BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020937
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 157 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRL 216
E DG I+ V V +RP + EFL+++ + + VLFTA L YA P+ D +DR +F RL
Sbjct: 57 EIDGT--IHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARL 114
Query: 217 YRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 262
+R S V +VKDLS L ++L +V++VDN+P S++ P N +P
Sbjct: 115 FRESCV-FHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVP 159
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 157 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRL 216
E DG ++ V V +RP + EFL+++ E + VLFTA L YA P+ D +D+ F RL
Sbjct: 44 EIDGV--VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARL 101
Query: 217 YRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 262
+R S V +VKDLS L +DL RV+++DN+P S++ P N +P
Sbjct: 102 FRESCV-FHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 146
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 157 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRL 216
E DG ++ V V +RP + EFL+++ E + VLFTA L YA P+ D +D+ F RL
Sbjct: 47 EIDGV--VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARL 104
Query: 217 YRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 262
+R S V +VKDLS L +DL RV+++DN+P S++ P N +P
Sbjct: 105 FRESCV-FHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 149
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 157 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRL 216
E DG ++ V V +RP + EFL+++ E + VLFTA L YA P+ D +D+ F RL
Sbjct: 44 EIDGV--VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARL 101
Query: 217 YRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 262
+R S V +VKDLS L +DL RV+++DN+P S++ P N +P
Sbjct: 102 FRESCV-FHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 146
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 157 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRL 216
E DG ++ V V +RP + EFL+++ E + VLFTA L YA P+ D +D+ F RL
Sbjct: 43 EIDGV--VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARL 100
Query: 217 YRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 262
+R S V +VKDLS L +DL RV+++DN+P S++ P N +P
Sbjct: 101 FRESCV-FHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 145
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 157 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRL 216
E DG ++ V V +RP + EFL++ E + VLFTA L YA P+ D +D+ F RL
Sbjct: 44 EIDGV--VHQVYVLKRPHVDEFLQRXGELFECVLFTASLAKYADPVADXLDKWGAFRARL 101
Query: 217 YRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 262
+R S V +VKDLS L +DL RV++ DN+P S++ P N +P
Sbjct: 102 FRESCV-FHRGNYVKDLSRLGRDLRRVLIXDNSPASYVFHPDNAVP 146
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 167 VTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTVSTEY 226
V V +RP + EFL+++ E + VLFTA L YA P+ D +DR +F RL+R S V +
Sbjct: 54 VYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQ- 112
Query: 227 REHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 262
+VKDLS L +DL + +++DN+P S++ P N +P
Sbjct: 113 GCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVP 148
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 157 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRL 216
E DG ++ V V +RP + EFL+++ E + VLFTA L YA P+ D +D+ F RL
Sbjct: 47 EIDGV--VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARL 104
Query: 217 YRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 262
+R S V +VKDLS L +DL RV+++ N+P S++ P N +P
Sbjct: 105 FRESCV-FHRGNYVKDLSRLGRDLRRVLILANSPASYVFHPDNAVP 149
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 157 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRL 216
E DG ++ V V +RP + EFL+++ E + VLFTA L YA P+ D +D+ F RL
Sbjct: 47 EIDGV--VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARL 104
Query: 217 YRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 262
+R S V +VKDLS L +DL RV+++ N+P S++ P N +P
Sbjct: 105 FRESCV-FHRGNYVKDLSRLGRDLRRVLILANSPASYVFHPDNAVP 149
>pdb|3QLE|A Chain A, Structural Basis For The Function Of Tim50 In The
Mitochondrial Presequence Translocase
Length = 204
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 7/131 (5%)
Query: 171 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLF-SLRLYRPSTVSTEYRE- 228
+RPG FL L+++ ++VLF++ Y+ + +K+D + F S L++ V Y++
Sbjct: 60 KRPGADYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYNLFKEHCV---YKDG 116
Query: 229 -HVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIPCIPFSTGQPYDNQXXXXXXXXXXXX 287
H+KDLS L++DL +V+++D +P S+ LQP N IP P++ G+ D
Sbjct: 117 VHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWN-GEADDKLVRLIPFLEYLAT 175
Query: 288 XXQKDVRPVLH 298
KDVRP+L+
Sbjct: 176 QQTKDVRPILN 186
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 172 RPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID-RENLFSLR-LYRPSTVSTEYREH 229
RPGL +FL+K++E +L ++T G + YA+ + ID LF R L R + S +
Sbjct: 77 RPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSL 136
Query: 230 VKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIPCIPF 266
+ C D VV++D+ + P N I +P+
Sbjct: 137 RRLFPC---DTSMVVVIDDRGDVWDWNP-NLIKVVPY 169
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 172 RPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKID-RENLFSLR-LYRPSTVSTEYREH 229
RPGL +FL+K++E +L ++T G + YA+ + ID LF R L R + S +
Sbjct: 85 RPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSL 144
Query: 230 VKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIPCIPF 266
+ C D VV++D+ + P N I +P+
Sbjct: 145 RRLFPC---DTSMVVVIDDRGDVWDWNP-NLIKVVPY 177
>pdb|1RV9|A Chain A, Crystal Structure Of Neisseria Meningitidis Protein
Nmb0706, Pfam Duf152
Length = 259
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 135 IRTQAAEAGLKLFELECVSSDKECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAG 194
I A E G +F+ C P T FE G +FL L A L+L G
Sbjct: 168 ISADAFEVGQDVFDAFCT---------PMPEAATAFEGIGSGKFLADLYALARLILKREG 218
Query: 195 LEG-YARPLVDKIDRENLFSLR 215
+ G Y ++R+ FS R
Sbjct: 219 VGGVYGGTHCTVLERDTFFSYR 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,290,743
Number of Sequences: 62578
Number of extensions: 239407
Number of successful extensions: 411
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 13
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)