BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020934
(319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54452|YQEG_BACSU Uncharacterized protein YqeG OS=Bacillus subtilis (strain 168)
GN=yqeG PE=4 SV=1
Length = 172
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 13/149 (8%)
Query: 143 NVEGIVSS--TVVFAKDRHLALPHVTVPDIRYIDW-AELQRRGFKGLYEYDNDASKARKL 199
NV+GI++ + DR A P R I+W E++ G K +N+ + +
Sbjct: 27 NVKGIITDLDNTLVEWDRPNATP-------RLIEWFEEMKEHGIKVTIVSNNNERRVKLF 79
Query: 200 EGKIGIKVIRHRVKKPAGTA-EEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258
+GI I ++ +KP G A ++ + +++GD+ TD++ GNRNG+ TIL
Sbjct: 80 SEPLGIPFI-YKARKPMGKAFNRAVRNMELKKEDCVVIGDQLLTDVLGGNRNGYHTILVV 138
Query: 259 PLSLAEEPFIVRQVRKLEVTIVNRWFRRG 287
P++ + + FI R R++E I++ R+G
Sbjct: 139 PVA-SSDGFITRFNRQVERRILSALKRKG 166
>sp|P38812|GEP4_YEAST Phosphatidylglycerophosphatase GEP4, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GEP4 PE=1
SV=1
Length = 185
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 54/117 (46%), Gaps = 20/117 (17%)
Query: 152 VVFAKDRHLALPH--VTVPDIRYIDWAELQRRGF--KGLY--------EYDNDASKARKL 199
VV KD +A PH PD Y+ E R + K L D D S+A+ L
Sbjct: 42 VVLDKDNCIAFPHDDKIWPD--YLQHWETLRSKYSNKALLIVSNTAGSNSDKDYSQAKLL 99
Query: 200 EGKIGIKVIRHRVKKPAGTAEEIEKHFG-----CQSSQLIMVGDRPFTDIVYGNRNG 251
E K GI V+RH KKP G EI +F ++ +VGDR FTDI+ N G
Sbjct: 100 EDKTGIPVLRHSTKKP-GCHNEILDYFYRNKTITNPKEVAVVGDRLFTDILMANLMG 155
>sp|Q3ZBF9|PLPP_BOVIN Pyridoxal phosphate phosphatase OS=Bos taurus GN=PDXP PE=1 SV=1
Length = 296
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 220 EEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257
E I +HF + +MVGDR TDI++G+R G T+LT
Sbjct: 220 ECITEHFSVDPGRTLMVGDRLETDILFGHRCGMTTVLT 257
>sp|Q8VD52|PLPP_RAT Pyridoxal phosphate phosphatase OS=Rattus norvegicus GN=Pdxp PE=1
SV=2
Length = 309
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 222 IEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257
I + F ++++MVGDR TDI++G+R G T+LT
Sbjct: 218 ITEDFSVDPARMLMVGDRLETDILFGHRCGMTTVLT 253
>sp|Q96GD0|PLPP_HUMAN Pyridoxal phosphate phosphatase OS=Homo sapiens GN=PDXP PE=1 SV=2
Length = 296
Score = 38.1 bits (87), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 220 EEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257
E I ++F ++ +MVGDR TDI++G+R G T+LT
Sbjct: 220 ECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLT 257
>sp|Q9Y7U3|GEP4_SCHPO Probable phosphatidylglycerophosphatase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gep4 PE=3 SV=2
Length = 209
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 27/121 (22%)
Query: 152 VVFAKDRHLALPHVTVPDIRYIDWAELQR-RGFKGLY---------------EYDNDASK 195
+V KD + LP+ T I AEL++ R F+ +Y + D
Sbjct: 54 LVLDKDNCITLPNETT-----IAEAELKKIREFQNIYGEKNVILLSNSIGTRKLDPTGEL 108
Query: 196 ARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQS-----SQLIMVGDRPFTDIVYGNRN 250
A + K I V+RH KP T EE+ + S SQ++ +GDR TDI N
Sbjct: 109 AAHFQQKWNIPVVRHSKLKPLCT-EELYTYLSNNSHVSSASQILFIGDRLLTDITLANIM 167
Query: 251 G 251
G
Sbjct: 168 G 168
>sp|P60487|PLPP_MOUSE Pyridoxal phosphate phosphatase OS=Mus musculus GN=Pdxp PE=1 SV=1
Length = 292
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 222 IEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257
I + F ++ +MVGDR TDI++G+R G T+LT
Sbjct: 218 ITEDFSVDPARTLMVGDRLETDILFGHRCGMTTVLT 253
>sp|A6NDG6|PGP_HUMAN Phosphoglycolate phosphatase OS=Homo sapiens GN=PGP PE=1 SV=1
Length = 321
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 222 IEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257
+ + +G + +MVGDR TDI+ G G TILT
Sbjct: 244 VSQEYGINPERTVMVGDRLDTDILLGATCGLKTILT 279
>sp|Q2T9S4|PGP_BOVIN Phosphoglycolate phosphatase OS=Bos taurus GN=PGP PE=2 SV=1
Length = 321
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 222 IEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257
+ + +G + +MVGDR TDI+ G G TILT
Sbjct: 244 VSQEYGIHPERTVMVGDRLDTDILLGVTCGLKTILT 279
>sp|Q2KX38|SYC_BORA1 Cysteine--tRNA ligase OS=Bordetella avium (strain 197N) GN=cysS
PE=3 SV=1
Length = 483
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 155 AKDR-HLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVK 213
A DR + AL +VT PD+ IDW E Q + FK D ++S A ++ +V R R
Sbjct: 332 ALDRLYQALANVT-PDVAGIDWNEAQAQAFKAAMNDDFNSSGAVAALFELAGQVNRERDS 390
Query: 214 KPAGTAEEIEKHFG 227
+ AG + + G
Sbjct: 391 RAAGQLKALGAVLG 404
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,148,420
Number of Sequences: 539616
Number of extensions: 5121392
Number of successful extensions: 13155
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 13131
Number of HSP's gapped (non-prelim): 29
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)