIQGSLFDP---FKDNFFDL 108 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---------CCcEEEeeccCC---CCCCCEEE
Confidence 346779999999999999999887556789999999999999998653 467888887762 23679999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
|++...-....+. ....+++.+.++++ +.+++
T Consensus 109 V~~~~vL~hl~p~--~~~~~l~el~r~~~--~~v~i 140 (204)
T TIGR03587 109 VLTKGVLIHINPD--NLPTAYRELYRCSN--RYILI 140 (204)
T ss_pred EEECChhhhCCHH--HHHHHHHHHHhhcC--cEEEE
Confidence 9975543211111 13467888888874 44444
No 120
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.10 E-value=7.8e-10 Score=104.55 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=81.6
Q ss_pred hHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcCh
Q 020933 110 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG 189 (319)
Q Consensus 110 ~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~ 189 (319)
..|...+.+++.. .+++|||||||+|..+..+++..+ ..|+++|+++.++..++..-... + .+.+++++.+|+
T Consensus 109 ~k~~~l~~~l~~l---~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~--~-~~~~i~~~~~d~ 181 (322)
T PRK15068 109 WKWDRVLPHLSPL---KGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLL--G-NDQRAHLLPLGI 181 (322)
T ss_pred hHHHHHHHhhCCC---CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhc--C-CCCCeEEEeCCH
Confidence 4455555565322 468999999999999999988753 57999999999886433211100 0 135899999997
Q ss_pred HHHHHhCCCCCccEEEEcCCC-CCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 190 VAFLKAVPEGTYDAVIVDSSD-PIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 190 ~~~l~~~~~~~fDvIi~D~~~-~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
.+... .++||+|++...- +... ...+++.+++.|+|||.+++.
T Consensus 182 e~lp~---~~~FD~V~s~~vl~H~~d-----p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 182 EQLPA---LKAFDTVFSMGVLYHRRS-----PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred HHCCC---cCCcCEEEECChhhccCC-----HHHHHHHHHHhcCCCcEEEEE
Confidence 76521 5789999974321 1111 347899999999999999875
No 121
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=1e-09 Score=108.21 Aligned_cols=114 Identities=22% Similarity=0.309 Sum_probs=87.6
Q ss_pred CCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
..+.+|||+|||+|+.+..++++. +..+|+++|+++.+++.+++++... +. .+++++++|+..+. ++++||+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~--~~v~~~~~Da~~~~---~~~~fD~ 321 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--GI--TIIETIEGDARSFS---PEEQPDA 321 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--CC--CeEEEEeCcccccc---cCCCCCE
Confidence 345799999999999998888753 3458999999999999999998765 32 36999999998764 2568999
Q ss_pred EEEcCCCC-CCC----cc---cc----------chHHHHHHHHHhcCCCcEEEEecCCcc
Q 020933 204 VIVDSSDP-IGP----AQ---EL----------FEKPFFESVAKALRPGGVVSTQAESIW 245 (319)
Q Consensus 204 Ii~D~~~~-~~~----~~---~l----------~~~~f~~~~~~~LkpgG~lv~~~~~~~ 245 (319)
|++|++.. .+. +. .+ ....+++.+.+.|||||+++..+++..
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99997642 111 00 00 124689999999999999999887754
No 122
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3.1e-10 Score=104.98 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=76.8
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
++++|||+|||+|.++...++.. ..+|.++|+||..++.|+++...+.. . ..++.-..+..... ..++||+|+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v--~-~~~~~~~~~~~~~~---~~~~~DvIV 234 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGV--E-LLVQAKGFLLLEVP---ENGPFDVIV 234 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCC--c-hhhhcccccchhhc---ccCcccEEE
Confidence 78899999999999999999884 67899999999999999999876521 1 12233333333332 246999999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
.+.-... -..+...++++|||||.+++..
T Consensus 235 ANILA~v-------l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 235 ANILAEV-------LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred ehhhHHH-------HHHHHHHHHHHcCCCceEEEEe
Confidence 8763211 2367888999999999999864
No 123
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.10 E-value=1.2e-09 Score=95.51 Aligned_cols=107 Identities=12% Similarity=0.057 Sum_probs=82.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCC-C-CCccE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP-E-GTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~-~-~~fDv 203 (319)
...+|||++||+|.++.+++.+. ..+|++||+|+..++.+++++... ++. .+++++.+|+.+++.... . ..||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~--~~~-~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALL--KSG-EQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHh--CCc-ccEEEEehhHHHHHHHhhccCCCceE
Confidence 45799999999999999999885 468999999999999999998765 232 379999999988875431 2 34899
Q ss_pred EEEcCCCCCCCccccchHHHHHHHH--HhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVA--KALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~--~~LkpgG~lv~~~ 241 (319)
|+.|++..... ..+.++.+. ..|+++|++++..
T Consensus 125 v~~DPPy~~~~-----~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 125 IYLDPPFFNGA-----LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEECcCCCCCc-----HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 99888764321 344565554 4799999999864
No 124
>PHA03412 putative methyltransferase; Provisional
Probab=99.10 E-value=5.7e-10 Score=100.01 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=74.9
Q ss_pred CCceeeEeeccccHHHHHHHhcC---CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHS---SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
.+.+|||+|||+|.++..+++.. +..+|++||+|+.+++.|++++ +++.++++|+..+. . +++||
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~--~-~~~FD 116 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE--F-DTLFD 116 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc--c-cCCcc
Confidence 35799999999999999988742 3468999999999999999764 25789999987643 2 46899
Q ss_pred EEEEcCCCCCCCc--------cccchHHHHHHHHHhcCCCcEEEE
Q 020933 203 AVIVDSSDPIGPA--------QELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 203 vIi~D~~~~~~~~--------~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
+||++++...... ..+....+++.+.+++++|+. ++
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 9999887532111 113345688888886666665 54
No 125
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.10 E-value=4.9e-10 Score=105.04 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=80.0
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.+..+|||||||+|.++..++++.|..+++++|+ |.+++.+++++... +. ..|++++.+|+.+. .. ..+|+|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--gl-~~rv~~~~~d~~~~--~~--~~~D~v 219 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--GV-ADRMRGIAVDIYKE--SY--PEADAV 219 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC--Cc-cceEEEEecCccCC--CC--CCCCEE
Confidence 3557999999999999999999877789999998 78999999887654 33 34899999997653 12 347998
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
++...-+..... ....+++.++++|+|||.+++.
T Consensus 220 ~~~~~lh~~~~~--~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 220 LFCRILYSANEQ--LSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EeEhhhhcCChH--HHHHHHHHHHHhcCCCCEEEEE
Confidence 754322211111 1246899999999999999876
No 126
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=1.3e-09 Score=102.76 Aligned_cols=101 Identities=24% Similarity=0.278 Sum_probs=78.3
Q ss_pred CCCceeeEeeccccHHHHHHHhcCC-CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.+..+|||||||+|.++..+++..+ ..+|+++|+++.+++.|++++... + ..++.++.+|+.+.+.. .+.||+
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~--g--~~nV~~i~gD~~~~~~~--~~~fD~ 152 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL--G--IENVIFVCGDGYYGVPE--FAPYDV 152 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc--C--CCcEEEEeCChhhcccc--cCCccE
Confidence 3567999999999999999988653 247999999999999999987654 2 24799999998776542 357999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+++...+ .....+.+.|+|||.+++..
T Consensus 153 Ii~~~g~~----------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 153 IFVTVGVD----------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEECCchH----------HhHHHHHHhcCCCCEEEEEe
Confidence 99874321 23445678999999988754
No 127
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=1.4e-09 Score=106.96 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=87.9
Q ss_pred CCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC--CCCCc
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~--~~~~f 201 (319)
.++.+|||+|||.|+.+..+++.. +..+|+++|+++.+++.+++++... ++ .+++++++|+..+.... ..++|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--g~--~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--GL--KSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--CC--CeEEEEeCChhhcccccccccccC
Confidence 356799999999999999998763 3468999999999999999998765 33 36999999998764211 14689
Q ss_pred cEEEEcCCCCC-CC----ccc---c----------chHHHHHHHHHhcCCCcEEEEecCCc
Q 020933 202 DAVIVDSSDPI-GP----AQE---L----------FEKPFFESVAKALRPGGVVSTQAESI 244 (319)
Q Consensus 202 DvIi~D~~~~~-~~----~~~---l----------~~~~f~~~~~~~LkpgG~lv~~~~~~ 244 (319)
|.|++|++... +. +.. . ...++++.+.+.|||||.++..+++.
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99999986421 11 100 0 13578999999999999999877653
No 128
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.09 E-value=1e-09 Score=94.14 Aligned_cols=100 Identities=22% Similarity=0.277 Sum_probs=76.8
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
...+|||||||+|.++.+++++ ..++++||+|+.+++.+++++.. .++++++.+|+.++.. ++..||.|+
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~--~~~~~d~vi 82 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL--PKLQPYKVV 82 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc--cccCCCEEE
Confidence 4568999999999999999988 36899999999999999998753 3589999999988743 234699999
Q ss_pred EcCCCCCCCccccchHHHHHHHHH--hcCCCcEEEEecC
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAK--ALRPGGVVSTQAE 242 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~--~LkpgG~lv~~~~ 242 (319)
+|++... ..+.+..+.+ .+.++|++++|-+
T Consensus 83 ~n~Py~~-------~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 83 GNLPYNI-------STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred ECCCccc-------HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 8865432 1244444443 2458899998853
No 129
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.09 E-value=4.9e-10 Score=95.51 Aligned_cols=111 Identities=23% Similarity=0.428 Sum_probs=79.1
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+..+|||||||.|.++..|++..-....++||.++..+++|+.-.... ++.+ .+++.+.|...- . ...++||+|+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~--~~~n-~I~f~q~DI~~~-~-~~~~qfdlvl 141 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD--GFSN-EIRFQQLDITDP-D-FLSGQFDLVL 141 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc--CCCc-ceeEEEeeccCC-c-ccccceeEEe
Confidence 445999999999999999998633345999999999999988654432 3443 599999997763 1 1246788776
Q ss_pred E----cCC--CCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 206 V----DSS--DPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 206 ~----D~~--~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
- |+- .|..+..++ .-++..+.+.|+|||+|++.+++
T Consensus 142 DKGT~DAisLs~d~~~~r~--~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRL--VVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred ecCceeeeecCCCCcccce--eeehhhHhhccCCCcEEEEEecC
Confidence 3 211 122222222 34678889999999999998776
No 130
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.08 E-value=7e-10 Score=99.32 Aligned_cols=106 Identities=20% Similarity=0.304 Sum_probs=81.8
Q ss_pred CCceeeEeeccccHHHHHHHhcCC-CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
+..+|||||||+|..+..+++..+ ..+++++|+++.+++.+++++... +. ..+++++.+|..+... +.++||+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~--~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL--GL-SGNVEFVQGDAEALPF--PDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc--cc-ccCeEEEecccccCCC--CCCCccEE
Confidence 457999999999999999988754 579999999999999999987642 11 3578999999876532 25789999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
++...-.... ....+++.+.++|+|||.+++.
T Consensus 126 ~~~~~l~~~~----~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 126 TIAFGLRNVP----DIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred EEecccccCC----CHHHHHHHHHHhccCCcEEEEE
Confidence 8643322111 1357899999999999988764
No 131
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.08 E-value=4.2e-10 Score=97.96 Aligned_cols=109 Identities=18% Similarity=0.353 Sum_probs=81.9
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC--CCCCccE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~--~~~~fDv 203 (319)
...+||||-+|+|.++.+.+.+. ..+|+.||.|+..++..++++... +.. .+++++..|+..++... ...+||+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l--~~~-~~~~v~~~d~~~~l~~~~~~~~~fDi 117 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKL--GLE-DKIRVIKGDAFKFLLKLAKKGEKFDI 117 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH--T-G-GGEEEEESSHHHHHHHHHHCTS-EEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHh--CCC-cceeeeccCHHHHHHhhcccCCCceE
Confidence 56799999999999999999884 689999999999999999998876 222 37999999998888553 3689999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHH--HhcCCCcEEEEecC
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVA--KALRPGGVVSTQAE 242 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~--~~LkpgG~lv~~~~ 242 (319)
|++|++..... ...+.++.+. ..|+++|++++...
T Consensus 118 IflDPPY~~~~----~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 118 IFLDPPYAKGL----YYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EEE--STTSCH----HHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred EEECCCcccch----HHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 99997654332 1245677776 79999999998753
No 132
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.07 E-value=4.2e-10 Score=98.22 Aligned_cols=103 Identities=16% Similarity=0.240 Sum_probs=75.2
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
++.++||||||.|..+..|++.+ -.|+++|+++..++.+++..... +-.++....|..++. . ++.||+|+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~~--~-~~~yD~I~ 99 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDFD--F-PEEYDFIV 99 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCBS----TTTEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhcc--c-cCCcCEEE
Confidence 57899999999999999999985 57999999999999887765432 235889999976653 2 46899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+.......++. ....+++.+++.++|||++++.
T Consensus 100 st~v~~fL~~~--~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMFLQRE--LRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGGS-GG--GHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeccCCHH--HHHHHHHHHHhhcCCcEEEEEE
Confidence 64332222222 1357899999999999998874
No 133
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=3e-10 Score=98.63 Aligned_cols=104 Identities=17% Similarity=0.318 Sum_probs=78.5
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeE-EEEcChHHHHHhCCCCCccEEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVT-LHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~-v~~~D~~~~l~~~~~~~fDvIi 205 (319)
...||++|||+|..-...-- .+..+||++|.++.|-+.+.+.+.+. ..+++. ++++|+.+..+ .++.+||+|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~----k~~~~~~fvva~ge~l~~-l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEK----KPLQVERFVVADGENLPQ-LADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhc----cCcceEEEEeechhcCcc-cccCCeeeEE
Confidence 35789999999987655432 26789999999999999999988765 446777 99999988653 3489999998
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+..-- +... ...+.++++.++|+|||++++-
T Consensus 151 ~TlvL--CSve--~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 151 CTLVL--CSVE--DPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEE--eccC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 63211 1100 1346799999999999999874
No 134
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.07 E-value=4.7e-10 Score=111.35 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=79.0
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+.++|||||||+|.++..++++. .+|++||+++.+++.+++.... .++++++++|+.......++++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~------~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGH------YKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhcc------CCceEEEEecccccccCCCCCCEEEEe
Confidence 45699999999999999999874 5899999999999988764321 357999999986432123467899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+...-...+.. ...++++.++++|||||++++.
T Consensus 109 ~~~~l~~l~~~--~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMYLSDK--EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hhhhHHhCCHH--HHHHHHHHHHHhcCCCeEEEEE
Confidence 76543222211 1257899999999999999875
No 135
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.07 E-value=8.8e-10 Score=98.21 Aligned_cols=111 Identities=18% Similarity=0.147 Sum_probs=75.9
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhcccccc--------CCCCCCCeEEEEcChHHHHHhC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA--------VGFEDPRVTLHIGDGVAFLKAV 196 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~--------~~~~~~~v~v~~~D~~~~l~~~ 196 (319)
+.+.+||++|||.|..+..++++. .+|++||+++..++.+.+...... ......+++++++|..++-...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 355799999999999999999884 689999999999997543211100 0012357999999987764221
Q ss_pred CCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 197 PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 197 ~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
.++||.|+-...-...+ .. ....+++.+.++|||||++++.
T Consensus 111 -~~~fD~i~D~~~~~~l~-~~-~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 111 -LGPVDAVYDRAALIALP-EE-MRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred -CCCcCEEEechhhccCC-HH-HHHHHHHHHHHHcCCCCeEEEE
Confidence 35799987432211111 11 1356899999999999975443
No 136
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.07 E-value=1e-09 Score=97.27 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=81.5
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCC-ceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSV-EKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
..+.+|||+|||+|..+..+++..+. .+++++|+++.+++.+++++. . ..+++++.+|+.+... ++++||+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-----~~~i~~~~~d~~~~~~--~~~~~D~ 109 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-----PLNIEFIQADAEALPF--EDNSFDA 109 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-----CCCceEEecchhcCCC--CCCcEEE
Confidence 35679999999999999999887554 589999999999999998875 1 3578999999877542 2568999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|++........ ....+++.+.+.|+|||.+++..
T Consensus 110 i~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 110 VTIAFGLRNVT----DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEEeeeeCCcc----cHHHHHHHHHHHcCCCcEEEEEE
Confidence 98743221111 13478999999999999998753
No 137
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.04 E-value=1.6e-09 Score=101.48 Aligned_cols=112 Identities=16% Similarity=0.112 Sum_probs=77.4
Q ss_pred CCCceeeEeeccccHHHHHHHhcCC-CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCC---CC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPE---GT 200 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~---~~ 200 (319)
+.+.+|||+|||+|..++.+++..+ ..+++++|+|++|++.+++.+... +..-++..+++|..+.+.-... ..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~---~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD---YPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh---CCCceEEEEEEcccchhhhhcccccCC
Confidence 3557899999999999999988743 468999999999999998876532 1223567789998765422111 12
Q ss_pred ccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 201 fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
..+++++.+........ ...+++.++++|+|||.|++..
T Consensus 139 ~~~~~~gs~~~~~~~~e--~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 139 RLGFFPGSTIGNFTPEE--AVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred eEEEEecccccCCCHHH--HHHHHHHHHHhcCCCCEEEEec
Confidence 23344444332222211 3579999999999999999755
No 138
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=2.4e-09 Score=95.14 Aligned_cols=116 Identities=20% Similarity=0.319 Sum_probs=81.8
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCC-----------------------------
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVG----------------------------- 176 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~----------------------------- 176 (319)
.++.+|||||-.|.++..++++++...|.+||||+..|+.|++++.....-
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 478999999999999999999988889999999999999999987654210
Q ss_pred ---------CCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCcc--ccchHHHHHHHHHhcCCCcEEEEecCCcc
Q 020933 177 ---------FEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQ--ELFEKPFFESVAKALRPGGVVSTQAESIW 245 (319)
Q Consensus 177 ---------~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~--~l~~~~f~~~~~~~LkpgG~lv~~~~~~~ 245 (319)
+...|..+...| |+.. ....||+|++-+-.-|.+.. ..--..||+.+.++|.|||+||+.- -+|
T Consensus 138 t~~~p~n~~f~~~n~vle~~d---fl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP-QpW 212 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDD---FLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP-QPW 212 (288)
T ss_pred cccCCcchhcccccEEEecch---hhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC-Cch
Confidence 001122222333 4422 36789999985544332211 1124679999999999999999852 245
Q ss_pred c
Q 020933 246 L 246 (319)
Q Consensus 246 ~ 246 (319)
.
T Consensus 213 k 213 (288)
T KOG2899|consen 213 K 213 (288)
T ss_pred H
Confidence 4
No 139
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.02 E-value=2.3e-09 Score=95.54 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=75.7
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
...+|||||||+|.++..+++.. .+|+++|+|+++++.|++++... +. ..++++.++|+... .++||+|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~~~--~~-~~~i~~~~~d~~~~-----~~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQGR--DV-AGNVEFEVNDLLSL-----CGEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc--CC-CCceEEEECChhhC-----CCCcCEEE
Confidence 56799999999999999998763 58999999999999999987643 11 24799999996553 37899998
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+-..-...+... ...+++.+.+++++++++.+.
T Consensus 125 ~~~~l~~~~~~~--~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 125 CMDVLIHYPASD--MAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred EhhHHHhCCHHH--HHHHHHHHHHHhCCCEEEEEC
Confidence 622211111111 245788899989877776653
No 140
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.01 E-value=2.4e-09 Score=96.26 Aligned_cols=104 Identities=18% Similarity=0.255 Sum_probs=80.7
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+..+|||||||+|.++..+++.. .+++++|+++.+++.+++++... ..+++++..|..++.... .++||+|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~fD~Ii 119 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALES-----GLKIDYRQTTAEELAAEH-PGQFDVVT 119 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHc-----CCceEEEecCHHHhhhhc-CCCccEEE
Confidence 46799999999999999888863 57999999999999999887543 236788889988776433 57899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+...-.... ....+++.+.+.|+|||.+++..
T Consensus 120 ~~~~l~~~~----~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 120 CMEMLEHVP----DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EhhHhhccC----CHHHHHHHHHHHcCCCcEEEEEe
Confidence 743221111 13468999999999999998864
No 141
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.01 E-value=6.3e-09 Score=102.53 Aligned_cols=102 Identities=19% Similarity=0.183 Sum_probs=79.5
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh--CCCCCccE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA--VPEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~--~~~~~fDv 203 (319)
...+|||+|||+|.++..+++.. .+|+++|+|+.+++.|++++..+ + -.+++++.+|+.+++.. ..+++||+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~--~--~~~v~~~~~d~~~~l~~~~~~~~~fD~ 370 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRN--G--LDNVTFYHANLEEDFTDQPWALGGFDK 370 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHc--C--CCceEEEEeChHHhhhhhhhhcCCCCE
Confidence 45799999999999999999874 68999999999999999987654 2 24699999999887642 12467999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|++|++... ..+.++.+.+ ++|++++.+.+
T Consensus 371 Vi~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 371 VLLDPPRAG-------AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred EEECcCCcC-------hHHHHHHHHh-cCCCeEEEEEe
Confidence 999876432 1245666655 68999888765
No 142
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.6e-09 Score=91.87 Aligned_cols=100 Identities=19% Similarity=0.286 Sum_probs=78.1
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
..+.|+|+|||||.++..++... ..+|++||+|++.+++++++..+. ..+++++++|+.++ ..++|.+|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~-----~~~~dtvi 113 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF-----RGKFDTVI 113 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc-----CCccceEE
Confidence 56789999999999999988774 579999999999999999998763 34899999998776 67899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+|++.... ..--..+|++...+.- +.++.++
T Consensus 114 mNPPFG~~--~rhaDr~Fl~~Ale~s--~vVYsiH 144 (198)
T COG2263 114 MNPPFGSQ--RRHADRPFLLKALEIS--DVVYSIH 144 (198)
T ss_pred ECCCCccc--cccCCHHHHHHHHHhh--heEEEee
Confidence 88765332 2224677888777654 3455443
No 143
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.00 E-value=4.5e-09 Score=105.09 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=99.8
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+...+||||||.|..+..+++..|...+.+||+....+..+.+..... +-.|+.++.+|+..+....+++++|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~----~l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ----NITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc----CCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 456899999999999999999888899999999988777666554332 2357899999987666556678899999
Q ss_pred EcCCCCCC----CccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHH
Q 020933 206 VDSSDPIG----PAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCR 259 (319)
Q Consensus 206 ~D~~~~~~----~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~ 259 (319)
+..++||. ...++...+|++.++++|+|||.+.+.+.. .+++...++.+.
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~----~~y~~~~~~~~~ 476 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI----ENYFYEAIELIQ 476 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC----HHHHHHHHHHHH
Confidence 99999983 456799999999999999999999987654 344444444444
No 144
>PRK05785 hypothetical protein; Provisional
Probab=99.00 E-value=4.5e-09 Score=94.52 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=69.0
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+|||||||+|.++..+++.. ..+|+++|++++|++.|++.. ..+++|+.+.. .++++||+|+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~lp--~~d~sfD~v~ 115 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------------DKVVGSFEALP--FRDKSFDVVM 115 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------------ceEEechhhCC--CCCCCEEEEE
Confidence 46799999999999999998874 368999999999999998631 24577876542 3478999999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCc
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGG 235 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG 235 (319)
+...-.... .....++++.|+|||.+
T Consensus 116 ~~~~l~~~~----d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 116 SSFALHASD----NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ecChhhccC----CHHHHHHHHHHHhcCce
Confidence 754322111 13578999999999953
No 145
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.99 E-value=1.6e-09 Score=90.83 Aligned_cols=98 Identities=22% Similarity=0.403 Sum_probs=69.7
Q ss_pred CCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.+...+|||||||+|.++..+.+.+ .+++++|+++.+++. . ++.....+...... ++++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~------------~~~~~~~~~~~~~~--~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--R------------NVVFDNFDAQDPPF--PDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--T------------TSEEEEEECHTHHC--HSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--h------------hhhhhhhhhhhhhc--cccchhh
Confidence 3567899999999999999997774 389999999999987 1 11122222122221 2689999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
|++...-...+ ....+++.+.++|||||++++....
T Consensus 82 i~~~~~l~~~~----d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 82 IICNDVLEHLP----DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp EEEESSGGGSS----HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred HhhHHHHhhcc----cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 99753322222 1457999999999999999987643
No 146
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.99 E-value=2.9e-09 Score=94.88 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=80.5
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+|||||||+|.++..+++.. .+++++|+++.+++.+++++... ...++++..+|+.++.... .++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~~~~-~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKD----PLLKIEYRCTSVEDLAEKG-AKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHc----CCCceEEEeCCHHHhhcCC-CCCccEEE
Confidence 46799999999999999988764 46999999999999999887643 1126899999988876432 47899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+...-.... ....+++.+.+.|+|||.+++..
T Consensus 118 ~~~~l~~~~----~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 118 CMEVLEHVP----DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred ehhHHHhCC----CHHHHHHHHHHhcCCCcEEEEEe
Confidence 743211111 13478999999999999988764
No 147
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.98 E-value=7.5e-09 Score=97.57 Aligned_cols=103 Identities=18% Similarity=0.265 Sum_probs=78.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++... +. .+++++++|+.++.... .++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~--~l--~~v~~~~~D~~~~~~~~-~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAEL--GL--TNVQFQALDSTQFATAQ-GEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHc--CC--CceEEEEcCHHHHHHhc-CCCCeEEE
Confidence 45799999999999999999863 68999999999999999988665 22 47999999999887543 45799999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
+|++.. + ...+..+.+ ..++|++++.+.+.
T Consensus 246 ~dPPr~-G-----~~~~~~~~l-~~~~~~~ivyvsc~ 275 (315)
T PRK03522 246 VNPPRR-G-----IGKELCDYL-SQMAPRFILYSSCN 275 (315)
T ss_pred ECCCCC-C-----ccHHHHHHH-HHcCCCeEEEEECC
Confidence 996632 1 123344444 34788887777553
No 148
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.97 E-value=1.6e-08 Score=97.66 Aligned_cols=117 Identities=14% Similarity=0.185 Sum_probs=87.1
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+|||+|||+|.++..++... .+|++||+|+..++.+++++... +. .+++++.+|+.+++... .++||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~--~~--~~~~~~~~d~~~~~~~~-~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQML--GL--DNLSFAALDSAKFATAQ-MSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHc--CC--CcEEEEECCHHHHHHhc-CCCCCEEE
Confidence 34699999999999999998653 68999999999999999998665 22 37999999999887543 35699999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
+|++.. +. ..++++.+. .++|++++.+.+. +..+.+-++.+ ..|
T Consensus 306 ~DPPr~-G~-----~~~~l~~l~-~~~p~~ivyvsc~-----p~TlaRDl~~L-~gy 349 (374)
T TIGR02085 306 VNPPRR-GI-----GKELCDYLS-QMAPKFILYSSCN-----AQTMAKDIAEL-SGY 349 (374)
T ss_pred ECCCCC-CC-----cHHHHHHHH-hcCCCeEEEEEeC-----HHHHHHHHHHh-cCc
Confidence 997742 21 345666665 4799998887642 34444444455 445
No 149
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.96 E-value=3.3e-09 Score=94.90 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=75.2
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccc--c------CCCCCCCeEEEEcChHHHHHhC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV--A------VGFEDPRVTLHIGDGVAFLKAV 196 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~--~------~~~~~~~v~v~~~D~~~~l~~~ 196 (319)
++..+||++|||.|..+.+|+++. .+|++||+++..++.+.+..... . ..+...+++++++|..++....
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 345799999999999999999874 68999999999999764321110 0 0112468999999988774321
Q ss_pred CCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEE
Q 020933 197 PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (319)
Q Consensus 197 ~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv 238 (319)
...||.|+--..-...++. ....+++.+.++|+|||+++
T Consensus 114 -~~~fd~v~D~~~~~~l~~~--~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 114 -LADVDAVYDRAALIALPEE--MRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred -CCCeeEEEehHhHhhCCHH--HHHHHHHHHHHHcCCCCeEE
Confidence 3579998832211111111 14578999999999998633
No 150
>PRK06202 hypothetical protein; Provisional
Probab=98.96 E-value=3.6e-09 Score=95.24 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=72.0
Q ss_pred CCCceeeEeeccccHHHHHHHhc----CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRH----SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGT 200 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~ 200 (319)
.++.+|||||||+|.++..+++. .+..+|+++|+++.+++.|++.... +++++.+.|+..... ++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~l~~--~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDELVA--EGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEecccccc--cCCC
Confidence 45679999999999999888753 3345899999999999999987542 345666665443321 2578
Q ss_pred ccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 201 fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
||+|++...-+..+... ...+++.+.++++ |.++++
T Consensus 130 fD~V~~~~~lhh~~d~~--~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAE--VVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred ccEEEECCeeecCChHH--HHHHHHHHHHhcC--eeEEEe
Confidence 99999865432222111 2468999999998 444443
No 151
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.96 E-value=2.3e-08 Score=98.18 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=80.5
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC--CCCCcc
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~--~~~~fD 202 (319)
.+..+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++... + -.+++++.+|+.+++... ...+||
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~--~--~~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELN--G--IANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHh--C--CCceEEEeCCHHHHHHHHHhcCCCCC
Confidence 345799999999999999999874 58999999999999999998755 2 248999999998876532 135799
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+|++|++.. +. ..++++.+.+ |+|++++.+.
T Consensus 365 ~vi~dPPr~-G~-----~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 365 VLLLDPPRK-GC-----AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred EEEECcCCC-CC-----CHHHHHHHHh-cCCCEEEEEc
Confidence 999997742 21 3467776664 8999877764
No 152
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.93 E-value=2.7e-09 Score=94.80 Aligned_cols=108 Identities=16% Similarity=0.270 Sum_probs=81.2
Q ss_pred CCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
++..+.++|+|||+|..++.++.++ ++|+++|+++.|+++++++.+.. +.+...++...|..+++- .+++.|+
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~---y~~t~~~ms~~~~v~L~g--~e~SVDl 103 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVT---YCHTPSTMSSDEMVDLLG--GEESVDL 103 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcc---cccCCccccccccccccC--CCcceee
Confidence 4455589999999999899999996 78999999999999999987653 223344555566666553 2689999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCc-EEEEecCC
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGG-VVSTQAES 243 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG-~lv~~~~~ 243 (319)
|++--.-++.. ..+||+.++|+||++| +++++..+
T Consensus 104 I~~Aqa~HWFd-----le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 104 ITAAQAVHWFD-----LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ehhhhhHHhhc-----hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 99643333333 5689999999999887 77776543
No 153
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.93 E-value=2.5e-09 Score=98.40 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=74.9
Q ss_pred CCceeeEeeccccH----HHHHHHhcCC-----CceEEEEECChHHHHHHHhccccc-c-CCC-----------------
Q 020933 126 NPKKVLVIGGGDGG----VLREVSRHSS-----VEKIDICEIDKMVVDVSKQFFPDV-A-VGF----------------- 177 (319)
Q Consensus 126 ~~~~VL~IG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~ak~~~~~~-~-~~~----------------- 177 (319)
.+.+||++|||+|. ++..+++..+ ..+|+++|+|+.+++.|++..-.. . .+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4555555422 368999999999999999854110 0 000
Q ss_pred ----CCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 178 ----EDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 178 ----~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
-..++++.++|..+... +.++||+|++-..-...... ....+++.++++|+|||+|++-
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~crnvl~yf~~~--~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP--PLGDFDLIFCRNVLIYFDEP--TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC--ccCCCCEEEechhHHhCCHH--HHHHHHHHHHHHhCCCeEEEEE
Confidence 01378899999776421 25789999973221111111 1347899999999999999984
No 154
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.91 E-value=1.5e-08 Score=90.60 Aligned_cols=102 Identities=19% Similarity=0.305 Sum_probs=71.7
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..+.+|||||||+|.++..+++.. .+|+++|+++.+++.+++++... +.. .+++++.+|. .. . .++||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~--~~~-~~i~~~~~d~-~~---~-~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEA--GLA-GNITFEVGDL-ES---L-LGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc--CCc-cCcEEEEcCc-hh---c-cCCcCEE
Confidence 456799999999999999998874 46999999999999999987653 222 4799999993 22 2 5789999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEE
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv 238 (319)
++...-...+... ....++.+.+.+++++++.
T Consensus 132 ~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 132 VCLDVLIHYPQED--AARMLAHLASLTRGSLIFT 163 (230)
T ss_pred EEcchhhcCCHHH--HHHHHHHHHhhcCCeEEEE
Confidence 9643221111111 2356777777766545444
No 155
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.89 E-value=8.7e-09 Score=89.29 Aligned_cols=99 Identities=22% Similarity=0.194 Sum_probs=72.6
Q ss_pred CCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.+...+|||||||+|.++..|.+.. ..+..+||+|++-+..|.++ .+.++++|+.+.+..+++++||.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccE
Confidence 3466899999999999999988764 46899999999988877753 57899999999998888999999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
||+.-+-.... ...+.++++.|+ |...++..
T Consensus 79 VIlsqtLQ~~~----~P~~vL~EmlRV---gr~~IVsF 109 (193)
T PF07021_consen 79 VILSQTLQAVR----RPDEVLEEMLRV---GRRAIVSF 109 (193)
T ss_pred EehHhHHHhHh----HHHHHHHHHHHh---cCeEEEEe
Confidence 99643321110 123455655554 54555544
No 156
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.89 E-value=2.5e-08 Score=86.33 Aligned_cols=111 Identities=18% Similarity=0.279 Sum_probs=85.4
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCC-CCccEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPE-GTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~-~~fDvI 204 (319)
...++||+-+|+|+++.+.+.+. ..+++.||.|.......+++.... ++ ..+.+++..|+..+++.... +.||+|
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l--~~-~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKAL--GL-EGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHh--CC-ccceEEEeecHHHHHHhcCCCCcccEE
Confidence 56799999999999999999884 689999999999999999998765 21 36899999999988877622 249999
Q ss_pred EEcCCCCCCCccccchHHHHHH--HHHhcCCCcEEEEecCC
Q 020933 205 IVDSSDPIGPAQELFEKPFFES--VAKALRPGGVVSTQAES 243 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~--~~~~LkpgG~lv~~~~~ 243 (319)
++|++...+... ...-+.. -...|+|+|.+++....
T Consensus 119 flDPPy~~~l~~---~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 119 FLDPPYAKGLLD---KELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EeCCCCccchhh---HHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 999877533211 1112222 24679999999997543
No 157
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.88 E-value=1.4e-08 Score=98.00 Aligned_cols=100 Identities=24% Similarity=0.335 Sum_probs=82.5
Q ss_pred ceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEc
Q 020933 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVD 207 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D 207 (319)
.+|||++||+|..+..+++..+..+|+++|+|+..++.+++++..+ + -.+++++++|+..++.. .++||+|++|
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N--~--~~~~~v~~~Da~~~l~~--~~~fD~V~lD 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN--G--LENEKVFNKDANALLHE--ERKFDVVDID 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--C--CCceEEEhhhHHHHHhh--cCCCCEEEEC
Confidence 5899999999999999987655678999999999999999998765 2 23577999999988753 3579999999
Q ss_pred CCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 208 SSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 208 ~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++ +. ..+|++...+.+++||++.+.+
T Consensus 133 P~---Gs-----~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PF---GS-----PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CC---CC-----cHHHHHHHHHHhcCCCEEEEEe
Confidence 75 22 2468888788899999998875
No 158
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.87 E-value=2.8e-08 Score=93.53 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=71.4
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccC-CCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV-GFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~-~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
++.+|||||||+|.++..+++.. .+|+++|+++.+++.+++++..... .....++++..+|.... +++||+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCEE
Confidence 45799999999999999999873 5899999999999999998754210 01134688999996432 4789999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
++...-...+... ...+++.+.+ +.++|+++..
T Consensus 217 v~~~vL~H~p~~~--~~~ll~~l~~-l~~g~liIs~ 249 (315)
T PLN02585 217 TCLDVLIHYPQDK--ADGMIAHLAS-LAEKRLIISF 249 (315)
T ss_pred EEcCEEEecCHHH--HHHHHHHHHh-hcCCEEEEEe
Confidence 8632211111111 2245666664 5677776643
No 159
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.84 E-value=7e-09 Score=91.50 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=82.1
Q ss_pred cCeEeecccchhHHHHHHHhccccC---CCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccC
Q 020933 99 DGVIQLTERDECAYQEMITHLPLCS---IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV 175 (319)
Q Consensus 99 dg~~q~~~~de~~Y~e~l~~l~l~~---~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~ 175 (319)
+|--+++..|-..-...|..+.... .....++||+|+|.|.++..++... ..+|++||..+..++.|++++...
T Consensus 25 GG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~-- 101 (218)
T PF05891_consen 25 GGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD-- 101 (218)
T ss_dssp TT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG--
T ss_pred cCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc--
Confidence 3434455555444455565543331 1245799999999999999876543 479999999999999999988652
Q ss_pred CCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 176 GFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 176 ~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
.....++++.-..+|... +.+||+|.+--.-..-... .-.+||+.|++.|+|+|++++-
T Consensus 102 --~~~v~~~~~~gLQ~f~P~--~~~YDlIW~QW~lghLTD~--dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 102 --NPRVGEFYCVGLQDFTPE--EGKYDLIWIQWCLGHLTDE--DLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp --GCCEEEEEES-GGG------TT-EEEEEEES-GGGS-HH--HHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCCcceEEecCHhhccCC--CCcEeEEEehHhhccCCHH--HHHHHHHHHHHhCcCCcEEEEE
Confidence 223467777777777532 4799999963221111111 1347999999999999999975
No 160
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.84 E-value=1.3e-07 Score=90.82 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=76.1
Q ss_pred ceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCC----------
Q 020933 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP---------- 197 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~---------- 197 (319)
.+|||++||+|.++..+++.. .+|++||+++.+++.+++++..+ +. .+++++.+|+.++++...
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~--~~--~~v~~~~~d~~~~l~~~~~~~~~~~~~~ 281 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAAN--GI--DNVQIIRMSAEEFTQAMNGVREFNRLKG 281 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHh--CC--CcEEEEECCHHHHHHHHhhccccccccc
Confidence 579999999999999888774 58999999999999999987655 22 379999999999875421
Q ss_pred ----CCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 198 ----EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 198 ----~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
..+||+|++|++. .+. ..+.++.+.+ +++++.+.+
T Consensus 282 ~~~~~~~~D~v~lDPPR-~G~-----~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 282 IDLKSYNFSTIFVDPPR-AGL-----DDETLKLVQA---YERILYISC 320 (362)
T ss_pred ccccCCCCCEEEECCCC-CCC-----cHHHHHHHHc---cCCEEEEEe
Confidence 1259999999874 221 3455666654 678777754
No 161
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.83 E-value=3.6e-08 Score=87.27 Aligned_cols=121 Identities=22% Similarity=0.338 Sum_probs=93.7
Q ss_pred ccchhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHh-cCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEE
Q 020933 106 ERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSR-HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTL 184 (319)
Q Consensus 106 ~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v 184 (319)
.+++..+-.|+.. .-+++++||||.=+|..+..++. .++..+|+++|+|+...+++.+..... + -+.++++
T Consensus 58 ~~d~g~fl~~li~-----~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a--g-v~~KI~~ 129 (237)
T KOG1663|consen 58 GPDKGQFLQMLIR-----LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA--G-VDHKITF 129 (237)
T ss_pred ChHHHHHHHHHHH-----HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc--c-ccceeee
Confidence 4455555555544 23789999999999999888766 466789999999999999997765543 2 2468999
Q ss_pred EEcChHHHHHhC----CCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 185 HIGDGVAFLKAV----PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 185 ~~~D~~~~l~~~----~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+++++.+.+.+. ..++||.+++|.....+ ..+++++.++||+||++++.-
T Consensus 130 i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY-------~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 130 IEGPALESLDELLADGESGTFDFAFVDADKDNY-------SNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred eecchhhhHHHHHhcCCCCceeEEEEccchHHH-------HHHHHHHHhhcccccEEEEec
Confidence 999998877553 35789999999764322 278999999999999998753
No 162
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.82 E-value=2.1e-07 Score=89.14 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=82.9
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC---------C
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV---------P 197 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~---------~ 197 (319)
+.+|||+|||+|.++..+++.. .+|++||+++.+++.+++++... +. .+++++.+|+.+++... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAAN--NI--DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc--CC--CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 3479999999999999888774 58999999999999999998655 22 47999999999988631 0
Q ss_pred -----CCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 198 -----EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 198 -----~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
...||+|++|++. .+. ..++++.+.+ |++++.+.++ +..+.+-++.+.+.|
T Consensus 272 ~~~~~~~~~d~v~lDPPR-~G~-----~~~~l~~l~~---~~~ivYvsC~-----p~tlaRDl~~L~~~Y 327 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPR-AGL-----DPDTCKLVQA---YERILYISCN-----PETLKANLEQLSETH 327 (353)
T ss_pred ccccccCCCCEEEECCCC-CCC-----cHHHHHHHHc---CCcEEEEEcC-----HHHHHHHHHHHhcCc
Confidence 1248999999874 232 3355666544 7888887542 234444444443335
No 163
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.79 E-value=1.7e-09 Score=95.37 Aligned_cols=101 Identities=21% Similarity=0.363 Sum_probs=76.8
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~ 206 (319)
-+++||||||||..+..+-.. ..++++||||..|++.|.+.=- -+ ++.++|+..|+....+++||+|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~------YD---~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL------YD---TLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc------hH---HHHHHHHHHHhhhccCCcccchhh
Confidence 579999999999988887655 3679999999999999987521 12 466788888987555789999984
Q ss_pred -cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 207 -DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 207 -D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
|...-.+. ...+|-.+...|+|||.|.++++.
T Consensus 195 aDVl~YlG~-----Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 195 ADVLPYLGA-----LEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred hhHHHhhcc-----hhhHHHHHHHhcCCCceEEEEecc
Confidence 22222222 235788899999999999998754
No 164
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.78 E-value=4.6e-08 Score=86.19 Aligned_cols=100 Identities=22% Similarity=0.380 Sum_probs=75.6
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.+...|||+.||-|.++..++++.....|.++|++|..++..+++...+ ..+ .++.++++|+++++. ...||.|
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN--kv~-~~i~~~~~D~~~~~~---~~~~drv 173 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN--KVE-NRIEVINGDAREFLP---EGKFDRV 173 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT--T-T-TTEEEEES-GGG------TT-EEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc--CCC-CeEEEEcCCHHHhcC---ccccCEE
Confidence 4678999999999999999999766789999999999999999998766 334 479999999999986 5789999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEE
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv 238 (319)
+++.+.. ..+|+..+.+++++||++.
T Consensus 174 im~lp~~--------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPES--------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TSS--------GGGGHHHHHHHEEEEEEEE
T ss_pred EECChHH--------HHHHHHHHHHHhcCCcEEE
Confidence 9887642 3468999999999999875
No 165
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.77 E-value=7.2e-08 Score=81.29 Aligned_cols=108 Identities=21% Similarity=0.247 Sum_probs=83.6
Q ss_pred CCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH---HHhCCCCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF---LKAVPEGT 200 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~---l~~~~~~~ 200 (319)
..+..|||+|.|||.+++.++++. ..+.++++|.|++......+.++ .+++++||+... +.+.++..
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---------~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---------GVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---------CccccccchhhHHHHHhhcCCCe
Confidence 356789999999999999998863 45789999999999999888775 356999998753 44445678
Q ss_pred ccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 201 fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
||.||+..+--..+... +.++++.+...|..||.++.-+..
T Consensus 118 ~D~viS~lPll~~P~~~--~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 118 FDSVISGLPLLNFPMHR--RIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeeEEeccccccCcHHH--HHHHHHHHHHhcCCCCeEEEEEec
Confidence 99999876543222211 557899999999999999876544
No 166
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.76 E-value=4.8e-08 Score=93.94 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=85.5
Q ss_pred CceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+.+|||+.+|+|..+..+++. .+..+|+++|+|+..++.+++++..+ .-.+++++++|+..++... ..+||+|+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N----~~~~~~v~~~Da~~~l~~~-~~~fDvId 119 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN----SVENIEVPNEDAANVLRYR-NRKFHVID 119 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEchhHHHHHHHh-CCCCCEEE
Confidence 358999999999999999886 35689999999999999999998765 2236899999999998764 56899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|++. . ..+|++.+.+.++++|++.+.+
T Consensus 120 lDPfG---s-----~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 120 IDPFG---T-----PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred eCCCC---C-----cHHHHHHHHHhcccCCEEEEEe
Confidence 99753 1 1369999999999999998873
No 167
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.75 E-value=3.1e-08 Score=89.62 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=74.9
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.+.++|||||||.|..+..+++..|..+++..|+ |.+++.+++ .+|++++.+|.+ ... +. +|+|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~-P~-~D~~ 162 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPL-PV-ADVY 162 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCC-SS-ESEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhh-cc-ccce
Confidence 3567999999999999999999888899999999 999999888 259999999966 333 34 9999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCC--cEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPG--GVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~Lkpg--G~lv~~~ 241 (319)
++--.-+..+... ...+++.+++.|+|| |.|++.-
T Consensus 163 ~l~~vLh~~~d~~--~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 163 LLRHVLHDWSDED--CVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEESSGGGS-HHH--HHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eeehhhhhcchHH--HHHHHHHHHHHhCCCCCCeEEEEe
Confidence 9743332222221 457899999999999 9888763
No 168
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.73 E-value=7.2e-08 Score=86.42 Aligned_cols=112 Identities=8% Similarity=-0.065 Sum_probs=78.1
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccc-------c-CCCCCCCeEEEEcChHHHHHh-
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV-------A-VGFEDPRVTLHIGDGVAFLKA- 195 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~-------~-~~~~~~~v~v~~~D~~~~l~~- 195 (319)
+++.+||+.|||.|.-+.+|+.+. -+|++||+++..++.+.+..... . ..+...+++++++|.+++-..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 355799999999999999999984 57999999999999876632110 0 012345899999998886321
Q ss_pred CCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 196 VPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 196 ~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
...++||+|+--..-..-++ + ....+.+.+.++|+|||.+++-
T Consensus 120 ~~~~~fD~VyDra~~~Alpp-~-~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPN-D-LRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cccCCcCeeeeehhHhcCCH-H-HHHHHHHHHHHHhCCCcEEEEE
Confidence 11368999874222211111 1 2467999999999999987654
No 169
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.72 E-value=8.1e-08 Score=84.41 Aligned_cols=125 Identities=20% Similarity=0.142 Sum_probs=84.2
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.-|||||||+|..+..+.... -..++|||++.|+++|.+. .. .-.++.+|.-+-+.. ++++||.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~--e~-------egdlil~DMG~Glpf-rpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVER--EL-------EGDLILCDMGEGLPF-RPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHh--hh-------hcCeeeeecCCCCCC-CCCccceEE
Confidence 36789999999998887776553 5789999999999999872 22 134666676555543 379999988
Q ss_pred EcCCCC-------CCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHH-HHhhcCC
Q 020933 206 VDSSDP-------IGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVAN-CRQIFKG 264 (319)
Q Consensus 206 ~D~~~~-------~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~-l~~~F~~ 264 (319)
+-+.-. .......-...||..++.+|++|+..|+|.... ..+.++.+... ++.-|.+
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe--n~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE--NEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc--chHHHHHHHHHHHhhccCC
Confidence 622211 111111123468999999999999999985321 23455555554 5566754
No 170
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.72 E-value=3e-07 Score=90.88 Aligned_cols=115 Identities=23% Similarity=0.302 Sum_probs=89.4
Q ss_pred CCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
..+.+|||+|+|.|+-+.+++... +...|+++|+++.-++..++++... .-.++.+.+.|+..+.... .+.||.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~----G~~nv~v~~~D~~~~~~~~-~~~fD~ 186 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC----GVSNVALTHFDGRVFGAAL-PETFDA 186 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEeCchhhhhhhc-hhhcCe
Confidence 456799999999999999988753 3458999999999999999998776 3357899999998765443 467999
Q ss_pred EEEcCCCCC-CC----ccc-------------cchHHHHHHHHHhcCCCcEEEEecCCc
Q 020933 204 VIVDSSDPI-GP----AQE-------------LFEKPFFESVAKALRPGGVVSTQAESI 244 (319)
Q Consensus 204 Ii~D~~~~~-~~----~~~-------------l~~~~f~~~~~~~LkpgG~lv~~~~~~ 244 (319)
|++|++..- +. +.. -...++++.+.+.|||||+||..+++.
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 999998632 11 100 113578899999999999999888764
No 171
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.69 E-value=1.6e-07 Score=86.70 Aligned_cols=114 Identities=22% Similarity=0.306 Sum_probs=78.3
Q ss_pred hHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHH---HHhccccccCCCCCCCeEEEE
Q 020933 110 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDV---SKQFFPDVAVGFEDPRVTLHI 186 (319)
Q Consensus 110 ~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~---ak~~~~~~~~~~~~~~v~v~~ 186 (319)
..|++...|++-+ .+++|||||||+|..+..+++.. ...|+++|.++...-. ++++++. +.++ +..
T Consensus 102 ~KW~rl~p~l~~L---~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~lg~------~~~~-~~l 170 (315)
T PF08003_consen 102 WKWDRLLPHLPDL---KGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFLGQ------DPPV-FEL 170 (315)
T ss_pred chHHHHHhhhCCc---CCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHhCC------CccE-EEc
Confidence 5678888887533 67899999999999999999884 5789999998876543 3333321 1222 233
Q ss_pred cChHHHHHhCCCCCccEEEEcCC-CCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 187 GDGVAFLKAVPEGTYDAVIVDSS-DPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 187 ~D~~~~l~~~~~~~fDvIi~D~~-~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
..+.+.+.. .++||+|++-.- .+... -.+.++.+++.|+|||.+++.+
T Consensus 171 plgvE~Lp~--~~~FDtVF~MGVLYHrr~-----Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 171 PLGVEDLPN--LGAFDTVFSMGVLYHRRS-----PLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred Ccchhhccc--cCCcCEEEEeeehhccCC-----HHHHHHHHHHhhCCCCEEEEEE
Confidence 345555543 478999996322 11111 2367999999999999999764
No 172
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.68 E-value=2.1e-07 Score=86.85 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=63.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
...+|||||||.|.++..+++.. .+|+++|+|+.+++.+++.+... +. .++++++.+|+.++. ...||+|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~--~~-~~~v~ii~~Dal~~~----~~~~d~Vv 106 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNS--PL-ASKLEVIEGDALKTE----FPYFDVCV 106 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhc--CC-CCcEEEEECCHhhhc----ccccCEEE
Confidence 55799999999999999998874 57999999999999999987643 11 358999999987752 35789999
Q ss_pred EcCCCCCC
Q 020933 206 VDSSDPIG 213 (319)
Q Consensus 206 ~D~~~~~~ 213 (319)
.+++..+.
T Consensus 107 aNlPY~Is 114 (294)
T PTZ00338 107 ANVPYQIS 114 (294)
T ss_pred ecCCcccC
Confidence 87765443
No 173
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.67 E-value=7.3e-08 Score=86.19 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=75.8
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHh-cccccc----C---CCCCCCeEEEEcChHHHHHhC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQ-FFPDVA----V---GFEDPRVTLHIGDGVAFLKAV 196 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~-~~~~~~----~---~~~~~~v~v~~~D~~~~l~~~ 196 (319)
+.+.+||+.|||.|.-+.+|++++ -+|++||+++..++.+.+ +..... . .....+++++++|.+++-...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 456799999999999999999984 689999999999998843 221110 0 023468999999998865432
Q ss_pred CCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEE
Q 020933 197 PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVV 237 (319)
Q Consensus 197 ~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~l 237 (319)
.++||+|+=-.+-...++ -...++.+.+.++|+|||.+
T Consensus 114 -~g~fD~iyDr~~l~Alpp--~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 114 -VGKFDLIYDRTFLCALPP--EMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp -HHSEEEEEECSSTTTS-G--GGHHHHHHHHHHCEEEEEEE
T ss_pred -cCCceEEEEecccccCCH--HHHHHHHHHHHHHhCCCCcE
Confidence 358999984322211222 22568999999999999993
No 174
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.65 E-value=8.3e-08 Score=82.75 Aligned_cols=110 Identities=18% Similarity=0.254 Sum_probs=67.2
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHH--HhCCCCCcc
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFL--KAVPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l--~~~~~~~fD 202 (319)
.++++|||||||+|..+..+++..+..+|++.|.++ +++..+.+...+.. ....++++..-|=-+.+ ......+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence 367899999999999999998885568999999999 99999998766421 12457777776521111 111246899
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+|+. +|-.+.. -....+++.+.++|+++|.+++.
T Consensus 122 ~Ila--sDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 122 VILA--SDVLYDE--ELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp EEEE--ES--S-G--GGHHHHHHHHHHHBTT-TTEEEE
T ss_pred EEEE--ecccchH--HHHHHHHHHHHHHhCCCCEEEEE
Confidence 9994 3333322 12467899999999999986654
No 175
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.65 E-value=3.7e-07 Score=83.67 Aligned_cols=74 Identities=19% Similarity=0.277 Sum_probs=61.7
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+..+|||||||+|.++..+++.. .+|+++|+|+.+++.+++.+.. .++++++++|+.++. -..||.|+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~----~~~~d~Vv 96 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD----LPEFNKVV 96 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC----chhceEEE
Confidence 56799999999999999999884 5899999999999999988753 358999999987642 24589999
Q ss_pred EcCCCC
Q 020933 206 VDSSDP 211 (319)
Q Consensus 206 ~D~~~~ 211 (319)
++.+..
T Consensus 97 ~NlPy~ 102 (258)
T PRK14896 97 SNLPYQ 102 (258)
T ss_pred EcCCcc
Confidence 877653
No 176
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=7.4e-08 Score=84.04 Aligned_cols=104 Identities=19% Similarity=0.278 Sum_probs=81.5
Q ss_pred CCceeeEeeccccHHHHHHHhc--CCCceEEEEECChHHHHHHHhcccccc------CCCCCCCeEEEEcChHHHHHhCC
Q 020933 126 NPKKVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVA------VGFEDPRVTLHIGDGVAFLKAVP 197 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~ak~~~~~~~------~~~~~~~v~v~~~D~~~~l~~~~ 197 (319)
++.+.|++|+|+|.++..+++. .+....++||.-+++++.+++++.... ..++..++.++++|++..-..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-- 159 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-- 159 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc--
Confidence 5679999999999999888764 233344999999999999999876542 235678999999999986543
Q ss_pred CCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 198 EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
..+||.|.+.+..+ +.-+.+...|++||.+++-.
T Consensus 160 ~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEee
Confidence 57999999986553 33567777899999998853
No 177
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.65 E-value=1e-07 Score=83.41 Aligned_cols=92 Identities=23% Similarity=0.209 Sum_probs=65.5
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+|||||||+|.++..+++.. ..+++++|+++++++.+++. +++++++|+.+.+...++++||+|+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-----------~~~~~~~d~~~~l~~~~~~sfD~Vi 80 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-----------GVNVIQGDLDEGLEAFPDKSFDYVI 80 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-----------CCeEEEEEhhhcccccCCCCcCEEE
Confidence 45699999999999999887664 35789999999999988642 4678888876644223357899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCC
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRP 233 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~Lkp 233 (319)
+...-.... ....+++++.+.+++
T Consensus 81 ~~~~l~~~~----d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 81 LSQTLQATR----NPEEILDEMLRVGRH 104 (194)
T ss_pred EhhHhHcCc----CHHHHHHHHHHhCCe
Confidence 754322111 134577777776654
No 178
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.63 E-value=2.1e-07 Score=87.54 Aligned_cols=119 Identities=21% Similarity=0.230 Sum_probs=89.5
Q ss_pred HHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEc-ChHH
Q 020933 113 QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG-DGVA 191 (319)
Q Consensus 113 ~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~-D~~~ 191 (319)
.+.|+.++ ....+..|||=-||||+++.++.-.+ .+++++|+|..|++-++.++... .-....++.. |+..
T Consensus 186 AR~mVNLa--~v~~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~y----~i~~~~~~~~~Da~~ 257 (347)
T COG1041 186 ARAMVNLA--RVKRGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLEYY----GIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHh--ccccCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhhh----CcCceeEEEeccccc
Confidence 45555543 23456799999999999999988764 68999999999999999999865 2245656666 8776
Q ss_pred HHHhCCCCCccEEEEcCCCCCCCc------cccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 192 FLKAVPEGTYDAVIVDSSDPIGPA------QELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 192 ~l~~~~~~~fDvIi~D~~~~~~~~------~~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
.. .+++++|.|++|++...... ..| ..++|+.+.++|++||.+++.+.
T Consensus 258 lp--l~~~~vdaIatDPPYGrst~~~~~~l~~L-y~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LP--LRDNSVDAIATDPPYGRSTKIKGEGLDEL-YEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CC--CCCCccceEEecCCCCcccccccccHHHH-HHHHHHHHHHHhhcCcEEEEecC
Confidence 53 33557999999987644321 123 34789999999999999998753
No 179
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.62 E-value=1.1e-07 Score=93.61 Aligned_cols=105 Identities=18% Similarity=0.247 Sum_probs=73.0
Q ss_pred CceeeEeeccccHHHHHHHhc----CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 127 PKKVLVIGGGDGGVLREVSRH----SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
.+.|||||||+|.++...++. ....+|.+||.++..+...++..... +++ .+|+++.+|.+++-. +++.|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w~-~~V~vi~~d~r~v~l---pekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GWG-DKVTVIHGDMREVEL---PEKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TTT-TTEEEEES-TTTSCH---SS-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CCC-CeEEEEeCcccCCCC---CCcee
Confidence 467999999999998776554 34579999999998887766543322 343 489999999998743 56999
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
+||+..-...+..+ ...+.+....+.|||||+++=
T Consensus 261 IIVSElLGsfg~nE--l~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 261 IIVSELLGSFGDNE--LSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp EEEE---BTTBTTT--SHHHHHHHGGGGEEEEEEEES
T ss_pred EEEEeccCCccccc--cCHHHHHHHHhhcCCCCEEeC
Confidence 99986554333222 345778888999999999873
No 180
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.61 E-value=5.8e-07 Score=84.68 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=61.9
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE-cChHHHHHhC--CCCCcc
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAV--PEGTYD 202 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~-~D~~~~l~~~--~~~~fD 202 (319)
...+|||||||+|++...++...+..+++++|||+..++.|++++..+. ++. .+++++. .|....+... +.++||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np-~l~-~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP-GLN-GAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc-CCc-CcEEEEEccchhhhhhcccccCCceE
Confidence 4579999999999888887765456789999999999999999987541 122 4788864 4443333221 256899
Q ss_pred EEEEcCCCCC
Q 020933 203 AVIVDSSDPI 212 (319)
Q Consensus 203 vIi~D~~~~~ 212 (319)
+|+++++...
T Consensus 192 livcNPPf~~ 201 (321)
T PRK11727 192 ATLCNPPFHA 201 (321)
T ss_pred EEEeCCCCcC
Confidence 9999886543
No 181
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.57 E-value=7e-07 Score=80.77 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=67.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+..++||||+|+|.++..++.+. .+|.+.|+|+.|....++. ..+++-.| ++-. . +.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-----------g~~vl~~~--~w~~-~-~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-----------GFTVLDID--DWQQ-T-DFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-----------CCeEEehh--hhhc-c-CCceEEEe
Confidence 45789999999999999998876 6799999999997755542 33444333 3332 2 56899998
Q ss_pred E-cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 206 V-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 206 ~-D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+ +.-|-... -...++.+++.|+|+|++++-
T Consensus 157 cLNvLDRc~~-----P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 157 CLNVLDRCDR-----PLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ehhhhhccCC-----HHHHHHHHHHHhCCCCEEEEE
Confidence 7 33332211 236899999999999998754
No 182
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.55 E-value=1.6e-07 Score=79.90 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=56.0
Q ss_pred eeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCC-ccEEEEc
Q 020933 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGT-YDAVIVD 207 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~-fDvIi~D 207 (319)
.|+|+.||.|+.+.++++.. .+|++||+|+..++.++.+..-. +. ..+++++++|..+.+....... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vY--Gv-~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVY--GV-ADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHT--T--GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHc--CC-CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999985 68999999999999999997655 22 4589999999999886642222 8999976
Q ss_pred CC
Q 020933 208 SS 209 (319)
Q Consensus 208 ~~ 209 (319)
++
T Consensus 77 PP 78 (163)
T PF09445_consen 77 PP 78 (163)
T ss_dssp --
T ss_pred CC
Confidence 64
No 183
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.55 E-value=6e-07 Score=82.97 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=59.7
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..+.+|||||||+|.++..++++. .+|+++|+|+.+++.+++.+. .++++++++|+.++-.. +-.+|.|
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~~~--~~~~~~v 109 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVDLS--ELQPLKV 109 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCCHH--HcCcceE
Confidence 356799999999999999999985 389999999999999998763 25899999998875211 1115889
Q ss_pred EEcCCC
Q 020933 205 IVDSSD 210 (319)
Q Consensus 205 i~D~~~ 210 (319)
+.+++.
T Consensus 110 v~NlPY 115 (272)
T PRK00274 110 VANLPY 115 (272)
T ss_pred EEeCCc
Confidence 977654
No 184
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.1e-06 Score=75.29 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=89.1
Q ss_pred CCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
+++-+|+||||+|.++..+++. .+.....++||+|...+..++-...+ .-++++++.|...-++ .++.|++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-----~~~~~~V~tdl~~~l~---~~~VDvL 114 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-----RVHIDVVRTDLLSGLR---NESVDVL 114 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-----CCccceeehhHHhhhc---cCCccEE
Confidence 4788999999999999998874 45567889999999999888765543 3468899999888876 4899999
Q ss_pred EEcCCCCCCCc-----------------cccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHh
Q 020933 205 IVDSSDPIGPA-----------------QELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (319)
Q Consensus 205 i~D~~~~~~~~-----------------~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 260 (319)
+.+++....+. ..-.+..++..+-..|.|.|++.+... +....+++++.+++
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~----~~N~p~ei~k~l~~ 183 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL----RANKPKEILKILEK 183 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh----hhcCHHHHHHHHhh
Confidence 98765311111 111244678888899999999988642 23334556665543
No 185
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.2e-06 Score=79.85 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=72.3
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCC--CccEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEG--TYDAV 204 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~--~fDvI 204 (319)
...|||||+|.|.++..|++.. .+|++||+|+.+++..++.+.. .++++++++|+.++-. .. .++.|
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d~---~~l~~~~~v 99 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFDF---PSLAQPYKV 99 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCcc---hhhcCCCEE
Confidence 6799999999999999999985 5799999999999999998763 3689999999887632 22 68999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCC-CcEEEEe
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRP-GGVVSTQ 240 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~Lkp-gG~lv~~ 240 (319)
+.+.+..+.. .-.++.+.....+ ..++.+|
T Consensus 100 VaNlPY~Iss------pii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 100 VANLPYNISS------PILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred EEcCCCcccH------HHHHHHHhccCccceEEEEeH
Confidence 9887765542 2234444443333 4455554
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.51 E-value=9.2e-07 Score=80.77 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=59.7
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc--
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD-- 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD-- 202 (319)
.++.+|||||||+|.++..+++.. .+|+++|+|+.+++.+++.+.. .++++++++|+.++.. ..||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~----~~~d~~ 95 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL----PDFPKQ 95 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh----hHcCCc
Confidence 356799999999999999999886 4699999999999999987642 3689999999876532 2466
Q ss_pred -EEEEcCCC
Q 020933 203 -AVIVDSSD 210 (319)
Q Consensus 203 -vIi~D~~~ 210 (319)
+|+.+.+.
T Consensus 96 ~~vvsNlPy 104 (253)
T TIGR00755 96 LKVVSNLPY 104 (253)
T ss_pred ceEEEcCCh
Confidence 88877653
No 187
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.50 E-value=1.1e-06 Score=77.00 Aligned_cols=106 Identities=22% Similarity=0.244 Sum_probs=84.0
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.++.+||.+|.|-|.+...+-+.++..+ +.+|..|.|++..+.+-.. +..+|.++.+-=.+.+...+++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~-----ek~nViil~g~WeDvl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWR-----EKENVIILEGRWEDVLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccc-----cccceEEEecchHhhhccccccCccee
Confidence 4788999999999999999888877665 7899999999999887543 345777777754555555567889999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+-|.+.+... ..++|++.+.++|||+|++..-
T Consensus 174 ~yDTy~e~yE----dl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 174 YYDTYSELYE----DLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred EeechhhHHH----HHHHHHHHHhhhcCCCceEEEe
Confidence 9998754332 1568999999999999999863
No 188
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.50 E-value=2.9e-07 Score=87.22 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=75.0
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCC------CCCCeEEEEcChHHH-HHh-CC
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGF------EDPRVTLHIGDGVAF-LKA-VP 197 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~------~~~~v~v~~~D~~~~-l~~-~~ 197 (319)
++.+|||||||-|+-+.-..+. ....++++||+...|+.|+++........ -.-...++.+|...- +.. .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 5679999999988866666555 46899999999999999998873221100 013567888987632 221 12
Q ss_pred C--CCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 198 E--GTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 198 ~--~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
. .+||+|-+-..-+..-...-..+.+++.+.+.|+|||+|+..+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2 5899998755444332222224569999999999999999865
No 189
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.49 E-value=4.4e-07 Score=78.69 Aligned_cols=111 Identities=21% Similarity=0.236 Sum_probs=76.6
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCce---------EEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEK---------IDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA 195 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~---------v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~ 195 (319)
.....|||--||+|+++.+.+....... +.++|+|+.+++.|++++... +.. ..+.+...|+.++..
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a--g~~-~~i~~~~~D~~~l~~- 102 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA--GVE-DYIDFIQWDARELPL- 102 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT--T-C-GGEEEEE--GGGGGG-
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc--ccC-CceEEEecchhhccc-
Confidence 3457899999999999999766433233 889999999999999998765 333 368999999988752
Q ss_pred CCCCCccEEEEcCCCCCCCcc----ccchHHHHHHHHHhcCCCcEEEEe
Q 020933 196 VPEGTYDAVIVDSSDPIGPAQ----ELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 196 ~~~~~fDvIi~D~~~~~~~~~----~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
.++.+|+||+|++....... .-+...|++.++++|++..++++.
T Consensus 103 -~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 103 -PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp -TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred -ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 25799999999876543211 122346888999999995555554
No 190
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.46 E-value=1.4e-05 Score=75.57 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=102.4
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..+..|||.-+|-|.++..++++... +|.++||||..++..++++..+ +.. .++..++||++++.... +.+|-|
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN--~v~-~~v~~i~gD~rev~~~~--~~aDrI 260 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLN--KVE-GRVEPILGDAREVAPEL--GVADRI 260 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhc--Ccc-ceeeEEeccHHHhhhcc--ccCCEE
Confidence 35789999999999999999998643 4999999999999999998876 333 36999999999997643 789999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccCh--HHHHHHHHHHHhhcCCceeEeEEeecccCCCeeE
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHM--HIIEDIVANCRQIFKGSVNYAWTTVPTYPRTFLP 282 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~--~~~~~~~~~l~~~F~~~v~~~~~~vP~~~~g~~~ 282 (319)
|+..+.. +.+|+....+.+++||++-.....+-... .....+.+...+.-.......+..+-+|.-+.+.
T Consensus 261 im~~p~~--------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~h 332 (341)
T COG2520 261 IMGLPKS--------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYH 332 (341)
T ss_pred EeCCCCc--------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecccCCCeeE
Confidence 9877642 35789999999999999887643221110 0223333333222001223344567777777664
Q ss_pred EE
Q 020933 283 SC 284 (319)
Q Consensus 283 ~~ 284 (319)
+|
T Consensus 333 v~ 334 (341)
T COG2520 333 VV 334 (341)
T ss_pred EE
Confidence 43
No 191
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=4.9e-06 Score=81.52 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=88.7
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCC-CCCccEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP-EGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~-~~~fDvI 204 (319)
...+|||+=||.|.++..+++. ..+|++||++++.++.|+++...+ ...|++++.+|+.++..... ...+|+|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n----~i~N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAAN----GIDNVEFIAGDAEEFTPAWWEGYKPDVV 366 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHc----CCCcEEEEeCCHHHHhhhccccCCCCEE
Confidence 4468999999999999999966 479999999999999999998776 33469999999999987641 3578999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHh
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQ 260 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 260 (319)
|+|++-.-. ..++++.+.+ ++|..++.+.++ +..+.+-++.+.+
T Consensus 367 vvDPPR~G~------~~~~lk~l~~-~~p~~IvYVSCN-----P~TlaRDl~~L~~ 410 (432)
T COG2265 367 VVDPPRAGA------DREVLKQLAK-LKPKRIVYVSCN-----PATLARDLAILAS 410 (432)
T ss_pred EECCCCCCC------CHHHHHHHHh-cCCCcEEEEeCC-----HHHHHHHHHHHHh
Confidence 999875332 3466766665 678888887653 3344444444443
No 192
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.34 E-value=1.5e-06 Score=80.37 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=81.7
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCC--CCCeEEEEcChHHHH-Hh---CCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFE--DPRVTLHIGDGVAFL-KA---VPE 198 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~--~~~v~v~~~D~~~~l-~~---~~~ 198 (319)
+....+|+||||-|+-++-..+. +...++++||...-|+.|+++...+..-+. .-.+.++.+|...-. .. .++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 45678999999999988777766 467899999999999999988765522111 124789999986532 11 124
Q ss_pred CCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 199 GTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 199 ~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
.+||+|-+-..-+..-...--..-+++.+.++|+|||+|+-..++
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 559999864433332211111345789999999999999986543
No 193
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.33 E-value=3e-06 Score=73.23 Aligned_cols=136 Identities=15% Similarity=0.236 Sum_probs=78.0
Q ss_pred HHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChH
Q 020933 112 YQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV 190 (319)
Q Consensus 112 Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~ 190 (319)
-.|++....+....++.+||||||+.|+.+..++++. +..+|++||+.+. . ..+.+..+.+|..
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~---------~~~~~~~i~~d~~ 73 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------D---------PLQNVSFIQGDIT 73 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------G---------S-TTEEBTTGGGE
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc------c---------cccceeeeecccc
Confidence 3556655553333356899999999999999999885 4689999999887 1 0123444444432
Q ss_pred -----HHHHhC---CCCCccEEEEcCCCCCCCcccc-------chHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHH
Q 020933 191 -----AFLKAV---PEGTYDAVIVDSSDPIGPAQEL-------FEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIV 255 (319)
Q Consensus 191 -----~~l~~~---~~~~fDvIi~D~~~~~~~~~~l-------~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 255 (319)
+.+... ..++||+|++|........... .....+..+.+.|+|||.+++-.- ...+. ..++
T Consensus 74 ~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~---~~~~~-~~~~ 149 (181)
T PF01728_consen 74 NPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF---KGPEI-EELI 149 (181)
T ss_dssp EEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES---SSTTS-HHHH
T ss_pred hhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec---cCccH-HHHH
Confidence 222221 1368999999985433211110 112335566788999998887542 12222 3666
Q ss_pred HHHHhhcCCcee
Q 020933 256 ANCRQIFKGSVN 267 (319)
Q Consensus 256 ~~l~~~F~~~v~ 267 (319)
..++..|. .+.
T Consensus 150 ~~l~~~F~-~v~ 160 (181)
T PF01728_consen 150 YLLKRCFS-KVK 160 (181)
T ss_dssp HHHHHHHH-HEE
T ss_pred HHHHhCCe-EEE
Confidence 77777883 443
No 194
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.33 E-value=2.4e-06 Score=86.04 Aligned_cols=127 Identities=16% Similarity=0.215 Sum_probs=82.3
Q ss_pred CCceeeEeeccccHHHHHHHhcCC--------CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHH---
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSS--------VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK--- 194 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~--------~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~--- 194 (319)
...+|||.|||+|.++..++++.+ ...+.++|+|+..+..++..+... ....+++.++|......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~----~~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF----ALLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc----CCCCceeeeccccccccccc
Confidence 356999999999999988876431 257899999999999999887654 22245667666443211
Q ss_pred hCCCCCccEEEEcCCCCCCCc-c------------------------------------------ccchHHHHHHHHHhc
Q 020933 195 AVPEGTYDAVIVDSSDPIGPA-Q------------------------------------------ELFEKPFFESVAKAL 231 (319)
Q Consensus 195 ~~~~~~fDvIi~D~~~~~~~~-~------------------------------------------~l~~~~f~~~~~~~L 231 (319)
....++||+||.+++...... . .++..-|++.+.+.|
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL 186 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIA 186 (524)
T ss_pred ccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhc
Confidence 111358999998876432110 0 011111346788999
Q ss_pred CCCcEEEEecCCcccChHHHHHHHH
Q 020933 232 RPGGVVSTQAESIWLHMHIIEDIVA 256 (319)
Q Consensus 232 kpgG~lv~~~~~~~~~~~~~~~~~~ 256 (319)
++||.+.+-..+.|......+.+-+
T Consensus 187 ~~~G~~~~I~P~s~l~~~~~~~lR~ 211 (524)
T TIGR02987 187 NKNGYVSIISPASWLGDKTGENLRE 211 (524)
T ss_pred CCCCEEEEEEChHHhcCccHHHHHH
Confidence 9999998877665655444333333
No 195
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=6.9e-06 Score=78.73 Aligned_cols=116 Identities=16% Similarity=0.246 Sum_probs=88.5
Q ss_pred CCCceeeEeeccccHHHHHHHhcCC--CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCC-CCc
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSS--VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPE-GTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~-~~f 201 (319)
..+.+|||++++-|+=+.+++.... ...|+++|+|+.-++..++++... .-.++.+++.|++.+...... ++|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl----G~~nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL----GVRNVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc----CCCceEEEecccccccccccccCcC
Confidence 3458999999999999988887643 245699999999999999998876 334688999998876544322 369
Q ss_pred cEEEEcCCCCC-CC----cc-------------ccchHHHHHHHHHhcCCCcEEEEecCCc
Q 020933 202 DAVIVDSSDPI-GP----AQ-------------ELFEKPFFESVAKALRPGGVVSTQAESI 244 (319)
Q Consensus 202 DvIi~D~~~~~-~~----~~-------------~l~~~~f~~~~~~~LkpgG~lv~~~~~~ 244 (319)
|.|++|++... +. +. .-+..++++...+.|||||+|+..+++.
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 99999987532 11 11 0124578999999999999999998775
No 196
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.27 E-value=2.3e-06 Score=80.26 Aligned_cols=116 Identities=22% Similarity=0.229 Sum_probs=74.1
Q ss_pred CCCceeeEeeccccHHHHHHHhc-------CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRH-------SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP 197 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~-------~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~ 197 (319)
....+|||-+||+|+++.++.++ ....++.++|+|+..+.+|+-++... +.......+..+|...-.....
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~--~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH--GIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT--THHCBGCEEEES-TTTSHSCTS
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh--cccccccccccccccccccccc
Confidence 34568999999999999888763 24578999999999999998765432 2223345788999654432111
Q ss_pred CCCccEEEEcCCCCCC--Ccc---------------ccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 198 EGTYDAVIVDSSDPIG--PAQ---------------ELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~--~~~---------------~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
..+||+|+++++.... ... .-....|++.+.+.|++||.+++-..
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 3689999998765322 000 01123588999999999998766543
No 197
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.26 E-value=5.9e-07 Score=70.69 Aligned_cols=98 Identities=23% Similarity=0.304 Sum_probs=46.6
Q ss_pred eEeeccccHHHHHHHhcCC-C--ceEEEEECChH---HHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 131 LVIGGGDGGVLREVSRHSS-V--EKIDICEIDKM---VVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 131 L~IG~G~G~~~~~l~~~~~-~--~~v~~VEid~~---vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
||||+..|..+..+++... . .++++||..+. .-+..++ . ++ ..+++++.+|..+.+...+.++||+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~----~--~~-~~~~~~~~g~s~~~l~~~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK----A--GL-SDRVEFIQGDSPDFLPSLPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS----------------G--GG--BTEEEEES-THHHHHHHHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh----c--CC-CCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence 6899999999988876422 2 37999999994 3333333 1 12 24799999999988876634799999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
++|...... .....++.+.+.|+|||++++.
T Consensus 74 ~iDg~H~~~-----~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHSYE-----AVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES---HH-----HHHHHHHHHGGGEEEEEEEEEE
T ss_pred EECCCCCHH-----HHHHHHHHHHHHcCCCeEEEEe
Confidence 999753211 1345688899999999999974
No 198
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.26 E-value=2.2e-06 Score=72.85 Aligned_cols=81 Identities=15% Similarity=0.047 Sum_probs=58.0
Q ss_pred EEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCC
Q 020933 154 DICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRP 233 (319)
Q Consensus 154 ~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~Lkp 233 (319)
+++|+++.|++.|++.......+ ...+++++++|+.+.. .++++||+|++...-.... ...+++++++++|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~lp--~~~~~fD~v~~~~~l~~~~----d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDLP--FDDCEFDAVTMGYGLRNVV----DRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhCC--CCCCCeeEEEecchhhcCC----CHHHHHHHHHHHcCc
Confidence 48999999999998765432101 1247999999988753 2367899999754322211 145789999999999
Q ss_pred CcEEEEec
Q 020933 234 GGVVSTQA 241 (319)
Q Consensus 234 gG~lv~~~ 241 (319)
||.+++..
T Consensus 74 GG~l~i~d 81 (160)
T PLN02232 74 GSRVSILD 81 (160)
T ss_pred CeEEEEEE
Confidence 99998753
No 199
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.25 E-value=6e-06 Score=76.96 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=63.7
Q ss_pred CCceeeEeeccccHHHHHHHhcCC-CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCC--CCcc
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPE--GTYD 202 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~--~~fD 202 (319)
++..+||.+||.|+.+..+++..+ ..+|+++|.|+++++.+++.+.. ..+++++++|..++....++ .++|
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~l~~~l~~~~~~vD 92 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSNLKEVLAEGLGKVD 92 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHHHHHHHHcCCCccC
Confidence 456999999999999999998753 67899999999999999988743 24899999999988654422 2799
Q ss_pred EEEEcC
Q 020933 203 AVIVDS 208 (319)
Q Consensus 203 vIi~D~ 208 (319)
.|++|+
T Consensus 93 gIl~DL 98 (296)
T PRK00050 93 GILLDL 98 (296)
T ss_pred EEEECC
Confidence 999865
No 200
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.23 E-value=2.6e-06 Score=79.92 Aligned_cols=101 Identities=24% Similarity=0.378 Sum_probs=73.4
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+.+.|||+|||+|.++...++.+ ..+|.+||-+..+ +.|++-+..+ ++++ .++++.+.+.+. ..|.++.|+||
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N--~~~~-ii~vi~gkvEdi--~LP~eKVDiIv 132 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDN--GLED-VITVIKGKVEDI--ELPVEKVDIIV 132 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhc--Cccc-eEEEeecceEEE--ecCccceeEEe
Confidence 57899999999999999999985 6899999997655 8888877655 4443 799999987776 34468999999
Q ss_pred EcCCCCCCCccccchHHHHHHH----HHhcCCCcEEE
Q 020933 206 VDSSDPIGPAQELFEKPFFESV----AKALRPGGVVS 238 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~----~~~LkpgG~lv 238 (319)
+.--... |+....+..+ -+.|+|||.+.
T Consensus 133 SEWMGy~-----Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 133 SEWMGYF-----LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ehhhhHH-----HHHhhhhhhhhhhhhhccCCCceEc
Confidence 6432211 1111222222 36899999886
No 201
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.21 E-value=3.2e-06 Score=72.70 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=83.9
Q ss_pred hHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcCh
Q 020933 110 CAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG 189 (319)
Q Consensus 110 ~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~ 189 (319)
+.|.+++...+ ...+.|||+|+|.++...++. ..+|.++|.||...+.|++++... .+.+++++++|+
T Consensus 22 avF~~ai~~va------~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~----g~~n~evv~gDA 89 (252)
T COG4076 22 AVFTSAIAEVA------EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVP----GDVNWEVVVGDA 89 (252)
T ss_pred HHHHHHHHHHh------hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCC----CCcceEEEeccc
Confidence 45566665532 258999999999988877766 589999999999999999997544 456899999999
Q ss_pred HHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 190 VAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 190 ~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+.|- -+..|+|||..-+..-.... ....++.+.+.||.++.++-|
T Consensus 90 ~~y~----fe~ADvvicEmlDTaLi~E~--qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 90 RDYD----FENADVVICEMLDTALIEEK--QVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred cccc----ccccceeHHHHhhHHhhccc--ccHHHHHHHHHhhcCCccccH
Confidence 9883 25689999865442211111 234677788889999988743
No 202
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.21 E-value=2.3e-05 Score=75.16 Aligned_cols=116 Identities=19% Similarity=0.145 Sum_probs=73.1
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC----------
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV---------- 196 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~---------- 196 (319)
+.+|||+-||.|.++..+++.. .+|++||+++.+++.|++++..+ .-.+++++.+++.++....
T Consensus 197 ~~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N----~i~n~~f~~~~~~~~~~~~~~~r~~~~~~ 270 (352)
T PF05958_consen 197 KGDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLN----GIDNVEFIRGDAEDFAKALAKAREFNRLK 270 (352)
T ss_dssp TTEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHT----T--SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred CCcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHc----CCCcceEEEeeccchhHHHHhhHHHHhhh
Confidence 3489999999999999999875 78999999999999999998766 2358999998876653211
Q ss_pred ----CCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 197 ----PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 197 ----~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
....+|+||+|++-.-. ...+++.+.+ + . .++--+++| ..+.+-++.+.+.|
T Consensus 271 ~~~~~~~~~d~vilDPPR~G~------~~~~~~~~~~-~--~-~ivYvSCnP----~tlaRDl~~L~~~y 326 (352)
T PF05958_consen 271 GIDLKSFKFDAVILDPPRAGL------DEKVIELIKK-L--K-RIVYVSCNP----ATLARDLKILKEGY 326 (352)
T ss_dssp GS-GGCTTESEEEE---TT-S------CHHHHHHHHH-S--S-EEEEEES-H----HHHHHHHHHHHCCE
T ss_pred hhhhhhcCCCEEEEcCCCCCc------hHHHHHHHhc-C--C-eEEEEECCH----HHHHHHHHHHhhcC
Confidence 12368999999875322 3455666543 3 3 444444443 44444445566655
No 203
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.20 E-value=3e-06 Score=75.66 Aligned_cols=108 Identities=20% Similarity=0.324 Sum_probs=74.9
Q ss_pred CCceeeEeeccccHHHHHHHhcCCC--ceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH-HHh-CCCCCc
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSV--EKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF-LKA-VPEGTY 201 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~-l~~-~~~~~f 201 (319)
.+.+||+||||.|....-+++..+. -.|.++|.+|..+++.+++-.. +..++.-.+-|...- +.. ...+++
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~-----~e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY-----DESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc-----chhhhcccceeccchhccCCCCcCcc
Confidence 3448999999999999999886554 7899999999999999987543 234555555554321 121 235789
Q ss_pred cEEEEcCCC-CCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 202 DAVIVDSSD-PIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~-~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+|++-..- .+.+ .. -...++.+.++|||||.+++--
T Consensus 146 D~it~IFvLSAi~p-ek--~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 146 DIITLIFVLSAIHP-EK--MQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred ceEEEEEEEeccCh-HH--HHHHHHHHHHHhCCCcEEEEee
Confidence 988752211 1222 11 2357899999999999999853
No 204
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.19 E-value=1.9e-05 Score=68.75 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=75.3
Q ss_pred eeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcC
Q 020933 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDS 208 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~ 208 (319)
+++|||+|.|.-+.-++=..|..+++.||....-+...+.-.... +-++++++++.+.+ .. ...+||+|++-+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L----~L~nv~v~~~R~E~--~~-~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL----GLSNVEVINGRAEE--PE-YRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH----T-SSEEEEES-HHH--TT-TTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh----CCCCEEEEEeeecc--cc-cCCCccEEEeeh
Confidence 899999999987777766567789999999998887777655544 33589999999888 22 268999999766
Q ss_pred CCCCCCccccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 209 SDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 209 ~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
..+ ...+++.+...|++||.+++.-+
T Consensus 124 v~~--------l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 124 VAP--------LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp SSS--------HHHHHHHHGGGEEEEEEEEEEES
T ss_pred hcC--------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 543 34689999999999999987543
No 205
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=2.4e-06 Score=75.67 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=77.9
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCC--eEEEEcChHHHHHhCCCCCccE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPR--VTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~--v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.-+.+++||||-|.+.+.+.... +++++.+|.+..|++.|+.. ++|. +...++| .+++. +.++++|+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~--------qdp~i~~~~~v~D-EE~Ld-f~ens~DL 140 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA--------QDPSIETSYFVGD-EEFLD-FKENSVDL 140 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc--------CCCceEEEEEecc-hhccc-ccccchhh
Confidence 34589999999999999998874 89999999999999998864 2333 4456677 45554 45789999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
||.....+|... .+..+..|+..|||+|.|+..
T Consensus 141 iisSlslHW~Nd----LPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 141 IISSLSLHWTND----LPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhhcc----CchHHHHHHHhcCCCccchhH
Confidence 998776665431 235789999999999999864
No 206
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.17 E-value=1.6e-05 Score=71.58 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=42.2
Q ss_pred cchhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHH
Q 020933 107 RDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDV 165 (319)
Q Consensus 107 ~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ 165 (319)
+..+...+.+.+... ....+.|||+|||+|+++..++++ +..+|++||+++.++..
T Consensus 58 r~~~kL~~~l~~~~~--~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 58 RGGEKLKEALEEFNI--DVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred hhHHHHHHHHHhcCC--CCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 334455666665432 135678999999999999999998 46899999999976654
No 207
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.15 E-value=7.2e-06 Score=74.39 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=64.5
Q ss_pred CCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
...+..||+||.|||.++..+++.. .+|++||+||.++....+.+... . ...+++++++|.... +...||.
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gt--p-~~~kLqV~~gD~lK~----d~P~fd~ 126 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGT--P-KSGKLQVLHGDFLKT----DLPRFDG 126 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCC--C-ccceeeEEecccccC----CCcccce
Confidence 3466799999999999999999884 78999999999999888887643 1 236899999994432 2468999
Q ss_pred EEEcCCCCCC
Q 020933 204 VIVDSSDPIG 213 (319)
Q Consensus 204 Ii~D~~~~~~ 213 (319)
+|.+.+..++
T Consensus 127 cVsNlPyqIS 136 (315)
T KOG0820|consen 127 CVSNLPYQIS 136 (315)
T ss_pred eeccCCcccc
Confidence 9987765543
No 208
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.12 E-value=1.4e-05 Score=83.15 Aligned_cols=113 Identities=17% Similarity=0.188 Sum_probs=76.4
Q ss_pred CCceeeEeeccccHHHHHHHhc----C--------------------------------------CCceEEEEECChHHH
Q 020933 126 NPKKVLVIGGGDGGVLREVSRH----S--------------------------------------SVEKIDICEIDKMVV 163 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~----~--------------------------------------~~~~v~~VEid~~vi 163 (319)
....++|.+||+|+++.+.+.. . ...+|+++|+|+.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 3578999999999999887541 0 112699999999999
Q ss_pred HHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcC---CCcEEEEe
Q 020933 164 DVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALR---PGGVVSTQ 240 (319)
Q Consensus 164 ~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~Lk---pgG~lv~~ 240 (319)
+.|++++... ++. .++++.++|+.++......++||+|++|++........-...++|+.+.+.|+ +|+.+++-
T Consensus 270 ~~A~~N~~~~--g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ll 346 (702)
T PRK11783 270 QAARKNARRA--GVA-ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALF 346 (702)
T ss_pred HHHHHHHHHc--CCC-cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 9999998765 443 37999999988764322235799999987653322111112345555444443 78776654
Q ss_pred c
Q 020933 241 A 241 (319)
Q Consensus 241 ~ 241 (319)
+
T Consensus 347 t 347 (702)
T PRK11783 347 S 347 (702)
T ss_pred e
Confidence 3
No 209
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=4.6e-05 Score=67.03 Aligned_cols=123 Identities=22% Similarity=0.273 Sum_probs=84.3
Q ss_pred CCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH-----HH-HhCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA-----FL-KAVP 197 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~-----~l-~~~~ 197 (319)
.+..+|+|||+--|+.+..+++.. +...|++||++|.- ..+++.++++|... -+ ....
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 456899999999999999998863 33459999998853 13568888888743 12 2223
Q ss_pred CCCccEEEEcCCCCCCCc---ccc----chHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCcee
Q 020933 198 EGTYDAVIVDSSDPIGPA---QEL----FEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVN 267 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~~~---~~l----~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~ 267 (319)
...+|+|++|......-. .+. .....++.+..+|+|||.+++- ....+....+++.+++.|. .+.
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K----~fqg~~~~~~l~~~~~~F~-~v~ 180 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK----VFQGEDFEDLLKALRRLFR-KVK 180 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE----EEeCCCHHHHHHHHHHhhc-eeE
Confidence 445799999987533211 111 1123456667899999999974 3444566888899999994 443
No 210
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=6.9e-06 Score=67.91 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=70.3
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+++++|||||.|-+....+-. +.+.|.++||||+.++++.++..+. + -++++.+.|..+... ..+.||..+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~-~~e~vlGfDIdpeALEIf~rNaeEf----E-vqidlLqcdildle~--~~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP-KNESVLGFDIDPEALEIFTRNAEEF----E-VQIDLLQCDILDLEL--KGGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC-CCceEEeeecCHHHHHHHhhchHHh----h-hhhheeeeeccchhc--cCCeEeeEE
Confidence 5789999999999998665544 5688999999999999999987765 1 255778888665432 247899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcC
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALR 232 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~Lk 232 (319)
.|++. +....-...+|.+...++.+
T Consensus 120 iNppF--GTk~~~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 120 INPPF--GTKKKGADMEFVSAALKVAS 144 (185)
T ss_pred ecCCC--CcccccccHHHHHHHHHHHH
Confidence 87654 33222235567776666555
No 211
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.08 E-value=1.5e-05 Score=74.11 Aligned_cols=116 Identities=19% Similarity=0.228 Sum_probs=88.8
Q ss_pred CCCceeeEeeccccHHHHHHHhcC-CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS-SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
....+|||+++|-|+=+..++... ....|+++|+++.-+...++++... ...++.+...|+..+........||.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~----g~~~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL----GVFNVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT----T-SSEEEEESHHHHHHHHHHTTTEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc----CCceEEEEeeccccccccccccccch
Confidence 345789999999999998888753 3578999999999999999888765 34578888899998854432456999
Q ss_pred EEEcCCCCCC-----Ccc-------------ccchHHHHHHHHHhc----CCCcEEEEecCCc
Q 020933 204 VIVDSSDPIG-----PAQ-------------ELFEKPFFESVAKAL----RPGGVVSTQAESI 244 (319)
Q Consensus 204 Ii~D~~~~~~-----~~~-------------~l~~~~f~~~~~~~L----kpgG~lv~~~~~~ 244 (319)
|++|++.... .+. .....+.++.+.+.+ ||||+++..+++.
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 9999875321 010 012457889999999 9999999988764
No 212
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.05 E-value=5.6e-05 Score=69.52 Aligned_cols=117 Identities=21% Similarity=0.342 Sum_probs=82.7
Q ss_pred CCCceeeEeeccccHHHHHHHhcCC--CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHH--HhCCCCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSS--VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFL--KAVPEGT 200 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l--~~~~~~~ 200 (319)
..|-+||||.||.|.-...++...+ ..+|...|.++..++..++..... ++.+ -++|.++|+++.- ... +.+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~--gL~~-i~~f~~~dAfd~~~l~~l-~p~ 209 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER--GLED-IARFEQGDAFDRDSLAAL-DPA 209 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--CCcc-ceEEEecCCCCHhHhhcc-CCC
Confidence 4678999999999998888766444 378999999999999999887664 4443 5699999998763 222 456
Q ss_pred ccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccC
Q 020933 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLH 247 (319)
Q Consensus 201 fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~ 247 (319)
.+++|+..-....+...+ -..-++-+.++|.|||+++.. +-||+.
T Consensus 210 P~l~iVsGL~ElF~Dn~l-v~~sl~gl~~al~pgG~lIyT-gQPwHP 254 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDL-VRRSLAGLARALEPGGYLIYT-GQPWHP 254 (311)
T ss_pred CCEEEEecchhhCCcHHH-HHHHHHHHHHHhCCCcEEEEc-CCCCCc
Confidence 788876322111122222 234578889999999999874 345653
No 213
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=3.7e-05 Score=69.87 Aligned_cols=102 Identities=24% Similarity=0.306 Sum_probs=78.5
Q ss_pred CCCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH--HHHhCCCCC
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGT 200 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~--~l~~~~~~~ 200 (319)
...+..||+-|+|+|+++..+++. .|-.++...|+...-.+.|++.|... +.. .++++.+-|... |.. ...+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h--gi~-~~vt~~hrDVc~~GF~~--ks~~ 177 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH--GIG-DNVTVTHRDVCGSGFLI--KSLK 177 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh--CCC-cceEEEEeecccCCccc--cccc
Confidence 345679999999999999999985 46689999999999999999988876 343 489999888643 222 2578
Q ss_pred ccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCc-EEEE
Q 020933 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGG-VVST 239 (319)
Q Consensus 201 fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG-~lv~ 239 (319)
+|+|++|.+.|+.. +-.+.++||.+| .+|.
T Consensus 178 aDaVFLDlPaPw~A---------iPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 178 ADAVFLDLPAPWEA---------IPHAAKILKDEGGRLCS 208 (314)
T ss_pred cceEEEcCCChhhh---------hhhhHHHhhhcCceEEe
Confidence 99999999998754 334445788777 5553
No 214
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.98 E-value=5.8e-05 Score=78.22 Aligned_cols=113 Identities=20% Similarity=0.302 Sum_probs=78.3
Q ss_pred CceeeEeeccccHHHHHHHhcC-------C-----CceEEEEECChH---HHHHHHhccccc--------------cCC-
Q 020933 127 PKKVLVIGGGDGGVLREVSRHS-------S-----VEKIDICEIDKM---VVDVSKQFFPDV--------------AVG- 176 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~-------~-----~~~v~~VEid~~---vi~~ak~~~~~~--------------~~~- 176 (319)
.-+|||+|.|+|.......+.. + .-+++.+|.+|. -+..+-+.++.. ..+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999765544211 1 347899998652 222221112110 001
Q ss_pred ----CCC--CCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 177 ----FED--PRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 177 ----~~~--~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+.+ -+++++.+|+++.+.+. ...+|+|+.|.+.|... ..+++.++|+.++++++|||++++-+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~-~~~~d~~~lD~FsP~~n-p~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL-DARADAWFLDGFAPAKN-PDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc-cccccEEEeCCCCCccC-hhhccHHHHHHHHHHhCCCCEEEEee
Confidence 122 25668889999999876 46799999999987654 45789999999999999999999743
No 215
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.98 E-value=0.00034 Score=62.21 Aligned_cols=124 Identities=20% Similarity=0.214 Sum_probs=85.4
Q ss_pred CCCCceeeEeeccccHHHHHHHhc-CCCceEEEEECCh----HHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCC-
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDK----MVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP- 197 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~----~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~- 197 (319)
...+.+||-||..+|.....++.- .+...|.+||.++ +++.+|+++ +|+--+.+|++..-+...
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----------~NIiPIl~DAr~P~~Y~~l 140 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----------PNIIPILEDARHPEKYRML 140 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----------TTEEEEES-TTSGGGGTTT
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----------CceeeeeccCCChHHhhcc
Confidence 345679999999999999998874 3467899999999 456666654 588889999986543321
Q ss_pred CCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec--CCc---ccChHHHHHHHHHHHh-hcC
Q 020933 198 EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA--ESI---WLHMHIIEDIVANCRQ-IFK 263 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~--~~~---~~~~~~~~~~~~~l~~-~F~ 263 (319)
-+..|+|+.|...|.. .+-+...+...||+||.+++.. .|. -.....+.+..+.+++ .|.
T Consensus 141 v~~VDvI~~DVaQp~Q------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 141 VEMVDVIFQDVAQPDQ------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp S--EEEEEEE-SSTTH------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCE
T ss_pred cccccEEEecCCChHH------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCC
Confidence 2589999999886643 3446677778999999887653 222 1234567888888887 473
No 216
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.97 E-value=4.2e-05 Score=70.54 Aligned_cols=109 Identities=17% Similarity=0.333 Sum_probs=65.5
Q ss_pred CCceeeEeeccccHHHHH-HHh-cCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 126 NPKKVLVIGGGDGGVLRE-VSR-HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~-l~~-~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.|++|+-||+|.--++.. +++ +.....|+++|+|++.++.+++-.... .++ ..+++++.+|+.....+. ..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L-~~~m~f~~~d~~~~~~dl--~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGL-SKRMSFITADVLDVTYDL--KEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH--SSEEEEES-GGGG-GG------SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccc-cCCeEEEecchhcccccc--ccCCE
Confidence 467999999997666554 443 445578999999999999999876511 022 358999999987764432 68999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|++.+.-.... --..+.++.+.+.++||..+++-.
T Consensus 196 V~lAalVg~~~---e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVGMDA---EPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEhhhccccc---chHHHHHHHHHhhCCCCcEEEEec
Confidence 99754432111 016789999999999999999864
No 217
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.96 E-value=4.2e-05 Score=71.36 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=74.2
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
..+-|||+|||+|.++...+.. +..+|.+||.+. |.+.|++....+ .+. .|+.++.|-..+. +. +++.|+||
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N--~~~-~rItVI~GKiEdi--eL-PEk~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASN--NLA-DRITVIPGKIEDI--EL-PEKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcC--Ccc-ceEEEccCccccc--cC-chhccEEE
Confidence 4678999999999998888777 578999999965 678888876544 233 5899998886654 23 58899999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+.+-.-.-..+++ .+-|-..++.|||+|.+.-..
T Consensus 249 SEPMG~mL~NERM--LEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 249 SEPMGYMLVNERM--LESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred eccchhhhhhHHH--HHHHHHHHhhcCCCCcccCcc
Confidence 6543221111111 133445679999999887544
No 218
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.93 E-value=0.00018 Score=64.07 Aligned_cols=99 Identities=19% Similarity=0.188 Sum_probs=73.8
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~ 206 (319)
+++++|||+|.|.=+.-++=..|..+||.+|....-+...++-.... +-++++++++-+.++-.+. .. ||+|.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL----~L~nv~i~~~RaE~~~~~~-~~-~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL----GLENVEIVHGRAEEFGQEK-KQ-YDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh----CCCCeEEehhhHhhccccc-cc-CcEEEe
Confidence 68999999999987777664445677999999988776665544333 4468999999988885422 12 999997
Q ss_pred cCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 207 DSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 207 D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
-+..+. ..+.+.+...|++||.+++
T Consensus 142 RAva~L--------~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 142 RAVASL--------NVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ehccch--------HHHHHHHHHhcccCCcchh
Confidence 555432 3578888999999998764
No 219
>PRK10742 putative methyltransferase; Provisional
Probab=97.93 E-value=8.6e-05 Score=67.24 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=67.7
Q ss_pred eeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccC--CCCC---CCeEEEEcChHHHHHhCCCCCccE
Q 020933 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV--GFED---PRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~--~~~~---~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
+|||+-+|.|..+.+++... .+|++||-++.+..+.+..+..... .... .|++++++|..+|+... ...||+
T Consensus 91 ~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~-~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-TPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC-CCCCcE
Confidence 89999999999999999884 4699999999999999988765210 0111 47999999999999876 458999
Q ss_pred EEEcCCCCCCC
Q 020933 204 VIVDSSDPIGP 214 (319)
Q Consensus 204 Ii~D~~~~~~~ 214 (319)
|++|+..|...
T Consensus 168 VYlDPMfp~~~ 178 (250)
T PRK10742 168 VYLDPMFPHKQ 178 (250)
T ss_pred EEECCCCCCCc
Confidence 99998876543
No 220
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.89 E-value=1.9e-05 Score=69.42 Aligned_cols=109 Identities=17% Similarity=0.295 Sum_probs=72.0
Q ss_pred eeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCC--CCeEEEEcCh-HHHHHh--CCCCCccE
Q 020933 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFED--PRVTLHIGDG-VAFLKA--VPEGTYDA 203 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~--~~v~v~~~D~-~~~l~~--~~~~~fDv 203 (319)
+|||||+|||--+.+++++.|...-.--|+++......+.+.... +..+ +-+.+-..+. ..+... ...+.||+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~--~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA--GLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc--CCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 599999999999999999888777888899999876666654432 1111 1222222221 122100 01468999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|++--.-++.+-.. ...+|+.+.++|++||.|++-.
T Consensus 106 i~~~N~lHI~p~~~--~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 106 IFCINMLHISPWSA--VEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred eeehhHHHhcCHHH--HHHHHHHHHHhCCCCCEEEEeC
Confidence 99643334433221 4678999999999999999754
No 221
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.86 E-value=4.1e-05 Score=67.53 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=64.2
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC--CCCCccE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~--~~~~fDv 203 (319)
+...|+|.-||.|+.+.+.+..+ ..|.++||||.-|..|+.++.-. |..+ |++|++||..+..... .+..+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiY--GI~~-rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVY--GVPD-RITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceee--cCCc-eeEEEechHHHHHHHHhhhhheeee
Confidence 66789999999999888888775 46999999999999999998766 5556 9999999987765433 2345778
Q ss_pred EEEcCCCCCCCc
Q 020933 204 VIVDSSDPIGPA 215 (319)
Q Consensus 204 Ii~D~~~~~~~~ 215 (319)
|+ .+.|++-+
T Consensus 169 vf--~sppwggp 178 (263)
T KOG2730|consen 169 VF--LSPPWGGP 178 (263)
T ss_pred ee--cCCCCCCc
Confidence 88 45555443
No 222
>PRK04148 hypothetical protein; Provisional
Probab=97.86 E-value=6.5e-05 Score=61.85 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=51.5
Q ss_pred CCceeeEeeccccH-HHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
++.+|||||||.|. ++..|.+.. .+|+++|+++..++.+++. .++++++|.++.-... -+.+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~-y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEI-YKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHH-HhcCCEE
Confidence 45789999999996 777787663 6899999999999988764 3678888876542221 3578999
Q ss_pred EE
Q 020933 205 IV 206 (319)
Q Consensus 205 i~ 206 (319)
..
T Consensus 82 ys 83 (134)
T PRK04148 82 YS 83 (134)
T ss_pred EE
Confidence 94
No 223
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=97.84 E-value=7.2e-05 Score=60.94 Aligned_cols=61 Identities=28% Similarity=0.550 Sum_probs=47.6
Q ss_pred CCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 179 DPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 179 ~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+-+++++.+|+++.+++. ...||+|+.|.+.|... .++++.++|+.++++++|||++++-+
T Consensus 30 ~v~L~L~~gDa~~~l~~l-~~~~Da~ylDgFsP~~n-PelWs~e~~~~l~~~~~~~~~l~Tys 90 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQL-DARFDAWYLDGFSPAKN-PELWSEELFKKLARLSKPGGTLATYS 90 (124)
T ss_dssp TEEEEEEES-HHHHHHHB--T-EEEEEE-SS-TTTS-GGGSSHHHHHHHHHHEEEEEEEEES-
T ss_pred CEEEEEEEcHHHHHHHhC-cccCCEEEecCCCCcCC-cccCCHHHHHHHHHHhCCCcEEEEee
Confidence 346788999999999887 58999999999887654 44899999999999999999999743
No 224
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.83 E-value=2.8e-05 Score=73.08 Aligned_cols=92 Identities=25% Similarity=0.326 Sum_probs=69.9
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~ 206 (319)
-...+|+|+|.|.++..++.++| +|.+++.|...+..++.++. +.++.+.+|+++-+ | +-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~~---P--~~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQDT---P--KGDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceecccccccC---C--CcCeEEE
Confidence 36899999999999999988765 58999999877776666653 23788888866542 2 3468886
Q ss_pred -----cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 207 -----DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 207 -----D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|.+|.. -..||+.|++.|+|||.+++-
T Consensus 243 kWiLhdwtDed-------cvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 243 KWILHDWTDED-------CVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred EeecccCChHH-------HHHHHHHHHHhCCCCCEEEEE
Confidence 444322 247999999999999998875
No 225
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.81 E-value=0.00017 Score=64.77 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=58.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+++||.||-.+-......+... ..+|+++|||+.+++..++..... + -+++.+..|.+.-+...-.++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~--g---l~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGL-PKRITVVDIDERLLDFINRVAEEE--G---LPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHH--T-----EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHc--C---CceEEEEecccccCCHHHhcCCCEEE
Confidence 47899999988765444333333 479999999999999988877654 2 24999999998877542258999999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCc
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGG 235 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG 235 (319)
.|++... .. -.-|+......||..|
T Consensus 118 TDPPyT~---~G--~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 118 TDPPYTP---EG--LKLFLSRGIEALKGEG 142 (243)
T ss_dssp E---SSH---HH--HHHHHHHHHHTB-STT
T ss_pred eCCCCCH---HH--HHHHHHHHHHHhCCCC
Confidence 9876521 11 2458888899999887
No 226
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.81 E-value=9.1e-05 Score=65.16 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=63.8
Q ss_pred CCceeeEeeccccHHH----HHHHh---c-CC-CceEEEEECChHHHHHHHhcc-ccc------------------cCCC
Q 020933 126 NPKKVLVIGGGDGGVL----REVSR---H-SS-VEKIDICEIDKMVVDVSKQFF-PDV------------------AVGF 177 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~----~~l~~---~-~~-~~~v~~VEid~~vi~~ak~~~-~~~------------------~~~~ 177 (319)
.+-+|+-.||++|--+ ..+.. . .+ ..+|.+.|||+.+++.|++-. +.. ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4679999999999743 23333 1 11 358999999999999998731 110 0011
Q ss_pred C-----CCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 178 E-----DPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 178 ~-----~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
. ..+++|...|..+. ....+.||+|+|--.-- +-. .-.....++.+.+.|+|||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~--~~~~~~fD~I~CRNVlI-YF~-~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDP--DPPFGRFDLIFCRNVLI-YFD-PETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGG-GS--HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCC--CcccCCccEEEecCEEE-EeC-HHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0 15889999998771 12357899999732111 110 111457899999999999999974
No 227
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.80 E-value=6e-05 Score=69.23 Aligned_cols=100 Identities=22% Similarity=0.245 Sum_probs=71.2
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCccEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fDvI 204 (319)
....|||||.|.|.+++.++++. .++++||+|+.+.+..++.+. .+++++++.+|+.++-... -......|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~D~l~~~~~~~~~~~~~~v 101 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVINGDFLKWDLYDLLKNQPLLV 101 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES-TTTSCGGGHCSSSEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeecchhccccHHhhcCCceEE
Confidence 56799999999999999999986 799999999999999999876 2579999999988763211 01345677
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCC---CcEEEEe
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRP---GGVVSTQ 240 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~Lkp---gG~lv~~ 240 (319)
+.+.+. .. +..++..+...-+. ..++++|
T Consensus 102 v~NlPy--~i-----s~~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 102 VGNLPY--NI-----SSPILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp EEEETG--TG-----HHHHHHHHHHHGGGCEEEEEEEEE
T ss_pred EEEecc--cc-----hHHHHHHHhhcccccccceEEEEe
Confidence 766653 21 33455555553333 3556665
No 228
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.78 E-value=9.6e-05 Score=72.54 Aligned_cols=181 Identities=17% Similarity=0.292 Sum_probs=94.5
Q ss_pred CCCCCCCCCcccCCeeeccCCCCCCceeEeecceEEEEEeCCCccEEEEEecC-----CeeEEEE-cCeEeecccchhHH
Q 020933 39 SNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSST-----YGKVLIL-DGVIQLTERDECAY 112 (319)
Q Consensus 39 ~~~~~~~~~~~~~~w~~~~~~~~~g~~~~~~~~~vl~~~~s~yq~i~v~~~~~-----~g~~L~l-dg~~q~~~~de~~Y 112 (319)
++....|+-|.-.|.=.-+ .||-. ...+-...-++-.+...+..+ -|..+.+ .|..|+... ...|
T Consensus 31 ~~~~~~CLVp~P~gYk~P~--~WP~S------Rd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~G-a~~Y 101 (506)
T PF03141_consen 31 PEERLRCLVPPPKGYKTPI--PWPKS------RDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHG-ADHY 101 (506)
T ss_pred CCCCCccccCCCccCCCCC--CCCcc------cceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCC-HHHH
Confidence 3455677766667732222 38843 234444455555554433221 1222322 334444332 2456
Q ss_pred HHHHHhc-ccc-CCCCCceeeEeeccccHHHHHHHhcCCCceEEE--EECChHHHHHHHhc-cccccCCCCCCCeEEEEc
Q 020933 113 QEMITHL-PLC-SIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDI--CEIDKMVVDVSKQF-FPDVAVGFEDPRVTLHIG 187 (319)
Q Consensus 113 ~e~l~~l-~l~-~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~--VEid~~vi~~ak~~-~~~~~~~~~~~~v~v~~~ 187 (319)
.+.|..+ ++. ....-+.+||+|||+|.++..++.+. +..+.. -|..+..++.|-+. ++.+ +.+. +
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfaleRGvpa~--------~~~~-~ 171 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALERGVPAM--------IGVL-G 171 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhhcCcchh--------hhhh-c
Confidence 6555443 331 22234689999999999999999873 222111 13344455555433 2211 0110 1
Q ss_pred ChHHHHHhCCCCCccEEEEc-CCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcc
Q 020933 188 DGVAFLKAVPEGTYDAVIVD-SSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIW 245 (319)
Q Consensus 188 D~~~~l~~~~~~~fDvIi~D-~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~ 245 (319)
. +=+. ++.+.||+|-+. .-.++..... -++-++-|+|+|||+++......+
T Consensus 172 s--~rLP-fp~~~fDmvHcsrc~i~W~~~~g----~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 172 S--QRLP-FPSNAFDMVHCSRCLIPWHPNDG----FLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred c--cccc-CCccchhhhhcccccccchhccc----ceeehhhhhhccCceEEecCCccc
Confidence 1 1111 247899999762 2234443222 256678999999999998765444
No 229
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.74 E-value=8.1e-05 Score=71.85 Aligned_cols=104 Identities=23% Similarity=0.362 Sum_probs=78.8
Q ss_pred CceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+.+|||.=+|+|.=+.-.++. .+..+|++-|+|++.++..++++..+ +..+.++++.+.|+...+... .+.||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N--~~~~~~~~v~~~DAn~ll~~~-~~~fD~ID 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN--GLEDERIEVSNMDANVLLYSR-QERFDVID 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC--T-SGCCEEEEES-HHHHHCHS-TT-EEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc--cccCceEEEehhhHHHHhhhc-cccCCEEE
Confidence 458999999999877666655 66789999999999999999997765 334447999999999988533 68999999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|++.. -..|++.+.+.++.||+|++.+
T Consensus 127 lDPfGS--------p~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 LDPFGS--------PAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp E--SS----------HHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCC--------ccHhHHHHHHHhhcCCEEEEec
Confidence 997753 1369999999999999999875
No 230
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.69 E-value=0.00013 Score=64.73 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=62.3
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhcccccc-----CCCCCCCeEEEEcChHHH--HHhCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VGFEDPRVTLHIGDGVAF--LKAVP 197 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-----~~~~~~~v~v~~~D~~~~--l~~~~ 197 (319)
......+|||+|.|....+++...+..+..+||+.+...+.|++...... .+....++++..+|..+. ....
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~- 119 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI- 119 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh-
Confidence 35678999999999998888765567789999999999998876432211 133456889999997542 2211
Q ss_pred CCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 198 EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
-..-|+|+++...- ... ....++.....||+|-.++.
T Consensus 120 ~s~AdvVf~Nn~~F---~~~--l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 120 WSDADVVFVNNTCF---DPD--LNLALAELLLELKPGARIIS 156 (205)
T ss_dssp GHC-SEEEE--TTT----HH--HHHHHHHHHTTS-TT-EEEE
T ss_pred hcCCCEEEEecccc---CHH--HHHHHHHHHhcCCCCCEEEE
Confidence 13469999876531 111 12334556678888877664
No 231
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.66 E-value=0.00011 Score=68.44 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=69.9
Q ss_pred CCceeeEeeccccHHH----HHHHhcC----CCceEEEEECChHHHHHHHhcccc-c----------------c----CC
Q 020933 126 NPKKVLVIGGGDGGVL----REVSRHS----SVEKIDICEIDKMVVDVSKQFFPD-V----------------A----VG 176 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~----~~l~~~~----~~~~v~~VEid~~vi~~ak~~~~~-~----------------~----~~ 176 (319)
.+-+|+..||++|--+ ..+.+.. ...+|+++|||+.+++.|++-.-. . . .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3469999999999743 3333321 135799999999999999875211 0 0 00
Q ss_pred -C-----CCCCeEEEEcChHHHHHhCCCCCccEEEE-cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 177 -F-----EDPRVTLHIGDGVAFLKAVPEGTYDAVIV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 177 -~-----~~~~v~v~~~D~~~~l~~~~~~~fDvIi~-D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+ -..+|+|...|..+... .+.+.||+|+| +..-.... -.....++.+.+.|+|||+|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~-~~~~~fD~I~cRNvliyF~~---~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQW-AVPGPFDAIFCRNVMIYFDK---TTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCC-ccCCCcceeeHhhHHhcCCH---HHHHHHHHHHHHHhCCCcEEEEe
Confidence 0 01466777777654210 01478999997 22111111 11457899999999999998874
No 232
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.64 E-value=4.9e-05 Score=69.80 Aligned_cols=186 Identities=16% Similarity=0.110 Sum_probs=127.7
Q ss_pred CCCCCCcccCCeeeccCCCCC-CceeEeecceEEEEEeCCCccEEEEEecCCeeEEEEcCeEeecccchhHHHHHHHhcc
Q 020933 42 QPDCISSVIPGWFSEISPMWP-GEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLP 120 (319)
Q Consensus 42 ~~~~~~~~~~~w~~~~~~~~~-g~~~~~~~~~vl~~~~s~yq~i~v~~~~~~g~~L~ldg~~q~~~~de~~Y~e~l~~l~ 120 (319)
..++++++.++=|.|.+..-| +.--.+|+..|+..+.++++++.+-+ +..|+++.++...+..+.+ ..|...|+.
T Consensus 95 gviqlte~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~s-k~y~p~la~-- 170 (337)
T KOG1562|consen 95 GVIQLTERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESS-KQYLPTLAC-- 170 (337)
T ss_pred CeeeCCccccccceeeeeccccccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHH-HHHhHHHhc--
Confidence 357888999998888875334 45567899999999999999998877 7899999999877776665 456554432
Q ss_pred ccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccc----cccCCCCCCCeEEEEcChHHHHHhC
Q 020933 121 LCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP----DVAVGFEDPRVTLHIGDGVAFLKAV 196 (319)
Q Consensus 121 l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~----~~~~~~~~~~v~v~~~D~~~~l~~~ 196 (319)
. -..++|..+|| +|....+..+..+ ..|+++|+|..+...+..|.. .....+....+.+.++|..-+....
T Consensus 171 --g-y~~~~v~l~iG-DG~~fl~~~~~~~-~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~ 245 (337)
T KOG1562|consen 171 --G-YEGKKVKLLIG-DGFLFLEDLKENP-FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDY 245 (337)
T ss_pred --c-cCCCceEEEec-cHHHHHHHhccCC-ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHH
Confidence 1 25568888887 9988888886644 689999999888887766543 3333456678999999986543322
Q ss_pred --CCCCccEEEEcCCC------CCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 197 --PEGTYDAVIVDSSD------PIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 197 --~~~~fDvIi~D~~~------~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
...+||.++.+..+ |..+..+ -.|..+.. |+|+|-+....
T Consensus 246 i~e~r~~~~~~f~~t~ya~ttvPTypsg~----igf~l~s~-~~~~~~~~~p~ 293 (337)
T KOG1562|consen 246 IKEGRSFCYVIFDLTAYAITTVPTYPSGR----IGFMLCSK-LKPDGKYKTPG 293 (337)
T ss_pred HHHHHHhHHHhcCccceeeecCCCCccce----EEEEEecc-cCCCCCccCCC
Confidence 12456666554433 1122111 12333444 89999888764
No 233
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.62 E-value=0.00029 Score=62.39 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=76.1
Q ss_pred eeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCC
Q 020933 130 VLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSS 209 (319)
Q Consensus 130 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~ 209 (319)
|.||||--|.++.+|++.....+++++|+++.-++.|++++... ++. .+++++.+|+.+.+.. .+..|.|++-.-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l~-~~i~~rlgdGL~~l~~--~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GLE-DRIEVRLGDGLEVLKP--GEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T-T-TTEEEEE-SGGGG--G--GG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCc-ccEEEEECCcccccCC--CCCCCEEEEecC
Confidence 68999999999999999887889999999999999999998765 444 4899999999998753 344788875321
Q ss_pred CCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHH
Q 020933 210 DPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIV 255 (319)
Q Consensus 210 ~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 255 (319)
.. ....++++.....++..-.|++|. ..+...+++.+
T Consensus 76 GG------~lI~~ILe~~~~~~~~~~~lILqP---~~~~~~LR~~L 112 (205)
T PF04816_consen 76 GG------ELIIEILEAGPEKLSSAKRLILQP---NTHAYELRRWL 112 (205)
T ss_dssp -H------HHHHHHHHHTGGGGTT--EEEEEE---SS-HHHHHHHH
T ss_pred CH------HHHHHHHHhhHHHhccCCeEEEeC---CCChHHHHHHH
Confidence 11 113467777777787777899884 33444444443
No 234
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.59 E-value=0.00038 Score=61.42 Aligned_cols=116 Identities=27% Similarity=0.308 Sum_probs=64.0
Q ss_pred chhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHh---c-CCCceEEEEECChHHHH-HHHhccccccCCCCCCCe
Q 020933 108 DECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSR---H-SSVEKIDICEIDKMVVD-VSKQFFPDVAVGFEDPRV 182 (319)
Q Consensus 108 de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~---~-~~~~~v~~VEid~~vi~-~ak~~~~~~~~~~~~~~v 182 (319)
|-..|++++-.+ +|+.|+++|.-.|+.+...+. . .+..+|.+||||-.-.. .+.+..+. .+++
T Consensus 20 Dm~~~qeli~~~------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~------~~rI 87 (206)
T PF04989_consen 20 DMVAYQELIWEL------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM------SPRI 87 (206)
T ss_dssp HHHHHHHHHHHH--------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTE
T ss_pred HHHHHHHHHHHh------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc------cCce
Confidence 456788887653 789999999999998877654 2 25689999999754332 22222221 3799
Q ss_pred EEEEcChHH--HHHhC----CCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 183 TLHIGDGVA--FLKAV----PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 183 ~v~~~D~~~--~l~~~----~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
++++||..+ .+.+. ......+||.|+...... ...-|+.....+++|+++++.
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~h-----vl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEH-----VLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS----SS-----HHHHHHHHHHT--TT-EEEET
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHH-----HHHHHHHhCccCCCCCEEEEE
Confidence 999999753 22221 123556888887743222 334577789999999999874
No 235
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00043 Score=65.62 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=84.0
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~ 206 (319)
+.+|||-=+|+|.=+.-++...+..+|++-||+|..+++.++++..+ ......+++.|+..++.+. ...||+|=+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N----~~~~~~v~n~DAN~lm~~~-~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN----SGEDAEVINKDANALLHEL-HRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc----CcccceeecchHHHHHHhc-CCCccEEec
Confidence 78999999999998777766545558999999999999999998765 2345677779999998765 588999998
Q ss_pred cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 207 DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 207 D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|++..-. +|++...+.++.||++++.+
T Consensus 128 DPFGSPa--------PFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DPFGSPA--------PFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCCc--------hHHHHHHHHhhcCCEEEEEe
Confidence 8775322 59999999999999999875
No 236
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.0003 Score=67.37 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=80.6
Q ss_pred ceeeEeeccccHHHHHHHhcCC--------------------------------Cc-------eEEEEECChHHHHHHHh
Q 020933 128 KKVLVIGGGDGGVLREVSRHSS--------------------------------VE-------KIDICEIDKMVVDVSKQ 168 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~~--------------------------------~~-------~v~~VEid~~vi~~ak~ 168 (319)
..++|-=||+|+++.+.+-... .. .+.++|+|+.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 5899999999999999765431 01 37799999999999999
Q ss_pred ccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCccc-----cchHHHHHHHHHhcCCCcEEEEec
Q 020933 169 FFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQE-----LFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 169 ~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~-----l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+.... +.. ..++|.++|+..+-.. -+.+|+||+|++.......+ || .+|.+.+++.++--+.+++.+
T Consensus 273 NA~~A--Gv~-d~I~f~~~d~~~l~~~--~~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 273 NARAA--GVG-DLIEFKQADATDLKEP--LEEYGVVISNPPYGERLGSEALVAKLY-REFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHhc--CCC-ceEEEEEcchhhCCCC--CCcCCEEEeCCCcchhcCChhhHHHHH-HHHHHHHHHHhcCCceEEEEc
Confidence 97765 433 4799999998876432 26899999988764432211 33 367778888888888888764
No 237
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.55 E-value=0.00031 Score=61.93 Aligned_cols=104 Identities=15% Similarity=0.264 Sum_probs=57.5
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
++...|-|+|||++.++..+... .+|...|+-. .++ .+...|...... ++++.|++
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva-----------------~n~--~Vtacdia~vPL--~~~svDv~ 126 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVA-----------------PNP--RVTACDIANVPL--EDESVDVA 126 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS------------------SST--TEEES-TTS-S----TT-EEEE
T ss_pred CCCEEEEECCCchHHHHHhcccC---ceEEEeeccC-----------------CCC--CEEEecCccCcC--CCCceeEE
Confidence 44568999999999999776422 3577777622 122 366678755432 36899999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe-cCCcccChHHHHHHHHHHHh
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ-AESIWLHMHIIEDIVANCRQ 260 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~-~~~~~~~~~~~~~~~~~l~~ 260 (319)
|..++--.. ...+|++++.|+|||||.|.+- +.|.+.. ++.+.+.+.+
T Consensus 127 VfcLSLMGT-----n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~---~~~F~~~~~~ 175 (219)
T PF05148_consen 127 VFCLSLMGT-----NWPDFIREANRVLKPGGILKIAEVKSRFEN---VKQFIKALKK 175 (219)
T ss_dssp EEES---SS------HHHHHHHHHHHEEEEEEEEEEEEGGG-S----HHHHHHHHHC
T ss_pred EEEhhhhCC-----CcHHHHHHHHheeccCcEEEEEEecccCcC---HHHHHHHHHH
Confidence 976553111 1458999999999999998765 3444443 3444455543
No 238
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.43 E-value=0.0006 Score=64.47 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=77.8
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
....++||||+++|+.+..++++. .+|++||..+..-.+ .++++|+.+.+|+..+... .+.+|+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~L-----------~~~~~V~h~~~d~fr~~p~--~~~vDwv 274 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQSL-----------MDTGQVEHLRADGFKFRPP--RKNVDWL 274 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHhh-----------hCCCCEEEEeccCcccCCC--CCCCCEE
Confidence 356799999999999999999984 489999966532111 1468999999999988642 5689999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCC--cEEEEecCCcc-cChHHHHHHHHHHHhhc
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPG--GVVSTQAESIW-LHMHIIEDIVANCRQIF 262 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~Lkpg--G~lv~~~~~~~-~~~~~~~~~~~~l~~~F 262 (319)
++|.... | ....+.+.+.|..| ...+++.--+- .+.+.....++.+.+.+
T Consensus 275 VcDmve~--P------~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~~~l 327 (357)
T PRK11760 275 VCDMVEK--P------ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIEEQL 327 (357)
T ss_pred EEecccC--H------HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 9998752 1 24567777778766 34555542111 12233444444455444
No 239
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.42 E-value=0.00063 Score=62.62 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=68.9
Q ss_pred CCceeeEeeccccH----HHHHHHhcCC-----CceEEEEECChHHHHHHHhcc-c-ccc-CCC------------CC--
Q 020933 126 NPKKVLVIGGGDGG----VLREVSRHSS-----VEKIDICEIDKMVVDVSKQFF-P-DVA-VGF------------ED-- 179 (319)
Q Consensus 126 ~~~~VL~IG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~ak~~~-~-~~~-~~~------------~~-- 179 (319)
.+-+|.-.||++|- ++..+.+..+ ..+|++.|||..+++.|++-. + ... .+. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999997 4444445432 468999999999999998642 2 000 000 01
Q ss_pred --------CCeEEEEcChHHHHHhCCCCCccEEEE-cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 180 --------PRVTLHIGDGVAFLKAVPEGTYDAVIV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 180 --------~~v~v~~~D~~~~l~~~~~~~fDvIi~-D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
..|.|...|...-.. ..+.||+|+| |.-- +- ..-...+.++.++..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNVLI--YF-d~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNVLI--YF-DEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcceEE--ee-CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 244555555332211 1467999997 2110 00 0111467899999999999999973
No 240
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.38 E-value=0.00049 Score=60.15 Aligned_cols=114 Identities=23% Similarity=0.287 Sum_probs=83.9
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccc----cCCCCCCCeEEEEcChHHHHHhC-CCCCc
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV----AVGFEDPRVTLHIGDGVAFLKAV-PEGTY 201 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~----~~~~~~~~v~v~~~D~~~~l~~~-~~~~f 201 (319)
.-.+.|||||-|+++..|+-.+|..-|.+.||--.|.+..+..+... +.++ -+++.+....+..|+.+. ..++-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~-~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQ-YPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccc-cccceeeeccchhhccchhhhccc
Confidence 34789999999999999999889999999999999999888876443 1222 367889999998887654 22333
Q ss_pred cEEEEcCCCCC----CCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 202 DAVIVDSSDPI----GPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~----~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+-++.-.++|. .......+...+....-+|++||++.+.+
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 33333344442 22344556678888999999999998754
No 241
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.35 E-value=0.0028 Score=59.84 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=74.0
Q ss_pred CCCceeeEeeccccHHHHHHHhcC----CCceEEEEECChHHHHHHHhccccccCCCCCCCeEE--EEcChHHHHHhCC-
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHS----SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTL--HIGDGVAFLKAVP- 197 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~----~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v--~~~D~~~~l~~~~- 197 (319)
+.+..++|+|||+|.=++.|++.. ....++.||||.+.++.+.+.+... .-|.+++ +++|..+-+...+
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~----~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG----NFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc----cCCCeEEEEEEecHHHHHhhccc
Confidence 345589999999999777665532 2357999999999999999888621 1255666 7888765543211
Q ss_pred ---CCCccEEEEcCCCCCCCccccchHHHHHHHHH-hcCCCcEEEEec
Q 020933 198 ---EGTYDAVIVDSSDPIGPAQELFEKPFFESVAK-ALRPGGVVSTQA 241 (319)
Q Consensus 198 ---~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~-~LkpgG~lv~~~ 241 (319)
.....+|+.-.+ .++.-.......|++.+++ .|+|||.|++-.
T Consensus 151 ~~~~~~~r~~~flGS-siGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 151 PENRSRPTTILWLGS-SIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccccCCccEEEEeCc-cccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 233566653211 2222111224579999999 999999998854
No 242
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.30 E-value=0.001 Score=61.26 Aligned_cols=111 Identities=19% Similarity=0.249 Sum_probs=73.9
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhcccc------------cc---C---------C-----
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD------------VA---V---------G----- 176 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~------------~~---~---------~----- 176 (319)
++.+||+-|||-|.++.++++.+ -.+.+.|.|--|+=..+--+.. .. . .
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 45799999999999999999983 5799999998886543321110 00 0 0
Q ss_pred -------CCCCCeEEEEcChHHHHHhC-CCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 177 -------FEDPRVTLHIGDGVAFLKAV-PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 177 -------~~~~~v~v~~~D~~~~l~~~-~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
....++.+..||..++-... ..++||+|+...+-- .+.. -.++++.+.++|||||+.+ |.+.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~N--i~~Yi~tI~~lLkpgG~WI-N~GP 203 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAEN--IIEYIETIEHLLKPGGYWI-NFGP 203 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHH--HHHHHHHHHHHhccCCEEE-ecCC
Confidence 01347888889977764321 136899998643211 1111 3479999999999999654 5544
No 243
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.29 E-value=0.00057 Score=56.24 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=45.8
Q ss_pred eeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcC
Q 020933 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD 188 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D 188 (319)
.|||||||.|..+..+++..+..+|+++|.+|.+.+.+++++... + -++++++...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n--~--~~~v~~~~~a 56 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN--N--LPNVVLLNAA 56 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc--C--CCcEEEEEee
Confidence 389999999999999998876668999999999999999987654 1 1357777655
No 244
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.0076 Score=52.21 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEc-ChHH------HHHhCC
Q 020933 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG-DGVA------FLKAVP 197 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~-D~~~------~l~~~~ 197 (319)
+..+|||+|+.-|..+.-..+. .|...|.+||+-. .++ .+.++++.+ |..+ ..+..+
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~~p-------~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------IEP-------PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------ccC-------CCCcccccccccCCHHHHHHHHHhCC
Confidence 4679999999999998877665 4778899999832 111 234555555 4422 222335
Q ss_pred CCCccEEEEcCCCC-CCCc--cccchH----HHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCcee
Q 020933 198 EGTYDAVIVDSSDP-IGPA--QELFEK----PFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSVN 267 (319)
Q Consensus 198 ~~~fDvIi~D~~~~-~~~~--~~l~~~----~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v~ 267 (319)
....|+|++|.... .+.. .+...- +.+......++|+|.++.- .|... .-..+.+.+.+.|. .|.
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK---~w~g~-e~~~l~r~l~~~f~-~Vk 205 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK---LWDGS-EEALLQRRLQAVFT-NVK 205 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE---EecCC-chHHHHHHHHHHhh-hcE
Confidence 67899999987642 2211 111111 1233335678899999975 34333 33556677888883 453
No 245
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.27 E-value=0.0019 Score=60.48 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=63.2
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC---CCCCcc
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV---PEGTYD 202 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~---~~~~fD 202 (319)
++..++|.=+|.|+-+..+++..+..+|+++|.|+.+++.+++.+... ..|+++++++..++.... ...++|
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~vD 94 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKID 94 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence 456899999999999999998654489999999999999999987543 358999999988764332 235799
Q ss_pred EEEEcC
Q 020933 203 AVIVDS 208 (319)
Q Consensus 203 vIi~D~ 208 (319)
.|+.|+
T Consensus 95 gIl~DL 100 (305)
T TIGR00006 95 GILVDL 100 (305)
T ss_pred EEEEec
Confidence 999864
No 246
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0021 Score=60.98 Aligned_cols=136 Identities=13% Similarity=0.175 Sum_probs=91.4
Q ss_pred CCCCCceeeEeeccccHHHHHHHhc--CC--CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC--
Q 020933 123 SIPNPKKVLVIGGGDGGVLREVSRH--SS--VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-- 196 (319)
Q Consensus 123 ~~~~~~~VL~IG~G~G~~~~~l~~~--~~--~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-- 196 (319)
...+..+|||+++.-|+=+..+++. .. ...|++=|.|+.-+...++-.... ..+++.+...|+..+....
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceeccccccc
Confidence 3456789999999999988777652 21 237899999998877766655433 3456677666665443221
Q ss_pred -----CCCCccEEEEcCCCC-CCC---cc---------------ccchHHHHHHHHHhcCCCcEEEEecCC--cccChHH
Q 020933 197 -----PEGTYDAVIVDSSDP-IGP---AQ---------------ELFEKPFFESVAKALRPGGVVSTQAES--IWLHMHI 250 (319)
Q Consensus 197 -----~~~~fDvIi~D~~~~-~~~---~~---------------~l~~~~f~~~~~~~LkpgG~lv~~~~~--~~~~~~~ 250 (319)
....||-|++|.+.. .+. .. +.....+++...++||+||.+|-.++| +......
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaV 307 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAV 307 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHH
Confidence 135799999987642 111 01 112345788889999999999998865 4455566
Q ss_pred HHHHHHHHHhhc
Q 020933 251 IEDIVANCRQIF 262 (319)
Q Consensus 251 ~~~~~~~l~~~F 262 (319)
..++++.+...|
T Consensus 308 V~~~L~~~~~~~ 319 (375)
T KOG2198|consen 308 VQEALQKVGGAV 319 (375)
T ss_pred HHHHHHHhcCcc
Confidence 777777776666
No 247
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.23 E-value=0.004 Score=49.19 Aligned_cols=102 Identities=18% Similarity=0.227 Sum_probs=65.8
Q ss_pred eeEeeccccHHHHHHHhcCCC-ceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH-HHhCCC-CCccEEEE
Q 020933 130 VLVIGGGDGGVLREVSRHSSV-EKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF-LKAVPE-GTYDAVIV 206 (319)
Q Consensus 130 VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~-l~~~~~-~~fDvIi~ 206 (319)
+|++|||+|... .+.+.... ..++++|+++.+++.++...... ....+.+..+|.... +. ... ..||++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA----GLGLVDFVVADALGGVLP-FEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc----CCCceEEEEeccccCCCC-CCCCCceeEEee
Confidence 999999999876 33333221 37888999999999855443211 111167888886652 22 213 47999943
Q ss_pred cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 207 DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 207 D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
........ ....++.+.+.|+|+|.+++...
T Consensus 126 ~~~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 126 LLVLHLLP-----PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eeehhcCC-----HHHHHHHHHHhcCCCcEEEEEec
Confidence 32221111 35789999999999999887653
No 248
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.22 E-value=0.0028 Score=56.23 Aligned_cols=119 Identities=13% Similarity=0.178 Sum_probs=90.7
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
++..++.||||--+.++.++.+..+...++++|+++.-++.|+++++.. ++ .+++++..+|+...+.. +..+|+|
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~--~l-~~~i~vr~~dgl~~l~~--~d~~d~i 89 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN--NL-SERIDVRLGDGLAVLEL--EDEIDVI 89 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc--CC-cceEEEeccCCccccCc--cCCcCEE
Confidence 3455699999999999999999878899999999999999999999875 33 46999999999877752 4579998
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHH
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVAN 257 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~ 257 (319)
++-.-.. ..-.+++++-.+.|+.=-.+++| |..+...++..+..
T Consensus 90 vIAGMGG------~lI~~ILee~~~~l~~~~rlILQ---Pn~~~~~LR~~L~~ 133 (226)
T COG2384 90 VIAGMGG------TLIREILEEGKEKLKGVERLILQ---PNIHTYELREWLSA 133 (226)
T ss_pred EEeCCcH------HHHHHHHHHhhhhhcCcceEEEC---CCCCHHHHHHHHHh
Confidence 8543221 12357888888888855578887 44455555555443
No 249
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.0011 Score=65.37 Aligned_cols=107 Identities=18% Similarity=0.270 Sum_probs=77.8
Q ss_pred CceeeEeeccccHHHHHHHhc----CCCceEEEEECChHHHHHHHh-ccccccCCCCCCCeEEEEcChHHHHHhCCCCCc
Q 020933 127 PKKVLVIGGGDGGVLREVSRH----SSVEKIDICEIDKMVVDVSKQ-FFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTY 201 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~ak~-~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~f 201 (319)
...|+.+|+|-|-+....++. ..-.++.+||.+|..+-..+. ++... +.+|+++..|.+.|.. +.++.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~~DMR~w~a--p~eq~ 440 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIISSDMRKWNA--PREQA 440 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEeccccccCC--chhhc
Confidence 457889999999988776552 223578999999998776554 33332 4699999999999962 24789
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
|+|++.+-...+. .-.+.|-+.-+.+.|||+|+.+=+..
T Consensus 441 DI~VSELLGSFGD--NELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 441 DIIVSELLGSFGD--NELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred cchHHHhhccccC--ccCCHHHHHHHHhhcCCCceEccchh
Confidence 9999754433322 12356889999999999999886543
No 250
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0018 Score=63.74 Aligned_cols=122 Identities=13% Similarity=0.126 Sum_probs=80.2
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC---CCCCc
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV---PEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~---~~~~f 201 (319)
+..+-+||+.||||.++..++++. .+|.+||++++.++-|+++...+ +-.+.+|++|-+.+.+... .-.+=
T Consensus 382 ~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~N----gisNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQIN----GISNATFIVGQAEDLFPSLLTPCCDSE 455 (534)
T ss_pred CCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhc----CccceeeeecchhhccchhcccCCCCC
Confidence 455889999999999999999874 78999999999999999997765 3468999999555544322 11234
Q ss_pred c-EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 202 D-AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 202 D-vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
+ ++|+|++..-. ...+++.+.+.-++-=.+.+. +++. ...+++...++..+
T Consensus 456 ~~v~iiDPpR~Gl------h~~~ik~l~~~~~~~rlvyvS-Cn~~---t~ar~v~~lc~~~~ 507 (534)
T KOG2187|consen 456 TLVAIIDPPRKGL------HMKVIKALRAYKNPRRLVYVS-CNPH---TAARNVIDLCSSPK 507 (534)
T ss_pred ceEEEECCCcccc------cHHHHHHHHhccCccceEEEE-cCHH---HhhhhHHHhhcCcc
Confidence 5 66777665322 235666665554455544443 3331 11344555555444
No 251
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.00061 Score=57.56 Aligned_cols=126 Identities=10% Similarity=0.092 Sum_probs=74.1
Q ss_pred CceeeEeeccccHH-HHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 127 PKKVLVIGGGDGGV-LREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 127 ~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+++||++|+|--++ +..++..-+...|...|-+++.++..++-...+ ....-.++.+..-+...-..+....+||.|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n-~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN-MASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc-cccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 57999999996444 455566667789999999999988777653322 0011123333322222111112246899999
Q ss_pred E-cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhh
Q 020933 206 V-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQI 261 (319)
Q Consensus 206 ~-D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 261 (319)
+ |...-. -+.....+.++..|+|.|.-++.++. +.+.++.+.+.+..+
T Consensus 109 aADClFfd-----E~h~sLvdtIk~lL~p~g~Al~fsPR---Rg~sL~kF~de~~~~ 157 (201)
T KOG3201|consen 109 AADCLFFD-----EHHESLVDTIKSLLRPSGRALLFSPR---RGQSLQKFLDEVGTV 157 (201)
T ss_pred eccchhHH-----HHHHHHHHHHHHHhCcccceeEecCc---ccchHHHHHHHHHhc
Confidence 5 332110 11346788889999999987665432 234445555554443
No 252
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.02 Score=50.24 Aligned_cols=122 Identities=21% Similarity=0.220 Sum_probs=85.1
Q ss_pred CCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHH----HHHhccccccCCCCCCCeEEEEcChHHHHHhC-CC
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVD----VSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PE 198 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~----~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~ 198 (319)
.....+||=||..+|+....++.--+...|.+||.++.+.. +|++ .+|+--+.+|++.--+.. --
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~----------R~Ni~PIL~DA~~P~~Y~~~V 143 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK----------RPNIIPILEDARKPEKYRHLV 143 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh----------CCCceeeecccCCcHHhhhhc
Confidence 34678999999999999999988766678999999987654 3433 357778888986532211 02
Q ss_pred CCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEE--EEecCCcc---cChHHHHHHHHHHHhh
Q 020933 199 GTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVV--STQAESIW---LHMHIIEDIVANCRQI 261 (319)
Q Consensus 199 ~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~l--v~~~~~~~---~~~~~~~~~~~~l~~~ 261 (319)
+..|+|+.|...|.. ..-+...+..-||+||.+ ++-+.|.- ...+.+++.++.+++.
T Consensus 144 e~VDviy~DVAQp~Q------a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~ 205 (231)
T COG1889 144 EKVDVIYQDVAQPNQ------AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEG 205 (231)
T ss_pred ccccEEEEecCCchH------HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhc
Confidence 569999999887654 234567778889999944 44443322 2234677677777655
No 253
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.11 E-value=0.0032 Score=60.68 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=94.3
Q ss_pred CCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.+.||||+++.-|+=+.+++.. .....|.+-|.+..-+...+.++..+ | -.+..+.+.|+++|....-.++||-|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl--G--v~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL--G--VTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh--C--CCceEEEccCcccccccccCccccee
Confidence 3579999999999988777663 23457999999999999999998877 3 35788889999987532213489999
Q ss_pred EEcCCCCC---CC-cc--------------ccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 205 IVDSSDPI---GP-AQ--------------ELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 205 i~D~~~~~---~~-~~--------------~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
++|++..- .. +. .-+.++.|....+.+++||+||..+++.. .+.-+.+++.+-+-|
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~--~~ENE~vV~yaL~K~ 390 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT--VEENEAVVDYALKKR 390 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc--hhhhHHHHHHHHHhC
Confidence 99987532 10 00 01245678888899999999999887753 233455666555556
No 254
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.11 E-value=0.0051 Score=56.96 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=61.2
Q ss_pred CCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh-CCCCCccE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~-~~~~~fDv 203 (319)
+|++|||+|+|.|..+..+... ....++++||.++.++++++.-+.... ....... ..+ +... .+-...|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~---~~~~~~~-~~~---~~~~~~~~~~~DL 105 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP---NNRNAEW-RRV---LYRDFLPFPPDDL 105 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc---ccccchh-hhh---hhcccccCCCCcE
Confidence 6889999999999877666553 246789999999999999998765431 1111111 111 1111 11234599
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|++.-.-..-+. -...++++.+.+.+++ +|++-
T Consensus 106 vi~s~~L~EL~~--~~r~~lv~~LW~~~~~--~LVlV 138 (274)
T PF09243_consen 106 VIASYVLNELPS--AARAELVRSLWNKTAP--VLVLV 138 (274)
T ss_pred EEEehhhhcCCc--hHHHHHHHHHHHhccC--cEEEE
Confidence 996332221111 1134667777666665 66554
No 255
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.10 E-value=0.018 Score=53.34 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=89.3
Q ss_pred eeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcC
Q 020933 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDS 208 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~ 208 (319)
+|+++.||.|++...+.+.. ...+.++|+|+..++..+++++.. ++++|..++........+|+|+.++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhcCCCCCEEEeCC
Confidence 68999999999988887763 567899999999999999987531 5567766654321035699999876
Q ss_pred CCCCC-C---------ccccchHHHHHHHHHhcCCCcEEEEecCCccc--ChHHHHHHHHHHHhhcCCceeEeEEe----
Q 020933 209 SDPIG-P---------AQELFEKPFFESVAKALRPGGVVSTQAESIWL--HMHIIEDIVANCRQIFKGSVNYAWTT---- 272 (319)
Q Consensus 209 ~~~~~-~---------~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~--~~~~~~~~~~~l~~~F~~~v~~~~~~---- 272 (319)
+.... . +..-...++++ +.+.++|.=+++=|+..... ....+..+.+.+++.- ..+.+....
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L~~~~~~-~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~G-Y~~~~~~l~a~~~ 148 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTLFFEIIR-ILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELG-YNVYWKLLNASDY 148 (275)
T ss_pred CChhhhHHhhcCCCCCchHHHHHHHHH-HHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCC-cEEEEEEEEHHHc
Confidence 54211 0 11101224444 34456888666655543322 2345666777766531 233333222
Q ss_pred -ecccCCCeeEEEEcCCC
Q 020933 273 -VPTYPRTFLPSCSAVNS 289 (319)
Q Consensus 273 -vP~~~~g~~~~~S~~~~ 289 (319)
+|......++++.+++.
T Consensus 149 GvPQ~R~R~~~ia~~~~~ 166 (275)
T cd00315 149 GVPQNRERVFIIGIRKDL 166 (275)
T ss_pred CCCCCCcEEEEEEEeCCC
Confidence 34433334488887643
No 256
>PRK11524 putative methyltransferase; Provisional
Probab=97.08 E-value=0.0034 Score=58.31 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=47.5
Q ss_pred CCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCc-----cc-------cchHHHHHHHHHhcCCCcEEEEec
Q 020933 178 EDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPA-----QE-------LFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 178 ~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~-----~~-------l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
...+.+++++|+.++++..++++||+|++|++...... .. .+..+++..+.++|||||.+++..
T Consensus 5 ~~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 5 GNEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred cCCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 34566899999999987776789999999987532110 00 112468899999999999999864
No 257
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.06 E-value=0.0002 Score=62.71 Aligned_cols=93 Identities=19% Similarity=0.288 Sum_probs=64.9
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..+.++||||+|+|-++..++-+. ++|.+.|++..|+...++. +.+++. ..++++. +=+||+|
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk-----------~ynVl~--~~ew~~t--~~k~dli 173 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKK-----------NYNVLT--EIEWLQT--DVKLDLI 173 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhc-----------CCceee--ehhhhhc--CceeehH
Confidence 357899999999999999988765 6799999999999876653 222221 2345542 5679999
Q ss_pred EE-cCCCCCCCccccchHHHHHHHHHhcCC-CcEEEE
Q 020933 205 IV-DSSDPIGPAQELFEKPFFESVAKALRP-GGVVST 239 (319)
Q Consensus 205 i~-D~~~~~~~~~~l~~~~f~~~~~~~Lkp-gG~lv~ 239 (319)
.+ +.-+-... ....++.+..+|+| +|.+++
T Consensus 174 ~clNlLDRc~~-----p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 174 LCLNLLDRCFD-----PFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHHHhhcC-----hHHHHHHHHHHhccCCCcEEE
Confidence 86 22221111 23578999999999 786654
No 258
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.97 E-value=0.006 Score=58.38 Aligned_cols=98 Identities=20% Similarity=0.223 Sum_probs=67.9
Q ss_pred CceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEc-ChHHHHHhC-CCCCccE
Q 020933 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG-DGVAFLKAV-PEGTYDA 203 (319)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~-D~~~~l~~~-~~~~fDv 203 (319)
+.+|+++|+|. |.++..+++..+..+|+++|+++.-+++|++++..- .+..... |....+... ....+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-------~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-------VVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-------EeecCccccHHHHHHHHhCCCCCCE
Confidence 34899999997 555677788778899999999999999999966431 1111111 333333222 2347999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|-- .. ....++.+.++++++|.+++..
T Consensus 242 vie~-~G---------~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 242 VIEA-VG---------SPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred EEEC-CC---------CHHHHHHHHHHhcCCCEEEEEe
Confidence 8832 22 2357899999999999998765
No 259
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.93 E-value=0.0057 Score=56.08 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=61.8
Q ss_pred CCceeeEeeccc--cHHHHHHHh-cCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH---HHhC-CC
Q 020933 126 NPKKVLVIGGGD--GGVLREVSR-HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF---LKAV-PE 198 (319)
Q Consensus 126 ~~~~VL~IG~G~--G~~~~~l~~-~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~---l~~~-~~ 198 (319)
.-+..||||||- -....++++ ..|..+|+.||.||.++..++.-+... ...+..++.+|.++- +... -.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~----~~g~t~~v~aD~r~p~~iL~~p~~~ 143 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN----PRGRTAYVQADLRDPEAILAHPEVR 143 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-----TTSEEEEEE--TT-HHHHHCSHHHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC----CCccEEEEeCCCCCHHHHhcCHHHH
Confidence 346899999994 446788876 357899999999999999999887643 112389999998763 2110 01
Q ss_pred CCcc------EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 199 GTYD------AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 199 ~~fD------vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+-+| ++++... +..+.. -.-...++.+...|.||..|++..
T Consensus 144 ~~lD~~rPVavll~~vL-h~v~D~-~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 144 GLLDFDRPVAVLLVAVL-HFVPDD-DDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp CC--TTS--EEEECT-G-GGS-CG-CTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred hcCCCCCCeeeeeeeee-ccCCCc-cCHHHHHHHHHHhCCCCceEEEEe
Confidence 2233 3333221 111111 113578999999999999999874
No 260
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.91 E-value=0.0015 Score=56.94 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=69.1
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+++|||+|+|+|..+...++.. ...|+..|++|..++..+-+...+ .-.+.+...|..- .+..||+|+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~an-----gv~i~~~~~d~~g-----~~~~~Dl~L 147 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAAN-----GVSILFTHADLIG-----SPPAFDLLL 147 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhc-----cceeEEeeccccC-----CCcceeEEE
Confidence 47899999999999999888874 578999999999888887776554 3467788777443 267899998
Q ss_pred E-cCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 206 V-DSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 206 ~-D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
. |.+.... . -...+. +++.|+..|.-++
T Consensus 148 agDlfy~~~--~---a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 148 AGDLFYNHT--E---ADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred eeceecCch--H---HHHHHH-HHHHHHhCCCEEE
Confidence 5 4432111 1 112333 6777788887665
No 261
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.91 E-value=0.0033 Score=58.94 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=61.1
Q ss_pred HHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH
Q 020933 113 QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF 192 (319)
Q Consensus 113 ~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~ 192 (319)
.|.+..+. ..+...++|.=.|.|+-+..+++..+..+++++|.|+.+++.+++.+... ..|+.+++++..++
T Consensus 10 ~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 10 KEVLEALN---PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNL 81 (310)
T ss_dssp HHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGH
T ss_pred HHHHHhhC---cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHH
Confidence 34555432 23456899999999999999998755689999999999999999988753 46999999987654
Q ss_pred ---HHhC-CCCCccEEEEcC
Q 020933 193 ---LKAV-PEGTYDAVIVDS 208 (319)
Q Consensus 193 ---l~~~-~~~~fDvIi~D~ 208 (319)
+... ...++|.|+.|+
T Consensus 82 ~~~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 82 DEYLKELNGINKVDGILFDL 101 (310)
T ss_dssp HHHHHHTTTTS-EEEEEEE-
T ss_pred HHHHHHccCCCccCEEEEcc
Confidence 3333 346899999865
No 262
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.0089 Score=53.35 Aligned_cols=119 Identities=21% Similarity=0.228 Sum_probs=78.2
Q ss_pred CCceeeEeeccccHHHHHHHhc-----C-CCc---eEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH-----
Q 020933 126 NPKKVLVIGGGDGGVLREVSRH-----S-SVE---KIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA----- 191 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~-----~-~~~---~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~----- 191 (319)
.-++|.||++.-|..+..+.+. . ..+ .|++||+.+++ .-+.+.-+++|...
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma---------------PI~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA---------------PIEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC---------------ccCceEEeecccCCHhHHH
Confidence 3479999999999988777663 1 112 39999997764 12467777788642
Q ss_pred -HHHhCCCCCccEEEEcCCC-CCCCc--cccc----hHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcC
Q 020933 192 -FLKAVPEGTYDAVIVDSSD-PIGPA--QELF----EKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFK 263 (319)
Q Consensus 192 -~l~~~~~~~fDvIi~D~~~-~~~~~--~~l~----~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~ 263 (319)
.++.+..++-|+|++|... ..+.. .+.. ....|.....+|||||.||. .+++......+...++..|+
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa----KifRg~~tslLysql~~ff~ 181 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA----KIFRGRDTSLLYSQLRKFFK 181 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh----hhhccCchHHHHHHHHHHhh
Confidence 3444445789999998653 22211 1111 12345555789999999996 34555555667788888885
No 263
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.84 E-value=0.0028 Score=52.57 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=54.3
Q ss_pred CCCceeeEeeccccHHHHHHHh-----cCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSR-----HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEG 199 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~-----~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~ 199 (319)
.+...|+|+|+|-|.+++.++. . +..+|++||.++..++.++++.......+ ..++++..++...... ..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~ 98 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDL-EKRLSFIQGDIADESS---SD 98 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchh-hccchhhccchhhhcc---cC
Confidence 4567999999999999999988 5 46799999999999999988765542112 2356666665443321 34
Q ss_pred CccEEE
Q 020933 200 TYDAVI 205 (319)
Q Consensus 200 ~fDvIi 205 (319)
..++++
T Consensus 99 ~~~~~v 104 (141)
T PF13679_consen 99 PPDILV 104 (141)
T ss_pred CCeEEE
Confidence 556665
No 264
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.77 E-value=0.0067 Score=50.33 Aligned_cols=87 Identities=24% Similarity=0.416 Sum_probs=57.9
Q ss_pred eEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCC-CCCC----ccccchHHHHHH
Q 020933 152 KIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSD-PIGP----AQELFEKPFFES 226 (319)
Q Consensus 152 ~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~-~~~~----~~~l~~~~f~~~ 226 (319)
+|.+.||.++.++..++.+... +.. .+++++...=....+..+.++.|+++.++-. |-+. ...-.+...++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~--~~~-~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA--GLE-DRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT--T-G-SGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc--CCC-CcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 5889999999999999998765 222 3899998765554433323489999986532 2221 122335678999
Q ss_pred HHHhcCCCcEEEEec
Q 020933 227 VAKALRPGGVVSTQA 241 (319)
Q Consensus 227 ~~~~LkpgG~lv~~~ 241 (319)
+.++|+|||++++..
T Consensus 78 al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 78 ALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHEEEEEEEEEEE
T ss_pred HHHhhccCCEEEEEE
Confidence 999999999999875
No 265
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.74 E-value=0.0057 Score=55.55 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=57.5
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
+....|-|+|||.+-++. .. ..+|...|+-+ .+-+++..|.++... ++++.|++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a-------------------~~~~V~~cDm~~vPl--~d~svDva 232 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA-------------------VNERVIACDMRNVPL--EDESVDVA 232 (325)
T ss_pred cCceEEEecccchhhhhh---cc--ccceeeeeeec-------------------CCCceeeccccCCcC--ccCcccEE
Confidence 345679999999998775 11 13466666521 234566778777432 37899999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+..++--... ..+|++++.|+|++||.+.+-
T Consensus 233 V~CLSLMgtn-----~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 233 VFCLSLMGTN-----LADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred EeeHhhhccc-----HHHHHHHHHHHhccCceEEEE
Confidence 8755431111 458999999999999998764
No 266
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.65 E-value=0.012 Score=54.62 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=66.9
Q ss_pred HHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCC-CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH
Q 020933 113 QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA 191 (319)
Q Consensus 113 ~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~ 191 (319)
+|.+..+. .......+|.=.|.|+-++.+++..+ ..+++++|.||.+++.|++.+..+ ++|+.++++....
T Consensus 13 ~E~i~~L~---~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~ 84 (314)
T COG0275 13 NEVVELLA---PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHhcc---cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHH
Confidence 45555432 22447899999999999999988644 567999999999999999988754 4699999998766
Q ss_pred HHHhC---CCCCccEEEEcC
Q 020933 192 FLKAV---PEGTYDAVIVDS 208 (319)
Q Consensus 192 ~l~~~---~~~~fDvIi~D~ 208 (319)
+.... ..+++|-|+.|+
T Consensus 85 l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 85 LAEALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHHhcCCCceeEEEEec
Confidence 54332 246899999865
No 267
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.65 E-value=0.011 Score=55.33 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=45.8
Q ss_pred CceeeEeeccccHHH-HHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcCh----HHHHHhCCCCCc
Q 020933 127 PKKVLVIGGGDGGVL-REVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG----VAFLKAVPEGTY 201 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~----~~~l~~~~~~~f 201 (319)
..++||||+|...+= ...++.+ ..++++.|||+..++.|+++...+. .+ ..+++++...- ...+.. ..+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~-~L-~~~I~l~~~~~~~~i~~~i~~-~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNP-NL-ESRIELRKQKNPDNIFDGIIQ-PNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT--T--TTTEEEEE--ST-SSTTTSTT---S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhcc-cc-ccceEEEEcCCccccchhhhc-cccee
Confidence 468999999987653 3333433 4799999999999999999986541 23 35888876532 222222 24689
Q ss_pred cEEEEcCCCC
Q 020933 202 DAVIVDSSDP 211 (319)
Q Consensus 202 DvIi~D~~~~ 211 (319)
|+.+|+++..
T Consensus 179 dftmCNPPFy 188 (299)
T PF05971_consen 179 DFTMCNPPFY 188 (299)
T ss_dssp EEEEE-----
T ss_pred eEEecCCccc
Confidence 9999987643
No 268
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.61 E-value=0.0062 Score=55.21 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=54.3
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
+.+.+|+|||||---++.-.....+...+.++|||..+++...+++... ..+.++.+.|...-. +....|+.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~~---~~~~~Dla 175 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSDP---PKEPADLA 175 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTSH---TTSEESEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeeccC---CCCCcchh
Confidence 4588999999998888777666666679999999999999999998765 367888888854432 36779998
Q ss_pred EE
Q 020933 205 IV 206 (319)
Q Consensus 205 i~ 206 (319)
++
T Consensus 176 Ll 177 (251)
T PF07091_consen 176 LL 177 (251)
T ss_dssp EE
T ss_pred hH
Confidence 85
No 269
>PRK13699 putative methylase; Provisional
Probab=96.61 E-value=0.0041 Score=55.99 Aligned_cols=59 Identities=12% Similarity=0.314 Sum_probs=44.9
Q ss_pred eEEEEcChHHHHHhCCCCCccEEEEcCCCCCCC----c----cc---cchHHHHHHHHHhcCCCcEEEEe
Q 020933 182 VTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGP----A----QE---LFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 182 v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~----~----~~---l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
.+++++|+.+.++..+++++|+||.|++...+. . .. -+..+++++++|+|||||.+++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 378899999999888889999999998764210 0 00 12346789999999999998864
No 270
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.013 Score=52.65 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=68.3
Q ss_pred HHHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEc-ChHH
Q 020933 113 QEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG-DGVA 191 (319)
Q Consensus 113 ~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~-D~~~ 191 (319)
...+.+.. ...+.+.+||||.-||+++..+++. +..+|.+||..-.-+..--+ .++|+.++.. +++.
T Consensus 68 ~~ale~F~--l~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR---------~d~rV~~~E~tN~r~ 135 (245)
T COG1189 68 EKALEEFE--LDVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLR---------NDPRVIVLERTNVRY 135 (245)
T ss_pred HHHHHhcC--cCCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHh---------cCCcEEEEecCChhh
Confidence 34455533 2357789999999999999999988 47899999987654432211 3577776654 3333
Q ss_pred HHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 192 FLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 192 ~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
.-...-.+..|+|++|.+.-. ....+-.+...|+|+|.++.
T Consensus 136 l~~~~~~~~~d~~v~DvSFIS-------L~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 136 LTPEDFTEKPDLIVIDVSFIS-------LKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CCHHHcccCCCeEEEEeehhh-------HHHHHHHHHHhcCCCceEEE
Confidence 221111347899999987521 22345555666666665543
No 271
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.54 E-value=0.0026 Score=57.24 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=51.4
Q ss_pred ceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCC-----CCeEEEEcChHHHHHhCCCCCcc
Q 020933 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFED-----PRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~-----~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
.+|||.=+|-|.=+..++..+ .+|+++|-+|-+..+.+.-+.......+. .|++++++|..+|+. .++++||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHSS--S
T ss_pred CEEEECCCcchHHHHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcCCCCC
Confidence 489999999999888887663 58999999999988877544332111111 489999999999997 4478999
Q ss_pred EEEEcCCCCC
Q 020933 203 AVIVDSSDPI 212 (319)
Q Consensus 203 vIi~D~~~~~ 212 (319)
+|.+|+-.+.
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999986654
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.44 E-value=0.025 Score=53.74 Aligned_cols=94 Identities=23% Similarity=0.275 Sum_probs=64.7
Q ss_pred CCCceeeEeecc-ccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.+.++|+++|.| -|..+.++++... .+|++++++++-.+.|++.-.. .++..-..+.++.. .+.||+
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd----------~~i~~~~~~~~~~~-~~~~d~ 232 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD----------HVINSSDSDALEAV-KEIADA 232 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc----------EEEEcCCchhhHHh-HhhCcE
Confidence 356899999987 3556777888655 8999999999999999986321 22221111223222 234999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
||.-.. + .-+....+.|+++|.+++..
T Consensus 233 ii~tv~-~----------~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 233 IIDTVG-P----------ATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EEECCC-h----------hhHHHHHHHHhcCCEEEEEC
Confidence 995544 1 34778888999999999865
No 273
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.40 E-value=0.018 Score=53.93 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=66.0
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCccE
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fDv 203 (319)
.+.+||++|+|. |..+..+++..+..+|+.+|+++.-+++||+ |..-.-. ...+-. ...+..+.++.. .+..+|+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~-~~~~~~-~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTD-PSSHKS-SPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEe-eccccc-cHHHHHHHHHhhccccCCCe
Confidence 467999999996 6566667887888999999999999999999 4321000 000111 123333444332 2356898
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
.|-- +. ...-++.....++.+|.+++.
T Consensus 246 ~~dC-sG---------~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 246 TFDC-SG---------AEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred EEEc-cC---------chHHHHHHHHHhccCCEEEEe
Confidence 8732 21 123477778899999996654
No 274
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.39 E-value=0.017 Score=56.79 Aligned_cols=105 Identities=20% Similarity=0.276 Sum_probs=74.5
Q ss_pred eeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEE--
Q 020933 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV-- 206 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~-- 206 (319)
++|.+|||.-.+...+-+- +...|+.+|+|+.+++........ ..+-.++...|..... +++++||+||.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~-----~~~~~~~~~~d~~~l~--fedESFdiVIdkG 122 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAK-----ERPEMQMVEMDMDQLV--FEDESFDIVIDKG 122 (482)
T ss_pred eeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcccc-----CCcceEEEEecchhcc--CCCcceeEEEecC
Confidence 8999999999887777665 467899999999999987765432 3567889999877653 34789999986
Q ss_pred --cCCCCCCCc-c-ccchHHHHHHHHHhcCCCcEEEEec
Q 020933 207 --DSSDPIGPA-Q-ELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 207 --D~~~~~~~~-~-~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|.......+ . .......+..+.++|++||+++.-+
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 222211110 0 0123356889999999999876543
No 275
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.0049 Score=60.52 Aligned_cols=106 Identities=17% Similarity=0.232 Sum_probs=83.8
Q ss_pred CCCceeeEeeccccHHHHHHHh-cCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC--CCCCc
Q 020933 125 PNPKKVLVIGGGDGGVLREVSR-HSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~--~~~~f 201 (319)
.++.+|||.=+++|.-+...++ .+++.+|++-|.++..++..+++...+ + ....++....|+...+-.. ....|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N--~-v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN--G-VEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc--C-chhhcccccchHHHHHHhcccccccc
Confidence 3567999998899987766665 466789999999999999999987654 1 2357889999998776443 23789
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+|=+|++... ..|++.+.+.++.||+|++.+
T Consensus 185 DvIDLDPyGs~--------s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLDPYGSP--------SPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecCCCCCc--------cHHHHHHHHHhhcCCEEEEEe
Confidence 99998876532 259999999999999999875
No 276
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.30 E-value=0.062 Score=48.45 Aligned_cols=121 Identities=18% Similarity=0.201 Sum_probs=79.2
Q ss_pred CCCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChH----HHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-C
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKM----VVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-P 197 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~----vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~ 197 (319)
.+...+||=||+++|.....+..- .+..-|.+||.++. ++..|++. +|+--++.|++.--+.. -
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR----------tNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR----------TNIIPIIEDARHPAKYRML 223 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc----------CCceeeeccCCCchheeee
Confidence 456789999999999988888764 45567899999863 55555543 57777888987543211 1
Q ss_pred CCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec--CCc---ccChHHHHHHHHHHHh
Q 020933 198 EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA--ESI---WLHMHIIEDIVANCRQ 260 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~--~~~---~~~~~~~~~~~~~l~~ 260 (319)
-.-.|+|+.|...|... +-..-...-.||+||-+++.. +|. ......+....+.+++
T Consensus 224 VgmVDvIFaDvaqpdq~------RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqe 285 (317)
T KOG1596|consen 224 VGMVDVIFADVAQPDQA------RIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQE 285 (317)
T ss_pred eeeEEEEeccCCCchhh------hhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHH
Confidence 24689999998876542 112223455799999888764 222 2233456666666663
No 277
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.29 E-value=0.026 Score=53.44 Aligned_cols=97 Identities=16% Similarity=0.250 Sum_probs=61.6
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..++||++|+|. |..+.++++..+..+|++++.+++-++.+++.-... -+.....|..+.... .+.+|+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~-------vi~~~~~~~~~~~~~--~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK-------LVNPQNDDLDHYKAE--KGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE-------EecCCcccHHHHhcc--CCCCCEE
Confidence 467999998753 445566777766667999999999999998742110 011111222333321 2459998
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
| |... ....++.+.+.|+++|.++.-.
T Consensus 240 i-d~~G---------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 F-EVSG---------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred E-ECCC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 7 3332 1245778889999999998754
No 278
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.25 E-value=0.0056 Score=58.85 Aligned_cols=104 Identities=15% Similarity=0.215 Sum_probs=73.0
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+.+++++|||-|...+++.... .+.+++++.++.-+..+....... ..+ .+..++..|..+-. .+++.||.+-
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~--~l~-~k~~~~~~~~~~~~--fedn~fd~v~ 183 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA--YLD-NKCNFVVADFGKMP--FEDNTFDGVR 183 (364)
T ss_pred ccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH--Hhh-hhcceehhhhhcCC--CCccccCcEE
Confidence 34489999999999999998874 467899999988777666554332 222 34555777744432 2478899987
Q ss_pred E-cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 206 V-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 206 ~-D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+ |....... ....|++++++++|||++++-
T Consensus 184 ~ld~~~~~~~-----~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 184 FLEVVCHAPD-----LEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEeecccCCc-----HHHHHHHHhcccCCCceEEeH
Confidence 4 44333222 346899999999999999863
No 279
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.17 E-value=0.02 Score=52.50 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=70.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+++|+.+|--+ ..+..++-..-.++|.+||||+..++.-.+...+. +-.+++.+.-|.++-+.+.-.++||+++
T Consensus 152 ~gK~I~vvGDDD-Ltsia~aLt~mpk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVGDDD-LTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEcCch-hhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCeee
Confidence 467899999443 33344333222378999999999999988877655 3346888888988765432257999999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCC---cEEEEe
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPG---GVVSTQ 240 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~Lkpg---G~lv~~ 240 (319)
.|++..... -+.|+..=-..||.- |++-+.
T Consensus 227 TDPpeTi~a-----lk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 227 TDPPETIKA-----LKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred cCchhhHHH-----HHHHHhccHHHhcCCCccceEeee
Confidence 887653221 234555556678776 677664
No 280
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.11 E-value=0.042 Score=55.15 Aligned_cols=110 Identities=20% Similarity=0.282 Sum_probs=64.0
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhcccccc-CCCCCCC------eEEEEcChH----HHH
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-VGFEDPR------VTLHIGDGV----AFL 193 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-~~~~~~~------v~v~~~D~~----~~l 193 (319)
.+.+|+++|+|. |..+...++..+. +|+++|.+++.++.+++.=.... ....+.. ++-...|.. +.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 578999999997 5456667776654 79999999999999988422100 0000000 000111110 111
Q ss_pred HhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 194 KAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 194 ~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
.+. -..+|+||.-...+..+... -+.+.+.+.+||||+++.-+
T Consensus 243 ~~~-~~gaDVVIetag~pg~~aP~----lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 243 AEQ-AKEVDIIITTALIPGKPAPK----LITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred Hhc-cCCCCEEEECCCCCcccCcc----hHHHHHHHhcCCCCEEEEEc
Confidence 111 14699999655444332222 12478888999999987553
No 281
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.11 E-value=0.041 Score=48.81 Aligned_cols=125 Identities=17% Similarity=0.140 Sum_probs=73.2
Q ss_pred HHHHHHHhccccCCCCCceeeEeeccccHHHHHH--HhcCCCceEEEEECChHHHHHHHhcccccc--------------
Q 020933 111 AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREV--SRHSSVEKIDICEIDKMVVDVSKQFFPDVA-------------- 174 (319)
Q Consensus 111 ~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l--~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-------------- 174 (319)
.|++.+.++. -..|-.+.|-+||+|+++.-+ ++......|.+-|||++++++|++++...-
T Consensus 39 i~qR~l~~l~---~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~ 115 (246)
T PF11599_consen 39 IFQRALHYLE---GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELREL 115 (246)
T ss_dssp HHHHHHCTSS---S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhc---CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHH
Confidence 4566655432 246779999999999987665 444456789999999999999999875320
Q ss_pred -------------------------CCCCCCCeEEEEcChHHHHH--hC-CCCCccEEEEcCCCCCCCc-----cccchH
Q 020933 175 -------------------------VGFEDPRVTLHIGDGVAFLK--AV-PEGTYDAVIVDSSDPIGPA-----QELFEK 221 (319)
Q Consensus 175 -------------------------~~~~~~~v~v~~~D~~~~l~--~~-~~~~fDvIi~D~~~~~~~~-----~~l~~~ 221 (319)
.+ ......+...|.++.-. .. ....-|+||.|.+...... ..--..
T Consensus 116 ~e~~~kps~~eAl~sA~RL~~~l~~~g-~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~ 194 (246)
T PF11599_consen 116 YEQYGKPSHAEALESADRLRERLAAEG-GDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVA 194 (246)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTT-SS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhcC-CCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHH
Confidence 01 12346788888876422 11 1344699999987643211 111245
Q ss_pred HHHHHHHHhcCCCcEEEE
Q 020933 222 PFFESVAKALRPGGVVST 239 (319)
Q Consensus 222 ~f~~~~~~~LkpgG~lv~ 239 (319)
.+++.+..+|-+++++++
T Consensus 195 ~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 195 QMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHCCS-TT-EEEE
T ss_pred HHHHHHHhhCCCCcEEEE
Confidence 799999999976677777
No 282
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.94 E-value=0.0081 Score=56.57 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=76.2
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHH-------HhccccccCCCCCCCeEEEEcChHHHHHhCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVS-------KQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP 197 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a-------k~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~ 197 (319)
.+++-|+|--.|||+++...++.+ .-|.+.|||-.++... +.+|... +..+--+.+..+|...-.-..
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQY--g~~~~fldvl~~D~sn~~~rs- 281 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQY--GSSSQFLDVLTADFSNPPLRS- 281 (421)
T ss_pred CCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHHHh--CCcchhhheeeecccCcchhh-
Confidence 467789999999999998888774 6799999999988843 3344433 222334678888865433222
Q ss_pred CCCccEEEEcCCCCCC------------------------Cccccc-----hHHHHHHHHHhcCCCcEEEEec
Q 020933 198 EGTYDAVIVDSSDPIG------------------------PAQELF-----EKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~------------------------~~~~l~-----~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
...||.||+|++.... |....+ --+.+.-.+++|..||.++++.
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 5789999999875331 101111 1234566689999999999864
No 283
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.85 E-value=0.018 Score=49.27 Aligned_cols=110 Identities=17% Similarity=0.255 Sum_probs=67.3
Q ss_pred eEeeccccHHHHHHHhcCC-CceEEEEECChHHHHHHHhccc--cccCCCCCCCeEEE-EcChHHHHHhC--CCCCccEE
Q 020933 131 LVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFP--DVAVGFEDPRVTLH-IGDGVAFLKAV--PEGTYDAV 204 (319)
Q Consensus 131 L~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ak~~~~--~~~~~~~~~~v~v~-~~D~~~~l~~~--~~~~fDvI 204 (319)
|.+|=|+-.++..|+++.+ ..+|++.-.|.. -++.++|-. .+...+....++++ ..|+.+.-+.. ...+||.|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~-~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSE-EELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCch-HHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEE
Confidence 6789999999999998654 667777766654 222333210 11111233444444 34666544332 35789999
Q ss_pred EEcCCCCCCC----c-----cccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGP----A-----QELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~----~-----~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|.+.+..-.. . ....-..||+.+.++|+++|.+.+..
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9877653311 0 11223579999999999999887764
No 284
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.81 E-value=0.049 Score=54.61 Aligned_cols=122 Identities=21% Similarity=0.257 Sum_probs=77.9
Q ss_pred HHHHhccccCCCCCceeeEeeccccHHHHHHHhcCC----CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcCh
Q 020933 114 EMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSS----VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDG 189 (319)
Q Consensus 114 e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~----~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~ 189 (319)
++|+++.. +....+|+|-.||+|++.....++.. ...+.+.|+++....+|+.++-.. +.+. .+.+..+|-
T Consensus 176 ~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh--gi~~-~~~i~~~dt 250 (489)
T COG0286 176 ELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH--GIEG-DANIRHGDT 250 (489)
T ss_pred HHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh--CCCc-ccccccccc
Confidence 45555322 23445899999999998877665421 256899999999999999886543 2222 456666664
Q ss_pred HHHHHh---CCCCCccEEEEcCCCC-C--CC-----------------c-cccchHHHHHHHHHhcCCCcEEEEe
Q 020933 190 VAFLKA---VPEGTYDAVIVDSSDP-I--GP-----------------A-QELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 190 ~~~l~~---~~~~~fDvIi~D~~~~-~--~~-----------------~-~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
..-... ...++||.|+.+++.. . .. + ..--...|++.+...|+|||...+.
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 432211 1136799999877653 1 00 0 0011257999999999998855443
No 285
>PTZ00357 methyltransferase; Provisional
Probab=95.80 E-value=0.042 Score=56.27 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=66.2
Q ss_pred eeeEeeccccHHHHHHHhc----CCCceEEEEECChHHHHHHHhc---cccccC--CCCCCCeEEEEcChHHHHHhC---
Q 020933 129 KVLVIGGGDGGVLREVSRH----SSVEKIDICEIDKMVVDVSKQF---FPDVAV--GFEDPRVTLHIGDGVAFLKAV--- 196 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~ak~~---~~~~~~--~~~~~~v~v~~~D~~~~l~~~--- 196 (319)
.|+++|+|-|-+....++. .-..+|.+||.++..+...... ...+.. ..-+.+|+++..|++.+-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999988776553 2235899999996633332222 222210 001357999999999984210
Q ss_pred ----C--CCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCC----CcE
Q 020933 197 ----P--EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRP----GGV 236 (319)
Q Consensus 197 ----~--~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~Lkp----gG~ 236 (319)
+ -+++|+||+.+-...+.. -...|-+.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDN--ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDN--ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccc--cCCHHHHHHHHHhhhhhcccccc
Confidence 0 137999997554333321 1245778888888876 776
No 286
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.55 E-value=0.11 Score=49.06 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=61.0
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
..+.+||++|+|. |..+.++++..+...|++++.+++-.+.+++.-.. .-+.....+..+..+......+|.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAM-------QTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc-------eEecCcccCHHHHHHHhcCCCCCe
Confidence 3567999998754 33455567766655688999999988888653211 011111122222222222346885
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+++|... ....+....+.|++||.+++-.
T Consensus 232 ~v~d~~G---------~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 232 LILETAG---------VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred EEEECCC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 5656543 1246788889999999988753
No 287
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.51 E-value=0.025 Score=50.25 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=64.6
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH-HHhCCCCCccEEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF-LKAVPEGTYDAVI 205 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~-l~~~~~~~fDvIi 205 (319)
+-++||||+=+......-. +.-.|+.||+++.- -.+...|..+. +...+.++||+|.
T Consensus 52 ~lrlLEVGals~~N~~s~~---~~fdvt~IDLns~~-------------------~~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS---GWFDVTRIDLNSQH-------------------PGILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCccccc---CceeeEEeecCCCC-------------------CCceeeccccCCCCCCcccceeEEE
Confidence 3699999987555443322 23459999997632 13445564433 1112357999998
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcE-----EEEecC------CcccChHHHHHHHHHH
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGV-----VSTQAE------SIWLHMHIIEDIVANC 258 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~-----lv~~~~------~~~~~~~~~~~~~~~l 258 (319)
+.+--...|.. ...-+.++.+.+.|+|+|. |++..+ +.+...+.+..+++.+
T Consensus 110 ~SLVLNfVP~p-~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~L 172 (219)
T PF11968_consen 110 LSLVLNFVPDP-KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESL 172 (219)
T ss_pred EEEEEeeCCCH-HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhC
Confidence 75543322211 1135789999999999999 766543 2334444555555443
No 288
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=95.38 E-value=0.3 Score=44.38 Aligned_cols=118 Identities=21% Similarity=0.271 Sum_probs=68.6
Q ss_pred eEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC--CCCCccEEEEcC
Q 020933 131 LVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDAVIVDS 208 (319)
Q Consensus 131 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~--~~~~fDvIi~D~ 208 (319)
|..=.|+=.++..+++. ..+.+.+|+.|.-.+..+++|.. +.+++++..|+.+-+... +..+=-+|++|+
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~------~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRR------DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--T------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhcc------CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 44556776777777765 36899999999999999988863 579999999999987654 345667899997
Q ss_pred CCCCCCccccchHHHHHHHHHhcC--CCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 209 SDPIGPAQELFEKPFFESVAKALR--PGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 209 ~~~~~~~~~l~~~~f~~~~~~~Lk--pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
+...... .....+.+.+++| +.|+++++- +.......+.+.+.+++.-
T Consensus 134 pYE~~~d----y~~v~~~l~~a~kR~~~G~~~iWY--Pi~~~~~~~~~~~~l~~~~ 183 (245)
T PF04378_consen 134 PYEQKDD----YQRVVDALAKALKRWPTGVYAIWY--PIKDRERVDRFLRALKALG 183 (245)
T ss_dssp ---STTH----HHHHHHHHHHHHHH-TTSEEEEEE--EESSHHHHHHHHHHHHHH-
T ss_pred CCCCchH----HHHHHHHHHHHHHhcCCcEEEEEe--ecccHHHHHHHHHHHHhcC
Confidence 6432211 1123334444444 689988864 4455666777888877653
No 289
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=95.34 E-value=0.24 Score=45.20 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=72.6
Q ss_pred hHHHHHHHhccc--cCCCCCceeeEeeccccH---HHHHHHh-c-CCCceEEEEECChHHHHHHHhccccccCCCCCCCe
Q 020933 110 CAYQEMITHLPL--CSIPNPKKVLVIGGGDGG---VLREVSR-H-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRV 182 (319)
Q Consensus 110 ~~Y~e~l~~l~l--~~~~~~~~VL~IG~G~G~---~~~~l~~-~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v 182 (319)
..|+++-..+.- +..|..-+||.+|+|+-- -+..+++ . +...-++-.|+.+-+ . ..-
T Consensus 43 ~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------S-Da~ 106 (299)
T PF06460_consen 43 AKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------S-DAD 106 (299)
T ss_dssp HHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----------------SSS
T ss_pred HHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------c-ccC
Confidence 356666554422 134556799999998632 1233333 2 334455556664432 1 234
Q ss_pred EEEEcChHHHHHhCCCCCccEEEEcCCCCCCC-------ccccchHHHHHHHHHhcCCCcEEEEec-CCcccChHHHHHH
Q 020933 183 TLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGP-------AQELFEKPFFESVAKALRPGGVVSTQA-ESIWLHMHIIEDI 254 (319)
Q Consensus 183 ~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~-------~~~l~~~~f~~~~~~~LkpgG~lv~~~-~~~~~~~~~~~~~ 254 (319)
..+.+|...+.. +.+||+||+|..++... ....+..-+..-++..|+-||-+++-. +..| ..+
T Consensus 107 ~~~~~Dc~t~~~---~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw-~~~----- 177 (299)
T PF06460_consen 107 QSIVGDCRTYMP---PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSW-NAQ----- 177 (299)
T ss_dssp EEEES-GGGEEE---SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS---HH-----
T ss_pred CceeccccccCC---CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccc-cHH-----
Confidence 677899888753 68999999999864321 122223334566688999999988764 4444 222
Q ss_pred HHHHHhhcCCceeEeEEeecccCCCeeEEEEc
Q 020933 255 VANCRQIFKGSVNYAWTTVPTYPRTFLPSCSA 286 (319)
Q Consensus 255 ~~~l~~~F~~~v~~~~~~vP~~~~g~~~~~S~ 286 (319)
+-.+.+.|. ....+.+.+-+-.++-+++|-.
T Consensus 178 Lyel~~~F~-~wt~FcT~VNtSSSEaFLigiN 208 (299)
T PF06460_consen 178 LYELMGYFS-WWTCFCTAVNTSSSEAFLIGIN 208 (299)
T ss_dssp HHHHHTTEE-EEEEEEEGGGTTSS-EEEEEEE
T ss_pred HHHHHhhcc-cEEEEecccCccccceeEEeee
Confidence 233445673 2333445555555565666554
No 290
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.34 E-value=0.14 Score=49.48 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=67.6
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcC-hHHHHHhC-CCCCc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD-GVAFLKAV-PEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D-~~~~l~~~-~~~~f 201 (319)
.+..+||++|+|. |..+..+++..+..+|++++.+++..+.++++... ..+.....| ..+.+... ....+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCC
Confidence 3567899999887 77778888876655799999999999999886421 112222222 33333222 23469
Q ss_pred cEEEEcCCCCC-----CCc------cccchHHHHHHHHHhcCCCcEEEEec
Q 020933 202 DAVIVDSSDPI-----GPA------QELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~-----~~~------~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+|+--..... +.. ..-.....++.+.+.|+++|.++...
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 98874321100 000 00002346788899999999998754
No 291
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.34 E-value=0.0082 Score=54.91 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=61.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCC------------C-------------C
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFE------------D-------------P 180 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~------------~-------------~ 180 (319)
++.++||||+|.-... .+....-..+|+..|..+.-++..++++..- ..++ . .
T Consensus 56 ~g~~llDiGsGPtiy~-~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ-LLSACEWFEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG-GTTGGGTEEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh-hhhHHHhhcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4678999999974332 2222222478999999999999888887653 1110 0 1
Q ss_pred CeE-EEEcChHHHHHhCC----CCCccEEEEcCCC-CCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 181 RVT-LHIGDGVAFLKAVP----EGTYDAVIVDSSD-PIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 181 ~v~-v~~~D~~~~l~~~~----~~~fDvIi~D~~~-~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
.++ ++..|..+--.-.+ ..+||+|++-.-- .......- ....++.+.++|||||.|++..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~-y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDE-YRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHH-HHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHH-HHHHHHHHHHHcCCCcEEEEEE
Confidence 122 55566543211001 2359988863221 11111111 2356888899999999998764
No 292
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.31 E-value=0.041 Score=52.11 Aligned_cols=110 Identities=20% Similarity=0.276 Sum_probs=64.4
Q ss_pred CCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCccE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fDv 203 (319)
.|++|||+|.|-|..+..+-.- +.-.+++.+|.++.+-++...-.... ...+......|...-.... ....|++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv----~t~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV----STEKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc----ccccCCCCCCccchhccCCCccceeeh
Confidence 5789999999999776665443 34567899999998777654432211 0011122222221111111 2467888
Q ss_pred EEE-cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~-D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
||+ |---+.+....+ ...++.+...+.|||.||+..
T Consensus 189 ~i~~~eLl~d~~ek~i--~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 189 AIVLDELLPDGNEKPI--QVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhhhhhccccCcchH--HHHHHHHHHhccCCCeEEEEe
Confidence 884 222233332222 237888999999999998754
No 293
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.30 E-value=0.13 Score=48.89 Aligned_cols=100 Identities=22% Similarity=0.210 Sum_probs=62.7
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCcc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fD 202 (319)
....+||+.|+|. |..+.++++..+..+|++++.+++-.+.+++. .. +.-+.....|..+.+... ....+|
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GA------THTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 3567999998653 44556677776655799999999999988764 21 111122223443434332 234699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|+ |... ....++...+.|+++|.+++-.
T Consensus 248 ~vi-d~~g---------~~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 248 VVI-DAVG---------RPETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EEE-ECCC---------CHHHHHHHHHHhccCCEEEEEC
Confidence 888 3332 1245777788999999998753
No 294
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.25 E-value=0.1 Score=48.77 Aligned_cols=87 Identities=17% Similarity=0.284 Sum_probs=56.9
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..++||++|+|. |..+.++++..+...|.++|.+++-++.++++.- . |..+. . ...+|+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~-i--------------~~~~~---~-~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV-L--------------DPEKD---P-RRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc-c--------------Chhhc---c-CCCCCEE
Confidence 456899998654 5566777887666668888998887776654310 0 10000 1 3468988
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
| |... ....++.+.+.|+++|.+++-.
T Consensus 205 i-d~~G---------~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 Y-DASG---------DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred E-ECCC---------CHHHHHHHHHhhhcCcEEEEEe
Confidence 7 3332 1245788889999999998643
No 295
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.14 E-value=0.14 Score=49.05 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=62.2
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
....+||++|+|. |..+.++++..+..+|++++.+++-.+.+++.-. +.-+.....|..+.+.....+.+|+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga-------~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA-------TATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC-------ceEeCCCchhHHHHHHHHhCCCCCE
Confidence 3467999998653 4455667776665579999999999998876411 1011111223333333322346999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
||- ... ....++...+.|+++|.++...
T Consensus 263 vid-~~G---------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 263 AFE-MAG---------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEE-CCC---------ChHHHHHHHHHHhcCCEEEEEc
Confidence 883 221 1245778888999999988653
No 296
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=95.10 E-value=0.35 Score=42.95 Aligned_cols=110 Identities=20% Similarity=0.260 Sum_probs=69.4
Q ss_pred HHHHHhccccCCCCCceeeEeeccccH----HHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcC
Q 020933 113 QEMITHLPLCSIPNPKKVLVIGGGDGG----VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD 188 (319)
Q Consensus 113 ~e~l~~l~l~~~~~~~~VL~IG~G~G~----~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D 188 (319)
.|++..++ .-.+.+.++++.++.|. ++..++.+....++++|-.++.-+...++.+... +.. ..++|+++|
T Consensus 30 aEfISAlA--AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~--~~~-~~vEfvvg~ 104 (218)
T PF07279_consen 30 AEFISALA--AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA--GLS-DVVEFVVGE 104 (218)
T ss_pred HHHHHHHh--ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc--ccc-ccceEEecC
Confidence 34454433 23467889999766443 3344444445678999999988888888877654 222 357999998
Q ss_pred h-HHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHh--cCCCcEEEE
Q 020933 189 G-VAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKA--LRPGGVVST 239 (319)
Q Consensus 189 ~-~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~--LkpgG~lv~ 239 (319)
. .+.+..+ ...|.+++|... ++|.+.+.+. +.|.|.+++
T Consensus 105 ~~e~~~~~~--~~iDF~vVDc~~----------~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 105 APEEVMPGL--KGIDFVVVDCKR----------EDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred CHHHHHhhc--cCCCEEEEeCCc----------hhHHHHHHHHhccCCCceEEE
Confidence 5 4566554 579999999863 2334333333 555676554
No 297
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.07 E-value=0.056 Score=43.34 Aligned_cols=88 Identities=18% Similarity=0.213 Sum_probs=61.6
Q ss_pred cccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCccEEEEcCCCCCCC
Q 020933 136 GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDAVIVDSSDPIGP 214 (319)
Q Consensus 136 G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fDvIi~D~~~~~~~ 214 (319)
|.|..+..++++.+ .+|++++.++.-++.++++-... -+.....|..+.++.. +...+|+||--..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~-------~~~~~~~~~~~~i~~~~~~~~~d~vid~~g----- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADH-------VIDYSDDDFVEQIRELTGGRGVDVVIDCVG----- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESE-------EEETTTSSHHHHHHHHTTTSSEEEEEESSS-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccc-------cccccccccccccccccccccceEEEEecC-----
Confidence 45788889999876 89999999999999999864221 1111112344555443 2347999884322
Q ss_pred ccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 215 AQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 215 ~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
..+.++...++|+++|.+++-.
T Consensus 68 -----~~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 68 -----SGDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp -----SHHHHHHHHHHEEEEEEEEEES
T ss_pred -----cHHHHHHHHHHhccCCEEEEEE
Confidence 2467899999999999999865
No 298
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=95.03 E-value=0.11 Score=53.41 Aligned_cols=161 Identities=15% Similarity=0.120 Sum_probs=87.4
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEE---EECChHHHHHHHhccccccCCCCCCCeEEEEcC--------h-----
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDI---CEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD--------G----- 189 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~---VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D--------~----- 189 (319)
.+...|..|-|+|+++..+++..+..+++. .|++...+.-+.-.=|..-....+.+-+++..| .
T Consensus 322 ~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~T 401 (675)
T PF14314_consen 322 KYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPET 401 (675)
T ss_pred CcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCccH
Confidence 457889999999999999999877766643 455544433222111110001122233444322 1
Q ss_pred HHHHHhC---CCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhcCCce
Q 020933 190 VAFLKAV---PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIFKGSV 266 (319)
Q Consensus 190 ~~~l~~~---~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~v 266 (319)
.+|.... ..-++|+|++|.--.............-+.+.+.|.++|.+++-+.-...- ..-..++..+...|+ .|
T Consensus 402 W~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~-~~~~~il~~lg~~F~-~V 479 (675)
T PF14314_consen 402 WKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLL-SPDYNILDLLGRYFK-SV 479 (675)
T ss_pred HHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhh-cchhhHHHHHHhhcC-ce
Confidence 2232221 245799999997643222111112233444567889999999976321111 112357777889994 56
Q ss_pred eEeEEeecc-cCCCeeEEEEcCC
Q 020933 267 NYAWTTVPT-YPRTFLPSCSAVN 288 (319)
Q Consensus 267 ~~~~~~vP~-~~~g~~~~~S~~~ 288 (319)
..+.+...+ .-+...++|.+..
T Consensus 480 ~l~qT~~SSs~TSEVYlv~~~~~ 502 (675)
T PF14314_consen 480 ELVQTQFSSSFTSEVYLVFQKLK 502 (675)
T ss_pred EEEECCCCCCCceEEEEEEeccc
Confidence 655444333 3234448887653
No 299
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.93 E-value=0.065 Score=45.45 Aligned_cols=102 Identities=24% Similarity=0.304 Sum_probs=58.4
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCe-EEEEcChHHHHHhCCCCCccEEE
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRV-TLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v-~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.++++++|...=.+-...+++ +..+|..||-++--++ .++ .+ ++ .+...|...-.+.. .++||.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA~~iltveyn~L~i~--~~~--------~d-r~ssi~p~df~~~~~~y-~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GAAKILTVEYNKLEIQ--EEF--------RD-RLSSILPVDFAKNWQKY-AGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CCceEEEEeecccccC--ccc--------cc-ccccccHHHHHHHHHHh-hccchhhh
Confidence 468899998865554445556 5678999998762211 111 11 22 22223433222333 57899987
Q ss_pred EcCC-CCCC------CccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSS-DPIG------PAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~-~~~~------~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+-.+ ++.+ |....-....+..++++||+||.|.+..
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 5221 1211 1111224567889999999999998865
No 300
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.89 E-value=0.17 Score=48.11 Aligned_cols=94 Identities=22% Similarity=0.313 Sum_probs=58.1
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEEC---ChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCc
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEI---DKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTY 201 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEi---d~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~f 201 (319)
.+.+||++|+|. |.++.++++..+. +|++++. ++.-.+.+++.-... +.....|..+ .. . ...+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~--------v~~~~~~~~~-~~-~-~~~~ 239 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATY--------VNSSKTPVAE-VK-L-VGEF 239 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE--------ecCCccchhh-hh-h-cCCC
Confidence 467999998764 5556667777654 7999986 677888887642111 1111112111 11 1 3569
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+||-- .. ....+....+.|+++|.+++-.
T Consensus 240 d~vid~-~g---------~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 240 DLIIEA-TG---------VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CEEEEC-cC---------CHHHHHHHHHHccCCcEEEEEe
Confidence 988833 21 1246788889999999988653
No 301
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.85 E-value=0.28 Score=47.37 Aligned_cols=99 Identities=20% Similarity=0.290 Sum_probs=55.5
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.+.+|++||+|. |..+...++..+ .+|+++|.+++-.+.+.+.+.. .+.....+...+.+. -..+|+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG-a~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~~~~l~~~--l~~aDvV 234 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG-ATVTILDINIDRLRQLDAEFGG--------RIHTRYSNAYEIEDA--VKRADLL 234 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHhcCc--------eeEeccCCHHHHHHH--HccCCEE
Confidence 467899999874 444444555544 4799999998877665544321 122222222222222 2468999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
|....-+......+.+.+.+ +.++|+++++-
T Consensus 235 I~a~~~~g~~~p~lit~~~l----~~mk~g~vIvD 265 (370)
T TIGR00518 235 IGAVLIPGAKAPKLVSNSLV----AQMKPGAVIVD 265 (370)
T ss_pred EEccccCCCCCCcCcCHHHH----hcCCCCCEEEE
Confidence 96543222222334455444 45788887764
No 302
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.77 E-value=0.29 Score=44.93 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=59.9
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCccE
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fDv 203 (319)
...+||++|+|. |..+..+++..+..+|++++.+++-.+.++++-... -+. ..+..+.+... ....+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~-------~i~--~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA-------LAE--PEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE-------ecC--chhhHHHHHHHhCCCCCCE
Confidence 467999998754 445556677666556999999999888888742110 000 01111222221 2346999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+- ... ....++.+.+.|+++|.++...
T Consensus 191 vid-~~G---------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALE-FSG---------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEE-CCC---------ChHHHHHHHHHhcCCCEEEEec
Confidence 883 221 1245778889999999998754
No 303
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.67 E-value=0.8 Score=42.51 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=87.4
Q ss_pred eeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh-CCCCCccEEEEc
Q 020933 129 KVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYDAVIVD 207 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~-~~~~~fDvIi~D 207 (319)
+|++|-||.|++...+.+.. ..-+.++|+|+...+.-+.+++ .+..+|..+.-.. .+. .+|+|+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccc-cceEEEec
Confidence 68999999999999988774 5678999999999999888763 6778888765432 122 59999976
Q ss_pred CCCCC-CC---------ccccchHHHHHHHHHhcCCCcEEEEecCCcccC--hHHHHHHHHHHHhhcCCceeEeEEe---
Q 020933 208 SSDPI-GP---------AQELFEKPFFESVAKALRPGGVVSTQAESIWLH--MHIIEDIVANCRQIFKGSVNYAWTT--- 272 (319)
Q Consensus 208 ~~~~~-~~---------~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~--~~~~~~~~~~l~~~F~~~v~~~~~~--- 272 (319)
++... +. ...-.-.++++.+ +.++|.-+++=|+...... ...++.+++.+.+. ...+.+....
T Consensus 69 pPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~l-GY~v~~~vlna~~ 146 (335)
T PF00145_consen 69 PPCQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPKYFLLENVPGLLSSKNGEVFKEILEELEEL-GYNVQWRVLNAAD 146 (335)
T ss_dssp ---TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHT-TEEEEEEEEEGGG
T ss_pred cCCceEeccccccccccccchhhHHHHHHH-hhccceEEEecccceeecccccccccccccccccc-ceeehhccccHhh
Confidence 55321 11 1111122444444 5678988877666544332 24567777777653 1234333322
Q ss_pred --ecccCCCeeEEEEcCCCC
Q 020933 273 --VPTYPRTFLPSCSAVNSD 290 (319)
Q Consensus 273 --vP~~~~g~~~~~S~~~~~ 290 (319)
+|......+++|+++...
T Consensus 147 yGvPQ~R~R~fivg~r~~~~ 166 (335)
T PF00145_consen 147 YGVPQNRERVFIVGIRKDLP 166 (335)
T ss_dssp GTSSBE-EEEEEEEEEGGG-
T ss_pred CCCCCceeeEEEEEECCCCC
Confidence 333222344888888543
No 304
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=94.58 E-value=0.26 Score=46.27 Aligned_cols=96 Identities=10% Similarity=0.089 Sum_probs=61.0
Q ss_pred ceeeEeec--cccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 128 KKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 128 ~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+||+.|+ |.|..+.+++++.+..+|++++.+++-.+.+++.+.. +.-+.....|..+.+.....+.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa------~~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF------DAAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC------cEEEECCCCCHHHHHHHHCCCCceEEE
Confidence 79999985 5666777788876544799999988887877664431 111111122333444333235699988
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|... . ..++.+.+.|+++|.++.-
T Consensus 230 -d~~g---------~-~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 -DNVG---------G-EISDTVISQMNENSHIILC 253 (345)
T ss_pred -ECCC---------c-HHHHHHHHHhccCCEEEEE
Confidence 3322 1 2357788899999999864
No 305
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.56 E-value=0.23 Score=44.51 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=65.7
Q ss_pred hhHHHHHHHhccccCCCCCceeeEeeccccHHHHH--HHhcCCCceEEEE--ECChHHHHHHHhccccccCCCCCCCeEE
Q 020933 109 ECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLRE--VSRHSSVEKIDIC--EIDKMVVDVSKQFFPDVAVGFEDPRVTL 184 (319)
Q Consensus 109 e~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~--l~~~~~~~~v~~V--Eid~~vi~~ak~~~~~~~~~~~~~~v~v 184 (319)
+..|.+-+.++|.....+.++||+||+|.=+.-+. |++.. .+|++| ++++++.++++. .++++
T Consensus 7 ~~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~g--A~VtVVap~i~~el~~l~~~-----------~~i~~ 73 (223)
T PRK05562 7 EDIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKG--CYVYILSKKFSKEFLDLKKY-----------GNLKL 73 (223)
T ss_pred hHHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCCCHHHHHHHhC-----------CCEEE
Confidence 34566666667776666788999999998665433 44443 567776 888888776542 46777
Q ss_pred EEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 185 HIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 185 ~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+..+...-. -..+++||.-..+ .+.-+.+++..+..|+++..+
T Consensus 74 ~~r~~~~~d----l~g~~LViaATdD----------~~vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 74 IKGNYDKEF----IKDKHLIVIATDD----------EKLNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred EeCCCChHH----hCCCcEEEECCCC----------HHHHHHHHHHHHHcCCeEEEc
Confidence 776543221 1346777755433 345555666666656666544
No 306
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.52 E-value=0.15 Score=46.52 Aligned_cols=108 Identities=18% Similarity=0.167 Sum_probs=63.9
Q ss_pred CCceeeEeeccccHHHHHH---HhcC--CCceEEEEEC--------------------------ChHHHHHHHhcccccc
Q 020933 126 NPKKVLVIGGGDGGVLREV---SRHS--SVEKIDICEI--------------------------DKMVVDVSKQFFPDVA 174 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l---~~~~--~~~~v~~VEi--------------------------d~~vi~~ak~~~~~~~ 174 (319)
-|..|+|+|+--|+.+..+ ++.. +..++.+.|- ...-.+..+++|...
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~- 152 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY- 152 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT-
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc-
Confidence 4789999999888766443 3221 2345655542 012355566666654
Q ss_pred CCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 175 VGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 175 ~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++.+++++++.|+..+-+...+.+++-++-+|..-- .+ +.+.++.++..|.|||++++.-
T Consensus 153 -gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY-es-----T~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 153 -GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY-ES-----TKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp -TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH-HH-----HHHHHHHHGGGEEEEEEEEESS
T ss_pred -CCCcccEEEECCcchhhhccCCCccEEEEEEeccch-HH-----HHHHHHHHHhhcCCCeEEEEeC
Confidence 445679999999988777654456677777664321 11 6788999999999999999964
No 307
>PHA01634 hypothetical protein
Probab=94.47 E-value=0.069 Score=43.56 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=53.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
..++|+|||++-|..+..++-. +...|+++|.++...+..++....+.. -|+.+-. + +|-.. -+.||+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI--~DK~v~~--~---eW~~~--Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNI--CDKAVMK--G---EWNGE--YEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhhee--eeceeec--c---ccccc--CCCcceEE
Confidence 5789999999999999998876 478999999999999999987654310 0111110 0 23222 36799999
Q ss_pred EcCCC
Q 020933 206 VDSSD 210 (319)
Q Consensus 206 ~D~~~ 210 (319)
+|...
T Consensus 98 iDCeG 102 (156)
T PHA01634 98 MDCEG 102 (156)
T ss_pred EEccc
Confidence 88754
No 308
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.45 E-value=0.32 Score=45.67 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=59.5
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh-CCCCCcc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~-~~~~~fD 202 (319)
....+||++|+|. |..+.++++..+..+|++++.+++-.+.+++.-. +.-+.....+ .+-+.. .....+|
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga-------~~~i~~~~~~-~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA-------DFVINSGQDD-VQEIRELTSGAGAD 233 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-------CEEEcCCcch-HHHHHHHhCCCCCC
Confidence 3478999998653 3344556776655559999999998888876421 1111111122 222222 2234799
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|+--.. ....++...+.|+++|.+++-.
T Consensus 234 ~vid~~g----------~~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 234 VAIECSG----------NTAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EEEECCC----------CHHHHHHHHHHhhcCCEEEEEc
Confidence 9883222 1245677788999999998653
No 309
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.43 E-value=0.35 Score=45.39 Aligned_cols=99 Identities=23% Similarity=0.281 Sum_probs=67.8
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.+.+|.+||+|. |..+.-++--. ...|+.+|+|..-++.....|. .|++.+......+-.. -.++|+|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~--------~rv~~~~st~~~iee~--v~~aDlv 235 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFG--------GRVHTLYSTPSNIEEA--VKKADLV 235 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhC--------ceeEEEEcCHHHHHHH--hhhccEE
Confidence 356899999986 55555555443 4789999999888877766553 4788888776666543 3678999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
|.-.--|-..++.|. .+++.+.+|||++++=
T Consensus 236 IgaVLIpgakaPkLv----t~e~vk~MkpGsVivD 266 (371)
T COG0686 236 IGAVLIPGAKAPKLV----TREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEEecCCCCceeh----hHHHHHhcCCCcEEEE
Confidence 864433333334444 4566677999999873
No 310
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=94.43 E-value=0.55 Score=42.64 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=83.6
Q ss_pred eEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC--CCCCccEEEEcC
Q 020933 131 LVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDAVIVDS 208 (319)
Q Consensus 131 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~--~~~~fDvIi~D~ 208 (319)
|..=+|+=.+++.+++.. .++..+|+.|.=..+.+++|. .+.++++..+|++.-+... +.++=-+|++|+
T Consensus 93 l~~YpGSP~lA~~llR~q--DRl~l~ELHp~D~~~L~~~f~------~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLREQ--DRLVLTELHPSDAPLLRNNFA------GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcchh--ceeeeeecCccHHHHHHHHhC------CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence 666778888888888753 689999999999999999887 3679999999999887654 456678899887
Q ss_pred CCCCCCccccchHHHHHHHHHhcC--CCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 209 SDPIGPAQELFEKPFFESVAKALR--PGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 209 ~~~~~~~~~l~~~~f~~~~~~~Lk--pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
+...... .....+.+.+.++ ++|+++++- +......++.+.+.+++.-
T Consensus 165 PfE~~~e----Y~rvv~~l~~~~kRf~~g~yaiWY--Pik~r~~~~~f~~~L~~~~ 214 (279)
T COG2961 165 PFELKDE----YQRVVEALAEAYKRFATGTYAIWY--PIKDRRQIRRFLRALEALG 214 (279)
T ss_pred CcccccH----HHHHHHHHHHHHHhhcCceEEEEE--eecchHHHHHHHHHHhhcC
Confidence 6532221 1122333333333 578888764 3445667788888887653
No 311
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=94.32 E-value=0.71 Score=41.84 Aligned_cols=85 Identities=21% Similarity=0.308 Sum_probs=50.3
Q ss_pred CceeeEeecc-ccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccC--C------------CCCCCeEEEEcChH-
Q 020933 127 PKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV--G------------FEDPRVTLHIGDGV- 190 (319)
Q Consensus 127 ~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~--~------------~~~~~v~v~~~D~~- 190 (319)
..+|+++|.| -|+.+.+.+.+.+..+++.+|.|.--+.-..+....... | .-+|++++..-+.+
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~ 109 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI 109 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence 4589999965 488888877777889999999987544332222211100 0 01467777654432
Q ss_pred --HHHHhCCCCCccEEEEcCCCCC
Q 020933 191 --AFLKAVPEGTYDAVIVDSSDPI 212 (319)
Q Consensus 191 --~~l~~~~~~~fDvIi~D~~~~~ 212 (319)
+.+.++-...||.|| |+.|..
T Consensus 110 t~en~~~~~~~~~DyvI-DaiD~v 132 (263)
T COG1179 110 TEENLEDLLSKGFDYVI-DAIDSV 132 (263)
T ss_pred CHhHHHHHhcCCCCEEE-Echhhh
Confidence 122222245799987 555543
No 312
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.21 E-value=0.053 Score=52.74 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=46.5
Q ss_pred ceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcC
Q 020933 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD 188 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D 188 (319)
..||+||+|||.++....+.. ...|+++|.=..|.+.|++-..++ ++.+ +++++..-
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kn--g~Sd-kI~vInkr 124 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKN--GMSD-KINVINKR 124 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcC--CCcc-ceeeeccc
Confidence 369999999999998888875 568999999999999999977665 5544 77777643
No 313
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.18 E-value=1.5 Score=41.31 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=81.8
Q ss_pred eeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCC
Q 020933 130 VLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSS 209 (319)
Q Consensus 130 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~ 209 (319)
|+++-||.|++...+.+.. ..-+.++|+|+..++..+.+++. .++.+|..+..... -..+|+|+..++
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~-~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSD-IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhh-CCCcCEEEecCC
Confidence 6899999999998887663 45567899999999999988752 34557877654321 245899997654
Q ss_pred CCC-C---C------ccccchHHHHHHHHHhcCCCcEEEEecCCccc--ChHHHHHHHHHHHhhcCCceeEeEE-----e
Q 020933 210 DPI-G---P------AQELFEKPFFESVAKALRPGGVVSTQAESIWL--HMHIIEDIVANCRQIFKGSVNYAWT-----T 272 (319)
Q Consensus 210 ~~~-~---~------~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~--~~~~~~~~~~~l~~~F~~~v~~~~~-----~ 272 (319)
... . . .......++++. .+.++|.=+++=|+..... ....+..+++.++.. ...+.+... -
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~-i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~-GY~v~~~~l~a~dyG 146 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRI-LKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEEL-GYKVYYKVLNAKDFG 146 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHH-HhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHhC-CCEEEEEEEcHHHCC
Confidence 321 1 0 111112234443 3457887555544432211 124456666666543 122322222 2
Q ss_pred ecccCCCeeEEEEc
Q 020933 273 VPTYPRTFLPSCSA 286 (319)
Q Consensus 273 vP~~~~g~~~~~S~ 286 (319)
+|......++++++
T Consensus 147 vPQ~R~R~f~ia~r 160 (315)
T TIGR00675 147 VPQNRERIYIVGFR 160 (315)
T ss_pred CCCCccEEEEEEEe
Confidence 44443344488887
No 314
>PLN02740 Alcohol dehydrogenase-like
Probab=93.83 E-value=0.53 Score=45.28 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=60.7
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE--cChHHHHHhCCCCCc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI--GDGVAFLKAVPEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~--~D~~~~l~~~~~~~f 201 (319)
....+||++|+|. |..+.++++..+..+|++++.+++-++.+++. .. +.-+.... .|..+.+.....+.+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI------TDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC------cEEEecccccchHHHHHHHHhCCCC
Confidence 4567999998754 44455667766655799999999999998764 21 11111111 123333333222369
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCC-cEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~Lkpg-G~lv~~~ 241 (319)
|+|+- ... ....++...+.++++ |.+++-.
T Consensus 270 dvvid-~~G---------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 270 DYSFE-CAG---------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CEEEE-CCC---------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 98873 222 124577777889897 9887643
No 315
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.82 E-value=0.51 Score=47.49 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=59.5
Q ss_pred CCceeeEeecccc-HHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCC--------CCeEEEEcChHH----H
Q 020933 126 NPKKVLVIGGGDG-GVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFED--------PRVTLHIGDGVA----F 192 (319)
Q Consensus 126 ~~~~VL~IG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~--------~~v~v~~~D~~~----~ 192 (319)
.+.+||++|+|.= ..+..+++..+ ..|+++|.++..++.+++. +.....++. .-.+..-.|..+ .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 4689999999874 44455566544 4699999999999988873 211000000 001111111111 0
Q ss_pred HHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEE
Q 020933 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (319)
Q Consensus 193 l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv 238 (319)
+.+. -..+|+||.-.--|-.+.+.|.++ .+.+.+|||++++
T Consensus 241 ~~e~-~~~~DIVI~TalipG~~aP~Lit~----emv~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQ-AKEVDIIITTALIPGKPAPKLITE----EMVDSMKAGSVIV 281 (511)
T ss_pred HHHH-hCCCCEEEECcccCCCCCCeeehH----HHHhhCCCCCEEE
Confidence 1111 356999986554444444455554 4566788888876
No 316
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.72 E-value=2.5 Score=42.18 Aligned_cols=154 Identities=14% Similarity=0.021 Sum_probs=88.3
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh-----------
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA----------- 195 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~----------- 195 (319)
.-+++|+-||.|++...+-.. +..-|-++|+|+...+.-+.++.. ++...++.+|..+....
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhCccccccccchhhhh
Confidence 459999999999999998766 345678899999999998888742 12334445555544210
Q ss_pred ----CCCCCccEEEEcCCCC-CCCcc------------------ccchHHHHHHHHHhcCCCcEEEEecCCcccC--hHH
Q 020933 196 ----VPEGTYDAVIVDSSDP-IGPAQ------------------ELFEKPFFESVAKALRPGGVVSTQAESIWLH--MHI 250 (319)
Q Consensus 196 ----~~~~~fDvIi~D~~~~-~~~~~------------------~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~--~~~ 250 (319)
......|+++..++.. .+.+. .....++++ +.+.++|.-+++=|+.....+ ...
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~r-ii~~~kPk~fvlENV~gl~s~~~g~~ 239 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVAR-IIDAKRPAIFVLENVKNLKSHDKGKT 239 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHH-HHHHhCCCEEEEeCcHhhhcccccHH
Confidence 0013579988755432 11110 001123343 344578887666555443222 235
Q ss_pred HHHHHHHHHhhcCCceeE-------------eEEeecccCCCeeEEEEcCCC
Q 020933 251 IEDIVANCRQIFKGSVNY-------------AWTTVPTYPRTFLPSCSAVNS 289 (319)
Q Consensus 251 ~~~~~~~l~~~F~~~v~~-------------~~~~vP~~~~g~~~~~S~~~~ 289 (319)
++.+++.+.+.= ..+.. ....+|.-....++++.++..
T Consensus 240 f~~i~~~L~~lG-Y~v~~~~~~g~~~~~vlna~~fVPQ~R~RvfiVg~r~~~ 290 (467)
T PRK10458 240 FRIIMQTLDELG-YDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDL 290 (467)
T ss_pred HHHHHHHHHHcC-CeEEeccccCcccceEeehhhCCCccCcEEEEEEEeCCc
Confidence 677777776531 12211 001167655455588887643
No 317
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.68 E-value=0.63 Score=41.38 Aligned_cols=99 Identities=19% Similarity=0.290 Sum_probs=61.8
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
....+||+.|+|+ |..+..+++..+ .+|++++.++...+.+++.... .-+.....+...-+.....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHHHhcCCCCCE
Confidence 4567999999886 556666676654 6899999998888877654211 011111112222111122467999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+..... ...++.+.+.|+++|.++...
T Consensus 205 vi~~~~~----------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGG----------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCC----------HHHHHHHHHhcccCCEEEEEc
Confidence 9854322 135777888999999998754
No 318
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.65 E-value=0.043 Score=50.57 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=68.3
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
+....+||+|||.|-.+. .. |...+.++|++...+..+++.- ...+..+|+..... ++..||.+
T Consensus 44 ~~gsv~~d~gCGngky~~---~~-p~~~~ig~D~c~~l~~~ak~~~----------~~~~~~ad~l~~p~--~~~s~d~~ 107 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VN-PLCLIIGCDLCTGLLGGAKRSG----------GDNVCRADALKLPF--REESFDAA 107 (293)
T ss_pred CCcceeeecccCCcccCc---CC-CcceeeecchhhhhccccccCC----------CceeehhhhhcCCC--CCCccccc
Confidence 345689999999995432 22 4467899999999988887631 11677788777643 36889998
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++-+.-+.. +...-....++++.++|+|||...+.+
T Consensus 108 lsiavihhl-sT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 108 LSIAVIHHL-STRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhhh-hhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 854332211 112224568999999999999866653
No 319
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.64 E-value=0.97 Score=42.85 Aligned_cols=148 Identities=20% Similarity=0.161 Sum_probs=88.9
Q ss_pred ceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCC-CccEEEE
Q 020933 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEG-TYDAVIV 206 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~-~fDvIi~ 206 (319)
.++++|-||.|++...+.... ..-+.++|+|+..++.-+.+++. -.++..|..++....-.. .+|+|+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEEe
Confidence 589999999999998887764 56688999999999999988762 456667776664332122 7899997
Q ss_pred cCCCCC----CC------c-cccchHHHHHHHHHhcCCCcEEEEecCCcccC-hHHHHHHHHHHHhh-cC---CceeEeE
Q 020933 207 DSSDPI----GP------A-QELFEKPFFESVAKALRPGGVVSTQAESIWLH-MHIIEDIVANCRQI-FK---GSVNYAW 270 (319)
Q Consensus 207 D~~~~~----~~------~-~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~-~~~~~~~~~~l~~~-F~---~~v~~~~ 270 (319)
.++... +. + ..| ..+ +..+...++|.-.++=|+.....+ ...++.+.+.+++. |. ...+...
T Consensus 74 GpPCQ~FS~aG~r~~~~D~R~~L-~~~-~~r~I~~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~d 151 (328)
T COG0270 74 GPPCQDFSIAGKRRGYDDPRGSL-FLE-FIRLIEQLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAAD 151 (328)
T ss_pred CCCCcchhhcCcccCCcCcccee-eHH-HHHHHHhhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHh
Confidence 655421 11 1 112 233 444556688844444344443332 34566666666654 21 1111111
Q ss_pred EeecccCCCeeEEEEcC
Q 020933 271 TTVPTYPRTFLPSCSAV 287 (319)
Q Consensus 271 ~~vP~~~~g~~~~~S~~ 287 (319)
.-+|......++++.++
T Consensus 152 yGvPQ~ReRvfiig~~~ 168 (328)
T COG0270 152 YGVPQSRERVFIVGFRR 168 (328)
T ss_pred cCCCCCccEEEEEEecC
Confidence 24666554455777664
No 320
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=93.58 E-value=0.088 Score=47.97 Aligned_cols=111 Identities=21% Similarity=0.156 Sum_probs=79.7
Q ss_pred CceeeEeeccccHHHHHHHhcC------------CCceEEEEECChHHHHHHHh--cccccc------------------
Q 020933 127 PKKVLVIGGGDGGVLREVSRHS------------SVEKIDICEIDKMVVDVSKQ--FFPDVA------------------ 174 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~------------~~~~v~~VEid~~vi~~ak~--~~~~~~------------------ 174 (319)
.-.|+++|.|+|...+.+.+.. ....++.+|.+|.....+.. ..+...
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 3478999999999877665421 23457888888754433221 111110
Q ss_pred -CCC-CCCCeEEEEcChHHHHHhCCCC---CccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 175 -VGF-EDPRVTLHIGDGVAFLKAVPEG---TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 175 -~~~-~~~~v~v~~~D~~~~l~~~~~~---~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
..+ ..-.+.+++||+.+.+... +. ++|+.+.|.+.|...+ .+++.++|..+++..+|||.++.
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~-~~~~~~~dAwflDgFsP~kNP-~mW~~e~l~~~a~~~~~~~~l~t 206 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPV-PRRRPGTDAWFLDGFRPVKNP-EMWEDELLNLMARIPYRDPTLAT 206 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCcc-cccccCccEEecCCccccCCh-hhccHHHHHHHHhhcCCCCceec
Confidence 001 2346788999999888665 34 7999999999988877 88999999999999999999996
No 321
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.55 E-value=0.067 Score=44.73 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=47.2
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF 192 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~ 192 (319)
..+.+|||.|+|.+....+++. ....++||++|-.+..+|-+.-.. +. .++.+|..-|..++
T Consensus 73 ~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~--g~-~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRA--GC-AKSTRFRRKDLWKV 134 (199)
T ss_pred CCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHH--hc-ccchhhhhhhhhhc
Confidence 3699999999999999999885 456899999999999887653222 11 24677777776665
No 322
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.52 E-value=0.7 Score=43.60 Aligned_cols=100 Identities=26% Similarity=0.302 Sum_probs=62.1
Q ss_pred CCCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCc
Q 020933 124 IPNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTY 201 (319)
Q Consensus 124 ~~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~f 201 (319)
.+..++||+.|+|. |..+.++++..+...+++++.+++-.+.++++ .. +.-+.....+..+.+... ....+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~i~~~~~~~~~ 236 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GA------TDIVDYKNGDVVEQILKLTGGKGV 236 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------ceEecCCCCCHHHHHHHHhCCCCC
Confidence 34568999997653 44556677776666799999999888888863 21 111111122322223222 23569
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|+|+-... ....+..+.++|+++|.++.-
T Consensus 237 d~vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 237 DAVIIAGG----------GQDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred cEEEECCC----------CHHHHHHHHHHhhcCCEEEEe
Confidence 98883221 124678889999999998854
No 323
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.51 E-value=0.062 Score=47.86 Aligned_cols=60 Identities=23% Similarity=0.413 Sum_probs=47.6
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF 192 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~ 192 (319)
..-|.+||.|.|++++.++... .++...||+|+..+.-.+-. .+. .+.++.++.+|+..|
T Consensus 51 ~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L-~EA----a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQML-SEA----APGKLRIHHGDVLRF 110 (326)
T ss_pred cceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHH-hhc----CCcceEEecccccee
Confidence 4579999999999999999874 67899999999988766543 222 245899999998765
No 324
>PLN02827 Alcohol dehydrogenase-like
Probab=93.50 E-value=0.54 Score=45.29 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=60.6
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE--cChHHHHHhCCCCCc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI--GDGVAFLKAVPEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~--~D~~~~l~~~~~~~f 201 (319)
..+.+||+.|+|. |..+.++++..+...|++++.+++-.+.+++. .. +.-+.... .+..+.+.....+.+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GV------TDFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CC------cEEEcccccchHHHHHHHHHhCCCC
Confidence 4568999998654 44455667766656788999999988888664 21 10111111 133333333213369
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCC-cEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~Lkpg-G~lv~~~ 241 (319)
|+|+- ... ....+....+.|++| |.+++-.
T Consensus 265 d~vid-~~G---------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 265 DYSFE-CVG---------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CEEEE-CCC---------ChHHHHHHHHhhccCCCEEEEEC
Confidence 99883 322 123577788889998 9998643
No 325
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.44 E-value=0.54 Score=42.82 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=56.4
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCC--CCeEEEE---cChHHHHHhCCCCC
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFED--PRVTLHI---GDGVAFLKAVPEGT 200 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~--~~v~v~~---~D~~~~l~~~~~~~ 200 (319)
++++||+||+|+|..+..++.+. ..+|+.-|+-..+ +..+.+........+. ..+.+.. ++...... . ...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~-~-~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSF-R-LPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhh-c-cCC
Confidence 46789999999998888877764 3677777775444 3333332221101111 1222222 22222111 1 233
Q ss_pred -ccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 201 -YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 201 -fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
+|+|+. .+.+..+.. -......++..|..+|++.+
T Consensus 162 ~~Dlila--sDvvy~~~~--~e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 162 PFDLILA--SDVVYEEES--FEGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred cccEEEE--eeeeecCCc--chhHHHHHHHHHhcCCeEEE
Confidence 999994 333222111 12457777888888995444
No 326
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.43 E-value=0.12 Score=45.30 Aligned_cols=52 Identities=21% Similarity=0.159 Sum_probs=38.0
Q ss_pred HHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHh
Q 020933 115 MITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQ 168 (319)
Q Consensus 115 ~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~ 168 (319)
++..+.......+..|||.-+|+|+.+.++.+.. .+..++|++++..++|++
T Consensus 180 l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhhhccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 3333333334567899999999999999988874 679999999999999975
No 327
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.18 E-value=0.75 Score=36.06 Aligned_cols=94 Identities=21% Similarity=0.286 Sum_probs=58.9
Q ss_pred eeEeeccccHHHHHHHhc--CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH--HHHhCCCCCccEEE
Q 020933 130 VLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTYDAVI 205 (319)
Q Consensus 130 VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~--~l~~~~~~~fDvIi 205 (319)
|+++|+| .+++.+++. ....+|+++|.|++.++.+++. .+.++.+|+.+ .+++..-++.|.|+
T Consensus 1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence 5667776 455555442 1235899999999998887753 26788999864 45555446889888
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+...+.. ..-..-...+.+.|...+++...+
T Consensus 68 ~~~~~d~-------~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 68 ILTDDDE-------ENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp EESSSHH-------HHHHHHHHHHHHTTTSEEEEEESS
T ss_pred EccCCHH-------HHHHHHHHHHHHCCCCeEEEEECC
Confidence 7654311 112233445667888888876543
No 328
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.07 E-value=0.63 Score=44.10 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=64.6
Q ss_pred CCCceeeEeec--cccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCC-CCCc
Q 020933 125 PNPKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVP-EGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~-~~~f 201 (319)
....+||+.|+ |-|.++.++++..+. .++++--+++-.+.+++.-.. .-+.+...|..+-+++.. ...+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd-------~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGAD-------HVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCC-------EEEcCCcccHHHHHHHHcCCCCc
Confidence 34789999994 557788889998655 555555666655577765432 234445556555554432 3469
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+|+--. + .+.+....+.|+++|.++.-.
T Consensus 213 Dvv~D~v----G-------~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 213 DVVLDTV----G-------GDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred eEEEECC----C-------HHHHHHHHHHhccCCEEEEEe
Confidence 9988221 1 256778899999999998754
No 329
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.05 E-value=0.68 Score=43.79 Aligned_cols=93 Identities=14% Similarity=0.212 Sum_probs=57.8
Q ss_pred CCCceeeEeeccccH-HHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 125 PNPKKVLVIGGGDGG-VLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~-~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
....+||++|+|.=+ ++..++++ .+..+|+++|.+++-++.+++ +.. . ... + ++.. ...+|
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---------~-~~~-~--~~~~---~~g~d 224 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---------T-YLI-D--DIPE---DLAVD 224 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---------e-eeh-h--hhhh---ccCCc
Confidence 346799999976533 44555664 445689999999988888875 211 0 111 1 1111 22589
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|| |...... ....++...++|+++|.+++-.
T Consensus 225 ~vi-D~~G~~~------~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 225 HAF-ECVGGRG------SQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EEE-ECCCCCc------cHHHHHHHHHhCcCCcEEEEEe
Confidence 887 4332110 2346788889999999998653
No 330
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.94 E-value=0.77 Score=42.63 Aligned_cols=99 Identities=21% Similarity=0.270 Sum_probs=61.3
Q ss_pred CCCceeeEeecc-ccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
....+||+.|+| .|..+.++++..+ .+|++++.+++..+.++++ .. +.-+.....+....+.....+.+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GA------DEVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CC------CEEEcCCCcCHHHHHHHhcCCCceE
Confidence 345789998765 3666777777654 5699999999988888653 11 1011111112222222223567998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+.... ....++.+.+.|+++|.++...
T Consensus 236 vid~~g----------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 236 IFDFVG----------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEECCC----------CHHHHHHHHHHhhcCCEEEEEC
Confidence 873221 1246888899999999998653
No 331
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.81 E-value=0.85 Score=42.26 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=62.2
Q ss_pred CCCceeeEeec--cccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 125 PNPKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
..+.+||+.|+ |.|..+.++++..+ .+|+++..+++-.+.++++ .. +.-+.....|..+.+.....+.+|
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~~-Ga------~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKEL-GF------DAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------CEEEeCCCccHHHHHHHHCCCCcE
Confidence 35679999984 55667777888765 4789999998888888773 21 111111122433334333235699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+|+ |... ...++...+.|+++|.++..
T Consensus 214 ~vl-d~~g----------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYF-DNVG----------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEE-ECCC----------HHHHHHHHHhhccCCEEEEE
Confidence 888 3322 14578889999999999864
No 332
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.68 E-value=0.89 Score=43.20 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=62.4
Q ss_pred CCCceeeEeec--cccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEc-ChHHHHHhCCCCCc
Q 020933 125 PNPKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG-DGVAFLKAVPEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~-D~~~~l~~~~~~~f 201 (319)
..+.+||+.|+ |.|..+.++++..+ .+|++++.+++-.+.+++.+.. +.-+..... |..+.+.....+.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGF------DEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCC------CEEEECCCcccHHHHHHHHCCCCc
Confidence 45679999997 45667778888765 4788999998888877643321 111111111 33333433223469
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+|+ |... ...++.+.++|+++|.+++-.
T Consensus 230 D~v~-d~vG----------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 230 DIYF-DNVG----------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEEE-ECCC----------HHHHHHHHHHhccCCEEEEEC
Confidence 9988 3322 135778889999999998643
No 333
>PRK11524 putative methyltransferase; Provisional
Probab=92.63 E-value=0.2 Score=46.53 Aligned_cols=57 Identities=14% Similarity=-0.000 Sum_probs=45.0
Q ss_pred HHHHhccccCCCCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhcccc
Q 020933 114 EMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPD 172 (319)
Q Consensus 114 e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~ 172 (319)
+++..+....-..+..|||--+|+|..+..+.+.. .+..++|++++.+++|++++..
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 44444433344567899999999999998888774 6899999999999999998753
No 334
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=92.63 E-value=0.13 Score=43.01 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=51.8
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC--CCCCccE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV--PEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~--~~~~fDv 203 (319)
-+.-|||+|.|.|..=..+-+..|..+|.+.|-.-.. .+.. ..+.-.++.||+++-+... -..+.-+
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~-------hp~~----~P~~~~~ilGdi~~tl~~~~~~g~~a~l 96 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALAC-------HPSS----TPPEEDLILGDIRETLPALARFGAGAAL 96 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GGG-------GGGEEES-HHHHHHHHHHH-S-EEE
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeeeccc-------CCCC----CCchHheeeccHHHHhHHHHhcCCceEE
Confidence 4578999999999998888888888999999873211 1111 1234578999999877642 1233334
Q ss_pred EEEcCCCCCCCccccchHHH-HHHHHHhcCCCcEEEE
Q 020933 204 VIVDSSDPIGPAQELFEKPF-FESVAKALRPGGVVST 239 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f-~~~~~~~LkpgG~lv~ 239 (319)
+-.|.-.... .....+..+ =..+..+|.|||+++-
T Consensus 97 aHaD~G~g~~-~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 97 AHADIGTGDK-EKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp EEE----S-H-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEeecCCCCc-chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 4444432211 111111122 2345789999999985
No 335
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.48 E-value=0.9 Score=43.00 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=59.6
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEc---ChHHHHHhC-CCC
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG---DGVAFLKAV-PEG 199 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~---D~~~~l~~~-~~~ 199 (319)
....+||++|+|. |..+.++++..+. +|++++.+++-++.+++. .. +.-+..... |..+.+.+. ...
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF-GA------DLTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh-CC------ceEecCccccHHHHHHHHHhhcccC
Confidence 3567999999865 5556667776654 799999999998888763 21 101111111 222333222 123
Q ss_pred Ccc----EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 200 TYD----AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 200 ~fD----vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
.+| +|+ |... ....++.+.++|++||.+++..
T Consensus 237 g~d~~~d~v~-d~~g---------~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 237 GLRSTGWKIF-ECSG---------SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCCcCEEE-ECCC---------ChHHHHHHHHHHhcCCeEEEEC
Confidence 455 444 4432 1245777888999999998754
No 336
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.44 E-value=0.5 Score=40.83 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=59.7
Q ss_pred eeeEeeccccHHH--HHHHhcCCCceEEEEECChHHHHHHHhcccccc------CCCC-------CCCeEEEEcChHHHH
Q 020933 129 KVLVIGGGDGGVL--REVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA------VGFE-------DPRVTLHIGDGVAFL 193 (319)
Q Consensus 129 ~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~------~~~~-------~~~v~v~~~D~~~~l 193 (319)
+|.+||+|.-+.. ..++.. ..+|+.+|.|++.++.+++++...- ..+. -.++++ ..|..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~--- 74 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLE--- 74 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGG---
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHH---
Confidence 5789999875543 334444 3789999999999998888765410 0111 124442 23322
Q ss_pred HhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 194 KAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 194 ~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
.. . ..|+||=..+... -.++++|+.+.+.+.|+-+|..|+.+
T Consensus 75 -~~-~-~adlViEai~E~l-----~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 75 -EA-V-DADLVIEAIPEDL-----ELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp -GG-C-TESEEEE-S-SSH-----HHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred -HH-h-hhheehhhccccH-----HHHHHHHHHHHHHhCCCceEEecCCC
Confidence 22 2 5788884333211 12578999999999999999998754
No 337
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=92.38 E-value=1.3 Score=41.17 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=61.5
Q ss_pred CCCceeeEeec--cccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE-cChHHHHHhCCCCCc
Q 020933 125 PNPKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~-~D~~~~l~~~~~~~f 201 (319)
....+||+.|+ |.|..+.++++..+ .+|+++..+++-.+.+++. .. +.-+.... .+..+.++....+.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~~~~~~~~~l-Ga------~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKVAYLKKL-GF------DVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CC------CEEEeccccccHHHHHHHhCCCCe
Confidence 45679999984 56777777888765 4788899888888888653 21 11111111 122333333323569
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+|+ |... .+.++...++|+++|.++.-.
T Consensus 209 dvv~-d~~G----------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 209 DCYF-DNVG----------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEEE-ECCC----------HHHHHHHHHHhCcCcEEEEec
Confidence 9988 3322 134678889999999998643
No 338
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.37 E-value=0.31 Score=45.14 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=60.9
Q ss_pred ceeeEeeccccH--HHHHHHhcCCCceEEEEECChHHHHHHHhcccccc-----CC-CCC-------CCeEEEEcChHHH
Q 020933 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FED-------PRVTLHIGDGVAF 192 (319)
Q Consensus 128 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-----~~-~~~-------~~v~v~~~D~~~~ 192 (319)
++|.+||+|.-+ ++..+++.. .+|+++|.+++.++.++++..... .+ ... .++++ ..|..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 479999998533 444455442 579999999999988776432110 00 000 12222 2232222
Q ss_pred HHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 193 l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+ ..-|+||.-.++... ....+|+.+.+.++|+.++++++.+
T Consensus 79 ~-----~~aD~Vi~avpe~~~-----~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 V-----ADADLVIEAVPEKLE-----LKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred h-----cCCCEEEEeccCCHH-----HHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2 346999966554221 1446788888999998888776543
No 339
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.29 E-value=0.2 Score=46.93 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=61.0
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccc-------------cc---cCC--CC----------
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP-------------DV---AVG--FE---------- 178 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~-------------~~---~~~--~~---------- 178 (319)
+.+||+-|||.|.++..++..+.. +.+=|.+--|+=. ..|.- .. +.. .+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~--~qGNEfSy~Mli~-S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFK--CQGNEFSYFMLIC-SSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccc--ccccHHHHHHHHH-HHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 568999999999999999987533 3444666544322 22110 00 000 00
Q ss_pred ---------CCCeEEEEcChHHHHHhC-CCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 179 ---------DPRVTLHIGDGVAFLKAV-PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 179 ---------~~~v~v~~~D~~~~l~~~-~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
...+.+-.||..+..... ..+.||+|+...+-. .+.. -.++++.+.+.|||||+.+-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~N--ileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHN--ILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHH--HHHHHHHHHHhccCCcEEEe
Confidence 012333447755544322 124699998643211 1111 34899999999999999873
No 340
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.26 E-value=0.46 Score=41.68 Aligned_cols=115 Identities=18% Similarity=0.066 Sum_probs=62.5
Q ss_pred CCCCCceeeEeeccccHHHHHHHhc-CCCceEEEEECChHHHHHHHhcccccc---CCCCCCCeEEEEcChHHHHHhCCC
Q 020933 123 SIPNPKKVLVIGGGDGGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVA---VGFEDPRVTLHIGDGVAFLKAVPE 198 (319)
Q Consensus 123 ~~~~~~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~---~~~~~~~v~v~~~D~~~~l~~~~~ 198 (319)
-.+....|.|+=-|.|..++.++.. .+...|..+-.++ +...+..+-+... ....-.+++.+-.+...+. +.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e-~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~---~p 120 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE-LTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG---AP 120 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh-hcccccchhhhhhhhhhhhhhhhhhhhCCcccccC---CC
Confidence 3456679999999999999999875 3334565553322 2121111111100 0000123444444433332 24
Q ss_pred CCccEEEEcCCCCCCCc---cccchHHHHHHHHHhcCCCcEEEEec
Q 020933 199 GTYDAVIVDSSDPIGPA---QELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 199 ~~fDvIi~D~~~~~~~~---~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+..|++.....++.... ..-+-..+++.+.+.|||||++++.-
T Consensus 121 q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 55676665444332111 11224578999999999999998764
No 341
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.05 E-value=1.8 Score=37.55 Aligned_cols=107 Identities=22% Similarity=0.266 Sum_probs=57.2
Q ss_pred eeeEeeccccHHHHH--HHhcCCCceEEEEECChHHHHHHHhccccccC-CC--------CCCCeEEEEcChHHHHHhCC
Q 020933 129 KVLVIGGGDGGVLRE--VSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV-GF--------EDPRVTLHIGDGVAFLKAVP 197 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~-~~--------~~~~v~v~~~D~~~~l~~~~ 197 (319)
+|-++|.|-=++... +++.. .+|+++|+|++.++..++-...... ++ ...|+.+. .|..+.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~--- 75 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIK--- 75 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHH---
T ss_pred EEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhh---
Confidence 688899886554433 44443 6899999999999987754221100 10 12234333 34343333
Q ss_pred CCCccEEEEcCCCCCCC---ccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 198 EGTYDAVIVDSSDPIGP---AQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~~---~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
..|++++..+.|... +.--+-....+.+.+.|+++-++++.+.-
T Consensus 76 --~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 76 --DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp --H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred --ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 358888755544322 22223456788889999998888877643
No 342
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=91.99 E-value=1.4 Score=41.27 Aligned_cols=99 Identities=23% Similarity=0.251 Sum_probs=59.5
Q ss_pred CCCceeeEeecc-ccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCcc
Q 020933 125 PNPKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fD 202 (319)
+++.+||+.|+| .|..+.++++..+...|.+++.++...+.+++.-. +.-+.....+..+.+... ..+.+|
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~-------~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA-------TDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC-------cEEEcCCcchHHHHHHHHcCCCCCc
Confidence 346789886654 25556667776554578888888888887775411 111122222333333322 235799
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+|+. ... ....++...+.|+++|.++.-
T Consensus 239 ~vld-~~g---------~~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIE-AVG---------FEETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEE-ccC---------CHHHHHHHHHHhhcCCEEEEE
Confidence 9883 221 124678888999999998854
No 343
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.98 E-value=1.5 Score=41.11 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=59.7
Q ss_pred CCCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcC----hHHHHHhCCC
Q 020933 124 IPNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGD----GVAFLKAVPE 198 (319)
Q Consensus 124 ~~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D----~~~~l~~~~~ 198 (319)
..+..+||+.|+|. |..+.++++..+...|+++.-+++-.+.+++. .. +.-+.....+ ..+......+
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA------THTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC------cEEeccccccchhHHHHHHHHhCC
Confidence 34567999977654 55566677776654588898888887777653 21 1011111112 1122222224
Q ss_pred CCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 199 GTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 199 ~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
..+|+|+-... ....++...+.|+++|.++..
T Consensus 233 ~~~d~vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 233 KGPDVVIECTG----------AESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCEEEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 56999884322 123678889999999998864
No 344
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=91.91 E-value=1.8 Score=42.10 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=61.8
Q ss_pred CCceeeEeec--cccHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE----cChHHHHHhC-
Q 020933 126 NPKKVLVIGG--GDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI----GDGVAFLKAV- 196 (319)
Q Consensus 126 ~~~~VL~IG~--G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~----~D~~~~l~~~- 196 (319)
...+||++|+ +-|..+.++++.. +..+|+++|.+++-++.+++.+..... .......++. .|..+.+...
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHHh
Confidence 4578999973 4566777777764 235799999999999999886432100 0000111221 2333333332
Q ss_pred CCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 197 PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 197 ~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
....+|+|+..... ...++...+.|+++|.+++.
T Consensus 254 ~g~g~D~vid~~g~----------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVPV----------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCCC----------HHHHHHHHHHhccCCeEEEE
Confidence 23469998853321 24577888899988866543
No 345
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.91 E-value=0.85 Score=45.40 Aligned_cols=102 Identities=16% Similarity=0.242 Sum_probs=56.1
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.-++|+|..+|.|+++..|.+.+ |.+.-.-|. .....++-. ++..-+=++ .|--+-+..+ +.+||+|-
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~---~~~ntL~vI---ydRGLIG~y-hDWCE~fsTY-PRTYDLlH 432 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPV---SGPNTLPVI---YDRGLIGVY-HDWCEAFSTY-PRTYDLLH 432 (506)
T ss_pred ceeeeeeecccccHHHHHhccCC----ceEEEeccc---CCCCcchhh---hhcccchhc-cchhhccCCC-Ccchhhee
Confidence 45799999999999999998763 333322221 011111110 111111111 1222222333 58999998
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
.+.-..... .+..-...+-++-|.|+|+|.+++.
T Consensus 433 A~~lfs~~~-~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 433 ADGLFSLYK-DRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hhhhhhhhc-ccccHHHHHHHhHhhcCCCceEEEe
Confidence 653221111 1122356788899999999999985
No 346
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.76 E-value=0.21 Score=42.52 Aligned_cols=105 Identities=18% Similarity=0.188 Sum_probs=55.5
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccC-CCC--CCCeEEEEcChHHHHHhC-----
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV-GFE--DPRVTLHIGDGVAFLKAV----- 196 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~-~~~--~~~v~v~~~D~~~~l~~~----- 196 (319)
+|.+|+++|.|. |.-+.++++..+ .+++..|..+..++..+........ ... ..+-. -|-..+-+..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 94 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYES 94 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhHH
Confidence 578999999986 445555666544 5799999999988877665443210 000 00000 1211111110
Q ss_pred ----CCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEE
Q 020933 197 ----PEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (319)
Q Consensus 197 ----~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv 238 (319)
.-..+|+||+....+....+.+.+++-++ .|+|+-+++
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~----~m~~gsvIv 136 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVK----SMKPGSVIV 136 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTTSS---SBEHHHHH----TSSTTEEEE
T ss_pred HHHHHHhhCcEEeeecccCCCCCCEEEEhHHhh----ccCCCceEE
Confidence 01458999976555555566777775544 467666555
No 347
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=91.72 E-value=1.6 Score=41.62 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=59.6
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEc--ChHHHHHhCCCCCc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG--DGVAFLKAVPEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~--D~~~~l~~~~~~~f 201 (319)
.+..+||++|+|. |..+..+++..+...|++++.+++-.+.+++. .. +.-+..... +..+.+.....+.+
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~v~~~~~~~~~~~~l~~~~~~~~ 254 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL-GA------TECINPRDQDKPIVEVLTEMTDGGV 254 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------CeecccccccchHHHHHHHHhCCCC
Confidence 4567999987643 33445566766656688999888888888653 21 111111222 33333333223569
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcC-CCcEEEEe
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALR-PGGVVSTQ 240 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~Lk-pgG~lv~~ 240 (319)
|+|+ |... ....+....+.|+ ++|.++..
T Consensus 255 d~vi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 255 DYAF-EVIG---------SADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred cEEE-ECCC---------CHHHHHHHHHHhccCCCEEEEE
Confidence 9988 3321 1245777888899 99998864
No 348
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.68 E-value=0.41 Score=44.19 Aligned_cols=102 Identities=22% Similarity=0.321 Sum_probs=60.9
Q ss_pred ceeeEeeccc--cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccc----c-CC-CCC-------CCeEEEEcChHHH
Q 020933 128 KKVLVIGGGD--GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV----A-VG-FED-------PRVTLHIGDGVAF 192 (319)
Q Consensus 128 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~----~-~~-~~~-------~~v~v~~~D~~~~ 192 (319)
++|.+||+|. +.++..++++. .+|+++|++++.++.+++.+... . .+ ... .++++ ..|.. -
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g--~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~-~ 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG--YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD-D 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC--CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH-H
Confidence 4799999995 44555566653 47999999999987554322111 0 01 000 13332 23321 1
Q ss_pred HHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 193 l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+ +..|+||.-.+... ....++|+.+.+.++|+.+++.++.+
T Consensus 80 ~-----~~aDlVi~av~e~~-----~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 L-----KDADLVIEAATENM-----DLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred h-----ccCCeeeecccccH-----HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 34699986543321 11458899999999999888766544
No 349
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=91.65 E-value=2.3 Score=36.27 Aligned_cols=96 Identities=14% Similarity=0.152 Sum_probs=56.5
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChH---HHHHhCCCCCcc
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV---AFLKAVPEGTYD 202 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~---~~l~~~~~~~fD 202 (319)
...+|+.|||=+-.....- ...+..++...|+|...-....+ +++.=|.. ++.... .++||
T Consensus 25 ~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~~--------------~F~fyD~~~p~~~~~~l-~~~~d 88 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGGD--------------EFVFYDYNEPEELPEEL-KGKFD 88 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCCc--------------ceEECCCCChhhhhhhc-CCCce
Confidence 4579999999875544333 13345789999999887553322 12222221 222233 57999
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+||+|++- -.... ...+-+.++.++|+++.+++-+
T Consensus 89 ~vv~DPPF---l~~ec-~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 89 VVVIDPPF---LSEEC-LTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred EEEECCCC---CCHHH-HHHHHHHHHHHhCccceEEEec
Confidence 99999865 11111 1123356666778888887643
No 350
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.64 E-value=1.1 Score=37.71 Aligned_cols=100 Identities=16% Similarity=0.259 Sum_probs=61.2
Q ss_pred eeeEeeccccHHHHHH--HhcCCCceEEEEECChHHHHHHHhcccccc--CCCC-CCCeEEEEcChHHHHHhCCCCCccE
Q 020933 129 KVLVIGGGDGGVLREV--SRHSSVEKIDICEIDKMVVDVSKQFFPDVA--VGFE-DPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l--~~~~~~~~v~~VEid~~vi~~ak~~~~~~~--~~~~-~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
+|.+||+|.++.+... ++. ..+|+....+++.++..++.-.... .+.. .+++.+ ..|..+.++ ..|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~-----~ad~ 72 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALE-----DADI 72 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHT-----T-SE
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhC-----cccE
Confidence 5889999998876653 334 3689999999988887665432110 0101 134544 567666553 3589
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
|++-.+.. ..+++++.+...|+++=.++.....
T Consensus 73 IiiavPs~-------~~~~~~~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 73 IIIAVPSQ-------AHREVLEQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp EEE-S-GG-------GHHHHHHHHTTTSHTT-EEEETS-S
T ss_pred EEecccHH-------HHHHHHHHHhhccCCCCEEEEecCC
Confidence 99655431 2467899999999776666654433
No 351
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=91.58 E-value=1.8 Score=40.60 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=62.1
Q ss_pred CCCceeeEeec--cccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE-cChHHHHHhCCCCCc
Q 020933 125 PNPKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~-~D~~~~l~~~~~~~f 201 (319)
..+.+||+.|+ |.|..+.++++..+ .+|+++..+++-.+.+++.+.. +.-+.... .|..+.+.....+.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G-~~Vi~~~~~~~~~~~~~~~lGa------~~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKG-CYVVGSAGSDEKVDLLKNKLGF------DDAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHhcCC------ceeEEcCCcccHHHHHHHhCCCCc
Confidence 45689999985 55667777888765 4688888888888888764321 11111111 133333333223579
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|+|+ |... ...++.+.+.|+++|.++.-
T Consensus 223 d~v~-d~~g----------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYF-DNVG----------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEE-ECCC----------HHHHHHHHHHhccCcEEEEe
Confidence 9988 3322 13577888999999999864
No 352
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.50 E-value=1.1 Score=41.50 Aligned_cols=102 Identities=23% Similarity=0.251 Sum_probs=60.6
Q ss_pred ceeeEeeccccHHH--HHHHhcCCCceEEEEECChHHHHHHHhcccccc------CCCC--------CCCeEEEEcChHH
Q 020933 128 KKVLVIGGGDGGVL--REVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA------VGFE--------DPRVTLHIGDGVA 191 (319)
Q Consensus 128 ~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~------~~~~--------~~~v~v~~~D~~~ 191 (319)
++|.+||+|.-+.+ ..+++. ..+|+++|++++.++.+++.+.... ..+. ..++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 57999999965543 334444 2579999999998887765532110 0010 023332 234333
Q ss_pred HHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 192 FLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 192 ~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
.+ ..-|+||.-.+.... ...++|+.+...++++-+++.++.
T Consensus 81 a~-----~~aDlVieavpe~~~-----~k~~~~~~l~~~~~~~~ii~sntS 121 (287)
T PRK08293 81 AV-----KDADLVIEAVPEDPE-----IKGDFYEELAKVAPEKTIFATNSS 121 (287)
T ss_pred Hh-----cCCCEEEEeccCCHH-----HHHHHHHHHHhhCCCCCEEEECcc
Confidence 22 346999966553211 245778888888888877766553
No 353
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=91.49 E-value=1.9 Score=41.14 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEc--ChHHHHHhCCCCCc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG--DGVAFLKAVPEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~--D~~~~l~~~~~~~f 201 (319)
..+.+||++|+|. |..+.++++..+..+|++++.+++-.+.+++. .. +.-+..... |..+.+.....+.+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GA------TDCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CEEEcccccchHHHHHHHHHhCCCC
Confidence 4568999998643 33455567766555799999999998888653 21 111111111 23333333223479
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCC-cEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~Lkpg-G~lv~~~ 241 (319)
|+|+- ... ....++...+.|+++ |.++.-.
T Consensus 258 d~vid-~~g---------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 258 DYTFE-CIG---------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred cEEEE-CCC---------ChHHHHHHHHhhccCCCeEEEEc
Confidence 99883 221 124577788899987 9888643
No 354
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.33 E-value=1.8 Score=41.17 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=65.3
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
...+|.++|+|. |..+..-++..+..+|++||+++.-+++|+++=... .++..... |..+.+.+..+.-.|..
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~--~vn~~~~~----~vv~~i~~~T~gG~d~~ 258 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATH--FVNPKEVD----DVVEAIVELTDGGADYA 258 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCce--eecchhhh----hHHHHHHHhcCCCCCEE
Confidence 456888888875 444444456567789999999999999999873321 01110111 66666665544467777
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
| |... ..+.++....+++++|..++-.
T Consensus 259 ~-e~~G---------~~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 259 F-ECVG---------NVEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred E-EccC---------CHHHHHHHHHHHhcCCeEEEEe
Confidence 5 2222 2357888888899999887653
No 355
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.23 E-value=0.18 Score=45.88 Aligned_cols=46 Identities=24% Similarity=0.436 Sum_probs=36.2
Q ss_pred CceeeEeeccccHHHHHHHhcC--------CCceEEEEECChHHHHHHHhcccc
Q 020933 127 PKKVLVIGGGDGGVLREVSRHS--------SVEKIDICEIDKMVVDVSKQFFPD 172 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~--------~~~~v~~VEid~~vi~~ak~~~~~ 172 (319)
+-+|+|+|+|+|.++..+++.. ...+++.||++|.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 5799999999999998887631 235899999999999999988765
No 356
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.18 E-value=1.8 Score=40.81 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=60.1
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCcc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fD 202 (319)
..+.+||+.|+|. |..+.++++..+..+|.+++.+++-.+.++++ .. +.-+.....|..+.+... ..+.+|
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~l~~~~~~~~~d 243 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA------TIVLDPTEVDVVAEVRKLTGGGGVD 243 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC------CEEECCCccCHHHHHHHHhCCCCCC
Confidence 3567899997542 33445556665545789999999888888663 21 111112223333333322 234599
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|+-.... ...++.+.+.|+++|.++.-.
T Consensus 244 ~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 244 VSFDCAGV----------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred EEEECCCC----------HHHHHHHHHhccCCCEEEEEc
Confidence 98843211 235778889999999988653
No 357
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.16 E-value=1.7 Score=41.58 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=60.1
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE--cChHHHHHhCCCCCc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI--GDGVAFLKAVPEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~--~D~~~~l~~~~~~~f 201 (319)
....+||+.|+|. |..+.++++..+..+|++++.+++-.+.+++. .. +.-+.... .+..+.+.+...+.+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~g~ 256 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL-GA------TDCVNPNDYDKPIQEVIVEITDGGV 256 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC------CeEEcccccchhHHHHHHHHhCCCC
Confidence 4567999998754 44556677776655899999999999988764 11 11111111 122222322213368
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCC-cEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~Lkpg-G~lv~~~ 241 (319)
|+|+- ... ....+....+.|+++ |.+++-.
T Consensus 257 d~vid-~~G---------~~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 257 DYSFE-CIG---------NVNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred CEEEE-CCC---------CHHHHHHHHHHhhcCCCeEEEEe
Confidence 98883 222 124567778889886 9887643
No 358
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=91.07 E-value=4 Score=31.95 Aligned_cols=108 Identities=22% Similarity=0.290 Sum_probs=67.3
Q ss_pred eeeEeeccccHHHH--HHHhcCCCceEE-EEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 129 KVLVIGGGDGGVLR--EVSRHSSVEKID-ICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 129 ~VL~IG~G~G~~~~--~l~~~~~~~~v~-~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+|..||+|..+... .+.+..+..+++ ++|.+++-.+.+.+.+. +. ...|..+.+.. ...|+|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~----------~~-~~~~~~~ll~~---~~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG----------IP-VYTDLEELLAD---EDVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT----------SE-EESSHHHHHHH---TTESEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc----------cc-chhHHHHHHHh---hcCCEEE
Confidence 78999998764333 334443445655 57999987776655432 23 66777777763 4799999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhh
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQI 261 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 261 (319)
+..+.. .-++.+.++|+-|--+++.- ....+.+..+++.+..++.
T Consensus 68 I~tp~~----------~h~~~~~~~l~~g~~v~~EK-P~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 68 IATPPS----------SHAEIAKKALEAGKHVLVEK-PLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EESSGG----------GHHHHHHHHHHTTSEEEEES-SSSSSHHHHHHHHHHHHHH
T ss_pred EecCCc----------chHHHHHHHHHcCCEEEEEc-CCcCCHHHHHHHHHHHHHh
Confidence 765542 12566667777666555542 2234566677777766653
No 359
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.98 E-value=2.9 Score=41.06 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=59.2
Q ss_pred ceeeEeeccccHHHHH--HHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh----------
Q 020933 128 KKVLVIGGGDGGVLRE--VSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA---------- 195 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~---------- 195 (319)
.+|.+||.|..+.... +++.. .+|+++|+|++.++..++-.. .+...+..+.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~~-----------~~~e~~l~~~l~~~~~~g~l~~~ 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGEI-----------HIVEPDLDMVVKTAVEGGYLRAT 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCCC-----------CcCCCCHHHHHHHHhhcCceeee
Confidence 5799999997554444 44543 579999999998886443211 1111111111110
Q ss_pred CCCCCccEEEEcCCCCCCC---ccccchHHHHHHHHHhcCCCcEEEEecCCc
Q 020933 196 VPEGTYDAVIVDSSDPIGP---AQELFEKPFFESVAKALRPGGVVSTQAESI 244 (319)
Q Consensus 196 ~~~~~fDvIi~D~~~~~~~---~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~ 244 (319)
...+.-|+||+..+.|... +.--...+..+.+.+.|++|-+++..+..+
T Consensus 71 ~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 71 TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 0012579999866655311 111123345677888999888777765433
No 360
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.88 E-value=3.2 Score=41.47 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=63.2
Q ss_pred eeeEeeccccHHHHH--HHhcCCCceEEEEECChHHHHHHHhcccccc-CCCC-------CCCeEEEEcChHHHHHhCCC
Q 020933 129 KVLVIGGGDGGVLRE--VSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-VGFE-------DPRVTLHIGDGVAFLKAVPE 198 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-~~~~-------~~~v~v~~~D~~~~l~~~~~ 198 (319)
+|.+||.|-.++... ++++....+|+++|+|++.++..++-..... .++. ..++++- .|..+.+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~i----- 76 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKHV----- 76 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHHH-----
Confidence 689999998776655 4444334679999999999998776432210 0110 0012211 2211111
Q ss_pred CCccEEEEcCCCCCC--------CccccchHHHHHHHHHhcCCCcEEEEecCCccc
Q 020933 199 GTYDAVIVDSSDPIG--------PAQELFEKPFFESVAKALRPGGVVSTQAESIWL 246 (319)
Q Consensus 199 ~~fDvIi~D~~~~~~--------~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~ 246 (319)
..-|+||+....|.. .+.--+-....+.+.+.|++|-++++.+.-+-.
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G 132 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK 132 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence 345888775544332 111123456778888899887777766544433
No 361
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=90.85 E-value=0.52 Score=47.91 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCceeeEeeccccHHHHHHHhcCC-CceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH----H-HHhC-C
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSS-VEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA----F-LKAV-P 197 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~----~-l~~~-~ 197 (319)
.....||||||..|+...-.++..| ..-|++|||-|-- .-+++.-++.|+.. + ++.. .
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik---------------p~~~c~t~v~dIttd~cr~~l~k~l~ 107 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK---------------PIPNCDTLVEDITTDECRSKLRKILK 107 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc---------------cCCccchhhhhhhHHHHHHHHHHHHH
Confidence 4567899999999999888777544 4568899996631 11344444444421 1 1110 1
Q ss_pred CCCccEEEEcCCCCCCCc-------cccchHHHHHHHHHhcCCCcEEEEecCCcccChHHHHHHHHHHHhhc
Q 020933 198 EGTYDAVIVDSSDPIGPA-------QELFEKPFFESVAKALRPGGVVSTQAESIWLHMHIIEDIVANCRQIF 262 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~~~-------~~l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 262 (319)
.-+.|+|+.|.....+.. ....+...++.....|.-||.++.-.. ...-+..++..+.+.|
T Consensus 108 t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvf----rs~dy~~ll~v~~qLf 175 (780)
T KOG1098|consen 108 TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVF----RSEDYNGLLRVFGQLF 175 (780)
T ss_pred hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccc----cCCcchHHHHHHHHHH
Confidence 235699999877654431 122334557777889999999887542 2333445555666666
No 362
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.84 E-value=0.69 Score=42.89 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=60.6
Q ss_pred ceeeEeeccccHH--HHHHHhcCCCceEEEEECChHHHHHHHhcccccc-----CC-CCC-------CCeEEEEcChHHH
Q 020933 128 KKVLVIGGGDGGV--LREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FED-------PRVTLHIGDGVAF 192 (319)
Q Consensus 128 ~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-----~~-~~~-------~~v~v~~~D~~~~ 192 (319)
++|.+||+|.-+. +..+++. ..+|+++|.+++.++.+.+.+.... .+ +.. .++++. .|. +.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-ED 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HH
Confidence 5799999996553 3444544 2579999999998887654322110 00 000 123332 332 22
Q ss_pred HHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 193 l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+ ...|+||.-.+.... ....+|+.+...++++.+++.++.+
T Consensus 81 ~-----~~aD~Vieavpe~~~-----~k~~~~~~l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 81 L-----ADCDLVIEAATEDET-----VKRKIFAQLCPVLKPEAILATNTSS 121 (292)
T ss_pred h-----cCCCEEEEcCcCCHH-----HHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 2 356999965543211 1457788899999999888765543
No 363
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.78 E-value=2.3 Score=40.55 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=59.6
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEc--ChHHHHHhCCCCCc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG--DGVAFLKAVPEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~--D~~~~l~~~~~~~f 201 (319)
....+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+..... +..+.+.......+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga------~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GA------TDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC------CcEeccccccchHHHHHHHHhCCCC
Confidence 4568999998653 33445567776655899999999988888763 21 101111111 12233332223569
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCC-cEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~Lkpg-G~lv~~~ 241 (319)
|+|+- ... ....++...+.|+++ |.++...
T Consensus 256 d~vid-~~g---------~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 256 DYSFE-CTG---------NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CEEEE-CCC---------ChHHHHHHHHhcccCCCEEEEEc
Confidence 99883 221 124577788899885 9887653
No 364
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=90.75 E-value=2.6 Score=39.49 Aligned_cols=99 Identities=21% Similarity=0.284 Sum_probs=58.3
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh-CCCCCcc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~-~~~~~fD 202 (319)
.+..+||+.|+|. |..+.++++..+..+|++++.++.-.+.+++.-. +.-+.....+....+.. .....+|
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~v~~~~~~~~~~i~~~~~~~~~d 237 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA-------THTVNSAKGDAIEQVLELTDGRGVD 237 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-------CceeccccccHHHHHHHHhCCCCCC
Confidence 3567899876532 2234446666554678889999888887775421 11122222333222222 2235699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+|+ |... ....++.+.+.|+++|.++.-
T Consensus 238 ~vl-d~~g---------~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 238 VVI-EAVG---------IPATFELCQELVAPGGHIANV 265 (345)
T ss_pred EEE-ECCC---------CHHHHHHHHHhccCCcEEEEe
Confidence 988 3321 123577888999999999864
No 365
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.71 E-value=1.6 Score=40.69 Aligned_cols=96 Identities=25% Similarity=0.405 Sum_probs=58.3
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
...+||+.|+|. |..+..+++..+..+|++++.++...+.+++.-. +.-+.....+...... ..+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~-------~~vi~~~~~~~~~~~~--~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA-------DETVNLARDPLAAYAA--DKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC-------CEEEcCCchhhhhhhc--cCCCccEE
Confidence 567899988765 5566667776555478999999888887776421 0001000111112211 13459998
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+.-.. ....++.+.+.|+++|.++.-
T Consensus 236 ld~~g----------~~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASG----------APAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCC----------CHHHHHHHHHHHhcCCEEEEE
Confidence 84221 123578889999999999864
No 366
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=90.38 E-value=2.1 Score=37.86 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=42.0
Q ss_pred CCceeeEeeccccHHH--HHHHhcCCCceEEEEECC--hHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCc
Q 020933 126 NPKKVLVIGGGDGGVL--REVSRHSSVEKIDICEID--KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTY 201 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid--~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~f 201 (319)
..++||+||+|.=+.. +.+++.. .+|++|+.+ ++..++++ ..+++++.++..... -..+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~~~~~l~~l~~-----------~~~i~~~~~~~~~~d----l~~~ 70 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEELESELTLLAE-----------QGGITWLARCFDADI----LEGA 70 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHH-----------cCCEEEEeCCCCHHH----hCCc
Confidence 5679999999975443 3345543 678888554 44444432 137888887754321 2468
Q ss_pred cEEEEcCCC
Q 020933 202 DAVIVDSSD 210 (319)
Q Consensus 202 DvIi~D~~~ 210 (319)
|+||....+
T Consensus 71 ~lVi~at~d 79 (205)
T TIGR01470 71 FLVIAATDD 79 (205)
T ss_pred EEEEECCCC
Confidence 998865444
No 367
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=90.29 E-value=2.5 Score=40.26 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=60.2
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
...++||+.|+|. |..+..+++..+...+++++.++.-.+.+++.-. +.-+.....+..+.+.......+|+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-------~~~i~~~~~~~~~~v~~~~~~~~d~ 257 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-------THVINPKEEDLVAAIREITGGGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-------cEEecCCCcCHHHHHHHHhCCCCcE
Confidence 3467899997643 4455666776666679999999988887765311 0001111112222232221456999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+--... ...+..+.+.|+++|.++...
T Consensus 258 vld~~g~----------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTTGV----------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EEECCCC----------cHHHHHHHHHhccCCEEEEeC
Confidence 8832211 135778889999999988654
No 368
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.19 E-value=1.9 Score=44.62 Aligned_cols=71 Identities=17% Similarity=0.294 Sum_probs=48.6
Q ss_pred CceeeEeecccc-HHH-HHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH--HHHhCCCCCcc
Q 020933 127 PKKVLVIGGGDG-GVL-REVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTYD 202 (319)
Q Consensus 127 ~~~VL~IG~G~G-~~~-~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~--~l~~~~~~~fD 202 (319)
..+|+++|+|.= ... +.+.+. ..+++++|.|++.++.++++ ..+++.||+.+ .+++..-++.|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence 368999999863 322 333333 25799999999999988762 35789999864 45544346789
Q ss_pred EEEEcCCC
Q 020933 203 AVIVDSSD 210 (319)
Q Consensus 203 vIi~D~~~ 210 (319)
++++-..+
T Consensus 467 ~vvv~~~d 474 (621)
T PRK03562 467 VLINAIDD 474 (621)
T ss_pred EEEEEeCC
Confidence 88875544
No 369
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.12 E-value=2.4 Score=39.63 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=53.9
Q ss_pred ceeeEeeccccH--HHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 128 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+|.+||+|.-+ ++..+.+.....+|+++|.+++..+.+++. +..+ . ...+..+.+ ...|+||
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~------g~~~---~-~~~~~~~~~-----~~aDvVi 71 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL------GLGD---R-VTTSAAEAV-----KGADLVI 71 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC------CCCc---e-ecCCHHHHh-----cCCCEEE
Confidence 589999988633 334444443224799999999887777642 1101 1 122322222 3579999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
+-.+... ..++++.+...++++.+++.
T Consensus 72 iavp~~~-------~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 72 LCVPVGA-------SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ECCCHHH-------HHHHHHHHHhhCCCCCEEEe
Confidence 6654321 34567777788888876653
No 370
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=90.03 E-value=1.3 Score=43.26 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=56.7
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA 195 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~ 195 (319)
..+.-|.|+-||.|-++.-+++.. .+|++-|++|++++..+.+.+.+ -.+..+++++..|+..|+++
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lN--kv~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLN--KVDPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhcccc--ccchhheeeecccHHHHhhc
Confidence 356789999999999999888774 79999999999999999998765 23445599999999999963
No 371
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=89.87 E-value=2.7 Score=39.98 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=59.6
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE--cChHHHHHhCCCCCc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI--GDGVAFLKAVPEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~--~D~~~~l~~~~~~~f 201 (319)
....+||+.|+|. |..+.++++..+..+|++++.+++-.+.+++. .. +.-+.... .+..+.+.....+.+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga------~~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GV------TEFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------ceEEcccccchhHHHHHHHHhCCCC
Confidence 4567999998643 33445567766655899999999999988763 21 10111111 012222332223468
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCC-cEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~Lkpg-G~lv~~~ 241 (319)
|+|+ |... ....+....+.++++ |.+++..
T Consensus 259 d~vi-d~~G---------~~~~~~~~~~~~~~~~g~~v~~g 289 (369)
T cd08301 259 DYSF-ECTG---------NIDAMISAFECVHDGWGVTVLLG 289 (369)
T ss_pred CEEE-ECCC---------ChHHHHHHHHHhhcCCCEEEEEC
Confidence 9877 3221 124577788899996 9888653
No 372
>PRK10637 cysG siroheme synthase; Provisional
Probab=89.78 E-value=1.8 Score=43.02 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=45.9
Q ss_pred HhccccCCCCCceeeEeeccccHHHHH--HHhcCCCceEEEE--ECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH
Q 020933 117 THLPLCSIPNPKKVLVIGGGDGGVLRE--VSRHSSVEKIDIC--EIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF 192 (319)
Q Consensus 117 ~~l~l~~~~~~~~VL~IG~G~G~~~~~--l~~~~~~~~v~~V--Eid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~ 192 (319)
.++|+...-+.++||++|+|.=+.-+. +++.. .+|++| |+++++.+++++ .+++++..+...-
T Consensus 2 ~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~g--a~v~visp~~~~~~~~l~~~-----------~~i~~~~~~~~~~ 68 (457)
T PRK10637 2 DHLPIFCQLRDRDCLLVGGGDVAERKARLLLDAG--ARLTVNALAFIPQFTAWADA-----------GMLTLVEGPFDES 68 (457)
T ss_pred CeeceEEEcCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCCCHHHHHHHhC-----------CCEEEEeCCCChH
Confidence 345665555789999999997654333 44443 567776 777777655432 3677776553321
Q ss_pred HHhCCCCCccEEEEcCCC
Q 020933 193 LKAVPEGTYDAVIVDSSD 210 (319)
Q Consensus 193 l~~~~~~~fDvIi~D~~~ 210 (319)
. -..+++||....+
T Consensus 69 d----l~~~~lv~~at~d 82 (457)
T PRK10637 69 L----LDTCWLAIAATDD 82 (457)
T ss_pred H----hCCCEEEEECCCC
Confidence 1 1346777765443
No 373
>PRK13699 putative methylase; Provisional
Probab=89.52 E-value=0.64 Score=41.75 Aligned_cols=47 Identities=15% Similarity=0.011 Sum_probs=40.1
Q ss_pred CCCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccc
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV 173 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~ 173 (319)
..+..|||--||+|..+....+.. .+..++|++++..+.+++++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHH
Confidence 456789999999999998888774 57899999999999999887543
No 374
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.42 E-value=1.6 Score=40.69 Aligned_cols=102 Identities=13% Similarity=0.243 Sum_probs=57.8
Q ss_pred ceeeEeeccccH--HHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCC--------CCeEEEEcChHHHHHhCC
Q 020933 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFED--------PRVTLHIGDGVAFLKAVP 197 (319)
Q Consensus 128 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~--------~~v~v~~~D~~~~l~~~~ 197 (319)
++|.+||+|.-+ ++..+++.. .+|+++|.+++.++.+++.+......... .++++ ..|..+.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~---- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG--LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV---- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh----
Confidence 579999999644 444455442 57999999999988777642111000000 11222 23322222
Q ss_pred CCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 198 EGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
...|+||.-.+.... ...++++.+...++++-+++.++.
T Consensus 78 -~~aDlVi~av~~~~~-----~~~~v~~~l~~~~~~~~ii~s~ts 116 (311)
T PRK06130 78 -SGADLVIEAVPEKLE-----LKRDVFARLDGLCDPDTIFATNTS 116 (311)
T ss_pred -ccCCEEEEeccCcHH-----HHHHHHHHHHHhCCCCcEEEECCC
Confidence 346999966543211 134678888887777666655543
No 375
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.38 E-value=1.6 Score=41.43 Aligned_cols=103 Identities=13% Similarity=0.160 Sum_probs=62.6
Q ss_pred CceeeEeeccccH--HHHHHHhcCCCceEEEEECChHHHHHHHhcccccc-----CCC----CCCCeEEEEcChHHHHHh
Q 020933 127 PKKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VGF----EDPRVTLHIGDGVAFLKA 195 (319)
Q Consensus 127 ~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-----~~~----~~~~v~v~~~D~~~~l~~ 195 (319)
-++|-+||+|+-+ ++..++.. ..+|+..|++++.++.+++.+.... .+. ...++++. .|..+.+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av-- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV-- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence 3689999999543 44445554 3689999999998876655432110 000 01233433 2322222
Q ss_pred CCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 196 VPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 196 ~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
..-|+|+-..+.... ...++|+.+-+.++|+-+|..++.
T Consensus 82 ---~~aDlViEavpE~l~-----vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 ---ADADFIQESAPEREA-----LKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred ---cCCCEEEECCcCCHH-----HHHHHHHHHHHhCCCCeEEEECCC
Confidence 346999965544222 256789999999999987776654
No 376
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.36 E-value=4.3 Score=39.37 Aligned_cols=107 Identities=11% Similarity=0.139 Sum_probs=61.0
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE---cChHHHHHhC-CCC
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI---GDGVAFLKAV-PEG 199 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~---~D~~~~l~~~-~~~ 199 (319)
....+||+.|+|. |..+..+++..+...|+++|.+++-++.+++. .. . .+.. .+..+.+... ...
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga--------~-~v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GC--------E-TVDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CC--------e-EEecCCcccHHHHHHHHcCCC
Confidence 3567899877653 33445567766666677789999889988874 21 1 1211 1333333322 234
Q ss_pred CccEEEEcCCCCCC-C-c--cccchHHHHHHHHHhcCCCcEEEEec
Q 020933 200 TYDAVIVDSSDPIG-P-A--QELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 200 ~fDvIi~D~~~~~~-~-~--~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
.+|+||--.-.+.. . . ..-.....++...+.+++||.+++-.
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 69998842221100 0 0 00001136888889999999998754
No 377
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=89.28 E-value=2.1 Score=43.11 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=68.6
Q ss_pred ceeeEeeccccHHHHHHHhcC----CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 128 KKVLVIGGGDGGVLREVSRHS----SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~----~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
..|.+..||+|+++....+.. ....+++-|+.+.+...++.++-.. +.....+.+..+|...-.......+||+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~--~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH--NIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc--CCCccccCcccCCcCCCccccccccCCE
Confidence 589999999999987654421 2346899999999999999874322 1111233444455332111112357999
Q ss_pred EEEcCCCCC----C--Cc---------------cccchHHHHHHHHHhcCCCcEEEEe
Q 020933 204 VIVDSSDPI----G--PA---------------QELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 204 Ii~D~~~~~----~--~~---------------~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|+.+++... + ++ ..-....|+..+..+|++||...+-
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 998775321 0 00 0012356888999999999975443
No 378
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=89.18 E-value=3.7 Score=39.11 Aligned_cols=93 Identities=20% Similarity=0.240 Sum_probs=52.2
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHH-HHHHhccccccCCCCCCCeEEEE-cChHHHHHhCCCCCcc
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVV-DVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYD 202 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi-~~ak~~~~~~~~~~~~~~v~v~~-~D~~~~l~~~~~~~fD 202 (319)
...+||+.|+|. |..+.++++..+ .+|++++.+++-. +.+++. .. + .++. .+. +.+... .+.+|
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~~~~~~~~~~~~~~-Ga------~---~vi~~~~~-~~~~~~-~~~~D 249 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFG-LKVTVISSSSNKEDEAINRL-GA------D---SFLVSTDP-EKMKAA-IGTMD 249 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCcchhhhHHHhC-CC------c---EEEcCCCH-HHHHhh-cCCCC
Confidence 467899988653 445566677654 4678887776543 333332 11 0 1111 111 122222 23589
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|+ |... ....++.+.+.|+++|.++.-.
T Consensus 250 ~vi-d~~g---------~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 250 YII-DTVS---------AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred EEE-ECCC---------CHHHHHHHHHHhcCCcEEEEeC
Confidence 888 3332 1235777889999999988643
No 379
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.98 E-value=2.1 Score=41.63 Aligned_cols=72 Identities=24% Similarity=0.338 Sum_probs=45.0
Q ss_pred ceeeEeeccc-cHHHHH-HHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH--HHhCCCCCccE
Q 020933 128 KKVLVIGGGD-GGVLRE-VSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF--LKAVPEGTYDA 203 (319)
Q Consensus 128 ~~VL~IG~G~-G~~~~~-l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~--l~~~~~~~fDv 203 (319)
.+||+||||. |....+ |+++ +..+|++.|.+++-.+.+.... .++++.+.-|+.+. +... -..+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~l-i~~~d~ 71 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVAL-IKDFDL 71 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHH-HhcCCE
Confidence 5899999954 332222 3334 4579999999988777665542 23777777776543 2222 245699
Q ss_pred EEEcCC
Q 020933 204 VIVDSS 209 (319)
Q Consensus 204 Ii~D~~ 209 (319)
||.-.+
T Consensus 72 VIn~~p 77 (389)
T COG1748 72 VINAAP 77 (389)
T ss_pred EEEeCC
Confidence 986444
No 380
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.90 E-value=2.6 Score=39.03 Aligned_cols=100 Identities=13% Similarity=0.310 Sum_probs=58.5
Q ss_pred ceeeEeeccccH--HHHHHHhcCCCceEEEEECChHHHHHHHhccccc-------c-CC-CC-------CCCeEEEEcCh
Q 020933 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV-------A-VG-FE-------DPRVTLHIGDG 189 (319)
Q Consensus 128 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~-------~-~~-~~-------~~~v~v~~~D~ 189 (319)
++|.+||+|.-+ ++..++++. .+|+++|.+++.++.+++.+... . .+ .. ..++... .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 579999999643 444455553 47999999999988765532210 0 00 00 0122221 222
Q ss_pred HHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 190 VAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 190 ~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+-+ ...|+||.-.+.... ...++|+.+.+.++|+.+++.++
T Consensus 81 -~~~-----~~aDlVieav~e~~~-----~k~~~~~~l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -ESL-----SDADFIVEAVPEKLD-----LKRKVFAELERNVSPETIIASNT 121 (291)
T ss_pred -HHh-----CCCCEEEEcCcCcHH-----HHHHHHHHHHhhCCCCeEEEEcC
Confidence 111 346999865543221 14578888999999988877554
No 381
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.81 E-value=1.2 Score=39.08 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=23.4
Q ss_pred CCceeeEeeccc-cHH-HHHHHhcCCCceEEEEECC
Q 020933 126 NPKKVLVIGGGD-GGV-LREVSRHSSVEKIDICEID 159 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid 159 (319)
...+||++|+|. |.. +..|++. +..+++.+|.|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCC
Confidence 446999999985 443 3334444 67899999988
No 382
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.76 E-value=3.2 Score=38.50 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=58.0
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHH--HhCCCCCc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFL--KAVPEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l--~~~~~~~f 201 (319)
....+||++|+|. |..+.++++..+...|++++.+++..+.++++-. + .++..+-..+. +....+.+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-------~---~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA-------T---ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------e---EEecCCCCCHHHHHHhcCCCC
Confidence 3557999997642 4455566666554458889999988887765321 0 12211111111 11224679
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|+|+.... ....++.+.+.|+++|.++.-
T Consensus 228 d~v~~~~~----------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 228 DVVIEATG----------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred cEEEECCC----------ChHHHHHHHHHHhcCCEEEEE
Confidence 99984321 124677888999999998764
No 383
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.75 E-value=0.85 Score=44.26 Aligned_cols=59 Identities=25% Similarity=0.472 Sum_probs=45.8
Q ss_pred CCeEEEEcChHHHHHhCCCCCccEEEE-cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 180 PRVTLHIGDGVAFLKAVPEGTYDAVIV-DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 180 ~~v~v~~~D~~~~l~~~~~~~fDvIi~-D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
.++++++++..++++..+++++|..++ |..+-..+ . . ..+.++.+.+.++|||.++..+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~-~-~-~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDP-E-Q-LNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCH-H-H-HHHHHHHHHHHhCCCCEEEEee
Confidence 699999999999998777899997664 65542222 1 1 3467889999999999999875
No 384
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.75 E-value=1.4 Score=40.97 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=62.3
Q ss_pred ceeeEeeccccH--HHHHHHhcCCCceEEEEECChHHHHHHHhcccccc-----CC-CCC-------CCeEEEEcChHHH
Q 020933 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FED-------PRVTLHIGDGVAF 192 (319)
Q Consensus 128 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-----~~-~~~-------~~v~v~~~D~~~~ 192 (319)
++|-+||+|.-+ ++..+++. ..+|+.+|.+++.++.+++.+.... .+ ... .++++ ..|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH
Confidence 489999999544 44455555 3689999999999988665533210 00 000 12322 2332 22
Q ss_pred HHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhc-CCCcEEEEecCC
Q 020933 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKAL-RPGGVVSTQAES 243 (319)
Q Consensus 193 l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~L-kpgG~lv~~~~~ 243 (319)
+ ...|+||-..++... .+.++|..+.+.+ +|+.+++.++.+
T Consensus 82 ~-----~~~d~ViEav~E~~~-----~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 82 F-----ADRQLVIEAVVEDEA-----VKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred h-----CCCCEEEEecccCHH-----HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 2 346999855443221 2567888999988 888888877643
No 385
>PRK10083 putative oxidoreductase; Provisional
Probab=88.47 E-value=4.3 Score=37.82 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=57.4
Q ss_pred CCCceeeEeeccc-cHHHHHHHhc-CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRH-SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~-~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
....+||+.|+|. |..+.++++. .+...+.+++.+++-.+.++++-.. .-+.....+..+.+... ...+|
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~-------~~i~~~~~~~~~~~~~~-g~~~d 230 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGAD-------WVINNAQEPLGEALEEK-GIKPT 230 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCc-------EEecCccccHHHHHhcC-CCCCC
Confidence 3567999999543 2233445553 3556788899999998888875221 11111122333333321 22356
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|+ |... ....++...+.|+++|.++.-.
T Consensus 231 ~vi-d~~g---------~~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 231 LII-DAAC---------HPSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred EEE-ECCC---------CHHHHHHHHHHhhcCCEEEEEc
Confidence 666 3322 1235778889999999998643
No 386
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=88.20 E-value=4.8 Score=37.56 Aligned_cols=99 Identities=20% Similarity=0.223 Sum_probs=58.2
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.+..+||+.|+|. |..+..+++..+...|+++.-+++..+..+++ .. +.-+........++........+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GA------DDTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CC------CEEecCccccHHHHHHHhCCCCCCE
Confidence 3567899997654 55556677766554588888888877776543 11 1011111111122222222345999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|+.... ....+..+.++|+++|.++.-
T Consensus 231 vld~~g----------~~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 231 VIEAAG----------SPATIEQALALARPGGKVVLV 257 (343)
T ss_pred EEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 983321 124578889999999998864
No 387
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.12 E-value=4.8 Score=36.07 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=47.1
Q ss_pred CCCceeeEeeccccHHHHHHHhc--CCCceEEEEECC-hHHHHHHHhccccccCCCCCCCeEEEEcC-h---HHHHHhCC
Q 020933 125 PNPKKVLVIGGGDGGVLREVSRH--SSVEKIDICEID-KMVVDVSKQFFPDVAVGFEDPRVTLHIGD-G---VAFLKAVP 197 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid-~~vi~~ak~~~~~~~~~~~~~~v~v~~~D-~---~~~l~~~~ 197 (319)
..++.||+.||..|+++.++++. -....|.++--. +.|.+++.++- . ...++.+-..| . ..+++..+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~g-l-----~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFG-L-----KPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhC-C-----eeEEeccCChHHHHHHHHHHhhCC
Confidence 46789999999999999888773 234567766544 34556664431 1 11111111111 1 12334445
Q ss_pred CCCccEEEEcCCCC
Q 020933 198 EGTYDAVIVDSSDP 211 (319)
Q Consensus 198 ~~~fDvIi~D~~~~ 211 (319)
+++.|+.+.++-.+
T Consensus 79 ~Gkld~L~NNAG~~ 92 (289)
T KOG1209|consen 79 DGKLDLLYNNAGQS 92 (289)
T ss_pred CCceEEEEcCCCCC
Confidence 78999999765443
No 388
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.00 E-value=1.7 Score=40.36 Aligned_cols=102 Identities=17% Similarity=0.249 Sum_probs=59.7
Q ss_pred ceeeEeeccccH--HHHHHHhcCCCceEEEEECChHHHHHHHhccccc----c-CC-CCC-------CCeEEEEcChHHH
Q 020933 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV----A-VG-FED-------PRVTLHIGDGVAF 192 (319)
Q Consensus 128 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~----~-~~-~~~-------~~v~v~~~D~~~~ 192 (319)
++|.+||+|.-+ ++..+++.. .+|+++|.+++.++.+++.+... . .+ ... .++. ...|. +-
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~~ 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG--MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-EE 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-HH
Confidence 579999999533 445555553 68999999999887665443211 0 00 000 0122 22232 22
Q ss_pred HHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 193 l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+ ..-|+||.-.++.... ...+|+.+...++|+.+++.++.+
T Consensus 81 ~-----~~aD~Vieav~e~~~~-----k~~v~~~l~~~~~~~~il~s~tS~ 121 (295)
T PLN02545 81 L-----RDADFIIEAIVESEDL-----KKKLFSELDRICKPSAILASNTSS 121 (295)
T ss_pred h-----CCCCEEEEcCccCHHH-----HHHHHHHHHhhCCCCcEEEECCCC
Confidence 2 3459999765532211 456788888899998887766544
No 389
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.97 E-value=4.8 Score=39.51 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=54.9
Q ss_pred CCceeeEeeccccH-HHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.+++|+++|+|.=+ ....+++..+. +|+++|+|+.-.+.|++. ++ +.. +..+.+ ...|+|
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~------G~-----~~~--~~~e~v-----~~aDVV 261 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME------GY-----EVM--TMEEAV-----KEGDIF 261 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc------CC-----EEc--cHHHHH-----cCCCEE
Confidence 57899999999744 33445555554 799999999888877763 11 111 112222 347998
Q ss_pred EEcCCCCCCCccccchHHHHHH-HHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFES-VAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~-~~~~LkpgG~lv~~~ 241 (319)
|.-. . ....+.. ..+.+|+||+++...
T Consensus 262 I~at-G---------~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTT-G---------NKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECC-C---------CHHHHHHHHHhcCCCCcEEEEeC
Confidence 8432 1 1234544 478899999887654
No 390
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.81 E-value=2 Score=39.94 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=54.8
Q ss_pred ceeeEeeccc--cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 128 KKVLVIGGGD--GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 128 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
.+|+++|.|. |.+++.+.+......|++.|.+..-++.+.+. . ..+. ...+ ..... ....|+||
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-g-----v~d~----~~~~---~~~~~-~~~aD~Vi 69 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-G-----VIDE----LTVA---GLAEA-AAEADLVI 69 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-C-----cccc----cccc---hhhhh-cccCCEEE
Confidence 5799999884 44556665555556688888888777766542 1 1110 0011 11111 35689999
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEE
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv 238 (319)
+..+ ... +.++++++...|++|-+++
T Consensus 70 vavP--i~~-----~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 70 VAVP--IEA-----TEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred Eecc--HHH-----HHHHHHHhcccCCCCCEEE
Confidence 6543 332 5678888888888877665
No 391
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.78 E-value=4.1 Score=38.30 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=56.6
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
....+||+.|+|. |..+.++++..+ .+|++++.+++-.+.+++.=. + .++.. .+ ...+.+|+
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~Ga------~----~vi~~--~~----~~~~~~d~ 226 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALALGA------A----SAGGA--YD----TPPEPLDA 226 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHhCC------c----eeccc--cc----cCcccceE
Confidence 3567999999653 445566777655 469999999998888887421 1 11110 00 11245887
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++..... ...++...+.|+++|.+++-.
T Consensus 227 ~i~~~~~----------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 227 AILFAPA----------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EEECCCc----------HHHHHHHHHhhCCCcEEEEEe
Confidence 6632211 135778889999999998743
No 392
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.69 E-value=3.9 Score=41.62 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=59.6
Q ss_pred ceeeEeeccccHHHHHHHhc--CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH--HHHhCCCCCccE
Q 020933 128 KKVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTYDA 203 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~--~l~~~~~~~fDv 203 (319)
.+|+++|+|. +++.+++. ....+++.+|.|++.++.+++. ...++.+|+.+ .+++..-++.|.
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 5899999875 33333331 1125799999999998887752 46788999865 344443468898
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecC
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
+++...+.. .....-.+.+.+.|+-.++..+.
T Consensus 485 viv~~~~~~-------~~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 485 LLLTIPNGY-------EAGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred EEEEcCChH-------HHHHHHHHHHHHCCCCeEEEEEC
Confidence 876544421 11123334455678877776553
No 393
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.54 E-value=1.8 Score=41.29 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=23.5
Q ss_pred CceeeEeeccc-cH-HHHHHHhcCCCceEEEEECCh
Q 020933 127 PKKVLVIGGGD-GG-VLREVSRHSSVEKIDICEIDK 160 (319)
Q Consensus 127 ~~~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 160 (319)
.++||+||+|. |. ++..|++. ++.+++.||-|.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 46899999985 33 33334444 678999999985
No 394
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=87.47 E-value=0.88 Score=43.56 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=40.9
Q ss_pred CCCCceeeEeeccccHHHHHHHhc----C----CCceEEEEECChHHHHHHHhccccc
Q 020933 124 IPNPKKVLVIGGGDGGVLREVSRH----S----SVEKIDICEIDKMVVDVSKQFFPDV 173 (319)
Q Consensus 124 ~~~~~~VL~IG~G~G~~~~~l~~~----~----~~~~v~~VEid~~vi~~ak~~~~~~ 173 (319)
.|.+-.+++||.|.|.++.-+++. . ...++..||+|++..+.-|+.+...
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 456678999999999998887663 2 3678999999999999888887654
No 395
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.20 E-value=3.9 Score=42.16 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=60.2
Q ss_pred ceeeEeeccccH-H-HHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH--HHHhCCCCCccE
Q 020933 128 KKVLVIGGGDGG-V-LREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTYDA 203 (319)
Q Consensus 128 ~~VL~IG~G~G~-~-~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~--~l~~~~~~~fDv 203 (319)
.+|+++|+|.=+ . ++.+.++ ..+++++|.|++.++.++++ ...++.||+.+ .+++..-++.|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 579999887533 2 2233333 35799999999999988752 35688899864 455543467898
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
|++-..+... + ...-...|.+.|+-.++..+.+
T Consensus 468 vv~~~~d~~~------n-~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 468 IVITCNEPED------T-MKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred EEEEeCCHHH------H-HHHHHHHHHHCCCCeEEEEeCC
Confidence 8875544211 1 1222334557788777765543
No 396
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.14 E-value=2.1 Score=37.51 Aligned_cols=67 Identities=22% Similarity=0.379 Sum_probs=42.6
Q ss_pred CCCCCceeeEeecc-ccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCc
Q 020933 123 SIPNPKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTY 201 (319)
Q Consensus 123 ~~~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~f 201 (319)
..+.+++||++|.= +|....+++.. ..+|+.+||.|.+ |.+++ ++++|..+ +. ...+.+
T Consensus 41 ~~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~----r~~lp--------~~v~Fr~~-----~~-~~~G~~ 100 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFM----RGFLP--------NNVKFRNL-----LK-FIRGEV 100 (254)
T ss_pred cccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHH----HhcCC--------CCccHhhh-----cC-CCCCce
Confidence 34578999999974 56666666544 4689999999977 33443 23444332 22 135778
Q ss_pred cEEEEcCCC
Q 020933 202 DAVIVDSSD 210 (319)
Q Consensus 202 DvIi~D~~~ 210 (319)
|+|+ |.+.
T Consensus 101 Dliv-DlTG 108 (254)
T COG4017 101 DLIV-DLTG 108 (254)
T ss_pred eEEE-eccc
Confidence 8876 4443
No 397
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=87.03 E-value=1.1 Score=41.97 Aligned_cols=113 Identities=17% Similarity=0.151 Sum_probs=63.3
Q ss_pred ceeeEeeccccHHHHHHHhcC--------------------CCceEEEEECC--hHHHHHHHhccccc------------
Q 020933 128 KKVLVIGGGDGGVLREVSRHS--------------------SVEKIDICEID--KMVVDVSKQFFPDV------------ 173 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~--------------------~~~~v~~VEid--~~vi~~ak~~~~~~------------ 173 (319)
.+||.||+|.|+-...++... +..+|+.|||- ..|++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 599999999988655544321 01389999997 45666666555432
Q ss_pred -cCCCCCCCeEEEEcChHHHHHhC-----CCCCccEEEEcCCCCC-CCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 174 -AVGFEDPRVTLHIGDGVAFLKAV-----PEGTYDAVIVDSSDPI-GPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 174 -~~~~~~~~v~v~~~D~~~~l~~~-----~~~~fDvIi~D~~~~~-~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
....+.-+++|.+.|+...-... .....|+|.+-.+-.. .....--+..|+..+-..++||-+|.+.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 00112346778888875543210 0113444432111000 0000011467999999999999887654
No 398
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=87.02 E-value=4.8 Score=37.82 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=57.3
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
++.+||+.|+|. |..+..+++..+..+|++++.++.-.+.++++ .. +.-+.....+..+.+.....+.+|+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA-GA------DVVVNGSDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------cEEecCCCccHHHHHHHHhCCCCcEE
Confidence 457899987543 44455567766656889999998888887653 21 00001011121222222212379999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+- ... ....++.+.+.|+++|.++..
T Consensus 248 id-~~g---------~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 248 ID-FVN---------NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EE-CCC---------CHHHHHHHHHHhhcCCeEEEE
Confidence 83 221 123577888999999999864
No 399
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=86.97 E-value=5.5 Score=37.15 Aligned_cols=98 Identities=20% Similarity=0.289 Sum_probs=60.5
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCcc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fD 202 (319)
....+||+.|+|. |..+..+++..+ .+|+++.-+++..+..+++-. +.-+.....+..+.+... ++..+|
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~~~g~-------~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFARELGA-------DDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHhCC-------CEEecCcccCHHHHHHHHhCCCCCC
Confidence 4567999998653 556666777654 578888888888887765321 111222222333333322 245699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+|+.... ....+..+.+.|+++|.++.-
T Consensus 230 ~vld~~g----------~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDATG----------NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EEEECCC----------CHHHHHHHHHHHhcCCEEEEE
Confidence 9984321 124678889999999998854
No 400
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.96 E-value=2.2 Score=39.33 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=25.6
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECCh
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 160 (319)
...+||++|+|. |....+.+.+.++.+++.+|.|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 456999999984 55555544455678999999884
No 401
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=86.95 E-value=5.4 Score=36.83 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=59.2
Q ss_pred CCceeeEeec--cccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 126 NPKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
...+||+.|+ +.|..+.++++..+ .+|+++..++.-.+.+++.+.. +.-+.....+..+.+.....+.+|+
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAGSDEKCRWLVEELGF------DAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhhcCC------ceEEecCChhHHHHHHHhccCCceE
Confidence 4579999984 45666667777654 4789999988888877764431 1111111112222222221356998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|+ |... ...++...+.|+++|.++..
T Consensus 218 vi-~~~g----------~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 218 YF-DNVG----------GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred EE-Ecch----------HHHHHHHHHhcCCCceEEEE
Confidence 88 3321 13577788899999998854
No 402
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=86.78 E-value=0.12 Score=40.91 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=26.9
Q ss_pred CccEEEEcCCCCCCCc--cccchHHHHHHHHHhcCCCcEEEEec
Q 020933 200 TYDAVIVDSSDPIGPA--QELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 200 ~fDvIi~D~~~~~~~~--~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+||+|++-+..-+.+- ..---..||+.+.+.|+|||+|++..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 4899997443222110 00113579999999999999999874
No 403
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=86.75 E-value=6.8 Score=37.60 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=57.9
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE---cChHHHHHh-CCCC
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI---GDGVAFLKA-VPEG 199 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~---~D~~~~l~~-~~~~ 199 (319)
....+||+.|+|. |..+..+++..+..+|++++.+++-.++++++-. +.-+.... .+..+.+.. ....
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~-------~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGA-------DYVFNPTKMRDCLSGEKVMEVTKGW 274 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------CEEEcccccccccHHHHHHHhcCCC
Confidence 4567899987643 2233445666555579999998887777776421 10111111 122222222 2235
Q ss_pred CccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 200 ~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
.+|+|+ |.... ....+..+.+.|+++|.++.-
T Consensus 275 gvDvvl-d~~g~--------~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 275 GADIQV-EAAGA--------PPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCEEE-ECCCC--------cHHHHHHHHHHHHcCCEEEEE
Confidence 699888 33221 124577888899999999864
No 404
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=86.48 E-value=8.9 Score=36.16 Aligned_cols=109 Identities=17% Similarity=0.303 Sum_probs=58.1
Q ss_pred CCCceeeEeeccc-cHHHHHHH-hcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVS-RHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~-~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
+.+.+|.+||+|. |......+ ...-..++..+|++++.++--..-+.... .+. .++.+..+|..++ ...|
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~-~~~-~~~~i~~~~~~~~------~~ad 75 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV-PFT-SPTKIYAGDYSDC------KDAD 75 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc-ccc-CCeEEEeCCHHHh------CCCC
Confidence 4567999999976 44444433 33334579999998776543222222111 122 2466666663332 3469
Q ss_pred EEEEcCCCCCCCcc---ccc--hHHHHHHHHHhc---CCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQ---ELF--EKPFFESVAKAL---RPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~---~l~--~~~f~~~~~~~L---kpgG~lv~~~ 241 (319)
+||+-.-.+..+.. .++ ....++.+...+ .|+|++++-+
T Consensus 76 ivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 76 LVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 99875544433211 111 234455544433 3788877654
No 405
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.24 E-value=1.9 Score=41.41 Aligned_cols=35 Identities=31% Similarity=0.302 Sum_probs=24.2
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECCh
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 160 (319)
...+||++|||. |......+...++.+++.+|-|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 346999999985 44333333344688999999885
No 406
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=86.23 E-value=4.5 Score=36.22 Aligned_cols=71 Identities=25% Similarity=0.394 Sum_probs=46.9
Q ss_pred ceeeEeeccccH--HHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH--HHHhCCCCCccE
Q 020933 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTYDA 203 (319)
Q Consensus 128 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~--~l~~~~~~~fDv 203 (319)
.+++++|+|.=+ +++.|.+.. ..|+.+|.|++.++.... +......+++|+.+ .|++..-..+|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~---------~~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLA---------DELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhh---------hhcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 368999998622 334444442 579999999998765222 11356788888854 566654578999
Q ss_pred EEEcCC
Q 020933 204 VIVDSS 209 (319)
Q Consensus 204 Ii~D~~ 209 (319)
++....
T Consensus 70 vva~t~ 75 (225)
T COG0569 70 VVAATG 75 (225)
T ss_pred EEEeeC
Confidence 997544
No 407
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.16 E-value=2.6 Score=36.18 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=22.4
Q ss_pred eeeEeeccc-cH-HHHHHHhcCCCceEEEEECCh
Q 020933 129 KVLVIGGGD-GG-VLREVSRHSSVEKIDICEIDK 160 (319)
Q Consensus 129 ~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 160 (319)
+||+||+|. |. ++..+++. +..+++.+|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 589999984 44 34444554 678899999986
No 408
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=86.16 E-value=9.3 Score=35.47 Aligned_cols=98 Identities=18% Similarity=0.281 Sum_probs=58.3
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE-cChHHHHHhCCCCCcc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~-~D~~~~l~~~~~~~fD 202 (319)
..+.+||+.|+|. |..+..+++.....+|+++.-+++-.+.++++ .. +.-+.... .+..+.+... .+.+|
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~-g~------~~v~~~~~~~~~~~~v~~~-~~~~d 232 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV-GA------DLTINSKRVEDVAKIIQEK-TGGAH 232 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc-CC------cEEecccccccHHHHHHHh-cCCCc
Confidence 4567999998542 33445556642135799999999988888653 21 10111111 2222334333 23588
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+++.+... .+.++.+.+.|+++|.++.-
T Consensus 233 ~vi~~~~~----------~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 233 AAVVTAVA----------KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred EEEEeCCC----------HHHHHHHHHhccCCCEEEEE
Confidence 66655432 25688889999999998864
No 409
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=86.12 E-value=20 Score=30.52 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=52.7
Q ss_pred CCceeeEeeccccHHHHHHH---hcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 126 NPKKVLVIGGGDGGVLREVS---RHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~---~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
.+++|.+||+|. +++.++ +.++ .+|.++|.++......... .+ ...+..+.+. ..|
T Consensus 35 ~g~tvgIiG~G~--IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~-----~aD 93 (178)
T PF02826_consen 35 RGKTVGIIGYGR--IGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLA-----QAD 93 (178)
T ss_dssp TTSEEEEESTSH--HHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHH-----H-S
T ss_pred CCCEEEEEEEcC--CcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcc-----hhh
Confidence 578999999874 444444 3344 5899999998865522221 12 2235556654 369
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|++..+... ...+++..++|+ .+|+|.+|+ |+
T Consensus 94 iv~~~~plt~-~T~~li~~~~l~----~mk~ga~lv-N~ 126 (178)
T PF02826_consen 94 IVSLHLPLTP-ETRGLINAEFLA----KMKPGAVLV-NV 126 (178)
T ss_dssp EEEE-SSSST-TTTTSBSHHHHH----TSTTTEEEE-ES
T ss_pred hhhhhhcccc-ccceeeeeeeee----ccccceEEE-ec
Confidence 9998765321 234566776665 578766655 54
No 410
>PRK07340 ornithine cyclodeaminase; Validated
Probab=86.10 E-value=8.6 Score=36.04 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=59.1
Q ss_pred cEEEEEecCCee-EEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccHHH--HHHHhcCCCceEEEEECC
Q 020933 83 NVMVFQSSTYGK-VLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVL--REVSRHSSVEKIDICEID 159 (319)
Q Consensus 83 ~i~v~~~~~~g~-~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid 159 (319)
-+.+|+. ..|. .-++||.....-+-. ........ .+..++.++|++||+|.=+-. ..++...+..+|...+.+
T Consensus 84 ~i~l~d~-~tG~p~a~~d~~~lT~~RTa-A~sala~~--~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~ 159 (304)
T PRK07340 84 EVVVADA-ATGERLFLLDGPTVTGRRTA-AVSLLAAR--TLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT 159 (304)
T ss_pred EEEEEEC-CCCcEEEEEcChhHHHHHHH-HHHHHHHH--HhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 3444544 3454 446677655432211 11111111 122346789999999864432 223333456789999999
Q ss_pred hHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCCC
Q 020933 160 KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSD 210 (319)
Q Consensus 160 ~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~~ 210 (319)
++-.+...+.+... .+.+...|..+.+ ...|+|++-.+.
T Consensus 160 ~~~a~~~a~~~~~~-------~~~~~~~~~~~av-----~~aDiVitaT~s 198 (304)
T PRK07340 160 AASAAAFCAHARAL-------GPTAEPLDGEAIP-----EAVDLVVTATTS 198 (304)
T ss_pred HHHHHHHHHHHHhc-------CCeeEECCHHHHh-----hcCCEEEEccCC
Confidence 87666544444321 1233345554443 368999975443
No 411
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.05 E-value=2 Score=38.81 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=24.6
Q ss_pred CceeeEeeccc-cHHHHHHHhcCCCceEEEEECCh
Q 020933 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (319)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 160 (319)
..+||++|||. |....+.+.+.++.+++.+|-|.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 46899999973 55544444445788999999875
No 412
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=86.04 E-value=6.6 Score=35.33 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=57.4
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.++.+||+.|+|. |..+..+++..+..+|++++.+++-.+.++++- .. + .+ .... .... ....+|+
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g-~~-----~-~~--~~~~-~~~~---~~~~~d~ 162 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG-PA-----D-PV--AADT-ADEI---GGRGADV 162 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC-CC-----c-cc--cccc-hhhh---cCCCCCE
Confidence 4567899998654 445556666655444999999988888777642 00 1 00 0000 0111 2356999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+..... ...++...+.|+++|.++...
T Consensus 163 vl~~~~~----------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 163 VIEASGS----------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEccCC----------hHHHHHHHHHhcCCcEEEEEe
Confidence 8843221 235778888999999998643
No 413
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.03 E-value=1.3 Score=39.94 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=58.1
Q ss_pred hHHHHHHHhccccCCC----CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEE
Q 020933 110 CAYQEMITHLPLCSIP----NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLH 185 (319)
Q Consensus 110 ~~Y~e~l~~l~l~~~~----~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~ 185 (319)
..|...++.+....+. +..++||||.|.-.+=-.+..+-=.-+.++.|||+..++.|+.....+. +++ ..++++
T Consensus 58 AdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~-~l~-~~I~lr 135 (292)
T COG3129 58 ADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANP-GLE-RAIRLR 135 (292)
T ss_pred hHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCc-chh-hheeEE
Confidence 3565555544333322 3458999998876653333332113688999999999999998765431 121 234444
Q ss_pred Ec-ChHHHHHhC--CCCCccEEEEcCCCCC
Q 020933 186 IG-DGVAFLKAV--PEGTYDAVIVDSSDPI 212 (319)
Q Consensus 186 ~~-D~~~~l~~~--~~~~fDvIi~D~~~~~ 212 (319)
.. |-...+... ..+.||+.+|+++.+.
T Consensus 136 ~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 136 RQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred eccCccccccccccccceeeeEecCCCcch
Confidence 32 211111111 2578999999887654
No 414
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=86.01 E-value=0.59 Score=43.61 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
....|.|+=+|-|+++.-.+-+.+...|.++|.+|..++..++.+..+. ...+..++.+|.+..- +....|-|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~---V~~r~~i~~gd~R~~~---~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANN---VMDRCRITEGDNRNPK---PRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcc---hHHHHHhhhccccccC---ccccchhee
Confidence 4478999999999999844434467899999999999999999876542 2346777777755431 356778887
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcE
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGV 236 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~ 236 (319)
+.+-... ++-.-.+.++|||.|-
T Consensus 268 LGLlPSs--------e~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 268 LGLLPSS--------EQGWPTAIKALKPEGG 290 (351)
T ss_pred ecccccc--------ccchHHHHHHhhhcCC
Confidence 6543211 1224455667887764
No 415
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=85.96 E-value=8.3 Score=36.05 Aligned_cols=100 Identities=23% Similarity=0.246 Sum_probs=56.9
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.++.+||+.|+|. |..+..+++..+..+|.+++-+++-.+.++++ .. +.-+.....+.....+....+.+|+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~vd~ 234 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GA------DVVINPREEDVVEVKSVTDGTGVDV 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-Cc------ceeeCcccccHHHHHHHcCCCCCCE
Confidence 3567888876543 33455566665544688887777777776653 21 1111111222221222223457999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+-... .....+.+.+.|+++|.++...
T Consensus 235 vld~~g----------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 235 VLEMSG----------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEECCC----------CHHHHHHHHHHhccCCEEEEEc
Confidence 984322 1245778889999999998643
No 416
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=85.95 E-value=7.4 Score=36.71 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=56.5
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChH---HHHHh-CCCCC
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV---AFLKA-VPEGT 200 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~---~~l~~-~~~~~ 200 (319)
.+.+||+.|+|. |..+..+++..+..+|++++.+++-.+.+++. .. +.-+.....+.. ..+.. .....
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~------~~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF-GA------DATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CC------CeEEcCcccccHHHHHHHHHHhCCCC
Confidence 567899987542 33445566665544899999988887777653 21 000111111111 12222 22356
Q ss_pred ccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 201 YDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 201 fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|+|+--.. ....++...+.|+++|.++.-.
T Consensus 250 ~d~vid~~g----------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEASG----------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECCC----------ChHHHHHHHHHhccCCEEEEEc
Confidence 999883221 1135677788999999998643
No 417
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=85.72 E-value=2.2 Score=42.94 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=63.4
Q ss_pred CCceeeEeeccccH--HHHHHHhcCCCceEEEEECChHHHHHHHhccccc----c-CC-CC-------CCCeEEEEcChH
Q 020933 126 NPKKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDV----A-VG-FE-------DPRVTLHIGDGV 190 (319)
Q Consensus 126 ~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~----~-~~-~~-------~~~v~v~~~D~~ 190 (319)
+.++|-+||+|+-+ ++..+++. ..+|+.+|.+++.++.+++++... . .+ +. -.+++.. .|..
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 80 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH 80 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence 34689999999644 44445555 367999999999998765443211 0 01 00 0133332 2322
Q ss_pred HHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 191 AFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 191 ~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
.. ..-|+||.-.++.... ...+|+.+.+.++|+-+|+.|+.+
T Consensus 81 ----~l--~~aDlVIEav~E~~~v-----K~~vf~~l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 81 ----AL--ADAGLVIEAIVENLEV-----KKALFAQLEELCPADTIIASNTSS 122 (503)
T ss_pred ----Hh--CCCCEEEEcCcCcHHH-----HHHHHHHHHhhCCCCeEEEECCCC
Confidence 22 2579999766543222 557788888899988888777644
No 418
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=85.68 E-value=8.7 Score=35.90 Aligned_cols=100 Identities=22% Similarity=0.208 Sum_probs=58.1
Q ss_pred CCCceeeEeecc-ccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCcc
Q 020933 125 PNPKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fD 202 (319)
.++.+||+.|+| .|..+..+++..+...|++++-++.-.+.+++.-. +.-+.....+..+-+... ..+.+|
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-------~~~v~~~~~~~~~~l~~~~~~~~~d 232 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGA-------TYVVNPFKEDVVKEVADLTDGEGVD 232 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-------cEEEcccccCHHHHHHHhcCCCCCC
Confidence 356788886553 23344556666554458888888887777765311 111112223333333322 245699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|+-... ....+..+.+.|+++|.++...
T Consensus 233 ~vld~~g----------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 233 VFLEMSG----------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEEECCC----------CHHHHHHHHHhhcCCCEEEEEc
Confidence 9884321 1245778899999999987653
No 419
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.63 E-value=10 Score=34.56 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=60.0
Q ss_pred CCCceeeEeec--cccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCcc
Q 020933 125 PNPKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fD 202 (319)
..+.+||+.|+ +.|..+.++++..+ .+|+++..+++-.+.++++ .. ..+-....+..+.+... ...+|
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~-g~-------~~~~~~~~~~~~~i~~~-~~~~d 210 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALG-ATVTATTRSPERAALLKEL-GA-------DEVVIDDGAIAEQLRAA-PGGFD 210 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhc-CC-------cEEEecCccHHHHHHHh-CCCce
Confidence 45689999985 45667777787755 5688888888877777542 21 11100122333334333 45799
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+|+-... ...++.+.+.|+++|.++..
T Consensus 211 ~vl~~~~-----------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 211 KVLELVG-----------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred EEEECCC-----------hHHHHHHHHHhccCCEEEEE
Confidence 9883221 13577788999999999864
No 420
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.52 E-value=3.2 Score=38.93 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=67.9
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECC-hHHHHHHHhccccccCCCCCCCeEEEEcChH--HHHHhCCCCCcc-
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEID-KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV--AFLKAVPEGTYD- 202 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid-~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~--~~l~~~~~~~fD- 202 (319)
-+.|++||||--.-+. +......+...|+| |++++.=++.++..... ...+.+++..|.+ +|.+......||
T Consensus 93 ~~qvViLgaGLDTRay---Rl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~-~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 93 IRQVVILGAGLDTRAY---RLDWPKGTRVFEVDLPEVIEFKKKLLAERGAT-PPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred ccEEEEecccccccee---ecCCCCCCeEEECCCcHHHHHHHHHhhhcCCC-CCceEEEEeccccccchHHHHHhcCCCc
Confidence 4689999998543322 22222367888888 99999988888875211 1237899999987 244333233444
Q ss_pred ----EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 ----AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 ----vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++|+..--...++.. ...+|+.+...+.||-.++...
T Consensus 169 ~~pt~~iaEGLl~YL~~~~--v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEA--VDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CCCeEEEeccccccCCHHH--HHHHHHHHHHhCCCCceEEEec
Confidence 444322222222221 4578999999999998888754
No 421
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=85.47 E-value=6.1 Score=32.22 Aligned_cols=73 Identities=19% Similarity=0.189 Sum_probs=42.5
Q ss_pred CCceeeEeeccccH--HHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 126 NPKKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
..++||+||+|.-+ ++..++.. +..+|+.+..+.+-.+...+.+. ...++++.-+-..-. -..+|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~-------~~~~~~~~~~~~~~~----~~~~Di 78 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFG-------GVNIEAIPLEDLEEA----LQEADI 78 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHT-------GCSEEEEEGGGHCHH----HHTESE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcC-------ccccceeeHHHHHHH----HhhCCe
Confidence 56899999986422 22333344 56789999999765443333332 235666654422211 246999
Q ss_pred EEEcCCC
Q 020933 204 VIVDSSD 210 (319)
Q Consensus 204 Ii~D~~~ 210 (319)
||.-.+.
T Consensus 79 vI~aT~~ 85 (135)
T PF01488_consen 79 VINATPS 85 (135)
T ss_dssp EEE-SST
T ss_pred EEEecCC
Confidence 9965544
No 422
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=85.23 E-value=8.8 Score=35.73 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=56.8
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh-CCCCCcc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~-~~~~~fD 202 (319)
.+..+||+.|+|. |..+..+++..+..+|++++.+++-.+.++++ .. .-+.....+....+.. .+.+.+|
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~-g~-------~~~~~~~~~~~~~l~~~~~~~~~d 237 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAAL-GA-------EPINFEDAEPVERVREATEGRGAD 237 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHh-CC-------eEEecCCcCHHHHHHHHhCCCCCC
Confidence 3567899986532 22334456665545788898888777776653 21 0011111222222322 2235699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+|+--.. ....++...+.|+++|.++.-.
T Consensus 238 vvid~~~----------~~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 238 VVLEAVG----------GAAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred EEEECCC----------CHHHHHHHHHhcccCCEEEEEC
Confidence 8883221 1246778888999999988643
No 423
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.19 E-value=8.5 Score=37.71 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=48.6
Q ss_pred CCceeeEeeccccHHHHHHHhc--CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH--HHHhCCCCCc
Q 020933 126 NPKKVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTY 201 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~--~l~~~~~~~f 201 (319)
..++|+++|+|. +++.+++. .....|+++|.|++.++..++.+ ..+.++.+|+.+ .+....-.++
T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence 467899999964 43333331 12357999999999888776643 246788899843 3444334678
Q ss_pred cEEEEcCCC
Q 020933 202 DAVIVDSSD 210 (319)
Q Consensus 202 DvIi~D~~~ 210 (319)
|+|++-..+
T Consensus 299 ~~vi~~~~~ 307 (453)
T PRK09496 299 DAFIALTND 307 (453)
T ss_pred CEEEECCCC
Confidence 998865443
No 424
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=84.89 E-value=4.5 Score=41.06 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=55.4
Q ss_pred CCceeeEeeccccHHHHHHHhc---CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHH--h-CCCC
Q 020933 126 NPKKVLVIGGGDGGVLREVSRH---SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK--A-VPEG 199 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~--~-~~~~ 199 (319)
.+++||+-|+| |.++.++.+. ...+++...|.|+.-+...++.+... +...++.++.+|.++.-+ . ..+-
T Consensus 249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~---~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK---FPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh---CCCcceEEEecccccHHHHHHHHhcC
Confidence 46788877765 6777666542 24478999999999888777766542 235689999999977532 1 1245
Q ss_pred CccEEEEcCC
Q 020933 200 TYDAVIVDSS 209 (319)
Q Consensus 200 ~fDvIi~D~~ 209 (319)
+.|+|+.-+.
T Consensus 325 kvd~VfHAAA 334 (588)
T COG1086 325 KVDIVFHAAA 334 (588)
T ss_pred CCceEEEhhh
Confidence 7899997544
No 425
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.63 E-value=12 Score=35.22 Aligned_cols=107 Identities=15% Similarity=0.272 Sum_probs=55.1
Q ss_pred eeeEeeccc-cHHHHH-HHhcCCCceEEEEECChHHHHHHHhccccccCCCCC-CCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 129 KVLVIGGGD-GGVLRE-VSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFED-PRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 129 ~VL~IG~G~-G~~~~~-l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~-~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+|-+||+|. |..... ++...-..++..+|++++..+--..-+... ..+.. .++++..+|..+. ..-|+||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y~~~------~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDYDDC------ADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCHHHh------CCCCEEE
Confidence 477899976 544433 444444468999999865432211111110 01121 3577777773222 3469999
Q ss_pred EcCCCCCCCcc-----ccc--hHHHHHHHHHhc---CCCcEEEEecC
Q 020933 206 VDSSDPIGPAQ-----ELF--EKPFFESVAKAL---RPGGVVSTQAE 242 (319)
Q Consensus 206 ~D~~~~~~~~~-----~l~--~~~f~~~~~~~L---kpgG~lv~~~~ 242 (319)
+-.-.+..+.. .++ +.+.++.+...+ .|+|++++-++
T Consensus 74 itaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 74 ITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred ECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 75544433211 111 234455554333 37888776543
No 426
>PRK07102 short chain dehydrogenase; Provisional
Probab=84.62 E-value=8.4 Score=34.01 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=44.0
Q ss_pred ceeeEeeccccHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH------HHhCCCC
Q 020933 128 KKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF------LKAVPEG 199 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~------l~~~~~~ 199 (319)
++||+.|+. |+++..++++. ...+|++++.++.-.+...+.+... ...++.++..|..+. +... ..
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~-~~ 75 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRAR----GAVAVSTHELDILDTASHAAFLDSL-PA 75 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh----cCCeEEEEecCCCChHHHHHHHHHH-hh
Confidence 478888854 55666654431 1357999999886544333222211 234788888886543 2222 24
Q ss_pred CccEEEEcC
Q 020933 200 TYDAVIVDS 208 (319)
Q Consensus 200 ~fDvIi~D~ 208 (319)
.+|+++...
T Consensus 76 ~~d~vv~~a 84 (243)
T PRK07102 76 LPDIVLIAV 84 (243)
T ss_pred cCCEEEECC
Confidence 579999754
No 427
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=84.61 E-value=4.2 Score=41.01 Aligned_cols=104 Identities=13% Similarity=0.214 Sum_probs=64.4
Q ss_pred CCceeeEeeccccH--HHHHHHhcCCCceEEEEECChHHHHHHHhcccccc-----CC-CC-------CCCeEEEEcChH
Q 020933 126 NPKKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FE-------DPRVTLHIGDGV 190 (319)
Q Consensus 126 ~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-----~~-~~-------~~~v~v~~~D~~ 190 (319)
.-++|-+||+|.-+ ++..+++.. ..|+..|.+++.++.+++++.... .+ +. -.+++.. .|..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~aG--~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 34689999999644 555556553 679999999999988755443210 01 00 0134433 2322
Q ss_pred HHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 191 AFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 191 ~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+ . ..-|+||--.++.... ...+|+.+.+.++|+.+++.|+.+
T Consensus 83 ~----~--~~aDlViEav~E~~~v-----K~~vf~~l~~~~~~~ailasntSt 124 (507)
T PRK08268 83 D----L--ADCDLVVEAIVERLDV-----KQALFAQLEAIVSPDCILATNTSS 124 (507)
T ss_pred H----h--CCCCEEEEcCcccHHH-----HHHHHHHHHhhCCCCcEEEECCCC
Confidence 1 2 2579999665553322 456788888888998888877644
No 428
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.53 E-value=8.5 Score=36.43 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=63.3
Q ss_pred CCCceeeEeeccccHHH-HHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGDGGVL-REVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~G~~~-~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.++..|.+.|.|.=+++ .+-++..+..+|++||++++-.+.|+++=..- +-+|+ .+. .-..+.+.+..++.+|.
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe---~iNp~-d~~-~~i~evi~EmTdgGvDy 265 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE---FINPK-DLK-KPIQEVIIEMTDGGVDY 265 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce---ecChh-hcc-ccHHHHHHHHhcCCceE
Confidence 35678888998764444 44466667899999999999999999873221 12233 111 13555665544667777
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCC-cEEEEe
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPG-GVVSTQ 240 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~Lkpg-G~lv~~ 240 (319)
-+= . .+ ..+.++++....+.| |.-++-
T Consensus 266 sfE-c---~G------~~~~m~~al~s~h~GwG~sv~i 293 (375)
T KOG0022|consen 266 SFE-C---IG------NVSTMRAALESCHKGWGKSVVI 293 (375)
T ss_pred EEE-e---cC------CHHHHHHHHHHhhcCCCeEEEE
Confidence 551 1 11 235677777778888 765543
No 429
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=84.30 E-value=8.9 Score=35.78 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=58.3
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
....+||+.|+|. |..+.++++..+ .+|++++.+++-.+.++++ .. +.-+.....|..+.+... ..+|+
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~-g~------~~~i~~~~~~~~~~~~~~--~~~d~ 231 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMG-FRTVAISRGSDKADLARKL-GA------HHYIDTSKEDVAEALQEL--GGAKL 231 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHc-CC------cEEecCCCccHHHHHHhc--CCCCE
Confidence 3467899998543 334455666654 4799999998888888653 21 111112222333334333 35899
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+. ... ....++.+.+.|+++|.++.-.
T Consensus 232 vi~-~~g---------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 232 ILA-TAP---------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEE-CCC---------chHHHHHHHHHcccCCEEEEEe
Confidence 883 211 1245777888999999998643
No 430
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=84.16 E-value=9.4 Score=31.32 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=44.8
Q ss_pred ceeeEeeccccHHHHHHHhc---CCCceEEEEECC--hHHHHHHHhccccccCCCCCCCeEEEEcChHH------HHHhC
Q 020933 128 KKVLVIGGGDGGVLREVSRH---SSVEKIDICEID--KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA------FLKAV 196 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid--~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~------~l~~~ 196 (319)
|.||+.|+++ +++++++++ .+..+|..+..+ .+..+...+.++.. ..++.++..|..+ .++..
T Consensus 1 k~~lItGa~~-giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGASS-GIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP-----GAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTTS-HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT-----TSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCCC-HHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc-----cccccccccccccccccccccccc
Confidence 4678888774 466555542 145688888888 33333333333321 3578888888532 22211
Q ss_pred --CCCCccEEEEcCCC
Q 020933 197 --PEGTYDAVIVDSSD 210 (319)
Q Consensus 197 --~~~~fDvIi~D~~~ 210 (319)
..+..|++|.....
T Consensus 75 ~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 75 IKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHSSESEEEEECSC
T ss_pred cccccccccccccccc
Confidence 13689999986544
No 431
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.08 E-value=27 Score=34.27 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=51.2
Q ss_pred CCceeeEeeccccH-HHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..++|+++|+|.=+ .....++..+ .+|+++|.|+.-...++.. + .++. +..+.+ ...|+|
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A~~~------G-----~~v~--~leeal-----~~aDVV 254 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEAAMD------G-----FRVM--TMEEAA-----KIGDIF 254 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHHHhc------C-----CEeC--CHHHHH-----hcCCEE
Confidence 57899999998744 3333455544 5799999999654443321 1 1111 222322 346998
Q ss_pred EEcCCCCCCCccccchHHHHH-HHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFE-SVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~-~~~~~LkpgG~lv~~~ 241 (319)
|.-. . +...+. .....+|+|++++...
T Consensus 255 ItaT-G---------~~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 255 ITAT-G---------NKDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred EECC-C---------CHHHHHHHHHhcCCCCcEEEEEC
Confidence 7522 1 223444 3667899999887544
No 432
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=84.06 E-value=3.3 Score=36.26 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=22.8
Q ss_pred CceeeEeeccccHHHHHHHh---cCCCceEEEEECCh
Q 020933 127 PKKVLVIGGGDGGVLREVSR---HSSVEKIDICEIDK 160 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~ 160 (319)
..+||++|+|. ++.++++ ..++.+++.+|-|.
T Consensus 21 ~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCc
Confidence 46999999875 4444333 34788999999884
No 433
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=84.03 E-value=3 Score=39.00 Aligned_cols=76 Identities=25% Similarity=0.282 Sum_probs=42.7
Q ss_pred eeEeeccccHHHHHHHhc---CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEE----EEcChHHHH--Hh-CCCC
Q 020933 130 VLVIGGGDGGVLREVSRH---SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTL----HIGDGVAFL--KA-VPEG 199 (319)
Q Consensus 130 VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v----~~~D~~~~l--~~-~~~~ 199 (319)
||+-|+ +|.++.++.++ ....+++.+|.|+.-+-..++.+... +.++++++ +.+|.++.- .. ....
T Consensus 1 VLVTGa-~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~---~~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTGA-GGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSR---FPDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEETT-TSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHH---C--TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEcc-ccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhc---ccccCcccccCceeecccCHHHHHHHHhhc
Confidence 455554 57877776653 23378999999998888777766321 12345554 488987642 22 2345
Q ss_pred CccEEEEcCC
Q 020933 200 TYDAVIVDSS 209 (319)
Q Consensus 200 ~fDvIi~D~~ 209 (319)
+.|+|+.-+.
T Consensus 77 ~pdiVfHaAA 86 (293)
T PF02719_consen 77 KPDIVFHAAA 86 (293)
T ss_dssp T-SEEEE---
T ss_pred CCCEEEEChh
Confidence 8999997544
No 434
>PLN02702 L-idonate 5-dehydrogenase
Probab=83.97 E-value=7.4 Score=36.84 Aligned_cols=100 Identities=25% Similarity=0.258 Sum_probs=60.0
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEE--EEcChHHHHHh---CCC
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTL--HIGDGVAFLKA---VPE 198 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v--~~~D~~~~l~~---~~~ 198 (319)
....+||++|+|. |..+..+++..+...|++++.++...+.++++-.. ..+.+ ...+..+.+.. ...
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 252 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGAD-------EIVLVSTNIEDVESEVEEIQKAMG 252 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC-------EEEecCcccccHHHHHHHHhhhcC
Confidence 3567999997542 44455667766666789999998888888764211 11111 11233232221 113
Q ss_pred CCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 199 GTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 199 ~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+.+|+|+--.. ....+..+.+.|+++|.++...
T Consensus 253 ~~~d~vid~~g----------~~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 253 GGIDVSFDCVG----------FNKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCCEEEECCC----------CHHHHHHHHHHHhcCCEEEEEc
Confidence 46999883221 1245788889999999988643
No 435
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=83.87 E-value=2.4 Score=39.59 Aligned_cols=44 Identities=18% Similarity=0.418 Sum_probs=36.0
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccc
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFP 171 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~ 171 (319)
.+.+|..||.|...++..+++.+ .+|++||+++.-|.+-+-.+.
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHH
Confidence 56799999999887888888775 689999999999887665543
No 436
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=83.78 E-value=9.5 Score=35.63 Aligned_cols=99 Identities=15% Similarity=0.289 Sum_probs=58.6
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCccE
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fDv 203 (319)
++++||+.|+|. |..+.++++..+..+|++++.+++-.+.+++. .. +.-+.....+..+.+... ..+.+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l-g~------~~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM-GA------TRAVNVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CC------cEEecCccccHHHHHHHhcCCCCCCE
Confidence 567888876543 44555667766555788888888877776653 11 101111112332333322 2356898
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+--.. ....++.+.+.|+++|.++...
T Consensus 236 v~d~~g----------~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 236 GLEMSG----------APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEECCC----------CHHHHHHHHHHHhcCCEEEEEe
Confidence 873221 1246788889999999998764
No 437
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=83.77 E-value=3.3 Score=36.77 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=23.9
Q ss_pred CCceeeEeeccc-cHH-HHHHHhcCCCceEEEEECC
Q 020933 126 NPKKVLVIGGGD-GGV-LREVSRHSSVEKIDICEID 159 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~-~~~l~~~~~~~~v~~VEid 159 (319)
...+|++||+|. |.. +..|++. +..+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 356999999984 443 3444444 67899999999
No 438
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=83.62 E-value=9.2 Score=36.24 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=57.0
Q ss_pred CCceeeEeecc-ccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHH-hCCCCCccE
Q 020933 126 NPKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLK-AVPEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~-~~~~~~fDv 203 (319)
+..+||+.|+| .|..+..+++..+...+++++.+++..+.+++. .. +.-+.....+..+-+. ......+|+
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~-g~------~~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL-GA------THTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC------ceEecCCcccHHHHHHHHhCCCCCCE
Confidence 45689888654 234445566665555589999988888877543 21 1011111122222222 222456999
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+.-... ....+.+.++|+++|.++.-.
T Consensus 260 vld~vg~----------~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 260 VVEALGK----------PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEeCCC----------HHHHHHHHHHHhcCCEEEEEc
Confidence 9832221 125677888999999988653
No 439
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=83.28 E-value=2.9 Score=37.40 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=22.7
Q ss_pred CceeeEeeccc-cHHHHHHHhcCCCceEEEEECCh
Q 020933 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDK 160 (319)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 160 (319)
..+||++|||. |......+.+.++.+++.+|-|.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 46999999984 43333333334678999997664
No 440
>PRK08618 ornithine cyclodeaminase; Validated
Probab=83.16 E-value=17 Score=34.34 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=60.2
Q ss_pred ccEEEEEecCCee-EEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccH--HHHHHHhcCCCceEEEEEC
Q 020933 82 QNVMVFQSSTYGK-VLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGG--VLREVSRHSSVEKIDICEI 158 (319)
Q Consensus 82 q~i~v~~~~~~g~-~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEi 158 (319)
+.|.+|+.. .|+ +.++||.....-+- -.-....+. .+..+..++|++||+|.=+ .+..++...+..+|..++.
T Consensus 85 g~i~l~d~~-tG~p~a~~d~~~lT~~RT-aa~sala~~--~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r 160 (325)
T PRK08618 85 GTVILSDFE-TGEVLAILDGTYLTQIRT-GALSGVATK--YLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160 (325)
T ss_pred EEEEEEeCC-CCceEEEEccchhhhhhH-HHHHHHHHH--HhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence 445566554 454 44677765543332 111111111 1234567899999998543 2233444446789999999
Q ss_pred ChHHHHHHHhccccccCCCCCCCeEE-EEcChHHHHHhCCCCCccEEEEcCC
Q 020933 159 DKMVVDVSKQFFPDVAVGFEDPRVTL-HIGDGVAFLKAVPEGTYDAVIVDSS 209 (319)
Q Consensus 159 d~~vi~~ak~~~~~~~~~~~~~~v~v-~~~D~~~~l~~~~~~~fDvIi~D~~ 209 (319)
+++-.+...+.+... ..+++ ...|..+.+ ...|+|++-.+
T Consensus 161 ~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~aDiVi~aT~ 201 (325)
T PRK08618 161 TFEKAYAFAQEIQSK------FNTEIYVVNSADEAI-----EEADIIVTVTN 201 (325)
T ss_pred CHHHHHHHHHHHHHh------cCCcEEEeCCHHHHH-----hcCCEEEEccC
Confidence 987665444433211 11222 245544444 34799986544
No 441
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=83.14 E-value=16 Score=33.37 Aligned_cols=112 Identities=12% Similarity=0.139 Sum_probs=66.4
Q ss_pred CceeeEeeccccHHHHHHHhcCCCceEEEEECC-hHHHHHHHhccccccCCCCCCCeEEEEcChHH-HHHhCCCCCcc--
Q 020933 127 PKKVLVIGGGDGGVLREVSRHSSVEKIDICEID-KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA-FLKAVPEGTYD-- 202 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid-~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~-~l~~~~~~~fD-- 202 (319)
...|+.||||--.-...+. . + ..+..+|+| |++++.-++.++... .....+.+++..|... +........||
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~-~-~-~~~~~~EvD~P~v~~~K~~~l~~~~-~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLP-W-P-DGTRVFEVDQPAVLAFKEKVLAELG-AEPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred CcEEEEeCCccccHHHhcC-C-C-CCCeEEECCChHHHHHHHHHHHHcC-CCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 4579999999766655542 2 2 247788998 778887777776531 1124678899899752 22221122233
Q ss_pred ---EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCCc
Q 020933 203 ---AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESI 244 (319)
Q Consensus 203 ---vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~ 244 (319)
++++..-...-+... ...+++.+.+...||+.+++...++
T Consensus 158 ~ptl~i~EGvl~YL~~~~--v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEA--VDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CCeeeeecchhhcCCHHH--HHHHHHHHHHhCCCCcEEEEEeccc
Confidence 333222111111111 3457888888888999999875443
No 442
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.14 E-value=14 Score=34.40 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=52.8
Q ss_pred ceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE-cChHHHHHhCCCCCccEEE
Q 020933 128 KKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 128 ~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~-~D~~~~l~~~~~~~fDvIi 205 (319)
.+|-+||+|. |......+...+..+|..+|++++..+-...-+.... .......++.. .|..+ + ..-|+||
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~-~~~~~~~~i~~~~d~~~-~-----~~aDiVi 75 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA-PVEGFDTKITGTNDYED-I-----AGSDVVV 75 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh-hhcCCCcEEEeCCCHHH-H-----CCCCEEE
Confidence 4899999987 5554444333221289999999876532111111110 01111234443 45322 2 3459998
Q ss_pred EcCCCCCCCccc---------cchHHHHHHHHHhcCCCcEEEEec
Q 020933 206 VDSSDPIGPAQE---------LFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~~---------l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+-...|..+... -...++++.+.+.. |++++++.+
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~t 119 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVT 119 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 755433322111 11234555555554 678776554
No 443
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.94 E-value=13 Score=34.74 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=58.8
Q ss_pred CCCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh-CCCCCc
Q 020933 124 IPNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTY 201 (319)
Q Consensus 124 ~~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~-~~~~~f 201 (319)
...+.+||+.|+|. |..+..+++..+...+++++.++.-.+.++++-. +.-+.....+..+.+.. .+...+
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga-------~~v~~~~~~~~~~~i~~~~~~~~~ 238 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGA-------TDIVAERGEEAVARVRELTGGVGA 238 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-------ceEecCCcccHHHHHHHhcCCCCC
Confidence 34567888876543 3344556666665568999988877777776421 11111111122222322 223569
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+|+. ... ....++.+.+.|+++|.++...
T Consensus 239 d~il~-~~g---------~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 239 DAVLE-CVG---------TQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CEEEE-CCC---------CHHHHHHHHHhhccCCEEEEec
Confidence 99883 221 1246788899999999998654
No 444
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=82.92 E-value=33 Score=33.37 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=56.4
Q ss_pred eeeEeeccccHHHHH-HHhcCCCceEEEEECChHHHHHHHhccccccC-CCC----CCCeEEEE-cChHHHHHhCCCCCc
Q 020933 129 KVLVIGGGDGGVLRE-VSRHSSVEKIDICEIDKMVVDVSKQFFPDVAV-GFE----DPRVTLHI-GDGVAFLKAVPEGTY 201 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~-l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~-~~~----~~~v~v~~-~D~~~~l~~~~~~~f 201 (319)
+|-+||.|.=+.... ++.. + .+|+++|+|++.++..++....... +++ ..+.++.. .|..+. -..-
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G-~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~-----~~~a 74 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-N-HEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA-----YRDA 74 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-C-CcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh-----hcCC
Confidence 578899885443333 2233 2 5799999999999988775432210 100 01222221 111111 1346
Q ss_pred cEEEEcCCCCCCCccccc----hHHHHHHHHHhcCCCcEEEEecC
Q 020933 202 DAVIVDSSDPIGPAQELF----EKPFFESVAKALRPGGVVSTQAE 242 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~----~~~f~~~~~~~LkpgG~lv~~~~ 242 (319)
|+||...+.+.......+ -.+.++.+.+ +++|.+++..+.
T Consensus 75 d~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~ST 118 (388)
T PRK15057 75 DYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKST 118 (388)
T ss_pred CEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeee
Confidence 999987776642221112 2344566666 677777666543
No 445
>PRK06949 short chain dehydrogenase; Provisional
Probab=82.86 E-value=21 Score=31.52 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=46.1
Q ss_pred CCceeeEeeccccHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH------HHhC-
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF------LKAV- 196 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~------l~~~- 196 (319)
..++||+.|+ +|+++..+++.. ...+|+++..+++-++.....+... ..+++++..|..+. +...
T Consensus 8 ~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 8 EGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-----GGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3578888885 455666555421 2357999999988766555444321 23577787776421 1111
Q ss_pred -CCCCccEEEEcCC
Q 020933 197 -PEGTYDAVIVDSS 209 (319)
Q Consensus 197 -~~~~fDvIi~D~~ 209 (319)
..+..|+||....
T Consensus 82 ~~~~~~d~li~~ag 95 (258)
T PRK06949 82 TEAGTIDILVNNSG 95 (258)
T ss_pred HhcCCCCEEEECCC
Confidence 1246899997554
No 446
>PTZ00117 malate dehydrogenase; Provisional
Probab=82.83 E-value=14 Score=34.94 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=55.4
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhc-cccccCCCCCCCeEEEE-cChHHHHHhCCCCCcc
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQF-FPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYD 202 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~-~~~~~~~~~~~~v~v~~-~D~~~~l~~~~~~~fD 202 (319)
+..+|.+||+|. |.....++...+..++..+|++++..+ +... +... ........++.. .|.. -+ ..-|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~-~~~~~~~~~i~~~~d~~-~l-----~~AD 75 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF-STLVGSNINILGTNNYE-DI-----KDSD 75 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh-ccccCCCeEEEeCCCHH-Hh-----CCCC
Confidence 345899999988 665555444434357999999986543 2111 1110 011222345554 4533 22 2359
Q ss_pred EEEEcCCCCCCCcc---c------cchHHHHHHHHHhcCCCcEEEEec
Q 020933 203 AVIVDSSDPIGPAQ---E------LFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 203 vIi~D~~~~~~~~~---~------l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+||.-.-.+..+.. . -.-.++.+.+.+. .|++++++-+
T Consensus 76 iVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvs 122 (319)
T PTZ00117 76 VVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVT 122 (319)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 89875532222210 0 0123455555555 5888666543
No 447
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=82.71 E-value=8.1 Score=33.98 Aligned_cols=113 Identities=20% Similarity=0.287 Sum_probs=70.8
Q ss_pred chhHHHHHHHhccccCCCCCceeeEeeccccHHHHHHHhc----CCCceEEEEECChHHHHHHHhccccccCCCCCCCeE
Q 020933 108 DECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRH----SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVT 183 (319)
Q Consensus 108 de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~ 183 (319)
|-..||+.+-. -+|.-|+++|.--|+.+...+.. ....+|.++|||-.-++-+.. +-|++.
T Consensus 57 D~~~yQellw~------~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~---------e~p~i~ 121 (237)
T COG3510 57 DMWNYQELLWE------LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR---------EVPDIL 121 (237)
T ss_pred HHHHHHHHHHh------cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh---------cCCCeE
Confidence 44678887754 37889999999999988877652 223579999998554332221 137899
Q ss_pred EEEcChHHH-----HHhCCCCCccEE--EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 184 LHIGDGVAF-----LKAVPEGTYDAV--IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 184 v~~~D~~~~-----l~~~~~~~fDvI--i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++.++..+. ++.. ++.|--| |.|+..... + ...-++.....|.-|-++++.-
T Consensus 122 f~egss~dpai~eqi~~~-~~~y~kIfvilDsdHs~~---h--vLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 122 FIEGSSTDPAIAEQIRRL-KNEYPKIFVILDSDHSME---H--VLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEeCCCCCHHHHHHHHHH-hcCCCcEEEEecCCchHH---H--HHHHHHHhhhHhhcCceEEEec
Confidence 999987643 2222 2333333 345443211 1 2334667778888888888753
No 448
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.62 E-value=3.6 Score=39.26 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=23.9
Q ss_pred CCceeeEeeccc-cH-HHHHHHhcCCCceEEEEECCh
Q 020933 126 NPKKVLVIGGGD-GG-VLREVSRHSSVEKIDICEIDK 160 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 160 (319)
...+||++|||. |. ++..|++. ++.+++.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 346899999984 33 33344444 678999999983
No 449
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=82.58 E-value=12 Score=34.78 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=56.9
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChH-H---HHHhCCCC
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV-A---FLKAVPEG 199 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~-~---~l~~~~~~ 199 (319)
....+||+.|+|. |..+..+++..+...+++++.+++-.+.++++-.. .-+.....+.. . .......+
T Consensus 160 ~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~-------~~i~~~~~~~~~~~~~~~~~~~~~ 232 (341)
T cd08262 160 TPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGAD-------IVVDPAADSPFAAWAAELARAGGP 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCc-------EEEcCCCcCHHHHHHHHHHHhCCC
Confidence 4567999997532 22344456665555688899889888888764210 00111111111 1 11112245
Q ss_pred CccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 200 ~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
.+|+|+ |... ....+..+.+.|+++|.++.-.
T Consensus 233 ~~d~vi-d~~g---------~~~~~~~~~~~l~~~g~~v~~g 264 (341)
T cd08262 233 KPAVIF-ECVG---------APGLIQQIIEGAPPGGRIVVVG 264 (341)
T ss_pred CCCEEE-ECCC---------CHHHHHHHHHHhccCCEEEEEC
Confidence 699888 4322 1135677888999999988643
No 450
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=82.38 E-value=15 Score=32.64 Aligned_cols=77 Identities=12% Similarity=0.152 Sum_probs=46.3
Q ss_pred CceeeEeeccccHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH--H----HhC--
Q 020933 127 PKKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF--L----KAV-- 196 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~--l----~~~-- 196 (319)
.++||+.|+ +|+++..++++. ...+|++++.++.-++...+.+... ..++.++.+|..+. + ...
T Consensus 12 ~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 12 GKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL-----GIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 468888884 566666665531 1257999999887666555443321 24677788876531 1 110
Q ss_pred CCCCccEEEEcCC
Q 020933 197 PEGTYDAVIVDSS 209 (319)
Q Consensus 197 ~~~~fDvIi~D~~ 209 (319)
..+..|+||....
T Consensus 86 ~~~~id~vi~~ag 98 (259)
T PRK08213 86 RFGHVDILVNNAG 98 (259)
T ss_pred HhCCCCEEEECCC
Confidence 1246899998654
No 451
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=82.38 E-value=13 Score=28.68 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=50.3
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+.++||+||+|.-+..+.-.-.....+|+.+..+. +.++ .++++...+.... -..+|+|+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~------------~~i~~~~~~~~~~-----l~~~~lV~ 65 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE------------GLIQLIRREFEED-----LDGADLVF 65 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH------------TSCEEEESS-GGG-----CTTESEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh------------hHHHHHhhhHHHH-----HhhheEEE
Confidence 57899999998766544422222347899988876 2222 2455554443222 24589998
Q ss_pred EcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 206 VDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 206 ~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
....+ .+.-+.+++..+.-|+++-.+..
T Consensus 66 ~at~d----------~~~n~~i~~~a~~~~i~vn~~D~ 93 (103)
T PF13241_consen 66 AATDD----------PELNEAIYADARARGILVNVVDD 93 (103)
T ss_dssp E-SS-----------HHHHHHHHHHHHHTTSEEEETT-
T ss_pred ecCCC----------HHHHHHHHHHHhhCCEEEEECCC
Confidence 65443 24455666666667888765543
No 452
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=82.36 E-value=18 Score=33.44 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=57.3
Q ss_pred CCCceeeEeecc-ccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
....+||++|+| .|..+..+++..+ .+|+++..+++..+.+++. .. + .++..+........ .+.+|+
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~-g~------~---~~~~~~~~~~~~~~-~~~~d~ 228 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARKL-GA------D---EVVDSGAELDEQAA-AGGADV 228 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHh-CC------c---EEeccCCcchHHhc-cCCCCE
Confidence 456789999876 4555556666654 4789999999888877553 21 0 11111111111112 346998
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
++.-.. .....+.+.+.|+++|.++.-.
T Consensus 229 vi~~~~----------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVV----------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCC----------cHHHHHHHHHhcccCCEEEEEC
Confidence 883222 1245778889999999888643
No 453
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=82.33 E-value=14 Score=34.95 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=58.4
Q ss_pred CCCceeeEeecc-ccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCcc
Q 020933 125 PNPKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~fD 202 (319)
.+..+||+.|+| .|..+..+++..+..+|++++.++.-.+.+++. .. +.-+.....+....+... +...+|
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~-g~------~~vv~~~~~~~~~~l~~~~~~~~vd 253 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRF-GA------THTVNASEDDAVEAVRDLTDGRGAD 253 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHh-CC------eEEeCCCCccHHHHHHHHcCCCCCC
Confidence 356799999764 244556667766555589999888888877542 21 101111111322223222 245699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+|+--... ...++.+.+.|+++|.++.-
T Consensus 254 ~vld~~~~----------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 254 YAFEAVGR----------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred EEEEcCCC----------hHHHHHHHHHhhcCCeEEEE
Confidence 88732221 24577888999999998764
No 454
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.33 E-value=7.2 Score=31.82 Aligned_cols=31 Identities=35% Similarity=0.664 Sum_probs=20.7
Q ss_pred eeeEeeccc-cH-HHHHHHhcCCCceEEEEECCh
Q 020933 129 KVLVIGGGD-GG-VLREVSRHSSVEKIDICEIDK 160 (319)
Q Consensus 129 ~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 160 (319)
+||++|||. |. ++..|++ .+..+++.+|-|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR-SGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCC
Confidence 589999973 33 2333443 4678999999883
No 455
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=82.12 E-value=36 Score=33.34 Aligned_cols=106 Identities=19% Similarity=0.139 Sum_probs=63.0
Q ss_pred ceeeEeeccccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC----------C
Q 020933 128 KKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV----------P 197 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~----------~ 197 (319)
.+|-++|.|-=++...++-.....+|+++|||+..++...+- +..+..-|..+.++.. .
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G-----------~~~i~e~~~~~~v~~~v~~g~lraTtd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG-----------ESYIEEPDLDEVVKEAVESGKLRATTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC-----------cceeecCcHHHHHHHHHhcCCceEecC
Confidence 588899998766655543322236899999999999866542 1122222222111110 0
Q ss_pred ---CCCccEEEEcCCCCCCC---ccccchHHHHHHHHHhcCCCcEEEEecCCc
Q 020933 198 ---EGTYDAVIVDSSDPIGP---AQELFEKPFFESVAKALRPGGVVSTQAESI 244 (319)
Q Consensus 198 ---~~~fDvIi~D~~~~~~~---~~~l~~~~f~~~~~~~LkpgG~lv~~~~~~ 244 (319)
-..-|++|+-.+.|... +.--+-....+.++..|++|-.+++.+..+
T Consensus 79 ~~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~ 131 (436)
T COG0677 79 PEELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTP 131 (436)
T ss_pred hhhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 12578888766555432 111223456778899999999999877544
No 456
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=82.07 E-value=7 Score=36.08 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=51.6
Q ss_pred eeeEeeccccHHH--HHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEE
Q 020933 129 KVLVIGGGDGGVL--REVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (319)
Q Consensus 129 ~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~ 206 (319)
+|++||+|..+.. ..+++.. .+|+.++. ++.++..++.--... . ......+ ......-.... ...+|+||+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g--~~V~~~~r-~~~~~~~~~~g~~~~-~-~~~~~~~-~~~~~~~~~~~-~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG--RDVTFLVR-PKRAKALRERGLVIR-S-DHGDAVV-PGPVITDPEEL-TGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC--CceEEEec-HHHHHHHHhCCeEEE-e-CCCeEEe-cceeecCHHHc-cCCCCEEEE
Confidence 6899999875543 3344442 56999998 666665554211110 0 0001111 00000001111 257899987
Q ss_pred cCCCCCCCccccchHHHHHHHHHhcCCCcEEEE
Q 020933 207 DSSDPIGPAQELFEKPFFESVAKALRPGGVVST 239 (319)
Q Consensus 207 D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~ 239 (319)
-..... ..+.++.+...++++.+++.
T Consensus 75 avk~~~-------~~~~~~~l~~~~~~~~~ii~ 100 (305)
T PRK12921 75 AVKAYQ-------LDAAIPDLKPLVGEDTVIIP 100 (305)
T ss_pred EecccC-------HHHHHHHHHhhcCCCCEEEE
Confidence 554321 45678888888888876654
No 457
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.05 E-value=17 Score=33.96 Aligned_cols=107 Identities=18% Similarity=0.334 Sum_probs=53.7
Q ss_pred ceeeEeeccc-cHHHHH-HHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 128 KKVLVIGGGD-GGVLRE-VSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 128 ~~VL~IG~G~-G~~~~~-l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
++|.+||+|. |..... ++......+|+.+|++++..+-...-+.... .+......+..+|..+ + ...|+||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l-----~~aDIVI 73 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C-----KDADIVV 73 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h-----CCCCEEE
Confidence 3789999875 332222 3333323489999999876553333221110 0112234555555322 1 4579999
Q ss_pred EcCCCCCCCcc---ccc--hHHHHHHHHHh---cCCCcEEEEec
Q 020933 206 VDSSDPIGPAQ---ELF--EKPFFESVAKA---LRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~---~l~--~~~f~~~~~~~---LkpgG~lv~~~ 241 (319)
+-...+..+.. .++ +.+.++.+.+. -.|+|++++-+
T Consensus 74 itag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 74 ITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 85544433211 111 12334444332 46788776654
No 458
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=82.05 E-value=12 Score=34.24 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=70.5
Q ss_pred CCceeeEeeccccHHHHHHHhc----CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCc
Q 020933 126 NPKKVLVIGGGDGGVLREVSRH----SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTY 201 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~f 201 (319)
.+-..+++|.|+..-++.++.. ....+.+-+|+|..+++..-+-+.. .+..-.+.-+++|...-+...+...-
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~---~y~~l~v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR---EYPGLEVNALCGDYELALAELPRGGR 154 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH---hCCCCeEeehhhhHHHHHhcccCCCe
Confidence 4678999999999877776552 3446899999999998854433221 11223456677887777765543222
Q ss_pred cEE-EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 202 DAV-IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 202 DvI-i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
-++ +..++-..-.+.. -..|+..+...|+||-.+.+-+
T Consensus 155 Rl~~flGStlGN~tp~e--~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 155 RLFVFLGSTLGNLTPGE--CAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEEecccccCCChHH--HHHHHHHHHhcCCCcceEEEec
Confidence 222 2233322211211 3569999999999999988754
No 459
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=82.04 E-value=18 Score=32.09 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=46.2
Q ss_pred CCceeeEeeccccHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH------HHhC-
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF------LKAV- 196 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~------l~~~- 196 (319)
..++||+.|+ +|+++..++++. ...+|++++.++.-++...+.+... ..++.++..|..+. +...
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ-----GLSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-----CceEEEEEccCCCHHHHHHHHHHHH
Confidence 3578998886 566666665531 2357999999877655444433321 23577777776432 1111
Q ss_pred -CCCCccEEEEcCC
Q 020933 197 -PEGTYDAVIVDSS 209 (319)
Q Consensus 197 -~~~~fDvIi~D~~ 209 (319)
.-+..|+||....
T Consensus 83 ~~~~~~d~li~~ag 96 (255)
T PRK07523 83 AEIGPIDILVNNAG 96 (255)
T ss_pred HhcCCCCEEEECCC
Confidence 1256899998654
No 460
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=82.03 E-value=12 Score=34.74 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=55.8
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh-CCCCCcc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTYD 202 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~-~~~~~fD 202 (319)
..+.+||+.|+|. |..+..+++..+..+|++++-+++-.+.++++-. +.-+... .+..+-+.. .+...+|
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~-------~~~~~~~-~~~~~~i~~~~~~~~~d 237 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGA-------DHVLNAS-DDVVEEVRELTGGRGAD 237 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCC-------cEEEcCC-ccHHHHHHHHhCCCCCC
Confidence 3467999998553 2233345555443578889888888777765311 1000111 111112222 2234699
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+|+-... ....++.+.+.|+++|.++.-
T Consensus 238 vvld~~g----------~~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 238 AVIDFVG----------SDETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred EEEEcCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 9883222 124578888999999998864
No 461
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=81.91 E-value=24 Score=33.41 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=39.7
Q ss_pred CceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHH-----HHHHhccccccCCCCCCCeEEEE-cChHHHHHhCCCC
Q 020933 127 PKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVV-----DVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEG 199 (319)
Q Consensus 127 ~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi-----~~ak~~~~~~~~~~~~~~v~v~~-~D~~~~l~~~~~~ 199 (319)
..+|.+||+|. |.....++...+...++.+|++++.. +..... .+.....++.. +|.. - . .
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~------~~~~~~~~I~~~~d~~-~---l--~ 73 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSN------VIAGSNSKVIGTNNYE-D---I--A 73 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhh------hccCCCeEEEECCCHH-H---h--C
Confidence 36899999988 33333333333434699999999853 222211 11223456664 6632 2 2 3
Q ss_pred CccEEEEcC
Q 020933 200 TYDAVIVDS 208 (319)
Q Consensus 200 ~fDvIi~D~ 208 (319)
.-|+||.-.
T Consensus 74 ~aDiVI~ta 82 (321)
T PTZ00082 74 GSDVVIVTA 82 (321)
T ss_pred CCCEEEECC
Confidence 459999744
No 462
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=81.87 E-value=16 Score=35.06 Aligned_cols=94 Identities=16% Similarity=0.194 Sum_probs=52.9
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHH-HHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMV-VDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~v-i~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
...+||+.|+|. |..+.++++..+ .+|++++.+++- .+.+++. .. + ..+...+... +... ...+|+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~G-a~Vi~~~~~~~~~~~~a~~l-Ga------~--~~i~~~~~~~-v~~~-~~~~D~ 245 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFG-LRVTVISRSSEKEREAIDRL-GA------D--SFLVTTDSQK-MKEA-VGTMDF 245 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcC-CeEEEEeCChHHhHHHHHhC-CC------c--EEEcCcCHHH-HHHh-hCCCcE
Confidence 457888888753 445566677655 468888877543 5555442 11 1 0111112122 2222 135898
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
|+- ... ....++.+.+.|+++|.++.-.
T Consensus 246 vid-~~G---------~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 246 IID-TVS---------AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred EEE-CCC---------cHHHHHHHHHhhcCCCEEEEEc
Confidence 883 221 1235777888999999998653
No 463
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=81.75 E-value=2.3 Score=44.83 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=64.3
Q ss_pred CceeeEeeccccHHH--HHHHhcCCCceEEEEECChHHHHHHHhcccccc-----CC-CC-------CCCeEEEEcChHH
Q 020933 127 PKKVLVIGGGDGGVL--REVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FE-------DPRVTLHIGDGVA 191 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-----~~-~~-------~~~v~v~~~D~~~ 191 (319)
-++|-+||+|+-+.. ..++.. ..+|+.+|++++.++.++++..... .+ +. -.+++.. .|.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-- 387 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-- 387 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH--
Confidence 358999999975544 444555 3689999999999987776543210 00 00 0133322 121
Q ss_pred HHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 192 FLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 192 ~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
.. -...|+||=..+.... .++++|+++-++++|+.+|..|+.+
T Consensus 388 --~~--~~~aDlViEav~E~l~-----~K~~vf~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 388 --AG--FDNVDIVVEAVVENPK-----VKAAVLAEVEQHVREDAILASNTST 430 (714)
T ss_pred --HH--hcCCCEEEEcCcccHH-----HHHHHHHHHHhhCCCCcEEEECCCC
Confidence 11 1356888843333221 2678999999999999999998754
No 464
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=81.63 E-value=15 Score=34.48 Aligned_cols=95 Identities=21% Similarity=0.197 Sum_probs=51.0
Q ss_pred CCceeeEeeccccHH-HHHHHhcCCCceEEEEECChHH-HHHHHhccccccCCCCCCCeEEEE-cChHHHHHhCCCCCcc
Q 020933 126 NPKKVLVIGGGDGGV-LREVSRHSSVEKIDICEIDKMV-VDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYD 202 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~v-i~~ak~~~~~~~~~~~~~~v~v~~-~D~~~~l~~~~~~~fD 202 (319)
...+|++||+|.=+. ....++..+..+|++++.+++- .++++++ + . .++. .|..+.+ ..+|
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g-------~---~~~~~~~~~~~l-----~~aD 240 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-G-------G---NAVPLDELLELL-----NEAD 240 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-C-------C---eEEeHHHHHHHH-----hcCC
Confidence 467999999875332 2222233345789999999774 4555553 1 1 1221 1222222 3579
Q ss_pred EEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 203 AVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 203 vIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
+||.-...+.. .+.++.+.+....+|.+++....
T Consensus 241 vVi~at~~~~~-------~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 241 VVISATGAPHY-------AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred EEEECCCCCch-------HHHHHHHHhhCCCCCeEEEEeCC
Confidence 99965543321 23344443333336778876543
No 465
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=81.48 E-value=3.4 Score=39.08 Aligned_cols=98 Identities=17% Similarity=0.250 Sum_probs=52.8
Q ss_pred ceeeEeeccccHHHHHHHhc---CCCceEEEEECChH-HHHHHHhcccccc---------------CCCCCCCeEEEEcC
Q 020933 128 KKVLVIGGGDGGVLREVSRH---SSVEKIDICEIDKM-VVDVSKQFFPDVA---------------VGFEDPRVTLHIGD 188 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~-vi~~ak~~~~~~~---------------~~~~~~~v~v~~~D 188 (319)
-+||+||+|+ ++.++++. .+..++.++|+|.- +-.+-|+|+-... ..+..-.+..+.++
T Consensus 41 ~kiLviGAGG--LGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~k 118 (422)
T KOG2015|consen 41 CKILVIGAGG--LGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQK 118 (422)
T ss_pred CcEEEEccCc--ccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecc
Confidence 4899999864 55666552 34567888888743 3334444431100 01122245666666
Q ss_pred hHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCc
Q 020933 189 GVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGG 235 (319)
Q Consensus 189 ~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG 235 (319)
..++..++ -.+||+||+.+..-. -+.++..+.-.|+-.|
T Consensus 119 Iqd~~~~F-Yk~F~~iicGLDsIe-------aRRwIN~mL~~l~~~g 157 (422)
T KOG2015|consen 119 IQDKPISF-YKRFDLIICGLDSIE-------ARRWINGMLVRLKLEG 157 (422)
T ss_pred hhcCCHHH-HhhhceEEecccchh-------HHHHHHHHHHHHHhcc
Confidence 65554333 367999998654322 2345555544444445
No 466
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.47 E-value=2.9 Score=40.41 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=23.8
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECC
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEID 159 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 159 (319)
...+||++|+|. |......+...++.+++.+|-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456999999974 4433333334467899999998
No 467
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=81.44 E-value=20 Score=34.00 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=53.9
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
.+.+||++|+|. |..+.++++..+ .++++++.+++-.+.+.+.+.. + ..+...+.. .+... ...+|+|
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G-~~vi~~~~~~~~~~~~~~~~Ga------~--~~i~~~~~~-~~~~~-~~~~D~v 248 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMG-HHVTVISSSDKKREEALEHLGA------D--DYLVSSDAA-EMQEA-ADSLDYI 248 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHhcCC------c--EEecCCChH-HHHHh-cCCCcEE
Confidence 457899987543 445566777655 4678888777665555443321 1 011111211 22222 2358988
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
+-- .. ....++.+.+.|+++|.++.-.
T Consensus 249 id~-~g---------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 249 IDT-VP---------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred EEC-CC---------chHHHHHHHHHhccCCEEEEEC
Confidence 732 21 1235777888999999988653
No 468
>PRK07454 short chain dehydrogenase; Provisional
Probab=81.44 E-value=24 Score=30.89 Aligned_cols=78 Identities=9% Similarity=0.073 Sum_probs=45.3
Q ss_pred CCceeeEeeccccHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH------HHhC-
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF------LKAV- 196 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~------l~~~- 196 (319)
..+++|+.|+ +|+++..++++. ...+|++++.++.-.+...+.+... ..++.++.+|..+. ++..
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST-----GVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC-----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 3467888875 566666555421 1258999999876554443333221 24688888887432 1110
Q ss_pred -CCCCccEEEEcCC
Q 020933 197 -PEGTYDAVIVDSS 209 (319)
Q Consensus 197 -~~~~fDvIi~D~~ 209 (319)
.-++.|+||....
T Consensus 79 ~~~~~id~lv~~ag 92 (241)
T PRK07454 79 EQFGCPDVLINNAG 92 (241)
T ss_pred HHcCCCCEEEECCC
Confidence 0246899997553
No 469
>PRK06141 ornithine cyclodeaminase; Validated
Probab=81.11 E-value=49 Score=31.06 Aligned_cols=112 Identities=13% Similarity=0.192 Sum_probs=59.4
Q ss_pred cEEEEEecCCee-EEEEcCeEeecccchhHHHHHHHhccccCCCCCceeeEeeccccHHHHH--HHhcCCCceEEEEECC
Q 020933 83 NVMVFQSSTYGK-VLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLRE--VSRHSSVEKIDICEID 159 (319)
Q Consensus 83 ~i~v~~~~~~g~-~L~ldg~~q~~~~de~~Y~e~l~~l~l~~~~~~~~VL~IG~G~G~~~~~--l~~~~~~~~v~~VEid 159 (319)
-+.+++. ..|+ .-++||.....-+- -.-....+. .+..++.++|++||+|.=+.... ++...+..+|.+++.+
T Consensus 84 ~v~l~d~-~tG~p~ai~d~~~lT~~RT-aa~sala~~--~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs 159 (314)
T PRK06141 84 TYLLFDG-RTGEPLALVDGTELTARRT-AAASALAAS--YLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD 159 (314)
T ss_pred EEEEEEC-CCCCEEEEEcCcchhcchh-HHHHHHHHH--HhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3545544 4454 44678866554332 111111111 12345678999999986444332 2333457899999999
Q ss_pred hHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEEcCC
Q 020933 160 KMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSS 209 (319)
Q Consensus 160 ~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~D~~ 209 (319)
++-.+...+.+... ..++.. ..+..+.+ ...|+|++-.+
T Consensus 160 ~~~a~~~a~~~~~~-----g~~~~~-~~~~~~av-----~~aDIVi~aT~ 198 (314)
T PRK06141 160 PAKAEALAAELRAQ-----GFDAEV-VTDLEAAV-----RQADIISCATL 198 (314)
T ss_pred HHHHHHHHHHHHhc-----CCceEE-eCCHHHHH-----hcCCEEEEeeC
Confidence 87665444444321 112332 34444443 35799875433
No 470
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=80.98 E-value=21 Score=34.03 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=59.4
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccE
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDv 203 (319)
.++.+||+.|+|. |..+..+++..+..+|++++.+++-.+.+++.-.. -+.....+..+.+.....+.+|+
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~--------~v~~~~~~~~~~i~~~~~~~~d~ 246 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI--------PIDFSDGDPVEQILGLEPGGVDR 246 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe--------EeccCcccHHHHHHHhhCCCCCE
Confidence 3567888876642 34445566665555788899999888888764210 01111123333333322356898
Q ss_pred EEEcCCCCCC-CccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 204 VIVDSSDPIG-PAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 204 Ii~D~~~~~~-~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|+--...... ..........+..+.++|+++|.++..
T Consensus 247 v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 284 (375)
T cd08282 247 AVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIV 284 (375)
T ss_pred EEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEE
Confidence 8742221100 000001123577888999999998753
No 471
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.90 E-value=18 Score=31.60 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=57.9
Q ss_pred CCceeeEeeccccHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH------HHhC-
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF------LKAV- 196 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~------l~~~- 196 (319)
..++||+.|++ |+++..+++.. ...+|+++..+++-.+...+.+.. ..++.++..|..+. ++..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK------YGNIHYVVGDVSSTESARNVIEKAA 76 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCeEEEECCCCCHHHHHHHHHHHH
Confidence 35689999885 44554444321 135799999988765544333321 13577777776532 1111
Q ss_pred -CCCCccEEEEcCCCCCCCc-cc------------cchHHHHHHHHHhcCCCcEEEEec
Q 020933 197 -PEGTYDAVIVDSSDPIGPA-QE------------LFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 197 -~~~~fDvIi~D~~~~~~~~-~~------------l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
.-+..|.|+.......... .. .....+++.+...++++|.+++.+
T Consensus 77 ~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 77 KVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0145788887554211110 00 001123556666777888776554
No 472
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=80.89 E-value=5.4 Score=39.66 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=56.2
Q ss_pred CCceeeEeeccccHHHHHHHhcCCCceEE------EEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCC
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHSSVEKID------ICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEG 199 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~~~~~v~------~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~ 199 (319)
..++|++||||+=+.+..+--+....+|+ ++|.+..-.+.|++. ++ . .++..+.+ .
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d------GF-----~--v~~~~Ea~-----~ 96 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN------GF-----K--VGTYEELI-----P 96 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhc------CC-----c--cCCHHHHH-----H
Confidence 46899999999855554443232334555 445555555544432 12 1 23434443 4
Q ss_pred CccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 200 TYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 200 ~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
..|+|++-.++.. ...+++.+...||||..|.+.
T Consensus 97 ~ADvVviLlPDt~-------q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 97 QADLVINLTPDKQ-------HSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred hCCEEEEcCChHH-------HHHHHHHHHhhCCCCCEEEec
Confidence 5699998776641 346789999999999999974
No 473
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=80.89 E-value=3.9 Score=35.51 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=28.7
Q ss_pred ccEEEEcCCCCCCCc---c---------c---cchHHHHHHHHHhcCCCcEEEEecCCcccC
Q 020933 201 YDAVIVDSSDPIGPA---Q---------E---LFEKPFFESVAKALRPGGVVSTQAESIWLH 247 (319)
Q Consensus 201 fDvIi~D~~~~~~~~---~---------~---l~~~~f~~~~~~~LkpgG~lv~~~~~~~~~ 247 (319)
.|+|+.|++...... . . -+..+++.++.|+|||||.++++.......
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~ 62 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIA 62 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEEC
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhh
Confidence 388888877544332 0 0 112467888999999999999987654443
No 474
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=80.86 E-value=3.6 Score=38.45 Aligned_cols=33 Identities=33% Similarity=0.538 Sum_probs=21.2
Q ss_pred eeeEeeccc-cHHHHHHHhcCCCceEEEEECChH
Q 020933 129 KVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKM 161 (319)
Q Consensus 129 ~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~ 161 (319)
+||++|+|. |.-....+...+..+++.+|.|.-
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTI 34 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 589999873 332222222457889999998753
No 475
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.63 E-value=27 Score=32.71 Aligned_cols=104 Identities=16% Similarity=0.274 Sum_probs=53.6
Q ss_pred eeeEeeccc-cHHH-HHHHhcCCCceEEEEECChHHHH-HHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEE
Q 020933 129 KVLVIGGGD-GGVL-REVSRHSSVEKIDICEIDKMVVD-VSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVI 205 (319)
Q Consensus 129 ~VL~IG~G~-G~~~-~~l~~~~~~~~v~~VEid~~vi~-~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi 205 (319)
+|.+||+|. |... ..++......++..+|++++..+ .+....... .+. ....+..+|..+ . ...|+|+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~--~~~-~~~~i~~~d~~~----l--~~aDiVi 72 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGT--PFV-KPVRIYAGDYAD----C--KGADVVV 72 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccc--ccc-CCeEEeeCCHHH----h--CCCCEEE
Confidence 588999986 3332 23344433468999999987654 222211110 112 224555555322 2 3469999
Q ss_pred EcCCCCCCCccccc-----hHHHHHHHHH---hcCCCcEEEEec
Q 020933 206 VDSSDPIGPAQELF-----EKPFFESVAK---ALRPGGVVSTQA 241 (319)
Q Consensus 206 ~D~~~~~~~~~~l~-----~~~f~~~~~~---~LkpgG~lv~~~ 241 (319)
+-...+..+....+ +...++.+.+ ...|+|++++-+
T Consensus 73 ita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 73 ITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 86655443322111 2233433332 245889887754
No 476
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=80.43 E-value=11 Score=33.10 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=23.4
Q ss_pred CCceeeEeeccc-cH-HHHHHHhcCCCceEEEEECC
Q 020933 126 NPKKVLVIGGGD-GG-VLREVSRHSSVEKIDICEID 159 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid 159 (319)
...+|+++|||. |. ++..+++. +..+++.+|.|
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 346899999985 33 33444444 67789999999
No 477
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=80.35 E-value=7.8 Score=34.32 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=44.6
Q ss_pred CCceeeEeeccccHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChH-----------HH
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGV-----------AF 192 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~-----------~~ 192 (319)
..++||+.|+ +|+++..++++. ...+|++++.++.-.+...+.+... ...++.++..|.. +.
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA----GGPQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEecccCCCHHHHHHHHHH
Confidence 4578888885 455665554421 1358999999886655444433322 2235666666652 11
Q ss_pred HHhCCCCCccEEEEcCC
Q 020933 193 LKAVPEGTYDAVIVDSS 209 (319)
Q Consensus 193 l~~~~~~~fDvIi~D~~ 209 (319)
+... .++.|+||....
T Consensus 86 ~~~~-~~~id~vi~~Ag 101 (247)
T PRK08945 86 IEEQ-FGRLDGVLHNAG 101 (247)
T ss_pred HHHH-hCCCCEEEECCc
Confidence 2211 257899998653
No 478
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=80.34 E-value=6.2 Score=36.77 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=22.8
Q ss_pred CceeeEeeccccHHHHHHHh---cCCCceEEEEECCh
Q 020933 127 PKKVLVIGGGDGGVLREVSR---HSSVEKIDICEIDK 160 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~ 160 (319)
..+||++|+|. ++.++++ ..++.+++.+|-|.
T Consensus 19 ~s~VLIvG~gG--LG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 19 KSNVLISGLGG--LGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred cCcEEEEcCCH--HHHHHHHHHHHcCCCeEEEEcCCc
Confidence 45999999974 4444443 34688999999875
No 479
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=80.31 E-value=3.6 Score=34.67 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=29.4
Q ss_pred HHHhccccCCCCCceeeEeeccccHH--HHHHHhcCCCceEEEEECChHHHH
Q 020933 115 MITHLPLCSIPNPKKVLVIGGGDGGV--LREVSRHSSVEKIDICEIDKMVVD 164 (319)
Q Consensus 115 ~l~~l~l~~~~~~~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~ 164 (319)
||.++|+...-..++||++|+|.=+. ++.|++. ..+|+.| +|+..+
T Consensus 1 ~~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VI--sp~~~~ 48 (157)
T PRK06719 1 MYNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKDT--GAFVTVV--SPEICK 48 (157)
T ss_pred CCcccceEEEcCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEE--cCccCH
Confidence 34556666556789999999986443 3344554 3678888 344433
No 480
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.29 E-value=2.7 Score=44.27 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=63.9
Q ss_pred ceeeEeeccccHH--HHHHHhcCCCceEEEEECChHHHHHHHhcccccc-----CC-CC-------CCCeEEEEcChHHH
Q 020933 128 KKVLVIGGGDGGV--LREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FE-------DPRVTLHIGDGVAF 192 (319)
Q Consensus 128 ~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-----~~-~~-------~~~v~v~~~D~~~~ 192 (319)
++|.+||+|+-+. +..++.. ..+|+.+|++++.++.+++.+.... .+ +. -.++++. .|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 387 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY--- 387 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH---
Confidence 5899999998544 3444555 3689999999999987766543210 00 00 0234332 232
Q ss_pred HHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 193 l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
.. -..-|+||=-.+... -.++++|+++-+.++|+-+|..|+.+
T Consensus 388 -~~--~~~aDlViEav~E~l-----~~K~~vf~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 388 -AG--FERVDVVVEAVVENP-----KVKAAVLAEVEQKVREDTILASNTST 430 (715)
T ss_pred -HH--hcCCCEEEecccCcH-----HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 11 134688883332211 12568999999999999999988754
No 481
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=80.27 E-value=6.5 Score=29.50 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=50.2
Q ss_pred eeeEeeccccHH--HHHHHhcC-CCceEEEE-ECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 129 KVLVIGGGDGGV--LREVSRHS-SVEKIDIC-EIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 129 ~VL~IG~G~G~~--~~~l~~~~-~~~~v~~V-Eid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
+|..||+|.-+. ++.++++. ...+|..+ +.+++-++..++.++ +.+...|..+.++ ..|+|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~~~-----~advv 65 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----------VQATADDNEEAAQ-----EADVV 65 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----------TEEESEEHHHHHH-----HTSEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----------cccccCChHHhhc-----cCCEE
Confidence 467888876443 33344442 23678855 999998876665543 3333335555554 35999
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEE
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVS 238 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv 238 (319)
|+-..... ..+.++.+ ..+.++..++
T Consensus 66 ilav~p~~-------~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 66 ILAVKPQQ-------LPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp EE-S-GGG-------HHHHHHHH-HHHHTTSEEE
T ss_pred EEEECHHH-------HHHHHHHH-hhccCCCEEE
Confidence 96554321 34667777 5566666655
No 482
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.24 E-value=13 Score=36.66 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=50.6
Q ss_pred CCceeeEeeccccH-HHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 126 NPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..++|+++|+|.-+ .....++..+ .+|+++|+|+.-...+... + .++ .+..+.+ ...|+|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~------G-----~~v--~~l~eal-----~~aDVV 271 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD------G-----FRV--MTMEEAA-----ELGDIF 271 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc------C-----CEe--cCHHHHH-----hCCCEE
Confidence 56899999998633 2333344444 4899999998764443321 1 111 1223332 357998
Q ss_pred EEcCCCCCCCccccchHHHHH-HHHHhcCCCcEEEEe
Q 020933 205 IVDSSDPIGPAQELFEKPFFE-SVAKALRPGGVVSTQ 240 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~-~~~~~LkpgG~lv~~ 240 (319)
|.-. . +...+. ...+.+|+|++++..
T Consensus 272 I~aT-G---------~~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 272 VTAT-G---------NKDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred EECC-C---------CHHHHHHHHHhcCCCCCEEEEc
Confidence 8532 1 223454 567789998887754
No 483
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=80.19 E-value=7.7 Score=35.68 Aligned_cols=89 Identities=18% Similarity=0.100 Sum_probs=52.6
Q ss_pred eeeEeeccc--cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEEEE
Q 020933 129 KVLVIGGGD--GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIV 206 (319)
Q Consensus 129 ~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvIi~ 206 (319)
+|.+||+|. |.++..+.+.. .+|+++|.+++.++.+++.-. +.....+. +. -...|+||+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~g~----------~~~~~~~~-~~-----~~~aDlVil 63 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERGL----------VDEASTDL-SL-----LKDCDLVIL 63 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCCC----------cccccCCH-hH-----hcCCCEEEE
Confidence 688999885 34555555552 479999999988887765310 11111121 11 135699996
Q ss_pred cCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 207 DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 207 D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
-.+... ..++++.+...++++- +++.+.+
T Consensus 64 avp~~~-------~~~~~~~l~~~l~~~~-ii~d~~S 92 (279)
T PRK07417 64 ALPIGL-------LLPPSEQLIPALPPEA-IVTDVGS 92 (279)
T ss_pred cCCHHH-------HHHHHHHHHHhCCCCc-EEEeCcc
Confidence 654311 3456778888887764 4454443
No 484
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=80.12 E-value=12 Score=28.31 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=50.7
Q ss_pred EEEEECChHHHHHHHhccccccCCCCCCCe-EE-EEcChHHHHHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHh
Q 020933 153 IDICEIDKMVVDVSKQFFPDVAVGFEDPRV-TL-HIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKA 230 (319)
Q Consensus 153 v~~VEid~~vi~~ak~~~~~~~~~~~~~~v-~v-~~~D~~~~l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~ 230 (319)
|..||-++...+..++.+... .+ ++ ...+..+.+.......||+|++|...+... ..++++.+++.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~-------~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~-----~~~~~~~i~~~ 68 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERA-------GYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGD-----GLELLEQIRQI 68 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-------TEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSB-----HHHHHHHHHHH
T ss_pred cEEEECCHHHHHHHHHHHHhC-------CCCEEEEECCHHHHHHHhcccCceEEEEEeeecccc-----ccccccccccc
Confidence 567899999999999988742 33 33 455665555433346799999997655433 45788888766
Q ss_pred cCCCcEEEEec
Q 020933 231 LRPGGVVSTQA 241 (319)
Q Consensus 231 LkpgG~lv~~~ 241 (319)
- ++..+++-+
T Consensus 69 ~-~~~~ii~~t 78 (112)
T PF00072_consen 69 N-PSIPIIVVT 78 (112)
T ss_dssp T-TTSEEEEEE
T ss_pred c-ccccEEEec
Confidence 6 666665543
No 485
>PRK08339 short chain dehydrogenase; Provisional
Probab=80.10 E-value=20 Score=32.28 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=45.9
Q ss_pred CCceeeEeeccccHHHHHHHhc--CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH------HHhC-
Q 020933 126 NPKKVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF------LKAV- 196 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~------l~~~- 196 (319)
..+.+|+.|++.| +++.+++. ....+|++++.++.-++...+.+... ...++.++..|..+. ++..
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 7 SGKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSE----SNVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh----cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3567888887654 44444332 11357999999987666555443321 124677888876432 2111
Q ss_pred CCCCccEEEEcCC
Q 020933 197 PEGTYDAVIVDSS 209 (319)
Q Consensus 197 ~~~~fDvIi~D~~ 209 (319)
.-+..|++|.+.-
T Consensus 82 ~~g~iD~lv~nag 94 (263)
T PRK08339 82 NIGEPDIFFFSTG 94 (263)
T ss_pred hhCCCcEEEECCC
Confidence 1256899887653
No 486
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.07 E-value=4.3 Score=42.71 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=63.8
Q ss_pred ceeeEeeccccH--HHHHHHhcCCCceEEEEECChHHHHHHHhcccccc-----CC-CC-------CCCeEEEEcChHHH
Q 020933 128 KKVLVIGGGDGG--VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FE-------DPRVTLHIGDGVAF 192 (319)
Q Consensus 128 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-----~~-~~-------~~~v~v~~~D~~~~ 192 (319)
++|.+||+|+-+ ++..++... ...|+.+|++++.++.+++++.... .+ +. -.++++. .|. +
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~- 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKA-GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-R- 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-H-
Confidence 689999999844 344445232 3689999999999888766543210 00 00 0234433 221 1
Q ss_pred HHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 193 l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
.. ..-|+||=-.+... -.++++|+.+-+.++|+.+|..|+.+
T Consensus 386 --~~--~~aDlViEav~E~~-----~~K~~v~~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 386 --GF--KHADVVIEAVFEDL-----ALKQQMVAEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred --Hh--ccCCEEeecccccH-----HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 11 34688883322211 22578999999999999999988754
No 487
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.05 E-value=27 Score=31.31 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=41.8
Q ss_pred CCceeeEeeccc-cHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH------HHHhC
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA------FLKAV 196 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~------~l~~~ 196 (319)
..+.+|+.|+++ ++++++++++. ...+|..++.++...+..++..... ....++..|..+ ++...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~v~~~~~~~ 82 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL------DAPIFLPLDVREPGQLEAVFARI 82 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh------ccceEEecCcCCHHHHHHHHHHH
Confidence 457899999876 36666665531 2357888888764332222221111 123455566432 22211
Q ss_pred --CCCCccEEEEcC
Q 020933 197 --PEGTYDAVIVDS 208 (319)
Q Consensus 197 --~~~~fDvIi~D~ 208 (319)
.-++.|++|.+.
T Consensus 83 ~~~~g~ld~lv~nA 96 (258)
T PRK07533 83 AEEWGRLDFLLHSI 96 (258)
T ss_pred HHHcCCCCEEEEcC
Confidence 125789999865
No 488
>PRK05867 short chain dehydrogenase; Provisional
Probab=79.92 E-value=22 Score=31.55 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=45.9
Q ss_pred CCceeeEeeccccHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH------HHhC-
Q 020933 126 NPKKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF------LKAV- 196 (319)
Q Consensus 126 ~~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~------l~~~- 196 (319)
+.+.+|+.|++. +++.++++.. ...+|.+++.+++-++...+.+... ..++.++..|..+. +...
T Consensus 8 ~~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 8 HGKRALITGAST-GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS-----GGKVVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-----CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 457899888754 4555544321 1357999999887666555444322 23577777776432 1111
Q ss_pred -CCCCccEEEEcCC
Q 020933 197 -PEGTYDAVIVDSS 209 (319)
Q Consensus 197 -~~~~fDvIi~D~~ 209 (319)
.-++.|++|.+..
T Consensus 82 ~~~g~id~lv~~ag 95 (253)
T PRK05867 82 AELGGIDIAVCNAG 95 (253)
T ss_pred HHhCCCCEEEECCC
Confidence 1257899997653
No 489
>PRK08324 short chain dehydrogenase; Validated
Probab=79.60 E-value=26 Score=36.58 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=44.3
Q ss_pred CceeeEeeccccHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH------HHhC--
Q 020933 127 PKKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF------LKAV-- 196 (319)
Q Consensus 127 ~~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~------l~~~-- 196 (319)
.+.||+.|++ |+++..+++.. ...+|++++.++.-++.+.+.+.. . .++.++..|..+. +...
T Consensus 422 gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-----~-~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 422 GKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-----P-DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-----c-CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3678888764 44555444321 125899999998876655544332 1 3677777775322 2111
Q ss_pred CCCCccEEEEcCC
Q 020933 197 PEGTYDAVIVDSS 209 (319)
Q Consensus 197 ~~~~fDvIi~D~~ 209 (319)
..+..|+||....
T Consensus 495 ~~g~iDvvI~~AG 507 (681)
T PRK08324 495 AFGGVDIVVSNAG 507 (681)
T ss_pred HcCCCCEEEECCC
Confidence 1246899997654
No 490
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=79.51 E-value=20 Score=33.19 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=57.1
Q ss_pred CceeeEeec--cccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhCCCCCccEE
Q 020933 127 PKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAV 204 (319)
Q Consensus 127 ~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~~~~~fDvI 204 (319)
..+||+.|+ +.|..+..+++.....+|.++.-+++-.+.+++. .. +.-+.. ..+..+.+.....+.+|+|
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~-g~------~~~~~~-~~~~~~~i~~~~~~~vd~v 220 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLEL-GA------HHVIDH-SKPLKAQLEKLGLEAVSYV 220 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHc-CC------CEEEEC-CCCHHHHHHHhcCCCCCEE
Confidence 679999985 4555666677754135788888777777777542 21 111110 1133233333324569998
Q ss_pred EEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 205 IVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 205 i~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
+ |... ....+..+.+.|+++|.++.-
T Consensus 221 l-~~~~---------~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 221 F-SLTH---------TDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred E-EcCC---------cHHHHHHHHHHhccCCEEEEE
Confidence 8 3221 124577888999999998853
No 491
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=79.46 E-value=3.2 Score=43.88 Aligned_cols=102 Identities=15% Similarity=0.091 Sum_probs=63.6
Q ss_pred ceeeEeeccccHH--HHHHHhcCCCceEEEEECChHHHHHHHhcccccc-----CC-CCC-------CCeEEEEcChHHH
Q 020933 128 KKVLVIGGGDGGV--LREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVA-----VG-FED-------PRVTLHIGDGVAF 192 (319)
Q Consensus 128 ~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~-----~~-~~~-------~~v~v~~~D~~~~ 192 (319)
++|-+||+|+-+. +..++.. ..+|+.+|++++.++.++++..... .+ +.. .+++.. .|..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-- 410 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYS-- 410 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH--
Confidence 5899999997444 3444544 3689999999999998776653220 00 100 133322 2211
Q ss_pred HHhCCCCCccEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEecCC
Q 020933 193 LKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAES 243 (319)
Q Consensus 193 l~~~~~~~fDvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~~ 243 (319)
. -..-|+||=-.+.. --.+.++|+++-+.++|+.+|..|+.+
T Consensus 411 --~--~~~aDlViEAv~E~-----l~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 411 --G--FKNADMVIEAVFED-----LSLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred --H--hccCCeehhhcccc-----HHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 1 13468877322221 122678999999999999999998754
No 492
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=79.39 E-value=38 Score=33.01 Aligned_cols=105 Identities=22% Similarity=0.253 Sum_probs=56.2
Q ss_pred eeeEeeccccHHHHH--HHhcCCCceEEEEECChHHHHHHHhccccc-cCCC--------CCCCeEEEEcChHHHHHhCC
Q 020933 129 KVLVIGGGDGGVLRE--VSRHSSVEKIDICEIDKMVVDVSKQFFPDV-AVGF--------EDPRVTLHIGDGVAFLKAVP 197 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~--l~~~~~~~~v~~VEid~~vi~~ak~~~~~~-~~~~--------~~~~v~v~~~D~~~~l~~~~ 197 (319)
+|-+||+|.-+.... +++. ..+|+++|+++..++..++..... ..++ ...++++. .|..+.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~~---- 74 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDAI---- 74 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc--CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHHH----
Confidence 588899986554333 4444 247999999999887655421100 0000 01123322 2322222
Q ss_pred CCCccEEEEcCCCCCCCc---cccchHHHHHHHHHhcCCCcEEEEec
Q 020933 198 EGTYDAVIVDSSDPIGPA---QELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 198 ~~~fDvIi~D~~~~~~~~---~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
...|+||+..+.+.... .--+-....+.+.+.|++|-+++..+
T Consensus 75 -~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 75 -RDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred -hhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 34699988666553211 11112344566777888877666543
No 493
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=79.30 E-value=19 Score=33.51 Aligned_cols=100 Identities=21% Similarity=0.269 Sum_probs=57.3
Q ss_pred CCCCceeeEeecc-ccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHh-CCCCCc
Q 020933 124 IPNPKKVLVIGGG-DGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKA-VPEGTY 201 (319)
Q Consensus 124 ~~~~~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~-~~~~~f 201 (319)
.....+||+.|+| .|..+..+++..+...|.++.-+++-.+.++++ .. +.-+.....+..+.+.. .....+
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~-g~------~~~~~~~~~~~~~~i~~~~~~~~v 235 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKL-GA------DYTIDAAEEDLVEKVRELTDGRGA 235 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-CC------cEEecCCccCHHHHHHHHhCCcCC
Confidence 3456799999754 344445566665544388888888887777543 11 10011111122222222 223459
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|+|+.... ....+..+.+.|+++|.++.-
T Consensus 236 d~vld~~~----------~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 236 DVVIVATG----------SPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred CEEEECCC----------ChHHHHHHHHHhhcCCEEEEE
Confidence 99884322 124677888999999998864
No 494
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=79.21 E-value=19 Score=32.47 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=57.7
Q ss_pred CCCceeeEeec--cccHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHHHHhC-CCCCc
Q 020933 125 PNPKKVLVIGG--GDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAFLKAV-PEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~l~~~-~~~~f 201 (319)
.+..+||+.|+ +.|..+..+++..+ .+|+++..+++-.+.++++ .. +.-+.....+....+... ....+
T Consensus 135 ~~g~~vlI~g~~g~~g~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~-g~------~~~~~~~~~~~~~~~~~~~~~~~~ 206 (320)
T cd05286 135 KPGDTVLVHAAAGGVGLLLTQWAKALG-ATVIGTVSSEEKAELARAA-GA------DHVINYRDEDFVERVREITGGRGV 206 (320)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHC-CC------CEEEeCCchhHHHHHHHHcCCCCe
Confidence 35679999994 45556666777654 5788888888888877653 21 100111111222223222 23569
Q ss_pred cEEEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEe
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQ 240 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~ 240 (319)
|+|+.-... .....+.+.|+++|.++..
T Consensus 207 d~vl~~~~~-----------~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 207 DVVYDGVGK-----------DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred eEEEECCCc-----------HhHHHHHHhhccCcEEEEE
Confidence 999842221 2456677889999998864
No 495
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=79.20 E-value=4.7 Score=38.99 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=23.3
Q ss_pred CCceeeEeeccc-cHHHHHHHhcCCCceEEEEECC
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEID 159 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 159 (319)
...+||++|+|. |......+...++.+++.+|-|
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 356999999985 3333333333467899999988
No 496
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=79.13 E-value=32 Score=32.85 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=54.2
Q ss_pred CCCceeeEeeccc-cHHHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEc--ChHHHHHhCCCCCc
Q 020933 125 PNPKKVLVIGGGD-GGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIG--DGVAFLKAVPEGTY 201 (319)
Q Consensus 125 ~~~~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~--D~~~~l~~~~~~~f 201 (319)
....+||++|+|. |..+..+++..+..+|++++.+++-.+.+++ +.. +.-+..... |..+.+.......+
T Consensus 189 ~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~-lGa------~~~i~~~~~~~~~~~~v~~~~~~~~ 261 (373)
T cd08299 189 TPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE-LGA------TECINPQDYKKPIQEVLTEMTDGGV 261 (373)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC------ceEecccccchhHHHHHHHHhCCCC
Confidence 3467899997543 2233445665554479999999988888865 321 111111111 12233322213469
Q ss_pred cEEEEcCCCCCCCccccchHHHHHH-HHHhcCCCcEEEEec
Q 020933 202 DAVIVDSSDPIGPAQELFEKPFFES-VAKALRPGGVVSTQA 241 (319)
Q Consensus 202 DvIi~D~~~~~~~~~~l~~~~f~~~-~~~~LkpgG~lv~~~ 241 (319)
|+|+- ... ....+.. +...++++|.++...
T Consensus 262 d~vld-~~g---------~~~~~~~~~~~~~~~~G~~v~~g 292 (373)
T cd08299 262 DFSFE-VIG---------RLDTMKAALASCHEGYGVSVIVG 292 (373)
T ss_pred eEEEE-CCC---------CcHHHHHHHHhhccCCCEEEEEc
Confidence 98773 321 1134555 444556889888654
No 497
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=78.97 E-value=20 Score=31.48 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=44.7
Q ss_pred ceeeEeeccccHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHHH---------HHhC
Q 020933 128 KKVLVIGGGDGGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVAF---------LKAV 196 (319)
Q Consensus 128 ~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~~---------l~~~ 196 (319)
++||+.|+ +|.++..+++.. ...+|++++.++...+.....+... ..++.++..|..+. +...
T Consensus 2 ~~vlItGa-~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (255)
T TIGR01963 2 KTALVTGA-ASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA-----GGSVIYLVADVTKEDEIADMIAAAAAE 75 (255)
T ss_pred CEEEEcCC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 46787774 566666665431 1247999999877655444433221 24678888876532 1111
Q ss_pred CCCCccEEEEcCC
Q 020933 197 PEGTYDAVIVDSS 209 (319)
Q Consensus 197 ~~~~fDvIi~D~~ 209 (319)
....|+||....
T Consensus 76 -~~~~d~vi~~a~ 87 (255)
T TIGR01963 76 -FGGLDILVNNAG 87 (255)
T ss_pred -cCCCCEEEECCC
Confidence 245899997653
No 498
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=78.77 E-value=18 Score=33.68 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=50.9
Q ss_pred CCceeeEeeccccH-HHHHHHhcCCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEE-cChHHHHHhCCCCCccE
Q 020933 126 NPKKVLVIGGGDGG-VLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHI-GDGVAFLKAVPEGTYDA 203 (319)
Q Consensus 126 ~~~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~-~D~~~~l~~~~~~~fDv 203 (319)
.+++|++||.|.-+ .+...++..+ .+|++++.++...+.++.. . .+++. .+..+. -..+|+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~-----l~~aDi 213 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEE-----VGKIDI 213 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHH-----hCCCCE
Confidence 46899999997533 2223344444 5899999998766655432 1 12211 122222 246899
Q ss_pred EEEcCCCCCCCccccchHHHHHHHHHhcCCCcEEEEec
Q 020933 204 VIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQA 241 (319)
Q Consensus 204 Ii~D~~~~~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 241 (319)
||.-.+. .+ +-+...+.++|+++++--+
T Consensus 214 VI~t~p~------~~----i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 214 IFNTIPA------LV----LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred EEECCCh------hh----hhHHHHHcCCCCcEEEEEc
Confidence 9964321 11 2244556788988776433
No 499
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.69 E-value=47 Score=29.58 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=44.0
Q ss_pred CCceeeEeeccc-cHHHHHHHhcC--CCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH------HHHhC
Q 020933 126 NPKKVLVIGGGD-GGVLREVSRHS--SVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA------FLKAV 196 (319)
Q Consensus 126 ~~~~VL~IG~G~-G~~~~~l~~~~--~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~------~l~~~ 196 (319)
..+.+|+.|+++ +++++.+++.. ...+|+.+..+....+..++.. ..++.++..|..+ +++..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV--------DEEDLLVECDVASDESIERAFATI 77 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc--------cCceeEEeCCCCCHHHHHHHHHHH
Confidence 457899999874 55666655431 2367888887755444333321 1356677777642 22111
Q ss_pred --CCCCccEEEEcC
Q 020933 197 --PEGTYDAVIVDS 208 (319)
Q Consensus 197 --~~~~fDvIi~D~ 208 (319)
.-++.|++|.+.
T Consensus 78 ~~~~g~iD~lv~nA 91 (252)
T PRK06079 78 KERVGKIDGIVHAI 91 (252)
T ss_pred HHHhCCCCEEEEcc
Confidence 125789999765
No 500
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.67 E-value=22 Score=34.74 Aligned_cols=70 Identities=16% Similarity=0.298 Sum_probs=45.5
Q ss_pred eeeEeeccccHHHHHHHhc--CCCceEEEEECChHHHHHHHhccccccCCCCCCCeEEEEcChHH--HHHhCCCCCccEE
Q 020933 129 KVLVIGGGDGGVLREVSRH--SSVEKIDICEIDKMVVDVSKQFFPDVAVGFEDPRVTLHIGDGVA--FLKAVPEGTYDAV 204 (319)
Q Consensus 129 ~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~ak~~~~~~~~~~~~~~v~v~~~D~~~--~l~~~~~~~fDvI 204 (319)
+|+++|+ |.+++.+++. ....+|+++|.|++.++.+++. ..++++.+|+.+ .+....-..+|.|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~----------~~~~~~~gd~~~~~~l~~~~~~~a~~v 69 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR----------LDVRTVVGNGSSPDVLREAGAEDADLL 69 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh----------cCEEEEEeCCCCHHHHHHcCCCcCCEE
Confidence 6888887 4566665542 1235799999999987766542 246788888754 3333323578988
Q ss_pred EEcCCC
Q 020933 205 IVDSSD 210 (319)
Q Consensus 205 i~D~~~ 210 (319)
++-..+
T Consensus 70 i~~~~~ 75 (453)
T PRK09496 70 IAVTDS 75 (453)
T ss_pred EEecCC
Confidence 865443
Done!