BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020934
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
pdb|2CFT|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase With Its Substrate
Length = 298
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 220 EEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257
E I ++F ++ +MVGDR TDI++G+R G T+LT
Sbjct: 222 ECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLT 259
>pdb|1YDF|A Chain A, Crystal Structure Of A Had-like Phosphatase From
Streptococcus Pneumoniae
Length = 257
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 224 KHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTIL-TEPLSLAEE 265
+H G + +LIMVGD TDI G NG T+L T + AEE
Sbjct: 192 EHLGLEREELIMVGDNYLTDIRAGIDNGIPTLLVTTGFTKAEE 234
>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
pdb|2P27|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Mg2+ At 1.9 A Resolution
pdb|2P69|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Plp
Length = 306
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 220 EEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257
E I ++F ++ + VGDR TDI++G+R G T+LT
Sbjct: 222 ECITENFSIDPARTLXVGDRLETDILFGHRCGXTTVLT 259
>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
Length = 298
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 220 EEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257
E I ++F ++ + VGDR TDI++G+R G T+LT
Sbjct: 222 ECITENFSIDPARTLXVGDRLETDILFGHRCGXTTVLT 259
>pdb|1YS9|A Chain A, Crystal Sructure Of Phosphatase Spy1043 From Streptococcus
Pyogenes
Length = 254
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 226 FGCQSSQLIMVGDRPFTDIVYGNRNGFLTIL 256
G Q S+ +MVGD TDI+ G +N TIL
Sbjct: 194 LGIQRSEAVMVGDNYLTDIMAGIQNDIATIL 224
>pdb|1YV9|A Chain A, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
pdb|1YV9|B Chain B, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
Length = 264
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 225 HFGCQSSQLIMVGDRPFTDIVYGNRNGFLTIL 256
H G + Q+IMVGD TDI G +NG ++L
Sbjct: 195 HLGVEKEQVIMVGDNYETDIQSGIQNGIDSLL 226
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 194 SKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYG-NRNGF 252
+K KL+ ++H + G+++ I G + ++ +GD F DI+ R G+
Sbjct: 326 TKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGW 385
Query: 253 LTILTEPLSLAEE 265
T L P LA+E
Sbjct: 386 RTFLVIP-ELAQE 397
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 194 SKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYG-NRNGF 252
+K KL+ ++H + G+++ I G + ++ +GD F DI+ R G+
Sbjct: 325 TKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGW 384
Query: 253 LTILTEPLSLAEE 265
T L P LA+E
Sbjct: 385 RTFLVIP-ELAQE 396
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 194 SKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYG-NRNGF 252
+K KL+ ++H + G+++ I G + ++ +GD F DI+ R G+
Sbjct: 326 TKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGW 385
Query: 253 LTILTEPLSLAEE 265
T L P LA+E
Sbjct: 386 RTFLVIP-ELAQE 397
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 194 SKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYG-NRNGF 252
+K KL+ ++H + G+++ I G + ++ +GD F DI+ R G+
Sbjct: 326 TKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGW 385
Query: 253 LTILTEPLSLAEE 265
T L P LA+E
Sbjct: 386 RTFLVIP-ELAQE 397
>pdb|1E44|B Chain B, Ribonuclease Domain Of Colicin E3 In Complex With Its
Immunity Protein
Length = 96
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 58 PTANSFSKEQEENLRKDNKLHP-DQNHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRY 116
P N K + K K++ D H L+ Y ++D LG+ DP++ NQ + +P+
Sbjct: 32 PKQNGGGKRKRWTGDKGRKIYEWDSQHGELEG-YRASDGQHLGSFDPKTGNQLKGPDPKR 90
Query: 117 NKDKY 121
N KY
Sbjct: 91 NIKKY 95
>pdb|1VJR|A Chain A, Crystal Structure Of 4-nitrophenylphosphatase (tm1742)
From Thermotoga Maritima At 2.40 A Resolution
Length = 271
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 222 IEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257
I + FG + VGDR +TD+ G G ++IL
Sbjct: 204 ISEKFGVPKERXAXVGDRLYTDVKLGKNAGIVSILV 239
>pdb|1PW5|A Chain A, Putative Nagd Protein
Length = 253
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 222 IEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257
I + FG + VGDR +TD+ G G ++IL
Sbjct: 192 ISEKFGVPKERXAXVGDRLYTDVKLGKNAGIVSILV 227
>pdb|2XFZ|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 1 Of 4)
pdb|2XG1|Y Chain Y, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 3 Of 4)
Length = 97
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 58 PTANSFSKEQEENLRKDNKLHPDQNHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRYN 117
P N K + K K++ + + Y ++D LG+ DP++ NQ + +P+ N
Sbjct: 33 PKQNGGGKRKRWTGDKGRKIYEWDSQAGELEGYRASDGQHLGSFDPKTGNQLKGPDPKRN 92
Query: 118 KDKY 121
KY
Sbjct: 93 IKKY 96
>pdb|1WVI|A Chain A, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|B Chain B, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|C Chain C, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|D Chain D, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
Length = 257
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 225 HFGCQSSQLIMVGDRPFTDIVYGNRNGFLTIL 256
G + + IMVGD TDI G +N T+L
Sbjct: 193 RLGVKRHEAIMVGDNYLTDITAGIKNDIATLL 224
>pdb|2B5U|A Chain A, Crystal Structure Of Colicin E3 V206c Mutant In Complex
With Its Immunity Protein
pdb|2B5U|C Chain C, Crystal Structure Of Colicin E3 V206c Mutant In Complex
With Its Immunity Protein
Length = 551
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 58 PTANSFSKEQEENLRKDNKLHP-DQNHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRY 116
P N K + K K++ D H L + Y ++D LG+ DP++ NQ + +P+
Sbjct: 487 PKQNGGGKRKRWTGDKGRKIYEWDSQHGEL-EGYRASDGQHLGSFDPKTGNQLKGPDPKR 545
Query: 117 NKDKY 121
N KY
Sbjct: 546 NIKKY 550
>pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
pdb|1JCH|C Chain C, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
Length = 551
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 58 PTANSFSKEQEENLRKDNKLHP-DQNHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRY 116
P N K + K K++ D H L + Y ++D LG+ DP++ NQ + +P+
Sbjct: 487 PKQNGGGKRKRWTGDKGRKIYEWDSQHGEL-EGYRASDGQHLGSFDPKTGNQLKGPDPKR 545
Query: 117 NKDKY 121
N KY
Sbjct: 546 NIKKY 550
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 212 VKKPAGTAEEIEKHFGCQSSQLIMVGDRPFT----DIVYGNRNGFLTILT 257
VK P +EI KH S + + D+PF D +Y N G L +T
Sbjct: 220 VKMPKDQIQEISKHAQSSSRKTLSSQDKPFNLRSRDPIYSNNYGKLYEIT 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,956,984
Number of Sequences: 62578
Number of extensions: 369134
Number of successful extensions: 758
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 20
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)