Query 020934
Match_columns 319
No_of_seqs 258 out of 1634
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2179 Predicted hydrolase of 100.0 1.6E-28 3.5E-33 216.7 13.3 140 151-293 30-173 (175)
2 PF09419 PGP_phosphatase: Mito 99.8 2.8E-21 6E-26 171.6 8.8 106 154-260 10-167 (168)
3 KOG2961 Predicted hydrolase (H 99.8 1.9E-19 4.1E-24 157.8 11.1 140 140-280 1-189 (190)
4 TIGR01668 YqeG_hyp_ppase HAD s 99.8 2E-17 4.3E-22 145.2 14.8 138 152-291 28-169 (170)
5 COG0647 NagD Predicted sugar p 99.6 5.8E-15 1.2E-19 140.0 8.3 167 82-265 59-243 (269)
6 TIGR01452 PGP_euk phosphoglyco 99.5 3.9E-14 8.5E-19 132.9 10.3 165 82-261 53-251 (279)
7 TIGR01662 HAD-SF-IIIA HAD-supe 99.5 1.7E-13 3.8E-18 113.8 11.0 86 174-259 33-132 (132)
8 KOG3085 Predicted hydrolase (H 99.5 5.4E-14 1.2E-18 131.2 6.9 129 125-258 70-213 (237)
9 PRK10444 UMP phosphatase; Prov 99.4 3.5E-13 7.7E-18 125.6 8.8 151 82-258 52-219 (248)
10 TIGR01428 HAD_type_II 2-haloal 99.4 1.3E-12 2.8E-17 115.2 11.0 87 174-261 100-195 (198)
11 TIGR00213 GmhB_yaeD D,D-heptos 99.4 1.7E-12 3.7E-17 113.8 11.5 106 152-258 4-151 (176)
12 COG1011 Predicted hydrolase (H 99.4 1.2E-12 2.6E-17 116.5 10.3 87 174-261 107-202 (229)
13 PRK06769 hypothetical protein; 99.4 2.6E-12 5.5E-17 113.2 11.0 85 174-259 36-138 (173)
14 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.4 2E-12 4.4E-17 119.9 10.1 157 83-258 53-223 (249)
15 TIGR02252 DREG-2 REG-2-like, H 99.4 2.2E-12 4.8E-17 113.9 9.2 131 124-256 61-203 (203)
16 TIGR02253 CTE7 HAD superfamily 99.4 3.8E-12 8.3E-17 113.4 10.4 86 174-259 102-196 (221)
17 TIGR01656 Histidinol-ppas hist 99.4 4.6E-12 9.9E-17 108.2 10.1 84 174-258 35-145 (147)
18 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.3 2.1E-12 4.5E-17 120.5 8.1 154 82-258 56-224 (257)
19 PF13419 HAD_2: Haloacid dehal 99.3 5.6E-12 1.2E-16 105.4 9.8 83 174-257 85-176 (176)
20 TIGR01261 hisB_Nterm histidino 99.3 8.7E-12 1.9E-16 109.4 10.4 87 174-261 37-150 (161)
21 PLN02770 haloacid dehalogenase 99.3 1.8E-11 3.9E-16 113.0 10.3 84 174-258 116-208 (248)
22 COG0546 Gph Predicted phosphat 99.3 2E-11 4.3E-16 110.8 10.3 87 173-260 96-192 (220)
23 PRK11587 putative phosphatase; 99.3 1.3E-11 2.9E-16 111.0 8.8 85 174-259 91-183 (218)
24 TIGR01664 DNA-3'-Pase DNA 3'-p 99.3 2.1E-11 4.6E-16 107.3 9.9 83 174-256 50-160 (166)
25 PRK08942 D,D-heptose 1,7-bisph 99.3 6.7E-11 1.5E-15 103.9 12.6 84 174-258 37-147 (181)
26 PRK09449 dUMP phosphatase; Pro 99.3 3.1E-11 6.8E-16 108.1 10.6 85 174-259 103-197 (224)
27 KOG2882 p-Nitrophenyl phosphat 99.3 1.5E-11 3.3E-16 117.8 8.9 166 83-263 74-275 (306)
28 TIGR01422 phosphonatase phosph 99.3 2.8E-11 6E-16 111.1 10.0 84 174-258 107-201 (253)
29 PLN02645 phosphoglycolate phos 99.2 3.2E-11 7E-16 115.4 10.5 167 82-258 79-275 (311)
30 TIGR01509 HAD-SF-IA-v3 haloaci 99.2 4.4E-11 9.5E-16 102.5 10.1 82 174-257 93-183 (183)
31 PRK13226 phosphoglycolate phos 99.2 4E-11 8.7E-16 109.1 10.2 84 174-258 103-195 (229)
32 PLN03243 haloacid dehalogenase 99.2 3.7E-11 7.9E-16 112.8 10.2 86 174-260 117-211 (260)
33 TIGR01454 AHBA_synth_RP 3-amin 99.2 4.9E-11 1.1E-15 105.9 10.4 84 174-258 83-175 (205)
34 TIGR02254 YjjG/YfnB HAD superf 99.2 5.2E-11 1.1E-15 105.6 10.2 85 174-259 105-199 (224)
35 PF13242 Hydrolase_like: HAD-h 99.2 2E-11 4.4E-16 93.4 6.3 52 212-263 2-55 (75)
36 TIGR03351 PhnX-like phosphonat 99.2 4.4E-11 9.5E-16 106.9 9.3 84 174-258 95-191 (220)
37 TIGR01449 PGP_bact 2-phosphogl 99.2 5E-11 1.1E-15 105.4 9.2 84 174-258 93-185 (213)
38 PRK09456 ?-D-glucose-1-phospha 99.2 6.1E-11 1.3E-15 105.3 9.8 85 174-259 92-186 (199)
39 PRK10826 2-deoxyglucose-6-phos 99.2 4.9E-11 1.1E-15 107.3 9.3 85 174-259 100-193 (222)
40 PRK13288 pyrophosphatase PpaX; 99.2 5.3E-11 1.2E-15 106.3 9.2 84 174-258 90-182 (214)
41 PRK14988 GMP/IMP nucleotidase; 99.2 9.6E-11 2.1E-15 106.9 10.6 87 174-261 101-198 (224)
42 TIGR01990 bPGM beta-phosphoglu 99.2 8.1E-11 1.8E-15 101.7 8.6 82 174-258 95-185 (185)
43 PRK10748 flavin mononucleotide 99.2 1.3E-10 2.7E-15 106.6 9.0 81 174-260 121-210 (238)
44 PRK13478 phosphonoacetaldehyde 99.1 2.1E-10 4.6E-15 106.5 10.5 84 174-258 109-203 (267)
45 TIGR02247 HAD-1A3-hyp Epoxide 99.1 1E-10 2.2E-15 104.0 8.1 85 174-259 102-197 (211)
46 TIGR02009 PGMB-YQAB-SF beta-ph 99.1 1.3E-10 2.9E-15 100.3 8.5 81 174-257 96-185 (185)
47 PRK05446 imidazole glycerol-ph 99.1 5.9E-10 1.3E-14 109.6 13.7 98 174-276 38-162 (354)
48 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.1 2.2E-10 4.8E-15 105.3 9.7 166 82-258 58-241 (242)
49 PRK10725 fructose-1-P/6-phosph 99.1 2.3E-10 5E-15 99.5 9.2 84 173-258 94-186 (188)
50 PLN02575 haloacid dehalogenase 99.1 3.5E-10 7.6E-15 112.2 10.9 85 174-259 224-317 (381)
51 TIGR01460 HAD-SF-IIA Haloacid 99.1 4.6E-10 1E-14 103.3 10.1 158 83-258 50-234 (236)
52 TIGR01993 Pyr-5-nucltdase pyri 99.1 6.6E-10 1.4E-14 97.0 10.0 81 176-257 91-184 (184)
53 TIGR01456 CECR5 HAD-superfamil 99.1 4.1E-10 8.8E-15 108.4 9.0 165 83-262 56-296 (321)
54 COG0241 HisB Histidinol phosph 99.1 9.6E-10 2.1E-14 99.1 10.4 107 151-258 7-149 (181)
55 PRK10563 6-phosphogluconate ph 99.1 7.1E-10 1.5E-14 99.3 9.2 82 176-258 95-186 (221)
56 PLN02779 haloacid dehalogenase 99.1 8.5E-10 1.8E-14 104.6 10.1 84 174-258 152-246 (286)
57 PLN02940 riboflavin kinase 99.0 9.9E-10 2.1E-14 108.4 10.0 84 174-258 101-194 (382)
58 TIGR01691 enolase-ppase 2,3-di 99.0 1.3E-09 2.9E-14 100.4 9.8 84 174-258 103-196 (220)
59 PRK13223 phosphoglycolate phos 99.0 1.5E-09 3.3E-14 102.0 10.2 84 174-258 109-201 (272)
60 PRK13222 phosphoglycolate phos 99.0 1.5E-09 3.2E-14 96.6 9.4 84 174-258 101-193 (226)
61 TIGR02244 HAD-IG-Ncltidse HAD 99.0 1.4E-09 3E-14 106.7 9.6 126 126-259 150-324 (343)
62 PRK13225 phosphoglycolate phos 99.0 2E-09 4.3E-14 101.9 10.4 84 174-258 150-239 (273)
63 PLN02811 hydrolase 99.0 1.5E-09 3.1E-14 98.1 9.0 84 174-258 86-184 (220)
64 KOG3040 Predicted sugar phosph 99.0 7.4E-10 1.6E-14 102.1 6.7 154 83-258 59-226 (262)
65 TIGR01670 YrbI-phosphatas 3-de 99.0 2.4E-09 5.1E-14 92.7 9.1 82 174-258 36-118 (154)
66 PRK09484 3-deoxy-D-manno-octul 98.9 4.5E-09 9.8E-14 93.4 9.5 82 174-258 56-138 (183)
67 TIGR01548 HAD-SF-IA-hyp1 haloa 98.9 3.4E-09 7.3E-14 93.8 8.1 77 172-250 112-197 (197)
68 COG0637 Predicted phosphatase/ 98.9 3.2E-09 6.9E-14 97.1 8.0 85 174-259 94-187 (221)
69 TIGR01685 MDP-1 magnesium-depe 98.9 4E-09 8.7E-14 94.3 7.3 84 174-258 53-157 (174)
70 PF00702 Hydrolase: haloacid d 98.8 1E-08 2.2E-13 89.7 8.4 78 173-251 134-215 (215)
71 TIGR02726 phenyl_P_delta pheny 98.8 1.2E-08 2.7E-13 90.5 8.8 82 174-257 42-124 (169)
72 PLN02919 haloacid dehalogenase 98.8 1.4E-08 3E-13 111.9 11.0 85 174-259 169-263 (1057)
73 TIGR01549 HAD-SF-IA-v1 haloaci 98.8 2.7E-08 5.8E-13 84.0 9.1 75 174-251 72-154 (154)
74 cd01427 HAD_like Haloacid deha 98.8 6E-08 1.3E-12 77.1 10.4 83 174-257 32-139 (139)
75 PHA02597 30.2 hypothetical pro 98.8 2.9E-08 6.4E-13 87.5 9.1 82 174-259 82-175 (197)
76 TIGR00338 serB phosphoserine p 98.8 3.2E-08 6.9E-13 88.4 9.1 84 174-259 93-195 (219)
77 PHA02530 pseT polynucleotide k 98.8 2.6E-08 5.7E-13 93.4 8.9 84 174-258 195-296 (300)
78 PRK06698 bifunctional 5'-methy 98.7 5.2E-08 1.1E-12 97.9 9.8 82 174-258 338-427 (459)
79 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.6 2.6E-07 5.7E-12 80.6 8.9 84 174-259 88-190 (201)
80 TIGR01672 AphA HAD superfamily 98.5 8.1E-07 1.8E-11 83.1 10.2 78 174-258 122-211 (237)
81 TIGR01493 HAD-SF-IA-v2 Haloaci 98.5 1.8E-07 3.9E-12 80.6 5.2 66 184-250 101-175 (175)
82 TIGR01686 FkbH FkbH-like domai 98.5 5.4E-07 1.2E-11 86.6 9.0 79 174-253 39-125 (320)
83 TIGR01663 PNK-3'Pase polynucle 98.5 7.3E-07 1.6E-11 92.0 9.9 78 174-252 205-305 (526)
84 TIGR01681 HAD-SF-IIIC HAD-supe 98.4 6.8E-07 1.5E-11 75.2 7.6 74 174-248 37-125 (128)
85 PRK11009 aphA acid phosphatase 98.4 1.7E-06 3.7E-11 81.0 10.1 78 174-258 122-211 (237)
86 smart00577 CPDc catalytic doma 98.4 3.1E-07 6.6E-12 78.9 4.8 81 174-261 53-142 (148)
87 PLN02954 phosphoserine phospha 98.3 4.4E-06 9.5E-11 74.9 10.2 83 174-259 92-197 (224)
88 PRK09552 mtnX 2-hydroxy-3-keto 98.3 2.5E-06 5.4E-11 77.1 7.9 77 174-252 82-181 (219)
89 PRK11133 serB phosphoserine ph 98.3 4.6E-06 9.9E-11 81.2 9.6 82 174-256 189-289 (322)
90 PRK13582 thrH phosphoserine ph 98.1 7.5E-06 1.6E-10 72.2 7.8 82 174-259 76-171 (205)
91 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.0 3.5E-05 7.5E-10 67.9 8.7 84 174-259 95-198 (202)
92 PF08645 PNK3P: Polynucleotide 98.0 1.5E-05 3.4E-10 69.9 6.4 81 174-254 37-152 (159)
93 TIGR03333 salvage_mtnX 2-hydro 98.0 1.5E-05 3.3E-10 71.8 6.5 81 174-257 78-180 (214)
94 PTZ00445 p36-lilke protein; Pr 97.9 5.6E-05 1.2E-09 70.2 8.8 85 175-260 84-207 (219)
95 TIGR01489 DKMTPPase-SF 2,3-dik 97.9 6.5E-05 1.4E-09 64.7 8.5 75 174-252 80-183 (188)
96 KOG2914 Predicted haloacid-hal 97.8 0.00014 3E-09 67.7 9.7 84 175-259 101-197 (222)
97 KOG3109 Haloacid dehalogenase- 97.6 0.00022 4.8E-09 66.6 8.3 81 176-259 110-206 (244)
98 TIGR01511 ATPase-IB1_Cu copper 97.5 0.00023 5E-09 73.8 7.9 75 174-252 413-487 (562)
99 TIGR01525 ATPase-IB_hvy heavy 97.5 0.00031 6.7E-09 72.6 8.7 76 174-252 392-468 (556)
100 TIGR01512 ATPase-IB2_Cd heavy 97.5 0.00024 5.3E-09 73.2 7.5 80 174-257 370-450 (536)
101 TIGR01488 HAD-SF-IB Haloacid D 97.5 0.00031 6.8E-09 60.1 6.9 76 174-250 81-177 (177)
102 TIGR01544 HAD-SF-IE haloacid d 97.5 0.00049 1.1E-08 66.1 8.8 83 174-257 129-238 (277)
103 PRK08238 hypothetical protein; 97.4 0.00082 1.8E-08 68.9 10.4 83 174-260 80-167 (479)
104 TIGR02137 HSK-PSP phosphoserin 97.3 0.0011 2.4E-08 60.3 8.9 79 174-257 76-170 (203)
105 COG1778 Low specificity phosph 97.2 0.00073 1.6E-08 60.3 6.0 80 173-253 42-121 (170)
106 TIGR02251 HIF-SF_euk Dullard-l 97.2 0.00037 8.1E-09 61.1 3.9 98 174-277 50-156 (162)
107 PF05761 5_nucleotid: 5' nucle 97.1 0.0017 3.6E-08 66.3 8.2 129 124-260 147-326 (448)
108 PRK10671 copA copper exporting 97.1 0.0018 4E-08 70.1 8.7 80 174-257 658-737 (834)
109 PRK10530 pyridoxal phosphate ( 96.5 0.01 2.2E-07 54.5 8.0 75 176-252 147-236 (272)
110 PRK11033 zntA zinc/cadmium/mer 96.5 0.0095 2.1E-07 64.1 8.7 74 174-252 576-649 (741)
111 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.5 0.0096 2.1E-07 54.8 7.7 76 174-251 32-115 (242)
112 PF12689 Acid_PPase: Acid Phos 96.3 0.023 4.9E-07 51.0 8.7 83 174-259 53-152 (169)
113 TIGR01533 lipo_e_P4 5'-nucleot 95.9 0.025 5.3E-07 54.1 7.4 69 174-247 126-204 (266)
114 TIGR01522 ATPase-IIA2_Ca golgi 95.8 0.026 5.7E-07 61.8 8.0 75 174-252 536-638 (884)
115 TIGR02463 MPGP_rel mannosyl-3- 95.7 0.036 7.7E-07 49.7 7.2 59 193-253 150-217 (221)
116 PF12710 HAD: haloacid dehalog 95.7 0.025 5.4E-07 48.7 6.0 72 174-248 97-192 (192)
117 COG0560 SerB Phosphoserine pho 95.6 0.075 1.6E-06 48.8 9.1 85 174-260 85-188 (212)
118 PRK00192 mannosyl-3-phosphogly 95.4 0.072 1.6E-06 49.8 8.4 82 175-258 141-234 (273)
119 TIGR01482 SPP-subfamily Sucros 95.2 0.091 2E-06 46.8 8.0 64 191-255 116-189 (225)
120 PLN02645 phosphoglycolate phos 95.2 0.15 3.3E-06 49.0 9.9 83 172-255 50-135 (311)
121 TIGR01487 SPP-like sucrose-pho 94.8 0.11 2.3E-06 46.6 7.3 67 188-256 113-188 (215)
122 PRK01158 phosphoglycolate phos 94.8 0.13 2.8E-06 46.1 7.8 37 219-256 162-198 (230)
123 COG4087 Soluble P-type ATPase 94.1 0.45 9.7E-06 41.8 9.2 78 173-253 37-115 (152)
124 TIGR00685 T6PP trehalose-phosp 94.0 0.07 1.5E-06 49.3 4.5 39 219-258 172-217 (244)
125 TIGR01485 SPP_plant-cyano sucr 93.9 0.11 2.3E-06 47.9 5.5 46 212-258 164-210 (249)
126 TIGR01116 ATPase-IIA1_Ca sarco 93.6 0.2 4.4E-06 55.2 7.9 81 174-257 545-655 (917)
127 COG4229 Predicted enolase-phos 93.5 0.22 4.8E-06 46.0 6.6 83 174-258 111-204 (229)
128 COG5610 Predicted hydrolase (H 93.2 0.22 4.9E-06 51.4 6.7 83 175-257 108-201 (635)
129 COG2217 ZntA Cation transport 93.2 0.21 4.6E-06 53.9 6.9 71 173-246 544-614 (713)
130 TIGR01497 kdpB K+-transporting 93.0 0.42 9.1E-06 51.4 8.7 75 174-253 454-530 (675)
131 KOG1615 Phosphoserine phosphat 92.6 0.26 5.7E-06 45.8 5.8 71 175-249 97-191 (227)
132 TIGR01484 HAD-SF-IIB HAD-super 92.2 0.17 3.8E-06 44.6 4.0 40 214-254 162-202 (204)
133 TIGR01452 PGP_euk phosphoglyco 92.0 1.1 2.4E-05 42.2 9.4 94 155-254 8-107 (279)
134 PRK14010 potassium-transportin 91.5 0.73 1.6E-05 49.6 8.4 74 174-252 449-524 (673)
135 KOG0207 Cation transport ATPas 91.3 0.63 1.4E-05 51.4 7.7 70 172-244 729-798 (951)
136 TIGR02471 sucr_syn_bact_C sucr 91.0 0.29 6.2E-06 44.5 4.2 42 214-257 158-200 (236)
137 PRK01122 potassium-transportin 90.5 1.1 2.3E-05 48.3 8.5 74 174-252 453-528 (679)
138 TIGR01524 ATPase-IIIB_Mg magne 90.4 1 2.2E-05 49.7 8.4 74 174-252 523-623 (867)
139 COG2179 Predicted hydrolase of 90.1 0.6 1.3E-05 42.3 5.2 68 160-228 5-85 (175)
140 TIGR00099 Cof-subfamily Cof su 89.7 0.34 7.4E-06 44.4 3.6 37 219-256 193-229 (256)
141 PRK11590 hypothetical protein; 89.2 3.9 8.5E-05 36.8 10.0 86 174-261 103-205 (211)
142 TIGR01675 plant-AP plant acid 88.0 2.5 5.5E-05 39.8 8.1 82 175-260 129-225 (229)
143 TIGR01647 ATPase-IIIA_H plasma 87.6 1.8 3.9E-05 47.0 7.7 74 174-252 450-555 (755)
144 TIGR01517 ATPase-IIB_Ca plasma 87.5 2.3 5E-05 47.2 8.7 74 174-252 587-689 (941)
145 COG4359 Uncharacterized conser 87.4 2.2 4.8E-05 39.6 7.0 72 174-251 81-179 (220)
146 PRK10517 magnesium-transportin 87.3 2 4.2E-05 47.7 8.0 74 174-252 558-658 (902)
147 KOG1618 Predicted phosphatase 87.3 0.9 2E-05 45.2 4.8 65 197-261 253-344 (389)
148 PF13344 Hydrolase_6: Haloacid 87.3 3.6 7.7E-05 33.3 7.6 76 174-252 22-100 (101)
149 PRK15122 magnesium-transportin 87.1 1.9 4E-05 47.9 7.7 74 174-252 558-658 (903)
150 KOG2469 IMP-GMP specific 5'-nu 84.3 2.5 5.4E-05 43.1 6.3 97 174-270 206-345 (424)
151 PF08282 Hydrolase_3: haloacid 84.2 1.5 3.3E-05 38.5 4.4 37 219-257 191-227 (254)
152 PRK10976 putative hydrolase; P 83.8 1.2 2.5E-05 41.1 3.6 34 219-253 195-228 (266)
153 TIGR01486 HAD-SF-IIB-MPGP mann 83.7 1.4 3E-05 40.6 4.0 37 219-256 181-219 (256)
154 TIGR01684 viral_ppase viral ph 83.5 2.4 5.3E-05 41.5 5.8 87 152-245 129-226 (301)
155 TIGR01494 ATPase_P-type ATPase 83.5 5.1 0.00011 40.9 8.4 72 173-252 354-427 (499)
156 PRK10513 sugar phosphate phosp 83.1 1.3 2.9E-05 40.7 3.7 34 219-253 201-234 (270)
157 PHA03398 viral phosphatase sup 82.4 2.7 5.9E-05 41.2 5.7 55 152-206 131-188 (303)
158 PF06888 Put_Phosphatase: Puta 81.2 2.7 5.8E-05 39.6 5.0 78 175-253 80-191 (234)
159 COG4996 Predicted phosphatase 80.4 5.6 0.00012 35.2 6.3 67 174-240 49-126 (164)
160 TIGR01523 ATPase-IID_K-Na pota 80.0 6.6 0.00014 44.4 8.3 75 174-252 654-766 (1053)
161 TIGR01545 YfhB_g-proteo haloac 79.8 17 0.00036 33.1 9.6 85 174-260 102-203 (210)
162 TIGR01106 ATPase-IIC_X-K sodiu 77.5 8.6 0.00019 43.2 8.3 75 174-252 576-704 (997)
163 PF13344 Hydrolase_6: Haloacid 76.6 0.41 9E-06 38.8 -1.7 52 82-140 49-100 (101)
164 TIGR02463 MPGP_rel mannosyl-3- 76.6 5.9 0.00013 35.3 5.6 53 154-206 4-56 (221)
165 COG3700 AphA Acid phosphatase 76.3 9.8 0.00021 35.4 6.9 77 176-257 124-210 (237)
166 TIGR02461 osmo_MPG_phos mannos 74.8 3.4 7.5E-05 37.9 3.7 41 211-253 179-221 (225)
167 TIGR01487 SPP-like sucrose-pho 74.2 7.2 0.00016 34.8 5.5 54 153-206 5-58 (215)
168 PRK15126 thiamin pyrimidine py 74.1 2.9 6.2E-05 38.8 3.0 33 219-252 193-225 (272)
169 PF05116 S6PP: Sucrose-6F-phos 73.9 6 0.00013 36.9 5.1 54 205-261 157-210 (247)
170 PRK01158 phosphoglycolate phos 73.7 8.1 0.00018 34.4 5.7 54 153-206 7-60 (230)
171 PF03767 Acid_phosphat_B: HAD 73.4 8 0.00017 35.9 5.7 72 175-249 124-210 (229)
172 KOG2134 Polynucleotide kinase 71.3 9.3 0.0002 39.0 5.9 82 174-255 112-230 (422)
173 PRK00192 mannosyl-3-phosphogly 70.3 9.7 0.00021 35.5 5.6 54 153-206 8-61 (273)
174 PF04273 DUF442: Putative phos 69.9 15 0.00032 30.6 6.0 47 163-209 7-62 (110)
175 PRK12702 mannosyl-3-phosphogly 69.9 9.8 0.00021 37.4 5.6 54 153-206 5-58 (302)
176 PRK03669 mannosyl-3-phosphogly 69.3 11 0.00023 35.2 5.7 55 152-206 10-64 (271)
177 PF08282 Hydrolase_3: haloacid 69.2 8.8 0.00019 33.6 4.8 53 154-206 3-55 (254)
178 PRK15126 thiamin pyrimidine py 69.0 10 0.00022 35.1 5.4 54 153-206 6-59 (272)
179 COG3769 Predicted hydrolase (H 68.9 12 0.00026 35.8 5.8 52 154-206 12-63 (274)
180 TIGR00099 Cof-subfamily Cof su 68.7 12 0.00025 34.3 5.7 53 154-206 4-56 (256)
181 PRK10187 trehalose-6-phosphate 68.6 15 0.00033 34.6 6.6 39 219-258 179-220 (266)
182 CHL00162 thiG thiamin biosynth 68.4 1.2E+02 0.0026 29.5 13.8 136 134-279 92-238 (267)
183 TIGR01484 HAD-SF-IIB HAD-super 67.6 14 0.00029 32.5 5.7 56 153-208 3-59 (204)
184 PRK03669 mannosyl-3-phosphogly 66.1 7.5 0.00016 36.2 3.9 37 219-257 192-231 (271)
185 PRK10513 sugar phosphate phosp 65.3 14 0.00031 33.9 5.6 53 153-205 7-59 (270)
186 PRK10976 putative hydrolase; P 65.2 14 0.00031 33.8 5.6 54 153-206 6-59 (266)
187 TIGR01482 SPP-subfamily Sucros 64.8 14 0.00031 32.7 5.3 53 154-206 3-55 (225)
188 TIGR01457 HAD-SF-IIA-hyp2 HAD- 64.2 32 0.00069 31.9 7.7 102 157-259 9-144 (249)
189 TIGR01680 Veg_Stor_Prot vegeta 63.9 19 0.0004 35.0 6.2 86 175-263 154-255 (275)
190 TIGR02250 FCP1_euk FCP1-like p 63.3 29 0.00064 30.3 6.9 79 174-260 66-153 (156)
191 COG0761 lytB 4-Hydroxy-3-methy 63.0 8.6 0.00019 37.6 3.8 158 111-276 105-282 (294)
192 PLN02887 hydrolase family prot 62.2 8.3 0.00018 41.0 3.8 34 219-253 512-545 (580)
193 PRK10530 pyridoxal phosphate ( 60.9 17 0.00038 33.1 5.3 53 154-206 8-60 (272)
194 PRK01713 ornithine carbamoyltr 60.3 1.1E+02 0.0024 30.2 11.0 87 174-261 94-191 (334)
195 COG0561 Cof Predicted hydrolas 59.4 9.3 0.0002 35.1 3.2 36 219-255 194-229 (264)
196 COG0561 Cof Predicted hydrolas 59.4 20 0.00044 32.9 5.4 53 154-206 8-60 (264)
197 COG0647 NagD Predicted sugar p 59.4 43 0.00093 32.3 7.8 33 174-206 32-68 (269)
198 PRK00779 ornithine carbamoyltr 58.7 1.2E+02 0.0026 29.5 10.9 86 175-261 92-186 (304)
199 PLN02382 probable sucrose-phos 58.0 14 0.00031 37.3 4.5 39 219-258 180-221 (413)
200 TIGR01458 HAD-SF-IIA-hyp3 HAD- 57.6 41 0.0009 31.4 7.3 33 174-206 29-64 (257)
201 PF00072 Response_reg: Respons 57.4 83 0.0018 23.9 8.5 85 176-262 16-104 (112)
202 KOG3120 Predicted haloacid deh 57.2 15 0.00032 35.1 4.1 117 127-251 51-202 (256)
203 PRK14804 ornithine carbamoyltr 57.2 1.1E+02 0.0024 29.9 10.3 86 175-261 91-187 (311)
204 TIGR01460 HAD-SF-IIA Haloacid 57.1 54 0.0012 30.1 7.9 34 173-206 21-58 (236)
205 KOG2470 Similar to IMP-GMP spe 56.9 31 0.00067 35.2 6.5 82 175-258 249-375 (510)
206 PRK14805 ornithine carbamoyltr 56.6 1.5E+02 0.0033 28.8 11.2 86 175-261 87-181 (302)
207 TIGR02461 osmo_MPG_phos mannos 56.3 28 0.00061 31.9 5.8 52 154-206 4-55 (225)
208 PRK03515 ornithine carbamoyltr 55.4 1.5E+02 0.0032 29.4 11.0 86 175-261 94-191 (336)
209 COG2216 KdpB High-affinity K+ 54.3 31 0.00067 36.8 6.2 65 174-240 455-519 (681)
210 TIGR01486 HAD-SF-IIB-MPGP mann 52.3 35 0.00075 31.4 5.8 53 154-206 4-56 (256)
211 TIGR01657 P-ATPase-V P-type AT 52.0 57 0.0012 37.0 8.4 33 173-205 663-695 (1054)
212 PRK12562 ornithine carbamoyltr 50.9 2E+02 0.0044 28.5 11.1 86 175-261 94-191 (334)
213 PLN02342 ornithine carbamoyltr 49.7 2E+02 0.0043 28.8 10.9 86 175-261 134-228 (348)
214 COG0474 MgtA Cation transport 49.2 72 0.0016 35.7 8.5 77 174-254 555-661 (917)
215 PF05822 UMPH-1: Pyrimidine 5' 49.2 43 0.00094 32.0 5.9 121 126-260 58-209 (246)
216 PRK10444 UMP phosphatase; Prov 49.0 81 0.0017 29.5 7.7 33 174-206 25-60 (248)
217 PRK14502 bifunctional mannosyl 47.8 78 0.0017 34.6 8.2 82 125-206 376-473 (694)
218 PRK00856 pyrB aspartate carbam 47.6 2.5E+02 0.0055 27.4 11.1 88 174-261 93-192 (305)
219 PRK02255 putrescine carbamoylt 47.3 2.2E+02 0.0049 28.2 10.8 86 175-261 91-188 (338)
220 PRK04284 ornithine carbamoyltr 46.3 2.5E+02 0.0053 27.8 10.9 87 174-261 93-190 (332)
221 TIGR01652 ATPase-Plipid phosph 45.7 1.7E+02 0.0037 33.2 10.8 36 219-258 759-794 (1057)
222 PRK13587 1-(5-phosphoribosyl)- 45.1 2E+02 0.0043 26.8 9.6 120 113-240 91-224 (234)
223 PRK02083 imidazole glycerol ph 44.1 2.1E+02 0.0046 26.4 9.7 29 114-142 90-120 (253)
224 TIGR00007 phosphoribosylformim 43.8 2.5E+02 0.0053 25.4 10.0 95 113-209 87-194 (230)
225 TIGR02329 propionate_PrpR prop 43.6 1.4E+02 0.0031 31.3 9.3 91 175-276 90-184 (526)
226 TIGR00670 asp_carb_tr aspartat 43.0 3E+02 0.0065 26.8 10.8 86 175-261 89-186 (301)
227 PRK15424 propionate catabolism 42.6 2.2E+02 0.0047 30.2 10.4 92 175-276 100-194 (538)
228 PF04028 DUF374: Domain of unk 42.6 91 0.002 24.3 5.9 57 181-238 10-67 (74)
229 TIGR00658 orni_carb_tr ornithi 42.1 3.2E+02 0.0069 26.5 10.9 86 175-261 88-182 (304)
230 PLN02423 phosphomannomutase 42.1 32 0.0007 31.9 3.9 40 221-261 192-234 (245)
231 COG1209 RfbA dTDP-glucose pyro 42.0 84 0.0018 30.8 6.7 69 174-243 37-113 (286)
232 KOG0208 Cation transport ATPas 41.8 35 0.00075 38.8 4.6 82 168-252 649-744 (1140)
233 TIGR01668 YqeG_hyp_ppase HAD s 40.6 25 0.00054 30.7 2.7 28 160-187 2-29 (170)
234 PLN03190 aminophospholipid tra 40.1 2.3E+02 0.005 32.9 10.9 58 219-281 862-924 (1178)
235 TIGR01456 CECR5 HAD-superfamil 39.8 93 0.002 30.1 6.8 78 174-256 24-109 (321)
236 TIGR03609 S_layer_CsaB polysac 39.3 2.1E+02 0.0045 26.8 8.9 75 175-261 22-110 (298)
237 COG1568 Predicted methyltransf 38.4 39 0.00084 33.5 3.8 79 228-309 151-232 (354)
238 cd04732 HisA HisA. Phosphorib 38.3 2.6E+02 0.0057 25.1 9.2 19 114-132 89-107 (234)
239 cd04731 HisF The cyclase subun 38.1 3.2E+02 0.0068 25.0 9.8 31 231-261 194-227 (243)
240 KOG2630 Enolase-phosphatase E- 37.9 1.5E+02 0.0032 28.6 7.5 82 174-257 131-223 (254)
241 PF14597 Lactamase_B_5: Metall 36.6 40 0.00088 31.3 3.5 38 172-209 44-83 (199)
242 PF15342 FAM212: FAM212 family 35.6 22 0.00047 27.1 1.3 18 229-246 36-53 (62)
243 PLN02887 hydrolase family prot 34.6 73 0.0016 34.0 5.5 53 153-205 312-364 (580)
244 PF09269 DUF1967: Domain of un 34.2 34 0.00073 26.2 2.2 23 219-241 45-67 (69)
245 COG3882 FkbH Predicted enzyme 34.1 63 0.0014 34.2 4.8 83 175-261 264-355 (574)
246 PF11019 DUF2608: Protein of u 34.0 1.8E+02 0.0039 27.5 7.6 83 175-257 90-208 (252)
247 PLN02446 (5-phosphoribosyl)-5- 33.8 2.5E+02 0.0054 27.1 8.5 125 113-240 97-241 (262)
248 PF07213 DAP10: DAP10 membrane 33.7 20 0.00044 28.7 1.0 19 5-23 15-33 (79)
249 TIGR03595 Obg_CgtA_exten Obg f 32.7 48 0.001 25.4 2.8 23 219-241 45-67 (69)
250 smart00775 LNS2 LNS2 domain. T 31.5 3.5E+02 0.0075 23.5 10.8 87 174-261 35-152 (157)
251 PRK10841 hybrid sensory kinase 30.9 4.8E+02 0.01 29.2 11.3 84 176-262 819-906 (924)
252 PF00977 His_biosynth: Histidi 30.6 2.1E+02 0.0045 26.4 7.3 96 113-210 88-197 (229)
253 KOG0209 P-type ATPase [Inorgan 30.5 1.1E+02 0.0023 34.7 6.0 82 169-253 620-715 (1160)
254 KOG0202 Ca2+ transporting ATPa 30.1 1.7E+02 0.0037 33.0 7.4 73 175-251 593-697 (972)
255 PF02421 FeoB_N: Ferrous iron 30.0 1.5E+02 0.0031 26.2 5.8 41 175-215 98-146 (156)
256 PF06014 DUF910: Bacterial pro 30.0 25 0.00054 26.9 0.9 24 219-247 7-30 (62)
257 PF01861 DUF43: Protein of unk 29.5 90 0.002 29.9 4.7 94 212-309 24-123 (243)
258 COG2503 Predicted secreted aci 28.6 2E+02 0.0042 28.1 6.7 66 175-244 131-206 (274)
259 PRK05450 3-deoxy-manno-octulos 28.1 3.6E+02 0.0078 24.1 8.3 67 174-241 33-103 (245)
260 PRK10187 trehalose-6-phosphate 27.5 1.2E+02 0.0026 28.5 5.2 59 150-208 15-79 (266)
261 PF06506 PrpR_N: Propionate ca 27.5 1.1E+02 0.0024 26.9 4.6 81 175-259 70-151 (176)
262 PTZ00174 phosphomannomutase; P 27.5 1.1E+02 0.0024 28.1 4.9 49 153-201 9-57 (247)
263 COG1433 Uncharacterized conser 26.7 1.4E+02 0.0031 25.5 5.0 48 174-226 57-104 (121)
264 PF03031 NIF: NLI interacting 26.1 1.6E+02 0.0034 24.8 5.3 97 175-276 45-150 (159)
265 TIGR00735 hisF imidazoleglycer 26.0 5.4E+02 0.012 23.9 9.3 29 114-142 90-120 (254)
266 PRK10669 putative cation:proto 25.9 2E+02 0.0042 30.0 6.9 60 175-241 433-494 (558)
267 COG4030 Uncharacterized protei 25.7 76 0.0016 30.8 3.4 29 221-250 197-225 (315)
268 COG3453 Uncharacterized protei 25.7 3.1E+02 0.0066 24.0 6.8 60 168-227 14-87 (130)
269 PRK01033 imidazole glycerol ph 25.5 5.6E+02 0.012 24.0 9.4 17 116-132 92-108 (258)
270 PF06437 ISN1: IMP-specific 5' 25.5 50 0.0011 33.8 2.3 38 219-258 354-399 (408)
271 PRK14024 phosphoribosyl isomer 24.9 4.5E+02 0.0097 24.3 8.4 30 113-142 90-121 (241)
272 COG0745 OmpR Response regulato 24.8 4.9E+02 0.011 24.1 8.6 85 176-263 18-106 (229)
273 PRK06381 threonine synthase; V 24.5 3.1E+02 0.0066 26.2 7.5 64 175-241 55-120 (319)
274 PRK11891 aspartate carbamoyltr 24.4 5.7E+02 0.012 26.4 9.7 85 176-261 177-278 (429)
275 TIGR01658 EYA-cons_domain eyes 24.3 4E+02 0.0087 26.0 8.0 41 219-260 219-259 (274)
276 PRK02261 methylaspartate mutas 24.2 4.5E+02 0.0098 22.4 8.1 83 176-259 25-120 (137)
277 PRK15480 glucose-1-phosphate t 24.2 2.6E+02 0.0055 26.9 6.9 68 174-242 40-115 (292)
278 PRK11840 bifunctional sulfur c 23.9 7.4E+02 0.016 24.8 10.3 97 176-279 191-298 (326)
279 PRK01045 ispH 4-hydroxy-3-meth 23.8 3E+02 0.0064 27.0 7.2 63 175-239 46-122 (298)
280 PLN02527 aspartate carbamoyltr 23.1 7.1E+02 0.015 24.2 11.0 86 175-261 90-188 (306)
281 cd01977 Nitrogenase_VFe_alpha 23.0 5.8E+02 0.013 25.5 9.4 95 181-278 287-403 (415)
282 TIGR02370 pyl_corrinoid methyl 22.8 5.3E+02 0.011 23.2 8.3 80 176-256 106-191 (197)
283 COG1212 KdsB CMP-2-keto-3-deox 22.3 3.9E+02 0.0084 25.8 7.4 65 175-241 35-104 (247)
284 PRK03659 glutathione-regulated 21.9 2.4E+02 0.0052 29.9 6.7 31 176-208 417-447 (601)
285 PLN02331 phosphoribosylglycina 21.9 3.6E+02 0.0078 24.8 7.1 13 175-187 42-54 (207)
286 PF14097 SpoVAE: Stage V sporu 21.3 2.6E+02 0.0057 25.6 5.8 57 184-240 1-63 (180)
287 PLN02617 imidazole glycerol ph 21.2 4.4E+02 0.0095 28.0 8.4 112 113-227 340-505 (538)
288 PRK03562 glutathione-regulated 21.2 2.5E+02 0.0055 29.9 6.7 23 176-199 417-439 (621)
289 TIGR01284 alt_nitrog_alph nitr 20.7 8E+02 0.017 25.1 10.0 56 181-239 324-382 (457)
290 TIGR02708 L_lactate_ox L-lacta 20.2 3.5E+02 0.0077 27.3 7.1 84 173-258 218-312 (367)
No 1
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=216.75 Aligned_cols=140 Identities=30% Similarity=0.464 Sum_probs=124.5
Q ss_pred eeeeeccCCcccCcccc-CCcchhhH-HHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH-HHHHHHHhC
Q 020934 151 TVVFAKDRHLALPHVTV-PDIRYIDW-AELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFG 227 (319)
Q Consensus 151 a~vL~rd~~l~~P~~~v-~~i~~i~l-~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk~lg 227 (319)
..+++.|++| .|+..- ....-++| ++++++|+++.|+|||...+++.+++.+|+++|+ .|+||.+. |.+|+++|+
T Consensus 30 gvi~DlDNTL-v~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~-~A~KP~~~~fr~Al~~m~ 107 (175)
T COG2179 30 GVILDLDNTL-VPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIY-RAKKPFGRAFRRALKEMN 107 (175)
T ss_pred EEEEeccCce-ecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceee-cccCccHHHHHHHHHHcC
Confidence 3556888887 666555 44545565 9999999999999999999999999999999985 79999996 999999999
Q ss_pred CCCCceEEEcCCchhhHHhHHHcCCeEEEEccCcCCCchhHHHHHHHHHHHHHHHHHhc-CCCCCCC
Q 020934 228 CQSSQLIMVGDRPFTDIVYGNRNGFLTILTEPLSLAEEPFIVRQVRKLEVTIVNRWFRR-GLKPISH 293 (319)
Q Consensus 228 v~p~e~vmVGDrl~TDIlgAn~aGm~TILV~Pi~~~~e~~~trl~R~lEr~il~~l~~k-g~~~~~~ 293 (319)
++++|++|||||++|||+|||++||.||+|.|+... ++|.|+++|++|+.+++++.++ |..-|++
T Consensus 108 l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~-d~~~t~~nR~~Er~v~~~l~~k~g~i~~k~ 173 (175)
T COG2179 108 LPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLVAP-DGWITKINRWRERRVLKKLGKKYGPIHWKE 173 (175)
T ss_pred CChhHEEEEcchhhhhhhcccccCcEEEEEEEeccc-cchhhhhhHHHHHHHHHHHHHhcCCccccc
Confidence 999999999999999999999999999999999976 6799999999999999998886 8777664
No 2
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.84 E-value=2.8e-21 Score=171.65 Aligned_cols=106 Identities=43% Similarity=0.740 Sum_probs=86.9
Q ss_pred eeccCCcccCccccCCcchhhHHH--HHHcCCcE-------------------------------------EEEecC---
Q 020934 154 FAKDRHLALPHVTVPDIRYIDWAE--LQRRGFKG-------------------------------------LYEYDN--- 191 (319)
Q Consensus 154 L~rd~~l~~P~~~v~~i~~i~l~~--Lke~Gikl-------------------------------------~I~SNn--- 191 (319)
+++++.++.|+.+++++.+|+|+. |++.||++ +|+||+
T Consensus 10 ~~~~p~l~~P~l~V~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs 89 (168)
T PF09419_consen 10 LLRNPSLLLPHLYVPSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGS 89 (168)
T ss_pred HHcCccccCCCEEcCChhhCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 355777777777777777777777 77777776 678887
Q ss_pred ----CHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCC-----CCCceEEEcCCchhhHHhHHHcCCeEEEEc-cC
Q 020934 192 ----DASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGC-----QSSQLIMVGDRPFTDIVYGNRNGFLTILTE-PL 260 (319)
Q Consensus 192 ----~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv-----~p~e~vmVGDrl~TDIlgAn~aGm~TILV~-Pi 260 (319)
++.+++.+++.+||+++.+.++||.+ +.++++.++. +|+|++|||||++|||++||++|++||||+ |+
T Consensus 90 ~~d~~~~~a~~~~~~lgIpvl~h~~kKP~~-~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 90 SDDPDGERAEALEKALGIPVLRHRAKKPGC-FREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred ccCccHHHHHHHHHhhCCcEEEeCCCCCcc-HHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 36788999999999999889999943 6677777765 499999999999999999999999999995 54
No 3
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.80 E-value=1.9e-19 Score=157.79 Aligned_cols=140 Identities=61% Similarity=0.937 Sum_probs=116.3
Q ss_pred cccccccceeeeeeeeccCCcccCccccCCcchhhHHHHHHcCCcEE---------------------------------
Q 020934 140 QRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGL--------------------------------- 186 (319)
Q Consensus 140 ~~~n~~gI~~~a~vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~--------------------------------- 186 (319)
+.+|++||..+..+ .+++++..|+..+++..+|+|+-++..||+.+
T Consensus 1 ~~iNIeGi~~~~~~-v~npr~~~Ph~~vptf~~ip~~I~~~~~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vyge 79 (190)
T KOG2961|consen 1 QRINIEGIVSSVSV-VVNPRFVLPHVSVPTFRYIPWEILKRKGIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGE 79 (190)
T ss_pred CceehHHhhhhhee-eeCcceeccccccCccccCCcchhhccCceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCc
Confidence 35688888766554 45888899999999999999999999999873
Q ss_pred ----EEecC--------CHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhC----CCCCceEEEcCCchhhHHhHHHc
Q 020934 187 ----YEYDN--------DASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFG----CQSSQLIMVGDRPFTDIVYGNRN 250 (319)
Q Consensus 187 ----I~SNn--------~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lg----v~p~e~vmVGDrl~TDIlgAn~a 250 (319)
+.||. +++.++.++.+.||+++.|+.+||...-+..-..+| +.++|++|||||+||||..||++
T Consensus 80 k~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~m 159 (190)
T KOG2961|consen 80 KDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRM 159 (190)
T ss_pred ccEEEEecCcCccccCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhc
Confidence 33332 456788899999999999999999986554555667 88999999999999999999999
Q ss_pred CCeEEEEccCcCCCchhHHHHHHHHHHHHH
Q 020934 251 GFLTILTEPLSLAEEPFIVRQVRKLEVTIV 280 (319)
Q Consensus 251 Gm~TILV~Pi~~~~e~~~trl~R~lEr~il 280 (319)
|..++|++|....++.+..++.|++|..++
T Consensus 160 Gs~gVw~~~gv~~~~n~i~~~~~~l~~~l~ 189 (190)
T KOG2961|consen 160 GSLGVWTEPGVRAEENFIVRQVRRLELALL 189 (190)
T ss_pred cceeEEecccccccchHHHHHHHHHHHHhh
Confidence 999999998888888998888999987653
No 4
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.75 E-value=2e-17 Score=145.19 Aligned_cols=138 Identities=36% Similarity=0.488 Sum_probs=109.8
Q ss_pred eeeeccCCcccCcccc--CCcchhhHHHHHHcCCcEEEEecCC-HHHHHHHHHHhCCcEEEccCCCChHH-HHHHHHHhC
Q 020934 152 VVFAKDRHLALPHVTV--PDIRYIDWAELQRRGFKGLYEYDND-ASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFG 227 (319)
Q Consensus 152 ~vL~rd~~l~~P~~~v--~~i~~i~l~~Lke~Gikl~I~SNn~-~~~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk~lg 227 (319)
.+++.|.++..++... +.+ ...++.|++.|++++++||+. ...++.+.+.+|+.++. ...||.+. +..+++++|
T Consensus 28 vv~D~Dgtl~~~~~~~~~pgv-~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~-~~~KP~p~~~~~~l~~~~ 105 (170)
T TIGR01668 28 VVLDKDNTLVYPDHNEAYPAL-RDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLP-HAVKPPGCAFRRAHPEMG 105 (170)
T ss_pred EEEecCCccccCCCCCcChhH-HHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEc-CCCCCChHHHHHHHHHcC
Confidence 3345566665444322 222 224899999999999999998 67778888889997653 45799997 889999999
Q ss_pred CCCCceEEEcCCchhhHHhHHHcCCeEEEEccCcCCCchhHHHHHHHHHHHHHHHHHhcCCCCC
Q 020934 228 CQSSQLIMVGDRPFTDIVYGNRNGFLTILTEPLSLAEEPFIVRQVRKLEVTIVNRWFRRGLKPI 291 (319)
Q Consensus 228 v~p~e~vmVGDrl~TDIlgAn~aGm~TILV~Pi~~~~e~~~trl~R~lEr~il~~l~~kg~~~~ 291 (319)
+++++++||||++.+||.+|+++||.+|+|.+-....+.+.+.+.|.+|+.+...+.++|...+
T Consensus 106 ~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (170)
T TIGR01668 106 LTSEQVAVVGDRLFTDVMGGNRNGSYTILVEPLVHPDQWFIKRIWRRVERTVLKFLVSRGGPAP 169 (170)
T ss_pred CCHHHEEEECCcchHHHHHHHHcCCeEEEEccCcCCccccchhhHHHHHHHHHHHhccccCCCC
Confidence 9999999999999899999999999999998666666778888899999988777766665543
No 5
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.56 E-value=5.8e-15 Score=139.98 Aligned_cols=167 Identities=20% Similarity=0.154 Sum_probs=120.9
Q ss_pred ccccc-cccccCCCCCcCCCCCccccccccccccccCCCCCceeEehhHHHHHHHHHHccccccccce--eeeeeeeccC
Q 020934 82 NHTFL-DQFYSSADTNKLGNQDPESQNQEQDEEPRYNKDKYWTVLCTNMWWSQLKAALGQRINVEGIV--SSTVVFAKDR 158 (319)
Q Consensus 82 ~~~~~-~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~g~~~liiG~~WW~~l~~~lg~~~n~~gI~--~~a~vL~rd~ 158 (319)
.+|.. .|.++.++++.||.++...+ +++..+. .++.++|..-..+..+.+|.....+.-. ..++++..|.
T Consensus 59 ~~L~~~~~~~~~~~~i~TS~~at~~~------l~~~~~~-~kv~viG~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~ 131 (269)
T COG0647 59 ARLSSLGGVDVTPDDIVTSGDATADY------LAKQKPG-KKVYVIGEEGLKEELEGAGFELVDEEEPARVDAVVVGLDR 131 (269)
T ss_pred HHHHhhcCCCCCHHHeecHHHHHHHH------HHhhCCC-CEEEEECCcchHHHHHhCCcEEeccCCCCcccEEEEecCC
Confidence 38888 56689999999999999999 5555444 8999999999999999888664432222 2445555553
Q ss_pred CcccCccccCCcchhhHHHHHHcCCcEEEEecCC-------------HHHHHHHHHHhCCcEEEccCCCChHH-HHHHHH
Q 020934 159 HLALPHVTVPDIRYIDWAELQRRGFKGLYEYDND-------------ASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEK 224 (319)
Q Consensus 159 ~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~-------------~~~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk 224 (319)
...+.. ....+..+ .+|. -+|.+|.+ |..+..+....|...+ ..+||.+. ++.|++
T Consensus 132 ~~~~e~------l~~a~~~i-~~g~-~fI~tNpD~~~p~~~g~~pgaGai~~~~~~~tg~~~~--~~GKP~~~i~~~al~ 201 (269)
T COG0647 132 TLTYEK------LAEALLAI-AAGA-PFIATNPDLTVPTERGLRPGAGAIAALLEQATGREPT--VIGKPSPAIYEAALE 201 (269)
T ss_pred CCCHHH------HHHHHHHH-HcCC-cEEEeCCCccccCCCCCccCcHHHHHHHHHhhCCccc--ccCCCCHHHHHHHHH
Confidence 321111 01122332 3453 36778763 3445666666677663 38899997 889999
Q ss_pred HhCCCCCceEEEcCCchhhHHhHHHcCCeEEEE-ccCcCCCc
Q 020934 225 HFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT-EPLSLAEE 265 (319)
Q Consensus 225 ~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV-~Pi~~~~e 265 (319)
.++.++++++||||++.|||.+|+++||.|+|| ++++..++
T Consensus 202 ~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~ 243 (269)
T COG0647 202 KLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAED 243 (269)
T ss_pred HhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhh
Confidence 999999999999999999999999999999999 58875543
No 6
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.53 E-value=3.9e-14 Score=132.92 Aligned_cols=165 Identities=21% Similarity=0.177 Sum_probs=114.2
Q ss_pred ccccccccccCCCCCcCCCCCccccccccccccccCCCCCceeEehhHHHHHHHHHHcccccccc---------------
Q 020934 82 NHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRYNKDKYWTVLCTNMWWSQLKAALGQRINVEG--------------- 146 (319)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~g~~~liiG~~WW~~l~~~lg~~~n~~g--------------- 146 (319)
.+|..+||...++++.||..+.... +++....+.++.++|..-..+..+..|.......
T Consensus 53 ~~l~~~G~~~~~~~i~ts~~~~~~~------l~~~~~~~~~v~~iG~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 126 (279)
T TIGR01452 53 LKFARLGFNGLAEQLFSSALCAARL------LRQPPDAPKAVYVIGEEGLRAELDAAGIRLAGDPSAGDGAAPRGSGAFM 126 (279)
T ss_pred HHHHHcCCCCChhhEecHHHHHHHH------HHhhCcCCCEEEEEcCHHHHHHHHHCCCEEecCcccccccchhhccccc
Confidence 3788899999999999999998877 5554344678999999888777776665532110
Q ss_pred ---ceeeeeeeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHH--------------HHHHHHHhCCcEEE
Q 020934 147 ---IVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASK--------------ARKLEGKIGIKVIR 209 (319)
Q Consensus 147 ---I~~~a~vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~--------------v~~l~~~lGI~~I~ 209 (319)
-..-++++..+..+.+|.. ...++.|+++|+ ++|+||++... +..+....|...+
T Consensus 127 ~~~~~~~~Vvv~~d~~~~y~~i------~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~- 198 (279)
T TIGR01452 127 KLEENVGAVVVGYDEHFSYAKL------REACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPL- 198 (279)
T ss_pred ccCCCCCEEEEecCCCCCHHHH------HHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCcee-
Confidence 0112233333322211111 124688888887 67888875311 1222223354443
Q ss_pred ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEc-cCc
Q 020934 210 HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE-PLS 261 (319)
Q Consensus 210 ~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~-Pi~ 261 (319)
..+||.+. +..+++++|++|++++||||++.|||.+|+++||.+|+|. ++.
T Consensus 199 -~~gKP~p~~~~~~~~~~~~~~~~~lmIGD~~~tDI~~A~~aGi~si~V~~G~~ 251 (279)
T TIGR01452 199 -VVGKPSPYMFECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLVLSGVS 251 (279)
T ss_pred -ccCCCCHHHHHHHHHHhCCChhhEEEECCChHHHHHHHHHcCCcEEEECCCCC
Confidence 36799997 8899999999999999999999899999999999999994 444
No 7
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.50 E-value=1.7e-13 Score=113.76 Aligned_cols=86 Identities=24% Similarity=0.394 Sum_probs=74.5
Q ss_pred hHHHHHHcCCcEEEEecCC--------HHHHHHHHHHhCCcEE----EccCCCChHH-HHHHHHHh-CCCCCceEEEcCC
Q 020934 174 DWAELQRRGFKGLYEYDND--------ASKARKLEGKIGIKVI----RHRVKKPAGT-AEEIEKHF-GCQSSQLIMVGDR 239 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~--------~~~v~~l~~~lGI~~I----~~~akKP~~~-f~~ALk~l-gv~p~e~vmVGDr 239 (319)
.++.|+++|++++++||+. ...++.+++.+|+.+. .....||.+. +..+++++ +++|++++||||+
T Consensus 33 ~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~ 112 (132)
T TIGR01662 33 ALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQ 112 (132)
T ss_pred HHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCC
Confidence 5799999999999999988 6677888899998732 1235799997 88999999 5999999999997
Q ss_pred chhhHHhHHHcCCeEEEEcc
Q 020934 240 PFTDIVYGNRNGFLTILTEP 259 (319)
Q Consensus 240 l~TDIlgAn~aGm~TILV~P 259 (319)
..+||.+|+++|+.+|||+|
T Consensus 113 ~~~Di~~A~~~Gi~~i~~~~ 132 (132)
T TIGR01662 113 DLTDLQAAKRAGLAFILVAP 132 (132)
T ss_pred CcccHHHHHHCCCeEEEeeC
Confidence 66999999999999999986
No 8
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.48 E-value=5.4e-14 Score=131.21 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=95.5
Q ss_pred EehhHHHHHHHHHHccccccccceeee----eeeeccCCcc--cCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHH
Q 020934 125 LCTNMWWSQLKAALGQRINVEGIVSST----VVFAKDRHLA--LPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARK 198 (319)
Q Consensus 125 iiG~~WW~~l~~~lg~~~n~~gI~~~a----~vL~rd~~l~--~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~ 198 (319)
+...+||..++. .+|+..+..... .+.++.++.. .++.+... ....+..||++|+.++++| |...+.+.
T Consensus 70 l~~~~ww~~lv~---~~f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~lq~lR~~g~~l~iis-N~d~r~~~ 144 (237)
T KOG3085|consen 70 LTLSQWWPKLVE---STFGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDG-MQELLQKLRKKGTILGIIS-NFDDRLRL 144 (237)
T ss_pred ccHHHHHHHHHH---HHhccccchhHHHHHhhhhhheeccccccCceeccH-HHHHHHHHHhCCeEEEEec-CCcHHHHH
Confidence 488999998888 666665553211 1112222222 24444433 3467899999998888886 55577777
Q ss_pred HHHHhCCc----EE----EccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 199 LEGKIGIK----VI----RHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 199 l~~~lGI~----~I----~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
++..+|+. .+ ..+..||+|. |+.|++++|++|++|++|||.+.+|+.||+++||.+++|.
T Consensus 145 ~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~ 213 (237)
T KOG3085|consen 145 LLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVD 213 (237)
T ss_pred HhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEc
Confidence 77777773 11 1478999998 8999999999999999999999999999999999999996
No 9
>PRK10444 UMP phosphatase; Provisional
Probab=99.43 E-value=3.5e-13 Score=125.63 Aligned_cols=151 Identities=19% Similarity=0.162 Sum_probs=108.8
Q ss_pred ccccccccccCCCCCcCCCCCccccccccccccccCCCCCceeEehhHHHHHHHHHHccccccccceeeeeeeeccCCcc
Q 020934 82 NHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRYNKDKYWTVLCTNMWWSQLKAALGQRINVEGIVSSTVVFAKDRHLA 161 (319)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~g~~~liiG~~WW~~l~~~lg~~~n~~gI~~~a~vL~rd~~l~ 161 (319)
.+|..+||..+.+++.||.++.... +++. .+.++.++|.....+..+..|.... .....++++..+.
T Consensus 52 ~~l~~~G~~~~~~~i~ts~~~~~~~------L~~~--~~~~v~~~g~~~l~~~l~~~g~~~~--~~~~~~Vvvg~~~--- 118 (248)
T PRK10444 52 NRFATAGVDVPDSVFYTSAMATADF------LRRQ--EGKKAYVIGEGALIHELYKAGFTIT--DINPDFVIVGETR--- 118 (248)
T ss_pred HHHHHcCCCCCHhhEecHHHHHHHH------HHhC--CCCEEEEEcCHHHHHHHHHCcCEec--CCCCCEEEEeCCC---
Confidence 4888999999999999999999888 5554 3567888999877766665554422 1122234444332
Q ss_pred cCccccCCcchhhHHHHH------HcCCcEEEEecCC----------HHHHHHHHHHhCCcEEEccCCCChHH-HHHHHH
Q 020934 162 LPHVTVPDIRYIDWAELQ------RRGFKGLYEYDND----------ASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEK 224 (319)
Q Consensus 162 ~P~~~v~~i~~i~l~~Lk------e~Gikl~I~SNn~----------~~~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk 224 (319)
..+++.|. ++|.+ ++++|.+ +..+..+....|...+. .+||.+. +..+++
T Consensus 119 ----------~~~~~~l~~a~~~l~~g~~-~i~~n~D~~~~g~~~~~G~~~~~l~~~~g~~~~~--~gKP~~~~~~~~~~ 185 (248)
T PRK10444 119 ----------SYNWDMMHKAAYFVANGAR-FIATNPDTHGRGFYPACGALCAGIEKISGRKPFY--VGKPSPWIIRAALN 185 (248)
T ss_pred ----------CCCHHHHHHHHHHHHCCCE-EEEECCCCCCCCCcCcHHHHHHHHHHHhCCCccc--cCCCCHHHHHHHHH
Confidence 12222222 34654 5677753 33455666667776542 5699998 889999
Q ss_pred HhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 225 HFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 225 ~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
++++++++++||||++.|||.+|+++|+.+++|.
T Consensus 186 ~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~ 219 (248)
T PRK10444 186 KMQAHSEETVIVGDNLRTDILAGFQAGLETILVL 219 (248)
T ss_pred HcCCCcccEEEECCCcHHHHHHHHHcCCCEEEEC
Confidence 9999999999999999999999999999999994
No 10
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.42 E-value=1.3e-12 Score=115.16 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=76.9
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++++||.....++.+++.+|+. .+. .+..||.+. |..+++++|++|++++||||+. +||
T Consensus 100 ~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~vgD~~-~Di 178 (198)
T TIGR01428 100 GLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFVASNP-WDL 178 (198)
T ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEEeCCH-HHH
Confidence 589999999999999999988888888888984 221 357899998 8999999999999999999999 899
Q ss_pred HhHHHcCCeEEEEccCc
Q 020934 245 VYGNRNGFLTILTEPLS 261 (319)
Q Consensus 245 lgAn~aGm~TILV~Pi~ 261 (319)
.+|+++||.+|||.+-.
T Consensus 179 ~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 179 GGAKKFGFKTAWVNRPG 195 (198)
T ss_pred HHHHHCCCcEEEecCCC
Confidence 99999999999998644
No 11
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.41 E-value=1.7e-12 Score=113.81 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=78.5
Q ss_pred eeeeccCCcccCccccCCcc--------hhhHHHHHHcCCcEEEEecCCH---------------HHHHHHHHHhCCc--
Q 020934 152 VVFAKDRHLALPHVTVPDIR--------YIDWAELQRRGFKGLYEYDNDA---------------SKARKLEGKIGIK-- 206 (319)
Q Consensus 152 ~vL~rd~~l~~P~~~v~~i~--------~i~l~~Lke~Gikl~I~SNn~~---------------~~v~~l~~~lGI~-- 206 (319)
..+++|+++..+..++.... ...++.|+++|++++|+||+.. ..+..+++.+|+.
T Consensus 4 ~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (176)
T TIGR00213 4 IFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLD 83 (176)
T ss_pred EEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 45678888765433222211 1247999999999999999874 1223455566554
Q ss_pred EEE---------------ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeE-EEEc
Q 020934 207 VIR---------------HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLT-ILTE 258 (319)
Q Consensus 207 ~I~---------------~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~T-ILV~ 258 (319)
.+. ....||.|. +..+++++|++|++++||||+. +||.+|+++|+.+ |+|.
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~-~Di~aA~~aG~~~~i~v~ 151 (176)
T TIGR00213 84 GIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKL-EDMQAGVAAKVKTNVLVR 151 (176)
T ss_pred EEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCH-HHHHHHHHCCCcEEEEEe
Confidence 221 125799998 8999999999999999999997 8999999999998 7885
No 12
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.41 E-value=1.2e-12 Score=116.55 Aligned_cols=87 Identities=20% Similarity=0.225 Sum_probs=74.1
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc------EEE--ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK------VIR--HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~------~I~--~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+.+ ++++++||.........++.+|+. +++ .+..||++. |..+++++|++|++++||||++.+||
T Consensus 107 ~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~VgD~~~~di 185 (229)
T COG1011 107 ALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFVGDSLENDI 185 (229)
T ss_pred HHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEEECCChhhhh
Confidence 46777777 889999987777777777888874 122 467899998 89999999999999999999999999
Q ss_pred HhHHHcCCeEEEEccCc
Q 020934 245 VYGNRNGFLTILTEPLS 261 (319)
Q Consensus 245 lgAn~aGm~TILV~Pi~ 261 (319)
.||+++||.+||+..-.
T Consensus 186 ~gA~~~G~~~vwi~~~~ 202 (229)
T COG1011 186 LGARALGMKTVWINRGG 202 (229)
T ss_pred HHHHhcCcEEEEECCCC
Confidence 99999999999997443
No 13
>PRK06769 hypothetical protein; Validated
Probab=99.39 E-value=2.6e-12 Score=113.18 Aligned_cols=85 Identities=21% Similarity=0.199 Sum_probs=70.0
Q ss_pred hHHHHHHcCCcEEEEecCCHH--------HHHHHHHHhCCcEEE-c--------cCCCChHH-HHHHHHHhCCCCCceEE
Q 020934 174 DWAELQRRGFKGLYEYDNDAS--------KARKLEGKIGIKVIR-H--------RVKKPAGT-AEEIEKHFGCQSSQLIM 235 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~--------~v~~l~~~lGI~~I~-~--------~akKP~~~-f~~ALk~lgv~p~e~vm 235 (319)
.+++|+++|++++|+||+... .+...++.+|+..+. . ...||.|. +.+++++++++|++++|
T Consensus 36 ~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~ 115 (173)
T PRK06769 36 SLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAV 115 (173)
T ss_pred HHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEE
Confidence 579999999999999988641 122335677886321 1 35799998 89999999999999999
Q ss_pred EcCCchhhHHhHHHcCCeEEEEcc
Q 020934 236 VGDRPFTDIVYGNRNGFLTILTEP 259 (319)
Q Consensus 236 VGDrl~TDIlgAn~aGm~TILV~P 259 (319)
|||+. +||.+|+++||.+|+|..
T Consensus 116 IGD~~-~Di~aA~~aGi~~i~v~~ 138 (173)
T PRK06769 116 IGDRW-TDIVAAAKVNATTILVRT 138 (173)
T ss_pred EcCCH-HHHHHHHHCCCeEEEEec
Confidence 99997 899999999999999974
No 14
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.38 E-value=2e-12 Score=119.94 Aligned_cols=157 Identities=20% Similarity=0.188 Sum_probs=109.9
Q ss_pred cccccccccCCCCCcCCCCCccccccccccccccCCCCCceeEehhHHHHHHHHHHccccccccceeeeeeeeccCCccc
Q 020934 83 HTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRYNKDKYWTVLCTNMWWSQLKAALGQRINVEGIVSSTVVFAKDRHLAL 162 (319)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~g~~~liiG~~WW~~l~~~lg~~~n~~gI~~~a~vL~rd~~l~~ 162 (319)
.|..+|+....+++.||+++.... +.+. ..+.++.++|..-.....+..|........ .++++..+....+
T Consensus 53 ~l~~~g~~~~~~~iit~~~~~~~~------l~~~-~~~~~v~~lg~~~l~~~l~~~g~~~~~~~~--~~Vvvg~~~~~~y 123 (249)
T TIGR01457 53 MLASFDIPATLETVFTASMATADY------MNDL-KLEKTVYVIGEEGLKEAIKEAGYVEDKEKP--DYVVVGLDRQIDY 123 (249)
T ss_pred HHHHcCCCCChhhEeeHHHHHHHH------HHhc-CCCCEEEEEcChhHHHHHHHcCCEecCCCC--CEEEEeCCCCCCH
Confidence 788899999999999999999887 4443 346789999998877777766654322221 2333333311111
Q ss_pred CccccCCcchhhHHHHHHcCCcEEEEecCC-------------HHHHHHHHHHhCCcEEEccCCCChHH-HHHHHHHhCC
Q 020934 163 PHVTVPDIRYIDWAELQRRGFKGLYEYDND-------------ASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGC 228 (319)
Q Consensus 163 P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~-------------~~~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk~lgv 228 (319)
+.. ...+..| ++|.+ ++++|.+ +..+..+....|...+ ..+||.+. ++.+++++++
T Consensus 124 ~~l------~~a~~~l-~~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~--~~gKP~~~~~~~~~~~~~~ 193 (249)
T TIGR01457 124 EKF------ATATLAI-RKGAH-FIGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPV--YIGKPNAIIMEKAVEHLGT 193 (249)
T ss_pred HHH------HHHHHHH-HCCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCcc--ccCCChHHHHHHHHHHcCC
Confidence 110 0123344 45777 6677753 2234455555677655 35799998 8899999999
Q ss_pred CCCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 229 QSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 229 ~p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
++++++||||++.+||.+|+++||.+|||.
T Consensus 194 ~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~ 223 (249)
T TIGR01457 194 EREETLMVGDNYLTDIRAGIDAGIDTLLVH 223 (249)
T ss_pred CcccEEEECCCchhhHHHHHHcCCcEEEEc
Confidence 999999999999899999999999999995
No 15
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.37 E-value=2.2e-12 Score=113.87 Aligned_cols=131 Identities=19% Similarity=0.215 Sum_probs=88.1
Q ss_pred eEehhHHHHHHHHHHcccccccc---ceeeeeeeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHH
Q 020934 124 VLCTNMWWSQLKAALGQRINVEG---IVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLE 200 (319)
Q Consensus 124 liiG~~WW~~l~~~lg~~~n~~g---I~~~a~vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~ 200 (319)
++...+||..+.+.+...++... +......++.......+...++++ ...++.|+++|++++|+||... .+...+
T Consensus 61 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~~L~~~g~~~~i~Sn~~~-~~~~~l 138 (203)
T TIGR02252 61 GLTPQQWWQKLVRDTFGRAGVPDPESFEKIFEELYSYFATPEPWQVYPDA-IKLLKDLRERGLILGVISNFDS-RLRGLL 138 (203)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhcCCCcceeCcCH-HHHHHHHHHCCCEEEEEeCCch-hHHHHH
Confidence 55667788888776544443211 111111111111000111222332 2357999999999999998764 346667
Q ss_pred HHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEE
Q 020934 201 GKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTIL 256 (319)
Q Consensus 201 ~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TIL 256 (319)
+.+|+. .+. .+..||.|. |.++++++|++|++++||||++.+||.+|+++||.+||
T Consensus 139 ~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 139 EALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred HHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 788874 221 356799997 88999999999999999999987899999999999986
No 16
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.36 E-value=3.8e-12 Score=113.35 Aligned_cols=86 Identities=23% Similarity=0.296 Sum_probs=75.2
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++|+||+....+...++.+|+. .+. .+..||++. +..+++++|++|++++||||++.+||
T Consensus 102 ~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~igDs~~~di 181 (221)
T TIGR02253 102 TLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMVGDRLDKDI 181 (221)
T ss_pred HHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEECCChHHHH
Confidence 589999999999999999877777777888874 221 356799997 89999999999999999999987899
Q ss_pred HhHHHcCCeEEEEcc
Q 020934 245 VYGNRNGFLTILTEP 259 (319)
Q Consensus 245 lgAn~aGm~TILV~P 259 (319)
.+|+++|+.+|+|..
T Consensus 182 ~~A~~aG~~~i~~~~ 196 (221)
T TIGR02253 182 KGAKNLGMKTVWINQ 196 (221)
T ss_pred HHHHHCCCEEEEECC
Confidence 999999999999963
No 17
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.35 E-value=4.6e-12 Score=108.25 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=71.3
Q ss_pred hHHHHHHcCCcEEEEecCCH---------------HHHHHHHHHhCCcE---EE--------ccCCCChHH-HHHHHHHh
Q 020934 174 DWAELQRRGFKGLYEYDNDA---------------SKARKLEGKIGIKV---IR--------HRVKKPAGT-AEEIEKHF 226 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~---------------~~v~~l~~~lGI~~---I~--------~~akKP~~~-f~~ALk~l 226 (319)
.++.|+++|++++|+||+.. ..+..+++.+|+.+ +. ....||.+. |..+++++
T Consensus 35 ~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~ 114 (147)
T TIGR01656 35 ALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRL 114 (147)
T ss_pred HHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHc
Confidence 58999999999999999863 35566778889862 21 134699998 89999999
Q ss_pred CCCCCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 227 GCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 227 gv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
|+++++++||||+. .||.+|+++||.+|||.
T Consensus 115 ~~~~~e~i~IGDs~-~Di~~A~~~Gi~~v~i~ 145 (147)
T TIGR01656 115 GVDASRSLVVGDRL-RDLQAARNAGLAAVLLV 145 (147)
T ss_pred CCChHHEEEEcCCH-HHHHHHHHCCCCEEEec
Confidence 99999999999995 89999999999999984
No 18
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.34 E-value=2.1e-12 Score=120.49 Aligned_cols=154 Identities=17% Similarity=0.086 Sum_probs=105.7
Q ss_pred ccccccccccCCCCCcCCCCCccccccccccccccCCCCCceeEehhHHHHHHHHHHccccccccceeeeeeeeccC-Cc
Q 020934 82 NHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRYNKDKYWTVLCTNMWWSQLKAALGQRINVEGIVSSTVVFAKDR-HL 160 (319)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~g~~~liiG~~WW~~l~~~lg~~~n~~gI~~~a~vL~rd~-~l 160 (319)
.+|..+||..+++++.||+++.... +++. +.++.++|......... .+.... ..++++..+. .+
T Consensus 56 ~~l~~~g~~~~~~~i~ts~~~~~~~------l~~~---~~~~~~~g~~~~~~~~~----~~~~~~--~~~Vv~g~~~~~~ 120 (257)
T TIGR01458 56 ERLQRLGFDISEDEVFTPAPAARQL------LEEK---QLRPMLLVDDRVLPDFD----GIDTSD--PNCVVMGLAPEHF 120 (257)
T ss_pred HHHHHcCCCCCHHHeEcHHHHHHHH------HHhc---CCCeEEEECccHHHHhc----cCCCCC--CCEEEEecccCcc
Confidence 3788999999999999999998877 4442 33466666654332222 122222 2234444321 11
Q ss_pred ccCccccCCcchhhHHHHHHcCCcEEEEecCCHH-------------HHHHHHHHhCCcEEEccCCCChHH-HHHHHHHh
Q 020934 161 ALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDAS-------------KARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHF 226 (319)
Q Consensus 161 ~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~-------------~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk~l 226 (319)
.++. + ...+..|++.|++++++||++.. .+..+....|...+. .+||.+. +..+++++
T Consensus 121 ~y~~-----l-~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~--~gKP~p~~~~~~~~~~ 192 (257)
T TIGR01458 121 SYQI-----L-NQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATV--VGKPSKTFFLEALRAT 192 (257)
T ss_pred CHHH-----H-HHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCcee--ecCCCHHHHHHHHHHh
Confidence 1111 1 22478888899999999987532 233444445555432 4699997 88999999
Q ss_pred CCCCCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 227 GCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 227 gv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
|++|++++||||++.+||.+|+++||.+|+|.
T Consensus 193 ~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~ 224 (257)
T TIGR01458 193 GCEPEEAVMIGDDCRDDVGGAQDCGMRGIQVR 224 (257)
T ss_pred CCChhhEEEECCCcHHHHHHHHHcCCeEEEEC
Confidence 99999999999999899999999999999994
No 19
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.34 E-value=5.6e-12 Score=105.43 Aligned_cols=83 Identities=18% Similarity=0.373 Sum_probs=74.1
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-----EEE---ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK-----VIR---HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-----~I~---~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
-++.|+++|++++++||.....+..+++.+|+. ++. .+..||.+. +..+++++|++|++++||||+. .||
T Consensus 85 ~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vgD~~-~d~ 163 (176)
T PF13419_consen 85 LLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVGDSP-SDV 163 (176)
T ss_dssp HHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEESSH-HHH
T ss_pred hhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEeCCH-HHH
Confidence 479999999999999999988888888988875 222 356899997 8999999999999999999999 899
Q ss_pred HhHHHcCCeEEEE
Q 020934 245 VYGNRNGFLTILT 257 (319)
Q Consensus 245 lgAn~aGm~TILV 257 (319)
.+|+++||.||+|
T Consensus 164 ~~A~~~G~~~i~v 176 (176)
T PF13419_consen 164 EAAKEAGIKTIWV 176 (176)
T ss_dssp HHHHHTTSEEEEE
T ss_pred HHHHHcCCeEEeC
Confidence 9999999999997
No 20
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.32 E-value=8.7e-12 Score=109.44 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=72.7
Q ss_pred hHHHHHHcCCcEEEEecCCH---------------HHHHHHHHHhCCcE--E-Ec--------cCCCChHH-HHHHHHHh
Q 020934 174 DWAELQRRGFKGLYEYDNDA---------------SKARKLEGKIGIKV--I-RH--------RVKKPAGT-AEEIEKHF 226 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~---------------~~v~~l~~~lGI~~--I-~~--------~akKP~~~-f~~ALk~l 226 (319)
.++.|+++|++++|+||+.+ ..+..+++++|+.+ + .. ...||.+. +..+++++
T Consensus 37 ~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~ 116 (161)
T TIGR01261 37 ALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKLLEPYLKKN 116 (161)
T ss_pred HHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHc
Confidence 48999999999999999742 24567778888873 2 21 25799997 88999999
Q ss_pred CCCCCceEEEcCCchhhHHhHHHcCCeEEEEccCc
Q 020934 227 GCQSSQLIMVGDRPFTDIVYGNRNGFLTILTEPLS 261 (319)
Q Consensus 227 gv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~Pi~ 261 (319)
++++++++||||+. +||.+|+++||.+|+|.+..
T Consensus 117 ~~~~~e~l~IGD~~-~Di~~A~~aGi~~i~~~~~~ 150 (161)
T TIGR01261 117 LIDKARSYVIGDRE-TDMQLAENLGIRGIQYDEEE 150 (161)
T ss_pred CCCHHHeEEEeCCH-HHHHHHHHCCCeEEEEChhh
Confidence 99999999999996 79999999999999997643
No 21
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=1.8e-11 Score=112.99 Aligned_cols=84 Identities=13% Similarity=0.104 Sum_probs=75.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++|+||+....++.+++.+|+. .+. ....||+|. +.++++++|++|++++||||+. .||
T Consensus 116 ~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~vgDs~-~Di 194 (248)
T PLN02770 116 LKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVFEDSV-SGI 194 (248)
T ss_pred HHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEEcCCH-HHH
Confidence 689999999999999999999999988999975 222 245799998 8999999999999999999998 899
Q ss_pred HhHHHcCCeEEEEc
Q 020934 245 VYGNRNGFLTILTE 258 (319)
Q Consensus 245 lgAn~aGm~TILV~ 258 (319)
.+|+++||.+|+|.
T Consensus 195 ~aA~~aGi~~i~v~ 208 (248)
T PLN02770 195 KAGVAAGMPVVGLT 208 (248)
T ss_pred HHHHHCCCEEEEEe
Confidence 99999999999995
No 22
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.28 E-value=2e-11 Score=110.84 Aligned_cols=87 Identities=20% Similarity=0.192 Sum_probs=77.5
Q ss_pred hhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcE----EE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhh
Q 020934 173 IDWAELQRRGFKGLYEYDNDASKARKLEGKIGIKV----IR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTD 243 (319)
Q Consensus 173 i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~----I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TD 243 (319)
..|+.|+++|++++|+||+....++.+++.+|+.. +. ....||+|. +..+++.+|++|++++||||+. .|
T Consensus 96 e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l~VGDs~-~D 174 (220)
T COG0546 96 ELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALMVGDSL-ND 174 (220)
T ss_pred HHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheEEECCCH-HH
Confidence 37899999999999999999999999999999862 22 357899997 8899999999988999999998 69
Q ss_pred HHhHHHcCCeEEEEc-cC
Q 020934 244 IVYGNRNGFLTILTE-PL 260 (319)
Q Consensus 244 IlgAn~aGm~TILV~-Pi 260 (319)
|.+|++||+.+|+|. +.
T Consensus 175 i~aA~~Ag~~~v~v~~g~ 192 (220)
T COG0546 175 ILAAKAAGVPAVGVTWGY 192 (220)
T ss_pred HHHHHHcCCCEEEEECCC
Confidence 999999999999996 54
No 23
>PRK11587 putative phosphatase; Provisional
Probab=99.27 E-value=1.3e-11 Score=111.02 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=72.8
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc---EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK---VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIV 245 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~---~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIl 245 (319)
.++.|+++|++++|+||+....+...++.+|+. .+. ....||.|. +..+++++|++|++++||||+. +||.
T Consensus 91 ~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~igDs~-~di~ 169 (218)
T PRK11587 91 LLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVEDAP-AGVL 169 (218)
T ss_pred HHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEEecch-hhhH
Confidence 579999999999999999877666666777764 222 246799997 8899999999999999999997 7999
Q ss_pred hHHHcCCeEEEEcc
Q 020934 246 YGNRNGFLTILTEP 259 (319)
Q Consensus 246 gAn~aGm~TILV~P 259 (319)
+|+++||.+|+|..
T Consensus 170 aA~~aG~~~i~v~~ 183 (218)
T PRK11587 170 SGLAAGCHVIAVNA 183 (218)
T ss_pred HHHHCCCEEEEECC
Confidence 99999999999963
No 24
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.27 E-value=2.1e-11 Score=107.30 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=70.0
Q ss_pred hHHHHHHcCCcEEEEecCCHH------------HHHHHHHHhCCcE--EE----ccCCCChHH-HHHHHHHhC--CCCCc
Q 020934 174 DWAELQRRGFKGLYEYDNDAS------------KARKLEGKIGIKV--IR----HRVKKPAGT-AEEIEKHFG--CQSSQ 232 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~------------~v~~l~~~lGI~~--I~----~~akKP~~~-f~~ALk~lg--v~p~e 232 (319)
.++.|+++|++++|+||+... .++.+++.+|+.. +. ....||.+. +..+++++| +++++
T Consensus 50 ~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~ 129 (166)
T TIGR01664 50 KLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTR 129 (166)
T ss_pred HHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchh
Confidence 489999999999999998753 4677889999863 21 135799997 889999999 99999
Q ss_pred eEEEcCCc-------hhhHHhHHHcCCeEEE
Q 020934 233 LIMVGDRP-------FTDIVYGNRNGFLTIL 256 (319)
Q Consensus 233 ~vmVGDrl-------~TDIlgAn~aGm~TIL 256 (319)
++||||+. .+||.+|+++|+.+++
T Consensus 130 ~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 130 SFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred cEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 99999996 4799999999999975
No 25
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.26 E-value=6.7e-11 Score=103.87 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=68.5
Q ss_pred hHHHHHHcCCcEEEEecCCH---------------HHHHHHHHHhCCc---EEE--------ccCCCChHH-HHHHHHHh
Q 020934 174 DWAELQRRGFKGLYEYDNDA---------------SKARKLEGKIGIK---VIR--------HRVKKPAGT-AEEIEKHF 226 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~---------------~~v~~l~~~lGI~---~I~--------~~akKP~~~-f~~ALk~l 226 (319)
.+++|+++|++++|+||+.. ..+..+++.+|+. ++. ....||+|. +..+++++
T Consensus 37 ~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l 116 (181)
T PRK08942 37 AIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERL 116 (181)
T ss_pred HHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcCCCCCHHHHHHHHHHc
Confidence 47999999999999998863 2233445666763 221 146899998 88999999
Q ss_pred CCCCCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 227 GCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 227 gv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
|++|++++||||+. .||.+|+++||.+|+|.
T Consensus 117 ~~~~~~~~~VgDs~-~Di~~A~~aG~~~i~v~ 147 (181)
T PRK08942 117 NIDLAGSPMVGDSL-RDLQAAAAAGVTPVLVR 147 (181)
T ss_pred CCChhhEEEEeCCH-HHHHHHHHCCCeEEEEc
Confidence 99999999999998 79999999999999995
No 26
>PRK09449 dUMP phosphatase; Provisional
Probab=99.26 E-value=3.1e-11 Score=108.09 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=72.0
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCC-CceEEEcCCchhh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQS-SQLIMVGDRPFTD 243 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p-~e~vmVGDrl~TD 243 (319)
.++.|+ +|++++|+||+....+...++.+|+. .+. .+..||.|. |..+++++|+.+ ++++||||+..+|
T Consensus 103 ~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~vgD~~~~D 181 (224)
T PRK09449 103 LLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLMVGDNLHSD 181 (224)
T ss_pred HHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEEEcCCcHHH
Confidence 579999 68999999998888777777888874 221 246799998 899999999854 8999999998779
Q ss_pred HHhHHHcCCeEEEEcc
Q 020934 244 IVYGNRNGFLTILTEP 259 (319)
Q Consensus 244 IlgAn~aGm~TILV~P 259 (319)
|.+|+++||.+|++.+
T Consensus 182 i~~A~~aG~~~i~~~~ 197 (224)
T PRK09449 182 ILGGINAGIDTCWLNA 197 (224)
T ss_pred HHHHHHCCCcEEEECC
Confidence 9999999999999963
No 27
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.26 E-value=1.5e-11 Score=117.81 Aligned_cols=166 Identities=20% Similarity=0.151 Sum_probs=121.1
Q ss_pred cccccccc-cCCCCCcCCCCCccccccccccccccCCCCCceeEehhHHHHHHHHHHcccccccccee------------
Q 020934 83 HTFLDQFY-SSADTNKLGNQDPESQNQEQDEEPRYNKDKYWTVLCTNMWWSQLKAALGQRINVEGIVS------------ 149 (319)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~q~~~~~~~~~~~~~~~~~~g~~~liiG~~WW~~l~~~lg~~~n~~gI~~------------ 149 (319)
.+..+||. -..+++..|++++..- ++...+.+.++.++|.+-..+-.+++|..+-..+...
T Consensus 74 K~~~lG~~~v~e~~i~ssa~~~a~y------lk~~~~~~k~Vyvig~~gi~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~ 147 (306)
T KOG2882|consen 74 KFAKLGFNSVKEENIFSSAYAIADY------LKKRKPFGKKVYVIGEEGIREELDEAGFEYFGGGPDGKDTDGAKSFVLS 147 (306)
T ss_pred HHHHhCccccCcccccChHHHHHHH------HHHhCcCCCeEEEecchhhhHHHHHcCceeecCCCCcccccccccchhh
Confidence 56778887 8889999999999988 7777789999999999999999998886653222111
Q ss_pred -------eeeeeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCC--------------HHHHHHHHHHhCCcEE
Q 020934 150 -------STVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDND--------------ASKARKLEGKIGIKVI 208 (319)
Q Consensus 150 -------~a~vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~--------------~~~v~~l~~~lGI~~I 208 (319)
-|++..+|..+-++.... .+..|++=|. +.+++|.+ ++.++.+....|-..+
T Consensus 148 ~~~d~~VgAVvvg~D~hfsy~KL~k------A~~yLqnP~c-lflatn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~ 220 (306)
T KOG2882|consen 148 IGLDPDVGAVVVGYDEHFSYPKLMK------ALNYLQNPGC-LFLATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPI 220 (306)
T ss_pred cCCCCCCCEEEEecccccCHHHHHH------HHHHhCCCCc-EEEeccCccccCCCCCeeccCCccHHHHHHHHhcCCCe
Confidence 122233332222221111 3466665554 35666653 3456777777777665
Q ss_pred EccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEE-ccCcCC
Q 020934 209 RHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT-EPLSLA 263 (319)
Q Consensus 209 ~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV-~Pi~~~ 263 (319)
. .+||.+. +..++++++++|++++|||||+.|||+.|++.|+.|+|| ++++..
T Consensus 221 v--~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~l 275 (306)
T KOG2882|consen 221 V--LGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTL 275 (306)
T ss_pred e--cCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcH
Confidence 3 7899997 778899999999999999999999999999999999999 576643
No 28
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.25 E-value=2.8e-11 Score=111.10 Aligned_cols=84 Identities=20% Similarity=0.128 Sum_probs=73.1
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-----EEE----ccCCCChHH-HHHHHHHhCCC-CCceEEEcCCchh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK-----VIR----HRVKKPAGT-AEEIEKHFGCQ-SSQLIMVGDRPFT 242 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-----~I~----~~akKP~~~-f~~ALk~lgv~-p~e~vmVGDrl~T 242 (319)
.++.|+++|++++|+||+....++.+++.+|+. .|. ....||.|. +.++++++|+. |++++||||++ +
T Consensus 107 ~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l~IGDs~-~ 185 (253)
T TIGR01422 107 VIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACVKVGDTV-P 185 (253)
T ss_pred HHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchheEEECCcH-H
Confidence 589999999999999999988888887777653 222 246799998 89999999995 99999999998 8
Q ss_pred hHHhHHHcCCeEEEEc
Q 020934 243 DIVYGNRNGFLTILTE 258 (319)
Q Consensus 243 DIlgAn~aGm~TILV~ 258 (319)
||.+|+++||.+|+|.
T Consensus 186 Di~aA~~aGi~~i~v~ 201 (253)
T TIGR01422 186 DIEEGRNAGMWTVGLI 201 (253)
T ss_pred HHHHHHHCCCeEEEEe
Confidence 9999999999999995
No 29
>PLN02645 phosphoglycolate phosphatase
Probab=99.25 E-value=3.2e-11 Score=115.41 Aligned_cols=167 Identities=18% Similarity=0.134 Sum_probs=103.4
Q ss_pred ccccccccccCCCCCcCCCCCcccccccccccccc-CCCCCceeEehhHHHHHHHHHHccccccccceeeeeeeeccCC-
Q 020934 82 NHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRY-NKDKYWTVLCTNMWWSQLKAALGQRINVEGIVSSTVVFAKDRH- 159 (319)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~-~~~g~~~liiG~~WW~~l~~~lg~~~n~~gI~~~a~vL~rd~~- 159 (319)
.+|..+||....+.+.||..+.... +++. .+.+.++.++|..-..+..+..|..... +..........++.
T Consensus 79 ~~l~~lGi~~~~~~I~ts~~~~~~~------l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~~~-g~~~~~~~~~~~~~~ 151 (311)
T PLN02645 79 KKFESLGLNVTEEEIFSSSFAAAAY------LKSINFPKDKKVYVIGEEGILEELELAGFQYLG-GPEDGDKKIELKPGF 151 (311)
T ss_pred HHHHHCCCCCChhhEeehHHHHHHH------HHhhccCCCCEEEEEcCHHHHHHHHHCCCEEec-Ccccccccccccccc
Confidence 3778999999999999999877776 4432 2345578889988776666655543211 00000000000000
Q ss_pred -c-ccC--c-cccCCcchhhH-------HHHHH-cCCcEEEEecCCHH--------------HHHHHHHHhCCcEEEccC
Q 020934 160 -L-ALP--H-VTVPDIRYIDW-------AELQR-RGFKGLYEYDNDAS--------------KARKLEGKIGIKVIRHRV 212 (319)
Q Consensus 160 -l-~~P--~-~~v~~i~~i~l-------~~Lke-~Gikl~I~SNn~~~--------------~v~~l~~~lGI~~I~~~a 212 (319)
. ..+ . +.+...+..++ ..|++ .|. .+|+||++.. .+..+....|...+ ..
T Consensus 152 ~~~~~~~i~aVvvg~d~~~~~~~l~~a~~~l~~~~g~-~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~--~~ 228 (311)
T PLN02645 152 LMEHDKDVGAVVVGFDRYINYYKIQYATLCIRENPGC-LFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPL--VV 228 (311)
T ss_pred ccccCCCCCEEEEecCCCCCHHHHHHHHHHHhcCCCC-EEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcc--cC
Confidence 0 001 1 11122223333 23333 344 5678877531 12333334454433 25
Q ss_pred CCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 213 KKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 213 kKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
+||.+. +..+++++++++++++||||++.|||.+|+++||++|+|.
T Consensus 229 gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~ 275 (311)
T PLN02645 229 GKPSTFMMDYLANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVL 275 (311)
T ss_pred CCChHHHHHHHHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEc
Confidence 799998 8899999999999999999999899999999999999994
No 30
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.24 E-value=4.4e-11 Score=102.55 Aligned_cols=82 Identities=22% Similarity=0.264 Sum_probs=70.1
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
-++.|+++|++++++||+.... ..+...+|+. .+. .+..||.+. +..+++++|++|++++||||+. .||
T Consensus 93 ~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vgD~~-~di 170 (183)
T TIGR01509 93 LLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFVDDSP-AGI 170 (183)
T ss_pred HHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEEcCCH-HHH
Confidence 5789999999999999988776 6555557874 222 357899997 8999999999999999999998 699
Q ss_pred HhHHHcCCeEEEE
Q 020934 245 VYGNRNGFLTILT 257 (319)
Q Consensus 245 lgAn~aGm~TILV 257 (319)
.+|+++||.+|+|
T Consensus 171 ~aA~~~G~~~i~v 183 (183)
T TIGR01509 171 EAAKAAGMHTVLV 183 (183)
T ss_pred HHHHHcCCEEEeC
Confidence 9999999999986
No 31
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.24 E-value=4e-11 Score=109.15 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=73.7
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++|+||+....++.+++.+|+. ++. ....||.|. +.++++++|++|++++||||+. +||
T Consensus 103 ~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~IGDs~-~Di 181 (229)
T PRK13226 103 MLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYVGDDE-RDI 181 (229)
T ss_pred HHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEeCCCH-HHH
Confidence 578999999999999999888788788888874 232 246799998 8999999999999999999997 899
Q ss_pred HhHHHcCCeEEEEc
Q 020934 245 VYGNRNGFLTILTE 258 (319)
Q Consensus 245 lgAn~aGm~TILV~ 258 (319)
.+|+++||.+|+|.
T Consensus 182 ~aA~~aG~~~i~v~ 195 (229)
T PRK13226 182 LAARAAGMPSVAAL 195 (229)
T ss_pred HHHHHCCCcEEEEe
Confidence 99999999999994
No 32
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.24 E-value=3.7e-11 Score=112.76 Aligned_cols=86 Identities=9% Similarity=0.070 Sum_probs=76.2
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++|+||+....+..+++.+|+. .+. ....||+|. +..|++++|++|++++||||+. +||
T Consensus 117 ~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~IgDs~-~Di 195 (260)
T PLN03243 117 FVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVFGNSN-SSV 195 (260)
T ss_pred HHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEEcCCH-HHH
Confidence 589999999999999999988899888999984 222 245799998 8999999999999999999997 799
Q ss_pred HhHHHcCCeEEEEccC
Q 020934 245 VYGNRNGFLTILTEPL 260 (319)
Q Consensus 245 lgAn~aGm~TILV~Pi 260 (319)
.+|+++||.+|+|.+.
T Consensus 196 ~aA~~aG~~~i~v~g~ 211 (260)
T PLN03243 196 EAAHDGCMKCVAVAGK 211 (260)
T ss_pred HHHHHcCCEEEEEecC
Confidence 9999999999999754
No 33
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.24 E-value=4.9e-11 Score=105.86 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=74.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++|+||+....+..+++.+|+. .+. ....||.+. +.++++++|++|++++||||++ .||
T Consensus 83 ~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~igD~~-~Di 161 (205)
T TIGR01454 83 LLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVGDAV-TDL 161 (205)
T ss_pred HHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEEEcCCH-HHH
Confidence 589999999999999999988888888888884 222 246799997 8999999999999999999997 799
Q ss_pred HhHHHcCCeEEEEc
Q 020934 245 VYGNRNGFLTILTE 258 (319)
Q Consensus 245 lgAn~aGm~TILV~ 258 (319)
.+|+++||.+|+|.
T Consensus 162 ~aA~~~Gi~~i~~~ 175 (205)
T TIGR01454 162 ASARAAGTATVAAL 175 (205)
T ss_pred HHHHHcCCeEEEEE
Confidence 99999999999995
No 34
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.23 E-value=5.2e-11 Score=105.65 Aligned_cols=85 Identities=21% Similarity=0.231 Sum_probs=74.1
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHh-CCCCCceEEEcCCchhh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHF-GCQSSQLIMVGDRPFTD 243 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~l-gv~p~e~vmVGDrl~TD 243 (319)
.++.|+++ ++++++||+....+..+++.+|+. .+. .+..||.|. +..+++++ |++|+++|||||+..+|
T Consensus 105 ~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~igD~~~~d 183 (224)
T TIGR02254 105 LMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLMIGDSLTAD 183 (224)
T ss_pred HHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEEECCCcHHH
Confidence 57999999 999999999888888888888884 222 245799998 88999999 99999999999998679
Q ss_pred HHhHHHcCCeEEEEcc
Q 020934 244 IVYGNRNGFLTILTEP 259 (319)
Q Consensus 244 IlgAn~aGm~TILV~P 259 (319)
|.+|+++||.+|++..
T Consensus 184 i~~A~~~G~~~i~~~~ 199 (224)
T TIGR02254 184 IKGGQNAGLDTCWMNP 199 (224)
T ss_pred HHHHHHCCCcEEEECC
Confidence 9999999999999964
No 35
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.22 E-value=2e-11 Score=93.44 Aligned_cols=52 Identities=33% Similarity=0.357 Sum_probs=47.3
Q ss_pred CCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEc-cCcCC
Q 020934 212 VKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE-PLSLA 263 (319)
Q Consensus 212 akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~-Pi~~~ 263 (319)
.+||.|. +..|++++++++++++||||++.|||.+|+++|+.+|+|. +....
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~ 55 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSP 55 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCC
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCH
Confidence 5899998 8899999999999999999998899999999999999995 55443
No 36
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.22 E-value=4.4e-11 Score=106.89 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=73.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc------EEE----ccCCCChHH-HHHHHHHhCCC-CCceEEEcCCch
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK------VIR----HRVKKPAGT-AEEIEKHFGCQ-SSQLIMVGDRPF 241 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~------~I~----~~akKP~~~-f~~ALk~lgv~-p~e~vmVGDrl~ 241 (319)
-++.|+++|++++|+||+....+..+++.+|+. .+. ....||.|. +..+++++|+. |++++||||+.
T Consensus 95 ~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~igD~~- 173 (220)
T TIGR03351 95 AFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQSVAVAGDTP- 173 (220)
T ss_pred HHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhHeEEeCCCH-
Confidence 579999999999999999988888888888874 222 246899997 88999999997 79999999998
Q ss_pred hhHHhHHHcCCeE-EEEc
Q 020934 242 TDIVYGNRNGFLT-ILTE 258 (319)
Q Consensus 242 TDIlgAn~aGm~T-ILV~ 258 (319)
+||.+|+++||.+ |+|.
T Consensus 174 ~Di~aa~~aG~~~~i~~~ 191 (220)
T TIGR03351 174 NDLEAGINAGAGAVVGVL 191 (220)
T ss_pred HHHHHHHHCCCCeEEEEe
Confidence 8999999999999 8885
No 37
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.21 E-value=5e-11 Score=105.42 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=74.0
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++|+||.....++.+++.+|+. .+. ....||.|. +.++++++|++|++++||||+. +|+
T Consensus 93 ~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~igDs~-~d~ 171 (213)
T TIGR01449 93 TLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYVGDSR-VDI 171 (213)
T ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEeCCCH-HHH
Confidence 579999999999999999888888888888874 222 235799997 8999999999999999999996 899
Q ss_pred HhHHHcCCeEEEEc
Q 020934 245 VYGNRNGFLTILTE 258 (319)
Q Consensus 245 lgAn~aGm~TILV~ 258 (319)
.+|+++||.+|+|.
T Consensus 172 ~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 172 QAARAAGCPSVLLT 185 (213)
T ss_pred HHHHHCCCeEEEEc
Confidence 99999999999995
No 38
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.21 E-value=6.1e-11 Score=105.30 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=69.2
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHH-hCC----cEE--E--ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGK-IGI----KVI--R--HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTD 243 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~-lGI----~~I--~--~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TD 243 (319)
.++.|+++|++++|+||+....+..+... .++ +.+ . .+..||+|. |..+++++|++|++++||||+. +|
T Consensus 92 ~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~vgD~~-~d 170 (199)
T PRK09456 92 IMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVFFDDNA-DN 170 (199)
T ss_pred HHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEEeCCCH-HH
Confidence 57999999999999999876655443322 233 222 1 367899998 8999999999999999999997 79
Q ss_pred HHhHHHcCCeEEEEcc
Q 020934 244 IVYGNRNGFLTILTEP 259 (319)
Q Consensus 244 IlgAn~aGm~TILV~P 259 (319)
|.+|+++||.+|++..
T Consensus 171 i~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 171 IEAANALGITSILVTD 186 (199)
T ss_pred HHHHHHcCCEEEEecC
Confidence 9999999999999965
No 39
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.21 E-value=4.9e-11 Score=107.27 Aligned_cols=85 Identities=9% Similarity=0.087 Sum_probs=74.9
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++|+||+....++.+++.+|+. .+. ....||.+. +..+++++|++|++++||||+. +||
T Consensus 100 ~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~igDs~-~Di 178 (222)
T PRK10826 100 ALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVALEDSF-NGM 178 (222)
T ss_pred HHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCh-hhH
Confidence 579999999999999999888888888888875 221 236799997 8999999999999999999998 899
Q ss_pred HhHHHcCCeEEEEcc
Q 020934 245 VYGNRNGFLTILTEP 259 (319)
Q Consensus 245 lgAn~aGm~TILV~P 259 (319)
.+|+++||.+|+|..
T Consensus 179 ~aA~~aG~~~i~v~~ 193 (222)
T PRK10826 179 IAAKAARMRSIVVPA 193 (222)
T ss_pred HHHHHcCCEEEEecC
Confidence 999999999999963
No 40
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.21 E-value=5.3e-11 Score=106.27 Aligned_cols=84 Identities=19% Similarity=0.206 Sum_probs=74.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcE----EE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKV----IR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~----I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++|+||+....+..+++.+|+.- +. ....||.|. +.++++++|++|++++||||+. .||
T Consensus 90 ~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~iGDs~-~Di 168 (214)
T PRK13288 90 TLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMVGDNH-HDI 168 (214)
T ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEECCCH-HHH
Confidence 5799999999999999999888888889999852 21 245799997 8999999999999999999998 799
Q ss_pred HhHHHcCCeEEEEc
Q 020934 245 VYGNRNGFLTILTE 258 (319)
Q Consensus 245 lgAn~aGm~TILV~ 258 (319)
.+|+++||.+|+|.
T Consensus 169 ~aa~~aG~~~i~v~ 182 (214)
T PRK13288 169 LAGKNAGTKTAGVA 182 (214)
T ss_pred HHHHHCCCeEEEEc
Confidence 99999999999995
No 41
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.20 E-value=9.6e-11 Score=106.91 Aligned_cols=87 Identities=11% Similarity=0.138 Sum_probs=73.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EE----EccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VI----RHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I----~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++|+||+....+...++.+|+. .+ ..+..||.|. |..+++++|++|++++||||+. .||
T Consensus 101 ~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~igDs~-~di 179 (224)
T PRK14988 101 FLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLFIDDSE-PIL 179 (224)
T ss_pred HHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCH-HHH
Confidence 589999999999999998888787777888873 22 1356899997 8999999999999999999998 699
Q ss_pred HhHHHcCCeE-EEEc-cCc
Q 020934 245 VYGNRNGFLT-ILTE-PLS 261 (319)
Q Consensus 245 lgAn~aGm~T-ILV~-Pi~ 261 (319)
.+|+++||.+ +.|. |.+
T Consensus 180 ~aA~~aG~~~~~~v~~~~~ 198 (224)
T PRK14988 180 DAAAQFGIRYCLGVTNPDS 198 (224)
T ss_pred HHHHHcCCeEEEEEeCCCC
Confidence 9999999986 5563 544
No 42
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.18 E-value=8.1e-11 Score=101.68 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=68.7
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++|+||... ...+++.+|+. .+. ....||.|. +.+++++++++|++++||||+. .||
T Consensus 95 ~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~vgD~~-~di 171 (185)
T TIGR01990 95 LLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGIEDAQ-AGI 171 (185)
T ss_pred HHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEEecCH-HHH
Confidence 57999999999999997542 34566778874 221 246899998 8999999999999999999997 899
Q ss_pred HhHHHcCCeEEEEc
Q 020934 245 VYGNRNGFLTILTE 258 (319)
Q Consensus 245 lgAn~aGm~TILV~ 258 (319)
.+|+++||.+|.|.
T Consensus 172 ~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 172 EAIKAAGMFAVGVG 185 (185)
T ss_pred HHHHHcCCEEEecC
Confidence 99999999999873
No 43
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.15 E-value=1.3e-10 Score=106.62 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=66.6
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.|+.|++. ++++++||++.. .+.+|+. .+. ....||.+. |..+++++|++|++++||||++.+||
T Consensus 121 ~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di 194 (238)
T PRK10748 121 TLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDV 194 (238)
T ss_pred HHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHH
Confidence 68999875 999999987643 1455653 221 246799997 88999999999999999999987899
Q ss_pred HhHHHcCCeEEEEccC
Q 020934 245 VYGNRNGFLTILTEPL 260 (319)
Q Consensus 245 lgAn~aGm~TILV~Pi 260 (319)
.+|+++||.+|||.+.
T Consensus 195 ~~A~~aG~~~i~v~~~ 210 (238)
T PRK10748 195 AGAIRCGMQACWINPE 210 (238)
T ss_pred HHHHHCCCeEEEEcCC
Confidence 9999999999999754
No 44
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.15 E-value=2.1e-10 Score=106.55 Aligned_cols=84 Identities=17% Similarity=0.050 Sum_probs=71.3
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCC-----cEEE----ccCCCChHH-HHHHHHHhCCC-CCceEEEcCCchh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGI-----KVIR----HRVKKPAGT-AEEIEKHFGCQ-SSQLIMVGDRPFT 242 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI-----~~I~----~~akKP~~~-f~~ALk~lgv~-p~e~vmVGDrl~T 242 (319)
.++.|+++|++++|+||+....+..+++.+|+ ..|. ....||+|. +.++++++|+. |++++||||+. +
T Consensus 109 lL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l~IGDs~-~ 187 (267)
T PRK13478 109 VIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACVKVDDTV-P 187 (267)
T ss_pred HHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceEEEcCcH-H
Confidence 58999999999999999988877777776543 2332 246799998 89999999996 69999999998 8
Q ss_pred hHHhHHHcCCeEEEEc
Q 020934 243 DIVYGNRNGFLTILTE 258 (319)
Q Consensus 243 DIlgAn~aGm~TILV~ 258 (319)
||.+|+++||.+|+|.
T Consensus 188 Di~aA~~aG~~~i~v~ 203 (267)
T PRK13478 188 GIEEGLNAGMWTVGVI 203 (267)
T ss_pred HHHHHHHCCCEEEEEc
Confidence 9999999999999995
No 45
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.15 E-value=1e-10 Score=104.03 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=66.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHH--HHHHHHHhCC----cEE--E--ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchh
Q 020934 174 DWAELQRRGFKGLYEYDNDASK--ARKLEGKIGI----KVI--R--HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFT 242 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~--v~~l~~~lGI----~~I--~--~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~T 242 (319)
.++.|+++|++++|+||+.... .......+++ +.+ . .+..||.|. |..+++++|++|++++||||.. +
T Consensus 102 ~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~l~i~D~~-~ 180 (211)
T TIGR02247 102 AIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEECVFLDDLG-S 180 (211)
T ss_pred HHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCH-H
Confidence 4789999999999999876432 2222222333 222 1 245799998 8899999999999999999987 7
Q ss_pred hHHhHHHcCCeEEEEcc
Q 020934 243 DIVYGNRNGFLTILTEP 259 (319)
Q Consensus 243 DIlgAn~aGm~TILV~P 259 (319)
||.+|+++||.+|+|.+
T Consensus 181 di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 181 NLKPAAALGITTIKVSD 197 (211)
T ss_pred HHHHHHHcCCEEEEECC
Confidence 99999999999999965
No 46
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.15 E-value=1.3e-10 Score=100.33 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=69.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++++||+ ..++.+++.+|+. .+. ....||.+. +..+++++|++|++++||||+. .||
T Consensus 96 ~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~IgD~~-~di 172 (185)
T TIGR02009 96 FLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECVVFEDAL-AGV 172 (185)
T ss_pred HHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEEEeCcH-hhH
Confidence 579999999999999977 6677777888874 232 246799997 8899999999999999999997 799
Q ss_pred HhHHHcCCeEEEE
Q 020934 245 VYGNRNGFLTILT 257 (319)
Q Consensus 245 lgAn~aGm~TILV 257 (319)
.+|+++||.+|.|
T Consensus 173 ~aA~~~G~~~i~v 185 (185)
T TIGR02009 173 QAARAAGMFAVAV 185 (185)
T ss_pred HHHHHCCCeEeeC
Confidence 9999999999976
No 47
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.14 E-value=5.9e-10 Score=109.61 Aligned_cols=98 Identities=20% Similarity=0.209 Sum_probs=76.2
Q ss_pred hHHHHHHcCCcEEEEecCC---------------HHHHHHHHHHhCCcE--E-E--------ccCCCChHH-HHHHHHHh
Q 020934 174 DWAELQRRGFKGLYEYDND---------------ASKARKLEGKIGIKV--I-R--------HRVKKPAGT-AEEIEKHF 226 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~---------------~~~v~~l~~~lGI~~--I-~--------~~akKP~~~-f~~ALk~l 226 (319)
.++.|+++|++++|+||++ ...+..+++.+|+.+ + . ...+||.+. +..+++.+
T Consensus 38 ~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l 117 (354)
T PRK05446 38 ALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEG 117 (354)
T ss_pred HHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHc
Confidence 4799999999999999963 223445677888763 2 1 136799997 78899999
Q ss_pred CCCCCceEEEcCCchhhHHhHHHcCCeEEEEccCcCCCchhHHHHHHHHH
Q 020934 227 GCQSSQLIMVGDRPFTDIVYGNRNGFLTILTEPLSLAEEPFIVRQVRKLE 276 (319)
Q Consensus 227 gv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~Pi~~~~e~~~trl~R~lE 276 (319)
+++|++++||||+. +||.+|+++||++|+|+|-. .-+-.+.++++
T Consensus 118 ~v~~~~svmIGDs~-sDi~aAk~aGi~~I~v~~~~----~~~~~i~~~l~ 162 (354)
T PRK05446 118 AIDLANSYVIGDRE-TDVQLAENMGIKGIRYARET----LNWDAIAEQLT 162 (354)
T ss_pred CCCcccEEEEcCCH-HHHHHHHHCCCeEEEEECCC----CCHHHHHHHHh
Confidence 99999999999997 89999999999999997733 22335555544
No 48
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.13 E-value=2.2e-10 Score=105.27 Aligned_cols=166 Identities=16% Similarity=0.102 Sum_probs=97.0
Q ss_pred cccccccccc-CCCCCcCCCCCccccccccccccccCCCCCceeEehhHHHHHHHHHHccccccc-cc-eeeeeeeeccC
Q 020934 82 NHTFLDQFYS-SADTNKLGNQDPESQNQEQDEEPRYNKDKYWTVLCTNMWWSQLKAALGQRINVE-GI-VSSTVVFAKDR 158 (319)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~g~~~liiG~~WW~~l~~~lg~~~n~~-gI-~~~a~vL~rd~ 158 (319)
..|..+|+.. ..+.+.+|....... -...+++..-.+.+++++|+.-.. +..-.+..+... .. ...++++..+.
T Consensus 58 ~~L~~~gl~~~~~~~Ii~s~~~~~~~--l~~~~~~~~~~~~~~~~vGd~~~d-~~~~~~~~~~~~~~~~~~~~vvv~~~~ 134 (242)
T TIGR01459 58 KTLKSLGINADLPEMIISSGEIAVQM--ILESKKRFDIRNGIIYLLGHLEND-IINLMQCYTTDDENKANASLITIYRSE 134 (242)
T ss_pred HHHHHCCCCccccceEEccHHHHHHH--HHhhhhhccCCCceEEEeCCcccc-hhhhcCCCccccCCcccCcEEEEcCCC
Confidence 3678899987 678888887654322 000012222346778888885431 111011111110 00 11122222221
Q ss_pred CcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHH-------------HHHHHHHhCCcEEEccCCCChHH-HHHHHH
Q 020934 159 HLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASK-------------ARKLEGKIGIKVIRHRVKKPAGT-AEEIEK 224 (319)
Q Consensus 159 ~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~-------------v~~l~~~lGI~~I~~~akKP~~~-f~~ALk 224 (319)
. ....++. ....++.|+++|+++ |+||++... +..+ +..|-..+ ..+||.+. +..+++
T Consensus 135 ~---~~~~~~~-~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i-~~~g~~~~--~~gKP~~~~~~~~~~ 206 (242)
T TIGR01459 135 N---EKLDLDE-FDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELI-KQLGGKVI--YSGKPYPAIFHKALK 206 (242)
T ss_pred c---ccCCHHH-HHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHH-HHhCCcEe--cCCCCCHHHHHHHHH
Confidence 0 0000111 122467788899996 778875322 1222 22454443 37899998 889999
Q ss_pred HhCCC-CCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 225 HFGCQ-SSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 225 ~lgv~-p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
++|.. +++++||||++.+||.+|+++||.+|+|.
T Consensus 207 ~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 207 ECSNIPKNRMLMVGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred HcCCCCcccEEEECCCcHHHHHHHHHCCCeEEEEe
Confidence 99975 57999999998899999999999999985
No 49
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.13 E-value=2.3e-10 Score=99.51 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=72.3
Q ss_pred hhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhh
Q 020934 173 IDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTD 243 (319)
Q Consensus 173 i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TD 243 (319)
..++.|++. ++++|+||+....++..++.+|+. .|. ....||.|. +..+++++|++|++++||||+. +|
T Consensus 94 e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igDs~-~d 171 (188)
T PRK10725 94 EVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDAD-FG 171 (188)
T ss_pred HHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEeccH-hh
Confidence 357888765 899999998888888888888884 232 356899998 8999999999999999999996 89
Q ss_pred HHhHHHcCCeEEEEc
Q 020934 244 IVYGNRNGFLTILTE 258 (319)
Q Consensus 244 IlgAn~aGm~TILV~ 258 (319)
|.+|+++|+.+|.|.
T Consensus 172 i~aA~~aG~~~i~~~ 186 (188)
T PRK10725 172 IQAARAAGMDAVDVR 186 (188)
T ss_pred HHHHHHCCCEEEeec
Confidence 999999999999985
No 50
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.12 E-value=3.5e-10 Score=112.18 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=75.6
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++|+||+....++.+++.+|+. .|. ....||.|. |..+++++|++|++++||||+. +||
T Consensus 224 lL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~IGDS~-~DI 302 (381)
T PLN02575 224 FVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVFGNSN-QTV 302 (381)
T ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCH-HHH
Confidence 479999999999999999999999999999984 232 245799997 8999999999999999999998 799
Q ss_pred HhHHHcCCeEEEEcc
Q 020934 245 VYGNRNGFLTILTEP 259 (319)
Q Consensus 245 lgAn~aGm~TILV~P 259 (319)
.+|+++||.+|+|..
T Consensus 303 eAAk~AGm~~IgV~~ 317 (381)
T PLN02575 303 EAAHDARMKCVAVAS 317 (381)
T ss_pred HHHHHcCCEEEEECC
Confidence 999999999999964
No 51
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.10 E-value=4.6e-10 Score=103.31 Aligned_cols=158 Identities=16% Similarity=0.069 Sum_probs=102.4
Q ss_pred cccc-cccccCCCCCcCCCCCccccccccccccccCCCCCceeEehhHHHHHHHHHHcccc--cc-ccc----e-eeeee
Q 020934 83 HTFL-DQFYSSADTNKLGNQDPESQNQEQDEEPRYNKDKYWTVLCTNMWWSQLKAALGQRI--NV-EGI----V-SSTVV 153 (319)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~g~~~liiG~~WW~~l~~~lg~~~--n~-~gI----~-~~a~v 153 (319)
+|.. +|+..+++++.||.++.... +++.. .+.++.++|..-.....+..|... .. ... . ..+++
T Consensus 50 ~l~~~~g~~~~~~~iits~~~~~~~------l~~~~-~~~~v~v~G~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~vv 122 (236)
T TIGR01460 50 KLSSLLGVDVSPDQIITSGSVTKDL------LRQRF-EGEKVYVIGVGELRESLEGLGFRNDFFDDIDHLAIEKIPAAVI 122 (236)
T ss_pred HHHHhcCCCCCHHHeeeHHHHHHHH------HHHhC-CCCEEEEECCHHHHHHHHHcCCcCcccCcccccccCCCCeEEE
Confidence 7777 79999999999999999988 55432 456789999887777777666431 00 000 0 11222
Q ss_pred eeccCCcccCccccCCcchhh-HHHHHHcC-CcEEEEecCCH--------------HHHHHHHHHhCCcEEEccCCCChH
Q 020934 154 FAKDRHLALPHVTVPDIRYID-WAELQRRG-FKGLYEYDNDA--------------SKARKLEGKIGIKVIRHRVKKPAG 217 (319)
Q Consensus 154 L~rd~~l~~P~~~v~~i~~i~-l~~Lke~G-ikl~I~SNn~~--------------~~v~~l~~~lGI~~I~~~akKP~~ 217 (319)
+..+... .+ ..+. ...+-++| .+ ++++|.+. ..++.+....|...+ ..+||.+
T Consensus 123 ~~~~~~~-----~~---~~~~~a~~~l~~~~~~-~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~--~~~KP~~ 191 (236)
T TIGR01460 123 VGEPSDF-----SY---DELAKAAYLLAEGDVP-FIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPT--VVGKPSP 191 (236)
T ss_pred ECCCCCc-----CH---HHHHHHHHHHhCCCCe-EEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceee--eecCCCH
Confidence 2222110 00 0111 12222345 44 56677431 123444444455443 2569999
Q ss_pred H-HHHHHHHhCCCCCce-EEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 218 T-AEEIEKHFGCQSSQL-IMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 218 ~-f~~ALk~lgv~p~e~-vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
. ++.++++++++++++ +||||++.+||.+|+++|+.+|+|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~ 234 (236)
T TIGR01460 192 AIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVL 234 (236)
T ss_pred HHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEe
Confidence 8 889999999999998 9999999899999999999999994
No 52
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.08 E-value=6.6e-10 Score=97.05 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=66.9
Q ss_pred HHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccC----CCChHH-HHHHHHHhCCCCCceEEEcCCchh
Q 020934 176 AELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRV----KKPAGT-AEEIEKHFGCQSSQLIMVGDRPFT 242 (319)
Q Consensus 176 ~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~a----kKP~~~-f~~ALk~lgv~p~e~vmVGDrl~T 242 (319)
+.|++..++++++||+....+..+++.+|+. .+. ... .||.|. +..+++++|++|++++||||+. +
T Consensus 91 ~~L~~L~~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~vgD~~-~ 169 (184)
T TIGR01993 91 NLLLRLPGRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPERAIFFDDSA-R 169 (184)
T ss_pred HHHHhCCCCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccceEEEeCCH-H
Confidence 3344444689999999988888888998884 222 122 499998 8899999999999999999997 7
Q ss_pred hHHhHHHcCCeEEEE
Q 020934 243 DIVYGNRNGFLTILT 257 (319)
Q Consensus 243 DIlgAn~aGm~TILV 257 (319)
||.+|+++||.+|+|
T Consensus 170 di~aA~~~G~~~i~v 184 (184)
T TIGR01993 170 NIAAAKALGMKTVLV 184 (184)
T ss_pred HHHHHHHcCCEEeeC
Confidence 999999999999986
No 53
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.07 E-value=4.1e-10 Score=108.41 Aligned_cols=165 Identities=20% Similarity=0.138 Sum_probs=97.8
Q ss_pred cc-cccccccCCCCCcCCCCCccccccccccccccCCCCCceeEehhHHHHHHHHHHccccccc--cc------------
Q 020934 83 HT-FLDQFYSSADTNKLGNQDPESQNQEQDEEPRYNKDKYWTVLCTNMWWSQLKAALGQRINVE--GI------------ 147 (319)
Q Consensus 83 ~~-~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~g~~~liiG~~WW~~l~~~lg~~~n~~--gI------------ 147 (319)
+| ..+|+..+++++.+|..+...+ +.+. +..+.++|........+..|...-.. .+
T Consensus 56 ~l~~~lG~~~~~~~i~~s~~~~~~l------l~~~---~~~v~viG~~~~~~~l~~~G~~~vv~~~~~~~~~p~~~~~~~ 126 (321)
T TIGR01456 56 EISSLLGVDVSPLQVIQSHSPYKSL------VNKY---EKRILAVGTGSVRGVAEGYGFQNVVHQDEIVRYFRDIDPFSG 126 (321)
T ss_pred HHHHHcCCCCCHHHHHhhhHHHHHH------HHHc---CCceEEEeChHHHHHHHHcCCcccccHHHHHhcCCCCCcccc
Confidence 44 6789999999999998765554 3222 23678899998888888777442110 00
Q ss_pred -------------------eeeeeeeeccCCcccCccccCCcchhhHHHHHHcCC---------cEEEEecCC-------
Q 020934 148 -------------------VSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGF---------KGLYEYDND------- 192 (319)
Q Consensus 148 -------------------~~~a~vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gi---------kl~I~SNn~------- 192 (319)
...++++..++ +....++ .+....|+..|. ..++++|.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~aVvv~~d~-----~~~~~~l-~~~~~~l~~~g~~g~~~~~~~~~~i~~n~D~~~p~~~ 200 (321)
T TIGR01456 127 MSDEQVREYSRDIPDLTTKRFDAVLVFNDP-----VDWAADI-QIISDALNSEGLPGEKSGKPSIPIYFSNQDLLWANEY 200 (321)
T ss_pred cCHHHhhcccccccccCCCceeEEEEecCc-----hHHhhhH-HHHHHHHhCCCCcCCCCCCCCCCEEEeCCCEeeccCC
Confidence 00112221111 0000000 112244444331 125666753
Q ss_pred -------HHHHHHHHH----HhCCcEEEccCCCChHH-HHHHHHHh--------CC-----CCCceEEEcCCchhhHHhH
Q 020934 193 -------ASKARKLEG----KIGIKVIRHRVKKPAGT-AEEIEKHF--------GC-----QSSQLIMVGDRPFTDIVYG 247 (319)
Q Consensus 193 -------~~~v~~l~~----~lGI~~I~~~akKP~~~-f~~ALk~l--------gv-----~p~e~vmVGDrl~TDIlgA 247 (319)
|..+..+.. ..|.+.-....+||.+. |+.|++.+ ++ ++++++||||++.|||.||
T Consensus 201 g~~~~g~Ga~~~~l~~~~~~~tg~~~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga 280 (321)
T TIGR01456 201 KLNRFGQGAFRLLLERIYLELNGKPLQYYTLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGA 280 (321)
T ss_pred CCceechHHHHHHHHHHHHHhcCCCcceEEcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhH
Confidence 222334433 34654211136899997 77888777 43 4579999999999999999
Q ss_pred HHcCCeEEEEc-cCcC
Q 020934 248 NRNGFLTILTE-PLSL 262 (319)
Q Consensus 248 n~aGm~TILV~-Pi~~ 262 (319)
+++||.||||. +...
T Consensus 281 ~~~G~~silV~tG~~~ 296 (321)
T TIGR01456 281 QNYGWFSCLVKTGVYN 296 (321)
T ss_pred HhCCceEEEecccccC
Confidence 99999999995 4443
No 54
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.06 E-value=9.6e-10 Score=99.13 Aligned_cols=107 Identities=22% Similarity=0.298 Sum_probs=85.2
Q ss_pred eeeeeccCCcccCcc-ccCCcchhh--------HHHHHHcCCcEEEEecCCHH---------------HHHHHHHHhCCc
Q 020934 151 TVVFAKDRHLALPHV-TVPDIRYID--------WAELQRRGFKGLYEYDNDAS---------------KARKLEGKIGIK 206 (319)
Q Consensus 151 a~vL~rd~~l~~P~~-~v~~i~~i~--------l~~Lke~Gikl~I~SNn~~~---------------~v~~l~~~lGI~ 206 (319)
+.+++||.++..+.. ++.++.+.. +..|++.||+++++||.+|- ....+++..|+.
T Consensus 7 ~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~ 86 (181)
T COG0241 7 ALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVK 86 (181)
T ss_pred EEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCc
Confidence 456789999888877 665554443 48899999999999997542 123445666754
Q ss_pred --EE---------EccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 207 --VI---------RHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 207 --~I---------~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
-+ .+.++||.++ +..+++++++++++.+||||++ +|+.+|.++|+.++++.
T Consensus 87 id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~-~Dlq~a~n~gi~~~~~~ 149 (181)
T COG0241 87 IDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRL-TDLQAAENAGIKGVLVL 149 (181)
T ss_pred cceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcH-HHHHHHHHCCCCceEEE
Confidence 12 1478999998 8999999999999999999998 89999999999999884
No 55
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.05 E-value=7.1e-10 Score=99.32 Aligned_cols=82 Identities=17% Similarity=0.115 Sum_probs=68.8
Q ss_pred HHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-----EE-E---ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHH
Q 020934 176 AELQRRGFKGLYEYDNDASKARKLEGKIGIK-----VI-R---HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIV 245 (319)
Q Consensus 176 ~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-----~I-~---~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIl 245 (319)
+.|+..+++++|+||.....+..+++.+|+. .+ . .+..||.|. +..+++++|++|++++||||+. .||.
T Consensus 95 ~~L~~L~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~igDs~-~di~ 173 (221)
T PRK10563 95 ALLESITVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCILVDDSS-AGAQ 173 (221)
T ss_pred HHHHHcCCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeEEEeCcH-hhHH
Confidence 3444457999999998878888887877773 22 2 356899998 8999999999999999999998 7999
Q ss_pred hHHHcCCeEEEEc
Q 020934 246 YGNRNGFLTILTE 258 (319)
Q Consensus 246 gAn~aGm~TILV~ 258 (319)
+|+++||.+|++.
T Consensus 174 aA~~aG~~~i~~~ 186 (221)
T PRK10563 174 SGIAAGMEVFYFC 186 (221)
T ss_pred HHHHCCCEEEEEC
Confidence 9999999999995
No 56
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=8.5e-10 Score=104.59 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=71.0
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCC-------cEEE---ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGI-------KVIR---HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFT 242 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI-------~~I~---~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~T 242 (319)
-++.|+++|++++|+||.....+..+++.++. .++. ....||.|. +.++++++|++|++++||||.. .
T Consensus 152 lL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~-~ 230 (286)
T PLN02779 152 LMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSV-I 230 (286)
T ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCH-H
Confidence 57899999999999999988877777665521 1221 246799997 8899999999999999999998 7
Q ss_pred hHHhHHHcCCeEEEEc
Q 020934 243 DIVYGNRNGFLTILTE 258 (319)
Q Consensus 243 DIlgAn~aGm~TILV~ 258 (319)
||.+|+++||.+|+|.
T Consensus 231 Di~aA~~aG~~~i~v~ 246 (286)
T PLN02779 231 GLQAAKAAGMRCIVTK 246 (286)
T ss_pred hHHHHHHcCCEEEEEc
Confidence 9999999999999994
No 57
>PLN02940 riboflavin kinase
Probab=99.03 E-value=9.9e-10 Score=108.43 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=72.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHH-HhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEG-KIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTD 243 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~-~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TD 243 (319)
.++.|+++|++++|+||+....+...++ .+|+. .+. ....||+|. +..+++++|++|++++||||+. .|
T Consensus 101 lL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~VGDs~-~D 179 (382)
T PLN02940 101 LIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLVIEDSL-PG 179 (382)
T ss_pred HHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEEEeCCH-HH
Confidence 5899999999999999998877776655 56763 332 246799998 8999999999999999999998 79
Q ss_pred HHhHHHcCCeEEEEc
Q 020934 244 IVYGNRNGFLTILTE 258 (319)
Q Consensus 244 IlgAn~aGm~TILV~ 258 (319)
|.+|+++||.+|+|.
T Consensus 180 i~aA~~aGi~~I~v~ 194 (382)
T PLN02940 180 VMAGKAAGMEVIAVP 194 (382)
T ss_pred HHHHHHcCCEEEEEC
Confidence 999999999999995
No 58
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.02 E-value=1.3e-09 Score=100.38 Aligned_cols=84 Identities=11% Similarity=0.110 Sum_probs=69.7
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHh---CCc-----EE-EccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKI---GIK-----VI-RHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTD 243 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~l---GI~-----~I-~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TD 243 (319)
.++.|+++|++++|+||......+.+.+.+ ++. ++ .....||.+. +.++++++|++|++++||||+. .|
T Consensus 103 ~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e~lfVgDs~-~D 181 (220)
T TIGR01691 103 ALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPREILFLSDII-NE 181 (220)
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhHEEEEeCCH-HH
Confidence 689999999999999998876666665554 332 11 1235799998 8999999999999999999997 79
Q ss_pred HHhHHHcCCeEEEEc
Q 020934 244 IVYGNRNGFLTILTE 258 (319)
Q Consensus 244 IlgAn~aGm~TILV~ 258 (319)
|.+|+++||.+|+|.
T Consensus 182 i~AA~~AG~~ti~v~ 196 (220)
T TIGR01691 182 LDAARKAGLHTGQLV 196 (220)
T ss_pred HHHHHHcCCEEEEEE
Confidence 999999999999995
No 59
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.02 E-value=1.5e-09 Score=102.01 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=73.2
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
.++.|+++|++++|+||+....++.+++.+|+. .+. ....||.+. ++.+++++|++|++++||||+. .||
T Consensus 109 ~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~IGD~~-~Di 187 (272)
T PRK13223 109 TLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLFVGDSR-SDV 187 (272)
T ss_pred HHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEEECCCH-HHH
Confidence 579999999999999998887788888888874 232 245799997 8899999999999999999996 899
Q ss_pred HhHHHcCCeEEEEc
Q 020934 245 VYGNRNGFLTILTE 258 (319)
Q Consensus 245 lgAn~aGm~TILV~ 258 (319)
.+|+++||.+++|.
T Consensus 188 ~aA~~aGi~~i~v~ 201 (272)
T PRK13223 188 LAAKAAGVQCVALS 201 (272)
T ss_pred HHHHHCCCeEEEEe
Confidence 99999999999994
No 60
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.01 E-value=1.5e-09 Score=96.65 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=73.6
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
-++.|++.|++++++||+....+..+++.+|+. .+. ....||.|. +..+++++++++++++||||+. +||
T Consensus 101 ~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~igD~~-~Di 179 (226)
T PRK13222 101 TLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLFVGDSR-NDI 179 (226)
T ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEEECCCH-HHH
Confidence 579999999999999999888888888888874 221 236799987 8899999999999999999997 899
Q ss_pred HhHHHcCCeEEEEc
Q 020934 245 VYGNRNGFLTILTE 258 (319)
Q Consensus 245 lgAn~aGm~TILV~ 258 (319)
.+|+++|+.+|+|.
T Consensus 180 ~~a~~~g~~~i~v~ 193 (226)
T PRK13222 180 QAARAAGCPSVGVT 193 (226)
T ss_pred HHHHHCCCcEEEEC
Confidence 99999999999995
No 61
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.00 E-value=1.4e-09 Score=106.66 Aligned_cols=126 Identities=17% Similarity=0.258 Sum_probs=88.9
Q ss_pred ehhHHHHHHHHHHccccccccceeeeeeeeccCCcccCcccc-CCcch-hhHHHHHHcCCcEEEEecCCHHHHHHHHHHh
Q 020934 126 CTNMWWSQLKAALGQRINVEGIVSSTVVFAKDRHLALPHVTV-PDIRY-IDWAELQRRGFKGLYEYDNDASKARKLEGKI 203 (319)
Q Consensus 126 iG~~WW~~l~~~lg~~~n~~gI~~~a~vL~rd~~l~~P~~~v-~~i~~-i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~l 203 (319)
.-..-|.|+.+++...+. .|.-. ..+..| |..++ ++..- ..|+.|+++|++++|+||+....+..+++.+
T Consensus 150 ~~~~~~~dv~~av~~~h~-~g~lk--~~v~~d-----p~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l 221 (343)
T TIGR02244 150 DYRQIYQDVRDALDWVHR-KGSLK--KKVMEN-----PEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYL 221 (343)
T ss_pred CHHHHHHHHHHHHHHhcc-cchHH--HHHHHC-----HHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence 445668888887665544 33211 111222 43333 22221 2479999999999999999999998888886
Q ss_pred -C-------Cc----EEEccCCCCh---------------------H------------H-HHHHHHHhCCCCCceEEEc
Q 020934 204 -G-------IK----VIRHRVKKPA---------------------G------------T-AEEIEKHFGCQSSQLIMVG 237 (319)
Q Consensus 204 -G-------I~----~I~~~akKP~---------------------~------------~-f~~ALk~lgv~p~e~vmVG 237 (319)
| +. +|..+++||. . + .....+.+|+++++++|||
T Consensus 222 ~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvG 301 (343)
T TIGR02244 222 LGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFG 301 (343)
T ss_pred hCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEEC
Confidence 6 32 4445666661 0 1 3456677899999999999
Q ss_pred CCchhhHHhHH-HcCCeEEEEcc
Q 020934 238 DRPFTDIVYGN-RNGFLTILTEP 259 (319)
Q Consensus 238 Drl~TDIlgAn-~aGm~TILV~P 259 (319)
|++++||++|+ .+|+.||+|.|
T Consensus 302 D~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 302 DHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred CcchHHHHhhHHhcCcEEEEEch
Confidence 99999999999 99999999987
No 62
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.00 E-value=2e-09 Score=101.86 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=70.9
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE-ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR-HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYG 247 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~-~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgA 247 (319)
.++.|+++|++++|+||+....+..+++.+|+. .+. ....+|.+. +..++++++++|++++||||+. .||.+|
T Consensus 150 ~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IGDs~-~Di~aA 228 (273)
T PRK13225 150 LLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVGDET-RDVEAA 228 (273)
T ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEECCCH-HHHHHH
Confidence 579999999999999999999999999999985 222 222233344 7889999999999999999997 799999
Q ss_pred HHcCCeEEEEc
Q 020934 248 NRNGFLTILTE 258 (319)
Q Consensus 248 n~aGm~TILV~ 258 (319)
+++||.+|+|.
T Consensus 229 ~~AG~~~I~v~ 239 (273)
T PRK13225 229 RQVGLIAVAVT 239 (273)
T ss_pred HHCCCeEEEEe
Confidence 99999999995
No 63
>PLN02811 hydrolase
Probab=99.00 E-value=1.5e-09 Score=98.07 Aligned_cols=84 Identities=12% Similarity=0.182 Sum_probs=66.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHH-HHHHHhCC----cEEE------ccCCCChHH-HHHHHHHhC---CCCCceEEEcC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKAR-KLEGKIGI----KVIR------HRVKKPAGT-AEEIEKHFG---CQSSQLIMVGD 238 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~-~l~~~lGI----~~I~------~~akKP~~~-f~~ALk~lg---v~p~e~vmVGD 238 (319)
.++.|+++|++++|+||.....+. .+.+..++ ..+. ....||.|. +..+++++| ++|++++||||
T Consensus 86 ~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~v~IgD 165 (220)
T PLN02811 86 LVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPGKVLVFED 165 (220)
T ss_pred HHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCccceEEEec
Confidence 579999999999999988754333 23322233 2221 124699997 899999997 99999999999
Q ss_pred CchhhHHhHHHcCCeEEEEc
Q 020934 239 RPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 239 rl~TDIlgAn~aGm~TILV~ 258 (319)
+. .||.+|+++||.+|+|.
T Consensus 166 s~-~di~aA~~aG~~~i~v~ 184 (220)
T PLN02811 166 AP-SGVEAAKNAGMSVVMVP 184 (220)
T ss_pred cH-hhHHHHHHCCCeEEEEe
Confidence 98 79999999999999995
No 64
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.99 E-value=7.4e-10 Score=102.13 Aligned_cols=154 Identities=14% Similarity=0.062 Sum_probs=105.1
Q ss_pred cccccccccCCCCCcCCCCCccccccccccccccCCCCCceeEehhHHHHHHHHHHccccccccceeeeeeeeccCCccc
Q 020934 83 HTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRYNKDKYWTVLCTNMWWSQLKAALGQRINVEGIVSSTVVFAKDRHLAL 162 (319)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~g~~~liiG~~WW~~l~~~lg~~~n~~gI~~~a~vL~rd~~l~~ 162 (319)
.|..+||+-+.+++-||.-|+.+. +.+..-+| .+++.+.-..++-. +..-.+.++++..-
T Consensus 59 rL~rlgf~v~eeei~tsl~aa~~~------~~~~~lrP--~l~v~d~a~~dF~g-------idTs~pn~VVigla----- 118 (262)
T KOG3040|consen 59 RLQRLGFDVSEEEIFTSLPAARQY------LEENQLRP--YLIVDDDALEDFDG-------IDTSDPNCVVIGLA----- 118 (262)
T ss_pred HHHHhCCCccHHHhcCccHHHHHH------HHhcCCCc--eEEEcccchhhCCC-------ccCCCCCeEEEecC-----
Confidence 788999999999999999999998 55544444 34455544332211 11112233333311
Q ss_pred CccccCCcchhhHHHHHHcCCcEEEEecCC-------------HHHHHHHHHHhCCcEEEccCCCChHH-HHHHHHHhCC
Q 020934 163 PHVTVPDIRYIDWAELQRRGFKGLYEYDND-------------ASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGC 228 (319)
Q Consensus 163 P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~-------------~~~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk~lgv 228 (319)
|..+-...-.-.+.-|.+.--..+|..++. +..+..++=..|+... ..+||.+. |+.||+-+|+
T Consensus 119 pe~F~y~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~--vvGKP~~~fFe~al~~~gv 196 (262)
T KOG3040|consen 119 PEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEAT--VVGKPSPFFFESALQALGV 196 (262)
T ss_pred cccccHHHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEE--EecCCCHHHHHHHHHhcCC
Confidence 222111111123677777765666666652 4456666666787754 26799998 8899999999
Q ss_pred CCCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 229 QSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 229 ~p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
+|+++|||||.+..||.||.+.||..|+|+
T Consensus 197 ~p~~aVMIGDD~~dDvgGAq~~GMrgilVk 226 (262)
T KOG3040|consen 197 DPEEAVMIGDDLNDDVGGAQACGMRGILVK 226 (262)
T ss_pred ChHHheEEccccccchhhHhhhcceeEEee
Confidence 999999999999999999999999999995
No 65
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.98 E-value=2.4e-09 Score=92.70 Aligned_cols=82 Identities=11% Similarity=0.082 Sum_probs=72.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
.++.|+++|++++|+||+....++.+++.+|+..+. ...||.+. +.++++++|+++++++||||.. +|+.+++.+|+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~-~~~~~k~~~~~~~~~~~~~~~~~~~~vGDs~-~D~~~~~~ag~ 113 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLY-QGQSNKLIAFSDILEKLALAPENVAYIGDDL-IDWPVMEKVGL 113 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEE-ecccchHHHHHHHHHHcCCCHHHEEEECCCH-HHHHHHHHCCC
Confidence 589999999999999999988889999999998543 24578886 8899999999999999999998 89999999999
Q ss_pred eEEEEc
Q 020934 253 LTILTE 258 (319)
Q Consensus 253 ~TILV~ 258 (319)
. +.|.
T Consensus 114 ~-~~v~ 118 (154)
T TIGR01670 114 S-VAVA 118 (154)
T ss_pred e-EecC
Confidence 5 7774
No 66
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.94 E-value=4.5e-09 Score=93.38 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=71.3
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
.++.|+++|++++|+||+....+..+++.+|+..+.. ..++.+. +.++++++|+++++++||||+. +|+.+|+++|+
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~-g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~-~D~~~a~~aG~ 133 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQ-GQSNKLIAFSDLLEKLAIAPEQVAYIGDDL-IDWPVMEKVGL 133 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeec-CCCcHHHHHHHHHHHhCCCHHHEEEECCCH-HHHHHHHHCCC
Confidence 5789999999999999999899999999999986543 4566665 8899999999999999999998 89999999999
Q ss_pred eEEEEc
Q 020934 253 LTILTE 258 (319)
Q Consensus 253 ~TILV~ 258 (319)
. +.|.
T Consensus 134 ~-~~v~ 138 (183)
T PRK09484 134 S-VAVA 138 (183)
T ss_pred e-EecC
Confidence 8 4453
No 67
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.92 E-value=3.4e-09 Score=93.83 Aligned_cols=77 Identities=23% Similarity=0.185 Sum_probs=66.1
Q ss_pred hhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchh
Q 020934 172 YIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFT 242 (319)
Q Consensus 172 ~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~T 242 (319)
...++.|+++|++++|+||+....++.+++.+|+. .+. ... ||.|. +..+++++|++|++++||||+. .
T Consensus 112 ~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vGD~~-~ 189 (197)
T TIGR01548 112 KGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMVGDTV-D 189 (197)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEEeCCH-H
Confidence 34579999999999999999989999999999985 221 124 99997 8899999999999999999998 7
Q ss_pred hHHhHHHc
Q 020934 243 DIVYGNRN 250 (319)
Q Consensus 243 DIlgAn~a 250 (319)
||.+|+++
T Consensus 190 Di~aA~~a 197 (197)
T TIGR01548 190 DIITGRKA 197 (197)
T ss_pred HHHHHHhC
Confidence 99999875
No 68
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.91 E-value=3.2e-09 Score=97.07 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=75.3
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----E-E---EccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----V-I---RHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~-I---~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
-++.|+++|++++++|++....++.+++.+|+. . + .....||.|. |.+|+++||++|++||+|.|.. +.|
T Consensus 94 ~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~CvviEDs~-~Gi 172 (221)
T COG0637 94 LLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECVVVEDSP-AGI 172 (221)
T ss_pred HHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeEEEecch-hHH
Confidence 379999999999999999888899998888874 1 1 1246699998 8999999999999999999998 799
Q ss_pred HhHHHcCCeEEEEcc
Q 020934 245 VYGNRNGFLTILTEP 259 (319)
Q Consensus 245 lgAn~aGm~TILV~P 259 (319)
.+|++|||.+|.|..
T Consensus 173 ~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 173 QAAKAAGMRVVGVPA 187 (221)
T ss_pred HHHHHCCCEEEEecC
Confidence 999999999999975
No 69
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.88 E-value=4e-09 Score=94.26 Aligned_cols=84 Identities=14% Similarity=0.030 Sum_probs=63.5
Q ss_pred hHHHHHHcCCcEEEEecC-CHHHHHHHHHHhCCc-------------EEE--ccC--CCChHHH-HHHHHHh--CCCCCc
Q 020934 174 DWAELQRRGFKGLYEYDN-DASKARKLEGKIGIK-------------VIR--HRV--KKPAGTA-EEIEKHF--GCQSSQ 232 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn-~~~~v~~l~~~lGI~-------------~I~--~~a--kKP~~~f-~~ALk~l--gv~p~e 232 (319)
.++.|+++|++++++||+ ....++.+++.+|+. .+. ... .||.+.+ ..+.+.+ |++|++
T Consensus 53 lL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e 132 (174)
T TIGR01685 53 VLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQ 132 (174)
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHH
Confidence 589999999999999998 667777888888864 121 112 2333332 3333444 699999
Q ss_pred eEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 233 LIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 233 ~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
++||||+. .||.+|+++|+.++++.
T Consensus 133 ~l~VgDs~-~di~aA~~aGi~~i~v~ 157 (174)
T TIGR01685 133 ILFFDDRT-DNVREVWGYGVTSCYCP 157 (174)
T ss_pred eEEEcChh-HhHHHHHHhCCEEEEcC
Confidence 99999999 79999999999999994
No 70
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.85 E-value=1e-08 Score=89.67 Aligned_cols=78 Identities=24% Similarity=0.252 Sum_probs=69.1
Q ss_pred hhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-EEEccCC--CChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHH
Q 020934 173 IDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK-VIRHRVK--KPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGN 248 (319)
Q Consensus 173 i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-~I~~~ak--KP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn 248 (319)
..++.|+++|++++++|+-+...+..+.+.+||. .+..+.. ||.++ |.++++.+++++++++||||.+ +|+.+++
T Consensus 134 ~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~-nD~~al~ 212 (215)
T PF00702_consen 134 EALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDGV-NDAPALK 212 (215)
T ss_dssp HHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESSG-GHHHHHH
T ss_pred hhhhhhhccCcceeeeeccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEccCH-HHHHHHH
Confidence 3689999999999999988888899999999994 3333455 99998 8899999999999999999999 9999999
Q ss_pred HcC
Q 020934 249 RNG 251 (319)
Q Consensus 249 ~aG 251 (319)
+||
T Consensus 213 ~Ag 215 (215)
T PF00702_consen 213 AAG 215 (215)
T ss_dssp HSS
T ss_pred hCc
Confidence 997
No 71
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.84 E-value=1.2e-08 Score=90.54 Aligned_cols=82 Identities=16% Similarity=0.155 Sum_probs=72.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
.+..|+++|++++|+||+....++.+++.+|+..+. ...||.|. +..+++++|+++++++||||.. +|+.+++.+|+
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f-~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~-nDi~~~~~ag~ 119 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFH-EGIKKKTEPYAQMLEEMNISDAEVCYVGDDL-VDLSMMKRVGL 119 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEE-ecCCCCHHHHHHHHHHcCcCHHHEEEECCCH-HHHHHHHHCCC
Confidence 589999999999999999999999999999998543 24588887 8999999999999999999998 89999999998
Q ss_pred eEEEE
Q 020934 253 LTILT 257 (319)
Q Consensus 253 ~TILV 257 (319)
....-
T Consensus 120 ~~am~ 124 (169)
T TIGR02726 120 AVAVG 124 (169)
T ss_pred eEECc
Confidence 65544
No 72
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.84 E-value=1.4e-08 Score=111.94 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=75.0
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-----EEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK-----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTD 243 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-----~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TD 243 (319)
.+++|+++|++++|+||.....++.+++.+|+. .+. ....||.|. |.++++++|++|++++||||.. .|
T Consensus 169 lL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~IgDs~-~D 247 (1057)
T PLN02919 169 LITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVIEDAL-AG 247 (1057)
T ss_pred HHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEEcCCH-HH
Confidence 479999999999999999988888888888873 221 356799998 8899999999999999999998 79
Q ss_pred HHhHHHcCCeEEEEcc
Q 020934 244 IVYGNRNGFLTILTEP 259 (319)
Q Consensus 244 IlgAn~aGm~TILV~P 259 (319)
|.+|+++||.+|+|..
T Consensus 248 i~AA~~aGm~~I~v~~ 263 (1057)
T PLN02919 248 VQAARAAGMRCIAVTT 263 (1057)
T ss_pred HHHHHHcCCEEEEECC
Confidence 9999999999999963
No 73
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.80 E-value=2.7e-08 Score=84.04 Aligned_cols=75 Identities=21% Similarity=0.192 Sum_probs=61.6
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHh-CC--cEEE----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKI-GI--KVIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIV 245 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~l-GI--~~I~----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIl 245 (319)
.++.|+++|++++++||.....+..+++.+ +- ..+. .. .||.+. +.++++++|++| +++||||+. .||.
T Consensus 72 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~iGDs~-~Di~ 148 (154)
T TIGR01549 72 LLKRLKEAGIKLGIISNGSLRAQKLLLRKHLGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVLHVGDNL-NDIE 148 (154)
T ss_pred HHHHHHHCcCeEEEEeCCchHHHHHHHHHHHHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEEEEeCCH-HHHH
Confidence 579999999999999999887777666663 21 1221 23 799997 889999999999 999999995 8999
Q ss_pred hHHHcC
Q 020934 246 YGNRNG 251 (319)
Q Consensus 246 gAn~aG 251 (319)
+|+++|
T Consensus 149 aa~~aG 154 (154)
T TIGR01549 149 GARNAG 154 (154)
T ss_pred HHHHcc
Confidence 999998
No 74
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.79 E-value=6e-08 Score=77.09 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=69.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-----EEE-c--cCC----------------CChHH-HHHHHHHhCC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK-----VIR-H--RVK----------------KPAGT-AEEIEKHFGC 228 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-----~I~-~--~ak----------------KP~~~-f~~ALk~lgv 228 (319)
.++.|+++|++++++|+.....++.+++.+|+. ++. . ... ||.+. +..+++.++.
T Consensus 32 ~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (139)
T cd01427 32 ALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGV 111 (139)
T ss_pred HHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCC
Confidence 479999999999999999988888888888872 221 1 111 88876 7889999999
Q ss_pred CCCceEEEcCCchhhHHhHHHcCCeEEEE
Q 020934 229 QSSQLIMVGDRPFTDIVYGNRNGFLTILT 257 (319)
Q Consensus 229 ~p~e~vmVGDrl~TDIlgAn~aGm~TILV 257 (319)
+++++++|||+. +|+.+|.++|+.+|+|
T Consensus 112 ~~~~~~~igD~~-~d~~~~~~~g~~~i~v 139 (139)
T cd01427 112 DPEEVLMVGDSL-NDIEMAKAAGGLGVAV 139 (139)
T ss_pred ChhhEEEeCCCH-HHHHHHHHcCCceeeC
Confidence 999999999998 8999999999999985
No 75
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.78 E-value=2.9e-08 Score=87.53 Aligned_cols=82 Identities=10% Similarity=0.078 Sum_probs=61.2
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc---------EEEccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK---------VIRHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTD 243 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~---------~I~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TD 243 (319)
.++.|+++ ++++++||........+.+.+|+. ++.....||+|. +..+++++| |++++||||+. +|
T Consensus 82 ~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~--~~~~v~vgDs~-~d 157 (197)
T PHA02597 82 VINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG--DRVVCFVDDLA-HN 157 (197)
T ss_pred HHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC--CCcEEEeCCCH-HH
Confidence 58999887 467777775544333344444442 222345677776 889999999 89999999998 79
Q ss_pred HHhHHHc--CCeEEEEcc
Q 020934 244 IVYGNRN--GFLTILTEP 259 (319)
Q Consensus 244 IlgAn~a--Gm~TILV~P 259 (319)
|.+|+++ ||++|+|..
T Consensus 158 i~aA~~a~~Gi~~i~~~~ 175 (197)
T PHA02597 158 LDAAHEALSQLPVIHMLR 175 (197)
T ss_pred HHHHHHHHcCCcEEEecc
Confidence 9999999 999999953
No 76
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.77 E-value=3.2e-08 Score=88.40 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=68.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEE---------------c---cCCCChHH-HHHHHHHhCCCCCceE
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIR---------------H---RVKKPAGT-AEEIEKHFGCQSSQLI 234 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~---------------~---~akKP~~~-f~~ALk~lgv~p~e~v 234 (319)
-++.|+++|++++|+||.....++.+++.+|+..+. . ...+|.+. +.++++++++++++++
T Consensus 93 ~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~i 172 (219)
T TIGR00338 93 LVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKEGISPENTV 172 (219)
T ss_pred HHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHcCCCHHHEE
Confidence 579999999999999998888888888999885321 0 11345665 7889999999999999
Q ss_pred EEcCCchhhHHhHHHcCCeEEEEcc
Q 020934 235 MVGDRPFTDIVYGNRNGFLTILTEP 259 (319)
Q Consensus 235 mVGDrl~TDIlgAn~aGm~TILV~P 259 (319)
||||+. +|+.+|+++|+.. .+.|
T Consensus 173 ~iGDs~-~Di~aa~~ag~~i-~~~~ 195 (219)
T TIGR00338 173 AVGDGA-NDLSMIKAAGLGI-AFNA 195 (219)
T ss_pred EEECCH-HHHHHHHhCCCeE-EeCC
Confidence 999997 8999999999964 4443
No 77
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.77 E-value=2.6e-08 Score=93.45 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=70.0
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcE-----EE-----------ccCCCChHH-HHHHHHHhCC-CCCceEE
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKV-----IR-----------HRVKKPAGT-AEEIEKHFGC-QSSQLIM 235 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~-----I~-----------~~akKP~~~-f~~ALk~lgv-~p~e~vm 235 (319)
.++.|+++|++++++||+.....+.+++.||+.- +. ....||.|. ..+++++++. ++++++|
T Consensus 195 ~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~ 274 (300)
T PHA02530 195 LVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLA 274 (300)
T ss_pred HHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEE
Confidence 3689999999999999998887777777766541 11 124699997 7889999988 6799999
Q ss_pred EcCCchhhHHhHHHcCCeEEEEc
Q 020934 236 VGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 236 VGDrl~TDIlgAn~aGm~TILV~ 258 (319)
|||+. +||.+|+++||.+|+|.
T Consensus 275 vgD~~-~d~~~a~~~Gi~~i~v~ 296 (300)
T PHA02530 275 VDDRD-QVVDMWRRIGLECWQVA 296 (300)
T ss_pred EcCcH-HHHHHHHHhCCeEEEec
Confidence 99998 79999999999999995
No 78
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.72 E-value=5.2e-08 Score=97.88 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=67.9
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEEc---cCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIRH---RVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIV 245 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~~---~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIl 245 (319)
.++.|+++|++++|+||+....++.+++.+|+. .+.. ...||.|. +..++++++ |++++||||+. .||.
T Consensus 338 ~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~--~~~~v~VGDs~-~Di~ 414 (459)
T PRK06698 338 IFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYD--IKEAAVVGDRL-SDIN 414 (459)
T ss_pred HHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcC--cceEEEEeCCH-HHHH
Confidence 579999999999999999999999888999874 2211 12355555 778888865 68999999998 8999
Q ss_pred hHHHcCCeEEEEc
Q 020934 246 YGNRNGFLTILTE 258 (319)
Q Consensus 246 gAn~aGm~TILV~ 258 (319)
+|+++||.+|+|.
T Consensus 415 aAk~AG~~~I~v~ 427 (459)
T PRK06698 415 AAKDNGLIAIGCN 427 (459)
T ss_pred HHHHCCCeEEEEe
Confidence 9999999999995
No 79
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.57 E-value=2.6e-07 Score=80.61 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=66.6
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEE--------ccCCCCh----------HH-HHHHHHHhCCCCCceE
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIR--------HRVKKPA----------GT-AEEIEKHFGCQSSQLI 234 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~--------~~akKP~----------~~-f~~ALk~lgv~p~e~v 234 (319)
.++.|+++|++++|+||.....++.+++.+|+..+. .+..||. +. +.++++++|+++++++
T Consensus 88 ~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~~~~~~~~~i 167 (201)
T TIGR01491 88 LVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKRELNPSLTETV 167 (201)
T ss_pred HHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHHhCCCHHHEE
Confidence 589999999999999999888899999999986331 1112222 22 6677888999999999
Q ss_pred EEcCCchhhHHhHHHcCCeEEEEcc
Q 020934 235 MVGDRPFTDIVYGNRNGFLTILTEP 259 (319)
Q Consensus 235 mVGDrl~TDIlgAn~aGm~TILV~P 259 (319)
||||.. +|+.+|..+|+..+ +.|
T Consensus 168 ~iGDs~-~D~~~a~~ag~~~a-~~~ 190 (201)
T TIGR01491 168 AVGDSK-NDLPMFEVADISIS-LGD 190 (201)
T ss_pred EEcCCH-hHHHHHHhcCCeEE-ECC
Confidence 999997 79999999999554 444
No 80
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.49 E-value=8.1e-07 Score=83.07 Aligned_cols=78 Identities=21% Similarity=0.109 Sum_probs=61.9
Q ss_pred hHHHHHHcCCcEEEEecC----CHHHHHHHHHHhCCc----EEEc----cCCCChHHHHHHHHHhCCCCCceEEEcCCch
Q 020934 174 DWAELQRRGFKGLYEYDN----DASKARKLEGKIGIK----VIRH----RVKKPAGTAEEIEKHFGCQSSQLIMVGDRPF 241 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn----~~~~v~~l~~~lGI~----~I~~----~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~ 241 (319)
-++.|+++|++++|+||+ ....++.+++.+|++ ++.. ...||.+. .+++++|+ ++||||+.
T Consensus 122 lL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~--~~l~~~~i----~i~vGDs~- 194 (237)
T TIGR01672 122 LIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT--QWIQDKNI----RIHYGDSD- 194 (237)
T ss_pred HHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH--HHHHhCCC----eEEEeCCH-
Confidence 579999999999999998 455678888899996 2221 22466653 46677775 79999998
Q ss_pred hhHHhHHHcCCeEEEEc
Q 020934 242 TDIVYGNRNGFLTILTE 258 (319)
Q Consensus 242 TDIlgAn~aGm~TILV~ 258 (319)
.||.+|+++|+.+|.|.
T Consensus 195 ~DI~aAk~AGi~~I~V~ 211 (237)
T TIGR01672 195 NDITAAKEAGARGIRIL 211 (237)
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 79999999999999994
No 81
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.48 E-value=1.8e-07 Score=80.58 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=55.4
Q ss_pred cEEEEecCCHHHHHHHHHHhCCc-----EEE---ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHc
Q 020934 184 KGLYEYDNDASKARKLEGKIGIK-----VIR---HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRN 250 (319)
Q Consensus 184 kl~I~SNn~~~~v~~l~~~lGI~-----~I~---~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~a 250 (319)
+++|+||.....+..+++.+|+. ++. .+..||.|. |..+++++|++|++++||||+. .||.||+++
T Consensus 101 ~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~vgD~~-~Di~~A~~~ 175 (175)
T TIGR01493 101 RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMVAAHQ-WDLIGARKF 175 (175)
T ss_pred HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeEecCh-hhHHHHhcC
Confidence 36889999888888888888875 221 357899998 8999999999999999999996 799999864
No 82
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.48 E-value=5.4e-07 Score=86.65 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=67.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHH----hCCc--EE-EccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGK----IGIK--VI-RHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIV 245 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~----lGI~--~I-~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIl 245 (319)
.++.|+++|++++|+|+|....+..+++. +|+. +. .....||.+. +.++++++|+.++++|||||+. .|+.
T Consensus 39 ~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~-~d~~ 117 (320)
T TIGR01686 39 KIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNP-AERA 117 (320)
T ss_pred HHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCH-HHHH
Confidence 57999999999999999999999988888 7775 21 1234689997 8999999999999999999999 5999
Q ss_pred hHHHcCCe
Q 020934 246 YGNRNGFL 253 (319)
Q Consensus 246 gAn~aGm~ 253 (319)
++++++-.
T Consensus 118 ~~~~~lp~ 125 (320)
T TIGR01686 118 NVKITLPV 125 (320)
T ss_pred HHHHHCCC
Confidence 99997653
No 83
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.45 E-value=7.3e-07 Score=92.01 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=65.0
Q ss_pred hHHHHHHcCCcEEEEecCCH------------HHHHHHHHHhCCcE--EE----ccCCCChHH-HHHHHHHhC----CCC
Q 020934 174 DWAELQRRGFKGLYEYDNDA------------SKARKLEGKIGIKV--IR----HRVKKPAGT-AEEIEKHFG----CQS 230 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~------------~~v~~l~~~lGI~~--I~----~~akKP~~~-f~~ALk~lg----v~p 230 (319)
.|+.|++.||+++|+||+.+ ..+..+++.+|+++ +. ...+||.++ +..++++++ +++
T Consensus 205 ~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~ 284 (526)
T TIGR01663 205 KLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQE 284 (526)
T ss_pred HHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCH
Confidence 37999999999999999876 34678889999873 22 246799998 788999884 899
Q ss_pred CceEEEcCCchhhHHhHHHcCC
Q 020934 231 SQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 231 ~e~vmVGDrl~TDIlgAn~aGm 252 (319)
++++||||.. .|+.+|+++|.
T Consensus 285 ~~S~~VGDaa-gr~~~g~~ag~ 305 (526)
T TIGR01663 285 DDCFFVGDAA-GRPANGKAAGK 305 (526)
T ss_pred HHeEEeCCcc-cchHHHHhcCC
Confidence 9999999998 79998888876
No 84
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.44 E-value=6.8e-07 Score=75.20 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=58.4
Q ss_pred hHHHHHHcCCcEEEEecC-CHHHHHHHHHHhC-------Cc----EEEccCCCChHH-HHHHHHHhC--CCCCceEEEcC
Q 020934 174 DWAELQRRGFKGLYEYDN-DASKARKLEGKIG-------IK----VIRHRVKKPAGT-AEEIEKHFG--CQSSQLIMVGD 238 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn-~~~~v~~l~~~lG-------I~----~I~~~akKP~~~-f~~ALk~lg--v~p~e~vmVGD 238 (319)
.++.|+++|++++++||+ ....+..+++.++ +. .+..+..||.|. +.++++++| ++|++++||||
T Consensus 37 ~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~~~p~~~l~igD 116 (128)
T TIGR01681 37 KLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGVLKPKSILFVDD 116 (128)
T ss_pred HHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCCCCcceEEEECC
Confidence 479999999999999999 6666667777777 32 222344678887 899999999 99999999999
Q ss_pred CchhhHHhHH
Q 020934 239 RPFTDIVYGN 248 (319)
Q Consensus 239 rl~TDIlgAn 248 (319)
+. .|+...+
T Consensus 117 s~-~n~~~~~ 125 (128)
T TIGR01681 117 RP-DNNEEVD 125 (128)
T ss_pred CH-hHHHHHH
Confidence 98 5766544
No 85
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.40 E-value=1.7e-06 Score=80.98 Aligned_cols=78 Identities=19% Similarity=0.115 Sum_probs=60.0
Q ss_pred hHHHHHHcCCcEEEEecCC----HHHHHHHHHHhCCc------EEEc--cCCCChHHHHHHHHHhCCCCCceEEEcCCch
Q 020934 174 DWAELQRRGFKGLYEYDND----ASKARKLEGKIGIK------VIRH--RVKKPAGTAEEIEKHFGCQSSQLIMVGDRPF 241 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~----~~~v~~l~~~lGI~------~I~~--~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~ 241 (319)
-++.|+++|++++++||.. ...++.+++.+|++ ++.. ...||.+. .+++++++ ++||||+.
T Consensus 122 lL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~--~~l~~~~i----~I~IGDs~- 194 (237)
T PRK11009 122 LIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKT--QWLKKKNI----RIFYGDSD- 194 (237)
T ss_pred HHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHH--HHHHhcCC----eEEEcCCH-
Confidence 5799999999999999853 44567787889993 2322 12466653 35666665 99999998
Q ss_pred hhHHhHHHcCCeEEEEc
Q 020934 242 TDIVYGNRNGFLTILTE 258 (319)
Q Consensus 242 TDIlgAn~aGm~TILV~ 258 (319)
.||.+|++||+.+|.|.
T Consensus 195 ~Di~aA~~AGi~~I~v~ 211 (237)
T PRK11009 195 NDITAAREAGARGIRIL 211 (237)
T ss_pred HHHHHHHHcCCcEEEEe
Confidence 79999999999999994
No 86
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.40 E-value=3.1e-07 Score=78.92 Aligned_cols=81 Identities=14% Similarity=-0.007 Sum_probs=65.8
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc--E---EE----ccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK--V---IR----HRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~--~---I~----~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
-|+.|+ ++++++|+|++....++.+++.+|+. + +. ....||. +.++++++|++|++++||||+. .|+
T Consensus 53 ~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~--~~k~l~~l~~~p~~~i~i~Ds~-~~~ 128 (148)
T smart00577 53 FLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK--YVKDLSLLGRDLSNVIIIDDSP-DSW 128 (148)
T ss_pred HHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCe--EeecHHHcCCChhcEEEEECCH-HHh
Confidence 578898 67999999999999999988998873 2 21 2346776 7889999999999999999998 799
Q ss_pred HhHHHcCCeEEEEccCc
Q 020934 245 VYGNRNGFLTILTEPLS 261 (319)
Q Consensus 245 lgAn~aGm~TILV~Pi~ 261 (319)
.+|.++|| .|.|+.
T Consensus 129 ~aa~~ngI---~i~~f~ 142 (148)
T smart00577 129 PFHPENLI---PIKPWF 142 (148)
T ss_pred hcCccCEE---EecCcC
Confidence 99988876 355544
No 87
>PLN02954 phosphoserine phosphatase
Probab=98.31 E-value=4.4e-06 Score=74.85 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc---EEE----c---------------cCCCChHH-HHHHHHHhCCCC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK---VIR----H---------------RVKKPAGT-AEEIEKHFGCQS 230 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~---~I~----~---------------~akKP~~~-f~~ALk~lgv~p 230 (319)
.++.|+++|++++|+|++....++.+++.+|++ ++. . ...+|.+. +.++++++|.
T Consensus 92 ~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~~~~-- 169 (224)
T PLN02954 92 LVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKKHGY-- 169 (224)
T ss_pred HHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHHcCC--
Confidence 579999999999999999999999999999985 221 0 01344554 6777788875
Q ss_pred CceEEEcCCchhhHHhHHHcCCeEEEEcc
Q 020934 231 SQLIMVGDRPFTDIVYGNRNGFLTILTEP 259 (319)
Q Consensus 231 ~e~vmVGDrl~TDIlgAn~aGm~TILV~P 259 (319)
++++||||.. +|+.+|+++|+..+.+.+
T Consensus 170 ~~~i~iGDs~-~Di~aa~~~~~~~~~~~~ 197 (224)
T PLN02954 170 KTMVMIGDGA-TDLEARKPGGADLFIGYG 197 (224)
T ss_pred CceEEEeCCH-HHHHhhhcCCCCEEEecC
Confidence 7999999998 799999999998776543
No 88
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.28 E-value=2.5e-06 Score=77.10 Aligned_cols=77 Identities=10% Similarity=0.007 Sum_probs=62.8
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc---EEE---------ccCCCChHH-----------HHHHHHHhCCCC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK---VIR---------HRVKKPAGT-----------AEEIEKHFGCQS 230 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~---~I~---------~~akKP~~~-----------f~~ALk~lgv~p 230 (319)
.++.|+++|++++|+||+....++.+++.+ +. ++. ....||.+. ...++++++.++
T Consensus 82 ~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~l~~~~~~~ 160 (219)
T PRK09552 82 FVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSLIRKLSDTN 160 (219)
T ss_pred HHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHHHHHhccCC
Confidence 578999999999999999988888888887 53 220 124567653 146889999999
Q ss_pred CceEEEcCCchhhHHhHHHcCC
Q 020934 231 SQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 231 ~e~vmVGDrl~TDIlgAn~aGm 252 (319)
++++||||.. +|+.+|++||+
T Consensus 161 ~~~i~iGDs~-~Di~aa~~Ag~ 181 (219)
T PRK09552 161 DFHIVIGDSI-TDLEAAKQADK 181 (219)
T ss_pred CCEEEEeCCH-HHHHHHHHCCc
Confidence 9999999998 79999999999
No 89
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=98.25 E-value=4.6e-06 Score=81.17 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=68.2
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEE------------------ccCCCChHH-HHHHHHHhCCCCCceE
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIR------------------HRVKKPAGT-AEEIEKHFGCQSSQLI 234 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~------------------~~akKP~~~-f~~ALk~lgv~p~e~v 234 (319)
-++.|++.|++++|+|+.....++.+.+.+|+..+. ....||++. +.++++++|+++++++
T Consensus 189 lL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~lgi~~~qtI 268 (322)
T PRK11133 189 LVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEIPLAQTV 268 (322)
T ss_pred HHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHcCCChhhEE
Confidence 369999999999999988877777888888986321 013467776 7889999999999999
Q ss_pred EEcCCchhhHHhHHHcCCeEEE
Q 020934 235 MVGDRPFTDIVYGNRNGFLTIL 256 (319)
Q Consensus 235 mVGDrl~TDIlgAn~aGm~TIL 256 (319)
+|||.. +|+.++..||+...+
T Consensus 269 aVGDg~-NDl~m~~~AGlgiA~ 289 (322)
T PRK11133 269 AIGDGA-NDLPMIKAAGLGIAY 289 (322)
T ss_pred EEECCH-HHHHHHHHCCCeEEe
Confidence 999999 899999999996665
No 90
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.14 E-value=7.5e-06 Score=72.25 Aligned_cols=82 Identities=21% Similarity=0.202 Sum_probs=62.0
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEE------------EccC--CCChHHHHHHHHHhCCCCCceEEEcCC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVI------------RHRV--KKPAGTAEEIEKHFGCQSSQLIMVGDR 239 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I------------~~~a--kKP~~~f~~ALk~lgv~p~e~vmVGDr 239 (319)
.++.|+++ ++++|+||+....++.+++.+|+..+ ..+. .+|.+ ...+++.++..+++++||||.
T Consensus 76 ~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~-k~~~l~~~~~~~~~~v~iGDs 153 (205)
T PRK13582 76 FLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDG-KRQAVKALKSLGYRVIAAGDS 153 (205)
T ss_pred HHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccch-HHHHHHHHHHhCCeEEEEeCC
Confidence 57999999 99999999999999999999997521 0112 23433 335566666677999999999
Q ss_pred chhhHHhHHHcCCeEEEEcc
Q 020934 240 PFTDIVYGNRNGFLTILTEP 259 (319)
Q Consensus 240 l~TDIlgAn~aGm~TILV~P 259 (319)
. +|+.+|.++|+ .+++.+
T Consensus 154 ~-~D~~~~~aa~~-~v~~~~ 171 (205)
T PRK13582 154 Y-NDTTMLGEADA-GILFRP 171 (205)
T ss_pred H-HHHHHHHhCCC-CEEECC
Confidence 8 89999999998 455543
No 91
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=97.97 E-value=3.5e-05 Score=67.85 Aligned_cols=84 Identities=12% Similarity=0.029 Sum_probs=65.1
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEE-----Ec--c---CC---------CChHH-HHHHHHHhCCCCCce
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVI-----RH--R---VK---------KPAGT-AEEIEKHFGCQSSQL 233 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I-----~~--~---ak---------KP~~~-f~~ALk~lgv~p~e~ 233 (319)
.++.|+++|++++|+|+.....++.+.+.+|+..+ .. . .+ ++... +.+++++.+++++++
T Consensus 95 ~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~ 174 (202)
T TIGR01490 95 LIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLAEEQIDLKDS 174 (202)
T ss_pred HHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHHHcCCCHHHc
Confidence 36888999999999999888888889899998622 10 0 11 22222 567778889999999
Q ss_pred EEEcCCchhhHHhHHHcCCeEEEEcc
Q 020934 234 IMVGDRPFTDIVYGNRNGFLTILTEP 259 (319)
Q Consensus 234 vmVGDrl~TDIlgAn~aGm~TILV~P 259 (319)
++|||+. +|+.++..+|. .++|.|
T Consensus 175 ~~~gDs~-~D~~~~~~a~~-~~~v~~ 198 (202)
T TIGR01490 175 YAYGDSI-SDLPLLSLVGH-PYVVNP 198 (202)
T ss_pred EeeeCCc-ccHHHHHhCCC-cEEeCC
Confidence 9999999 79999999997 445665
No 92
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=97.97 E-value=1.5e-05 Score=69.90 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=59.1
Q ss_pred hHHHHHHcCCcEEEEecCCH--------------HHHHHHHHHhCCcEEE------ccCCCChHH-HHHHHHHhCC----
Q 020934 174 DWAELQRRGFKGLYEYDNDA--------------SKARKLEGKIGIKVIR------HRVKKPAGT-AEEIEKHFGC---- 228 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~--------------~~v~~l~~~lGI~~I~------~~akKP~~~-f~~ALk~lgv---- 228 (319)
.|.+|.+.||+++|+||..+ .++..+++.+|+++.. ...+||.++ +..+++.++.
T Consensus 37 ~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~i 116 (159)
T PF08645_consen 37 ALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHKDPCRKPNPGMWEFALKDYNDGVEI 116 (159)
T ss_dssp HHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCSSTTSTTSSHHHHHHCCCTSTT--S
T ss_pred HHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCCchhHHHHHHHhccccccc
Confidence 47999999999999999742 2345677889998531 258999998 7888888764
Q ss_pred CCCceEEEcCC----------chhhHHhHHHcCCeE
Q 020934 229 QSSQLIMVGDR----------PFTDIVYGNRNGFLT 254 (319)
Q Consensus 229 ~p~e~vmVGDr----------l~TDIlgAn~aGm~T 254 (319)
+.++.+||||. -.+|...|.++|+..
T Consensus 117 d~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 117 DLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp -CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred cccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 88999999995 358999999999973
No 93
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=97.97 E-value=1.5e-05 Score=71.83 Aligned_cols=81 Identities=14% Similarity=0.060 Sum_probs=63.0
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCC-cEEE----------ccCCCChHH-H----------HHHHHHhCCCCC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGI-KVIR----------HRVKKPAGT-A----------EEIEKHFGCQSS 231 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI-~~I~----------~~akKP~~~-f----------~~ALk~lgv~p~ 231 (319)
-++.|+++|++++|+|++....++.+++.++. ..+. ....||.+. + ..++++++..++
T Consensus 78 ~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~l~~~~~~~~ 157 (214)
T TIGR03333 78 FVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSLIRKLSEPND 157 (214)
T ss_pred HHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHHHHHHhhcCC
Confidence 57999999999999999988888888887743 2221 124567653 2 367888888899
Q ss_pred ceEEEcCCchhhHHhHHHcCCeEEEE
Q 020934 232 QLIMVGDRPFTDIVYGNRNGFLTILT 257 (319)
Q Consensus 232 e~vmVGDrl~TDIlgAn~aGm~TILV 257 (319)
+++||||.. +|+.+|+.||+ +++
T Consensus 158 ~~i~iGDg~-~D~~~a~~Ad~--~~a 180 (214)
T TIGR03333 158 YHIVIGDSV-TDVEAAKQSDL--CFA 180 (214)
T ss_pred cEEEEeCCH-HHHHHHHhCCe--eEe
Confidence 999999998 89999999998 444
No 94
>PTZ00445 p36-lilke protein; Provisional
Probab=97.89 E-value=5.6e-05 Score=70.15 Aligned_cols=85 Identities=11% Similarity=0.115 Sum_probs=65.5
Q ss_pred HHHHHHcCCcEEEEecCC---------------HHHHHHHHHHhCCc-----EE--------------EccCCCChHH--
Q 020934 175 WAELQRRGFKGLYEYDND---------------ASKARKLEGKIGIK-----VI--------------RHRVKKPAGT-- 218 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~---------------~~~v~~l~~~lGI~-----~I--------------~~~akKP~~~-- 218 (319)
+..|++.||+++|+|=.+ ...++..+++-+.. ++ ..+..||.|.
T Consensus 84 ~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK 163 (219)
T PTZ00445 84 GKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDK 163 (219)
T ss_pred HHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccch
Confidence 489999999999887322 22455555644332 11 1367899985
Q ss_pred -H--HHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEccC
Q 020934 219 -A--EEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTEPL 260 (319)
Q Consensus 219 -f--~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~Pi 260 (319)
+ +++++++|++|+|+++|-|+. .-|.+|.++|+.++++.+-
T Consensus 164 ~yHle~ll~~~gl~peE~LFIDD~~-~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 164 SYHLKQVCSDFNVNPDEILFIDDDM-NNCKNALKEGYIALHVTGN 207 (219)
T ss_pred HHHHHHHHHHcCCCHHHeEeecCCH-HHHHHHHHCCCEEEEcCCh
Confidence 4 889999999999999999998 6999999999999999753
No 95
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.88 E-value=6.5e-05 Score=64.68 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=53.8
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEEcc------------------------CCCChHHHHHHHHH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIRHR------------------------VKKPAGTAEEIEKH 225 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~~~------------------------akKP~~~f~~ALk~ 225 (319)
-++.|++.|++++|+||.....++.+++.+|+. .+... .+.+.+. ++++
T Consensus 80 ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K~~---~~~~ 156 (188)
T TIGR01489 80 FIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCKGK---VIHK 156 (188)
T ss_pred HHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCHHH---HHHH
Confidence 479999999999999999888888888888874 12110 1111222 2333
Q ss_pred hCCC-CCceEEEcCCchhhHHhHHHcCC
Q 020934 226 FGCQ-SSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 226 lgv~-p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
+... +++++||||.. +|+.+|+++++
T Consensus 157 ~~~~~~~~~i~iGD~~-~D~~aa~~~d~ 183 (188)
T TIGR01489 157 LSEPKYQHIIYIGDGV-TDVCPAKLSDV 183 (188)
T ss_pred HHhhcCceEEEECCCc-chhchHhcCCc
Confidence 3223 89999999998 89999999865
No 96
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=97.79 E-value=0.00014 Score=67.75 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=67.9
Q ss_pred HHHHHHcCCcEEEEecCCHHHH-------HHHHHHhCCcEE----EccCCCChHH-HHHHHHHhCCCC-CceEEEcCCch
Q 020934 175 WAELQRRGFKGLYEYDNDASKA-------RKLEGKIGIKVI----RHRVKKPAGT-AEEIEKHFGCQS-SQLIMVGDRPF 241 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v-------~~l~~~lGI~~I----~~~akKP~~~-f~~ALk~lgv~p-~e~vmVGDrl~ 241 (319)
+..|+..|+++.++|+.+...+ +.+...++..+. ....+||+|. |..|++++|..| +.+++..|.+
T Consensus 101 v~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~k~lVfeds~- 179 (222)
T KOG2914|consen 101 VNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPSKCLVFEDSP- 179 (222)
T ss_pred HHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCccceEEECCCH-
Confidence 5899999999999998753322 234455555444 1356799998 899999999999 9999999999
Q ss_pred hhHHhHHHcCCeEEEEcc
Q 020934 242 TDIVYGNRNGFLTILTEP 259 (319)
Q Consensus 242 TDIlgAn~aGm~TILV~P 259 (319)
.-|.+|++|||..|+|.-
T Consensus 180 ~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 180 VGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred HHHHHHHhcCCeEEEecC
Confidence 799999999999999964
No 97
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=97.63 E-value=0.00022 Score=66.61 Aligned_cols=81 Identities=22% Similarity=0.252 Sum_probs=66.5
Q ss_pred HHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-----EEE---------ccCCCChHH-HHHHHHHhCCC-CCceEEEcCC
Q 020934 176 AELQRRGFKGLYEYDNDASKARKLEGKIGIK-----VIR---------HRVKKPAGT-AEEIEKHFGCQ-SSQLIMVGDR 239 (319)
Q Consensus 176 ~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-----~I~---------~~akKP~~~-f~~ALk~lgv~-p~e~vmVGDr 239 (319)
-.|+.++ .++-||.....+.++++.|||. ++. .-..||.+. |++|++..|++ |++++++-|+
T Consensus 110 L~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS 187 (244)
T KOG3109|consen 110 LSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDS 187 (244)
T ss_pred HhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCCCcCceEEEcCc
Confidence 4455554 5667788888899999999995 221 125699997 89999999998 9999999999
Q ss_pred chhhHHhHHHcCCeEEEEcc
Q 020934 240 PFTDIVYGNRNGFLTILTEP 259 (319)
Q Consensus 240 l~TDIlgAn~aGm~TILV~P 259 (319)
. .-|.+|+++|+.|++|.-
T Consensus 188 ~-~NI~~ak~vGl~tvlv~~ 206 (244)
T KOG3109|consen 188 E-RNIQTAKEVGLKTVLVGR 206 (244)
T ss_pred h-hhHHHHHhccceeEEEEe
Confidence 8 799999999999999953
No 98
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.53 E-value=0.00023 Score=73.84 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=61.7
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
.++.|+++|++++++|+.....++.+.+.+|++++ ..-+|..+. ++++++..++++++||||.+ +|+.+++++|+
T Consensus 413 ~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~~~--~~~~p~~K~-~~v~~l~~~~~~v~~VGDg~-nD~~al~~A~v 487 (562)
T TIGR01511 413 VIQALKRRGIEPVMLTGDNRKTAKAVAKELGINVR--AEVLPDDKA-ALIKELQEKGRVVAMVGDGI-NDAPALAQADV 487 (562)
T ss_pred HHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCcEE--ccCChHHHH-HHHHHHHHcCCEEEEEeCCC-ccHHHHhhCCE
Confidence 57999999999999999999999999999999854 344665542 34455555778999999998 89999999997
No 99
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.53 E-value=0.00031 Score=72.60 Aligned_cols=76 Identities=22% Similarity=0.249 Sum_probs=61.5
Q ss_pred hHHHHHHcC-CcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 174 DWAELQRRG-FKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 174 ~l~~Lke~G-ikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
.++.|+++| ++++++|+.....++.+++++|+..+.. .-.|..+. +++++++..+++++||||.. +|+.++++||+
T Consensus 392 ~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~-~~~p~~K~-~~v~~l~~~~~~v~~vGDg~-nD~~al~~A~v 468 (556)
T TIGR01525 392 AIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHA-ELLPEDKL-AIVKELQEEGGVVAMVGDGI-NDAPALAAADV 468 (556)
T ss_pred HHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeec-cCCHHHHH-HHHHHHHHcCCEEEEEECCh-hHHHHHhhCCE
Confidence 589999999 9999999999999999999999975532 33454332 35555555778999999998 89999999994
No 100
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.50 E-value=0.00024 Score=73.16 Aligned_cols=80 Identities=23% Similarity=0.222 Sum_probs=64.5
Q ss_pred hHHHHHHcCC-cEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 174 DWAELQRRGF-KGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 174 ~l~~Lke~Gi-kl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
.++.|+++|+ +++++|+.....++.+++++|+..+. ..-.|..+ .+++++++.+.++++||||.. +|+.+++++|+
T Consensus 370 ~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f-~~~~p~~K-~~~i~~l~~~~~~v~~vGDg~-nD~~al~~A~v 446 (536)
T TIGR01512 370 AIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVH-AELLPEDK-LEIVKELREKYGPVAMVGDGI-NDAPALAAADV 446 (536)
T ss_pred HHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhh-hccCcHHH-HHHHHHHHhcCCEEEEEeCCH-HHHHHHHhCCE
Confidence 5899999999 99999999999999999999997542 23356543 246666676778999999998 89999999996
Q ss_pred eEEEE
Q 020934 253 LTILT 257 (319)
Q Consensus 253 ~TILV 257 (319)
+|-+
T Consensus 447 -gia~ 450 (536)
T TIGR01512 447 -GIAM 450 (536)
T ss_pred -EEEe
Confidence 4433
No 101
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.49 E-value=0.00031 Score=60.12 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=57.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEE-----c-c----C----CCCh------HH-HHHHHHHhCCCCCc
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIR-----H-R----V----KKPA------GT-AEEIEKHFGCQSSQ 232 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~-----~-~----a----kKP~------~~-f~~ALk~lgv~p~e 232 (319)
-++.|+++|++++|+|+.....++.+++.+|+..+. . . . .||. +. +.+.++.+|+++++
T Consensus 81 ~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~~~~~~~~~ 160 (177)
T TIGR01488 81 LISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLEESKITLKK 160 (177)
T ss_pred HHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHHHhCCCHHH
Confidence 468999999999999999888888998988886220 0 0 1 1121 12 45667778899999
Q ss_pred eEEEcCCchhhHHhHHHc
Q 020934 233 LIMVGDRPFTDIVYGNRN 250 (319)
Q Consensus 233 ~vmVGDrl~TDIlgAn~a 250 (319)
+++|||.. +|+.++..|
T Consensus 161 ~~~iGDs~-~D~~~~~~a 177 (177)
T TIGR01488 161 IIAVGDSV-NDLPMLKLA 177 (177)
T ss_pred EEEEeCCH-HHHHHHhcC
Confidence 99999998 899998754
No 102
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.48 E-value=0.00049 Score=66.09 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=63.1
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-----EE-----E----ccCCCChH---------H-HHHHHHHhC--
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK-----VI-----R----HRVKKPAG---------T-AEEIEKHFG-- 227 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-----~I-----~----~~akKP~~---------~-f~~ALk~lg-- 227 (319)
-++.|+++|++++|+|+..+..++.+++.+|+. ++ . ...+||.| . +..+.+.++
T Consensus 129 fl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~~~~~~~~~~ 208 (277)
T TIGR01544 129 FFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVALRNTEYFNQL 208 (277)
T ss_pred HHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHHHHHHHhCcc
Confidence 469999999999999998888999999988882 32 1 12346666 3 335667788
Q ss_pred CCCCceEEEcCCchhhHHhHHHc-CCeEEEE
Q 020934 228 CQSSQLIMVGDRPFTDIVYGNRN-GFLTILT 257 (319)
Q Consensus 228 v~p~e~vmVGDrl~TDIlgAn~a-Gm~TILV 257 (319)
.+++++|||||.. +|+.+|.-+ ...+|+-
T Consensus 209 ~~~~~vI~vGDs~-~Dl~ma~g~~~~~~~l~ 238 (277)
T TIGR01544 209 KDRSNIILLGDSQ-GDLRMADGVANVEHILK 238 (277)
T ss_pred CCcceEEEECcCh-hhhhHhcCCCcccceEE
Confidence 8999999999998 899998755 3344443
No 103
>PRK08238 hypothetical protein; Validated
Probab=97.44 E-value=0.00082 Score=68.91 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=66.7
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCC-cEEEc----cCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGI-KVIRH----RVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGN 248 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI-~~I~~----~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn 248 (319)
-+++++++|++++++|+.....++.+.+++|+ +.+.. ...||.++...+.+.++ .++++||||+. .|+.++.
T Consensus 80 ~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd~Vigsd~~~~~kg~~K~~~l~~~l~--~~~~~yvGDS~-~Dlp~~~ 156 (479)
T PRK08238 80 YLRAERAAGRKLVLATASDERLAQAVAAHLGLFDGVFASDGTTNLKGAAKAAALVEAFG--ERGFDYAGNSA-ADLPVWA 156 (479)
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCEEEeCCCccccCCchHHHHHHHHhC--ccCeeEecCCH-HHHHHHH
Confidence 47999999999999999999999999999997 54431 24566665455556666 36699999998 7999999
Q ss_pred HcCCeEEEEccC
Q 020934 249 RNGFLTILTEPL 260 (319)
Q Consensus 249 ~aGm~TILV~Pi 260 (319)
.+| ..+.|+|-
T Consensus 157 ~A~-~av~Vn~~ 167 (479)
T PRK08238 157 AAR-RAIVVGAS 167 (479)
T ss_pred hCC-CeEEECCC
Confidence 999 88999765
No 104
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.33 E-value=0.0011 Score=60.26 Aligned_cols=79 Identities=14% Similarity=0.017 Sum_probs=59.8
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEE-------c-c-------CCCChHH-HHHHHHHhCCCCCceEEEc
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIR-------H-R-------VKKPAGT-AEEIEKHFGCQSSQLIMVG 237 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~-------~-~-------akKP~~~-f~~ALk~lgv~p~e~vmVG 237 (319)
-++.|++.| +++|+|+.....++.+++.+|++.+. . + ..||.+. ..++++..+. ++++||
T Consensus 76 ll~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~---~~v~vG 151 (203)
T TIGR02137 76 FVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYY---RVIAAG 151 (203)
T ss_pred HHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCC---CEEEEe
Confidence 468888875 99999999988899999999987321 1 1 2344443 4455566653 899999
Q ss_pred CCchhhHHhHHHcCCeEEEE
Q 020934 238 DRPFTDIVYGNRNGFLTILT 257 (319)
Q Consensus 238 Drl~TDIlgAn~aGm~TILV 257 (319)
|.. +|+.++..+|+...+-
T Consensus 152 Ds~-nDl~ml~~Ag~~ia~~ 170 (203)
T TIGR02137 152 DSY-NDTTMLSEAHAGILFH 170 (203)
T ss_pred CCH-HHHHHHHhCCCCEEec
Confidence 998 8999999999977665
No 105
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.20 E-value=0.00073 Score=60.33 Aligned_cols=80 Identities=20% Similarity=0.242 Sum_probs=65.4
Q ss_pred hhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 173 IDWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 173 i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
..++.|.+.|+++.|+|..+..-++.=.+.|||..++-+...-...+++.++++++.++|+++|||.+ .|+-.=.+.|+
T Consensus 42 ~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~~dK~~a~~~L~~~~~l~~e~~ayiGDD~-~Dlpvm~~vGl 120 (170)
T COG1778 42 HGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGISDKLAAFEELLKKLNLDPEEVAYVGDDL-VDLPVMEKVGL 120 (170)
T ss_pred HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeechHhHHHHHHHHHHHhCCCHHHhhhhcCcc-ccHHHHHHcCC
Confidence 35799999999999999888777777678999997753222212238899999999999999999998 79999899998
Q ss_pred e
Q 020934 253 L 253 (319)
Q Consensus 253 ~ 253 (319)
.
T Consensus 121 s 121 (170)
T COG1778 121 S 121 (170)
T ss_pred c
Confidence 4
No 106
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=97.17 E-value=0.00037 Score=61.08 Aligned_cols=98 Identities=10% Similarity=-0.024 Sum_probs=71.7
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc--EE----E---ccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK--VI----R---HRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~--~I----~---~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
=|+.|.+. +.++|.|+.....++.+++.++.. ++ . +...+|. +.+.|..+|.+++++|||||+. .|+
T Consensus 50 FL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~--~~K~L~~l~~~~~~vIiVDD~~-~~~ 125 (162)
T TIGR02251 50 FLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGK--YVKDLSLVGKDLSKVIIIDNSP-YSY 125 (162)
T ss_pred HHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC--EEeEchhcCCChhhEEEEeCCh-hhh
Confidence 47889887 999999999988899999998864 22 1 1122333 5678888999999999999998 699
Q ss_pred HhHHHcCCeEEEEccCcCCCchhHHHHHHHHHH
Q 020934 245 VYGNRNGFLTILTEPLSLAEEPFIVRQVRKLEV 277 (319)
Q Consensus 245 lgAn~aGm~TILV~Pi~~~~e~~~trl~R~lEr 277 (319)
.++..+|+..+-..+- .++.--.+++.++|.
T Consensus 126 ~~~~~NgI~i~~f~~~--~~D~~L~~l~~~L~~ 156 (162)
T TIGR02251 126 SLQPDNAIPIKSWFGD--PNDTELLNLIPFLEG 156 (162)
T ss_pred ccCccCEeecCCCCCC--CCHHHHHHHHHHHHH
Confidence 9999999876544432 334344556666665
No 107
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=97.10 E-value=0.0017 Score=66.31 Aligned_cols=129 Identities=16% Similarity=0.211 Sum_probs=76.2
Q ss_pred eEehhHHHHHHHHHHccccccccceeeeeeeeccCCcccCcccc-CCcchh-hHHHHHHcCCcEEEEecCCHHHHHHHHH
Q 020934 124 VLCTNMWWSQLKAALGQRINVEGIVSSTVVFAKDRHLALPHVTV-PDIRYI-DWAELQRRGFKGLYEYDNDASKARKLEG 201 (319)
Q Consensus 124 liiG~~WW~~l~~~lg~~~n~~gI~~~a~vL~rd~~l~~P~~~v-~~i~~i-~l~~Lke~Gikl~I~SNn~~~~v~~l~~ 201 (319)
-+.-..-|.++..++...+ ..|.-. ..+.. -|..++ ++..-. -|+.||+.|.++.++||..-..+..+++
T Consensus 147 ~~~~~~l~~DV~~Avd~~H-~~G~lk--~~v~~-----dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~ 218 (448)
T PF05761_consen 147 EYDYRSLYQDVRDAVDHVH-RDGSLK--REVKE-----DPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMS 218 (448)
T ss_dssp CEEHHHHHHHHHHHHHHHH-HCSCHH--HHHHT-----TCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh-cchHHH--HHHHH-----CHHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhh
Confidence 3455677888877666543 334211 11122 344444 332222 3699999999999999998877776665
Q ss_pred H-hCC------c------EEEccCCCChH----------------------------------H-HHHHHHHhCCCCCce
Q 020934 202 K-IGI------K------VIRHRVKKPAG----------------------------------T-AEEIEKHFGCQSSQL 233 (319)
Q Consensus 202 ~-lGI------~------~I~~~akKP~~----------------------------------~-f~~ALk~lgv~p~e~ 233 (319)
. +|- + +|.+.++||.- + .....+.+|....++
T Consensus 219 yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~V 298 (448)
T PF05761_consen 219 YLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEV 298 (448)
T ss_dssp HHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTSSEECS---SS--TC-EEEE--HHHHHHHCT--GGGE
T ss_pred hccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCCccccccccccccCCCEeecCCHHHHHHHHccCCCeE
Confidence 4 344 2 33334544421 1 344556677788899
Q ss_pred EEEcCCchhhHHhHHHc-CCeEEEEccC
Q 020934 234 IMVGDRPFTDIVYGNRN-GFLTILTEPL 260 (319)
Q Consensus 234 vmVGDrl~TDIlgAn~a-Gm~TILV~Pi 260 (319)
++|||.++.||+.++.. |..|++|-|=
T Consensus 299 LY~GDhi~~Di~~~k~~~gWrT~~Ii~E 326 (448)
T PF05761_consen 299 LYFGDHIYGDILKSKKRHGWRTAAIIPE 326 (448)
T ss_dssp EEEESSTTTTHHHHHHHH-SEEEEE-TT
T ss_pred EEECCchhhhhhhhccccceEEEEEehh
Confidence 99999999999999988 9999999653
No 108
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.07 E-value=0.0018 Score=70.06 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=65.3
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCe
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFL 253 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~ 253 (319)
.++.|++.|++++++|+.+...++.+.+.+|+..+.. .-.|..+ .++++.++.++++++||||.+ +|+.++.+||+
T Consensus 658 ~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~-~~~p~~K-~~~i~~l~~~~~~v~~vGDg~-nD~~al~~Agv- 733 (834)
T PRK10671 658 ALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIA-GVLPDGK-AEAIKRLQSQGRQVAMVGDGI-NDAPALAQADV- 733 (834)
T ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEe-CCCHHHH-HHHHHHHhhcCCEEEEEeCCH-HHHHHHHhCCe-
Confidence 5799999999999999888888899999999975532 3345544 347777887889999999998 79999999999
Q ss_pred EEEE
Q 020934 254 TILT 257 (319)
Q Consensus 254 TILV 257 (319)
.|-.
T Consensus 734 gia~ 737 (834)
T PRK10671 734 GIAM 737 (834)
T ss_pred eEEe
Confidence 4433
No 109
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=96.52 E-value=0.01 Score=54.48 Aligned_cols=75 Identities=15% Similarity=0.220 Sum_probs=50.0
Q ss_pred HHHHHcCCcEEEEecCC-HH----HHHHHHHHhCCcE-------E---EccCCCChHHHHHHHHHhCCCCCceEEEcCCc
Q 020934 176 AELQRRGFKGLYEYDND-AS----KARKLEGKIGIKV-------I---RHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRP 240 (319)
Q Consensus 176 ~~Lke~Gikl~I~SNn~-~~----~v~~l~~~lGI~~-------I---~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl 240 (319)
+.++..+....+.++.. .. ..+.+.+.+++.+ + ..+..|+. .++.+++++|++++++++|||..
T Consensus 147 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~-~l~~l~~~~gi~~~e~i~~GD~~ 225 (272)
T PRK10530 147 QAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGK-RLTQWVEAQGWSMKNVVAFGDNF 225 (272)
T ss_pred HHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHH-HHHHHHHHcCCCHHHeEEeCCCh
Confidence 44555665555555433 22 2334555566542 1 12344443 27789999999999999999998
Q ss_pred hhhHHhHHHcCC
Q 020934 241 FTDIVYGNRNGF 252 (319)
Q Consensus 241 ~TDIlgAn~aGm 252 (319)
+|+.+++.+|+
T Consensus 226 -NDi~m~~~ag~ 236 (272)
T PRK10530 226 -NDISMLEAAGL 236 (272)
T ss_pred -hhHHHHHhcCc
Confidence 89999999997
No 110
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.50 E-value=0.0095 Score=64.08 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=59.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
.++.|+++|++++++|+.+...++.+.+.+|+.+. ..-.|.-+. ++++.++ .++.++||||.+ +|+.+.+++++
T Consensus 576 ~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~~--~~~~p~~K~-~~v~~l~-~~~~v~mvGDgi-NDapAl~~A~v 649 (741)
T PRK11033 576 AISELKALGIKGVMLTGDNPRAAAAIAGELGIDFR--AGLLPEDKV-KAVTELN-QHAPLAMVGDGI-NDAPAMKAASI 649 (741)
T ss_pred HHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCee--cCCCHHHHH-HHHHHHh-cCCCEEEEECCH-HhHHHHHhCCe
Confidence 58999999999999999888999999999999864 234565332 2445555 347899999998 89999999985
No 111
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.50 E-value=0.0096 Score=54.79 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=52.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHH--HHHHHhCCcE-----EEccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKAR--KLEGKIGIKV-----IRHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIV 245 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~--~l~~~lGI~~-----I~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIl 245 (319)
.++.|+++|++++|+||+..+... ..++.+|+.. |..+. .=... +..+++++++++++++||||.. .|+.
T Consensus 32 ~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~-~~~~~~l~~~~~~~~~~~~~~~~vGd~~-~d~~ 109 (242)
T TIGR01459 32 NLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSG-EIAVQMILESKKRFDIRNGIIYLLGHLE-NDII 109 (242)
T ss_pred HHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccH-HHHHHHHHhhhhhccCCCceEEEeCCcc-cchh
Confidence 579999999999999998765544 5668888863 22111 00012 5566678889999999999986 4765
Q ss_pred hHHHcC
Q 020934 246 YGNRNG 251 (319)
Q Consensus 246 gAn~aG 251 (319)
.-..+|
T Consensus 110 ~~~~~~ 115 (242)
T TIGR01459 110 NLMQCY 115 (242)
T ss_pred hhcCCC
Confidence 443334
No 112
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=96.31 E-value=0.023 Score=50.95 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=53.7
Q ss_pred hHHHHHHcCCcEEEEecC-CHHHHHHHHHHhCCc----------EE-----EccCCCChHH-HHHHHHHhCCCCCceEEE
Q 020934 174 DWAELQRRGFKGLYEYDN-DASKARKLEGKIGIK----------VI-----RHRVKKPAGT-AEEIEKHFGCQSSQLIMV 236 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn-~~~~v~~l~~~lGI~----------~I-----~~~akKP~~~-f~~ALk~lgv~p~e~vmV 236 (319)
-|..|+++|++++++|-+ ...-++.+++.|++. -+ .... .... |.++.+..|++.++++++
T Consensus 53 iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g--sK~~Hf~~i~~~tgI~y~eMlFF 130 (169)
T PF12689_consen 53 ILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG--SKTTHFRRIHRKTGIPYEEMLFF 130 (169)
T ss_dssp HHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS---HHHHHHHHHHHH---GGGEEEE
T ss_pred HHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC--chHHHHHHHHHhcCCChhHEEEe
Confidence 479999999999999954 456677888998887 11 1111 1223 888999999999999999
Q ss_pred cCCchhhHHhHHHcCCeEEEEcc
Q 020934 237 GDRPFTDIVYGNRNGFLTILTEP 259 (319)
Q Consensus 237 GDrl~TDIlgAn~aGm~TILV~P 259 (319)
-|+.. -+.-..++|+.+++|..
T Consensus 131 DDe~~-N~~~v~~lGV~~v~v~~ 152 (169)
T PF12689_consen 131 DDESR-NIEVVSKLGVTCVLVPD 152 (169)
T ss_dssp ES-HH-HHHHHHTTT-EEEE-SS
T ss_pred cCchh-cceeeEecCcEEEEeCC
Confidence 99985 55556669999999953
No 113
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.94 E-value=0.025 Score=54.11 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=46.4
Q ss_pred hHHHHHHcCCcEEEEecCCHH---HHHHHHHHhCCcE-----EE-ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhh
Q 020934 174 DWAELQRRGFKGLYEYDNDAS---KARKLEGKIGIKV-----IR-HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTD 243 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~---~v~~l~~~lGI~~-----I~-~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TD 243 (319)
-++.|+++|++++++||.... .+...++.+|++. +. ....+|.+. +..+.+.+++ ++||||++ .|
T Consensus 126 ~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~I----vl~vGD~~-~D 200 (266)
T TIGR01533 126 FLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEI----VLLFGDNL-LD 200 (266)
T ss_pred HHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCE----EEEECCCH-HH
Confidence 468999999999999998743 2346667889852 22 122233333 4445455555 99999998 69
Q ss_pred HHhH
Q 020934 244 IVYG 247 (319)
Q Consensus 244 IlgA 247 (319)
+.++
T Consensus 201 f~~~ 204 (266)
T TIGR01533 201 FDDF 204 (266)
T ss_pred hhhh
Confidence 9664
No 114
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=95.81 E-value=0.026 Score=61.78 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=60.0
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcE--------------------------EEccCCCChHH--HHHHHHH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKV--------------------------IRHRVKKPAGT--AEEIEKH 225 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~--------------------------I~~~akKP~~~--f~~ALk~ 225 (319)
.++.|+++|+++.++|+.+...+..+.+++|+.. ..++.-.|..+ +-++++.
T Consensus 536 ~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~~iv~~lq~ 615 (884)
T TIGR01522 536 AVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQK 615 (884)
T ss_pred HHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999851 01234466654 4455665
Q ss_pred hCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 226 FGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 226 lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
.| +.++||||.. +|+.+.++|++
T Consensus 616 ~g---~~v~mvGDGv-ND~pAl~~AdV 638 (884)
T TIGR01522 616 RG---DVVAMTGDGV-NDAPALKLADI 638 (884)
T ss_pred CC---CEEEEECCCc-ccHHHHHhCCe
Confidence 54 7899999999 89999999996
No 115
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=95.72 E-value=0.036 Score=49.69 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCcEE---------EccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCe
Q 020934 193 ASKARKLEGKIGIKVI---------RHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFL 253 (319)
Q Consensus 193 ~~~v~~l~~~lGI~~I---------~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~ 253 (319)
...+...++..|+.+. ..+..|+.. +..+++.+|++++++++|||.. +|+.+-..+|..
T Consensus 150 ~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~Kg~a-l~~l~~~lgi~~~~vi~~GD~~-NDi~ml~~ag~~ 217 (221)
T TIGR02463 150 MPRFTALLADLGLAIVQGNRFSHVLGASSSKGKA-ANWLKATYNQPDVKTLGLGDGP-NDLPLLEVADYA 217 (221)
T ss_pred HHHHHHHHHHcCCeEEecCCeeEEecCCCCHHHH-HHHHHHHhCCCCCcEEEECCCH-HHHHHHHhCCce
Confidence 3444455555566421 123445443 6788999999999999999998 899999999974
No 116
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=95.71 E-value=0.025 Score=48.75 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=51.9
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcE--EE-ccC----------------C--CChHHHHHH---HHHhCCC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKV--IR-HRV----------------K--KPAGTAEEI---EKHFGCQ 229 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~--I~-~~a----------------k--KP~~~f~~A---Lk~lgv~ 229 (319)
-++.|++.|++++|+|......++.+++.+|++. +. ... . |... +.++ ... +..
T Consensus 97 ~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~-l~~~~~~~~~-~~~ 174 (192)
T PF12710_consen 97 LIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEA-LKELYIRDEE-DID 174 (192)
T ss_dssp HHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHH-HHHHHHHHHH-THT
T ss_pred HHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHH-HHHHHHHhhc-CCC
Confidence 4678899999999999888888999999999974 21 111 0 2111 2233 222 778
Q ss_pred CCceEEEcCCchhhHHhHH
Q 020934 230 SSQLIMVGDRPFTDIVYGN 248 (319)
Q Consensus 230 p~e~vmVGDrl~TDIlgAn 248 (319)
...+++|||.. +|+.+++
T Consensus 175 ~~~~~~iGDs~-~D~~~lr 192 (192)
T PF12710_consen 175 PDRVIAIGDSI-NDLPMLR 192 (192)
T ss_dssp CCEEEEEESSG-GGHHHHH
T ss_pred CCeEEEEECCH-HHHHHhC
Confidence 89999999998 8998764
No 117
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.63 E-value=0.075 Score=48.85 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=66.7
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEE-------E----c------cCCCChHH--HHHHHHHhCCCCCceE
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVI-------R----H------RVKKPAGT--AEEIEKHFGCQSSQLI 234 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I-------~----~------~akKP~~~--f~~ALk~lgv~p~e~v 234 (319)
-++.|+++|++++|+|......++.+.+.+|++.+ . . -....... +.+.++++|+++++++
T Consensus 85 lv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g~~~~~~~ 164 (212)
T COG0560 85 LVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIPLEETV 164 (212)
T ss_pred HHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHHcCCCHHHeE
Confidence 46999999999999998777788999999999732 0 0 11122222 6678889999999999
Q ss_pred EEcCCchhhHHhHHHcCCeEEEEccC
Q 020934 235 MVGDRPFTDIVYGNRNGFLTILTEPL 260 (319)
Q Consensus 235 mVGDrl~TDIlgAn~aGm~TILV~Pi 260 (319)
+|||.. +|+-+=..+|. .|.++|-
T Consensus 165 a~gDs~-nDlpml~~ag~-~ia~n~~ 188 (212)
T COG0560 165 AYGDSA-NDLPMLEAAGL-PIAVNPK 188 (212)
T ss_pred EEcCch-hhHHHHHhCCC-CeEeCcC
Confidence 999998 89999999998 4556664
No 118
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.42 E-value=0.072 Score=49.80 Aligned_cols=82 Identities=15% Similarity=0.247 Sum_probs=53.5
Q ss_pred HHHHHHcCCcEEEEecCC---HHHHHHHHHHhCCcEE------E-ccCCCChHH-HHHHHHHhCCCC-CceEEEcCCchh
Q 020934 175 WAELQRRGFKGLYEYDND---ASKARKLEGKIGIKVI------R-HRVKKPAGT-AEEIEKHFGCQS-SQLIMVGDRPFT 242 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~---~~~v~~l~~~lGI~~I------~-~~akKP~~~-f~~ALk~lgv~p-~e~vmVGDrl~T 242 (319)
++.+++.++...+++... ...+...++..++.++ . .... .... +..+++.+|+++ +++++|||.. +
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs~-N 218 (273)
T PRK00192 141 ARLAKDREFSEPFLWNGSEAAKERFEEALKRLGLKVTRGGRFLHLLGGG-DKGKAVRWLKELYRRQDGVETIALGDSP-N 218 (273)
T ss_pred HHHHHhcccCCceeecCchHHHHHHHHHHHHcCCEEEECCeEEEEeCCC-CHHHHHHHHHHHHhccCCceEEEEcCCh-h
Confidence 344556666655542222 2334444455666522 1 1222 3333 778899999999 9999999998 8
Q ss_pred hHHhHHHcCCeEEEEc
Q 020934 243 DIVYGNRNGFLTILTE 258 (319)
Q Consensus 243 DIlgAn~aGm~TILV~ 258 (319)
|+.++..+|+..+.-+
T Consensus 219 Di~m~~~ag~~vam~N 234 (273)
T PRK00192 219 DLPMLEAADIAVVVPG 234 (273)
T ss_pred hHHHHHhCCeeEEeCC
Confidence 9999999998666554
No 119
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=95.19 E-value=0.091 Score=46.81 Aligned_cols=64 Identities=17% Similarity=0.348 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHhCCcEE--------E-ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEE
Q 020934 191 NDASKARKLEGKIGIKVI--------R-HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTI 255 (319)
Q Consensus 191 n~~~~v~~l~~~lGI~~I--------~-~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TI 255 (319)
.....+..+.+.++..+. . .......+. +..+++++|++++++++|||.. +||.+.+.+|+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~-NDi~m~~~ag~~va 189 (225)
T TIGR01482 116 IDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSE-NDIDLFEVPGFGVA 189 (225)
T ss_pred CCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCH-hhHHHHHhcCceEE
Confidence 344555566666654321 0 112223333 7889999999999999999997 89999999998543
No 120
>PLN02645 phosphoglycolate phosphatase
Probab=95.16 E-value=0.15 Score=49.04 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=52.6
Q ss_pred hhhHHHHHHcCCcEEEEecCCHH---HHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHH
Q 020934 172 YIDWAELQRRGFKGLYEYDNDAS---KARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGN 248 (319)
Q Consensus 172 ~i~l~~Lke~Gikl~I~SNn~~~---~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn 248 (319)
...++.|+++|++++++||+... .+.+-++.+|+.+-....--+.......++..+....+.|+|++.- .|+..+.
T Consensus 50 ~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~l~~~~~~~~~~V~viG~~-~~~~~l~ 128 (311)
T PLN02645 50 PETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAYLKSINFPKDKKVYVIGEE-GILEELE 128 (311)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHHHHhhccCCCCEEEEEcCH-HHHHHHH
Confidence 34689999999999999998733 3222236788863210011111123455666565444567777775 5899999
Q ss_pred HcCCeEE
Q 020934 249 RNGFLTI 255 (319)
Q Consensus 249 ~aGm~TI 255 (319)
.+|+..+
T Consensus 129 ~~Gi~~~ 135 (311)
T PLN02645 129 LAGFQYL 135 (311)
T ss_pred HCCCEEe
Confidence 9999764
No 121
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=94.80 E-value=0.11 Score=46.62 Aligned_cols=67 Identities=19% Similarity=0.355 Sum_probs=46.3
Q ss_pred EecCCHHHHHHHHHHhCCcEEE---------ccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEE
Q 020934 188 EYDNDASKARKLEGKIGIKVIR---------HRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTIL 256 (319)
Q Consensus 188 ~SNn~~~~v~~l~~~lGI~~I~---------~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TIL 256 (319)
.+.+....+...++..|+..+. .+..|.. .++.+++++|++++++++|||.. +|+.+...+|+....
T Consensus 113 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~-~i~~l~~~~~i~~~~~i~iGDs~-ND~~ml~~ag~~vam 188 (215)
T TIGR01487 113 REGKDVDEVREIIKERGLNLVDSGFAIHIMKKGVDKGV-GVEKLKELLGIKPEEVAAIGDSE-NDIDLFRVVGFKVAV 188 (215)
T ss_pred cCCccHHHHHHHHHhCCeEEEecCceEEEecCCCChHH-HHHHHHHHhCCCHHHEEEECCCH-HHHHHHHhCCCeEEc
Confidence 3444445555555666665431 1222221 27788899999999999999998 899999999986544
No 122
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=94.77 E-value=0.13 Score=46.10 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=33.1
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEE
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTIL 256 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TIL 256 (319)
+..+++++|++++++++|||.. +|+.+...+|+....
T Consensus 162 l~~l~~~~~i~~~~~i~~GD~~-NDi~m~~~ag~~vam 198 (230)
T PRK01158 162 LKKLAELMGIDPEEVAAIGDSE-NDLEMFEVAGFGVAV 198 (230)
T ss_pred HHHHHHHhCCCHHHEEEECCch-hhHHHHHhcCceEEe
Confidence 7788999999999999999998 899999999985443
No 123
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=94.13 E-value=0.45 Score=41.84 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=59.0
Q ss_pred hhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcC
Q 020934 173 IDWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNG 251 (319)
Q Consensus 173 i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aG 251 (319)
.++.+|++. +.++|+|.-....+..+++-.|+++-+..+. -++. -.+++..++-+-+.++||||-. +|+++=++|-
T Consensus 37 e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~a~-a~~e~K~~ii~eLkk~~~k~vmVGnGa-ND~laLr~AD 113 (152)
T COG4087 37 ETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVFAG-ADPEMKAKIIRELKKRYEKVVMVGNGA-NDILALREAD 113 (152)
T ss_pred HHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeeecc-cCHHHHHHHHHHhcCCCcEEEEecCCc-chHHHhhhcc
Confidence 478999999 9999998766677888889999986432111 1122 2457777776669999999998 8999999986
Q ss_pred Ce
Q 020934 252 FL 253 (319)
Q Consensus 252 m~ 253 (319)
+-
T Consensus 114 lG 115 (152)
T COG4087 114 LG 115 (152)
T ss_pred cc
Confidence 64
No 124
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=94.02 E-value=0.07 Score=49.27 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHc-------CCeEEEEc
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRN-------GFLTILTE 258 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~a-------Gm~TILV~ 258 (319)
+.+++++++..+++++||||.. ||+.+++.+ |..+|.|.
T Consensus 172 ~~~~~~~~~~~~~~~i~iGD~~-~D~~~~~~~~~~~~~~g~~~v~v~ 217 (244)
T TIGR00685 172 VKRLLWHQPGSGISPVYLGDDI-TDEDAFRVVNNQWGNYGFYPVPIG 217 (244)
T ss_pred HHHHHHhcccCCCceEEEcCCC-cHHHHHHHHhcccCCCCeEEEEEe
Confidence 7789999999999999999998 899999999 88899994
No 125
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=93.92 E-value=0.11 Score=47.88 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=39.1
Q ss_pred CCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 212 VKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 212 akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
...+... ++.+++++|++++++++|||.. +|+.+...+|..+|.|.
T Consensus 164 ~~~~K~~al~~l~~~~~i~~~~~i~~GD~~-ND~~ml~~~~~~~va~~ 210 (249)
T TIGR01485 164 QGSGKGQALQYLLQKLAMEPSQTLVCGDSG-NDIELFEIGSVRGVIVS 210 (249)
T ss_pred CCCChHHHHHHHHHHcCCCccCEEEEECCh-hHHHHHHccCCcEEEEC
Confidence 3445554 7888899999999999999998 79999999888899884
No 126
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=93.64 E-value=0.2 Score=55.20 Aligned_cols=81 Identities=16% Similarity=0.191 Sum_probs=59.0
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcE------------------------------EEccCCCChHHHHHHH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKV------------------------------IRHRVKKPAGTAEEIE 223 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~------------------------------I~~~akKP~~~f~~AL 223 (319)
.++.|+++|++++++|......+..+.+.+|+.. +..+.-.|.-+ .+++
T Consensus 545 ~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P~~K-~~iV 623 (917)
T TIGR01116 545 AIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEPSHK-SELV 623 (917)
T ss_pred HHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCHHHH-HHHH
Confidence 5799999999999999777788888989988731 11223345433 2334
Q ss_pred HHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEE
Q 020934 224 KHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257 (319)
Q Consensus 224 k~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV 257 (319)
+.++-..+.++||||.. +|+-+-+.|++ +|-+
T Consensus 624 ~~lq~~g~~va~iGDG~-ND~~alk~AdV-Gia~ 655 (917)
T TIGR01116 624 ELLQEQGEIVAMTGDGV-NDAPALKKADI-GIAM 655 (917)
T ss_pred HHHHhcCCeEEEecCCc-chHHHHHhCCe-eEEC
Confidence 44444557899999998 89999999998 4444
No 127
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=93.50 E-value=0.22 Score=45.98 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=60.0
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHH-H---HhCCc-----EE-EccCCCChHH-HHHHHHHhCCCCCceEEEcCCchh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLE-G---KIGIK-----VI-RHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFT 242 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~-~---~lGI~-----~I-~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~T 242 (319)
.++.-+++|++++|-|. ....++.+. . ..++. +. ....+|-... +.++++..|++|.|++++-|.+ .
T Consensus 111 ~ik~wk~~g~~vyiYSS-GSV~AQkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~eilFLSDn~-~ 188 (229)
T COG4229 111 AIKRWKALGMRVYIYSS-GSVKAQKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAEILFLSDNP-E 188 (229)
T ss_pred HHHHHHHcCCcEEEEcC-CCchhHHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCchheEEecCCH-H
Confidence 46777889999988763 334444432 1 11121 11 1235566655 8899999999999999999999 5
Q ss_pred hHHhHHHcCCeEEEEc
Q 020934 243 DIVYGNRNGFLTILTE 258 (319)
Q Consensus 243 DIlgAn~aGm~TILV~ 258 (319)
...+|..+||.|+++.
T Consensus 189 EL~AA~~vGl~t~l~~ 204 (229)
T COG4229 189 ELKAAAGVGLATGLAV 204 (229)
T ss_pred HHHHHHhcchheeeee
Confidence 9999999999999983
No 128
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.20 E-value=0.22 Score=51.41 Aligned_cols=83 Identities=19% Similarity=0.174 Sum_probs=66.8
Q ss_pred HHHHHHcCCcEEEEecCCH--HHHHHHHHHhCCc-----EEE---ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhh
Q 020934 175 WAELQRRGFKGLYEYDNDA--SKARKLEGKIGIK-----VIR---HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTD 243 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~--~~v~~l~~~lGI~-----~I~---~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TD 243 (319)
.+.+.+.|.+++++||--. +-.+.++..+|-+ ++. ..-+|-.+. |..+++.-+++|.+.++|||+...|
T Consensus 108 ~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w~H~GDN~~aD 187 (635)
T COG5610 108 VEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKWIHCGDNWVAD 187 (635)
T ss_pred HHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhheEEecCchhhh
Confidence 4889999999999998743 3356788777754 321 245666666 7788888899999999999999999
Q ss_pred HHhHHHcCCeEEEE
Q 020934 244 IVYGNRNGFLTILT 257 (319)
Q Consensus 244 IlgAn~aGm~TILV 257 (319)
++.++.+|+.|.+-
T Consensus 188 ~l~pk~LgI~Tlf~ 201 (635)
T COG5610 188 YLKPKNLGISTLFY 201 (635)
T ss_pred hcCccccchhHHHH
Confidence 99999999988765
No 129
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=93.17 E-value=0.21 Score=53.91 Aligned_cols=71 Identities=24% Similarity=0.319 Sum_probs=53.2
Q ss_pred hhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHh
Q 020934 173 IDWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVY 246 (319)
Q Consensus 173 i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlg 246 (319)
..++.||+.|+++.++|.-+...++.+.+++||+-+. ..-+|.-+.. .++++.-+-+.++||||-+ +|--+
T Consensus 544 ~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~-AellPedK~~-~V~~l~~~g~~VamVGDGI-NDAPA 614 (713)
T COG2217 544 EAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVR-AELLPEDKAE-IVRELQAEGRKVAMVGDGI-NDAPA 614 (713)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhhe-ccCCcHHHHH-HHHHHHhcCCEEEEEeCCc-hhHHH
Confidence 3689999999999999988888899999999997543 4668876532 2233332237899999999 67543
No 130
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=92.96 E-value=0.42 Score=51.39 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=59.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH--HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT--AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNG 251 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~--f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aG 251 (319)
.+++|++.|+++.++|.-+...++.+.+++|+..+. ...+|.-+ +.+.++.- -+.++||||.. +|.-+=..|+
T Consensus 454 aI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~-a~~~PedK~~~v~~lq~~---g~~VamvGDG~-NDapAL~~Ad 528 (675)
T TIGR01497 454 RFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFI-AEATPEDKIALIRQEQAE---GKLVAMTGDGT-NDAPALAQAD 528 (675)
T ss_pred HHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEE-cCCCHHHHHHHHHHHHHc---CCeEEEECCCc-chHHHHHhCC
Confidence 579999999999999988888899999999997553 35578765 33344443 35799999998 8999999898
Q ss_pred Ce
Q 020934 252 FL 253 (319)
Q Consensus 252 m~ 253 (319)
+-
T Consensus 529 vG 530 (675)
T TIGR01497 529 VG 530 (675)
T ss_pred Ee
Confidence 73
No 131
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=92.64 E-value=0.26 Score=45.81 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=52.8
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcE--E----------------------EccCCCChHHHHHHHHHhCCCC
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKV--I----------------------RHRVKKPAGTAEEIEKHFGCQS 230 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~--I----------------------~~~akKP~~~f~~ALk~lgv~p 230 (319)
-..|+++|..++++|.-....+..+...|||++ + +.+.+|+.. ...+++ +..-
T Consensus 97 v~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~--i~~lrk-~~~~ 173 (227)
T KOG1615|consen 97 VSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEV--IALLRK-NYNY 173 (227)
T ss_pred HHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHH--HHHHHh-CCCh
Confidence 389999999999999888888899999999984 2 113344432 222333 7888
Q ss_pred CceEEEcCCchhhHHhHHH
Q 020934 231 SQLIMVGDRPFTDIVYGNR 249 (319)
Q Consensus 231 ~e~vmVGDrl~TDIlgAn~ 249 (319)
+.++||||-- ||+.+---
T Consensus 174 ~~~~mvGDGa-tDlea~~p 191 (227)
T KOG1615|consen 174 KTIVMVGDGA-TDLEAMPP 191 (227)
T ss_pred heeEEecCCc-cccccCCc
Confidence 9999999998 89876443
No 132
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=92.23 E-value=0.17 Score=44.59 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=33.9
Q ss_pred CChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeE
Q 020934 214 KPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLT 254 (319)
Q Consensus 214 KP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~T 254 (319)
.+.+. ++.++++++++++++++|||.. +|+.++..+|+..
T Consensus 162 ~~K~~~~~~~~~~~~~~~~~~~~~GD~~-nD~~~~~~~~~~v 202 (204)
T TIGR01484 162 VDKGSALQALLKELNGKRDEILAFGDSG-NDEEMFEVAGLAV 202 (204)
T ss_pred CChHHHHHHHHHHhCCCHHHEEEEcCCH-HHHHHHHHcCCce
Confidence 33444 7888999999999999999998 8999999999853
No 133
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=92.03 E-value=1.1 Score=42.17 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=55.1
Q ss_pred eccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHH---HHHHHHHHhCCcEEEccCCCChH--H-HHHHHHHhCC
Q 020934 155 AKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDAS---KARKLEGKIGIKVIRHRVKKPAG--T-AEEIEKHFGC 228 (319)
Q Consensus 155 ~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~---~v~~l~~~lGI~~I~~~akKP~~--~-f~~ALk~lgv 228 (319)
+-|.++..-...++.. ...++.|+++|++++++||+... ....-++.+|+..- ..++-. . ....|++.+.
T Consensus 8 D~DGtl~~~~~~~~ga-~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~---~~~i~ts~~~~~~~l~~~~~ 83 (279)
T TIGR01452 8 DCDGVLWLGERVVPGA-PELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGL---AEQLFSSALCAARLLRQPPD 83 (279)
T ss_pred eCCCceEcCCeeCcCH-HHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC---hhhEecHHHHHHHHHHhhCc
Confidence 3344443333333332 33589999999999999997632 22233366888532 222222 1 3455666444
Q ss_pred CCCceEEEcCCchhhHHhHHHcCCeE
Q 020934 229 QSSQLIMVGDRPFTDIVYGNRNGFLT 254 (319)
Q Consensus 229 ~p~e~vmVGDrl~TDIlgAn~aGm~T 254 (319)
....+.+||+.-+++.+ ..+|+..
T Consensus 84 ~~~~v~~iG~~~~~~~l--~~~g~~~ 107 (279)
T TIGR01452 84 APKAVYVIGEEGLRAEL--DAAGIRL 107 (279)
T ss_pred CCCEEEEEcCHHHHHHH--HHCCCEE
Confidence 45789999998766666 3456653
No 134
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=91.52 E-value=0.73 Score=49.57 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=58.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH--HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT--AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNG 251 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~--f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aG 251 (319)
.+++||+.|++..++|.-+...++.+.+++|+.-+. ..-+|.-+ +-+++++-| +-++|+||-. +|--+=++|.
T Consensus 449 ~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~-A~~~PedK~~iV~~lQ~~G---~~VaMtGDGv-NDAPALa~AD 523 (673)
T PRK14010 449 RFRELREMGIETVMCTGDNELTAATIAKEAGVDRFV-AECKPEDKINVIREEQAKG---HIVAMTGDGT-NDAPALAEAN 523 (673)
T ss_pred HHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEE-cCCCHHHHHHHHHHHHhCC---CEEEEECCCh-hhHHHHHhCC
Confidence 579999999999999988888899999999997543 45578765 445555544 5799999998 8987777775
Q ss_pred C
Q 020934 252 F 252 (319)
Q Consensus 252 m 252 (319)
+
T Consensus 524 V 524 (673)
T PRK14010 524 V 524 (673)
T ss_pred E
Confidence 4
No 135
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=91.33 E-value=0.63 Score=51.36 Aligned_cols=70 Identities=26% Similarity=0.306 Sum_probs=54.1
Q ss_pred hhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 172 YIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 172 ~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
......||+.|+++.++|.-+...+..+++++|++-|+ ..-+|.-+. +.++++.-+..-++||||-+ +|=
T Consensus 729 ~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~~V~-aev~P~~K~-~~Ik~lq~~~~~VaMVGDGI-NDa 798 (951)
T KOG0207|consen 729 ALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGIDNVY-AEVLPEQKA-EKIKEIQKNGGPVAMVGDGI-NDA 798 (951)
T ss_pred HHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcceEE-eccCchhhH-HHHHHHHhcCCcEEEEeCCC-Ccc
Confidence 44789999999999999988888899999999998765 456887652 23344444447899999998 663
No 136
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=90.97 E-value=0.29 Score=44.53 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=35.0
Q ss_pred CChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEE
Q 020934 214 KPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257 (319)
Q Consensus 214 KP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV 257 (319)
++.+. +..+++++|++++++++|||.. +|+.+...+|. +|.|
T Consensus 158 ~~K~~al~~l~~~~g~~~~~~i~~GD~~-nD~~ml~~~~~-~iav 200 (236)
T TIGR02471 158 ASKGLALRYLSYRWGLPLEQILVAGDSG-NDEEMLRGLTL-GVVV 200 (236)
T ss_pred CChHHHHHHHHHHhCCCHHHEEEEcCCc-cHHHHHcCCCc-EEEE
Confidence 44444 7788899999999999999998 89999999885 5555
No 137
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=90.47 E-value=1.1 Score=48.35 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=58.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH--HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcC
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT--AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNG 251 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~--f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aG 251 (319)
.+++|++.|++..++|.-+...++.+.+++|++-+. ..-+|.-+ +-+.++.-| +-++|+||-. +|--+=..|.
T Consensus 453 ai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~-A~~~PedK~~iV~~lQ~~G---~~VaMtGDGv-NDAPALa~AD 527 (679)
T PRK01122 453 RFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFL-AEATPEDKLALIRQEQAEG---RLVAMTGDGT-NDAPALAQAD 527 (679)
T ss_pred HHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEE-ccCCHHHHHHHHHHHHHcC---CeEEEECCCc-chHHHHHhCC
Confidence 579999999999999988888899999999997553 45578765 345555544 5699999998 8988777775
Q ss_pred C
Q 020934 252 F 252 (319)
Q Consensus 252 m 252 (319)
+
T Consensus 528 V 528 (679)
T PRK01122 528 V 528 (679)
T ss_pred E
Confidence 4
No 138
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=90.43 E-value=1 Score=49.67 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=58.6
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-------------------------EEEccCCCChHH--HHHHHHHh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK-------------------------VIRHRVKKPAGT--AEEIEKHF 226 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-------------------------~I~~~akKP~~~--f~~ALk~l 226 (319)
.++.|+++|+++.++|.-+...+..+.+++||. -+ ++.-.|.-+ +-+++++.
T Consensus 523 aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~v-fAr~~Pe~K~~iV~~lq~~ 601 (867)
T TIGR01524 523 AIAALFKNGINVKVLTGDNEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHI-FARLTPMQKSRIIGLLKKA 601 (867)
T ss_pred HHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeE-EEECCHHHHHHHHHHHHhC
Confidence 479999999999999987888889999999995 22 234577654 55667766
Q ss_pred CCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 227 GCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 227 gv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
| +.++|+||-. +|.-+=+.|.+
T Consensus 602 G---~vVam~GDGv-NDapALk~AdV 623 (867)
T TIGR01524 602 G---HTVGFLGDGI-NDAPALRKADV 623 (867)
T ss_pred C---CEEEEECCCc-ccHHHHHhCCE
Confidence 5 5799999998 89888887765
No 139
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=90.09 E-value=0.6 Score=42.32 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=44.7
Q ss_pred cccCccccCCcchhhHHHHHHcCCcEEE-EecCC---------HHHHHHHHH---HhCCcEEEccCCCChHHHHHHHHHh
Q 020934 160 LALPHVTVPDIRYIDWAELQRRGFKGLY-EYDND---------ASKARKLEG---KIGIKVIRHRVKKPAGTAEEIEKHF 226 (319)
Q Consensus 160 l~~P~~~v~~i~~i~l~~Lke~Gikl~I-~SNn~---------~~~v~~l~~---~lGI~~I~~~akKP~~~f~~ALk~l 226 (319)
++.|+.++..+++|+++.|+++|+++++ +.||+ .+++++.+. .-|+.++..+..++.+ ...+++.+
T Consensus 5 ~~~Pd~~v~tv~~i~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R-V~~~~~~l 83 (175)
T COG2179 5 FLQPDKLVETVFDITPDILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESR-VARAAEKL 83 (175)
T ss_pred hhChhHHHhhHhhCCHHHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHH-HHhhhhhc
Confidence 4579999999999999999999999863 44442 245554443 3467655445555544 34455555
Q ss_pred CC
Q 020934 227 GC 228 (319)
Q Consensus 227 gv 228 (319)
|+
T Consensus 84 ~v 85 (175)
T COG2179 84 GV 85 (175)
T ss_pred CC
Confidence 54
No 140
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=89.74 E-value=0.34 Score=44.43 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=33.1
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEE
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTIL 256 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TIL 256 (319)
++.+++.+|++++++++|||.. +|+.+...+|+....
T Consensus 193 i~~~~~~~~~~~~~~~~~GD~~-nD~~m~~~~~~~~a~ 229 (256)
T TIGR00099 193 LQSLAEALGISLEDVIAFGDGM-NDIEMLEAAGYGVAM 229 (256)
T ss_pred HHHHHHHcCCCHHHEEEeCCcH-HhHHHHHhCCceeEe
Confidence 7889999999999999999998 899999999985433
No 141
>PRK11590 hypothetical protein; Provisional
Probab=89.19 E-value=3.9 Score=36.78 Aligned_cols=86 Identities=8% Similarity=-0.065 Sum_probs=60.5
Q ss_pred hH-HHHHHcCCcEEEEecCCHHHHHHHHHHhCC----cEEE-------cc--CCCC---hHHHHHHHHHhCCCCCceEEE
Q 020934 174 DW-AELQRRGFKGLYEYDNDASKARKLEGKIGI----KVIR-------HR--VKKP---AGTAEEIEKHFGCQSSQLIMV 236 (319)
Q Consensus 174 ~l-~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI----~~I~-------~~--akKP---~~~f~~ALk~lgv~p~e~vmV 236 (319)
.+ +.|++.|++++|+||+....++.+++.+|+ .+|. .+ .+.+ ..+..++-+.+|.+..++..-
T Consensus 103 ~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~~~~~~~~aY 182 (211)
T PRK11590 103 RLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIGTPLRLYSGY 182 (211)
T ss_pred HHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHhCCCcceEEEe
Confidence 45 568889999999999998888989888883 3331 11 1121 112334444557677788899
Q ss_pred cCCchhhHHhHHHcCCeEEEEccCc
Q 020934 237 GDRPFTDIVYGNRNGFLTILTEPLS 261 (319)
Q Consensus 237 GDrl~TDIlgAn~aGm~TILV~Pi~ 261 (319)
||+. .|+-.-..+|- .++|+|-.
T Consensus 183 ~Ds~-~D~pmL~~a~~-~~~vnp~~ 205 (211)
T PRK11590 183 SDSK-QDNPLLYFCQH-RWRVTPRG 205 (211)
T ss_pred cCCc-ccHHHHHhCCC-CEEECccH
Confidence 9999 79999998886 66787753
No 142
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=88.03 E-value=2.5 Score=39.76 Aligned_cols=82 Identities=17% Similarity=0.082 Sum_probs=49.4
Q ss_pred HHHHHHcCCcEEEEecCCHHH---HHHHHHHhCCcE----E-Ec--cCCCChHHHH----HHHHHhCCCCCceEEEcCCc
Q 020934 175 WAELQRRGFKGLYEYDNDASK---ARKLEGKIGIKV----I-RH--RVKKPAGTAE----EIEKHFGCQSSQLIMVGDRP 240 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~---v~~l~~~lGI~~----I-~~--~akKP~~~f~----~ALk~lgv~p~e~vmVGDrl 240 (319)
++.|+++|++++++|+-.... ....+...|++. + .. ...|+...++ +.+..-|- .=+.+||||+
T Consensus 129 ~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GY--rIv~~iGDq~ 206 (229)
T TIGR01675 129 YQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGY--RIWGNIGDQW 206 (229)
T ss_pred HHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCc--eEEEEECCCh
Confidence 589999999999999877544 334456678762 2 11 1222221122 12222222 3367899998
Q ss_pred hhhHHhHHHcCCeEEEE-ccC
Q 020934 241 FTDIVYGNRNGFLTILT-EPL 260 (319)
Q Consensus 241 ~TDIlgAn~aGm~TILV-~Pi 260 (319)
.|+.|+. +|..|... +|+
T Consensus 207 -sDl~G~~-~~~RtFKLPNPm 225 (229)
T TIGR01675 207 -SDLLGSP-PGRRTFKLPNPM 225 (229)
T ss_pred -HHhcCCC-ccCceeeCCCCc
Confidence 7998874 77677655 454
No 143
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=87.56 E-value=1.8 Score=46.97 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=56.6
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcE------------------------------EEccCCCChHH--HHH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKV------------------------------IRHRVKKPAGT--AEE 221 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~------------------------------I~~~akKP~~~--f~~ 221 (319)
.++.|++.|+++.++|.-+...++.+.+++||.. + +..-.|.-+ +-+
T Consensus 450 aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v-fAr~~Pe~K~~iV~ 528 (755)
T TIGR01647 450 TIERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVEDADG-FAEVFPEHKYEIVE 528 (755)
T ss_pred HHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCE-EEecCHHHHHHHHH
Confidence 4799999999999999888888899999999852 2 234466654 445
Q ss_pred HHHHhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 222 IEKHFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 222 ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
++++.| +-+.|+||-+ +|.-+=+.|.+
T Consensus 529 ~lq~~G---~~VamvGDGv-NDapAL~~AdV 555 (755)
T TIGR01647 529 ILQKRG---HLVGMTGDGV-NDAPALKKADV 555 (755)
T ss_pred HHHhcC---CEEEEEcCCc-ccHHHHHhCCe
Confidence 666655 6799999998 89877776654
No 144
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=87.46 E-value=2.3 Score=47.22 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=57.6
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc---------------------------EEEccCCCChHH--HHHHHH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK---------------------------VIRHRVKKPAGT--AEEIEK 224 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~---------------------------~I~~~akKP~~~--f~~ALk 224 (319)
.++.|+++|+++.++|.-+...+..+.+.+|+. .+ .+.-.|.-+ +-++++
T Consensus 587 aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~V-far~sPe~K~~iV~~lq 665 (941)
T TIGR01517 587 AVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRV-LARSSPLDKQLLVLMLK 665 (941)
T ss_pred HHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeE-EEECCHHHHHHHHHHHH
Confidence 579999999999999988888889999999984 22 245577665 556677
Q ss_pred HhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 225 HFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 225 ~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
+.| +-++||||-. +|.-+=+.|-+
T Consensus 666 ~~g---~vVam~GDGv-NDapALk~AdV 689 (941)
T TIGR01517 666 DMG---EVVAVTGDGT-NDAPALKLADV 689 (941)
T ss_pred HCC---CEEEEECCCC-chHHHHHhCCc
Confidence 655 5799999998 89987776633
No 145
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=87.37 E-value=2.2 Score=39.60 Aligned_cols=72 Identities=10% Similarity=0.048 Sum_probs=51.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhC----Cc---EE--------------------EccCCCChHHHHHHHHHh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIG----IK---VI--------------------RHRVKKPAGTAEEIEKHF 226 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lG----I~---~I--------------------~~~akKP~~~f~~ALk~l 226 (319)
-.++.++++++.+|+|.-....+..+++.++ +. .+ ..+.-||. .++.+
T Consensus 81 f~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~-----vI~~l 155 (220)
T COG4359 81 FVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSS-----VIHEL 155 (220)
T ss_pred HHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcch-----hHHHh
Confidence 4689999999999999877778888777765 32 11 02344443 34444
Q ss_pred CCCCCceEEEcCCchhhHHhHHHcC
Q 020934 227 GCQSSQLIMVGDRPFTDIVYGNRNG 251 (319)
Q Consensus 227 gv~p~e~vmVGDrl~TDIlgAn~aG 251 (319)
.-+++.++|+||.. +|+.+|+..-
T Consensus 156 ~e~~e~~fy~GDsv-sDlsaaklsD 179 (220)
T COG4359 156 SEPNESIFYCGDSV-SDLSAAKLSD 179 (220)
T ss_pred hcCCceEEEecCCc-ccccHhhhhh
Confidence 44678899999998 8999998643
No 146
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=87.33 E-value=2 Score=47.71 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=57.6
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-------------------------EEEccCCCChHH--HHHHHHHh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK-------------------------VIRHRVKKPAGT--AEEIEKHF 226 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-------------------------~I~~~akKP~~~--f~~ALk~l 226 (319)
.++.|+++|+++.++|.-+...+..+.+++||. -+ +..-.|.-+ +-+++++.
T Consensus 558 aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~V-fAr~sPe~K~~IV~~Lq~~ 636 (902)
T PRK10517 558 ALKALKASGVTVKILTGDSELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTL-FARLTPMHKERIVTLLKRE 636 (902)
T ss_pred HHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcE-EEEcCHHHHHHHHHHHHHC
Confidence 469999999999999987788888999999995 12 234567654 55666665
Q ss_pred CCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 227 GCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 227 gv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
| +-+.|+||-+ +|.-+=+.|.+
T Consensus 637 G---~vVam~GDGv-NDaPALk~ADV 658 (902)
T PRK10517 637 G---HVVGFMGDGI-NDAPALRAADI 658 (902)
T ss_pred C---CEEEEECCCc-chHHHHHhCCE
Confidence 5 6799999998 89887777754
No 147
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=87.29 E-value=0.9 Score=45.18 Aligned_cols=65 Identities=25% Similarity=0.432 Sum_probs=42.6
Q ss_pred HHHHHHh-CCcEEEccCCCChHH-HH---HHHH-----HhCC-CCCceEEEcCCchhhHHhHH---------------Hc
Q 020934 197 RKLEGKI-GIKVIRHRVKKPAGT-AE---EIEK-----HFGC-QSSQLIMVGDRPFTDIVYGN---------------RN 250 (319)
Q Consensus 197 ~~l~~~l-GI~~I~~~akKP~~~-f~---~ALk-----~lgv-~p~e~vmVGDrl~TDIlgAn---------------~a 250 (319)
+.+.+++ |-+.-+...+||.+- +. ..+. ..+. .++++-||||+..+||.||| .-
T Consensus 253 esiy~kltGk~L~~~t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~ 332 (389)
T KOG1618|consen 253 ESIYQKLTGKPLRYTTLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANY 332 (389)
T ss_pred HHHHHHhcCCcccccccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCC
Confidence 4454554 433222368899762 32 2222 2233 45789999999999999998 67
Q ss_pred CCeEEEEc-cCc
Q 020934 251 GFLTILTE-PLS 261 (319)
Q Consensus 251 Gm~TILV~-Pi~ 261 (319)
|..+|||. ++.
T Consensus 333 ~w~SILV~TGV~ 344 (389)
T KOG1618|consen 333 GWISILVRTGVY 344 (389)
T ss_pred CceEEEEeeeee
Confidence 88999994 554
No 148
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=87.27 E-value=3.6 Score=33.31 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=42.0
Q ss_pred hHHHHHHcCCcEEEEecCCHH---HHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHHHc
Q 020934 174 DWAELQRRGFKGLYEYDNDAS---KARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRN 250 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~---~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~a 250 (319)
.++.|+++|++++++|||... ...+-++.+|+++-....--|.......+++. -....+.+||-.- .......+
T Consensus 22 ~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~-~~~~~v~vlG~~~--l~~~l~~~ 98 (101)
T PF13344_consen 22 ALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEH-KGGKKVYVLGSDG--LREELREA 98 (101)
T ss_dssp HHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHH-TTSSEEEEES-HH--HHHHHHHT
T ss_pred HHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhc-CCCCEEEEEcCHH--HHHHHHHc
Confidence 689999999999999999632 33333477898731000000111133445542 2357888899774 34444444
Q ss_pred CC
Q 020934 251 GF 252 (319)
Q Consensus 251 Gm 252 (319)
|+
T Consensus 99 G~ 100 (101)
T PF13344_consen 99 GF 100 (101)
T ss_dssp TE
T ss_pred CC
Confidence 43
No 149
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=87.08 E-value=1.9 Score=47.86 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=57.6
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-------------------------EEEccCCCChHH--HHHHHHHh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK-------------------------VIRHRVKKPAGT--AEEIEKHF 226 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-------------------------~I~~~akKP~~~--f~~ALk~l 226 (319)
.++.|+++|+++.++|.-+...+..+.+++||. -+ +..-.|.-+ +-+++++.
T Consensus 558 aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~V-fAr~sPe~K~~iV~~Lq~~ 636 (903)
T PRK15122 558 AIAALRENGVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTV-FAKLTPLQKSRVLKALQAN 636 (903)
T ss_pred HHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCE-EEEeCHHHHHHHHHHHHhC
Confidence 479999999999999987888889999999995 22 234477654 55677766
Q ss_pred CCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 227 GCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 227 gv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
| +-++|+||-. +|.-+=+.|-+
T Consensus 637 G---~vVamtGDGv-NDaPALk~ADV 658 (903)
T PRK15122 637 G---HTVGFLGDGI-NDAPALRDADV 658 (903)
T ss_pred C---CEEEEECCCc-hhHHHHHhCCE
Confidence 5 6799999998 89877776654
No 150
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=84.28 E-value=2.5 Score=43.09 Aligned_cols=97 Identities=19% Similarity=0.320 Sum_probs=65.3
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHH-HhCCc------EEEccCCCChH-----------------------------
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEG-KIGIK------VIRHRVKKPAG----------------------------- 217 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~-~lGI~------~I~~~akKP~~----------------------------- 217 (319)
.+..+++.|-+..+.||.+-.....+.. .+|-+ ++...++||..
T Consensus 206 ~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p~e~~ 285 (424)
T KOG2469|consen 206 LLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGPLEQG 285 (424)
T ss_pred chHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCCcchhc
Confidence 6799999999999999876554443322 33421 12223444432
Q ss_pred -----H-HHHHHHHhCCCCCceEEEcCCchhhHHhH-HHcCCeEEEEccCcCCCchhHHH
Q 020934 218 -----T-AEEIEKHFGCQSSQLIMVGDRPFTDIVYG-NRNGFLTILTEPLSLAEEPFIVR 270 (319)
Q Consensus 218 -----~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgA-n~aGm~TILV~Pi~~~~e~~~tr 270 (319)
+ ...+.+.+++.-.++++|||.++.||+-- ++-|-.|++|.|--..+...++.
T Consensus 286 ~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~peL~~e~~v~~~ 345 (424)
T KOG2469|consen 286 GVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPELEREDLVLLD 345 (424)
T ss_pred ccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEehhhhhhhhhhcc
Confidence 2 34566677787889999999999999765 56799999998765554545444
No 151
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=84.25 E-value=1.5 Score=38.45 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=32.8
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEE
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILT 257 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV 257 (319)
+..+++.+|++++++++|||.. .|+.+-..+|.. +-+
T Consensus 191 i~~l~~~~~i~~~~~~~~GD~~-ND~~Ml~~~~~~-~am 227 (254)
T PF08282_consen 191 IKYLLEYLGISPEDIIAFGDSE-NDIEMLELAGYS-VAM 227 (254)
T ss_dssp HHHHHHHHTTSGGGEEEEESSG-GGHHHHHHSSEE-EEE
T ss_pred HHHHhhhcccccceeEEeeccc-ccHhHHhhcCeE-EEE
Confidence 7788899999999999999998 899999999874 444
No 152
>PRK10976 putative hydrolase; Provisional
Probab=83.78 E-value=1.2 Score=41.05 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCe
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFL 253 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~ 253 (319)
++.+++++|+++++++.|||.. +||.+=..+|.-
T Consensus 195 l~~l~~~lgi~~~~viafGD~~-NDi~Ml~~ag~~ 228 (266)
T PRK10976 195 LEAVAKKLGYSLKDCIAFGDGM-NDAEMLSMAGKG 228 (266)
T ss_pred HHHHHHHcCCCHHHeEEEcCCc-ccHHHHHHcCCC
Confidence 7888999999999999999998 899999999974
No 153
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=83.66 E-value=1.4 Score=40.63 Aligned_cols=37 Identities=14% Similarity=0.349 Sum_probs=32.7
Q ss_pred HHHHHHHhCCC--CCceEEEcCCchhhHHhHHHcCCeEEE
Q 020934 219 AEEIEKHFGCQ--SSQLIMVGDRPFTDIVYGNRNGFLTIL 256 (319)
Q Consensus 219 f~~ALk~lgv~--p~e~vmVGDrl~TDIlgAn~aGm~TIL 256 (319)
++.+++++|++ .+++++|||.. +|+.+-+.+|.....
T Consensus 181 i~~l~~~~~i~~~~~~~~a~GD~~-ND~~Ml~~ag~~vam 219 (256)
T TIGR01486 181 ANALKQFYNQPGGAIKVVGLGDSP-NDLPLLEVVDLAVVV 219 (256)
T ss_pred HHHHHHHHhhcCCCceEEEEcCCH-hhHHHHHHCCEEEEe
Confidence 67888999998 99999999998 899999999975444
No 154
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=83.55 E-value=2.4 Score=41.52 Aligned_cols=87 Identities=20% Similarity=0.219 Sum_probs=58.1
Q ss_pred eeeeccCCcccCcccc--CCcc-hhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc----EEE----ccCCCChHHHH
Q 020934 152 VVFAKDRHLALPHVTV--PDIR-YIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGTAE 220 (319)
Q Consensus 152 ~vL~rd~~l~~P~~~v--~~i~-~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~----~I~----~~akKP~~~f~ 220 (319)
.+.+.|.+|......+ .+.. ...+++|+++|++++|+|++....+...++.+|+. .|. ....||.+...
T Consensus 129 IvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~~kp~~e~~ 208 (301)
T TIGR01684 129 VVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAEEYSTMSTE 208 (301)
T ss_pred EEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCccccCCCCcccc
Confidence 4457788887776543 2222 23589999999999999999999999999999997 232 23455655311
Q ss_pred HHHHHhCCCCCceEEEcCCchhhHH
Q 020934 221 EIEKHFGCQSSQLIMVGDRPFTDIV 245 (319)
Q Consensus 221 ~ALk~lgv~p~e~vmVGDrl~TDIl 245 (319)
+ ...+.+++.=.+.-||.
T Consensus 209 ------d-~~~~~~~~~~~f~~d~~ 226 (301)
T TIGR01684 209 ------D-RQYRYVFTKTPFYLNTT 226 (301)
T ss_pred ------c-cccceEEecCCeEEeCC
Confidence 1 12456677666665654
No 155
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=83.54 E-value=5.1 Score=40.91 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=54.0
Q ss_pred hhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH--HHHHHHHhCCCCCceEEEcCCchhhHHhHHHc
Q 020934 173 IDWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT--AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRN 250 (319)
Q Consensus 173 i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~--f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~a 250 (319)
..++.|++.|++++++|.-....+..+.+.+|+ .....|.-+ +-+.++.-| ..++||||-+ +|..+-..|
T Consensus 354 ~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi----~~~~~p~~K~~~v~~l~~~g---~~v~~vGDg~-nD~~al~~A 425 (499)
T TIGR01494 354 ETISELREAGIRVIMLTGDNVLTAKAIAKELGI----FARVTPEEKAALVEALQKKG---RVVAMTGDGV-NDAPALKKA 425 (499)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc----eeccCHHHHHHHHHHHHHCC---CEEEEECCCh-hhHHHHHhC
Confidence 368999999999999998888888999999997 133456543 233333333 6799999998 799877777
Q ss_pred CC
Q 020934 251 GF 252 (319)
Q Consensus 251 Gm 252 (319)
++
T Consensus 426 dv 427 (499)
T TIGR01494 426 DV 427 (499)
T ss_pred CC
Confidence 54
No 156
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=83.15 E-value=1.3 Score=40.66 Aligned_cols=34 Identities=21% Similarity=0.467 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCe
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFL 253 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~ 253 (319)
+..+++++|+++++++.|||.. +|+.+-..+|.-
T Consensus 201 l~~l~~~~gi~~~~v~afGD~~-NDi~Ml~~ag~~ 234 (270)
T PRK10513 201 VKSLAEHLGIKPEEVMAIGDQE-NDIAMIEYAGVG 234 (270)
T ss_pred HHHHHHHhCCCHHHEEEECCch-hhHHHHHhCCce
Confidence 7888999999999999999998 899999999983
No 157
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=82.45 E-value=2.7 Score=41.22 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=42.0
Q ss_pred eeeeccCCcccCcccc--CCcc-hhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 152 VVFAKDRHLALPHVTV--PDIR-YIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 152 ~vL~rd~~l~~P~~~v--~~i~-~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.+.+-|.+|...+..+ .+.. ...|++|+++|++++|+||+....+..+++.+|+.
T Consensus 131 i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~ 188 (303)
T PHA03398 131 IVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLE 188 (303)
T ss_pred EEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCC
Confidence 3456677887776544 1111 23589999999999999999888899999999986
No 158
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=81.22 E-value=2.7 Score=39.65 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=55.4
Q ss_pred HHHH--HHcCCcEEEEecCCHHHHHHHHHHhCCc-----EE----------------E--ccCCC-C-h-HH---HHHHH
Q 020934 175 WAEL--QRRGFKGLYEYDNDASKARKLEGKIGIK-----VI----------------R--HRVKK-P-A-GT---AEEIE 223 (319)
Q Consensus 175 l~~L--ke~Gikl~I~SNn~~~~v~~l~~~lGI~-----~I----------------~--~~akK-P-~-~~---f~~AL 223 (319)
++.| ++.|+.++|+||.+.-.++.++++.|+. ++ + +.+.+ | . .+ +.+.+
T Consensus 80 l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmCK~~il~~~~ 159 (234)
T PF06888_consen 80 LRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMCKGKILERLL 159 (234)
T ss_pred HHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccchHHHHHHHH
Confidence 5777 4579999999999999999999999884 11 0 12111 2 1 12 33444
Q ss_pred HH---hCCCCCceEEEcCCchhhHHhHHHcCCe
Q 020934 224 KH---FGCQSSQLIMVGDRPFTDIVYGNRNGFL 253 (319)
Q Consensus 224 k~---lgv~p~e~vmVGDrl~TDIlgAn~aGm~ 253 (319)
+. -|+.-++++||||-. +|+-.+.+++-.
T Consensus 160 ~~~~~~g~~~~rviYiGDG~-nD~Cp~~~L~~~ 191 (234)
T PF06888_consen 160 QEQAQRGVPYDRVIYIGDGR-NDFCPALRLRPR 191 (234)
T ss_pred HHHhhcCCCcceEEEECCCC-CCcCcccccCCC
Confidence 43 267779999999998 899999987653
No 159
>COG4996 Predicted phosphatase [General function prediction only]
Probab=80.44 E-value=5.6 Score=35.22 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=46.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEE-ccCCCChHH----HHHHHHHh------CCCCCceEEEcCCc
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIR-HRVKKPAGT----AEEIEKHF------GCQSSQLIMVGDRP 240 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~-~~akKP~~~----f~~ALk~l------gv~p~e~vmVGDrl 240 (319)
.+.+++..|+-+..+|=|....+-+.++.||+.-+. .-.-+|.|- +.+.+..+ .++|+++|++.||-
T Consensus 49 ~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~ 126 (164)
T COG4996 49 TLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRR 126 (164)
T ss_pred HHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEeccc
Confidence 578999999988877667766666666888885211 113467762 34555554 46899999999983
No 160
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=79.98 E-value=6.6 Score=44.43 Aligned_cols=75 Identities=15% Similarity=0.066 Sum_probs=55.8
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc---------------EE---------------------EccCCCChH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK---------------VI---------------------RHRVKKPAG 217 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~---------------~I---------------------~~~akKP~~ 217 (319)
.++.|+++|++++++|.-....+..+.+.+|+. ++ ....-.|.-
T Consensus 654 aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V~ar~sP~~ 733 (1053)
T TIGR01523 654 AVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLVIARCAPQT 733 (1053)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCeEEEecCHHH
Confidence 479999999999999987788888998998882 00 113345654
Q ss_pred H--HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 218 T--AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 218 ~--f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
+ +-+++++.| +.++||||-. +|.-+=+.|.+
T Consensus 734 K~~iV~~lq~~g---~~Vam~GDGv-NDapaLk~AdV 766 (1053)
T TIGR01523 734 KVKMIEALHRRK---AFCAMTGDGV-NDSPSLKMANV 766 (1053)
T ss_pred HHHHHHHHHhcC---CeeEEeCCCc-chHHHHHhCCc
Confidence 4 445666655 6799999998 89888777755
No 161
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=79.76 E-value=17 Score=33.11 Aligned_cols=85 Identities=7% Similarity=-0.104 Sum_probs=57.7
Q ss_pred hH-HHHHHcCCcEEEEecCCHHHHHHHHHHhCC----cEEE----c-cCCC---Ch----HHHHHHHHHhCCCCCceEEE
Q 020934 174 DW-AELQRRGFKGLYEYDNDASKARKLEGKIGI----KVIR----H-RVKK---PA----GTAEEIEKHFGCQSSQLIMV 236 (319)
Q Consensus 174 ~l-~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI----~~I~----~-~akK---P~----~~f~~ALk~lgv~p~e~vmV 236 (319)
.+ +.|+++|++++|+|++....++.+.+.+++ .+|. . ..++ |. .+...+-+.+|.+.+.+.+=
T Consensus 102 ~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~~~~~~~~aY 181 (210)
T TIGR01545 102 RLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKIGSPLKLYSGY 181 (210)
T ss_pred HHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHhCCChhheEEe
Confidence 45 478889999999999998888888877433 3331 0 1112 11 11333444556566777899
Q ss_pred cCCchhhHHhHHHcCCeEEEEccC
Q 020934 237 GDRPFTDIVYGNRNGFLTILTEPL 260 (319)
Q Consensus 237 GDrl~TDIlgAn~aGm~TILV~Pi 260 (319)
||+. .|+-+-..+|- .++|+|-
T Consensus 182 sDS~-~D~pmL~~a~~-~~~Vnp~ 203 (210)
T TIGR01545 182 SDSK-QDNPLLAFCEH-RWRVSKR 203 (210)
T ss_pred cCCc-ccHHHHHhCCC-cEEECcc
Confidence 9999 79999998887 5668774
No 162
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=77.52 E-value=8.6 Score=43.16 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=54.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-----------------------------EE----------------
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK-----------------------------VI---------------- 208 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-----------------------------~I---------------- 208 (319)
.++.|+++|++++++|.-....+..+.+.+|+- ++
T Consensus 576 aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l~~~el~~~ 655 (997)
T TIGR01106 576 AVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDEI 655 (997)
T ss_pred HHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhCCHHHHHHH
Confidence 479999999999999987777777887777761 11
Q ss_pred -------EccCCCChHH--HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 209 -------RHRVKKPAGT--AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 209 -------~~~akKP~~~--f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
.+..-.|.-+ +-+++++.| +-++|+||-. +|+-+=+.|.+
T Consensus 656 ~~~~~~~VfaR~sPeqK~~IV~~lq~~g---~vv~~~GDG~-ND~paLk~AdV 704 (997)
T TIGR01106 656 LKYHTEIVFARTSPQQKLIIVEGCQRQG---AIVAVTGDGV-NDSPALKKADI 704 (997)
T ss_pred HHhcCCEEEEECCHHHHHHHHHHHHHCC---CEEEEECCCc-ccHHHHhhCCc
Confidence 1233356544 456677666 4799999998 89888777654
No 163
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=76.57 E-value=0.41 Score=38.82 Aligned_cols=52 Identities=6% Similarity=-0.219 Sum_probs=42.2
Q ss_pred ccccccccccCCCCCcCCCCCccccccccccccccCCCCCceeEehhHHHHHHHHHHcc
Q 020934 82 NHTFLDQFYSSADTNKLGNQDPESQNQEQDEEPRYNKDKYWTVLCTNMWWSQLKAALGQ 140 (319)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~g~~~liiG~~WW~~l~~~lg~ 140 (319)
++|..+||..+++++.||.+++... +++. ..+.++.++|.....+..+..|.
T Consensus 49 ~~L~~~Gi~~~~~~i~ts~~~~~~~------l~~~-~~~~~v~vlG~~~l~~~l~~~G~ 100 (101)
T PF13344_consen 49 KKLKKLGIPVDEDEIITSGMAAAEY------LKEH-KGGKKVYVLGSDGLREELREAGF 100 (101)
T ss_dssp HHHHHTTTT--GGGEEEHHHHHHHH------HHHH-TTSSEEEEES-HHHHHHHHHTTE
T ss_pred HHHHhcCcCCCcCEEEChHHHHHHH------HHhc-CCCCEEEEEcCHHHHHHHHHcCC
Confidence 4889999999999999999999988 6665 66889999999999988886663
No 164
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=76.57 E-value=5.9 Score=35.33 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=40.3
Q ss_pred eeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 154 FAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 154 L~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.+-|.|+..++....+.....++.|+++|++++++|+.....++.+.+.+|+.
T Consensus 4 ~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 4 SDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 45677877665433222234578999999999999999999999999998875
No 165
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=76.33 E-value=9.8 Score=35.37 Aligned_cols=77 Identities=21% Similarity=0.166 Sum_probs=52.7
Q ss_pred HHHHHcCCcEEEEecCCHHHH----HHHHHHhCCc---EEEccCCCChHH-H--HHHHHHhCCCCCceEEEcCCchhhHH
Q 020934 176 AELQRRGFKGLYEYDNDASKA----RKLEGKIGIK---VIRHRVKKPAGT-A--EEIEKHFGCQSSQLIMVGDRPFTDIV 245 (319)
Q Consensus 176 ~~Lke~Gikl~I~SNn~~~~v----~~l~~~lGI~---~I~~~akKP~~~-f--~~ALk~lgv~p~e~vmVGDrl~TDIl 245 (319)
+.-.++|=++++++......+ +.+++.+.|. .|.....||.+. . ..+++.-++ -++-||+= .||.
T Consensus 124 ~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~~qy~Kt~~i~~~~~----~IhYGDSD-~Di~ 198 (237)
T COG3700 124 DMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKPGQYTKTQWIQDKNI----RIHYGDSD-NDIT 198 (237)
T ss_pred HHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCCCcccccccHHHHhcCc----eEEecCCc-hhhh
Confidence 444578889999987654433 4566667764 233345566553 3 345555554 68899995 7999
Q ss_pred hHHHcCCeEEEE
Q 020934 246 YGNRNGFLTILT 257 (319)
Q Consensus 246 gAn~aGm~TILV 257 (319)
+|+.+|+..|-+
T Consensus 199 AAkeaG~RgIRi 210 (237)
T COG3700 199 AAKEAGARGIRI 210 (237)
T ss_pred HHHhcCccceeE
Confidence 999999999877
No 166
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=74.82 E-value=3.4 Score=37.90 Aligned_cols=41 Identities=10% Similarity=0.072 Sum_probs=30.5
Q ss_pred cCCCChHHHHHHHHHhCC--CCCceEEEcCCchhhHHhHHHcCCe
Q 020934 211 RVKKPAGTAEEIEKHFGC--QSSQLIMVGDRPFTDIVYGNRNGFL 253 (319)
Q Consensus 211 ~akKP~~~f~~ALk~lgv--~p~e~vmVGDrl~TDIlgAn~aGm~ 253 (319)
++.|+.. ....++.+++ ++++++++||+. +|+.+-..+|+.
T Consensus 179 ~~sK~~a-l~~l~~~~~~~~~~~~~i~~GD~~-nD~~ml~~ag~~ 221 (225)
T TIGR02461 179 GSDKGKA-IKRLLDLYKLRPGAIESVGLGDSE-NDFPMFEVVDLA 221 (225)
T ss_pred CCCHHHH-HHHHHHHhccccCcccEEEEcCCH-HHHHHHHhCCCc
Confidence 4455433 4455566654 778999999998 899999999983
No 167
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=74.20 E-value=7.2 Score=34.78 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=42.5
Q ss_pred eeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 153 VFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 153 vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.++-|.+|+.++..+.......++.|+++|++++++|......+..+.+.+++.
T Consensus 5 ~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 5 AIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred EEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 356788888766655444344589999999999999999888888888888885
No 168
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=74.10 E-value=2.9 Score=38.76 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCC
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm 252 (319)
++.+++.+|+++++++.+||.. +||.+=..+|.
T Consensus 193 l~~l~~~~gi~~~~v~afGD~~-NDi~Ml~~ag~ 225 (272)
T PRK15126 193 LAVLSQHLGLSLADCMAFGDAM-NDREMLGSVGR 225 (272)
T ss_pred HHHHHHHhCCCHHHeEEecCCH-HHHHHHHHcCC
Confidence 7788899999999999999998 89999999996
No 169
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=73.86 E-value=6 Score=36.89 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=36.1
Q ss_pred CcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEccCc
Q 020934 205 IKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTEPLS 261 (319)
Q Consensus 205 I~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~Pi~ 261 (319)
+.++...+.|-. .+..+++++++++++++++||+. +|+.+= ..+..+|.|..-.
T Consensus 157 ldilP~~a~K~~-Al~~L~~~~~~~~~~vl~aGDSg-ND~~mL-~~~~~~vvV~Na~ 210 (247)
T PF05116_consen 157 LDILPKGASKGA-ALRYLMERWGIPPEQVLVAGDSG-NDLEML-EGGDHGVVVGNAQ 210 (247)
T ss_dssp EEEEETT-SHHH-HHHHHHHHHT--GGGEEEEESSG-GGHHHH-CCSSEEEE-TTS-
T ss_pred EEEccCCCCHHH-HHHHHHHHhCCCHHHEEEEeCCC-CcHHHH-cCcCCEEEEcCCC
Confidence 334433444422 26678889999999999999998 799877 7888999996543
No 170
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=73.65 E-value=8.1 Score=34.44 Aligned_cols=54 Identities=13% Similarity=0.027 Sum_probs=42.3
Q ss_pred eeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 153 VFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 153 vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.++-|.||+.++..++......+..|+++|++++++|......+..+.+.+|+.
T Consensus 7 ~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 7 AIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred EEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 357788888776666544444688999999999999988888888888888875
No 171
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=73.37 E-value=8 Score=35.93 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=42.9
Q ss_pred HHHHHHcCCcEEEEecCCHH---HHHHHHHHhCCc-----EEEc-cC-CC-ChH----HHHHHHHHhCCCCCceEEEcCC
Q 020934 175 WAELQRRGFKGLYEYDNDAS---KARKLEGKIGIK-----VIRH-RV-KK-PAG----TAEEIEKHFGCQSSQLIMVGDR 239 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~---~v~~l~~~lGI~-----~I~~-~a-kK-P~~----~f~~ALk~lgv~p~e~vmVGDr 239 (319)
++.++++|++++++||-... ....-+++.|++ ++.. .. .+ ... .-++.+++-|. +=+++||||
T Consensus 124 ~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy--~Ii~~iGD~ 201 (229)
T PF03767_consen 124 YNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGY--RIIANIGDQ 201 (229)
T ss_dssp HHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTE--EEEEEEESS
T ss_pred HHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCC--cEEEEeCCC
Confidence 48899999999999986433 233445677875 2221 11 11 111 12344444443 337899999
Q ss_pred chhhHHhHHH
Q 020934 240 PFTDIVYGNR 249 (319)
Q Consensus 240 l~TDIlgAn~ 249 (319)
+ .|+.+++.
T Consensus 202 ~-~D~~~~~~ 210 (229)
T PF03767_consen 202 L-SDFSGAKT 210 (229)
T ss_dssp G-GGCHCTHH
T ss_pred H-HHhhcccc
Confidence 8 69999443
No 172
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=71.28 E-value=9.3 Score=38.96 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=55.3
Q ss_pred hHHHHHHcCCcEEEEecCCH------------HHHHHHHHHhCCcEEE------ccCCCChHH-HHHHHHHh--CCCC--
Q 020934 174 DWAELQRRGFKGLYEYDNDA------------SKARKLEGKIGIKVIR------HRVKKPAGT-AEEIEKHF--GCQS-- 230 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~------------~~v~~l~~~lGI~~I~------~~akKP~~~-f~~ALk~l--gv~p-- 230 (319)
.++.|.+.||+++|-+|..+ .+++.+...+|+++.. ...+||.-. .....+.+ ++.-
T Consensus 112 Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~vPi~~~~A~~~~~yRKP~tGMwe~~~~~~nd~~~Ise 191 (422)
T KOG2134|consen 112 KLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGVPIQLLAAIIKGKYRKPSTGMWEFLKRLENDSVEISE 191 (422)
T ss_pred hhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCCceEEeeeccCCcccCcchhHHHHHHHHhhccceeee
Confidence 58999999999999888743 2456777889998642 347899875 33333232 2322
Q ss_pred CceEEEcC--------------CchhhHHhHHHcCCeEE
Q 020934 231 SQLIMVGD--------------RPFTDIVYGNRNGFLTI 255 (319)
Q Consensus 231 ~e~vmVGD--------------rl~TDIlgAn~aGm~TI 255 (319)
....+||| .-.+|+..|-++|+..+
T Consensus 192 k~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 192 KASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred chhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 33447776 33469999999998754
No 173
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=70.28 E-value=9.7 Score=35.52 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=40.9
Q ss_pred eeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 153 VFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 153 vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.++-|.+|..++..+.......++.|+++|++++++|+.....+..+.+.+|+.
T Consensus 8 ~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 8 FTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred EEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 346678887655444332233579999999999999999988888888999875
No 174
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=69.86 E-value=15 Score=30.64 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=26.8
Q ss_pred Ccccc-CCcchhhHHHHHHcCCcEEEEecCCH--------HHHHHHHHHhCCcEEE
Q 020934 163 PHVTV-PDIRYIDWAELQRRGFKGLYEYDNDA--------SKARKLEGKIGIKVIR 209 (319)
Q Consensus 163 P~~~v-~~i~~i~l~~Lke~Gikl~I~SNn~~--------~~v~~l~~~lGI~~I~ 209 (319)
++.++ +.+...+++.|++.||+.+|.--.++ ...+...+.+|+.++.
T Consensus 7 ~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~ 62 (110)
T PF04273_consen 7 DDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVH 62 (110)
T ss_dssp TTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE
T ss_pred CCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 34444 45566789999999999887421121 1245677899999764
No 175
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=69.85 E-value=9.8 Score=37.41 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=42.4
Q ss_pred eeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 153 VFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 153 vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
+.+-|.+|.-.+.+..+...-.++.|+++|+.++++|.+...++..+.+.+|+.
T Consensus 5 ftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 5 LSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred EEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 346677887655555433334589999999999999999999999999999985
No 176
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=69.33 E-value=11 Score=35.15 Aligned_cols=55 Identities=13% Similarity=0.032 Sum_probs=42.9
Q ss_pred eeeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 152 VVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 152 ~vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
..++-|.||.-++..........+.+|+++|++++++|......+..+.+.+|+.
T Consensus 10 I~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 10 IFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred EEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 3457788888776555333334589999999999999999888888898999873
No 177
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=69.20 E-value=8.8 Score=33.58 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=41.6
Q ss_pred eeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 154 FAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 154 L~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.+-|.+|..++..++......++.|+++|++++++|......+..+.+.+++.
T Consensus 3 ~DlDGTLl~~~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 3 SDLDGTLLNSDGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp EECCTTTCSTTSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred EEECCceecCCCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 45677886666665444344589999999999999999999999999988875
No 178
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=68.97 E-value=10 Score=35.06 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=42.5
Q ss_pred eeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 153 VFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 153 vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.++-|.||+.++..+.......+++|+++|++++++|......+..+.+.+|+.
T Consensus 6 ~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 6 AFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred EEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 346788888776655444344689999999999999988888888888888875
No 179
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=68.90 E-value=12 Score=35.81 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=41.0
Q ss_pred eeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 154 FAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 154 L~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
++-|.+| .|+.+......--+.+|++.|+++++.|.++..+...+.+.+|++
T Consensus 12 tDlD~TL-l~~~ye~~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 12 TDLDGTL-LPHSYEWQPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred EcccCcc-cCCCCCCCccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 3556676 666666666565679999999999999999888887888888875
No 180
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=68.71 E-value=12 Score=34.33 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=40.6
Q ss_pred eeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 154 FAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 154 L~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.+-|.||..+...++......++.|+++|++++++|+.....+..+.+.+|+.
T Consensus 4 ~DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 4 IDLDGTLLNDDHTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred EeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 45677887665545433334579999999999999999988888888888875
No 181
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=68.55 E-value=15 Score=34.56 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=32.1
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHc---CCeEEEEc
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRN---GFLTILTE 258 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~a---Gm~TILV~ 258 (319)
+.++++.+|+..++++++||.. ||+-+=..+ |-.+|.|-
T Consensus 179 l~~ll~~~~~~~~~v~~~GD~~-nD~~mf~~~~~~~g~~vavg 220 (266)
T PRK10187 179 IAAFMQEAPFAGRTPVFVGDDL-TDEAGFAVVNRLGGISVKVG 220 (266)
T ss_pred HHHHHHhcCCCCCeEEEEcCCc-cHHHHHHHHHhcCCeEEEEC
Confidence 7889999999999999999997 897775544 56788883
No 182
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=68.36 E-value=1.2e+02 Score=29.47 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=79.4
Q ss_pred HHHHHccccccccceeeeeeeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEE----
Q 020934 134 LKAALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIR---- 209 (319)
Q Consensus 134 l~~~lg~~~n~~gI~~~a~vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~---- 209 (319)
+.++++...+.++..++-..+.-|....+|+... .-..-+.|-+.||.++--++.+...++++ +..|...|.
T Consensus 92 laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~e---tl~Aae~Lv~eGF~VlPY~~~D~v~a~rL-ed~Gc~aVMPlgs 167 (267)
T CHL00162 92 LGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIG---TLKAAEFLVKKGFTVLPYINADPMLAKHL-EDIGCATVMPLGS 167 (267)
T ss_pred HHHHHhccccccCCCeEEEEEeCCCcccCCChHH---HHHHHHHHHHCCCEEeecCCCCHHHHHHH-HHcCCeEEeeccC
Confidence 3455555555555555444444455555555443 01123889999999876666776677777 667887552
Q ss_pred ---ccCCCChHH-HHHHHHHhCCCCCceEEEcCCch--hhHHhHHHcCCeEEEEc-cCcCCCchhHHHHHHHHHHHH
Q 020934 210 ---HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPF--TDIVYGNRNGFLTILTE-PLSLAEEPFIVRQVRKLEVTI 279 (319)
Q Consensus 210 ---~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~--TDIlgAn~aGm~TILV~-Pi~~~~e~~~trl~R~lEr~i 279 (319)
.+.+=-.+. ++.+++.. +=.|+||=-+- .|+..|-.+|.+.++++ .+...++. ..+.+-|-..+
T Consensus 168 PIGSg~Gl~n~~~l~~i~e~~----~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP--~~mA~a~~~AV 238 (267)
T CHL00162 168 PIGSGQGLQNLLNLQIIIENA----KIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNP--EQMAKAMKLAV 238 (267)
T ss_pred cccCCCCCCCHHHHHHHHHcC----CCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCH--HHHHHHHHHHH
Confidence 122222333 33333333 34577765554 49999999999999995 77766554 34444444333
No 183
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=67.59 E-value=14 Score=32.49 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=40.1
Q ss_pred eeeccCCcccCc-cccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEE
Q 020934 153 VFAKDRHLALPH-VTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVI 208 (319)
Q Consensus 153 vL~rd~~l~~P~-~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I 208 (319)
+++.|.++..+. ..+.......++.|+++|++++++|......+..+++.++..++
T Consensus 3 ~~D~DgTL~~~~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~i 59 (204)
T TIGR01484 3 FFDLDGTLLDPNAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLPLPLI 59 (204)
T ss_pred EEeCcCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCCCCEE
Confidence 357788887665 33332222347999999999999999998888888777665443
No 184
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=66.12 E-value=7.5 Score=36.22 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=32.4
Q ss_pred HHHHHHHhCC---CCCceEEEcCCchhhHHhHHHcCCeEEEE
Q 020934 219 AEEIEKHFGC---QSSQLIMVGDRPFTDIVYGNRNGFLTILT 257 (319)
Q Consensus 219 f~~ALk~lgv---~p~e~vmVGDrl~TDIlgAn~aGm~TILV 257 (319)
++.+++.+|+ ++++++.|||.. +||.+=+.+|. +|.+
T Consensus 192 l~~l~~~lgi~~~~~~~viafGDs~-NDi~Ml~~ag~-gvAM 231 (271)
T PRK03669 192 ANWLIATYQQLSGTRPTTLGLGDGP-NDAPLLDVMDY-AVVV 231 (271)
T ss_pred HHHHHHHHHhhcCCCceEEEEcCCH-HHHHHHHhCCE-EEEe
Confidence 7788899999 999999999998 89999999986 4444
No 185
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=65.29 E-value=14 Score=33.87 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=40.9
Q ss_pred eeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCC
Q 020934 153 VFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGI 205 (319)
Q Consensus 153 vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI 205 (319)
.++-|.||+.++..++......+++|+++|++++++|......+..+++.+|+
T Consensus 7 ~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (270)
T PRK10513 7 AIDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHM 59 (270)
T ss_pred EEecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCC
Confidence 34678888766655544434457999999999999998888888888888886
No 186
>PRK10976 putative hydrolase; Provisional
Probab=65.25 E-value=14 Score=33.84 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=41.8
Q ss_pred eeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 153 VFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 153 vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.++-|.||+.++..++......+..|+++|++++++|......+..+.+.+|+.
T Consensus 6 ~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 6 ASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred EEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 346788887766555444344579999999999999988888888888888875
No 187
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=64.75 E-value=14 Score=32.68 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=38.7
Q ss_pred eeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 154 FAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 154 L~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.+-|.+|.-++..+.......++.|+++|+.++++|......+..+.+.+|+.
T Consensus 3 ~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 3 SDIDGTLTDPNRAINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP 55 (225)
T ss_pred EeccCccCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 35577776655544333233578888899999999988888888888888864
No 188
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=64.17 E-value=32 Score=31.95 Aligned_cols=102 Identities=19% Similarity=0.149 Sum_probs=55.8
Q ss_pred cCCcccCccccCCcchhhHHHHHHcCCcEEEEecCC---HHHHHHHHHHhCCcE-----EE--------ccCCCChH---
Q 020934 157 DRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDND---ASKARKLEGKIGIKV-----IR--------HRVKKPAG--- 217 (319)
Q Consensus 157 d~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~---~~~v~~l~~~lGI~~-----I~--------~~akKP~~--- 217 (319)
|.++...+..++. ....++.|+++|++++++|||. ...+...++.+|++. +. ....++..
T Consensus 9 DGtl~~~~~~i~~-a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~~~~~~v~ 87 (249)
T TIGR01457 9 DGTMYKGKERIPE-AETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDLKLEKTVY 87 (249)
T ss_pred CCceEcCCeeCcC-HHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhcCCCCEEE
Confidence 4444333333332 2335799999999999999976 344455556778752 21 01112211
Q ss_pred -----HHHHHHHHhCCC----CCceEEEcCCch---hhHHhH---HHcCCeEEEEcc
Q 020934 218 -----TAEEIEKHFGCQ----SSQLIMVGDRPF---TDIVYG---NRNGFLTILTEP 259 (319)
Q Consensus 218 -----~f~~ALk~lgv~----p~e~vmVGDrl~---TDIlgA---n~aGm~TILV~P 259 (319)
.+.+.++.+|+. .-+.|+||.... .++..| .+.|+.-|..+|
T Consensus 88 ~lg~~~l~~~l~~~g~~~~~~~~~~Vvvg~~~~~~y~~l~~a~~~l~~g~~~i~tN~ 144 (249)
T TIGR01457 88 VIGEEGLKEAIKEAGYVEDKEKPDYVVVGLDRQIDYEKFATATLAIRKGAHFIGTNG 144 (249)
T ss_pred EEcChhHHHHHHHcCCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCeEEEECC
Confidence 155666766743 235677776422 233322 245888666553
No 189
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=63.94 E-value=19 Score=35.03 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=51.5
Q ss_pred HHHHHHcCCcEEEEecCCHHH---HHHHHHHhCCcE----E-Ecc---CCCChHHHH----HHHHHhCCCCCceEEEcCC
Q 020934 175 WAELQRRGFKGLYEYDNDASK---ARKLEGKIGIKV----I-RHR---VKKPAGTAE----EIEKHFGCQSSQLIMVGDR 239 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~---v~~l~~~lGI~~----I-~~~---akKP~~~f~----~ALk~lgv~p~e~vmVGDr 239 (319)
++.|+++|++++++|+-.... ..+-++..|.+. + ... .++....++ +.+.+-|- .=+..||||
T Consensus 154 y~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGY--rIv~~iGDq 231 (275)
T TIGR01680 154 YNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGY--NIVGIIGDQ 231 (275)
T ss_pred HHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCc--eEEEEECCC
Confidence 489999999999999876432 223345668752 2 111 112211222 22222233 346889999
Q ss_pred chhhHHhHHHcCCeEEEE-ccCcCC
Q 020934 240 PFTDIVYGNRNGFLTILT-EPLSLA 263 (319)
Q Consensus 240 l~TDIlgAn~aGm~TILV-~Pi~~~ 263 (319)
+ .|..|+...+..|.-. +|+..-
T Consensus 232 ~-sDl~G~~~g~~RtFKLPNP~~~~ 255 (275)
T TIGR01680 232 W-NDLKGEHRGAIRSFKLPNPCTTF 255 (275)
T ss_pred H-HhccCCCccCcceecCCCccccc
Confidence 9 7999988444677766 676543
No 190
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=63.35 E-value=29 Score=30.31 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=54.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc--E----EEc--cCCCChHHHHHHH-HHhCCCCCceEEEcCCchhhH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK--V----IRH--RVKKPAGTAEEIE-KHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~--~----I~~--~akKP~~~f~~AL-k~lgv~p~e~vmVGDrl~TDI 244 (319)
-|+.|++. |.++|.|++....+..+++.++.. + +.. ....+ ..+-| ..+|.+.+.+|+|.|+. |+
T Consensus 66 fL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~~---~~KdL~~i~~~d~~~vvivDd~~--~~ 139 (156)
T TIGR02250 66 FLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGSP---HTKSLLRLFPADESMVVIIDDRE--DV 139 (156)
T ss_pred HHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCCCC---ccccHHHHcCCCcccEEEEeCCH--HH
Confidence 57888855 999999999999999999998865 2 211 11122 22334 44688889999999997 78
Q ss_pred HhHHHcCCeEEEEccC
Q 020934 245 VYGNRNGFLTILTEPL 260 (319)
Q Consensus 245 lgAn~aGm~TILV~Pi 260 (319)
...+.- ..|.|.|+
T Consensus 140 ~~~~~~--N~i~i~~~ 153 (156)
T TIGR02250 140 WPWHKR--NLIQIEPY 153 (156)
T ss_pred hhcCcc--CEEEeCCc
Confidence 777642 34555554
No 191
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=63.05 E-value=8.6 Score=37.62 Aligned_cols=158 Identities=20% Similarity=0.229 Sum_probs=89.5
Q ss_pred ccccccCCCCCceeEehhHHHHHHHHHHcccccc-----ccceeeeeee--eccCCccc-Ccccc-CCcchhhHHHHHHc
Q 020934 111 DEEPRYNKDKYWTVLCTNMWWSQLKAALGQRINV-----EGIVSSTVVF--AKDRHLAL-PHVTV-PDIRYIDWAELQRR 181 (319)
Q Consensus 111 ~~~~~~~~~g~~~liiG~~WW~~l~~~lg~~~n~-----~gI~~~a~vL--~rd~~l~~-P~~~v-~~i~~i~l~~Lke~ 181 (319)
.+..++...|.+++++|+.-=-.+.-.+|+.-+. +.+..++..- ..+ .+.+ -.... .+....-.+.|+++
T Consensus 105 ~~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~~~~~~-~l~~~tQTTls~ddt~~Iv~~l~~r 183 (294)
T COG0761 105 KEVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLKVQLPD-KLAFVTQTTLSVDDTAEIVAALKER 183 (294)
T ss_pred HHHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcccCCcc-cEEEEeeeecCHHHHHHHHHHHHHh
Confidence 5567777888888888888777777767754332 1111111111 111 1111 11111 01111124677766
Q ss_pred CCc---------EEEEecCCHHHHHHHHHHhCCcEEEccCCCCh-HH-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHc
Q 020934 182 GFK---------GLYEYDNDASKARKLEGKIGIKVIRHRVKKPA-GT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRN 250 (319)
Q Consensus 182 Gik---------l~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~-~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~a 250 (319)
++ ++.+|-|....++.+....++-++. +.++.. .. +.++.++.|. .+..|.|- .||...--.
T Consensus 184 -~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVV-G~~nSSNs~rL~eiA~~~g~---~aylId~~--~ei~~~w~~ 256 (294)
T COG0761 184 -FPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVV-GSKNSSNSNRLAEIAKRHGK---PAYLIDDA--EEIDPEWLK 256 (294)
T ss_pred -CccccCCcccccchhhhhHHHHHHHHhhcCCEEEEE-CCCCCccHHHHHHHHHHhCC---CeEEeCCh--HhCCHHHhc
Confidence 44 2334444455667787777776554 333333 33 7788888886 67888776 488888888
Q ss_pred CCeEEEEccCcCCCchhHHHHHHHHH
Q 020934 251 GFLTILTEPLSLAEEPFIVRQVRKLE 276 (319)
Q Consensus 251 Gm~TILV~Pi~~~~e~~~trl~R~lE 276 (319)
|..+|.|+--....|.....+.++|+
T Consensus 257 ~~~~VGvTAGAStPd~lV~~Vi~~l~ 282 (294)
T COG0761 257 GVKTVGVTAGASTPDWLVQEVIAKLR 282 (294)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHH
Confidence 99999997444455766554444443
No 192
>PLN02887 hydrolase family protein
Probab=62.21 E-value=8.3 Score=40.95 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCe
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFL 253 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~ 253 (319)
+..+++++|+++++++.|||.. +||.+=..+|.-
T Consensus 512 Lk~L~e~lGI~~eeviAFGDs~-NDIeMLe~AG~g 545 (580)
T PLN02887 512 VKMLLNHLGVSPDEIMAIGDGE-NDIEMLQLASLG 545 (580)
T ss_pred HHHHHHHcCCCHHHEEEEecch-hhHHHHHHCCCE
Confidence 7889999999999999999998 899999999973
No 193
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=60.94 E-value=17 Score=33.09 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=40.7
Q ss_pred eeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 154 FAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 154 L~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.+-|.||+.+...+.......+.+|+++|++++++|......+..+.+.+++.
T Consensus 8 ~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 8 LDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred EeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 46688887666555443344589999999999999988888888888888875
No 194
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=60.29 E-value=1.1e+02 Score=30.22 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=60.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH--H---HHHHHHhC--CCCCceEEEcCC----chh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT--A---EEIEKHFG--CQSSQLIMVGDR----PFT 242 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~--f---~~ALk~lg--v~p~e~vmVGDr----l~T 242 (319)
+...|... +.++++-......++.+.+..++++|......=+|. + .-+.+.+| ++--.+++|||- ...
T Consensus 94 Tarvls~y-~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~S 172 (334)
T PRK01713 94 TARVLGRM-YDAIEYRGFKQSIVNELAEYAGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNS 172 (334)
T ss_pred HHHHHHHh-CCEEEEEcCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHH
Confidence 34566555 667777666667788888888999986433334442 2 23445565 566789999995 445
Q ss_pred hHHhHHHcCCeEEEEccCc
Q 020934 243 DIVYGNRNGFLTILTEPLS 261 (319)
Q Consensus 243 DIlgAn~aGm~TILV~Pi~ 261 (319)
.+.++..+|+.-.++.|-.
T Consensus 173 l~~~~~~~g~~v~~~~P~~ 191 (334)
T PRK01713 173 LLLIGAKLGMDVRICAPKA 191 (334)
T ss_pred HHHHHHHcCCEEEEECCch
Confidence 7888999999988887754
No 195
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=59.41 E-value=9.3 Score=35.10 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEE
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTI 255 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TI 255 (319)
+..+++++|+++++++.+||.. +|+.+=..+|....
T Consensus 194 l~~l~~~lgi~~~~v~afGD~~-ND~~Ml~~ag~gva 229 (264)
T COG0561 194 LQRLAKLLGIKLEEVIAFGDST-NDIEMLEVAGLGVA 229 (264)
T ss_pred HHHHHHHhCCCHHHeEEeCCcc-ccHHHHHhcCeeee
Confidence 6788889999999999999998 89999998887443
No 196
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=59.41 E-value=20 Score=32.88 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=42.2
Q ss_pred eeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 154 FAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 154 L~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.+-|.++...+..+..-....+++++++|++++++|......+..+.+.+++.
T Consensus 8 ~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~ 60 (264)
T COG0561 8 FDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLD 60 (264)
T ss_pred EcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 46677877777665444344578899999999999999988999999999986
No 197
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=59.39 E-value=43 Score=32.29 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=23.4
Q ss_pred hHHHHHHcCCcEEEEecCCH---H-HHHHHHHHhCCc
Q 020934 174 DWAELQRRGFKGLYEYDNDA---S-KARKLEGKIGIK 206 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~---~-~v~~l~~~lGI~ 206 (319)
.++.|+++|++++++|||.. . .++++....+++
T Consensus 32 ~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~ 68 (269)
T COG0647 32 ALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVD 68 (269)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCC
Confidence 68999999999999999863 2 233443335553
No 198
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=58.69 E-value=1.2e+02 Score=29.47 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=57.1
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH--H---HHHHHHhC-CCCCceEEEcC--Cch-hhHH
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT--A---EEIEKHFG-CQSSQLIMVGD--RPF-TDIV 245 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~--f---~~ALk~lg-v~p~e~vmVGD--rl~-TDIl 245 (319)
...|... +.++++-......++.+.+..++++|..+...=+|. + .-+.+++| ++.-.+++||| +.. ..+.
T Consensus 92 ~~~l~~~-~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGd~~~v~~Sl~~ 170 (304)
T PRK00779 92 ARVLSRY-VDAIMIRTFEHETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYEHRGSLKGLKVAWVGDGNNVANSLLL 170 (304)
T ss_pred HHHHHHh-CCEEEEcCCChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEeCCCccHHHHHH
Confidence 4555544 556665555556677888888999986544444452 2 23345566 66678999999 332 3578
Q ss_pred hHHHcCCeEEEEccCc
Q 020934 246 YGNRNGFLTILTEPLS 261 (319)
Q Consensus 246 gAn~aGm~TILV~Pi~ 261 (319)
++.++|+...++.|-.
T Consensus 171 ~l~~~g~~v~~~~P~~ 186 (304)
T PRK00779 171 AAALLGFDLRVATPKG 186 (304)
T ss_pred HHHHcCCEEEEECCcc
Confidence 8889999988888754
No 199
>PLN02382 probable sucrose-phosphatase
Probab=57.96 E-value=14 Score=37.31 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=34.4
Q ss_pred HHHHHHHh---CCCCCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 219 AEEIEKHF---GCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 219 f~~ALk~l---gv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
+...++++ |+++++++.+||.. +|+.+=..+|..+|.|.
T Consensus 180 l~~L~~~~~~~gi~~~~~iafGDs~-NDleMl~~ag~~gvam~ 221 (413)
T PLN02382 180 LAYLLKKLKAEGKAPVNTLVCGDSG-NDAELFSVPDVYGVMVS 221 (413)
T ss_pred HHHHHHHhhhcCCChhcEEEEeCCH-HHHHHHhcCCCCEEEEc
Confidence 66777888 99999999999997 89999999998788873
No 200
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=57.61 E-value=41 Score=31.37 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=25.5
Q ss_pred hHHHHHHcCCcEEEEecCCHH---HHHHHHHHhCCc
Q 020934 174 DWAELQRRGFKGLYEYDNDAS---KARKLEGKIGIK 206 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~---~v~~l~~~lGI~ 206 (319)
.++.|+++|++++++||+... .+...++.+|++
T Consensus 29 al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 29 AVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred HHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 579999999999999998643 344555677875
No 201
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=57.39 E-value=83 Score=23.91 Aligned_cols=85 Identities=22% Similarity=0.253 Sum_probs=53.0
Q ss_pred HHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChH---HHHHHHHHhCCCCCceEEEcCCch-hhHHhHHHcC
Q 020934 176 AELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAG---TAEEIEKHFGCQSSQLIMVGDRPF-TDIVYGNRNG 251 (319)
Q Consensus 176 ~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~---~f~~ALk~lgv~p~e~vmVGDrl~-TDIlgAn~aG 251 (319)
..|+..|+..+... .+..++....+....+++.....=|.. .+.+.++..+ ..-.++++++.-. ..+..+.++|
T Consensus 16 ~~l~~~~~~~v~~~-~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~-~~~~ii~~t~~~~~~~~~~~~~~g 93 (112)
T PF00072_consen 16 KLLERAGYEEVTTA-SSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQIN-PSIPIIVVTDEDDSDEVQEALRAG 93 (112)
T ss_dssp HHHHHTTEEEEEEE-SSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHT-TTSEEEEEESSTSHHHHHHHHHTT
T ss_pred HHHHhCCCCEEEEE-CCHHHHHHHhcccCceEEEEEeeecccccccccccccccc-ccccEEEecCCCCHHHHHHHHHCC
Confidence 67778888433333 445555555566555544323333332 2444555555 4567888886653 4778889999
Q ss_pred CeEEEEccCcC
Q 020934 252 FLTILTEPLSL 262 (319)
Q Consensus 252 m~TILV~Pi~~ 262 (319)
+..++.+|+..
T Consensus 94 ~~~~l~kp~~~ 104 (112)
T PF00072_consen 94 ADDYLSKPFSP 104 (112)
T ss_dssp ESEEEESSSSH
T ss_pred CCEEEECCCCH
Confidence 99999999974
No 202
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=57.20 E-value=15 Score=35.15 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHccccccccceeee-eeeeccCCcccCccccCCcchhhHHHHHHcCC-cEEEEecCCHHHHHHHHHHhC
Q 020934 127 TNMWWSQLKAALGQRINVEGIVSST-VVFAKDRHLALPHVTVPDIRYIDWAELQRRGF-KGLYEYDNDASKARKLEGKIG 204 (319)
Q Consensus 127 G~~WW~~l~~~lg~~~n~~gI~~~a-~vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gi-kl~I~SNn~~~~v~~l~~~lG 204 (319)
-+.+|..+..++.+.++.-|+.... ....+.- -+.|... --++.+++.|- .++|+||.+.-.++.+++++|
T Consensus 51 p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~i-P~~Pgmv------~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~ 123 (256)
T KOG3120|consen 51 PKGFWNELMDRVFKELHEQGVRIAEIKQVLRSI-PIVPGMV------RLIKSAAKLGCFELIIVSDANSFFIEEILEAAG 123 (256)
T ss_pred ccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcC-CCCccHH------HHHHHHHhCCCceEEEEecCchhHHHHHHHHcc
Confidence 4457888888888887776654311 1011110 0122222 13588888885 888999999888888888888
Q ss_pred CcE-------------------E--Ec-----cCCCCh-HH---HHHHHH---HhCCCCCceEEEcCCchhhHHhHHHcC
Q 020934 205 IKV-------------------I--RH-----RVKKPA-GT---AEEIEK---HFGCQSSQLIMVGDRPFTDIVYGNRNG 251 (319)
Q Consensus 205 I~~-------------------I--~~-----~akKP~-~~---f~~ALk---~lgv~p~e~vmVGDrl~TDIlgAn~aG 251 (319)
+.- | +| ....|. .+ +.+... +=|+.-++.+||||-- .|+-.-.++-
T Consensus 124 ~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~-nD~CP~l~Lr 202 (256)
T KOG3120|consen 124 IHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGA-NDFCPVLRLR 202 (256)
T ss_pred HHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCC-CCcCcchhcc
Confidence 741 1 11 111111 11 222221 2267778999999997 7887655443
No 203
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=57.20 E-value=1.1e+02 Score=29.92 Aligned_cols=86 Identities=14% Similarity=0.017 Sum_probs=59.9
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH-----HHHHHHHhC---CCCCceEEEcCC---chhh
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT-----AEEIEKHFG---CQSSQLIMVGDR---PFTD 243 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~-----f~~ALk~lg---v~p~e~vmVGDr---l~TD 243 (319)
...|.. ++.++++--.....+..+.+...+++|..+...=+|. +.-+.+++| ++--.+++|||. ....
T Consensus 91 ~~vls~-~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl 169 (311)
T PRK14804 91 ARYLSR-NVSVIMARLKKHEDLLVMKNGSQVPVINGCDNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSL 169 (311)
T ss_pred HHHHHh-cCCEEEEeCCChHHHHHHHHHCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHHHH
Confidence 455554 6777777656666777888888999996444444452 223445666 566799999993 3346
Q ss_pred HHhHHHcCCeEEEEccCc
Q 020934 244 IVYGNRNGFLTILTEPLS 261 (319)
Q Consensus 244 IlgAn~aGm~TILV~Pi~ 261 (319)
+.++..+|+.-.++.|-.
T Consensus 170 ~~~~~~~G~~v~~~~P~~ 187 (311)
T PRK14804 170 IGITAALGIHLTLVTPIA 187 (311)
T ss_pred HHHHHHcCCEEEEECCCC
Confidence 888889999988998865
No 204
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=57.12 E-value=54 Score=30.08 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=24.1
Q ss_pred hhHHHHHHcCCcEEEEecCCHH---HH-HHHHHHhCCc
Q 020934 173 IDWAELQRRGFKGLYEYDNDAS---KA-RKLEGKIGIK 206 (319)
Q Consensus 173 i~l~~Lke~Gikl~I~SNn~~~---~v-~~l~~~lGI~ 206 (319)
..+..|+++|+++.++||+.+. .. +.+.+.+|++
T Consensus 21 e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~ 58 (236)
T TIGR01460 21 EALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD 58 (236)
T ss_pred HHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3578999999999999998732 22 3454447774
No 205
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=56.90 E-value=31 Score=35.19 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=54.3
Q ss_pred HHHHHHcCCcEEEEecCCHHHHH---------HHHHHhCCcEEEccCCCChH---------H------------------
Q 020934 175 WAELQRRGFKGLYEYDNDASKAR---------KLEGKIGIKVIRHRVKKPAG---------T------------------ 218 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~---------~l~~~lGI~~I~~~akKP~~---------~------------------ 218 (319)
++.|+++|-++.++||...+.|. ...+-+++ |...+.||.- .
T Consensus 249 l~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDV--VIvqA~KP~Fftde~rPfR~~dek~~sl~wdkv~klek 326 (510)
T KOG2470|consen 249 LRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDV--VIVQANKPEFFTDERRPFRKYDEKRGSLLWDKVDKLEK 326 (510)
T ss_pred HHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhhe--eEEecCCCcccccccCcchhhcccccchhhhhhhhccc
Confidence 68999999999999998766653 12222333 2223444421 0
Q ss_pred --------HHHHHHHhCCCCCceEEEcCCchhhHHhHH-HcCCeEEEEc
Q 020934 219 --------AEEIEKHFGCQSSQLIMVGDRPFTDIVYGN-RNGFLTILTE 258 (319)
Q Consensus 219 --------f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn-~aGm~TILV~ 258 (319)
+...++..|-.-.++++.||.++.|..+-- .+|..|-.+-
T Consensus 327 gkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII 375 (510)
T KOG2470|consen 327 GKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAII 375 (510)
T ss_pred CceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccch
Confidence 122233334456799999999999998877 8888887764
No 206
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=56.58 E-value=1.5e+02 Score=28.81 Aligned_cols=86 Identities=16% Similarity=0.088 Sum_probs=58.8
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH--H---HHHHHHhC-CCCCceEEEcC--Cc-hhhHH
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT--A---EEIEKHFG-CQSSQLIMVGD--RP-FTDIV 245 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~--f---~~ALk~lg-v~p~e~vmVGD--rl-~TDIl 245 (319)
...|... +.++++-......++.+.+..++++|......=+|. + .-+.+++| ++--.+++||| +. ...+.
T Consensus 87 ~~vls~y-~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~l~g~kva~vGD~~~v~~S~~~ 165 (302)
T PRK14805 87 AANLSCW-ADAIVARVFSHSTIEQLAEHGSVPVINALCDLYHPCQALADFLTLAEQFGDVSKVKLAYVGDGNNVTHSLMY 165 (302)
T ss_pred HHHHHHh-CCEEEEeCCChhHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEcCCCccHHHHHH
Confidence 4555555 666766556666778888888999996544444552 2 23445565 55568999999 32 34688
Q ss_pred hHHHcCCeEEEEccCc
Q 020934 246 YGNRNGFLTILTEPLS 261 (319)
Q Consensus 246 gAn~aGm~TILV~Pi~ 261 (319)
++.+.|+...++.|-.
T Consensus 166 ~~~~~g~~v~~~~P~~ 181 (302)
T PRK14805 166 GAAILGATMTVICPPG 181 (302)
T ss_pred HHHHcCCEEEEECCch
Confidence 8899999988888765
No 207
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=56.26 E-value=28 Score=31.87 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=37.6
Q ss_pred eeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 154 FAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 154 L~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
.+-|.+|...+ .........++.|+++|++++++|......+..+.+.+|+.
T Consensus 4 ~DlDGTLl~~~-~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 4 TDLDGTLLPPG-YEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred EeCCCCCcCCC-CCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 35566765532 23222233578999999999999999888888888999973
No 208
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=55.38 E-value=1.5e+02 Score=29.43 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=58.9
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH-----HHHHHHHhC---CCCCceEEEcCC----chh
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT-----AEEIEKHFG---CQSSQLIMVGDR----PFT 242 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~-----f~~ALk~lg---v~p~e~vmVGDr----l~T 242 (319)
...|... +.++++-......++.+.+..++++|......=+|. +.-+.+++| ++--.+++|||- ...
T Consensus 94 arvls~y-~D~Iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~S 172 (336)
T PRK03515 94 ARVLGRM-YDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNS 172 (336)
T ss_pred HHHHHHh-CcEEEEEeCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHH
Confidence 4555555 566666666667778888888999986444444552 223445564 566689999994 445
Q ss_pred hHHhHHHcCCeEEEEccCc
Q 020934 243 DIVYGNRNGFLTILTEPLS 261 (319)
Q Consensus 243 DIlgAn~aGm~TILV~Pi~ 261 (319)
-+.++...|+.-.++.|-.
T Consensus 173 l~~~~~~~g~~v~~~~P~~ 191 (336)
T PRK03515 173 LLEAAALTGLDLRLVAPKA 191 (336)
T ss_pred HHHHHHHcCCEEEEECCch
Confidence 7888889999988888754
No 209
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=54.26 E-value=31 Score=36.80 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=50.6
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCc
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRP 240 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl 240 (319)
.+++||+.|++-+.+|.-+.-.+..+.++-|++-.. ...||.-++. .+++-..+-+=+.|.||--
T Consensus 455 Rf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfi-AeatPEdK~~-~I~~eQ~~grlVAMtGDGT 519 (681)
T COG2216 455 RFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFI-AEATPEDKLA-LIRQEQAEGRLVAMTGDGT 519 (681)
T ss_pred HHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhh-hcCChHHHHH-HHHHHHhcCcEEEEcCCCC
Confidence 689999999999999988888889999999997432 4668876643 4444444557899999975
No 210
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=52.28 E-value=35 Score=31.36 Aligned_cols=53 Identities=19% Similarity=0.082 Sum_probs=38.5
Q ss_pred eeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc
Q 020934 154 FAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGIK 206 (319)
Q Consensus 154 L~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~ 206 (319)
++-|.++..............++.|+++|++++++|......+..+++.+|+.
T Consensus 4 ~DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 4 TDLDGTLLDPHGYDWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred EcCCCCCcCCCCcCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 45567776554422222233578999999999999988888888888999874
No 211
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=52.02 E-value=57 Score=36.96 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=27.2
Q ss_pred hhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCC
Q 020934 173 IDWAELQRRGFKGLYEYDNDASKARKLEGKIGI 205 (319)
Q Consensus 173 i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI 205 (319)
..++.|+++|+++.++|.-+...+..+++++|+
T Consensus 663 ~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gi 695 (1054)
T TIGR01657 663 EVIKELKRASIRTVMITGDNPLTAVHVARECGI 695 (1054)
T ss_pred HHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 368999999999999987776777777777777
No 212
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=50.94 E-value=2e+02 Score=28.54 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=58.8
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH-----HHHHHHHhC---CCCCceEEEcCC----chh
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT-----AEEIEKHFG---CQSSQLIMVGDR----PFT 242 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~-----f~~ALk~lg---v~p~e~vmVGDr----l~T 242 (319)
...|... +.++++-......++.+.+..++++|......=+|. +.-+.+++| ++--.+++|||- ...
T Consensus 94 arvls~y-~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S 172 (334)
T PRK12562 94 ARVLGRM-YDGIQYRGHGQEVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNS 172 (334)
T ss_pred HHHHHHh-CCEEEEECCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCCCHHHH
Confidence 4555555 556666556666778888888999986443444452 233446664 566789999995 344
Q ss_pred hHHhHHHcCCeEEEEccCc
Q 020934 243 DIVYGNRNGFLTILTEPLS 261 (319)
Q Consensus 243 DIlgAn~aGm~TILV~Pi~ 261 (319)
.+.++..+|+...++.|-.
T Consensus 173 ~~~~~~~~G~~v~~~~P~~ 191 (334)
T PRK12562 173 MLEAAALTGLDLRLVAPQA 191 (334)
T ss_pred HHHHHHHcCCEEEEECCcc
Confidence 6788889999988888754
No 213
>PLN02342 ornithine carbamoyltransferase
Probab=49.71 E-value=2e+02 Score=28.77 Aligned_cols=86 Identities=16% Similarity=0.097 Sum_probs=57.4
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH-----HHHHHHHhC-CCCCceEEEcC---CchhhHH
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT-----AEEIEKHFG-CQSSQLIMVGD---RPFTDIV 245 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~-----f~~ALk~lg-v~p~e~vmVGD---rl~TDIl 245 (319)
...|... ..++++-......++.+.+..++++|......=+|. +.-+.+++| ++--.+++||| -....+.
T Consensus 134 arvLs~y-~D~IviR~~~~~~~~~la~~~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G~l~glkva~vGD~~nva~Sli~ 212 (348)
T PLN02342 134 ARVLSRY-NDIIMARVFAHQDVLDLAEYSSVPVINGLTDYNHPCQIMADALTIIEHIGRLEGTKVVYVGDGNNIVHSWLL 212 (348)
T ss_pred HHHHHHh-CCEEEEeCCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCchhHHHHHH
Confidence 4555555 566666555566677888888999986433333442 223445565 55678999999 3334688
Q ss_pred hHHHcCCeEEEEccCc
Q 020934 246 YGNRNGFLTILTEPLS 261 (319)
Q Consensus 246 gAn~aGm~TILV~Pi~ 261 (319)
++.++|+.-.++.|-.
T Consensus 213 ~~~~~G~~v~~~~P~~ 228 (348)
T PLN02342 213 LAAVLPFHFVCACPKG 228 (348)
T ss_pred HHHHcCCEEEEECCcc
Confidence 8889999988888754
No 214
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=49.19 E-value=72 Score=35.72 Aligned_cols=77 Identities=21% Similarity=0.172 Sum_probs=56.5
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-------EE---------------------EccCCCChHH--HHHHH
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIK-------VI---------------------RHRVKKPAGT--AEEIE 223 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-------~I---------------------~~~akKP~~~--f~~AL 223 (319)
.++.|+++|+++.++|.-....+..+.+.+|+. ++ .+..--|.-+ +-+++
T Consensus 555 aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~qK~~IV~~l 634 (917)
T COG0474 555 AIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQKARIVEAL 634 (917)
T ss_pred HHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHHHHHHHHHH
Confidence 579999999999999876666777777777752 21 0123345544 55777
Q ss_pred HHhCCCCCceEEEcCCchhhHHhHHHcCCeE
Q 020934 224 KHFGCQSSQLIMVGDRPFTDIVYGNRNGFLT 254 (319)
Q Consensus 224 k~lgv~p~e~vmVGDrl~TDIlgAn~aGm~T 254 (319)
++.| +-++|+||-. +|+-+=+.|-+--
T Consensus 635 q~~g---~vVamtGDGv-NDapALk~ADVGI 661 (917)
T COG0474 635 QKSG---HVVAMTGDGV-NDAPALKAADVGI 661 (917)
T ss_pred HhCC---CEEEEeCCCc-hhHHHHHhcCccE
Confidence 7776 6899999998 8999888886643
No 215
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=49.15 E-value=43 Score=32.02 Aligned_cols=121 Identities=15% Similarity=0.185 Sum_probs=61.3
Q ss_pred ehhHHHHHHHHHHc-ccccccccee---eeeeeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHH
Q 020934 126 CTNMWWSQLKAALG-QRINVEGIVS---STVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEG 201 (319)
Q Consensus 126 iG~~WW~~l~~~lg-~~~n~~gI~~---~a~vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~ 201 (319)
.=.+||.....-+. +.+....+.. ...+.+|+ -...-++.|.+.+++++|.|---+.-++.+++
T Consensus 58 ~M~EWw~kah~llv~~~l~k~~i~~~V~~s~i~LRd------------g~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~ 125 (246)
T PF05822_consen 58 HMEEWWTKAHELLVEQGLTKSEIEEAVKESDIMLRD------------GVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLR 125 (246)
T ss_dssp HHHHHHHHHHHHHHHHT-BGGGHHHHHHCS---B-B------------THHHHHHHHHCTT--EEEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcCHHHHHHHHHhcchhhhc------------CHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHH
Confidence 34689998754332 3333333332 12222333 12334799999999999887445666677777
Q ss_pred HhCCc-----EEE-----------ccCCCChHH-H---HHHH------HHhCCCCCceEEEcCCchhhHHhHHHc-CCeE
Q 020934 202 KIGIK-----VIR-----------HRVKKPAGT-A---EEIE------KHFGCQSSQLIMVGDRPFTDIVYGNRN-GFLT 254 (319)
Q Consensus 202 ~lGI~-----~I~-----------~~akKP~~~-f---~~AL------k~lgv~p~e~vmVGDrl~TDIlgAn~a-Gm~T 254 (319)
+.|.- +|+ .+.+-|.-- | ..++ +.+. ...+++..||.+ -|+-+|.-+ ...+
T Consensus 126 q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l~~~~~~~~~~-~R~NvlLlGDsl-gD~~Ma~G~~~~~~ 203 (246)
T PF05822_consen 126 QAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESALEDSPYFKQLK-KRTNVLLLGDSL-GDLHMADGVPDEEN 203 (246)
T ss_dssp HTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHHTTHHHHHCTT-T--EEEEEESSS-GGGGTTTT-S--SE
T ss_pred HcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccccCchHHHHhc-cCCcEEEecCcc-CChHhhcCCCcccc
Confidence 66652 331 122333110 1 1233 1222 457899999999 799998776 5566
Q ss_pred EEEccC
Q 020934 255 ILTEPL 260 (319)
Q Consensus 255 ILV~Pi 260 (319)
++--++
T Consensus 204 ~lkIGF 209 (246)
T PF05822_consen 204 VLKIGF 209 (246)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 665444
No 216
>PRK10444 UMP phosphatase; Provisional
Probab=49.00 E-value=81 Score=29.51 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=24.0
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHH---HHHHhCCc
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARK---LEGKIGIK 206 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~---l~~~lGI~ 206 (319)
.++.|+++|++++++||+.....+. -++.+|++
T Consensus 25 ~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~ 60 (248)
T PRK10444 25 FLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD 60 (248)
T ss_pred HHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 5799999999999999987543332 23556774
No 217
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=47.82 E-value=78 Score=34.64 Aligned_cols=82 Identities=13% Similarity=0.083 Sum_probs=60.2
Q ss_pred EehhHHHHHHHHHHcccccccccee----------------eeeeeeccCCcccCccccCCcchhhHHHHHHcCCcEEEE
Q 020934 125 LCTNMWWSQLKAALGQRINVEGIVS----------------STVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYE 188 (319)
Q Consensus 125 iiG~~WW~~l~~~lg~~~n~~gI~~----------------~a~vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~ 188 (319)
+.-+.|+..+...+-+-|.+.+..- -....+-|.||..++..........++.|+++|+.++++
T Consensus 376 ~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KLIfsDLDGTLLd~d~~i~~~t~eAL~~L~ekGI~~VIA 455 (694)
T PRK14502 376 MDLPKFSAIIEKYLPQMVLPDGELISRAARPSRLPSSGQFKKIVYTDLDGTLLNPLTYSYSTALDALRLLKDKELPLVFC 455 (694)
T ss_pred CCHHHHHHHHHHhchheeCCCCCccchhhhcccCCCcCceeeEEEEECcCCCcCCCCccCHHHHHHHHHHHHcCCeEEEE
Confidence 4667888888777777776666421 124457788987766655333334589999999999999
Q ss_pred ecCCHHHHHHHHHHhCCc
Q 020934 189 YDNDASKARKLEGKIGIK 206 (319)
Q Consensus 189 SNn~~~~v~~l~~~lGI~ 206 (319)
|......+..+.+.+|+.
T Consensus 456 TGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 456 SAKTMGEQDLYRNELGIK 473 (694)
T ss_pred eCCCHHHHHHHHHHcCCC
Confidence 999988888888888874
No 218
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=47.61 E-value=2.5e+02 Score=27.37 Aligned_cols=88 Identities=22% Similarity=0.248 Sum_probs=55.2
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccC---CCChHH---HHHHHHHhC-CCCCceEEEcCC-----ch
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRV---KKPAGT---AEEIEKHFG-CQSSQLIMVGDR-----PF 241 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~a---kKP~~~---f~~ALk~lg-v~p~e~vmVGDr-----l~ 241 (319)
+..-|..-|+.++++-......+..+.+..++++|.... .-|--. +.-+.+.+| ++--.+++|||- ..
T Consensus 93 ta~vls~y~~D~iv~R~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~G~l~g~kv~~vGD~~~~~v~~ 172 (305)
T PRK00856 93 TIRTLSAMGADAIVIRHPQSGAARLLAESSDVPVINAGDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVGDIKHSRVAR 172 (305)
T ss_pred HHHHHHhcCCCEEEEeCCChHHHHHHHHHCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCcHHH
Confidence 356666666777777656666677777777888886432 233322 233445555 555688888884 22
Q ss_pred hhHHhHHHcCCeEEEEccCc
Q 020934 242 TDIVYGNRNGFLTILTEPLS 261 (319)
Q Consensus 242 TDIlgAn~aGm~TILV~Pi~ 261 (319)
.=+.++..+|+.-.++.|-.
T Consensus 173 Sl~~~~~~~g~~~~~~~P~~ 192 (305)
T PRK00856 173 SNIQALTRLGAEVRLIAPPT 192 (305)
T ss_pred HHHHHHHHcCCEEEEECCcc
Confidence 34677777888777776543
No 219
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=47.26 E-value=2.2e+02 Score=28.19 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=55.5
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH-----HHHHHHHhC----CCCCceEEEcC--Cch-h
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT-----AEEIEKHFG----CQSSQLIMVGD--RPF-T 242 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~-----f~~ALk~lg----v~p~e~vmVGD--rl~-T 242 (319)
...|... +.++++-......++.+.+..++++|......=+|. +.-+.+.+| ++--.+++||| +.. .
T Consensus 91 arvls~y-~D~iviR~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~~v~~S 169 (338)
T PRK02255 91 ARVLSRL-VDIIMARVDRHQTVVELAKYATVPVINGMSDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQVCVS 169 (338)
T ss_pred HHHHHHh-CcEEEEecCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCchHHHH
Confidence 3444444 555555445555677788888999986433333442 223446663 65669999999 322 3
Q ss_pred hHHhHHHcCCeEEEEccCc
Q 020934 243 DIVYGNRNGFLTILTEPLS 261 (319)
Q Consensus 243 DIlgAn~aGm~TILV~Pi~ 261 (319)
-+.++.++|+...++.|-.
T Consensus 170 l~~~~~~~g~~v~~~~P~~ 188 (338)
T PRK02255 170 LMFIATKMGMDFVHFGPKG 188 (338)
T ss_pred HHHHHHhCCCEEEEECCCc
Confidence 5778888999988898754
No 220
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=46.33 E-value=2.5e+02 Score=27.82 Aligned_cols=87 Identities=15% Similarity=0.058 Sum_probs=59.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH-----HHHHHHH-hC-CCCCceEEEcCC----chh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT-----AEEIEKH-FG-CQSSQLIMVGDR----PFT 242 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~-----f~~ALk~-lg-v~p~e~vmVGDr----l~T 242 (319)
+...|... +.++++-......++.+.+..++++|......=+|. +.-+.+. .| ++--.+++|||- ...
T Consensus 93 Tarvls~y-~D~iviR~~~~~~~~~~a~~s~vPVINa~~~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~~v~~S 171 (332)
T PRK04284 93 TARVLGGM-YDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNNVANA 171 (332)
T ss_pred HHHHHHHh-CCEEEEecCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCCcchHHH
Confidence 34556555 667777666667788888888999986433333442 2234455 34 566799999994 334
Q ss_pred hHHhHHHcCCeEEEEccCc
Q 020934 243 DIVYGNRNGFLTILTEPLS 261 (319)
Q Consensus 243 DIlgAn~aGm~TILV~Pi~ 261 (319)
.+.++...|+.-.++.|-.
T Consensus 172 l~~~~~~~g~~v~~~~P~~ 190 (332)
T PRK04284 172 LMQGAAIMGMDFHLVCPKE 190 (332)
T ss_pred HHHHHHHcCCEEEEECCcc
Confidence 6888889999988998754
No 221
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=45.70 E-value=1.7e+02 Score=33.23 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEc
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTE 258 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~ 258 (319)
+-+++++. ..+-++||||-. +|+-+=+.|.+ +|.+.
T Consensus 759 IV~~lk~~--~~~~vl~iGDG~-ND~~mlk~AdV-GIgi~ 794 (1057)
T TIGR01652 759 VVRLVKKS--TGKTTLAIGDGA-NDVSMIQEADV-GVGIS 794 (1057)
T ss_pred HHHHHHhc--CCCeEEEEeCCC-ccHHHHhhcCe-eeEec
Confidence 44555554 136799999998 89988888865 34443
No 222
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=45.10 E-value=2e+02 Score=26.77 Aligned_cols=120 Identities=10% Similarity=0.069 Sum_probs=63.8
Q ss_pred ccccCCCCCceeEehhHHHHH--HHHHHccccccccceeeeeeeeccCCcccCcccc-CCcchhh-HHHHHHcCCcEEEE
Q 020934 113 EPRYNKDKYWTVLCTNMWWSQ--LKAALGQRINVEGIVSSTVVFAKDRHLALPHVTV-PDIRYID-WAELQRRGFKGLYE 188 (319)
Q Consensus 113 ~~~~~~~g~~~liiG~~WW~~--l~~~lg~~~n~~gI~~~a~vL~rd~~l~~P~~~v-~~i~~i~-l~~Lke~Gikl~I~ 188 (319)
+.+....|.+.+++|..-+.+ +++++...|+. .+..... .++.......+.. ....-.+ .+.+.+.|+.-++.
T Consensus 91 v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~-~ivvslD--~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~ 167 (234)
T PRK13587 91 IMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPG-RIYLSVD--AYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIY 167 (234)
T ss_pred HHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCC-CEEEEEE--eeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 566677899999999987764 46666666642 2222111 1222221221111 1222233 37777888887777
Q ss_pred ecCC---------HHHHHHHHHHhCCcEEEc-cCCCChHHHHHHHHHhCCCCCceEEEcCCc
Q 020934 189 YDND---------ASKARKLEGKIGIKVIRH-RVKKPAGTAEEIEKHFGCQSSQLIMVGDRP 240 (319)
Q Consensus 189 SNn~---------~~~v~~l~~~lGI~~I~~-~akKP~~~f~~ALk~lgv~p~e~vmVGDrl 240 (319)
++-+ ...++.+.+..+++++.. +...+. .+.+++ .+|+ ..++||=-+
T Consensus 168 tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~e-di~~l~-~~G~---~~vivG~a~ 224 (234)
T PRK13587 168 TDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQ-DIQRLA-SLNV---HAAIIGKAA 224 (234)
T ss_pred ecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHH-HHHHHH-HcCC---CEEEEhHHH
Confidence 6652 233566666678887753 333322 244433 3554 456666443
No 223
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=44.14 E-value=2.1e+02 Score=26.43 Aligned_cols=29 Identities=14% Similarity=0.005 Sum_probs=16.9
Q ss_pred cccCCCCCceeEehhHHHHH--HHHHHcccc
Q 020934 114 PRYNKDKYWTVLCTNMWWSQ--LKAALGQRI 142 (319)
Q Consensus 114 ~~~~~~g~~~liiG~~WW~~--l~~~lg~~~ 142 (319)
.+....|.+.+++|...+.+ +..++...|
T Consensus 90 ~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 90 RRLLRAGADKVSINSAAVANPELISEAADRF 120 (253)
T ss_pred HHHHHcCCCEEEEChhHhhCcHHHHHHHHHc
Confidence 33444677888888876653 344444444
No 224
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=43.83 E-value=2.5e+02 Score=25.36 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=45.3
Q ss_pred ccccCCCCCceeEehhHHHHH--HHHHHccccccccceeeeeeeeccCCcccCcccc-CCcchhhH-HHHHHcCCcEEEE
Q 020934 113 EPRYNKDKYWTVLCTNMWWSQ--LKAALGQRINVEGIVSSTVVFAKDRHLALPHVTV-PDIRYIDW-AELQRRGFKGLYE 188 (319)
Q Consensus 113 ~~~~~~~g~~~liiG~~WW~~--l~~~lg~~~n~~gI~~~a~vL~rd~~l~~P~~~v-~~i~~i~l-~~Lke~Gikl~I~ 188 (319)
+.+-...|++.+++|..-+.+ .+.++...++...+..... .++.......+.. .....+++ +.+.+.|...+++
T Consensus 87 ~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid--~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~ 164 (230)
T TIGR00007 87 VEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLD--ARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIY 164 (230)
T ss_pred HHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEE--EECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEE
Confidence 445556898888888665553 2444444444322221111 1221111111110 11222333 6678888886665
Q ss_pred ecCC---------HHHHHHHHHHhCCcEEE
Q 020934 189 YDND---------ASKARKLEGKIGIKVIR 209 (319)
Q Consensus 189 SNn~---------~~~v~~l~~~lGI~~I~ 209 (319)
++.+ ...++.+.+..+++++.
T Consensus 165 ~~~~~~g~~~g~~~~~i~~i~~~~~ipvia 194 (230)
T TIGR00007 165 TDISRDGTLSGPNFELTKELVKAVNVPVIA 194 (230)
T ss_pred EeecCCCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 5432 23345665666777664
No 225
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=43.55 E-value=1.4e+02 Score=31.33 Aligned_cols=91 Identities=10% Similarity=0.079 Sum_probs=54.8
Q ss_pred HHHHHHcCCcEEEEe-cCCHHHHHHHHHHhCCcEEEccCCCChHHHH---HHHHHhCCCCCceEEEcCCchhhHHhHHHc
Q 020934 175 WAELQRRGFKGLYEY-DNDASKARKLEGKIGIKVIRHRVKKPAGTAE---EIEKHFGCQSSQLIMVGDRPFTDIVYGNRN 250 (319)
Q Consensus 175 l~~Lke~Gikl~I~S-Nn~~~~v~~l~~~lGI~~I~~~akKP~~~f~---~ALk~lgv~p~e~vmVGDrl~TDIlgAn~a 250 (319)
+...++.+-+++++. .+....++.+..-||+++.......+. ... +-++.-|+ -++|||.+- +..|.++
T Consensus 90 l~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~-e~~~~~~~l~~~G~----~~viG~~~~--~~~A~~~ 162 (526)
T TIGR02329 90 LARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEE-DARSCVNDLRARGI----GAVVGAGLI--TDLAEQA 162 (526)
T ss_pred HHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHH-HHHHHHHHHHHCCC----CEEECChHH--HHHHHHc
Confidence 566666666776554 344556777878888874322222222 233 33344455 688899985 4567999
Q ss_pred CCeEEEEccCcCCCchhHHHHHHHHH
Q 020934 251 GFLTILTEPLSLAEEPFIVRQVRKLE 276 (319)
Q Consensus 251 Gm~TILV~Pi~~~~e~~~trl~R~lE 276 (319)
||.+|++... |.+...+.+.++
T Consensus 163 gl~~ili~s~----esi~~a~~~A~~ 184 (526)
T TIGR02329 163 GLHGVFLYSA----DSVRQAFDDALD 184 (526)
T ss_pred CCceEEEecH----HHHHHHHHHHHH
Confidence 9999999642 445444444443
No 226
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=43.02 E-value=3e+02 Score=26.81 Aligned_cols=86 Identities=20% Similarity=0.139 Sum_probs=58.3
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccC---CCChHH---HHHHHHHhC-CCCCceEEEcCC-----chh
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRV---KKPAGT---AEEIEKHFG-CQSSQLIMVGDR-----PFT 242 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~a---kKP~~~---f~~ALk~lg-v~p~e~vmVGDr-----l~T 242 (319)
...|... +.++++-......+..+.+..++++|.... .-|--. +.-+.+.+| ++--.+++|||- ...
T Consensus 89 a~vls~y-~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~~va~vGD~~~~~v~~S 167 (301)
T TIGR00670 89 IKTLSGY-SDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGDLKYGRTVHS 167 (301)
T ss_pred HHHHHHh-CCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEEccCCCCcHHHH
Confidence 4555555 666666556666777888888999886433 234322 233445666 455689999995 445
Q ss_pred hHHhHHHcCCeEEEEccCc
Q 020934 243 DIVYGNRNGFLTILTEPLS 261 (319)
Q Consensus 243 DIlgAn~aGm~TILV~Pi~ 261 (319)
-+.++.++|+...++.|-.
T Consensus 168 l~~~~a~~g~~v~~~~P~~ 186 (301)
T TIGR00670 168 LAEALTRFGVEVYLISPEE 186 (301)
T ss_pred HHHHHHHcCCEEEEECCcc
Confidence 6888899999988888765
No 227
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=42.63 E-value=2.2e+02 Score=30.17 Aligned_cols=92 Identities=9% Similarity=-0.004 Sum_probs=56.2
Q ss_pred HHHHHHcCCcEEEEe-cCCHHHHHHHHHHhCCcEEEccCCCChH-H-HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcC
Q 020934 175 WAELQRRGFKGLYEY-DNDASKARKLEGKIGIKVIRHRVKKPAG-T-AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNG 251 (319)
Q Consensus 175 l~~Lke~Gikl~I~S-Nn~~~~v~~l~~~lGI~~I~~~akKP~~-~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aG 251 (319)
+...++.+-+++|+. .+....++.+.+-||+++.......+.- . ..+.++..|+ -++|||-+- +..|..+|
T Consensus 100 l~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~G~----~~vvG~~~~--~~~A~~~g 173 (538)
T PRK15424 100 LARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKANGI----EAVVGAGLI--TDLAEEAG 173 (538)
T ss_pred HHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCC----CEEEcCchH--HHHHHHhC
Confidence 566666666777654 3445667788788888743222223322 1 2234455565 588899884 56799999
Q ss_pred CeEEEEccCcCCCchhHHHHHHHHH
Q 020934 252 FLTILTEPLSLAEEPFIVRQVRKLE 276 (319)
Q Consensus 252 m~TILV~Pi~~~~e~~~trl~R~lE 276 (319)
+.++++.. .|.+...+.+.+|
T Consensus 174 ~~g~~~~s----~e~i~~a~~~A~~ 194 (538)
T PRK15424 174 MTGIFIYS----AATVRQAFEDALD 194 (538)
T ss_pred CceEEecC----HHHHHHHHHHHHH
Confidence 99999972 2455444444444
No 228
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=42.60 E-value=91 Score=24.31 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=37.8
Q ss_pred cCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH-HHHHHHHhCCCCCceEEEcC
Q 020934 181 RGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQSSQLIMVGD 238 (319)
Q Consensus 181 ~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk~lgv~p~e~vmVGD 238 (319)
.++.+++--+.+++.+..+++.+|+..|..+..|=... +.++++.+. +-..++|.=|
T Consensus 10 ~~~~~lvS~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk-~G~~~~itpD 67 (74)
T PF04028_consen 10 RKIAALVSRSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALK-EGYSIAITPD 67 (74)
T ss_pred CCEEEEEccCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHH-CCCeEEEeCC
Confidence 33433444456788899999999999997665555444 666777765 3455666555
No 229
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=42.13 E-value=3.2e+02 Score=26.54 Aligned_cols=86 Identities=19% Similarity=0.233 Sum_probs=57.5
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH--H---HHHHHHhC-CCCCceEEEcC--Cc-hhhHH
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT--A---EEIEKHFG-CQSSQLIMVGD--RP-FTDIV 245 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~--f---~~ALk~lg-v~p~e~vmVGD--rl-~TDIl 245 (319)
...|... +.++++-......++.+.+..++++|......=+|. + .-+.+.+| ++--.+++||| +. ...+.
T Consensus 88 ~~vls~y-~D~iv~R~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~l~g~~v~~vGd~~~v~~Sl~~ 166 (304)
T TIGR00658 88 ARVLSRY-VDGIMARVYKHEDVEELAKYASVPVINGLTDLFHPCQALADLLTIIEHFGKLKGVKVVYVGDGNNVCNSLML 166 (304)
T ss_pred HHHHHHh-CCEEEEECCChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCCcEEEEEeCCCchHHHHHH
Confidence 4555555 666666666666778888889999986433333442 2 23445566 55557999999 32 23688
Q ss_pred hHHHcCCeEEEEccCc
Q 020934 246 YGNRNGFLTILTEPLS 261 (319)
Q Consensus 246 gAn~aGm~TILV~Pi~ 261 (319)
++.+.|+...++.|-.
T Consensus 167 ~l~~~g~~v~~~~P~~ 182 (304)
T TIGR00658 167 AGAKLGMDVVVATPEG 182 (304)
T ss_pred HHHHcCCEEEEECCch
Confidence 8889999888888754
No 230
>PLN02423 phosphomannomutase
Probab=42.12 E-value=32 Score=31.91 Aligned_cols=40 Identities=8% Similarity=-0.030 Sum_probs=32.9
Q ss_pred HHHHHhCCCCCceEEEcCC---chhhHHhHHHcCCeEEEEccCc
Q 020934 221 EIEKHFGCQSSQLIMVGDR---PFTDIVYGNRNGFLTILTEPLS 261 (319)
Q Consensus 221 ~ALk~lgv~p~e~vmVGDr---l~TDIlgAn~aGm~TILV~Pi~ 261 (319)
.|++.+. +++|++.+||+ -.+|+.+=+..|+.++-|+...
T Consensus 192 ~al~~L~-~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~~ 234 (245)
T PLN02423 192 YCLQFLE-DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSPD 234 (245)
T ss_pred HHHHHhc-CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCHH
Confidence 4566666 99999999995 3489999999999999997654
No 231
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=42.02 E-value=84 Score=30.80 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=45.8
Q ss_pred hHHHHHHcCCcEE-EEecC-CHHHHHHHHH---HhCCcEEEccCCCChHH---HHHHHHHhCCCCCceEEEcCCchhh
Q 020934 174 DWAELQRRGFKGL-YEYDN-DASKARKLEG---KIGIKVIRHRVKKPAGT---AEEIEKHFGCQSSQLIMVGDRPFTD 243 (319)
Q Consensus 174 ~l~~Lke~Gikl~-I~SNn-~~~~v~~l~~---~lGI~~I~~~akKP~~~---f~~ALk~lgv~p~e~vmVGDrl~TD 243 (319)
.++.|...|++=+ |++.. +....+.++. .+|+.+-+.-..+|..- +..+.+..| +-.=+++.||+++.|
T Consensus 37 ~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~fv~-~~~f~l~LGDNi~~~ 113 (286)
T COG1209 37 PLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFVG-DDDFVLYLGDNIFQD 113 (286)
T ss_pred HHHHHHHcCCceEEEEecCCchhhhhhhhcCccccCcceEEEecCCCCcHHHHHHHHHhhcC-CCceEEEecCceecc
Confidence 5799999999754 55544 6667776653 46776543346777762 443444444 356789999999877
No 232
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=41.76 E-value=35 Score=38.77 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=49.9
Q ss_pred CCcchhhHHHHHHcCCcEE-EEecC----CHHHHHHHH--------HHhCCcEEEccCCCChHH-HHHHHHHhCCCCCce
Q 020934 168 PDIRYIDWAELQRRGFKGL-YEYDN----DASKARKLE--------GKIGIKVIRHRVKKPAGT-AEEIEKHFGCQSSQL 233 (319)
Q Consensus 168 ~~i~~i~l~~Lke~Gikl~-I~SNn----~~~~v~~l~--------~~lGI~~I~~~akKP~~~-f~~ALk~lgv~p~e~ 233 (319)
|..+...++....+||+++ +++-+ +...++++. +-+|+-+. ...-|+... ..+.|.+.++ +-+
T Consensus 649 P~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVm-eNkLK~~T~~VI~eL~~AnI--RtV 725 (1140)
T KOG0208|consen 649 PADYQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVM-ENKLKEETKRVIDELNRANI--RTV 725 (1140)
T ss_pred CccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEe-ecccccccHHHHHHHHhhcc--eEE
Confidence 4444566889999999986 44311 222333221 22344333 345566653 4445555555 444
Q ss_pred EEEcCCchhhHHhHHHcCC
Q 020934 234 IMVGDRPFTDIVYGNRNGF 252 (319)
Q Consensus 234 vmVGDrl~TDIlgAn~aGm 252 (319)
..-||++.|-|--|+..||
T Consensus 726 McTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 726 MCTGDNLLTAISVAKECGM 744 (1140)
T ss_pred EEcCCchheeeehhhcccc
Confidence 5559999999999999998
No 233
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=40.59 E-value=25 Score=30.70 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=25.5
Q ss_pred cccCccccCCcchhhHHHHHHcCCcEEE
Q 020934 160 LALPHVTVPDIRYIDWAELQRRGFKGLY 187 (319)
Q Consensus 160 l~~P~~~v~~i~~i~l~~Lke~Gikl~I 187 (319)
++.|++++.++..|+.+.|++.|+++++
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~v~~vv 29 (170)
T TIGR01668 2 FCLPHAIVKTLNDLTIDLLKKVGIKGVV 29 (170)
T ss_pred CcCcccccCchhhCCHHHHHHCCCCEEE
Confidence 5789999999999999999999999864
No 234
>PLN03190 aminophospholipid translocase; Provisional
Probab=40.06 E-value=2.3e+02 Score=32.91 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEccCc-----CCCchhHHHHHHHHHHHHHH
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTEPLS-----LAEEPFIVRQVRKLEVTIVN 281 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~Pi~-----~~~e~~~trl~R~lEr~il~ 281 (319)
+-+++++.+ ..-++||||-. +|+-+=+.|.+ +|.+.+.. ...|....+ +|++.|.++.
T Consensus 862 IV~~vk~~~--~~vtlaIGDGa-NDv~mIq~AdV-GIGIsG~EG~qA~~aSDfaI~~-Fr~L~rLLlv 924 (1178)
T PLN03190 862 IVALVKNRT--SDMTLAIGDGA-NDVSMIQMADV-GVGISGQEGRQAVMASDFAMGQ-FRFLVPLLLV 924 (1178)
T ss_pred HHHHHHhcC--CcEEEEECCCc-chHHHHHhcCe-eeeecCchhHHHHHhhccchhh-hHHHHHHHHH
Confidence 334454433 24689999998 89999888865 33443322 122444444 7888888773
No 235
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=39.83 E-value=93 Score=30.07 Aligned_cols=78 Identities=13% Similarity=0.306 Sum_probs=46.1
Q ss_pred hHHHHHHc----CCcEEEEecCCH---H-HHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHH
Q 020934 174 DWAELQRR----GFKGLYEYDNDA---S-KARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIV 245 (319)
Q Consensus 174 ~l~~Lke~----Gikl~I~SNn~~---~-~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIl 245 (319)
.++.|++. |++..++||+.+ . .++.+.+.+|+++-....--+.......++.++ ..+++||-.-..+
T Consensus 24 al~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~~~~~~ll~~~~---~~v~viG~~~~~~-- 98 (321)
T TIGR01456 24 ALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSHSPYKSLVNKYE---KRILAVGTGSVRG-- 98 (321)
T ss_pred HHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhhHHHHHHHHHcC---CceEEEeChHHHH--
Confidence 57889988 999999999873 3 345566888986310000001112233344443 3688898765433
Q ss_pred hHHHcCCeEEE
Q 020934 246 YGNRNGFLTIL 256 (319)
Q Consensus 246 gAn~aGm~TIL 256 (319)
.+..+|+..+.
T Consensus 99 ~l~~~G~~~vv 109 (321)
T TIGR01456 99 VAEGYGFQNVV 109 (321)
T ss_pred HHHHcCCcccc
Confidence 44478887663
No 236
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=39.26 E-value=2.1e+02 Score=26.77 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=44.0
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhH----------
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDI---------- 244 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDI---------- 244 (319)
+++|+ .+..+.+++++... .+ +.+|+..+. ... ...+.+++++.+ -+++.|..++.|.
T Consensus 22 l~~l~-~~~~~~v~s~~p~~-~~---~~~~v~~~~--r~~-~~~~~~~l~~~D----~vI~gGG~l~~d~~~~~~~~~~~ 89 (298)
T TIGR03609 22 LRELP-PGVEPTVLSNDPAE-TA---KLYGVEAVN--RRS-LLAVLRALRRAD----VVIWGGGSLLQDVTSFRSLLYYL 89 (298)
T ss_pred HHhcC-CCCeEEEecCChHH-HH---hhcCceEEc--cCC-HHHHHHHHHHCC----EEEECCcccccCCcccccHHHHH
Confidence 45554 56777777755533 32 345887652 111 122455555543 4788889888883
Q ss_pred ---HhHHHcCCeEEEE-ccCc
Q 020934 245 ---VYGNRNGFLTILT-EPLS 261 (319)
Q Consensus 245 ---lgAn~aGm~TILV-~Pi~ 261 (319)
..|+..|.+.+++ .+++
T Consensus 90 ~~~~~a~~~~k~~~~~g~giG 110 (298)
T TIGR03609 90 GLMRLARLFGKPVILWGQGIG 110 (298)
T ss_pred HHHHHHHHcCCCEEEEecccC
Confidence 3467789887776 3444
No 237
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=38.45 E-value=39 Score=33.53 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=50.8
Q ss_pred CCCCceEEEcCCchhhHHhHHHcCCeEEEEccCcCCCchhHHHHHHHHHHHHHHHHH---hcCCCCCCCCCCcccccccc
Q 020934 228 CQSSQLIMVGDRPFTDIVYGNRNGFLTILTEPLSLAEEPFIVRQVRKLEVTIVNRWF---RRGLKPISHNLLPDAMQCVK 304 (319)
Q Consensus 228 v~p~e~vmVGDrl~TDIlgAn~aGm~TILV~Pi~~~~e~~~trl~R~lEr~il~~l~---~kg~~~~~~~~~~~~~~~~~ 304 (319)
+.-.++++|||.=.|-|..|.--=..-|.|--+. |....-++|..|..=+.... ..-..|.++.+.-.-+.|+.
T Consensus 151 L~gK~I~vvGDDDLtsia~aLt~mpk~iaVvDID---ERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 151 LEGKEIFVVGDDDLTSIALALTGMPKRIAVVDID---ERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred cCCCeEEEEcCchhhHHHHHhcCCCceEEEEech---HHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec
Confidence 4567899999998888887764444578776654 43443344444443222121 13445666777778889999
Q ss_pred CCCCC
Q 020934 305 DPPSL 309 (319)
Q Consensus 305 ~~~~~ 309 (319)
+||.-
T Consensus 228 DPpeT 232 (354)
T COG1568 228 DPPET 232 (354)
T ss_pred Cchhh
Confidence 99964
No 238
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=38.31 E-value=2.6e+02 Score=25.06 Aligned_cols=19 Identities=11% Similarity=-0.178 Sum_probs=12.5
Q ss_pred cccCCCCCceeEehhHHHH
Q 020934 114 PRYNKDKYWTVLCTNMWWS 132 (319)
Q Consensus 114 ~~~~~~g~~~liiG~~WW~ 132 (319)
.+....|++.+++|..-+.
T Consensus 89 ~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 89 ERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHcCCCEEEECchHHh
Confidence 3444578888888776554
No 239
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=38.13 E-value=3.2e+02 Score=24.98 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=21.4
Q ss_pred CceEEEcCCc-hhhHHhHHHc-CCeEEEE-ccCc
Q 020934 231 SQLIMVGDRP-FTDIVYGNRN-GFLTILT-EPLS 261 (319)
Q Consensus 231 ~e~vmVGDrl-~TDIlgAn~a-Gm~TILV-~Pi~ 261 (319)
-.++..|+=- ..|+...... |++.+.| +++.
T Consensus 194 ~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~ 227 (243)
T cd04731 194 IPVIASGGAGKPEHFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred CCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHH
Confidence 3577788754 2488877776 8888888 4554
No 240
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=37.89 E-value=1.5e+02 Score=28.63 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=56.8
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHH-h---CCc-EEE-----ccCCCChHH-HHHHHHHhCCCCCceEEEcCCchh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGK-I---GIK-VIR-----HRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFT 242 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~-l---GI~-~I~-----~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~T 242 (319)
.++.-+..|++++|- +.+-..+++++-. - ++. ++. .-..|-... +.++.+.+|.+++|+++.-|-. .
T Consensus 131 a~e~w~~~g~~vyIY-SSgsv~AqKllfg~s~~gdl~~y~~gyfDt~iG~K~e~~sy~~I~~~Ig~s~~eiLfLTd~~-~ 208 (254)
T KOG2630|consen 131 AIERWSGEGVRVYIY-SSGSVAAQKLLFGYSDAGDLRKYISGYFDTTIGLKVESQSYKKIGHLIGKSPREILFLTDVP-R 208 (254)
T ss_pred HHHHHhhcCceEEEE-cCCcHHHHHHHHcccCcchHHHHhhhhhhccccceehhHHHHHHHHHhCCChhheEEeccCh-H
Confidence 357778899987765 4554555544321 1 111 111 123444444 7888999999999999999998 6
Q ss_pred hHHhHHHcCCeEEEE
Q 020934 243 DIVYGNRNGFLTILT 257 (319)
Q Consensus 243 DIlgAn~aGm~TILV 257 (319)
.-.+|..+|+.++++
T Consensus 209 Ea~aa~~aGl~a~l~ 223 (254)
T KOG2630|consen 209 EAAAARKAGLQAGLV 223 (254)
T ss_pred HHHHHHhcccceeee
Confidence 899999999999988
No 241
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=36.58 E-value=40 Score=31.26 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=24.4
Q ss_pred hhhHHHHHH-cCCcEEEEecCCHHH-HHHHHHHhCCcEEE
Q 020934 172 YIDWAELQR-RGFKGLYEYDNDASK-ARKLEGKIGIKVIR 209 (319)
Q Consensus 172 ~i~l~~Lke-~Gikl~I~SNn~~~~-v~~l~~~lGI~~I~ 209 (319)
..+++.|.. .|+..+|+||.+..+ ++.+.+.+|..+..
T Consensus 44 ~~~~~~l~a~ggv~~IvLTn~dHvR~A~~ya~~~~a~i~~ 83 (199)
T PF14597_consen 44 AHDWKHLDALGGVAWIVLTNRDHVRAAEDYAEQTGAKIYG 83 (199)
T ss_dssp HHHHHHHHHTT--SEEE-SSGGG-TTHHHHHHHS--EEEE
T ss_pred HHHHHHHHhcCCceEEEEeCChhHhHHHHHHHHhCCeeec
Confidence 457899988 667888999887665 45788889988654
No 242
>PF15342 FAM212: FAM212 family
Probab=35.63 E-value=22 Score=27.10 Aligned_cols=18 Identities=33% Similarity=0.613 Sum_probs=15.9
Q ss_pred CCCceEEEcCCchhhHHh
Q 020934 229 QSSQLIMVGDRPFTDIVY 246 (319)
Q Consensus 229 ~p~e~vmVGDrl~TDIlg 246 (319)
...|.++.||+.|.|.++
T Consensus 36 RnRQPLVLGDN~FADLV~ 53 (62)
T PF15342_consen 36 RNRQPLVLGDNVFADLVG 53 (62)
T ss_pred ccCCCeeecccHHHHHHH
Confidence 457999999999999886
No 243
>PLN02887 hydrolase family protein
Probab=34.61 E-value=73 Score=33.96 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=39.8
Q ss_pred eeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHHHhCC
Q 020934 153 VFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEGKIGI 205 (319)
Q Consensus 153 vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI 205 (319)
+.+-|.||+..+..+.......+++|+++|+.++++|......+..+.+.+|+
T Consensus 312 a~DLDGTLLn~d~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l 364 (580)
T PLN02887 312 FCDMDGTLLNSKSQISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDL 364 (580)
T ss_pred EEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCc
Confidence 34667888766555543334458999999999999998888888888887765
No 244
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=34.20 E-value=34 Score=26.17 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCCCceEEEcCCch
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPF 241 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~ 241 (319)
+.++|++.|+++..+|.|||--|
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~eF 67 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGDYEF 67 (69)
T ss_dssp HHHHHHTTT--TT-EEEETTEEE
T ss_pred HHHHHHHcCCCCCCEEEEcCEEE
Confidence 46788899999999999999654
No 245
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.11 E-value=63 Score=34.21 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=55.1
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHh--------CCcEEEccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHH
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKI--------GIKVIRHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIV 245 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~l--------GI~~I~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIl 245 (319)
...|+++|+-++|+|-|+...++.+.... ++.+....+ -|... ++++++++++..+..|+|-|++. .-.
T Consensus 264 Ik~l~kqGVlLav~SKN~~~da~evF~khp~MiLkeedfa~~~iNW-~~K~eNirkIAkklNlg~dSmvFiDD~p~-ErE 341 (574)
T COG3882 264 IKGLKKQGVLLAVCSKNTEKDAKEVFRKHPDMILKEEDFAVFQINW-DPKAENIRKIAKKLNLGLDSMVFIDDNPA-ERE 341 (574)
T ss_pred HHHHHhccEEEEEecCCchhhHHHHHhhCCCeEeeHhhhhhheecC-CcchhhHHHHHHHhCCCccceEEecCCHH-HHH
Confidence 47899999999999988877777554332 222221112 35555 88999999999999999999985 333
Q ss_pred hHHHcCCeEEEEccCc
Q 020934 246 YGNRNGFLTILTEPLS 261 (319)
Q Consensus 246 gAn~aGm~TILV~Pi~ 261 (319)
--++-+= |-|.++.
T Consensus 342 ~vk~~~~--v~Vi~~~ 355 (574)
T COG3882 342 LVKRELP--VSVIEFP 355 (574)
T ss_pred HHHhcCc--eeeccCC
Confidence 3333332 4444443
No 246
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=33.95 E-value=1.8e+02 Score=27.48 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=50.1
Q ss_pred HHHHHHcCCcEEEEecCCHHHHH---HHHHHhCCcEE-----------------------------EccCCCChHH-HHH
Q 020934 175 WAELQRRGFKGLYEYDNDASKAR---KLEGKIGIKVI-----------------------------RHRVKKPAGT-AEE 221 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~---~l~~~lGI~~I-----------------------------~~~akKP~~~-f~~ 221 (319)
++.|+++|++++.+|.-...... +-++.+||.+- ....+=+.+. +..
T Consensus 90 i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~ 169 (252)
T PF11019_consen 90 INSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKY 169 (252)
T ss_pred HHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHH
Confidence 68899999998877644322211 22244666421 0122233344 778
Q ss_pred HHHHhCCCCCceEEEcCCchh--hHHhH-HHcCCeEEEE
Q 020934 222 IEKHFGCQSSQLIMVGDRPFT--DIVYG-NRNGFLTILT 257 (319)
Q Consensus 222 ALk~lgv~p~e~vmVGDrl~T--DIlgA-n~aGm~TILV 257 (319)
.++++|..|+.++||.|+... +|..| +..|+..+.+
T Consensus 170 fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~ 208 (252)
T PF11019_consen 170 FLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGF 208 (252)
T ss_pred HHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEE
Confidence 899999999999999999753 22222 3356665544
No 247
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=33.77 E-value=2.5e+02 Score=27.14 Aligned_cols=125 Identities=15% Similarity=0.028 Sum_probs=71.2
Q ss_pred ccccCCCCCceeEehhHHHHH------HHHHHccccccccceeeeeeeeccC--CcccCcc-ccCCcchhhH-HHHHHcC
Q 020934 113 EPRYNKDKYWTVLCTNMWWSQ------LKAALGQRINVEGIVSSTVVFAKDR--HLALPHV-TVPDIRYIDW-AELQRRG 182 (319)
Q Consensus 113 ~~~~~~~g~~~liiG~~WW~~------l~~~lg~~~n~~gI~~~a~vL~rd~--~l~~P~~-~v~~i~~i~l-~~Lke~G 182 (319)
+.+....|.+.+++|..-+.+ +++++...|+...|......--.+. ..+...+ ...+...++| ..+.+.|
T Consensus 97 i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g 176 (262)
T PLN02446 97 AMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAY 176 (262)
T ss_pred HHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhC
Confidence 566778999999999887754 6776767765444332211100011 2223322 2244445565 7888899
Q ss_pred CcEEEEecCC---------HHHHHHHHHHhCCcEEEc-cCCCChHHHHHHHHHhCCCCCceEEEcCCc
Q 020934 183 FKGLYEYDND---------ASKARKLEGKIGIKVIRH-RVKKPAGTAEEIEKHFGCQSSQLIMVGDRP 240 (319)
Q Consensus 183 ikl~I~SNn~---------~~~v~~l~~~lGI~~I~~-~akKP~~~f~~ALk~lgv~p~e~vmVGDrl 240 (319)
+.-++.||-+ .+.++.+.+..+++++.. +..... .+ +.|+.+|.. -.-++||=-+
T Consensus 177 ~~eii~TdI~rDGtl~G~d~el~~~l~~~~~ipVIASGGv~sle-Di-~~L~~~g~g-~~gvIvGkAl 241 (262)
T PLN02446 177 CDEFLVHGVDVEGKRLGIDEELVALLGEHSPIPVTYAGGVRSLD-DL-ERVKVAGGG-RVDVTVGSAL 241 (262)
T ss_pred CCEEEEEEEcCCCcccCCCHHHHHHHHhhCCCCEEEECCCCCHH-HH-HHHHHcCCC-CEEEEEEeeH
Confidence 8888777532 234577888889998853 343322 13 234455411 2347777665
No 248
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=33.75 E-value=20 Score=28.66 Aligned_cols=19 Identities=32% Similarity=0.691 Sum_probs=15.4
Q ss_pred cccccCCCCcccccccCCC
Q 020934 5 SVSAALPSSSCHYCYPVPN 23 (319)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (319)
-+|+|.++.+|+-||||..
T Consensus 15 VaAaq~~~gscs~C~~ls~ 33 (79)
T PF07213_consen 15 VAAAQTQPGSCSGCYPLSP 33 (79)
T ss_pred HhhhcCCCCCCCCccccCH
Confidence 3567888889999999974
No 249
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=32.70 E-value=48 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCCCceEEEcCCch
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPF 241 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~ 241 (319)
+.++|++.|+++..+|.|||-.|
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~eF 67 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGDFEF 67 (69)
T ss_pred HHHHHHHcCCCCCCEEEEccEEE
Confidence 57899999999999999999654
No 250
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=31.49 E-value=3.5e+02 Score=23.45 Aligned_cols=87 Identities=22% Similarity=0.293 Sum_probs=49.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHH---HHHHHH-----hCCc--E-EE-----c-------cCCCChH-H---HHHHHHHh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKA---RKLEGK-----IGIK--V-IR-----H-------RVKKPAG-T---AEEIEKHF 226 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v---~~l~~~-----lGI~--~-I~-----~-------~akKP~~-~---f~~ALk~l 226 (319)
.+..|+++|++++++|.-....+ +.+++. .+++ + +. . -.++|.. + +..+++.+
T Consensus 35 a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~ 114 (157)
T smart00775 35 LYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLF 114 (157)
T ss_pred HHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhc
Confidence 47999999999999987665544 355555 3353 2 21 0 1234422 1 22333333
Q ss_pred CCCCCceE-EEcCCchhhHHhHHHcCCeE---EEEccCc
Q 020934 227 GCQSSQLI-MVGDRPFTDIVYGNRNGFLT---ILTEPLS 261 (319)
Q Consensus 227 gv~p~e~v-mVGDrl~TDIlgAn~aGm~T---ILV~Pi~ 261 (319)
.-.-...+ .+||+. ||+..=..+|+.. ..|.|.+
T Consensus 115 ~~~~~~f~~~~gn~~-~D~~~y~~~gi~~~~i~~i~~~~ 152 (157)
T smart00775 115 PPQGNPFYAGFGNRI-TDVISYSAVGIPPSRIFTINPKG 152 (157)
T ss_pred CCCCCCEEEEeCCCc-hhHHHHHHcCCChhhEEEECCCC
Confidence 21112333 467776 8999999999973 3444543
No 251
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=30.92 E-value=4.8e+02 Score=29.22 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=48.9
Q ss_pred HHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH---HHHHHHHhCCCCCceEEE-cCCchhhHHhHHHcC
Q 020934 176 AELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT---AEEIEKHFGCQSSQLIMV-GDRPFTDIVYGNRNG 251 (319)
Q Consensus 176 ~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~---f~~ALk~lgv~p~e~vmV-GDrl~TDIlgAn~aG 251 (319)
+.|++.|+.+..+ .++..+-........++|.....-|... +.+.++..+... -+++| ++....+...+.++|
T Consensus 819 ~~L~~~G~~v~~a--~~g~eal~~l~~~~~DlVl~D~~mP~mdG~el~~~ir~~~~~~-pII~lTa~~~~~~~~~~~~aG 895 (924)
T PRK10841 819 DQLGSLGYQCKTA--NDGVDALNVLSKNHIDIVLTDVNMPNMDGYRLTQRLRQLGLTL-PVIGVTANALAEEKQRCLEAG 895 (924)
T ss_pred HHHHHcCCEEEEE--CCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCC-CEEEEECCCCHHHHHHHHHCC
Confidence 6677778865554 3334443333443444443334445432 344555544322 34555 444456788899999
Q ss_pred CeEEEEccCcC
Q 020934 252 FLTILTEPLSL 262 (319)
Q Consensus 252 m~TILV~Pi~~ 262 (319)
+..++.+|+..
T Consensus 896 ~d~~L~KPv~~ 906 (924)
T PRK10841 896 MDSCLSKPVTL 906 (924)
T ss_pred CCEEEeCCCCH
Confidence 99999999873
No 252
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=30.63 E-value=2.1e+02 Score=26.38 Aligned_cols=96 Identities=21% Similarity=0.150 Sum_probs=54.6
Q ss_pred ccccCCCCCceeEehhHHHHH--HHHHHccccccccceeeeeeeeccC-CcccC-ccccCCcchhh-HHHHHHcCCcEEE
Q 020934 113 EPRYNKDKYWTVLCTNMWWSQ--LKAALGQRINVEGIVSSTVVFAKDR-HLALP-HVTVPDIRYID-WAELQRRGFKGLY 187 (319)
Q Consensus 113 ~~~~~~~g~~~liiG~~WW~~--l~~~lg~~~n~~gI~~~a~vL~rd~-~l~~P-~~~v~~i~~i~-l~~Lke~Gikl~I 187 (319)
+.+....|++.+++|..-+.+ +.+++...|+...+..... .++. ..+.. |.........+ ++.+.+.|+.-++
T Consensus 88 ~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD--~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii 165 (229)
T PF00977_consen 88 AERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLD--ARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEII 165 (229)
T ss_dssp HHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEE--EEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEE
T ss_pred HHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEE--eeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEE
Confidence 567778899999999887764 5666666666544432211 1221 11111 11111222333 4888999999888
Q ss_pred EecCC---------HHHHHHHHHHhCCcEEEc
Q 020934 188 EYDND---------ASKARKLEGKIGIKVIRH 210 (319)
Q Consensus 188 ~SNn~---------~~~v~~l~~~lGI~~I~~ 210 (319)
++|-+ ...++.+.+..+++++..
T Consensus 166 ~tdi~~dGt~~G~d~~~~~~l~~~~~~~vias 197 (229)
T PF00977_consen 166 LTDIDRDGTMQGPDLELLKQLAEAVNIPVIAS 197 (229)
T ss_dssp EEETTTTTTSSS--HHHHHHHHHHHSSEEEEE
T ss_pred EeeccccCCcCCCCHHHHHHHHHHcCCCEEEe
Confidence 87642 234567777789988753
No 253
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=30.50 E-value=1.1e+02 Score=34.71 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=50.2
Q ss_pred CcchhhHHHHHHcCCcEE-EEecCCH----HHHHH-----HHHHh---CCcEEEccCCCChHHHHHHHHHhCCCCCceEE
Q 020934 169 DIRYIDWAELQRRGFKGL-YEYDNDA----SKARK-----LEGKI---GIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIM 235 (319)
Q Consensus 169 ~i~~i~l~~Lke~Gikl~-I~SNn~~----~~v~~-----l~~~l---GI~~I~~~akKP~~~f~~ALk~lgv~p~e~vm 235 (319)
..++.......++|.+++ +..-.-+ .+++. ++..| |.-++ ..--||+. ...++.++-..++++|
T Consensus 620 ~dY~~iYk~ytR~GsRVLALg~K~l~~~~~~q~rd~~Re~vEsdLtFaGFlif-~CPlK~Ds--~~~I~el~~SSH~vvM 696 (1160)
T KOG0209|consen 620 KDYDEIYKRYTRQGSRVLALGYKPLGDMMVSQVRDLKREDVESDLTFAGFLIF-SCPLKPDS--KKTIKELNNSSHRVVM 696 (1160)
T ss_pred hhHHHHHHHHhhccceEEEEecccccccchhhhhhhhhhhhhhcceeeeeEEE-eCCCCccH--HHHHHHHhccCceEEE
Confidence 334455788889999986 3321111 23332 22222 22222 33456665 4556666666788888
Q ss_pred E-cCCchhhHHhHHHcCCe
Q 020934 236 V-GDRPFTDIVYGNRNGFL 253 (319)
Q Consensus 236 V-GDrl~TDIlgAn~aGm~ 253 (319)
| ||+..|-.--|+..|+-
T Consensus 697 ITGDnpLTAchVak~v~iv 715 (1160)
T KOG0209|consen 697 ITGDNPLTACHVAKEVGIV 715 (1160)
T ss_pred EeCCCccchheehheeeee
Confidence 7 99999999999999984
No 254
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=30.10 E-value=1.7e+02 Score=33.03 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=53.8
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcE----E--------------------------EccCCCChHH--HHHH
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKV----I--------------------------RHRVKKPAGT--AEEI 222 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~----I--------------------------~~~akKP~~~--f~~A 222 (319)
.+.+++.|+++.++|.-+...++.|.+.+|+.- + .....-|..+ +-++
T Consensus 593 i~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P~HK~kIVea 672 (972)
T KOG0202|consen 593 IELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEPQHKLKIVEA 672 (972)
T ss_pred HHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecCchhHHHHHHH
Confidence 699999999999998777777888888877630 0 1233456554 6678
Q ss_pred HHHhCCCCCceEEEcCCchhhHHhHHHcC
Q 020934 223 EKHFGCQSSQLIMVGDRPFTDIVYGNRNG 251 (319)
Q Consensus 223 Lk~lgv~p~e~vmVGDrl~TDIlgAn~aG 251 (319)
|++.| +=++|-||-. +|--+=+.|.
T Consensus 673 Lq~~g---eivAMTGDGV-NDApALK~Ad 697 (972)
T KOG0202|consen 673 LQSRG---EVVAMTGDGV-NDAPALKKAD 697 (972)
T ss_pred HHhcC---CEEEecCCCc-cchhhhhhcc
Confidence 88877 6899999998 7877666553
No 255
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=30.03 E-value=1.5e+02 Score=26.24 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=29.9
Q ss_pred HHHHHHcCCcEEEEecCCHH--------HHHHHHHHhCCcEEEccCCCC
Q 020934 175 WAELQRRGFKGLYEYDNDAS--------KARKLEGKIGIKVIRHRVKKP 215 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~--------~v~~l~~~lGI~~I~~~akKP 215 (319)
..+|++.|++++++-|+... .++.+.+.+|++++...+++=
T Consensus 98 ~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~ 146 (156)
T PF02421_consen 98 TLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTG 146 (156)
T ss_dssp HHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTT
T ss_pred HHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCC
Confidence 37889999999999887532 356888899999886555543
No 256
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=30.01 E-value=25 Score=26.90 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=13.9
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhH
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYG 247 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgA 247 (319)
....|+++|+ .|++||++ .||...
T Consensus 7 VqQLLK~fG~----~IY~gdr~-~DielM 30 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDRL-WDIELM 30 (62)
T ss_dssp HHHHHHTTS---------S-HH-HHHHHH
T ss_pred HHHHHHHCCE----EEEeCChH-HHHHHH
Confidence 5678888887 89999998 588764
No 257
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=29.54 E-value=90 Score=29.90 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=46.3
Q ss_pred CCCChHHHHH---HHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEccCcCCCchhHHHHHHHHHHHHHHHHH---h
Q 020934 212 VKKPAGTAEE---IEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTEPLSLAEEPFIVRQVRKLEVTIVNRWF---R 285 (319)
Q Consensus 212 akKP~~~f~~---ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~Pi~~~~e~~~trl~R~lEr~il~~l~---~ 285 (319)
..+|...+.+ ++++..+.-+++++|||.=.|=|..|....-..|.|--+. |.+..-+.+..++.=+. +. .
T Consensus 24 ~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiD---eRll~fI~~~a~~~gl~-i~~~~~ 99 (243)
T PF01861_consen 24 YATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDID---ERLLDFINRVAEEEGLP-IEAVHY 99 (243)
T ss_dssp -B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S----HHHHHHHHHHHHHHT---EEEE--
T ss_pred cccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcC---HHHHHHHHHHHHHcCCc-eEEEEe
Confidence 4456554433 3345557789999999998899999976666678776654 32333333333332111 11 1
Q ss_pred cCCCCCCCCCCccccccccCCCCC
Q 020934 286 RGLKPISHNLLPDAMQCVKDPPSL 309 (319)
Q Consensus 286 kg~~~~~~~~~~~~~~~~~~~~~~ 309 (319)
.-..|-++.+...-+.|+..||+-
T Consensus 100 DlR~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 100 DLRDPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp -TTS---TTTSS-BSEEEE---SS
T ss_pred cccccCCHHHhcCCCEEEeCCCCC
Confidence 234455678888888999999985
No 258
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=28.60 E-value=2e+02 Score=28.07 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=40.2
Q ss_pred HHHHHHcCCcEEEEecCCHHH-H---HHHHHHhCCcEE------EccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhH
Q 020934 175 WAELQRRGFKGLYEYDNDASK-A---RKLEGKIGIKVI------RHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDI 244 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~-v---~~l~~~lGI~~I------~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDI 244 (319)
+...-+.|.++.++||-..+. + ..-++.+|++.+ ....+|+...=++++++ .-+=++.|||++. |.
T Consensus 131 l~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~k~Ke~R~~~v~k---~~~iVm~vGDNl~-DF 206 (274)
T COG2503 131 LNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDKKSKEVRRQAVEK---DYKIVMLVGDNLD-DF 206 (274)
T ss_pred HHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCCCcHHHHHHHHhh---ccceeeEecCchh-hh
Confidence 477788999999999876443 2 233367788732 23455555432233333 2255788999983 53
No 259
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=28.14 E-value=3.6e+02 Score=24.15 Aligned_cols=67 Identities=15% Similarity=0.320 Sum_probs=35.0
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChH--HHHHHHHHhCCCCCceEE--EcCCch
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAG--TAEEIEKHFGCQSSQLIM--VGDRPF 241 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~--~f~~ALk~lgv~p~e~vm--VGDrl~ 241 (319)
.++.|++.|+.-+++..+ ...+...+..+|+.++......+.. .+..++..++....+.++ -||+++
T Consensus 33 ~l~~l~~~~i~~ivvv~~-~~~i~~~~~~~~~~v~~~~~~~~~gt~~~~~~~~~~~~~~~~~vlv~~~D~Pl 103 (245)
T PRK05450 33 VYERASKAGADRVVVATD-DERIADAVEAFGGEVVMTSPDHPSGTDRIAEAAAKLGLADDDIVVNVQGDEPL 103 (245)
T ss_pred HHHHHHhcCCCeEEEECC-cHHHHHHHHHcCCEEEECCCcCCCchHHHHHHHHhcCCCCCCEEEEecCCCCC
Confidence 468888878765544323 3445555556787765421222222 244455555433345444 499954
No 260
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=27.52 E-value=1.2e+02 Score=28.49 Aligned_cols=59 Identities=15% Similarity=-0.010 Sum_probs=39.1
Q ss_pred eeeeeeccCCcccC----cc-ccCCcchhhHHHHHH-cCCcEEEEecCCHHHHHHHHHHhCCcEE
Q 020934 150 STVVFAKDRHLALP----HV-TVPDIRYIDWAELQR-RGFKGLYEYDNDASKARKLEGKIGIKVI 208 (319)
Q Consensus 150 ~a~vL~rd~~l~~P----~~-~v~~i~~i~l~~Lke-~Gikl~I~SNn~~~~v~~l~~~lGI~~I 208 (319)
...+++.|.+|+-. +. .+.......++.|++ .|+.++|+|......+..+++.+++.++
T Consensus 15 ~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~~~i 79 (266)
T PRK10187 15 YAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLA 79 (266)
T ss_pred EEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccceEE
Confidence 34556788888642 23 222222224788887 7999999998888888877776666543
No 261
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.48 E-value=1.1e+02 Score=26.89 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=47.0
Q ss_pred HHHHHHcCCcEEEEecCC-HHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCe
Q 020934 175 WAELQRRGFKGLYEYDND-ASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFL 253 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~-~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~ 253 (319)
+..++..|-+++++.-.+ ...+..+.+-+|+.+......-+. .+..+++++.- ..--++||+..- ...|++.|+.
T Consensus 70 l~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~~~-e~~~~i~~~~~-~G~~viVGg~~~--~~~A~~~gl~ 145 (176)
T PF06506_consen 70 LAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYDSEE-EIEAAIKQAKA-EGVDVIVGGGVV--CRLARKLGLP 145 (176)
T ss_dssp HHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEESSHH-HHHHHHHHHHH-TT--EEEESHHH--HHHHHHTTSE
T ss_pred HHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEECCHH-HHHHHHHHHHH-cCCcEEECCHHH--HHHHHHcCCc
Confidence 455555666777654333 334677777788875422222222 35555554421 123689999974 6778999999
Q ss_pred EEEEcc
Q 020934 254 TILTEP 259 (319)
Q Consensus 254 TILV~P 259 (319)
++++.+
T Consensus 146 ~v~i~s 151 (176)
T PF06506_consen 146 GVLIES 151 (176)
T ss_dssp EEESS-
T ss_pred EEEEEe
Confidence 999965
No 262
>PTZ00174 phosphomannomutase; Provisional
Probab=27.47 E-value=1.1e+02 Score=28.12 Aligned_cols=49 Identities=24% Similarity=0.252 Sum_probs=36.2
Q ss_pred eeeccCCcccCccccCCcchhhHHHHHHcCCcEEEEecCCHHHHHHHHH
Q 020934 153 VFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGLYEYDNDASKARKLEG 201 (319)
Q Consensus 153 vL~rd~~l~~P~~~v~~i~~i~l~~Lke~Gikl~I~SNn~~~~v~~l~~ 201 (319)
.++-|.+|+-.+..+.....-.+..|+++|++++++|......+...++
T Consensus 9 a~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 9 LFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred EEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 3477888887776665444445899999999999999877666665544
No 263
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=26.66 E-value=1.4e+02 Score=25.50 Aligned_cols=48 Identities=29% Similarity=0.169 Sum_probs=34.4
Q ss_pred hHHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHh
Q 020934 174 DWAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHF 226 (319)
Q Consensus 174 ~l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~l 226 (319)
..+.|++.|+.+++++ +.++.+-..++..||.++.... ...+++++.+
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~----~~V~e~i~~~ 104 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPG----GTVEEAIKAF 104 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCC----CCHHHHHHHH
Confidence 3689999999988886 6667777777999999874211 2255666654
No 264
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=26.07 E-value=1.6e+02 Score=24.80 Aligned_cols=97 Identities=12% Similarity=0.010 Sum_probs=49.7
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCc-----EE-EccCCCChHH-HHHHHHHhCCCCCceEEEcCCchhhHHhH
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIK-----VI-RHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDRPFTDIVYG 247 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~-----~I-~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDrl~TDIlgA 247 (319)
|+.|.+. |.++|.|......++.+.+.++-. .+ .........+ ..+-|..+|-+.+++|+|-|+.. ....
T Consensus 45 L~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~--~~~~ 121 (159)
T PF03031_consen 45 LEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPR--KWAL 121 (159)
T ss_dssp HHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GG--GGTT
T ss_pred HHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhccccccccccccccccccccccchHHHhhccccEEEEeCCHH--Heec
Confidence 6777544 999999988888888888888741 11 1111111111 12456666778899999999973 3333
Q ss_pred HHcCCeEEEEccCcCC--CchhHHHHHHHHH
Q 020934 248 NRNGFLTILTEPLSLA--EEPFIVRQVRKLE 276 (319)
Q Consensus 248 n~aGm~TILV~Pi~~~--~e~~~trl~R~lE 276 (319)
+ .-..|.|.++... ++....++..++|
T Consensus 122 ~--~~N~i~v~~f~~~~~~D~~L~~l~~~L~ 150 (159)
T PF03031_consen 122 Q--PDNGIPVPPFFGDTPNDRELLRLLPFLE 150 (159)
T ss_dssp S--GGGEEE----SSCHTT--HHHHHHHHHH
T ss_pred c--CCceEEeccccCCCcchhHHHHHHHHHH
Confidence 2 2336788777654 2333334444443
No 265
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=26.04 E-value=5.4e+02 Score=23.90 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=18.3
Q ss_pred cccCCCCCceeEehhHHHHH--HHHHHcccc
Q 020934 114 PRYNKDKYWTVLCTNMWWSQ--LKAALGQRI 142 (319)
Q Consensus 114 ~~~~~~g~~~liiG~~WW~~--l~~~lg~~~ 142 (319)
.+....|.+.+++|..-+.+ +..++...|
T Consensus 90 ~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 90 DKLLRAGADKVSINTAAVKNPELIYELADRF 120 (254)
T ss_pred HHHHHcCCCEEEEChhHhhChHHHHHHHHHc
Confidence 44455688888888877664 344444444
No 266
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=25.95 E-value=2e+02 Score=30.00 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=41.4
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEE--EcCCch
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIM--VGDRPF 241 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vm--VGDrl~ 241 (319)
-+.|+++|+.+.++ |++.++++.+. +.|..++...+..| +++++.|++..+.++ ++|...
T Consensus 433 a~~L~~~g~~vvvI-d~d~~~~~~~~-~~g~~~i~GD~~~~-----~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 433 GEKLLAAGIPLVVI-ETSRTRVDELR-ERGIRAVLGNAANE-----EIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred HHHHHHCCCCEEEE-ECCHHHHHHHH-HCCCeEEEcCCCCH-----HHHHhcCccccCEEEEEcCChHH
Confidence 48899999987655 67778887774 57888876544443 567777887666444 367643
No 267
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.72 E-value=76 Score=30.75 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=19.3
Q ss_pred HHHHHhCCCCCceEEEcCCchhhHHhHHHc
Q 020934 221 EIEKHFGCQSSQLIMVGDRPFTDIVYGNRN 250 (319)
Q Consensus 221 ~ALk~lgv~p~e~vmVGDrl~TDIlgAn~a 250 (319)
+.+-.+...+..+++|||++ ||+.+=..+
T Consensus 197 e~~~ele~~d~sa~~VGDSI-tDv~ml~~~ 225 (315)
T COG4030 197 EGYCELEGIDFSAVVVGDSI-TDVKMLEAA 225 (315)
T ss_pred HHHHhhcCCCcceeEecCcc-cchHHHHHh
Confidence 33334444445599999999 899875544
No 268
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.72 E-value=3.1e+02 Score=23.99 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=35.2
Q ss_pred CCcchhhHHHHHHcCCcEEEEecCCH--------HHHHHHHHHhCCcEEE--ccCCCChH---H-HHHHHHHhC
Q 020934 168 PDIRYIDWAELQRRGFKGLYEYDNDA--------SKARKLEGKIGIKVIR--HRVKKPAG---T-AEEIEKHFG 227 (319)
Q Consensus 168 ~~i~~i~l~~Lke~Gikl~I~SNn~~--------~~v~~l~~~lGI~~I~--~~akKP~~---~-f~~ALk~lg 227 (319)
+.+..-|+..+++.||+.+|.--.++ ..++..+++.|+.+.. +...-+.. . |..|+...+
T Consensus 14 gQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eae 87 (130)
T COG3453 14 GQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAE 87 (130)
T ss_pred CCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhC
Confidence 34445588999999999887421121 2345666888987532 22222222 2 666777664
No 269
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=25.49 E-value=5.6e+02 Score=23.95 Aligned_cols=17 Identities=6% Similarity=-0.343 Sum_probs=9.7
Q ss_pred cCCCCCceeEehhHHHH
Q 020934 116 YNKDKYWTVLCTNMWWS 132 (319)
Q Consensus 116 ~~~~g~~~liiG~~WW~ 132 (319)
....|.+.+++|..-+.
T Consensus 92 l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 92 IFSLGVEKVSINTAALE 108 (258)
T ss_pred HHHCCCCEEEEChHHhc
Confidence 33457766677765443
No 270
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=25.47 E-value=50 Score=33.79 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=24.9
Q ss_pred HHHHHHHh----CCCCCceEEEcCCchhhHHhHH----HcCCeEEEEc
Q 020934 219 AEEIEKHF----GCQSSQLIMVGDRPFTDIVYGN----RNGFLTILTE 258 (319)
Q Consensus 219 f~~ALk~l----gv~p~e~vmVGDrl~TDIlgAn----~aGm~TILV~ 258 (319)
.....+.+ +++++|+++||||+. -.||| |.-..|+||.
T Consensus 354 V~~lQ~y~~~~~~i~~~~tLHVGDQF~--s~GaNDfkaR~a~~t~WIa 399 (408)
T PF06437_consen 354 VRALQKYFDPEGGIKPSETLHVGDQFL--SAGANDFKARLACTTAWIA 399 (408)
T ss_pred HHHHHHHHHhccCCCccceeeehhhhh--ccCCcchhhhhhceeeEec
Confidence 33344556 899999999999984 33433 2234588884
No 271
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=24.88 E-value=4.5e+02 Score=24.31 Aligned_cols=30 Identities=7% Similarity=-0.293 Sum_probs=19.3
Q ss_pred ccccCCCCCceeEehhHHHHH--HHHHHcccc
Q 020934 113 EPRYNKDKYWTVLCTNMWWSQ--LKAALGQRI 142 (319)
Q Consensus 113 ~~~~~~~g~~~liiG~~WW~~--l~~~lg~~~ 142 (319)
+.+....|++.+++|...+.+ ++.++...|
T Consensus 90 v~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~ 121 (241)
T PRK14024 90 LEAALATGCARVNIGTAALENPEWCARVIAEH 121 (241)
T ss_pred HHHHHHCCCCEEEECchHhCCHHHHHHHHHHh
Confidence 566677888888888876654 344444444
No 272
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=24.79 E-value=4.9e+02 Score=24.08 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=52.9
Q ss_pred HHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhC--CCCC-ceEEEcCC-chhhHHhHHHcC
Q 020934 176 AELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFG--CQSS-QLIMVGDR-PFTDIVYGNRNG 251 (319)
Q Consensus 176 ~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lg--v~p~-e~vmVGDr-l~TDIlgAn~aG 251 (319)
..|.+.||.+..+++. ..+....+.. .+.+.-...=|...-...++++. .... -++|+.++ -..|.+.|-.+|
T Consensus 18 ~~L~~~g~~v~~~~~~--~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~G 94 (229)
T COG0745 18 EYLEEEGYEVDVAADG--EEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAG 94 (229)
T ss_pred HHHHHCCCEEEEECCH--HHHHHHHhcC-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCc
Confidence 8899999998877543 4443333433 44433344456432122233322 1122 26888776 446999999999
Q ss_pred CeEEEEccCcCC
Q 020934 252 FLTILTEPLSLA 263 (319)
Q Consensus 252 m~TILV~Pi~~~ 263 (319)
.+-.+++|++..
T Consensus 95 ADDYl~KPf~~~ 106 (229)
T COG0745 95 ADDYLTKPFSPR 106 (229)
T ss_pred CCeeeeCCCCHH
Confidence 999999999854
No 273
>PRK06381 threonine synthase; Validated
Probab=24.48 E-value=3.1e+02 Score=26.23 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=37.6
Q ss_pred HHHHHHcCCcEEEEe--cCCHHHHHHHHHHhCCcEEEccCCCChHHHHHHHHHhCCCCCceEEEcCCch
Q 020934 175 WAELQRRGFKGLYEY--DNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVGDRPF 241 (319)
Q Consensus 175 l~~Lke~Gikl~I~S--Nn~~~~v~~l~~~lGI~~I~~~akKP~~~f~~ALk~lgv~p~e~vmVGDrl~ 241 (319)
+..+++.|.+.++.. .|.+.-+......+|++.+..-.......-.+.++.+|. +++.+++.+.
T Consensus 55 l~~a~~~g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA---~V~~~~~~~~ 120 (319)
T PRK06381 55 VRRAMRLGYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGA---EIIYVDGKYE 120 (319)
T ss_pred HHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCC---EEEEcCCCHH
Confidence 567788888766533 233444556667789885432111222223456778885 7888887653
No 274
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=24.37 E-value=5.7e+02 Score=26.43 Aligned_cols=85 Identities=14% Similarity=0.211 Sum_probs=52.4
Q ss_pred HHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEcc---CCCChHH---HHHHHHHhC-----CCCCceEEEcCC-----
Q 020934 176 AELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHR---VKKPAGT---AEEIEKHFG-----CQSSQLIMVGDR----- 239 (319)
Q Consensus 176 ~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~---akKP~~~---f~~ALk~lg-----v~p~e~vmVGDr----- 239 (319)
.-|..- ..++++-......+..+.+..++++|... ..-|--. +.-+.+++| ++--.+++|||-
T Consensus 177 rvLs~y-~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv 255 (429)
T PRK11891 177 RVMSGY-VDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRT 255 (429)
T ss_pred HHHHHh-CCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChH
Confidence 334333 44555544555667788888899999643 2234322 333445664 555699999995
Q ss_pred chhhHHhHHH-cCCeEEEEccCc
Q 020934 240 PFTDIVYGNR-NGFLTILTEPLS 261 (319)
Q Consensus 240 l~TDIlgAn~-aGm~TILV~Pi~ 261 (319)
...-+.++.+ .|+...++.|-.
T Consensus 256 ~~Sl~~~la~~~G~~v~l~~P~~ 278 (429)
T PRK11891 256 VHSLVKLLALYRGLKFTLVSPPT 278 (429)
T ss_pred HHHHHHHHHHhcCCEEEEECCCc
Confidence 3334555444 499999998754
No 275
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=24.33 E-value=4e+02 Score=26.00 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=35.6
Q ss_pred HHHHHHHhCCCCCceEEEcCCchhhHHhHHHcCCeEEEEccC
Q 020934 219 AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNRNGFLTILTEPL 260 (319)
Q Consensus 219 f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~aGm~TILV~Pi 260 (319)
|+.+.+++|-+.-.-++|||.. +--.+|+.+++..+-|...
T Consensus 219 Fe~I~~Rfg~p~~~f~~IGDG~-eEe~aAk~l~wPFw~I~~h 259 (274)
T TIGR01658 219 FKWIKERFGHPKVRFCAIGDGW-EECTAAQAMNWPFVKIDLH 259 (274)
T ss_pred HHHHHHHhCCCCceEEEeCCCh-hHHHHHHhcCCCeEEeecC
Confidence 8999999998778899999998 5779999999998877543
No 276
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=24.22 E-value=4.5e+02 Score=22.42 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=51.2
Q ss_pred HHHHHcCCcEEE-EecCCHHHHHHHHHHhCCcEEEccC--CCChHH---HHHHHHHhCCCCCceEEEcCCch-------h
Q 020934 176 AELQRRGFKGLY-EYDNDASKARKLEGKIGIKVIRHRV--KKPAGT---AEEIEKHFGCQSSQLIMVGDRPF-------T 242 (319)
Q Consensus 176 ~~Lke~Gikl~I-~SNn~~~~v~~l~~~lGI~~I~~~a--kKP~~~---f~~ALk~lgv~p~e~vmVGDrl~-------T 242 (319)
..|+.+||+++. -.+...+++.....+.+..+|..+. ..-... +.+.|+..+.+ +-.++||=.+. -
T Consensus 25 ~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~-~~~i~vGG~~~~~~~~~~~ 103 (137)
T PRK02261 25 RALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLG-DILLYVGGNLVVGKHDFEE 103 (137)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCC-CCeEEEECCCCCCccChHH
Confidence 688999999874 3345566666666777887653222 222222 33445555543 34577777762 2
Q ss_pred hHHhHHHcCCeEEEEcc
Q 020934 243 DIVYGNRNGFLTILTEP 259 (319)
Q Consensus 243 DIlgAn~aGm~TILV~P 259 (319)
|+.-++++|+..|+-.+
T Consensus 104 ~~~~l~~~G~~~vf~~~ 120 (137)
T PRK02261 104 VEKKFKEMGFDRVFPPG 120 (137)
T ss_pred HHHHHHHcCCCEEECcC
Confidence 55689999988887643
No 277
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=24.19 E-value=2.6e+02 Score=26.89 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=40.4
Q ss_pred hHHHHHHcCCcEEE-EecCC-HHHHHHHHH---HhCCcEEEccCCCChHH---HHHHHHHhCCCCCceEEEcCCchh
Q 020934 174 DWAELQRRGFKGLY-EYDND-ASKARKLEG---KIGIKVIRHRVKKPAGT---AEEIEKHFGCQSSQLIMVGDRPFT 242 (319)
Q Consensus 174 ~l~~Lke~Gikl~I-~SNn~-~~~v~~l~~---~lGI~~I~~~akKP~~~---f~~ALk~lgv~p~e~vmVGDrl~T 242 (319)
.++.|...|++-++ +++.. ....+..+. .+|+.+.+....+|... +..+.+.++- .+-+++.||.+++
T Consensus 40 ~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i~~-~~~~lv~gD~i~~ 115 (292)
T PRK15480 40 PLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGG-DDCALVLGDNIFY 115 (292)
T ss_pred HHHHHHHCCCCEEEEEecCCchHHHHHHHcCccccCceeEEEECCCCCCHHHHHHHHHHHhCC-CCEEEEECCeeee
Confidence 46999999998764 54433 344444432 35555322234566642 5556666653 2468888998874
No 278
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=23.87 E-value=7.4e+02 Score=24.80 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=60.5
Q ss_pred HHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEE-----ccCCCC--hHH-HHHHHHHhCCCCCceEEEcCCchh--hHH
Q 020934 176 AELQRRGFKGLYEYDNDASKARKLEGKIGIKVIR-----HRVKKP--AGT-AEEIEKHFGCQSSQLIMVGDRPFT--DIV 245 (319)
Q Consensus 176 ~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~-----~~akKP--~~~-f~~ALk~lgv~p~e~vmVGDrl~T--DIl 245 (319)
+.|-+.|+.+++..+++...++++ ..+|...|. -+...+ .|. ++...+. +.=.|+||=-+-+ |+.
T Consensus 191 ~~L~~~Gf~v~~yc~~d~~~a~~l-~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~----~~vpVivdAGIg~~sda~ 265 (326)
T PRK11840 191 EILVKEGFQVMVYCSDDPIAAKRL-EDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEG----ATVPVLVDAGVGTASDAA 265 (326)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHH-HhcCCEEEeeccccccCCCCCCCHHHHHHHHHc----CCCcEEEeCCCCCHHHHH
Confidence 444444999977777887888777 455764331 012222 344 4455555 3446777766544 999
Q ss_pred hHHHcCCeEEEEc-cCcCCCchhHHHHHHHHHHHH
Q 020934 246 YGNRNGFLTILTE-PLSLAEEPFIVRQVRKLEVTI 279 (319)
Q Consensus 246 gAn~aGm~TILV~-Pi~~~~e~~~trl~R~lEr~i 279 (319)
.|-.+|.+.+|++ .+...++.. .+-|.|-..+
T Consensus 266 ~AmelGadgVL~nSaIa~a~dPv--~Ma~A~~~av 298 (326)
T PRK11840 266 VAMELGCDGVLMNTAIAEAKNPV--LMARAMKLAV 298 (326)
T ss_pred HHHHcCCCEEEEcceeccCCCHH--HHHHHHHHHH
Confidence 9999999999995 777665543 3444444433
No 279
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=23.76 E-value=3e+02 Score=27.05 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHcCCcE------------EEEecCC-HHHHHHHHHHhCCcEEEccCCCChHH-HHHHHHHhCCCCCceEEEcCC
Q 020934 175 WAELQRRGFKG------------LYEYDND-ASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQSSQLIMVGDR 239 (319)
Q Consensus 175 l~~Lke~Gikl------------~I~SNn~-~~~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk~lgv~p~e~vmVGDr 239 (319)
.+.|+++|++. +|+.... ...+...++..|+.++ .+.=|.-. .++..+++.-+--++++|||.
T Consensus 46 v~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~vi--DaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~ 122 (298)
T PRK01045 46 VERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAKERGLTVI--DATCPLVTKVHKEVARMSREGYEIILIGHK 122 (298)
T ss_pred HHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEE--eCCCccchHHHHHHHHHHhCCCEEEEEeCC
No 280
>PLN02527 aspartate carbamoyltransferase
Probab=23.06 E-value=7.1e+02 Score=24.25 Aligned_cols=86 Identities=13% Similarity=0.056 Sum_probs=53.7
Q ss_pred HHHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEEEccCC-CChH--H---HHHHHHHhC-CCCCceEEEcCC-----chh
Q 020934 175 WAELQRRGFKGLYEYDNDASKARKLEGKIGIKVIRHRVK-KPAG--T---AEEIEKHFG-CQSSQLIMVGDR-----PFT 242 (319)
Q Consensus 175 l~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I~~~ak-KP~~--~---f~~ALk~lg-v~p~e~vmVGDr-----l~T 242 (319)
...|..- ..++++-......+..+.+...+++|..... .=+| . +.-+.+++| ++--.+++|||- ...
T Consensus 90 a~vls~y-~D~iviR~~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~kva~vGD~~~~rv~~S 168 (306)
T PLN02527 90 IRTVEGY-SDIIVLRHFESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGDLANGRTVRS 168 (306)
T ss_pred HHHHHHh-CcEEEEECCChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCCCChhHHH
Confidence 3445444 5566665555666778888889998864332 2334 2 233445566 555689999993 334
Q ss_pred hHHhHHHc-CCeEEEEccCc
Q 020934 243 DIVYGNRN-GFLTILTEPLS 261 (319)
Q Consensus 243 DIlgAn~a-Gm~TILV~Pi~ 261 (319)
.+.++... |+...++.|-.
T Consensus 169 l~~~~~~~~g~~v~~~~P~~ 188 (306)
T PLN02527 169 LAYLLAKYEDVKIYFVAPDV 188 (306)
T ss_pred HHHHHHhcCCCEEEEECCCc
Confidence 56665655 89888887744
No 281
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=23.00 E-value=5.8e+02 Score=25.55 Aligned_cols=95 Identities=13% Similarity=0.006 Sum_probs=49.0
Q ss_pred cCCcEEEEecCCHH--HHHHHHHHhCCcEEEccC-CCChHHHHHHHHHhCCCCCceEEEcCCchh-----------hHH-
Q 020934 181 RGFKGLYEYDNDAS--KARKLEGKIGIKVIRHRV-KKPAGTAEEIEKHFGCQSSQLIMVGDRPFT-----------DIV- 245 (319)
Q Consensus 181 ~Gikl~I~SNn~~~--~v~~l~~~lGI~~I~~~a-kKP~~~f~~ALk~lgv~p~e~vmVGDrl~T-----------DIl- 245 (319)
.|.+++|..+.... .++-+.+.+|+.++.... ..+...+.+.++.+. ...++|||.-.- |++
T Consensus 287 ~Gk~vai~~~~~~~~~la~~l~~elG~~v~~i~~~~~~~~~~~~~~~~~~---~~~~~v~d~~~~e~~~~~~~~~pdlii 363 (415)
T cd01977 287 KGKKVCIWTGGPKLWHWTKVIEDELGMQVVAMSSKFGHQEDFEKVIARGG---EGTIYIDDPNELEFFEILEMLKPDIIL 363 (415)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHhcC---CceEEEeCCCHHHHHHHHHhcCCCEEE
Confidence 47777776655432 233333579998653211 122333666666654 467788773211 222
Q ss_pred -------hHHHcCCeEEEEccCcCCCchhHHHHHHHHHHH
Q 020934 246 -------YGNRNGFLTILTEPLSLAEEPFIVRQVRKLEVT 278 (319)
Q Consensus 246 -------gAn~aGm~TILV~Pi~~~~e~~~trl~R~lEr~ 278 (319)
.|.+.|+..+-+.+.....-.-+.-..+++|..
T Consensus 364 g~s~~~~~a~~lgip~~~~~~~~~~~~~Gy~G~~~l~~~i 403 (415)
T cd01977 364 TGPRVGELVKKLHVPYVNIHAYHNGPYMGFEGFVNLARDM 403 (415)
T ss_pred ecCccchhhhhcCCCEEeccCCcCCCccchhhHHHHHHHH
Confidence 455567766655444333233355556666653
No 282
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=22.80 E-value=5.3e+02 Score=23.17 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=51.9
Q ss_pred HHHHHcCCcEE-EEecCCHHHHHHHHHHhCCcEEE--ccCCCChHH---HHHHHHHhCCCCCceEEEcCCchhhHHhHHH
Q 020934 176 AELQRRGFKGL-YEYDNDASKARKLEGKIGIKVIR--HRVKKPAGT---AEEIEKHFGCQSSQLIMVGDRPFTDIVYGNR 249 (319)
Q Consensus 176 ~~Lke~Gikl~-I~SNn~~~~v~~l~~~lGI~~I~--~~akKP~~~---f~~ALk~lgv~p~e~vmVGDrl~TDIlgAn~ 249 (319)
..|+..||+++ +-.|-..+++....++.+.++|. .......+. ..+.+++.|..++=.++||=+.++.- .|..
T Consensus 106 ~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~~~-~~~~ 184 (197)
T TIGR02370 106 TMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVTQD-WADK 184 (197)
T ss_pred HHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcCHH-HHHH
Confidence 78899999987 44445556666666777777653 222222232 44566666666666788998888764 5778
Q ss_pred cCCeEEE
Q 020934 250 NGFLTIL 256 (319)
Q Consensus 250 aGm~TIL 256 (319)
.|.+..-
T Consensus 185 ~gad~~~ 191 (197)
T TIGR02370 185 IGADVYG 191 (197)
T ss_pred hCCcEEe
Confidence 8887654
No 283
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=22.29 E-value=3.9e+02 Score=25.76 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=44.4
Q ss_pred HHHHHHcCC-cEEEEecCCHHHHHHHHHHhCCcEEEccCCCChHH--HHHHHHHhCCCCCceEE--EcCCch
Q 020934 175 WAELQRRGF-KGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT--AEEIEKHFGCQSSQLIM--VGDRPF 241 (319)
Q Consensus 175 l~~Lke~Gi-kl~I~SNn~~~~v~~l~~~lGI~~I~~~akKP~~~--f~~ALk~lgv~p~e~vm--VGDrl~ 241 (319)
++...+.|. +++|++ +..++....+.+|..++..+..-+.+. +.+++++++.+..++|+ =||.++
T Consensus 35 ~e~a~~s~~~rvvVAT--Dde~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~ 104 (247)
T COG1212 35 AERALKSGADRVVVAT--DDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPF 104 (247)
T ss_pred HHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCEEEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCC
Confidence 366666665 445664 456777777888998876556666663 77899999887666553 388765
No 284
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=21.92 E-value=2.4e+02 Score=29.91 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=13.5
Q ss_pred HHHHHcCCcEEEEecCCHHHHHHHHHHhCCcEE
Q 020934 176 AELQRRGFKGLYEYDNDASKARKLEGKIGIKVI 208 (319)
Q Consensus 176 ~~Lke~Gikl~I~SNn~~~~v~~l~~~lGI~~I 208 (319)
+.|++.|+++.++ |++.++++.+ ++.|.+++
T Consensus 417 ~~L~~~g~~vvvI-D~d~~~v~~~-~~~g~~v~ 447 (601)
T PRK03659 417 RLLMANKMRITVL-ERDISAVNLM-RKYGYKVY 447 (601)
T ss_pred HHHHhCCCCEEEE-ECCHHHHHHH-HhCCCeEE
Confidence 4455555554333 3444444433 23344433
No 285
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=21.91 E-value=3.6e+02 Score=24.83 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=7.4
Q ss_pred HHHHHHcCCcEEE
Q 020934 175 WAELQRRGFKGLY 187 (319)
Q Consensus 175 l~~Lke~Gikl~I 187 (319)
++..++.|++...
T Consensus 42 ~~~A~~~gIp~~~ 54 (207)
T PLN02331 42 AEYARENGIPVLV 54 (207)
T ss_pred HHHHHHhCCCEEE
Confidence 4555566666554
No 286
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=21.27 E-value=2.6e+02 Score=25.64 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=35.5
Q ss_pred cEEEEecCCHH---HHHHHHHHhCCcEEEccCCCChHH-HHHHHHHhCCCCCc--eEEEcCCc
Q 020934 184 KGLYEYDNDAS---KARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQSSQ--LIMVGDRP 240 (319)
Q Consensus 184 kl~I~SNn~~~---~v~~l~~~lGI~~I~~~akKP~~~-f~~ALk~lgv~p~e--~vmVGDrl 240 (319)
+++++||-+.. .++...+.+|...|+.+++-|.+- -.++.+...-.|.. .||+-|.=
T Consensus 1 kVIlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G 63 (180)
T PF14097_consen 1 KVILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKG 63 (180)
T ss_pred CEEEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 45778776532 345566788999998888888763 34444444434444 46666654
No 287
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=21.25 E-value=4.4e+02 Score=27.97 Aligned_cols=112 Identities=9% Similarity=0.005 Sum_probs=64.0
Q ss_pred ccccCCCCCceeEehhHHHH--------------HHHHHHccccccccceeeeeeeeccC---C----------------
Q 020934 113 EPRYNKDKYWTVLCTNMWWS--------------QLKAALGQRINVEGIVSSTVVFAKDR---H---------------- 159 (319)
Q Consensus 113 ~~~~~~~g~~~liiG~~WW~--------------~l~~~lg~~~n~~gI~~~a~vL~rd~---~---------------- 159 (319)
+.+....|++.+++|..-.. +++..+...|+...|..... .++. .
T Consensus 340 ~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD--~k~~~~~~~~~~~~~~~~~~~~~~ 417 (538)
T PLN02617 340 ASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSID--PRRVYVKDPSDVPFKTVKVTNPGP 417 (538)
T ss_pred HHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEe--cCcCcccCccccccccccccccCc
Confidence 57778899999999997776 56666666764432222111 0110 0
Q ss_pred ---------ccc-CccccCCcchhhH-HHHHHcCCcEEEEecCC---------HHHHHHHHHHhCCcEEE-ccCCCChHH
Q 020934 160 ---------LAL-PHVTVPDIRYIDW-AELQRRGFKGLYEYDND---------ASKARKLEGKIGIKVIR-HRVKKPAGT 218 (319)
Q Consensus 160 ---------l~~-P~~~v~~i~~i~l-~~Lke~Gikl~I~SNn~---------~~~v~~l~~~lGI~~I~-~~akKP~~~ 218 (319)
... -+....++..++| +++.+.|..-++.++-+ .+.++.+.+..++++|. .++..|.-
T Consensus 418 ~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d- 496 (538)
T PLN02617 418 NGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTPEH- 496 (538)
T ss_pred CcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCHHH-
Confidence 000 0111123444555 78888998877776543 23456677778999884 45666532
Q ss_pred HHHHHHHhC
Q 020934 219 AEEIEKHFG 227 (319)
Q Consensus 219 f~~ALk~lg 227 (319)
|.++++.-+
T Consensus 497 ~~~~~~~~~ 505 (538)
T PLN02617 497 FSDVFSKTN 505 (538)
T ss_pred HHHHHhcCC
Confidence 555554433
No 288
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=21.17 E-value=2.5e+02 Score=29.93 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=10.6
Q ss_pred HHHHHcCCcEEEEecCCHHHHHHH
Q 020934 176 AELQRRGFKGLYEYDNDASKARKL 199 (319)
Q Consensus 176 ~~Lke~Gikl~I~SNn~~~~v~~l 199 (319)
+.|++.|+++.++ |++.++++.+
T Consensus 417 ~~L~~~g~~vvvI-D~d~~~v~~~ 439 (621)
T PRK03562 417 RLLLSSGVKMTVL-DHDPDHIETL 439 (621)
T ss_pred HHHHhCCCCEEEE-ECCHHHHHHH
Confidence 4455555554433 4444444433
No 289
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=20.69 E-value=8e+02 Score=25.10 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=29.4
Q ss_pred cCCcEEEEecCCHH--HHHHHHHHhCCcEEEccCCCChH-HHHHHHHHhCCCCCceEEEcCC
Q 020934 181 RGFKGLYEYDNDAS--KARKLEGKIGIKVIRHRVKKPAG-TAEEIEKHFGCQSSQLIMVGDR 239 (319)
Q Consensus 181 ~Gikl~I~SNn~~~--~v~~l~~~lGI~~I~~~akKP~~-~f~~ALk~lgv~p~e~vmVGDr 239 (319)
.|.+++|..+.... .++.+.+.+|+.++......... .+++.++.+ ++..++|+|.
T Consensus 324 ~GkrvaI~~~~~~~~~l~~~l~~ElGmevv~~~~~~~~~~~~~~~~~~~---~~~~~~i~d~ 382 (457)
T TIGR01284 324 RGKKVWVWSGGPKLWHWPRPLEDELGMEVVAVSTKFGHEDDYEKIIARV---REGTVIIDDP 382 (457)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEEEEeCCHHHHHHHHHhc---CCCeEEEeCC
Confidence 57777776655432 22334357999865432322223 255555553 2456677774
No 290
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=20.21 E-value=3.5e+02 Score=27.28 Aligned_cols=84 Identities=14% Similarity=0.123 Sum_probs=43.0
Q ss_pred hhHHHHHHc-CCcEEEEecCCHHHHHHHHHHhCCcEEE---ccCC----CChH-H-HHHHHHHhCCCCCceEEEcC-Cch
Q 020934 173 IDWAELQRR-GFKGLYEYDNDASKARKLEGKIGIKVIR---HRVK----KPAG-T-AEEIEKHFGCQSSQLIMVGD-RPF 241 (319)
Q Consensus 173 i~l~~Lke~-Gikl~I~SNn~~~~v~~l~~~lGI~~I~---~~ak----KP~~-~-f~~ALk~lgv~p~e~vmVGD-rl~ 241 (319)
.++++|++. +.++++= .-...+....+...|++.|. |+.+ -|.. . +.++.+..+- .-++++=|+ +--
T Consensus 218 ~~i~~l~~~~~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~-~i~vi~dGGIr~g 295 (367)
T TIGR02708 218 RDIEEIAGYSGLPVYVK-GPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDK-RVPIVFDSGVRRG 295 (367)
T ss_pred HHHHHHHHhcCCCEEEe-CCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCC-CCcEEeeCCcCCH
Confidence 345666554 4554431 11222333444567888542 2221 2222 2 3344343331 123444444 234
Q ss_pred hhHHhHHHcCCeEEEEc
Q 020934 242 TDIVYGNRNGFLTILTE 258 (319)
Q Consensus 242 TDIlgAn~aGm~TILV~ 258 (319)
+||.-|..+|.+.++|-
T Consensus 296 ~Dv~KaLalGAd~V~ig 312 (367)
T TIGR02708 296 QHVFKALASGADLVALG 312 (367)
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 69999999999999993
Done!