Query 020938
Match_columns 319
No_of_seqs 312 out of 1726
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 06:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02413 choline-phosphate cyt 100.0 1.1E-79 2.4E-84 580.2 30.3 276 5-280 12-293 (294)
2 KOG2804 Phosphorylcholine tran 100.0 1.9E-78 4.2E-83 573.0 23.7 249 14-269 57-308 (348)
3 cd02174 CCT CTP:phosphocholine 100.0 7.5E-42 1.6E-46 296.9 17.8 150 19-170 1-150 (150)
4 cd02173 ECT CTP:phosphoethanol 100.0 1.6E-39 3.5E-44 282.7 17.4 149 20-170 2-152 (152)
5 PLN02406 ethanolamine-phosphat 100.0 1.1E-39 2.3E-44 322.8 15.8 164 7-174 240-406 (418)
6 PTZ00308 ethanolamine-phosphat 100.0 8.9E-38 1.9E-42 303.9 16.5 163 7-173 181-345 (353)
7 KOG2803 Choline phosphate cyti 100.0 2.8E-38 6E-43 301.3 11.8 139 15-157 3-141 (358)
8 COG0615 TagD Cytidylyltransfer 100.0 8.4E-36 1.8E-40 257.5 12.3 132 20-157 1-139 (140)
9 PLN02406 ethanolamine-phosphat 100.0 4.1E-34 8.8E-39 283.2 16.0 141 14-158 47-191 (418)
10 PTZ00308 ethanolamine-phosphat 100.0 8.9E-33 1.9E-37 269.0 16.4 145 12-160 3-147 (353)
11 KOG2803 Choline phosphate cyti 100.0 2.2E-32 4.7E-37 261.1 11.4 164 7-177 187-352 (358)
12 cd02172 RfaE_N N-terminal doma 99.9 4.2E-26 9E-31 196.2 15.5 136 21-160 5-144 (144)
13 cd02170 cytidylyltransferase c 99.9 8.5E-26 1.8E-30 189.9 15.4 133 20-157 1-135 (136)
14 TIGR02199 rfaE_dom_II rfaE bif 99.9 8.1E-26 1.8E-30 194.2 14.3 131 20-157 11-144 (144)
15 TIGR01518 g3p_cytidyltrns glyc 99.9 2.2E-25 4.8E-30 186.0 12.9 123 23-155 1-125 (125)
16 COG2870 RfaE ADP-heptose synth 99.9 4.5E-25 9.7E-30 217.3 12.0 131 20-157 332-465 (467)
17 cd02171 G3P_Cytidylyltransfera 99.9 3.7E-24 8E-29 178.5 14.6 128 20-157 1-128 (129)
18 PRK11316 bifunctional heptose 99.9 4.1E-24 8.8E-29 211.1 14.4 131 20-156 340-472 (473)
19 PRK00777 phosphopantetheine ad 99.8 9.9E-20 2.2E-24 158.8 9.9 130 20-159 1-146 (153)
20 PRK00168 coaD phosphopantethei 99.7 4E-17 8.6E-22 142.3 14.0 128 20-158 1-138 (159)
21 TIGR01527 arch_NMN_Atrans nico 99.7 2.2E-16 4.9E-21 139.7 13.5 122 22-158 1-136 (165)
22 PF01467 CTP_transf_2: Cytidyl 99.7 3E-17 6.5E-22 135.5 7.3 126 24-154 1-157 (157)
23 PRK01170 phosphopantetheine ad 99.7 1.6E-16 3.5E-21 153.8 10.4 127 22-158 2-142 (322)
24 cd02039 cytidylyltransferase_l 99.7 2.6E-16 5.6E-21 129.6 9.8 128 22-154 1-143 (143)
25 cd02163 PPAT Phosphopantethein 99.6 2.7E-15 5.8E-20 130.1 11.8 126 22-158 1-136 (153)
26 cd02064 FAD_synthetase_N FAD s 99.6 8.3E-15 1.8E-19 129.6 12.5 145 23-168 2-168 (180)
27 TIGR00125 cyt_tran_rel cytidyl 99.6 5.1E-15 1.1E-19 109.4 7.2 65 22-88 1-65 (66)
28 TIGR01510 coaD_prev_kdtB pante 99.6 3E-14 6.5E-19 123.6 13.0 126 22-158 1-136 (155)
29 cd02166 NMNAT_Archaea Nicotina 99.5 3.7E-14 8.1E-19 124.4 11.2 119 23-156 2-136 (163)
30 PRK05627 bifunctional riboflav 99.5 3E-13 6.4E-18 130.0 15.1 148 22-172 15-187 (305)
31 COG0669 CoaD Phosphopantethein 99.5 6.9E-14 1.5E-18 123.3 8.8 90 20-116 2-92 (159)
32 PRK13964 coaD phosphopantethei 99.5 3.3E-13 7.2E-18 116.9 10.7 90 20-116 1-92 (140)
33 cd02164 PPAT_CoAS phosphopante 99.4 9.9E-13 2.1E-17 113.9 8.7 124 22-153 1-142 (143)
34 cd02168 NMNAT_Nudix Nicotinami 99.3 6.3E-12 1.4E-16 112.6 8.9 123 23-157 2-144 (181)
35 PRK05379 bifunctional nicotina 99.3 1.3E-11 2.9E-16 119.7 11.4 130 18-158 4-150 (340)
36 PRK01153 nicotinamide-nucleoti 99.3 2.2E-11 4.8E-16 108.5 11.9 122 22-157 2-138 (174)
37 COG1019 Predicted nucleotidylt 99.3 2.5E-11 5.3E-16 107.0 9.6 127 18-153 3-144 (158)
38 PLN02388 phosphopantetheine ad 99.3 5.6E-11 1.2E-15 106.9 11.9 132 20-159 19-168 (177)
39 PRK00071 nadD nicotinic acid m 99.3 1E-10 2.2E-15 105.2 13.3 98 18-118 2-113 (203)
40 PRK07143 hypothetical protein; 99.2 2.2E-10 4.8E-15 109.2 15.7 148 21-173 16-177 (279)
41 cd02165 NMNAT Nicotinamide/nic 99.2 1E-10 2.2E-15 104.1 12.4 94 22-118 1-107 (192)
42 cd02167 NMNAT_NadR Nicotinamid 99.2 1.2E-10 2.7E-15 102.0 11.8 127 23-160 2-151 (158)
43 PRK08887 nicotinic acid mononu 99.2 4.2E-10 9.2E-15 99.9 12.1 129 20-157 2-148 (174)
44 cd02156 nt_trans nucleotidyl t 99.1 6.2E-11 1.3E-15 96.0 4.8 57 23-83 2-58 (105)
45 PRK06973 nicotinic acid mononu 99.1 1.2E-09 2.6E-14 102.3 13.6 69 12-84 13-83 (243)
46 PRK13671 hypothetical protein; 99.1 7.4E-10 1.6E-14 106.7 11.6 86 26-115 6-102 (298)
47 PRK07152 nadD putative nicotin 99.1 1.2E-09 2.6E-14 105.8 12.6 134 20-158 1-168 (342)
48 TIGR00482 nicotinate (nicotina 99.0 2.1E-09 4.6E-14 96.1 11.4 91 25-118 2-106 (193)
49 COG1057 NadD Nicotinic acid mo 99.0 3E-09 6.5E-14 97.0 12.4 135 19-158 2-174 (197)
50 PRK08099 bifunctional DNA-bind 99.0 2.5E-09 5.5E-14 106.3 12.4 144 18-173 50-220 (399)
51 TIGR01526 nadR_NMN_Atrans nico 98.9 4.1E-09 8.9E-14 101.8 10.6 65 20-88 1-66 (325)
52 PRK13793 nicotinamide-nucleoti 98.9 2.2E-09 4.8E-14 98.1 7.7 59 21-83 5-63 (196)
53 cd02169 Citrate_lyase_ligase C 98.9 1.5E-08 3.2E-13 97.4 13.4 132 18-158 112-280 (297)
54 smart00764 Citrate_ly_lig Citr 98.9 2E-08 4.4E-13 90.2 12.2 122 27-157 6-164 (182)
55 TIGR00124 cit_ly_ligase [citra 98.9 1E-08 2.2E-13 100.0 10.5 63 20-91 139-202 (332)
56 cd09286 NMNAT_Eukarya Nicotina 98.8 2.7E-08 5.8E-13 91.9 10.8 65 22-90 2-73 (225)
57 TIGR00083 ribF riboflavin kina 98.6 1.7E-07 3.8E-12 89.8 9.4 146 23-169 1-167 (288)
58 PF05636 HIGH_NTase1: HIGH Nuc 98.6 6.4E-08 1.4E-12 96.3 5.1 91 21-115 2-103 (388)
59 COG1056 NadR Nicotinamide mono 98.6 1.2E-07 2.5E-12 85.3 6.1 62 19-84 2-64 (172)
60 PRK13670 hypothetical protein; 98.5 2.8E-07 6E-12 91.7 9.4 91 21-115 2-103 (388)
61 COG0196 RibF FAD synthase [Coe 98.4 1.5E-06 3.2E-11 84.3 11.2 150 20-172 15-187 (304)
62 PF06574 FAD_syn: FAD syntheta 98.4 7E-07 1.5E-11 78.5 7.1 127 20-149 5-156 (157)
63 KOG3351 Predicted nucleotidylt 98.3 5.9E-07 1.3E-11 85.1 5.3 70 11-81 133-203 (293)
64 PLN02945 nicotinamide-nucleoti 98.3 7E-06 1.5E-10 76.2 10.9 72 13-85 15-89 (236)
65 PF08218 Citrate_ly_lig: Citra 98.1 1.6E-05 3.6E-10 72.1 8.6 121 29-158 8-165 (182)
66 COG1323 Predicted nucleotidylt 98.0 1.3E-05 2.9E-10 79.3 7.7 88 25-116 6-104 (358)
67 TIGR00018 panC pantoate--beta- 96.3 0.011 2.5E-07 57.0 6.9 67 22-94 26-95 (282)
68 COG3053 CitC Citrate lyase syn 96.2 0.047 1E-06 53.7 10.9 65 18-91 143-208 (352)
69 PLN02660 pantoate--beta-alanin 95.8 0.024 5.2E-07 54.9 7.0 67 22-94 25-94 (284)
70 PRK00380 panC pantoate--beta-a 95.8 0.017 3.6E-07 55.7 5.6 64 23-92 27-93 (281)
71 cd00560 PanC Pantoate-beta-ala 95.4 0.036 7.9E-07 53.4 6.4 65 22-92 26-93 (277)
72 KOG3199 Nicotinamide mononucle 94.0 0.15 3.2E-06 48.0 6.5 89 16-105 4-102 (234)
73 PRK13477 bifunctional pantoate 93.2 0.16 3.4E-06 52.9 5.9 63 27-92 26-91 (512)
74 PF04931 DNA_pol_phi: DNA poly 92.2 0.19 4.2E-06 54.3 5.0 29 234-262 612-640 (784)
75 PF02569 Pantoate_ligase: Pant 91.8 0.43 9.3E-06 46.3 6.4 60 30-92 31-93 (280)
76 TIGR00339 sopT ATP sulphurylas 90.9 0.75 1.6E-05 46.3 7.3 90 22-116 185-289 (383)
77 COG0414 PanC Panthothenate syn 85.3 0.8 1.7E-05 44.6 3.3 32 28-61 29-60 (285)
78 PLN02341 pfkB-type carbohydrat 81.7 0.41 9E-06 48.7 -0.3 29 19-47 413-441 (470)
79 PF06524 NOA36: NOA36 protein; 79.3 1 2.2E-05 43.8 1.6 14 70-83 56-69 (314)
80 PF04931 DNA_pol_phi: DNA poly 67.1 5.2 0.00011 43.6 3.4 18 228-245 591-608 (784)
81 KOG3042 Panthothenate syntheta 67.0 5.3 0.00012 38.2 3.1 40 19-61 23-62 (283)
82 PF05764 YL1: YL1 nuclear prot 66.4 5 0.00011 37.8 2.8 13 268-280 35-47 (240)
83 PF14812 PBP1_TM: Transmembran 62.1 2.6 5.6E-05 34.2 0.0 9 304-312 50-58 (81)
84 TIGR02026 BchE magnesium-proto 52.2 2.2E+02 0.0048 29.4 12.0 133 23-162 274-427 (497)
85 KOG1189 Global transcriptional 52.0 8.8 0.00019 42.4 2.0 29 25-56 498-526 (960)
86 PRK10992 iron-sulfur cluster r 51.2 8.9 0.00019 35.7 1.7 83 86-170 8-94 (220)
87 KOG0149 Predicted RNA-binding 50.1 30 0.00064 33.4 4.9 71 16-90 8-78 (247)
88 PRK14536 cysS cysteinyl-tRNA s 49.8 25 0.00054 36.8 4.8 31 17-47 20-58 (490)
89 PLN02413 choline-phosphate cyt 48.9 66 0.0014 31.8 7.2 14 248-261 255-268 (294)
90 PF04871 Uso1_p115_C: Uso1 / p 48.2 1.8E+02 0.004 25.2 10.5 26 226-256 84-109 (136)
91 PF02579 Nitro_FeMo-Co: Dinitr 46.4 79 0.0017 24.1 6.1 49 98-156 45-93 (94)
92 PRK12418 cysteinyl-tRNA synthe 46.2 35 0.00076 34.6 5.1 40 19-58 8-56 (384)
93 cd00672 CysRS_core catalytic c 44.3 38 0.00083 31.3 4.7 39 19-57 19-66 (213)
94 PF05086 Dicty_REP: Dictyostel 43.4 71 0.0015 35.7 7.0 34 219-254 852-885 (911)
95 PRK14535 cysS cysteinyl-tRNA s 42.7 37 0.00081 37.2 4.9 42 17-58 245-295 (699)
96 PLN02946 cysteine-tRNA ligase 42.7 36 0.00078 36.3 4.7 41 18-58 78-127 (557)
97 PRK00260 cysS cysteinyl-tRNA s 41.9 37 0.00079 34.8 4.5 39 19-57 22-69 (463)
98 COG0826 Collagenase and relate 41.7 2.2E+02 0.0047 28.5 9.8 118 22-158 29-158 (347)
99 COG2882 FliJ Flagellar biosynt 41.1 2.6E+02 0.0057 25.0 9.2 70 148-226 35-107 (148)
100 PF01747 ATP-sulfurylase: ATP- 40.4 39 0.00085 31.6 4.1 91 17-116 19-125 (215)
101 COG1433 Uncharacterized conser 40.0 1E+02 0.0022 26.6 6.2 48 98-156 57-105 (121)
102 TIGR03492 conserved hypothetic 39.0 93 0.002 31.0 6.8 82 19-114 93-187 (396)
103 PRK13276 cell wall biosynthesi 38.6 19 0.00041 34.0 1.8 82 86-169 8-96 (224)
104 TIGR03471 HpnJ hopanoid biosyn 37.8 1.9E+02 0.0042 29.3 8.9 118 38-162 288-432 (472)
105 TIGR03447 mycothiol_MshC cyste 37.3 51 0.0011 33.8 4.7 41 18-58 34-83 (411)
106 KOG0526 Nucleosome-binding fac 37.2 14 0.0003 39.3 0.7 9 51-59 274-282 (615)
107 PRK04149 sat sulfate adenylylt 37.2 55 0.0012 33.3 4.9 88 21-116 187-290 (391)
108 PTZ00399 cysteinyl-tRNA-synthe 37.1 20 0.00043 38.6 1.9 41 18-58 58-108 (651)
109 TIGR00435 cysS cysteinyl-tRNA 35.9 59 0.0013 33.5 4.9 40 19-58 20-68 (465)
110 KOG1832 HIV-1 Vpr-binding prot 35.8 17 0.00037 41.2 1.1 9 51-59 1115-1123(1516)
111 KOG0943 Predicted ubiquitin-pr 35.2 23 0.00051 41.5 2.0 6 249-254 1682-1687(3015)
112 PF01406 tRNA-synt_1e: tRNA sy 34.9 24 0.00052 34.8 1.8 43 16-58 4-55 (300)
113 TIGR03652 FeS_repair_RIC iron- 34.4 24 0.00051 32.4 1.7 80 88-169 3-89 (216)
114 PRK13848 conjugal transfer pro 33.8 1.5E+02 0.0032 24.9 6.0 33 182-214 2-34 (98)
115 COG0215 CysS Cysteinyl-tRNA sy 33.7 21 0.00047 37.2 1.4 29 21-49 23-59 (464)
116 KOG1824 TATA-binding protein-i 33.1 2.4E+02 0.0052 32.6 9.2 14 161-174 211-224 (1233)
117 KOG1832 HIV-1 Vpr-binding prot 33.0 18 0.00039 41.0 0.7 10 82-91 1237-1246(1516)
118 PF11284 DUF3085: Protein of u 33.0 72 0.0016 26.2 4.1 38 16-56 23-61 (90)
119 KOG4032 Uncharacterized conser 32.9 59 0.0013 30.2 3.9 15 245-259 107-121 (184)
120 cd00517 ATPS ATP-sulfurylase. 32.5 57 0.0012 32.8 4.1 88 22-115 158-261 (353)
121 COG0162 TyrS Tyrosyl-tRNA synt 31.9 1.3E+02 0.0028 30.9 6.5 141 20-175 32-191 (401)
122 PF13483 Lactamase_B_3: Beta-l 31.6 76 0.0016 26.9 4.2 57 19-84 96-155 (163)
123 PRK14534 cysS cysteinyl-tRNA s 31.4 35 0.00075 35.7 2.5 29 19-47 20-56 (481)
124 KOG1189 Global transcriptional 31.3 34 0.00074 38.0 2.4 11 257-267 865-875 (960)
125 PF05764 YL1: YL1 nuclear prot 30.5 49 0.0011 31.2 3.1 8 282-289 57-64 (240)
126 COG2046 MET3 ATP sulfurylase ( 30.1 1.4E+02 0.0031 30.7 6.4 88 21-115 184-286 (397)
127 KOG2314 Translation initiation 29.2 2.5E+02 0.0055 30.6 8.2 43 218-272 630-672 (698)
128 PF10376 Mei5: Double-strand r 29.0 4.3E+02 0.0092 25.0 9.0 56 182-237 137-196 (221)
129 PF10881 DUF2726: Protein of u 28.5 3.4E+02 0.0073 22.3 9.7 116 31-157 4-124 (126)
130 PF03353 Lin-8: Ras-mediated v 27.2 72 0.0016 30.8 3.7 31 213-249 99-129 (313)
131 TIGR00467 lysS_arch lysyl-tRNA 26.7 2.3E+02 0.0051 29.9 7.6 38 22-59 20-65 (515)
132 PRK08462 biotin carboxylase; V 26.0 3.5E+02 0.0077 27.0 8.5 90 20-136 4-102 (445)
133 PF04147 Nop14: Nop14-like fam 25.5 35 0.00076 37.8 1.4 10 69-78 80-89 (840)
134 cd00674 LysRS_core_class_I cat 25.4 89 0.0019 31.3 4.1 36 21-56 20-63 (353)
135 COG3563 KpsC Capsule polysacch 25.2 2.7E+02 0.0059 30.0 7.5 83 34-120 497-589 (671)
136 cd02068 radical_SAM_B12_BD B12 24.9 1.4E+02 0.0031 24.4 4.6 13 102-114 86-98 (127)
137 KOG2393 Transcription initiati 24.3 39 0.00085 35.9 1.4 27 276-302 282-308 (555)
138 KOG2623 Tyrosyl-tRNA synthetas 24.0 1.8E+02 0.004 30.3 6.0 133 20-162 63-220 (467)
139 KOG1991 Nuclear transport rece 23.2 1.3E+02 0.0028 34.4 5.1 12 272-283 897-908 (1010)
140 COG2846 Regulator of cell morp 22.6 60 0.0013 30.8 2.1 79 89-169 11-94 (221)
141 PF04147 Nop14: Nop14-like fam 22.3 42 0.00091 37.3 1.2 13 145-157 179-191 (840)
142 cd00851 MTH1175 This uncharact 22.2 2.9E+02 0.0064 21.3 5.8 45 98-153 55-100 (103)
143 KOG3130 Uncharacterized conser 22.1 78 0.0017 33.0 2.9 16 247-262 237-252 (514)
144 PF02639 DUF188: Uncharacteriz 21.9 5.2E+02 0.011 22.3 11.2 99 84-195 27-127 (130)
145 cd00805 TyrRS_core catalytic c 21.9 1.8E+02 0.004 27.6 5.3 32 30-61 12-44 (269)
146 PRK15452 putative protease; Pr 21.8 9.1E+02 0.02 25.0 10.9 60 85-151 89-149 (443)
147 PRK13753 dihydropteroate synth 21.7 7.6E+02 0.017 24.1 13.8 164 23-197 6-199 (279)
148 PF13727 CoA_binding_3: CoA-bi 21.7 81 0.0018 26.2 2.6 46 50-95 103-151 (175)
149 TIGR01299 synapt_SV2 synaptic 21.3 53 0.0012 35.9 1.7 10 270-279 51-60 (742)
150 KOG3369 Transport protein part 21.1 1.3E+02 0.0028 28.1 3.9 128 20-167 40-174 (199)
151 KOG3241 Uncharacterized conser 21.1 88 0.0019 29.3 2.8 14 263-276 182-195 (227)
152 KOG1991 Nuclear transport rece 21.0 50 0.0011 37.5 1.4 7 148-154 748-754 (1010)
153 PF08537 NBP1: Fungal Nap bind 20.9 8.7E+02 0.019 24.5 10.1 51 159-209 147-201 (323)
154 PF03344 Daxx: Daxx Family; I 20.7 33 0.00071 37.6 0.0 14 165-178 303-316 (713)
155 PF06320 GCN5L1: GCN5-like pro 20.3 5.5E+02 0.012 21.9 8.6 72 183-256 47-118 (121)
No 1
>PLN02413 choline-phosphate cytidylyltransferase
Probab=100.00 E-value=1.1e-79 Score=580.18 Aligned_cols=276 Identities=86% Similarity=1.344 Sum_probs=256.5
Q ss_pred CCCCCCCCCCCCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhcc
Q 020938 5 NSNNSNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCK 84 (319)
Q Consensus 5 ~~~~~~~~~~~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k 84 (319)
++..+...+++|..|+++||++|||||||+||+++|+|||++||+++|||||++|++++++||+|||++.||+++|+||+
T Consensus 12 ~~~~~~~~~~~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acK 91 (294)
T PLN02413 12 ASSGSATPSSSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCK 91 (294)
T ss_pred cccccCCCCCCCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcc
Confidence 44455668888999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCcccccCCCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHhhHHHHH
Q 020938 85 WVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVM 164 (319)
Q Consensus 85 ~VDeVVi~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~yd~y~~ 164 (319)
|||+||+++||.++.+||++++||+||||+++|.++.+.+.|+|+.++++|+|..++||+|+|||+||.||+++|+.|++
T Consensus 92 yVDeVV~~aP~~~t~efI~~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~~Y~~ 171 (294)
T PLN02413 92 WVDEVIPDAPWVITQEFLDKHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVM 171 (294)
T ss_pred cccEEeeCCCccccHHHHHHhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987766678999999999999999999999999999999999999999
Q ss_pred HHhhcCCcccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHhcccc
Q 020938 165 RNLDRGYSRKDLGVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEKIQTVA----MHRNEWVENADRWVAGFLEMFEEGCH 240 (319)
Q Consensus 165 Rnl~rG~~~~~lnv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~w~~~~~~~~~~f~~~f~~~~~ 240 (319)
||++||++++||||||+|+++|+++++|++|++||+++++++++++++++ +++++|+++|++||.+||++|+++||
T Consensus 172 Rn~~rg~~~~~l~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~ 251 (294)
T PLN02413 172 RNLARGYSRKDLGVSYVKEKRLRVNMGLKKLREKVKEQQEKVGEKIQTVAKTAGMHRNEWVENADRWVAGFLEKFEEGCH 251 (294)
T ss_pred HHHHhcCCHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887 78999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhcCCCCcc--ccCCCCCCCCCCcccccc
Q 020938 241 KMGTAIRDRIQERLRGQGSGKY--LLPNGEEEEDDDEEYYYD 280 (319)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 280 (319)
.|+|+||+|||++|++|+++.. .+++|..++++++++||+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (294)
T PLN02413 252 KMGTAIKDRIQERLMRQQSSGLLELLQNGDVDSDDDDDEYYD 293 (294)
T ss_pred HHHHHHHHHHHHHhccccccccccccccCCCcccccchhhcc
Confidence 9999999999999999999886 344455544444444443
No 2
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-78 Score=573.02 Aligned_cols=249 Identities=59% Similarity=0.985 Sum_probs=233.5
Q ss_pred CCCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccCC
Q 020938 14 TAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDA 93 (319)
Q Consensus 14 ~~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~a 93 (319)
..|..||+|||++|+|||||.||+++|+|||++|||.|||||||+|+.++++||++||++.||++.|+||||||+||.+|
T Consensus 57 ~~p~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~A 136 (348)
T KOG2804|consen 57 GLPTDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNA 136 (348)
T ss_pred CCCCCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCC
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHhhHHHHHHHhhcCCcc
Q 020938 94 PWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYSR 173 (319)
Q Consensus 94 p~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~yd~y~~Rnl~rG~~~ 173 (319)
||.+|++||.+|+||+|+|+++||... ..+|+|+.+|++|+|+.++||+|||||+||.||+++|+.|++|||+|||||
T Consensus 137 PW~lt~EFL~~HKIDfVAHDdIPY~s~--gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~YvrRNL~RGys~ 214 (348)
T KOG2804|consen 137 PWTLTPEFLEKHKIDFVAHDDIPYVSA--GSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYDVYVRRNLARGYSA 214 (348)
T ss_pred CccccHHHHHhcccceeeccCccccCC--CchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHHHHHHhhhcccCCH
Confidence 999999999999999999999999843 458999999999999999999999999999999999999999999999999
Q ss_pred cccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 020938 174 KDLGVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEKIQTVAMHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQER 253 (319)
Q Consensus 174 ~~lnv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~ 253 (319)
++|||||+++++|+++++|++|++++|.++++++++ +.+++++|+++|++||++||++|+++|| .+++.++++.+
T Consensus 215 keLnVsfl~~kk~~~~~k~~~lk~~vk~~~e~~~~~---~~~l~~kW~e~s~e~i~~fle~f~~~~~--~n~~~~~~~~r 289 (348)
T KOG2804|consen 215 KELNVSFLKEKKLRLQNKVDELKEKVKEQQEKVKEF---SRDLIQKWEEKSREFIAGFLELFGKGGA--LNAFDDELKGR 289 (348)
T ss_pred HhcchHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHhHHHHHHHHHHHhccccc--hhhhHhHHHHH
Confidence 999999999999999999999999999999999988 5678999999999999999999999998 77888888877
Q ss_pred hhcCCCCcc---ccCCCCC
Q 020938 254 LRGQGSGKY---LLPNGEE 269 (319)
Q Consensus 254 ~~~~~~~~~---~~~~~~~ 269 (319)
|+++.|... ...+|.+
T Consensus 290 l~~~~Sp~~sp~~~~~g~~ 308 (348)
T KOG2804|consen 290 LLQALSPPQSPSGSTNGRD 308 (348)
T ss_pred HHhhcCCCCCCCCCCCCCC
Confidence 777766654 3455554
No 3
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=100.00 E-value=7.5e-42 Score=296.91 Aligned_cols=150 Identities=62% Similarity=1.031 Sum_probs=141.7
Q ss_pred CCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCch
Q 020938 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVT 98 (319)
Q Consensus 19 r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~ap~~~t 98 (319)
++++||++|+|||||.||+++|++|+++||+++|||||++|+++.++||+|+++++||+++|++|+|||+|++.+|+.++
T Consensus 1 ~~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~ 80 (150)
T cd02174 1 RPVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTT 80 (150)
T ss_pred CCeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCCh
Confidence 46799999999999999999999999998778999999999999999999999999999999999999999999999989
Q ss_pred HHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHhhHHHHHHHhhcC
Q 020938 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRG 170 (319)
Q Consensus 99 ~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~yd~y~~Rnl~rG 170 (319)
.++|++++||++++|++|+.+. .+.++|+.+++.|++++++||+++|||.|++||+++|+.|.+||+.+|
T Consensus 81 ~~~i~~~~~d~vv~G~d~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~~~~~r~~~~~ 150 (150)
T cd02174 81 PEFLDKYKCDYVAHGDDIYLDA--DGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYRDYHRRNLQRG 150 (150)
T ss_pred HHHHHHhCCCEEEECCCCCCCC--CchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHHHHHHhhhccC
Confidence 9999999999999999987653 346899999999999999999999999999999999999999999987
No 4
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=100.00 E-value=1.6e-39 Score=282.66 Aligned_cols=149 Identities=38% Similarity=0.639 Sum_probs=137.9
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC--CCCCCHHHHHHHHHhccCCcccccCCCCCc
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDAPWVV 97 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG--rPV~s~eER~e~V~a~k~VDeVVi~ap~~~ 97 (319)
.++||++|+|||||+||+++|++|+++| ++|||||++|+.++..|| +|+||++||+++|.+|+|||+|++.+|+.+
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lg--d~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~ 79 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELG--DYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVI 79 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcC--CEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcc
Confidence 3589999999999999999999999995 899999999999998887 599999999999999999999999999988
Q ss_pred hHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHhhHHHHHHHhhcC
Q 020938 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRG 170 (319)
Q Consensus 98 t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~yd~y~~Rnl~rG 170 (319)
+.+++++++||++++|.++..+....+.++|..++..|++..+++++++|||+||+||+++|+.|++||.+||
T Consensus 80 ~~~~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~~~~y~~r~~~k~ 152 (152)
T cd02173 80 TKELIEHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKNRLAYEARNKKKE 152 (152)
T ss_pred hHHHHHHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHhHHHHHHHHhccC
Confidence 9999999999999999987654212357899999999999999999999999999999999999999999986
No 5
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=1.1e-39 Score=322.83 Aligned_cols=164 Identities=35% Similarity=0.544 Sum_probs=147.9
Q ss_pred CCCCCCCCCCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC--CCCCCHHHHHHHHHhcc
Q 020938 7 NNSNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCK 84 (319)
Q Consensus 7 ~~~~~~~~~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG--rPV~s~eER~e~V~a~k 84 (319)
+|++++.|.| ..++||++||||+||.||+++|++|+++| ++|||||++|+.++++|| +|||+++||+++|++|+
T Consensus 240 qf~~g~~p~~--~~~iVyv~G~FDlfH~GHi~~L~~Ak~lG--d~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack 315 (418)
T PLN02406 240 QFSNGKGPGP--DARIVYIDGAFDLFHAGHVEILRLARALG--DFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACR 315 (418)
T ss_pred HHhccCCCCC--CCeEEEECCeeccCCHHHHHHHHHHHHhC--CEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccC
Confidence 5677766555 44599999999999999999999999995 899999999999999998 69999999999999999
Q ss_pred CCcccccCCCCCchHHHHhhcCCcEEEecCCcccc-cCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHhhHHHH
Q 020938 85 WVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYAD-ASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYV 163 (319)
Q Consensus 85 ~VDeVVi~ap~~~t~e~L~~~kpD~VvhG~d~y~d-~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~yd~y~ 163 (319)
|||+||+++||.++.++|++++||+||||+++... ..+.+.|.|...+.+|+|..++|++++|||+||+||+++++.|+
T Consensus 316 ~VD~VVi~ap~~~~~~~i~~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~~~~~y~ 395 (418)
T PLN02406 316 YVDEVIIGAPWEVSKDMITTFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVANHEAYQ 395 (418)
T ss_pred cccEEEeCCCCCCCHHHHHHhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999865322 12345789999999999999999999999999999999999999
Q ss_pred HHHhhcCCccc
Q 020938 164 MRNLDRGYSRK 174 (319)
Q Consensus 164 ~Rnl~rG~~~~ 174 (319)
+||.+|+.++.
T Consensus 396 ~Rn~~K~~ke~ 406 (418)
T PLN02406 396 KRNEKKAESEK 406 (418)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 6
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=8.9e-38 Score=303.92 Aligned_cols=163 Identities=34% Similarity=0.541 Sum_probs=145.5
Q ss_pred CCCCCCCCCCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC--CCCCCHHHHHHHHHhcc
Q 020938 7 NNSNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCK 84 (319)
Q Consensus 7 ~~~~~~~~~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG--rPV~s~eER~e~V~a~k 84 (319)
+|+.+.. |....++||++|||||||.||+++|++|+++| |+|||||++|+++++.|| +|+|+++||+++|++|+
T Consensus 181 ~~~~~~~--~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lg--d~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~ 256 (353)
T PTZ00308 181 QFSNNRS--PKPGDRIVYVDGSFDLFHIGHIRVLQKARELG--DYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCR 256 (353)
T ss_pred eccccCC--CCCCCeEEEECCccCCCCHHHHHHHHHHHHhC--CEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhC
Confidence 4555443 44455799999999999999999999999996 899999999999999998 59999999999999999
Q ss_pred CCcccccCCCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHhhHHHHH
Q 020938 85 WVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVM 164 (319)
Q Consensus 85 ~VDeVVi~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~yd~y~~ 164 (319)
|||+|++.+|+.++.+++++++||++|||.++.......+.|.|+..+.+|+|..+++++++|||+||+||+++|+.|++
T Consensus 257 ~Vd~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt~ii~RI~~~r~~~~~ 336 (353)
T PTZ00308 257 YVDEVVIGAPFDVTKEVIDSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVDRVVKNRLAFLK 336 (353)
T ss_pred CCCeEEEcCCCCChHHHHHHhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999987542122357899999999999999999999999999999999999999
Q ss_pred HHhhcCCcc
Q 020938 165 RNLDRGYSR 173 (319)
Q Consensus 165 Rnl~rG~~~ 173 (319)
||.+|+.+.
T Consensus 337 r~~~k~~~e 345 (353)
T PTZ00308 337 RQAKKRAKE 345 (353)
T ss_pred HHHHHHHHH
Confidence 999997643
No 7
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-38 Score=301.34 Aligned_cols=139 Identities=47% Similarity=0.791 Sum_probs=132.1
Q ss_pred CCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccCCC
Q 020938 15 APSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAP 94 (319)
Q Consensus 15 ~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~ap 94 (319)
+...+|.+||++||||++|.||.++|+|||++ |++|||||+||+.+...||.|||+.+||++|+++|||||+||.++|
T Consensus 3 ~~~~~~~rVw~DGCfDm~HyGHanaLrQAkal--GdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~AP 80 (358)
T KOG2803|consen 3 PKKNRPVRVWADGCFDMVHYGHANALRQAKAL--GDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAP 80 (358)
T ss_pred CcCCCceeEEeccchhhhhhhhhHHHHHHHHh--CCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCC
Confidence 45678999999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHH
Q 020938 95 WVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVK 157 (319)
Q Consensus 95 ~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~ 157 (319)
+.++.++++++++|++|||+++..++ .|.|.|..+|++|++.++.||.|+|||+|+.||+-
T Consensus 81 yvtt~~~md~y~cd~vvHGdDit~~a--~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll 141 (358)
T KOG2803|consen 81 YVTTLEWMDKYGCDYVVHGDDITLDA--DGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLL 141 (358)
T ss_pred eeccHHHHHHhCCeEEEeCCcceecC--CCccHHHHHHHhcchheeeeccCcchhhhhhHhhh
Confidence 99999999999999999999877765 57899999999999999999999999999999863
No 8
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=100.00 E-value=8.4e-36 Score=257.49 Aligned_cols=132 Identities=45% Similarity=0.586 Sum_probs=116.8
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccc-cCCCCCCCHHHHHHHHHhccCCcccccCCCCCch
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHK-FKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVT 98 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~-~KGrPV~s~eER~e~V~a~k~VDeVVi~ap~~~t 98 (319)
|++||++||||+||+||+++|+|||++| ++|||.+..|+.+.+ .||.|||++++|+++|++|+|||+||+++||..+
T Consensus 1 ~~rV~~~GtFDilH~GHi~~L~~Ak~lG--d~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~ 78 (140)
T COG0615 1 MKRVWADGTFDILHPGHIEFLRQAKKLG--DELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIK 78 (140)
T ss_pred CcEEEEeeEEEEechhHHHHHHHHHHhC--CeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccC
Confidence 4679999999999999999999999996 788888888877766 6677999999999999999999999999999999
Q ss_pred HHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCC------CChHHHHHHHHH
Q 020938 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDG------ISTSDIIMRIVK 157 (319)
Q Consensus 99 ~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~g------iSTTdII~RIl~ 157 (319)
.+++.+++||+||||++|+.+. +.+.|+..+ +|.+.+++||+| +||++|+.||..
T Consensus 79 ~~~i~~~k~Div~lG~D~~~d~---~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~ 139 (140)
T COG0615 79 FEDIEEYKPDIVVLGDDQKFDE---DDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE 139 (140)
T ss_pred hHHHHHhCCCEEEECCCCcCCh---HHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence 9999999999999999998542 455666666 999999999999 788888888753
No 9
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=4.1e-34 Score=283.21 Aligned_cols=141 Identities=41% Similarity=0.726 Sum_probs=128.8
Q ss_pred CCCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccCC
Q 020938 14 TAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDA 93 (319)
Q Consensus 14 ~~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~a 93 (319)
.....++.+||++||||+||.||+++|+||+++| ++|||||+||+.+.++||.|++|++||+++|++|+|||+|++++
T Consensus 47 ~~~~~~~~rV~~~G~FDllH~GH~~~L~qAk~lG--d~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~a 124 (418)
T PLN02406 47 KKKKKKPVRVYMDGCFDMMHYGHANALRQARALG--DELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDA 124 (418)
T ss_pred cccCCCceEEEEcCeeCCCCHHHHHHHHHHHHhC--CEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCC
Confidence 3455677899999999999999999999999995 89999999999999999999999999999999999999999999
Q ss_pred CCCchHHHH----hhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHh
Q 020938 94 PWVVTQEFL----DKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKD 158 (319)
Q Consensus 94 p~~~t~e~L----~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~ 158 (319)
||.++.+++ ++++||++|||+||.... .+.+.|..++..|++..++||+|+|||+|+.||+..
T Consensus 125 py~~~~d~~~~li~~~~~D~vVhGdD~~~~~--~g~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~~ 191 (418)
T PLN02406 125 PYAITEEFMNKLFNEYNIDYIIHGDDPCLLP--DGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLC 191 (418)
T ss_pred ccccchHHHHHHHHHhCCCEEEECCCccccC--CchHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 998888777 489999999999876533 467899999999999999999999999999999853
No 10
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=8.9e-33 Score=268.97 Aligned_cols=145 Identities=41% Similarity=0.699 Sum_probs=132.4
Q ss_pred CCCCCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCccccc
Q 020938 12 TDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIP 91 (319)
Q Consensus 12 ~~~~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi 91 (319)
+.|+...++++||++||||++|+||+++|+||++++ +.|+|||++|+.+.+.||.|+++++||+++|++|+|||+|++
T Consensus 3 ~~~~~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g--~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~ 80 (353)
T PTZ00308 3 PIPPKKPGTIRVWVDGCFDMLHFGHANALRQARALG--DELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVE 80 (353)
T ss_pred CCCCCCCCcEEEEEEeecccCCHHHHHHHHHHHHhC--CEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEE
Confidence 445556677899999999999999999999999995 899999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHhhH
Q 020938 92 DAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYN 160 (319)
Q Consensus 92 ~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~yd 160 (319)
++||..+.+||++++||+||||+|+..+. .+.+.|+.+++.|+++.++||+|+|||+||.||+....
T Consensus 81 ~~p~~~~~~fI~~l~~d~vv~GdD~~~g~--~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~ 147 (353)
T PTZ00308 81 GYPYTTRLEDLERLECDFVVHGDDISVDL--NGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTK 147 (353)
T ss_pred CCCCCchHHHHHHhCCCEEEECCCCCCCC--CccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhh
Confidence 89998889999999999999999876653 35678999999999999999999999999999997654
No 11
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.97 E-value=2.2e-32 Score=261.10 Aligned_cols=164 Identities=38% Similarity=0.593 Sum_probs=145.6
Q ss_pred CCCCCCCCCCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCC--CCCCHHHHHHHHHhcc
Q 020938 7 NNSNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGK--TVMTEDERYESLRHCK 84 (319)
Q Consensus 7 ~~~~~~~~~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGr--PV~s~eER~e~V~a~k 84 (319)
+|++++.|.|+.+ +||++|.|||||.||+.+|+.|+.+| ++|||||++|+.++.+||. ||||+.||.+.|.+||
T Consensus 187 ~~~~G~~p~p~~k--vVYvdGaFDLFH~GHl~~Le~ak~lg--dyLIvGI~~D~~vneykgs~~PiMnl~ER~Lsvlack 262 (358)
T KOG2803|consen 187 QFSNGREPKPTDK--VVYVDGAFDLFHAGHLDFLEKAKRLG--DYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLACK 262 (358)
T ss_pred EeecCCCCCCCCc--EEEEcCchhhhccchHHHHHHHHhcc--CceEEEeecCcchhhhccCCCccchHHHHHHHHhhhc
Confidence 4677776666665 89999999999999999999999996 7999999999999999995 9999999999999999
Q ss_pred CCcccccCCCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHhhHHHHH
Q 020938 85 WVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVM 164 (319)
Q Consensus 85 ~VDeVVi~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~yd~y~~ 164 (319)
|||+||+++||.++.++|+.++++.|+||..+... ...+.|..++..|.+........++|..|++||..++..|..
T Consensus 263 yVdeVvvGaP~~v~s~~i~~~~~~~v~~g~~~~~~---~~~~py~~~k~~~i~~~~~~~~dltte~Iv~RIis~r~~Ye~ 339 (358)
T KOG2803|consen 263 YVDEVVVGAPYEVTSEFIKLFNIDKVAHGTIPDFR---DPSDPYADPKRRGIFEEADSGSDLTTELIVERIISNRQAYEA 339 (358)
T ss_pred ccceEEEcCchhccHHHHHhcCceEEEEecccccc---CccCccccchhhcchhhcCCcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999833221 234478889999998888766669999999999999999999
Q ss_pred HHhhcCCcccccC
Q 020938 165 RNLDRGYSRKDLG 177 (319)
Q Consensus 165 Rnl~rG~~~~~ln 177 (319)
||.+|+.+...++
T Consensus 340 Rn~kk~~k~~~~~ 352 (358)
T KOG2803|consen 340 RNQKKEGKEAPLN 352 (358)
T ss_pred HhHHhhhcccchh
Confidence 9999998876553
No 12
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.94 E-value=4.2e-26 Score=196.16 Aligned_cols=136 Identities=28% Similarity=0.278 Sum_probs=114.5
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchHH
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQE 100 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~ap~~~t~e 100 (319)
.+|++.|+||++|.||.++|++|++++ +.++|++++|+.+...+++|++|.+||+++|++|+|||.|++. |...+.+
T Consensus 5 ~~vv~~G~FDgvH~GH~~ll~~a~~~~--~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~~-~~~~~~~ 81 (144)
T cd02172 5 TVVLCHGVFDLLHPGHVRHLQAARSLG--DILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVLF-DNPTALE 81 (144)
T ss_pred EEEEEecccCCCCHHHHHHHHHHHHhC--CeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEEC-CCCCHHH
Confidence 469999999999999999999999996 7999999999887766777999999999999999999999875 4445789
Q ss_pred HHhhcCCcEEEecCCcccccCC---CcchHHHHHHhcC-eEEEcccCCCCChHHHHHHHHHhhH
Q 020938 101 FLDKHQIDFVAHDSLPYADASG---AGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVKDYN 160 (319)
Q Consensus 101 ~L~~~kpD~VvhG~d~y~d~~~---~~~D~y~~lK~~G-~~~~~~rT~giSTTdII~RIl~~yd 160 (319)
||++++|++||+|.++-..... ....-++.++++| ++.+. ||+++|||+||+||+.+|+
T Consensus 82 fi~~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~-~~~~~sts~li~~i~~~~~ 144 (144)
T cd02172 82 IIDALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFT-GEIVFSSSALINRIFDELD 144 (144)
T ss_pred HHHHhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEe-cCCCcchHHHHHHHHhhcC
Confidence 9999999999999876432211 0122367788886 66777 9999999999999999885
No 13
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.94 E-value=8.5e-26 Score=189.88 Aligned_cols=133 Identities=41% Similarity=0.611 Sum_probs=116.0
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchH
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQ 99 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~ap~~~t~ 99 (319)
|++|++.|+||+||.||+.+|++|++++ ++|+|||++|..+...|+.|+++.++|+++|++|++||.|++.+|+....
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~ 78 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLG--DYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWSYFK 78 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH
Confidence 5789999999999999999999999996 79999999998877677779999999999999999999999988887544
Q ss_pred HHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcc--cCCCCChHHHHHHHHH
Q 020938 100 EFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETK--RTDGISTSDIIMRIVK 157 (319)
Q Consensus 100 e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~--rT~giSTTdII~RIl~ 157 (319)
.|..++||++++|.++.... .+...|+.+++.|.++.++ ++.++|||.|+++|++
T Consensus 79 -~l~~~~~~~vv~G~d~~fg~--~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~ 135 (136)
T cd02170 79 -PLEELKPDVIVLGDDQKNGV--DEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE 135 (136)
T ss_pred -HHHHHCCCEEEECCCCCCCC--cchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence 46779999999999875532 2334688999999888888 8999999999999864
No 14
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.94 E-value=8.1e-26 Score=194.16 Aligned_cols=131 Identities=26% Similarity=0.340 Sum_probs=112.8
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC--CCCCCHHHHHHHHHhccCCcccccCCCCCc
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDAPWVV 97 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG--rPV~s~eER~e~V~a~k~VDeVVi~ap~~~ 97 (319)
+.+||+.|+||.+|.||+.+|++|++++ +.++|||++|+...++|+ .|+++.+||+++|.+|+|||.|++.+++.
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~--~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~~- 87 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALG--DRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDEDT- 87 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhC--CccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCCC-
Confidence 4579999999999999999999999995 789999999998776665 58999999999999999999999966554
Q ss_pred hHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEcccCCCCChHHHHHHHHH
Q 020938 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVK 157 (319)
Q Consensus 98 t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~~rT~giSTTdII~RIl~ 157 (319)
..+|++.++|+++++|.|+..+ ....++.++++| +++.+|+++++|||+|++||++
T Consensus 88 ~~~fi~~l~~~~vv~G~d~~~~----~~~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~~ 144 (144)
T TIGR02199 88 PEELIGELKPDILVKGGDYKVE----TLVGAELVESYGGQVVLLPFVEGRSTTAIIEKILK 144 (144)
T ss_pred HHHHHHHhCCCEEEECCCCCCC----cchhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHhC
Confidence 5899999999999999975432 122356788875 9999999999999999999963
No 15
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.93 E-value=2.2e-25 Score=185.97 Aligned_cols=123 Identities=31% Similarity=0.445 Sum_probs=104.7
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchHHHH
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFL 102 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~ap~~~t~e~L 102 (319)
|++.|+||++|.||+++|++|++++ ++|+|||++|+.....+..|+++.+||+++|++|+|||.|++..||....+++
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~--~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l 78 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLG--DYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDI 78 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcC--CEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCccchHHHH
Confidence 5789999999999999999999996 78999999998776655678999999999999999999998888887667778
Q ss_pred hhcCCcEEEecCCcccccCCCcchHHHHHHhc-C-eEEEcccCCCCChHHHHHHH
Q 020938 103 DKHQIDFVAHDSLPYADASGAGKDVYEFVKAA-G-KFKETKRTDGISTSDIIMRI 155 (319)
Q Consensus 103 ~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~-G-~~~~~~rT~giSTTdII~RI 155 (319)
..++|+++++|.|+- + -++.+++. | .+..+++++++|||.|++.|
T Consensus 79 ~~~~~~~vv~G~D~~----g----~~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 79 IDFNIDVFVMGDDWE----G----KFDFLKDECPLKVVYLPRTEGVSTTKIKKEI 125 (125)
T ss_pred HHcCCCEEEECCCcc----c----hHHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence 999999999999752 1 13345444 3 67788999999999998754
No 16
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=4.5e-25 Score=217.26 Aligned_cols=131 Identities=26% Similarity=0.357 Sum_probs=113.5
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC--CCCCCHHHHHHHHHhccCCcccccCCCCCc
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDAPWVV 97 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG--rPV~s~eER~e~V~a~k~VDeVVi~ap~~~ 97 (319)
+++|+++||||++|.||+.||.|||++| |.|||||+||+++++.|| |||.+++.|+.+|.++..||.||+.... +
T Consensus 332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lg--d~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~ed-T 408 (467)
T COG2870 332 KKVVFTNGCFDILHAGHVTYLAQARALG--DRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFDED-T 408 (467)
T ss_pred CeEEEecchhhhccccHHHHHHHHHhhC--CeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEecCC-C
Confidence 3489999999999999999999999995 999999999999999999 7999999999999999999999996553 3
Q ss_pred hHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhc-CeEEEcccCCCCChHHHHHHHHH
Q 020938 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAA-GKFKETKRTDGISTSDIIMRIVK 157 (319)
Q Consensus 98 t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~-G~~~~~~rT~giSTTdII~RIl~ 157 (319)
..++|+.++||++|+|.|+..+. ..|.+ .+..+ |++..++...|+|||.||.+|..
T Consensus 409 P~~LI~~~~PdilVKGgDy~~~~-i~g~~---~v~~~GG~v~~i~f~~g~STt~ii~ki~~ 465 (467)
T COG2870 409 PEELIEAVKPDILVKGGDYKIEK-IVGAD---IVEAYGGEVLLIPFEEGKSTTKIIEKIRA 465 (467)
T ss_pred HHHHHHHhCcceEEccCCCChhh-ccchh---hhhhcCCeEEEEecccCCcHHHHHHHHhc
Confidence 47889999999999999754432 23333 35555 59999999999999999999975
No 17
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.92 E-value=3.7e-24 Score=178.46 Aligned_cols=128 Identities=30% Similarity=0.383 Sum_probs=108.4
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchH
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQ 99 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~ap~~~t~ 99 (319)
|++|++.|+||++|.||+.+|++|++++ +.|+|||++|+.....+..|++|.++|+++|++|+|||.|++..+|....
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~--~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~ 78 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALG--DKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNWEQKI 78 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhC--CEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCccChH
Confidence 5689999999999999999999999996 78999999997533222258999999999999999999998766766556
Q ss_pred HHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHH
Q 020938 100 EFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVK 157 (319)
Q Consensus 100 e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~ 157 (319)
+.++.++|+++++|.|+- + .++.+++.|.++.++++.++|||.|++.|.+
T Consensus 79 ~~~~~l~~~~vv~G~d~~----g----~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~ 128 (129)
T cd02171 79 EDIKKYNVDVFVMGDDWE----G----KFDFLKEYCEVVYLPRTKGISSTQLKEMLKK 128 (129)
T ss_pred HHHHHhCCCEEEECCCCc----c----hHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence 667889999999998651 1 2567888999999999999999999988754
No 18
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.91 E-value=4.1e-24 Score=211.14 Aligned_cols=131 Identities=25% Similarity=0.305 Sum_probs=113.1
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC--CCCCCHHHHHHHHHhccCCcccccCCCCCc
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPDAPWVV 97 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG--rPV~s~eER~e~V~a~k~VDeVVi~ap~~~ 97 (319)
.++||+.|+||++|.||+++|++|++++ ++|+|||++|+.+.++|| +|++++++|.++|.+|+|||+|++.+ ...
T Consensus 340 ~~iv~~~G~fD~~H~GH~~~l~~a~~~~--~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~ 416 (473)
T PRK11316 340 EKIVMTNGCFDILHAGHVSYLANARKLG--DRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDT 416 (473)
T ss_pred CeEEEEecccccCCHHHHHHHHHHHHhC--CeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCC
Confidence 4689999999999999999999999995 789999999999988886 58999999999999999999998754 335
Q ss_pred hHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHH
Q 020938 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIV 156 (319)
Q Consensus 98 t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl 156 (319)
..+|+++++||+|++|.++.... ....+...+..|+++++||++++|||+|++||.
T Consensus 417 ~~~~~~~~~~d~vv~G~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~ 472 (473)
T PRK11316 417 PQRLIAEILPDLLVKGGDYKPEE---IAGSKEVWANGGEVKVLNFEDGCSTTNIIKKIR 472 (473)
T ss_pred HHHHHHHhCCCEEEECCCCCCCc---cccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHh
Confidence 67999999999999998764321 123455556678999999999999999999995
No 19
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.81 E-value=9.9e-20 Score=158.80 Aligned_cols=130 Identities=19% Similarity=0.262 Sum_probs=96.1
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc----cCCccccc---C
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC----KWVDEVIP---D 92 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~----k~VDeVVi---~ 92 (319)
|.+|++.|+||+||.||+.+|++|+.++ ++|||||++|+.+..+|+.|+++.++|++||+.+ ...+.+.+ .
T Consensus 1 ~~~v~~gGtFDplH~GH~~ll~~A~~~~--d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~ 78 (153)
T PRK00777 1 MMKVAVGGTFDPLHDGHRALLRKAFELG--KRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKFLKAVEYDREYEIVKID 78 (153)
T ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcC--CEEEEEEcCCccccccCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 4579999999999999999999999995 7999999999988777778999999999999953 12222221 2
Q ss_pred CCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcC----eEEEccc-----CCCCChHHHHHHHHHhh
Q 020938 93 APWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETKR-----TDGISTSDIIMRIVKDY 159 (319)
Q Consensus 93 ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G----~~~~~~r-----T~giSTTdII~RIl~~y 159 (319)
+++.++. ..++|++|.|.+.+.+ +..+-+..++.| .++.++. ++.+|||.|++++....
T Consensus 79 d~~gp~~----~~~~d~ivvs~et~~~----~~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~~ 146 (153)
T PRK00777 79 DPYGPAL----EDDFDAIVVSPETYPG----ALKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDEH 146 (153)
T ss_pred ccCCCcc----ccCCCEEEEChhhhhh----HHHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhccc
Confidence 3443322 2369999999874432 233444555666 4566665 67899999999987653
No 20
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.74 E-value=4e-17 Score=142.33 Aligned_cols=128 Identities=16% Similarity=0.090 Sum_probs=96.9
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCch
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVT 98 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi~ap~~~t 98 (319)
|++++++|+|||+|.||+.++++|++.| |.|+|++++++ .| +|+++.++|++||+. +++++.|.+......+
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~--d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t 73 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLF--DEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEVVSFDGLL 73 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHC--CEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEEecCCccH
Confidence 4689999999999999999999999997 89999998764 23 589999999999997 8999999886555678
Q ss_pred HHHHhhcCCcEEEecCCcccccCCCcchHHHHH--HhcC----eEEEcccC---CCCChHHHHHHHHHh
Q 020938 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFV--KAAG----KFKETKRT---DGISTSDIIMRIVKD 158 (319)
Q Consensus 99 ~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~l--K~~G----~~~~~~rT---~giSTTdII~RIl~~ 158 (319)
.++++.+++++++.|.+...+|. .....+ .+.| ..+++..+ ..+|||.|+++|...
T Consensus 74 ~~~~~~~~~~~~~~gl~~w~d~e----~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g 138 (159)
T PRK00168 74 VDFAREVGATVIVRGLRAVSDFE----YEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLG 138 (159)
T ss_pred HHHHHHcCCCEEEecCcchhhHH----HHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcC
Confidence 99999999999999975444431 111111 1111 12333233 369999999998643
No 21
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.70 E-value=2.2e-16 Score=139.69 Aligned_cols=122 Identities=21% Similarity=0.276 Sum_probs=91.6
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCc-cc--ccCCCCCc
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVD-EV--IPDAPWVV 97 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VD-eV--Vi~ap~~~ 97 (319)
++++.|+|||||.||+.++++|++.| |+|||||.++.. ..|.++.++..+|++||+ +++.++ .. +++.+...
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~--D~lii~i~s~~~--~~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~~ 76 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEV--DELIIGIGSAQE--SHTLENPFTAGERILMITQSLKEVGDLTYYIIPIEDIE 76 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCCC--CCCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 47899999999999999999999997 899999998865 334566778899999995 678774 31 22222112
Q ss_pred hHHHHhhc------CCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEcc---cCCCCChHHHHHHHHHh
Q 020938 98 TQEFLDKH------QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETK---RTDGISTSDIIMRIVKD 158 (319)
Q Consensus 98 t~e~L~~~------kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~~---rT~giSTTdII~RIl~~ 158 (319)
..+.+..+ ++|+|+.|. + -....+++.| .++++| |+ ++|+|.|+++|..+
T Consensus 77 ~~~~w~~~v~~~~p~~D~vf~~~-~---------~~~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~ 136 (165)
T TIGR01527 77 RNSIWVSYVESMTPPFDVVYSNN-P---------LVRRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG 136 (165)
T ss_pred HHHHHHHHHHHhCCCCCEEEECC-H---------HHHHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence 34455555 889999884 1 1345677888 677777 88 99999999999864
No 22
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.70 E-value=3e-17 Score=135.48 Aligned_cols=126 Identities=27% Similarity=0.283 Sum_probs=90.0
Q ss_pred EEcCccCcCChHHHHHHHHHhhhCCCCe-EEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcc--------------
Q 020938 24 YADGIYDLFHFGHARSLEQAKKSFPNTY-LLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDE-------------- 88 (319)
Q Consensus 24 y~~G~FDLfH~GHi~~LeqAKklf~gd~-LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDe-------------- 88 (319)
+++|+|||+|.||+.+|++|++.+ +. +||+|.++....+.+ ++++|.++|++||+.|..++.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~--~~~~vi~v~~~~~~~k~~-~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~ 77 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELF--DEDLVIVVPSDNSPHKDK-KPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKK 77 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHS--SESEEEEEEEEHHCHSTT-SSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHH
T ss_pred CeeeEcCcccHHHHHHHHHHHHhc--cccccccccccccccccc-cccCcHHHHHHHHHHHHhhcCCccccchhHHhHhh
Confidence 578999999999999999999997 43 688888887765532 489999999999999887777
Q ss_pred --------cccCCC-------CCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEcccCCCCChHHHH
Q 020938 89 --------VIPDAP-------WVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDII 152 (319)
Q Consensus 89 --------VVi~ap-------~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~~rT~giSTTdII 152 (319)
+++++. |....+++..+++.++.++.++..... ....+......+ .++....+..+|||.|+
T Consensus 78 ~~~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iSST~IR 155 (157)
T PF01467_consen 78 KYPDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDPIETI--SDDEILEKYPLGIIFILDPPRNEISSTEIR 155 (157)
T ss_dssp HSTSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTTHEEE--EHCHHHHHTTCEEEEEEEGGGTTSSHHHHH
T ss_pred hccccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCccchh--hhccccccccceeEEEecCCCCccCHHHHh
Confidence 666767 766788899999999998854332210 112233333333 45555677779999998
Q ss_pred HH
Q 020938 153 MR 154 (319)
Q Consensus 153 ~R 154 (319)
+|
T Consensus 156 ~~ 157 (157)
T PF01467_consen 156 ER 157 (157)
T ss_dssp HH
T ss_pred cC
Confidence 76
No 23
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.67 E-value=1.6e-16 Score=153.80 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=96.8
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc--cCCccccc---CCCCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC--KWVDEVIP---DAPWV 96 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~--k~VDeVVi---~ap~~ 96 (319)
+|++.||||+||.||+.+|++|+.++ ++|||||++|+++++.|.+| .|+++|+++|++. ++++.+.+ .+|+.
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~g--d~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~G 78 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETG--DEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYG 78 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcC--CEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCC
Confidence 69999999999999999999999985 89999999999998877778 9999999999994 67776443 56666
Q ss_pred chHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcC----eEEEccc---CCC--CChHHHHHHHHHh
Q 020938 97 VTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETKR---TDG--ISTSDIIMRIVKD 158 (319)
Q Consensus 97 ~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G----~~~~~~r---T~g--iSTTdII~RIl~~ 158 (319)
++ +...+||++|.+.+.+.+ +..+-+..++.| .++.++. .++ +|||.|++.-+..
T Consensus 79 pt---~~~~~~d~IVVS~ET~~~----~~~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~eid~ 142 (322)
T PRK01170 79 NT---LYEEDYEIIVVSPETYQR----ALKINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEIDG 142 (322)
T ss_pred CC---cccCCCCEEEEecccccc----HHHHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhccc
Confidence 43 234689999999865442 333445566677 3444443 344 6999998865443
No 24
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.67 E-value=2.6e-16 Score=129.56 Aligned_cols=128 Identities=20% Similarity=0.184 Sum_probs=92.2
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccC-Cccccc-CCC---CC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKW-VDEVIP-DAP---WV 96 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~-VDeVVi-~ap---~~ 96 (319)
+|++.|+||++|.||+.+|++|++++ ++.|+|+++++..... +..++++.++|+++++++.. ++.|++ ..+ +.
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~-~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~ 78 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEA-LDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKIL 78 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHc-CCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEEEecChhhcc
Confidence 47899999999999999999999997 5899999999865432 23579999999999999985 777765 211 11
Q ss_pred ch----HHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhc--C-eEEEcccC---CCCChHHHHHH
Q 020938 97 VT----QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAA--G-KFKETKRT---DGISTSDIIMR 154 (319)
Q Consensus 97 ~t----~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~--G-~~~~~~rT---~giSTTdII~R 154 (319)
.+ ...+..++++++++|.+...+....++ ..++.. + .++.++|. ..+|||.|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~---~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~ 143 (143)
T cd02039 79 LAVVFILKILLKVGPDKVVVGEDFAFGKNASYN---KDLKELFLDIEIVEVPRVRDGKKISSTLIREL 143 (143)
T ss_pred CHHHHHHHHHHHcCCcEEEECCccccCCchhhh---HHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence 11 245566899999999987654321111 223332 3 56666776 57999999753
No 25
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.63 E-value=2.7e-15 Score=130.12 Aligned_cols=126 Identities=20% Similarity=0.158 Sum_probs=94.8
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCchHH
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVTQE 100 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi~ap~~~t~e 100 (319)
+++++|+|||+|.||+.++++|++.+ |.|+|++++++ .| .++++.++|++|++. ++.++.+.+..-...|.+
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~--d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~ 73 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF--DEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEVDGFDGLLVD 73 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHH
Confidence 36899999999999999999999997 89999998764 24 478999999999996 788888887654457899
Q ss_pred HHhhcCCcEEEecCCcccccCCCcchHHHHH--HhcC----eEEEcccCC---CCChHHHHHHHHHh
Q 020938 101 FLDKHQIDFVAHDSLPYADASGAGKDVYEFV--KAAG----KFKETKRTD---GISTSDIIMRIVKD 158 (319)
Q Consensus 101 ~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~l--K~~G----~~~~~~rT~---giSTTdII~RIl~~ 158 (319)
+++.++.+++++|.+...++. .....+ .+.| ..+.+..++ .+|||.|++++...
T Consensus 74 ~l~~l~~~~~i~G~d~~~~~e----~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g 136 (153)
T cd02163 74 FARKHGANVIVRGLRAVSDFE----YEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFG 136 (153)
T ss_pred HHHHcCCCEEEECCcchhhHH----HHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcC
Confidence 999999999999976555441 122211 1111 122333444 59999999888754
No 26
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.60 E-value=8.3e-15 Score=129.64 Aligned_cols=145 Identities=19% Similarity=0.122 Sum_probs=98.6
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCC-CCeEEEEeccCcccc----ccC-CCCCCCHHHHHHHHHhccCCcccccCCC--
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFP-NTYLLVGCCNDETTH----KFK-GKTVMTEDERYESLRHCKWVDEVIPDAP-- 94 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~-gd~LIVGV~sDe~v~----~~K-GrPV~s~eER~e~V~a~k~VDeVVi~ap-- 94 (319)
|++-|+||++|.||..+|++|++++. ...++|.|+-|+... ..+ ..|+++.++|+++++++. ||.|++...
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~~~f~~ 80 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLVLPFDK 80 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEEeCCCH
Confidence 78999999999999999999999852 123556665554332 112 247999999999999998 999987421
Q ss_pred --C-CchHHHHhh----cCCcEEEecCCcccccCCCc--chHHHHHHhcC-eEEEccc----CCCCChHHHHHHHHHhhH
Q 020938 95 --W-VVTQEFLDK----HQIDFVAHDSLPYADASGAG--KDVYEFVKAAG-KFKETKR----TDGISTSDIIMRIVKDYN 160 (319)
Q Consensus 95 --~-~~t~e~L~~----~kpD~VvhG~d~y~d~~~~~--~D~y~~lK~~G-~~~~~~r----T~giSTTdII~RIl~~yd 160 (319)
. ....+|++. .+|+++|.|.|+.......+ +.+.+.+++.| .++.+++ +..+|||.|++.|.+.-=
T Consensus 81 ~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G~i 160 (180)
T cd02064 81 EFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEGDV 160 (180)
T ss_pred HHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhCCH
Confidence 1 123445544 37999999998765432222 23445566666 5667775 478999999888866543
Q ss_pred HHHHHHhh
Q 020938 161 QYVMRNLD 168 (319)
Q Consensus 161 ~y~~Rnl~ 168 (319)
.-+.+-|-
T Consensus 161 ~~an~lLg 168 (180)
T cd02064 161 ELANELLG 168 (180)
T ss_pred HHHHHHcC
Confidence 33333333
No 27
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.58 E-value=5.1e-15 Score=109.39 Aligned_cols=65 Identities=43% Similarity=0.676 Sum_probs=58.9
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcc
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDE 88 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDe 88 (319)
++++.|+|||+|.||+.+|++|++++ +.++|+|.+|+.....|..|+++.++|.++++.|.+++.
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~--~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 65 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELF--DELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVDE 65 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECchHhccccCCCCCCCHHHHHHHHHHhccccC
Confidence 48999999999999999999999997 489999999988877765699999999999999998874
No 28
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.57 E-value=3e-14 Score=123.65 Aligned_cols=126 Identities=14% Similarity=0.107 Sum_probs=87.6
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhcc-CCcccccCCCCCchHH
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCK-WVDEVIPDAPWVVTQE 100 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k-~VDeVVi~ap~~~t~e 100 (319)
+++++|+|||+|.||+.++++|++.| |.|+|+++.+ ..| .+..+.++|++||+.+- .-+.+.+..--..|.+
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~--d~v~~~~~~~----p~k-~~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~d 73 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF--DEVIVAVAKN----PSK-KPLFSLEERVELIKDATKHLPNVRVDVFDGLLVD 73 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC--CEEEEEEcCC----CCC-CCCcCHHHHHHHHHHHHhhCCCeEEcCccchHHH
Confidence 47899999999999999999999997 8999999754 223 37889999999999653 3333333222246889
Q ss_pred HHhhcCCcEEEecCCcccccCCCcchHHHHHH---h--cC-eEEEcccCC---CCChHHHHHHHHHh
Q 020938 101 FLDKHQIDFVAHDSLPYADASGAGKDVYEFVK---A--AG-KFKETKRTD---GISTSDIIMRIVKD 158 (319)
Q Consensus 101 ~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK---~--~G-~~~~~~rT~---giSTTdII~RIl~~ 158 (319)
.++.+++++++.|.+.+.++. .+...+. . .+ ..+.+..++ .+|||.|++++...
T Consensus 74 t~~~l~~~~~i~G~~~~~~~~----~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g 136 (155)
T TIGR01510 74 YAKELGATFIVRGLRAATDFE----YELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFG 136 (155)
T ss_pred HHHHcCCCEEEecCcchhhHH----HHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcC
Confidence 999999999999976555442 1111111 0 01 112332343 79999999888654
No 29
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.55 E-value=3.7e-14 Score=124.41 Aligned_cols=119 Identities=17% Similarity=0.200 Sum_probs=85.5
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCc----ccc--cCCCC
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVD----EVI--PDAPW 95 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VD----eVV--i~ap~ 95 (319)
+++.|+|||||.||+.++++|++.| |.|+|+|.++...+ +..+.++.++|++|++ +++.+| .|. +...+
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~~--d~l~v~v~s~~~~~--~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEEV--DELIIGIGSAQESH--TLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEecCCCCCC--CCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCCC
Confidence 6899999999999999999999998 89999998875543 2345688999999999 677775 333 22112
Q ss_pred CchHHHHhhc------CCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEcccC--CCCChHHHHHHHH
Q 020938 96 VVTQEFLDKH------QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRT--DGISTSDIIMRIV 156 (319)
Q Consensus 96 ~~t~e~L~~~------kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~~rT--~giSTTdII~RIl 156 (319)
.. .+.+.++ .+|+++.|..++ -+.+...| .++.+|++ .++|+|.|++.|.
T Consensus 78 ~~-~~~w~~~v~~~vp~~div~~g~~~~----------~~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~ 136 (163)
T cd02166 78 ER-NSLWVSYVESLTPPFDVVYSGNPLV----------ARLFKEAGYEVRRPPMFNREEYSGTEIRRLML 136 (163)
T ss_pred Cc-hHHHHHHHHHHCCCCCEEEECchHH----------HHhhhhcCCeEecCCcccCCCCCHHHHHHHHH
Confidence 22 2333333 679888875322 12455677 45577874 4899999988875
No 30
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.51 E-value=3e-13 Score=129.99 Aligned_cols=148 Identities=20% Similarity=0.121 Sum_probs=99.5
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeE---EEEeccCccccc----cC-CCCCCCHHHHHHHHHhccCCcccccCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYL---LVGCCNDETTHK----FK-GKTVMTEDERYESLRHCKWVDEVIPDA 93 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~L---IVGV~sDe~v~~----~K-GrPV~s~eER~e~V~a~k~VDeVVi~a 93 (319)
.|++-|+||.+|.||.++|++|++++ +.+ .|.++-|+.... .+ .+++++.+||+.++++|. ||.+++-.
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a--~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g-VD~~~~~~ 91 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIA--RERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG-VDYVLVLP 91 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHH--HhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC-CCEEEEec
Confidence 69999999999999999999999985 333 345555653321 12 257999999999999998 99998732
Q ss_pred C----CC-chHHHHhh-----cCCcEEEecCCcccccCCCc--chHHHHHHhcC-eEEEccc----CCCCChHHHHHHHH
Q 020938 94 P----WV-VTQEFLDK-----HQIDFVAHDSLPYADASGAG--KDVYEFVKAAG-KFKETKR----TDGISTSDIIMRIV 156 (319)
Q Consensus 94 p----~~-~t~e~L~~-----~kpD~VvhG~d~y~d~~~~~--~D~y~~lK~~G-~~~~~~r----T~giSTTdII~RIl 156 (319)
. .. ...+|+++ ++|+.+|+|.|+.......| +.+-+..++.| .+..++. ...+|||.|++.|.
T Consensus 92 F~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I~ 171 (305)
T PRK05627 92 FDEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQALA 171 (305)
T ss_pred CCHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHHH
Confidence 1 11 23456654 89999999998754322222 22333444455 5555543 47899999988886
Q ss_pred HhhHHHHHHHhhcCCc
Q 020938 157 KDYNQYVMRNLDRGYS 172 (319)
Q Consensus 157 ~~yd~y~~Rnl~rG~~ 172 (319)
.--=.-+.+-|-|-|+
T Consensus 172 ~G~i~~A~~lLg~~y~ 187 (305)
T PRK05627 172 EGDLELANKLLGRPYS 187 (305)
T ss_pred cCCHHHHHhhhcCCCc
Confidence 6543344444444443
No 31
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.50 E-value=6.9e-14 Score=123.35 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=77.9
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCch
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVT 98 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi~ap~~~t 98 (319)
|++++++|+|||+|.||++++++|.++| |.|||||...+. | +|.++.+||+++++. .+..+.|-+....++.
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F--d~viVaV~~np~----K-~plFsleER~~l~~~~~~~l~nV~V~~f~~Ll 74 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF--DEVIVAVAINPS----K-KPLFSLEERVELIREATKHLPNVEVVGFSGLL 74 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc--cEEEEEEEeCCC----c-CCCcCHHHHHHHHHHHhcCCCceEEEecccHH
Confidence 6789999999999999999999999999 899999987743 4 799999999999995 4566777665555688
Q ss_pred HHHHhhcCCcEEEecCCc
Q 020938 99 QEFLDKHQIDFVAHDSLP 116 (319)
Q Consensus 99 ~e~L~~~kpD~VvhG~d~ 116 (319)
.++.+++++.++++|.-.
T Consensus 75 vd~ak~~~a~~ivRGLR~ 92 (159)
T COG0669 75 VDYAKKLGATVLVRGLRA 92 (159)
T ss_pred HHHHHHcCCCEEEEeccc
Confidence 999999999999999853
No 32
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.47 E-value=3.3e-13 Score=116.95 Aligned_cols=90 Identities=22% Similarity=0.209 Sum_probs=74.2
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCcccccCC-CCCc
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIPDA-PWVV 97 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDeVVi~a-p~~~ 97 (319)
|++++++|+|||+|.||+.++++|.++| |.|+|+|+.++ .| .+.++.++|+++++ +++....|.+.. ..++
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~--D~v~v~v~~np----~K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l 73 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLF--DKVYVVVSINP----DK-SNASDLDSRFKNVKNKLKDFKNVEVLINENKL 73 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhC--CEEEEEeccCC----CC-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCc
Confidence 4689999999999999999999999998 89999998773 24 37899999999997 456555555432 2367
Q ss_pred hHHHHhhcCCcEEEecCCc
Q 020938 98 TQEFLDKHQIDFVAHDSLP 116 (319)
Q Consensus 98 t~e~L~~~kpD~VvhG~d~ 116 (319)
+.+++++++++++++|...
T Consensus 74 ~v~~~~~~~a~~ivrGlR~ 92 (140)
T PRK13964 74 TAEIAKKLGANFLIRSARN 92 (140)
T ss_pred HHHHHHHCCCeEEEEecCC
Confidence 8899999999999999853
No 33
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.40 E-value=9.9e-13 Score=113.94 Aligned_cols=124 Identities=19% Similarity=0.204 Sum_probs=81.9
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC-CCCCCHHHHHHHHHhc-cCC----c--ccccCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLRHC-KWV----D--EVIPDA 93 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG-rPV~s~eER~e~V~a~-k~V----D--eVVi~a 93 (319)
+|+++|+||++|.||..+|.+|+.++. +.|+|||++|+.....+. .++++.++|+++|+.+ .-. . -+-+.+
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~-d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d 79 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAG-EKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDD 79 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Confidence 388999999999999999999999973 789999999985433222 2589999999999965 221 1 222467
Q ss_pred CCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcC----eEEEcc------cCCCCChHHHHH
Q 020938 94 PWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETK------RTDGISTSDIIM 153 (319)
Q Consensus 94 p~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G----~~~~~~------rT~giSTTdII~ 153 (319)
|++++.. .-.+|++|.....+.. +..+-+.=++.| .++.++ -...+|||.|++
T Consensus 80 ~~Gpt~~---~~~~d~lVVS~ET~~~----~~~iN~~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~ 142 (143)
T cd02164 80 PYGPTGT---DPDLEAIVVSPETYPG----ALKINRKREENGLSPLEIVVVPLVKADEDGEKISSTRIRR 142 (143)
T ss_pred CCCCccc---CCCCCEEEEcHHHhhh----HHHHHHHHHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence 7765432 2468888876543321 111212223345 233333 235689999864
No 34
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.31 E-value=6.3e-12 Score=112.60 Aligned_cols=123 Identities=16% Similarity=0.104 Sum_probs=79.7
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc-cC--Cc--cccc-C----
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-KW--VD--EVIP-D---- 92 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~-k~--VD--eVVi-~---- 92 (319)
+++.|+|||||.||+.++++|.+.| ++|||+|.+....+ .+ ++.++.++|++|++.+ .. +| .|.+ +
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~--~~vii~i~s~~~~~-~~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKA--KKVIILIGSARTAR-NI-KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDH 77 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CeEEEEeCCCCCCC-CC-CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCC
Confidence 5789999999999999999999998 59999998764422 22 3678999999999975 32 11 2321 1
Q ss_pred ----CCCCc-----hHHHHhhcCCcEEEecCCcccccCCCcchHHH-HHHhcCeEEEcccCCCCChHHHHHHHHH
Q 020938 93 ----APWVV-----TQEFLDKHQIDFVAHDSLPYADASGAGKDVYE-FVKAAGKFKETKRTDGISTSDIIMRIVK 157 (319)
Q Consensus 93 ----ap~~~-----t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~-~lK~~G~~~~~~rT~giSTTdII~RIl~ 157 (319)
..|.. .+.+ -..++++++.|.+...+ ..|. .+.+.|.+ .++....+|+|.|+++|..
T Consensus 78 ~~~~~~W~~~v~~~v~~~-~~~~~~i~~~g~~kd~~------~~~~~lfpe~~~~-~~p~~~~iSsT~IR~~i~~ 144 (181)
T cd02168 78 LYSDNLWLAEVQQQVLEI-AGGSASVGLVGHRKDAS------SYYLRSFPQWDYL-EVPNYPDLNATDIRRAYFE 144 (181)
T ss_pred CCChHHHHHHHHHhChHh-hCCCCcEEEeCCccCCC------ccceeecCCcCee-cCccccccCHHHHHHHHHh
Confidence 11320 1111 12366888888543211 1111 22233433 6677778999999988865
No 35
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.31 E-value=1.3e-11 Score=119.66 Aligned_cols=130 Identities=16% Similarity=0.158 Sum_probs=87.7
Q ss_pred CCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc-cCCc--cccc-C-
Q 020938 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-KWVD--EVIP-D- 92 (319)
Q Consensus 18 ~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~-k~VD--eVVi-~- 92 (319)
.++.++++.|+|||||.||+.++++|++.| |.|||+|+|....+.. +..++.++|++||+.+ +.++ .|.+ +
T Consensus 4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~--d~l~v~i~s~~~~~~~--~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi 79 (340)
T PRK05379 4 RRYDYLVFIGRFQPFHNGHLAVIREALSRA--KKVIVLIGSADLARSI--KNPFSFEERAQMIRAALAGIDLARVTIRPL 79 (340)
T ss_pred ccceEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEEccCCCCCcC--CCCCCHHHHHHHHHHHhhcCCCceEEEEEC
Confidence 456789999999999999999999999998 8999999875433322 3458999999999965 5443 2221 1
Q ss_pred -------CCCCch-HHHHh---hcCCcEEEecCCcccccCCCcchHHH-HHHhcCeEEEcccCCCCChHHHHHHHHHh
Q 020938 93 -------APWVVT-QEFLD---KHQIDFVAHDSLPYADASGAGKDVYE-FVKAAGKFKETKRTDGISTSDIIMRIVKD 158 (319)
Q Consensus 93 -------ap~~~t-~e~L~---~~kpD~VvhG~d~y~d~~~~~~D~y~-~lK~~G~~~~~~rT~giSTTdII~RIl~~ 158 (319)
..|... ...+. ..++|+++.|.+... +..|- .+.+.|.+ .++.++++|+|.|+++|+..
T Consensus 80 ~d~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~~------~~~~~~~f~~~~~~-~~~~~~~~s~T~iR~~~~~~ 150 (340)
T PRK05379 80 RDSLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKDA------SSYYLRSFPQWELV-DVPNTEDLSATEIRDAYFEG 150 (340)
T ss_pred CCCCcChHHHHHHHHHHHHhccCCCCcEEEECCcCCC------ChHHHHhccccccc-cCCcccccCccHHHHHHHcC
Confidence 113211 11111 157899999964311 22332 33455544 56778899999999988753
No 36
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.30 E-value=2.2e-11 Score=108.47 Aligned_cols=122 Identities=19% Similarity=0.293 Sum_probs=80.9
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc-cC--C--cccc-cCCC-
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-KW--V--DEVI-PDAP- 94 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~-k~--V--DeVV-i~ap- 94 (319)
++++.|+|||||.||+.++++|.+.| |.|+|+|++....+ +.++.++.++|++|++.. .. + +.+. ++-+
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~--d~v~v~i~s~~~~~--~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D 77 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEV--DELIIGIGSAQESH--TLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPD 77 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhC--CEEEEEecCCCCCC--CCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCC
Confidence 58899999999999999999999987 89999997643211 224568999999999953 32 2 1222 2212
Q ss_pred CCchHHHHhhc-----CCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEcc--cCCCCChHHHHHHHHH
Q 020938 95 WVVTQEFLDKH-----QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETK--RTDGISTSDIIMRIVK 157 (319)
Q Consensus 95 ~~~t~e~L~~~-----kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~~--rT~giSTTdII~RIl~ 157 (319)
......+.... ++|+|+.|.. | ........| .++.+| +..++|+|.|+++|..
T Consensus 78 ~~~~~~w~~~v~~~~~~~d~v~~~~~-y---------~~~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~ 138 (174)
T PRK01153 78 IEFNSIWVSHVESYTPPFDVVYTGNP-L---------VARLFREAGYEVRQPPMFNREEYSGTEIRRRMIE 138 (174)
T ss_pred cchHHHHHHHHHHhCCCCCEEEECCh-H---------HHHhchhhCCeEecCCccccCCCCHHHHHHHHHc
Confidence 11222222222 6688888752 2 223345677 455555 5678999999999864
No 37
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.26 E-value=2.5e-11 Score=106.95 Aligned_cols=127 Identities=24% Similarity=0.259 Sum_probs=89.5
Q ss_pred CCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc----cCC-c-cccc
Q 020938 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC----KWV-D-EVIP 91 (319)
Q Consensus 18 ~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~----k~V-D-eVVi 91 (319)
.++..|.++|+||.||.||..+|..|..++ +.+++||+||+.++++|..++.|++.|++-|... +.= . -|-+
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G--~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i 80 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIG--DRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPI 80 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHhC--CeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEe
Confidence 356679999999999999999999999995 6899999999999988878999999999987753 211 1 2334
Q ss_pred CCCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcC----eEEEccc-----CCCCChHHHHH
Q 020938 92 DAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETKR-----TDGISTSDIIM 153 (319)
Q Consensus 92 ~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G----~~~~~~r-----T~giSTTdII~ 153 (319)
.+|++.|.+ .-.+|++|.....|..+ ..+-+.=.+.| .++.++. .-.+|||.|++
T Consensus 81 ~Dp~G~t~~---~~~~e~iVVS~ET~~~A----l~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrr 144 (158)
T COG1019 81 DDPYGPTVE---DPDFEAIVVSPETYPGA----LKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRR 144 (158)
T ss_pred cCCCCCCCC---cCceeEEEEccccchhH----HHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhh
Confidence 788876544 23578888765443321 11222223456 3444442 34789998864
No 38
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.26 E-value=5.6e-11 Score=106.87 Aligned_cols=132 Identities=16% Similarity=0.193 Sum_probs=88.8
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccC-CCCCCCHHHHHHHHHhc----cC---Cccccc
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFK-GKTVMTEDERYESLRHC----KW---VDEVIP 91 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~K-GrPV~s~eER~e~V~a~----k~---VDeVVi 91 (319)
...|++.|+||.+|.||..+|.+|..++ .+.++||+++|+.....+ ...+.|.++|.+.|... .+ +.-+-+
T Consensus 19 ~~~Vv~gGtFDgLH~GHq~LL~~A~~~a-~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~i~~i 97 (177)
T PLN02388 19 YGAVVLGGTFDRLHDGHRLFLKAAAELA-RDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQAEPI 97 (177)
T ss_pred CCeEEEEecCCccCHHHHHHHHHHHHhh-hcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEEEEEe
Confidence 4469999999999999999999999996 358999999999764422 13599999999998864 11 222334
Q ss_pred CCCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcC----eEEEcc---c---CCCCChHHHHHHHHHhh
Q 020938 92 DAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETK---R---TDGISTSDIIMRIVKDY 159 (319)
Q Consensus 92 ~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G----~~~~~~---r---T~giSTTdII~RIl~~y 159 (319)
.+|++++.. .-.+|++|.+...+.. +..+=+.=++.| .++.++ . ...+|||.|++|+.+..
T Consensus 98 ~D~~Gpt~~---~~~~d~LVVS~ET~~g----~~~IN~~R~e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~~~~ 168 (177)
T PLN02388 98 IDPYGPSIV---DENLEAIVVSKETLPG----GLSVNKKRAERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEAEKA 168 (177)
T ss_pred cCCCCCccc---CCCCCEEEEcHhHhhh----HHHHHHHHHHCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHHHHH
Confidence 778776432 3468999987643322 111111112334 233222 1 35899999999887654
No 39
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.25 E-value=1e-10 Score=105.15 Aligned_cols=98 Identities=15% Similarity=0.009 Sum_probs=68.6
Q ss_pred CCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC-CCCCCHHHHHHHHH-hccCCcccccC---
Q 020938 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLR-HCKWVDEVIPD--- 92 (319)
Q Consensus 18 ~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG-rPV~s~eER~e~V~-a~k~VDeVVi~--- 92 (319)
.++++++++|+|||+|.||+.++++|++.++-+.+++.++..... |. +...+.++|++|++ ++...+.+.+.
T Consensus 2 ~~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~~---k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E 78 (203)
T PRK00071 2 MMKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPH---KPQKPLAPLEHRLAMLELAIADNPRFSVSDIE 78 (203)
T ss_pred CCcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCC---CCCCCCCCHHHHHHHHHHHhcCCCceEEeHHH
Confidence 356789999999999999999999999987557888887766432 33 36889999999998 45655544431
Q ss_pred ---CCCCchHHHHh---hcCCc---EEEecCCccc
Q 020938 93 ---APWVVTQEFLD---KHQID---FVAHDSLPYA 118 (319)
Q Consensus 93 ---ap~~~t~e~L~---~~kpD---~VvhG~d~y~ 118 (319)
.....|.+.|+ +.-|+ +++.|.|...
T Consensus 79 ~~~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~ 113 (203)
T PRK00071 79 LERPGPSYTIDTLRELRARYPDVELVFIIGADALA 113 (203)
T ss_pred HhCCCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhh
Confidence 12233445544 33455 6788886433
No 40
>PRK07143 hypothetical protein; Provisional
Probab=99.24 E-value=2.2e-10 Score=109.23 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=102.7
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCcccc-ccCCCCCCCHHHHHHHHHhccCCcccccCCC----C
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTH-KFKGKTVMTEDERYESLRHCKWVDEVIPDAP----W 95 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~-~~KGrPV~s~eER~e~V~a~k~VDeVVi~ap----~ 95 (319)
..|++-|.||.+|.||..+|++|++.+ ..++|.+.+++..- ..+..++++.++|++.+++|. ||.+++-.. .
T Consensus 16 ~~vvaiG~FDGvH~GHq~Ll~~a~~~~--~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~G-vd~~~~~~F~~~~a 92 (279)
T PRK07143 16 KPTFVLGGFESFHLGHLELFKKAKESN--DEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANLG-FKNIILLDFNEELQ 92 (279)
T ss_pred CeEEEEccCCcCCHHHHHHHHHHHHCC--CcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHCC-CCEEEEeCCCHHHh
Confidence 358999999999999999999999974 77888887765432 112235999999999999985 687765311 1
Q ss_pred C-chHHHHhh---cCCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEcc----cCCCCChHHHHHHHHHhhHHHHHHH
Q 020938 96 V-VTQEFLDK---HQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETK----RTDGISTSDIIMRIVKDYNQYVMRN 166 (319)
Q Consensus 96 ~-~t~e~L~~---~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~~----rT~giSTTdII~RIl~~yd~y~~Rn 166 (319)
. ...+|++. +++..||.|.|........| + .+.|++.+ .+..++ ....||||.|++-|.+--=.-..+-
T Consensus 93 ~ls~e~Fi~~ll~l~~~~iVvG~Df~FG~~r~G-~-~~~L~~~~~~v~~v~~~~~~g~~ISST~IR~~l~~G~i~~A~~l 170 (279)
T PRK07143 93 NLSGNDFIEKLTKNQVSFFVVGKDFRFGKNASW-N-ADDLKEYFPNVHIVEILKINQQKISTSLLKEFIEFGDIELLNSL 170 (279)
T ss_pred CCCHHHHHHHHHhcCCCEEEECCCcccCCCCCC-C-HHHHHHhCCcEEEeCCEEcCCcEEcHHHHHHHHHcCCHHHHHHH
Confidence 1 23556655 79999999998765432222 2 45677776 555554 2457999999887766544445555
Q ss_pred hhcCCcc
Q 020938 167 LDRGYSR 173 (319)
Q Consensus 167 l~rG~~~ 173 (319)
|-|-|+-
T Consensus 171 LGr~y~i 177 (279)
T PRK07143 171 LLYNYSI 177 (279)
T ss_pred cCCCcEE
Confidence 5555544
No 41
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.24 E-value=1e-10 Score=104.09 Aligned_cols=94 Identities=16% Similarity=0.086 Sum_probs=65.0
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc-cCCcccccC------CC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-KWVDEVIPD------AP 94 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~-k~VDeVVi~------ap 94 (319)
+++++|+|||+|.||+.+++.|++.++.+.|+|.++.+.. .|+.+..+.++|++|++.+ .....+.+. ..
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~ 77 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDG 77 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCC
Confidence 3688999999999999999999999866899998876643 3446788999999999954 443334331 11
Q ss_pred CCchHHHHh---hcCC--c-EEEecCCccc
Q 020938 95 WVVTQEFLD---KHQI--D-FVAHDSLPYA 118 (319)
Q Consensus 95 ~~~t~e~L~---~~kp--D-~VvhG~d~y~ 118 (319)
...|.+.|+ +.-| . +++.|.|...
T Consensus 78 ~~~t~~tl~~l~~~~p~~~~~~liG~D~l~ 107 (192)
T cd02165 78 PSYTIDTLEELRERYPNAELYFIIGSDNLI 107 (192)
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEcHHHhh
Confidence 233444443 3334 3 5667876544
No 42
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.22 E-value=1.2e-10 Score=101.98 Aligned_cols=127 Identities=18% Similarity=0.242 Sum_probs=82.9
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCccccc------CCC-
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP------DAP- 94 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi------~ap- 94 (319)
+++.|+|||||.||+.++++|++.+ |.|+|+|++....+ ..++.++.++|++||+. ++.-+.+.+ +.|
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~--d~v~vi~~~~~~~~--~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~ 77 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQV--DELLIIVGSDDTRD--DARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPE 77 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCccc--ccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCC
Confidence 6789999999999999999999997 89999999876322 12568899999999995 454233322 222
Q ss_pred ----CCchH----HHHhhc---CCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEc--cc-CCCCChHHHHHHHHHhh
Q 020938 95 ----WVVTQ----EFLDKH---QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKET--KR-TDGISTSDIIMRIVKDY 159 (319)
Q Consensus 95 ----~~~t~----e~L~~~---kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~--~r-T~giSTTdII~RIl~~y 159 (319)
|..-. ..+.+. ++|+|+.|.. +.. ..+-.....| .+..+ .| ...+|+|.|++-..+.|
T Consensus 78 ~~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~-~~~------~~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~~~w 150 (158)
T cd02167 78 YPNGWDIWSNRVKTLIAENTRCRPDIVFTAEE-YEA------AFELVLAYLGAQVVLVDPDRTDISVSATQIRENPFRYW 150 (158)
T ss_pred CchhHHHHHHHHHHHHhhhcCCCCCEEEEccC-cch------hhhhHhhcCCCeEEEeccccccCCcCHHHHHhCHHHHH
Confidence 31111 222221 6788888753 321 1211123445 44443 23 46899999998877776
Q ss_pred H
Q 020938 160 N 160 (319)
Q Consensus 160 d 160 (319)
+
T Consensus 151 ~ 151 (158)
T cd02167 151 Y 151 (158)
T ss_pred H
Confidence 4
No 43
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.15 E-value=4.2e-10 Score=99.90 Aligned_cols=129 Identities=12% Similarity=0.083 Sum_probs=79.8
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc-cCC--cccccC----
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-KWV--DEVIPD---- 92 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~-k~V--DeVVi~---- 92 (319)
+++++++|+|||+|.||+.++++|+ .+ |.|+|..+... ..+ ++..+.++|++|++.+ ... ..+.+.
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~~-~~--d~v~~vP~~~~---~~~-k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~ 74 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESLS-HF--DLVLLVPSIAH---AWG-KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQ 74 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHhh-cC--CEEEEEECCCC---ccc-CCCCCHHHHHHHHHHHHhccCCCceEEehHHh
Confidence 3578999999999999999999975 33 78888876531 112 3678999999999843 332 233321
Q ss_pred -----CCCCchHHHHhhcC---Cc---EEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHH
Q 020938 93 -----APWVVTQEFLDKHQ---ID---FVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVK 157 (319)
Q Consensus 93 -----ap~~~t~e~L~~~k---pD---~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~ 157 (319)
.....|.+.|+.++ |+ +++.|.|...+.. ...+ ++.+-+.-.++..++...+|||.|++++..
T Consensus 75 ~~~~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~-~W~~-~~~i~~~~~l~~~~~~~~ISST~IR~~l~~ 148 (174)
T PRK08887 75 ELYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFA-KFYK-ADEITQRWTVMACPEKVPIRSTDIRNALQN 148 (174)
T ss_pred hhccCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHH-HhCC-HHHHHhhCeEEEeCCCCCcCHHHHHHHHHc
Confidence 11122444444332 33 4566887544321 0111 233434444556677778999999988853
No 44
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.12 E-value=6.2e-11 Score=95.97 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=49.8
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC 83 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~ 83 (319)
+++.|+||++|.||+.++++|++++ +.+||++..++.... + .++.+.++|.++++++
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~--d~~i~~i~~~~~~~~-~-~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIA--DQCVVRIDDNPPVKV-W-QDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhC--CcEEEEEcCCCcccc-c-CChHHHHHHHHHHHHH
Confidence 7889999999999999999999997 789999998865432 2 3689999999999987
No 45
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.11 E-value=1.2e-09 Score=102.30 Aligned_cols=69 Identities=20% Similarity=0.186 Sum_probs=54.6
Q ss_pred CCCCCCCCCe-EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hcc
Q 020938 12 TDTAPSDRPV-RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCK 84 (319)
Q Consensus 12 ~~~~~~~r~~-rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k 84 (319)
...+|..+|+ +++++|+|||+|.||+.+.++|.+.++-|.+++..+.+.. .| .+..+.+.|++||+ ++.
T Consensus 13 ~~~~~~~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp---~K-~~~~~~~~Rl~M~~lAi~ 83 (243)
T PRK06973 13 EPAPPLARPRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPW---QK-ADVSAAEHRLAMTRAAAA 83 (243)
T ss_pred CCCCCCCCCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCC---CC-CCCCCHHHHHHHHHHHHH
Confidence 4455555555 6799999999999999999999988766888888877643 23 56779999999998 444
No 46
>PRK13671 hypothetical protein; Provisional
Probab=99.09 E-value=7.4e-10 Score=106.74 Aligned_cols=86 Identities=27% Similarity=0.341 Sum_probs=69.9
Q ss_pred cCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCC-CCCHHHHHHHHHhccCCccccc-CCCCCc------
Q 020938 26 DGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKT-VMTEDERYESLRHCKWVDEVIP-DAPWVV------ 97 (319)
Q Consensus 26 ~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrP-V~s~eER~e~V~a~k~VDeVVi-~ap~~~------ 97 (319)
--+|||||.||+.++++|++.++.|.+||..+.+. ++ ||.| +++..+|++|+..| .||-||. +.+|.+
T Consensus 6 IaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~-~q--rg~pa~~~~~~R~~ma~~~-G~DLViELP~~~a~~sAe~F 81 (298)
T PRK13671 6 IAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY-TQ--RGEIAVASFEKRKKIALKY-GVDKVIKLPFEYATQAAHIF 81 (298)
T ss_pred EeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC-CC--CCCCCCCCHHHHHHHHHHc-CCCEEEeccHHHHhhchHHH
Confidence 35899999999999999999887788888766665 33 4655 66999999999998 7999984 444433
Q ss_pred ---hHHHHhhcCCcEEEecCC
Q 020938 98 ---TQEFLDKHQIDFVAHDSL 115 (319)
Q Consensus 98 ---t~e~L~~~kpD~VvhG~d 115 (319)
...+|..+++|.++.|..
T Consensus 82 A~gaV~lL~~lgvd~l~FGsE 102 (298)
T PRK13671 82 AKGAIKKLNKEKIDKLIFGSE 102 (298)
T ss_pred HHHHHHHHHHcCCCEEEECCC
Confidence 457888999999999985
No 47
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.08 E-value=1.2e-09 Score=105.76 Aligned_cols=134 Identities=18% Similarity=0.127 Sum_probs=84.8
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCC-CCCCHHHHHHHHH-hccCCccccc------
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGK-TVMTEDERYESLR-HCKWVDEVIP------ 91 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGr-PV~s~eER~e~V~-a~k~VDeVVi------ 91 (319)
|++++++|+|||+|.||+.++++|.+.++-|.|++..+.++- .|.. +..+.+.|++||+ ++...+.+.+
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p---~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~ 77 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINP---FKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIK 77 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence 568899999999999999999999987655888887766542 3433 4555699999997 4454333332
Q ss_pred -C-CCCC-chHHHHhhcCCc---EEEecCCcccccCCCcchHHHHHHhcCeEEEcccC--------------------CC
Q 020938 92 -D-APWV-VTQEFLDKHQID---FVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRT--------------------DG 145 (319)
Q Consensus 92 -~-ap~~-~t~e~L~~~kpD---~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT--------------------~g 145 (319)
+ ..++ .|...+++.-|+ +++.|.|...... ...+ ++.+-+...|+.++|. ..
T Consensus 78 ~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~-~W~~-~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~ 155 (342)
T PRK07152 78 RQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFK-KWKN-IEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLN 155 (342)
T ss_pred CCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcc-cccC-HHHHHHhCCEEEEECCCCCcccccccCcEEEecCCccc
Confidence 1 1222 233444443454 6788987554321 1122 3333344445555542 35
Q ss_pred CChHHHHHHHHHh
Q 020938 146 ISTSDIIMRIVKD 158 (319)
Q Consensus 146 iSTTdII~RIl~~ 158 (319)
+|||.|++++.+.
T Consensus 156 iSST~IR~~~~~~ 168 (342)
T PRK07152 156 ISSTKIRKGNLLG 168 (342)
T ss_pred cCHHHHHHHHHcC
Confidence 9999999998754
No 48
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.03 E-value=2.1e-09 Score=96.10 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=61.1
Q ss_pred EcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC-CCCCCHHHHHHHHH-hccCCcccccC--------CC
Q 020938 25 ADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLR-HCKWVDEVIPD--------AP 94 (319)
Q Consensus 25 ~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG-rPV~s~eER~e~V~-a~k~VDeVVi~--------ap 94 (319)
++|+|||+|.||+.++++|++.++-|.|+|..+.... .|. ....+.++|++|++ ++...+.+.+. ..
T Consensus 2 ~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~s 78 (193)
T TIGR00482 2 FGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPP---HKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGPS 78 (193)
T ss_pred ccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCCC
Confidence 5899999999999999999998755788877776643 232 34579999999998 56554444331 12
Q ss_pred CC-chHHHHhhcCCc---EEEecCCccc
Q 020938 95 WV-VTQEFLDKHQID---FVAHDSLPYA 118 (319)
Q Consensus 95 ~~-~t~e~L~~~kpD---~VvhG~d~y~ 118 (319)
++ .|...+++.-|+ +++.|.|...
T Consensus 79 yT~~tl~~l~~~~p~~~~~~iiG~D~l~ 106 (193)
T TIGR00482 79 YTIDTLKHLKKKYPDVELYFIIGADALR 106 (193)
T ss_pred CHHHHHHHHHHHCCCCeEEEEEcHHHhh
Confidence 22 133444443344 5677876443
No 49
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.03 E-value=3e-09 Score=97.03 Aligned_cols=135 Identities=17% Similarity=0.092 Sum_probs=88.9
Q ss_pred CCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC-CCCCCHHHHHHHHH-hccCCcc-----ccc
Q 020938 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLR-HCKWVDE-----VIP 91 (319)
Q Consensus 19 r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG-rPV~s~eER~e~V~-a~k~VDe-----VVi 91 (319)
.|++++++|+|||.|.||+.+.++|.+.++-|.|++..+..+. .|. .+.-+.+.|+.|++ +|+.+.. ..+
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p---~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~ 78 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPP---HKKKKELASAEHRLAMLELAIEDNPRFEVSDREI 78 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCC---CCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence 5789999999999999999999999998877776666555432 233 56999999999998 6665444 322
Q ss_pred ---CCCCC-chHHHHh-hcCCcE---EEecCCcccccCCCcchHHHHHHhcCeEEEcccCC-------------------
Q 020938 92 ---DAPWV-VTQEFLD-KHQIDF---VAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTD------------------- 144 (319)
Q Consensus 92 ---~ap~~-~t~e~L~-~~kpD~---VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~------------------- 144 (319)
+..++ -|.+.++ +++||. ++.|.|-...- ..-. -++.+-....|+.++|..
T Consensus 79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l-~~W~-~~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~ 156 (197)
T COG1057 79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASL-PKWY-DWDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLD 156 (197)
T ss_pred HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhh-hhhh-hHHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEcc
Confidence 12222 2344444 677873 67787643321 0011 134455666666665533
Q ss_pred ----CCChHHHHHHHHHh
Q 020938 145 ----GISTSDIIMRIVKD 158 (319)
Q Consensus 145 ----giSTTdII~RIl~~ 158 (319)
.+|||.|+.++...
T Consensus 157 ~~~~~ISSt~IR~~~~~~ 174 (197)
T COG1057 157 LPRLDISSTEIRERIRRG 174 (197)
T ss_pred CccccCchHHHHHHHhCC
Confidence 38888888887553
No 50
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.02 E-value=2.5e-09 Score=106.25 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=91.9
Q ss_pred CCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccc-----cccCCCCCCCHHHHHHHHHhc-cCCccccc
Q 020938 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETT-----HKFKGKTVMTEDERYESLRHC-KWVDEVIP 91 (319)
Q Consensus 18 ~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v-----~~~KGrPV~s~eER~e~V~a~-k~VDeVVi 91 (319)
...+++++.|+|||+|.||+.++++|.+++ +.|+|+|+++..- ...|-...++.++|+++|+.. +..+.|.+
T Consensus 50 ~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~--d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v 127 (399)
T PRK08099 50 QMKKIGVVFGKFYPLHTGHIYLIQRACSQV--DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKI 127 (399)
T ss_pred hcCcEEEEEEecCCCCHHHHHHHHHHHHHC--CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 344589999999999999999999999997 7888888876521 111124588999999999964 66444433
Q ss_pred ---------CCC-----CCc-hHHHHhh--cCCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEcc--c-CCCCChHH
Q 020938 92 ---------DAP-----WVV-TQEFLDK--HQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETK--R-TDGISTSD 150 (319)
Q Consensus 92 ---------~ap-----~~~-t~e~L~~--~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~~--r-T~giSTTd 150 (319)
+.| |.- ....+.. .++++++.|.... .+-| ++..| .++.++ | ...||.|.
T Consensus 128 ~~~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d-------~~~~--~~~~~~~~~~vd~~r~~~~iSaT~ 198 (399)
T PRK08099 128 HAFNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQD-------APQY--EEHLGIETVLVDPKRTFMNISGTQ 198 (399)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCC-------hHHH--HHhcCCceeeeccccccCCcCHHH
Confidence 122 110 1122222 2689888886321 1223 44445 454443 4 35799999
Q ss_pred HHHHHHHhhHHHHHHHhhcCCcc
Q 020938 151 IIMRIVKDYNQYVMRNLDRGYSR 173 (319)
Q Consensus 151 II~RIl~~yd~y~~Rnl~rG~~~ 173 (319)
|++.-.+.|+ |+.+-.++.+.+
T Consensus 199 IR~~p~~~w~-~i~~~vr~~~~~ 220 (399)
T PRK08099 199 IRENPFRYWE-YIPTEVRPFFVR 220 (399)
T ss_pred HhhCHHHHHH-hcCHHHhhCCCc
Confidence 9998888764 444444444433
No 51
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=98.95 E-value=4.1e-09 Score=101.83 Aligned_cols=65 Identities=18% Similarity=0.066 Sum_probs=53.3
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCcc
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDE 88 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDe 88 (319)
|+++++.|+|||+|.||+.++++|++++ |.|+|+|++... + .|.++.++.++|++||+ +|+....
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~--d~v~v~~~~~~~-~-~~~~~~~~~~~R~~~l~~~~~~~~~ 66 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKV--DELHIVVGSLFY-D-SKAKRPPPVQDRLRWLREIFKYQKN 66 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCc-C-ccCCCCCCHHHHHHHHHHHhccCCC
Confidence 4578999999999999999999999997 899999987321 1 13368899999999998 4566655
No 52
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.94 E-value=2.2e-09 Score=98.06 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=50.5
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC 83 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~ 83 (319)
..+++.|.|.|||.||+.+|++|.+.| ++|||||.|-...+.. +-.++..||..|++.+
T Consensus 5 d~~v~iGRFQPfH~GHl~~I~~al~~~--devII~IGSA~~s~t~--~NPFTa~ER~~MI~~a 63 (196)
T PRK13793 5 DYLVFIGRFQPFHLAHMQTIEIALQQS--RYVILALGSAQMERNI--KNPFLAIEREQMILSN 63 (196)
T ss_pred eEEEEEecCCCCcHHHHHHHHHHHHhC--CEEEEEEccCCCCCCC--CCCCCHHHHHHHHHHh
Confidence 468899999999999999999999998 7999999996543332 3479999999999965
No 53
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.93 E-value=1.5e-08 Score=97.42 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=84.7
Q ss_pred CCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCccccc-----
Q 020938 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP----- 91 (319)
Q Consensus 18 ~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi----- 91 (319)
...+++-+-|+|||+|.||+.++++|.+.| +.++|.|... ..+.+|.++|++|++. ++....+.+
T Consensus 112 ~~~~~~~~~~~FDPiH~GHl~ii~~a~~~~--d~~~V~i~~~-------~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~ 182 (297)
T cd02169 112 PGKKIAAIVMNANPFTLGHRYLVEKAAAEN--DWVHLFVVSE-------DKSLFSFADRFKLVKKGTKHLKNVTVHSGGD 182 (297)
T ss_pred CCCceEEEEecCCCCchHHHHHHHHHHhhC--CeEEEEEEcC-------CCCCCCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 334678888999999999999999999998 5666666542 2578999999999995 443222221
Q ss_pred ------CCC-CC--------------chHHHH----hhcCCcEEEecCCcccccCCCcchHH-HHHHhcC-eEEEcc---
Q 020938 92 ------DAP-WV--------------VTQEFL----DKHQIDFVAHDSLPYADASGAGKDVY-EFVKAAG-KFKETK--- 141 (319)
Q Consensus 92 ------~ap-~~--------------~t~e~L----~~~kpD~VvhG~d~y~d~~~~~~D~y-~~lK~~G-~~~~~~--- 141 (319)
..| |. ...+|+ +.+++..++.|.|........|+... ...++.| .+..++
T Consensus 183 l~v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~~~~~gf~v~~v~~~~ 262 (297)
T cd02169 183 YIISSATFPSYFIKEQDVVIKAQTALDARIFRKYIAPALNITKRYVGEEPFSRVTAIYNQTMQEELLSPAIEVIEIERKK 262 (297)
T ss_pred eeeccccChhhhcCChhHHHHHHhcCCHHHHHHHHHHHcCCcEEEEcCCCCCCCcchhHHHHHHhcccCCCEEEEecccc
Confidence 011 10 022444 45799999999987665433333211 1112234 344443
Q ss_pred -cCCCCChHHHHHHHHHh
Q 020938 142 -RTDGISTSDIIMRIVKD 158 (319)
Q Consensus 142 -rT~giSTTdII~RIl~~ 158 (319)
-...||||.|++-|.+-
T Consensus 263 ~~g~~ISST~IR~~l~~G 280 (297)
T cd02169 263 YDGQPISASTVRQLLKEG 280 (297)
T ss_pred cCCcEEcHHHHHHHHHcC
Confidence 24579999998777543
No 54
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.89 E-value=2e-08 Score=90.22 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=78.7
Q ss_pred CccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCccccc-----------CCC
Q 020938 27 GIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP-----------DAP 94 (319)
Q Consensus 27 G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi-----------~ap 94 (319)
-.|||+|.||+.++++|.+.| +.++|+|.+. + .+.++.++|++|++. ++....|.+ ..|
T Consensus 6 ~~~DPiH~GHl~i~~~a~~~~--d~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~ 76 (182)
T smart00764 6 MNANPFTLGHRYLVEQAAAEC--DWVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFP 76 (182)
T ss_pred ECCCCCCHHHHHHHHHHHHHC--CceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccCh
Confidence 379999999999999999998 4566666443 1 467899999999995 444332221 111
Q ss_pred -CC--------------chHHHH----hhcCCcEEEecCCcccccCCCcc-hHHHHHHhcC-eEEEccc----CCCCChH
Q 020938 95 -WV--------------VTQEFL----DKHQIDFVAHDSLPYADASGAGK-DVYEFVKAAG-KFKETKR----TDGISTS 149 (319)
Q Consensus 95 -~~--------------~t~e~L----~~~kpD~VvhG~d~y~d~~~~~~-D~y~~lK~~G-~~~~~~r----T~giSTT 149 (319)
+- ...+|+ +.+++..|+.|.|...+....|+ +..+.+...| .+..++| ...+|||
T Consensus 77 ~~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~~g~~iSST 156 (182)
T smart00764 77 SYFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKANGQPISAS 156 (182)
T ss_pred hhhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccCCCcEECHH
Confidence 11 123444 35799999999987665433333 1222223345 4566666 4568999
Q ss_pred HHHHHHHH
Q 020938 150 DIIMRIVK 157 (319)
Q Consensus 150 dII~RIl~ 157 (319)
.|++-|..
T Consensus 157 ~IR~~L~~ 164 (182)
T smart00764 157 TVRKLLKE 164 (182)
T ss_pred HHHHHHHc
Confidence 99877754
No 55
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.88 E-value=1e-08 Score=99.99 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=52.1
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCccccc
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP 91 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi 91 (319)
.+++.+.|+|||||.||+.++++|.++| |.|+|+|.+. + ++.+|.++|++||+. +...+.|.+
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~--d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~v 202 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQC--DWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVTV 202 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHC--CEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 3579999999999999999999999998 7888888642 2 579999999999994 566555543
No 56
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=98.83 E-value=2.7e-08 Score=91.93 Aligned_cols=65 Identities=25% Similarity=0.210 Sum_probs=45.5
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCe--EEEEe----ccCccccccCCCCCCCHHHHHHHHH-hccCCcccc
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTY--LLVGC----CNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVI 90 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~--LIVGV----~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDeVV 90 (319)
+++++|+|||+|.||+.++++|.+.++-+. .+|++ +.+. ..| .+..+.++|++|++ ++.....+.
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~---~~k-~~~~~~~~Rl~Ml~lai~~~~~~~ 73 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDA---YGK-KGLASAKHRVAMCRLAVQSSDWIR 73 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccC---CCC-CCCCCHHHHHHHHHHHHccCCCEE
Confidence 578899999999999999999988764343 23221 2222 123 56789999999998 566544444
No 57
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=98.61 E-value=1.7e-07 Score=89.84 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=86.3
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCC---CCeEEEEeccCcc--ccccCCCCCCCHHHHHHHHHhccCCcccccCCC---
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFP---NTYLLVGCCNDET--THKFKGKTVMTEDERYESLRHCKWVDEVIPDAP--- 94 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~---gd~LIVGV~sDe~--v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~ap--- 94 (319)
|++-|.||-+|.||..+|++|++... ....++-....+. ....+..++++.++|..+++++. ||.+++-..
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~G-vd~~~~~~F~~~ 79 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIKG-VEQLLVVVFDEE 79 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHcC-CCEEEEeCCCHH
Confidence 46789999999999999999986531 1223333333322 11111123899999999999985 888876321
Q ss_pred -CCc-hHHHHh-----hcCCcEEEecCCcccccCCCcc--hHHHHHHhcC-eEEEcc---cCCCCChHHHHHHHHHhhHH
Q 020938 95 -WVV-TQEFLD-----KHQIDFVAHDSLPYADASGAGK--DVYEFVKAAG-KFKETK---RTDGISTSDIIMRIVKDYNQ 161 (319)
Q Consensus 95 -~~~-t~e~L~-----~~kpD~VvhG~d~y~d~~~~~~--D~y~~lK~~G-~~~~~~---rT~giSTTdII~RIl~~yd~ 161 (319)
..+ ..+|++ .+++..||.|.|........|+ .+.+..++.| .+..++ ....||||.|++-|..---.
T Consensus 80 ~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~G~i~ 159 (288)
T TIGR00083 80 FANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKNGDLE 159 (288)
T ss_pred HHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHcCCHH
Confidence 112 234553 3689999999987654322222 2223333345 222332 22579999998877654333
Q ss_pred HHHHHhhc
Q 020938 162 YVMRNLDR 169 (319)
Q Consensus 162 y~~Rnl~r 169 (319)
...+-|-|
T Consensus 160 ~A~~lLGr 167 (288)
T TIGR00083 160 LANKLLGR 167 (288)
T ss_pred HHHHhhhh
Confidence 33444433
No 58
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=98.56 E-value=6.4e-08 Score=96.25 Aligned_cols=91 Identities=22% Similarity=0.282 Sum_probs=42.7
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCC-CCCHHHHHHHHHhccCCccccc-CCCCCc-
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKT-VMTEDERYESLRHCKWVDEVIP-DAPWVV- 97 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrP-V~s~eER~e~V~a~k~VDeVVi-~ap~~~- 97 (319)
++|=+---|.|||.||+.+|++||+..+.| .||+|.|..+|+| |.| +++-..|+++-..| .||-||. +.++.+
T Consensus 2 k~~GIIaEYNPFHnGH~y~i~~~k~~~~ad-~ii~vMSGnFvQR--GEPAi~dKw~RA~~AL~~-GaDLViELP~~~a~q 77 (388)
T PF05636_consen 2 KVVGIIAEYNPFHNGHLYQIEQAKKITGAD-VIIAVMSGNFVQR--GEPAIIDKWTRAEMALKN-GADLVIELPVVYALQ 77 (388)
T ss_dssp -----E---TT--HHHHHHHHHHH---TSS-EEEEEE--TTSBT--SSB-SS-HHHHHHHHHHH-T-SEEEE---G----
T ss_pred CCCCeEEeECCccHHHHHHHHHHhccCCCC-EEEEEECCCcccC--CCeeeCCHHHHHHHHHHc-CCCEEEECCCccccc
Confidence 333344569999999999999999998656 5677889989986 777 99999999997766 4999984 444332
Q ss_pred --------hHHHHhhcCCcEEEecCC
Q 020938 98 --------TQEFLDKHQIDFVAHDSL 115 (319)
Q Consensus 98 --------t~e~L~~~kpD~VvhG~d 115 (319)
...+|..+++|.++.|..
T Consensus 78 sA~~FA~gaV~lL~~lgvd~l~FGsE 103 (388)
T PF05636_consen 78 SAEYFARGAVSLLNALGVDYLSFGSE 103 (388)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 347788889999999974
No 59
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.55 E-value=1.2e-07 Score=85.34 Aligned_cols=62 Identities=23% Similarity=0.303 Sum_probs=53.5
Q ss_pred CCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-cc
Q 020938 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CK 84 (319)
Q Consensus 19 r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k 84 (319)
+|+++++-|.|-|||.||+.+++.|.... |.|||+|+|+...+.. +-.+|..||..|++. ++
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~v--DeliI~iGSa~~~~t~--~nPfTagER~~mi~~~L~ 64 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKV--DELIIVIGSAQESHTL--KNPFTAGERIPMIRDRLR 64 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhC--CEEEEEEccCcccccc--cCCCCccchhHHHHHHHH
Confidence 67889999999999999999999999995 8999999998765543 347899999999994 44
No 60
>PRK13670 hypothetical protein; Provisional
Probab=98.55 E-value=2.8e-07 Score=91.71 Aligned_cols=91 Identities=21% Similarity=0.162 Sum_probs=67.1
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCC-CCCCHHHHHHHHHhccCCcccccC-CCCC-c
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGK-TVMTEDERYESLRHCKWVDEVIPD-APWV-V 97 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGr-PV~s~eER~e~V~a~k~VDeVVi~-ap~~-~ 97 (319)
++|=+---||+||.||..+|++|++..+. -++|+|.+-..+.+ |. ++++..+|++++..+. ||.|+.- ..+. .
T Consensus 2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~-~~~~~Vmp~~f~qr--g~p~i~~~~~R~~~a~~~G-vD~vielpf~~a~~ 77 (388)
T PRK13670 2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNA-DVTIAVMSGNFVQR--GEPAIVDKWTRAKMALENG-VDLVVELPFLYSVQ 77 (388)
T ss_pred ceeEEEeeeCCcCHHHHHHHHHHHHHHhC-CCcEEEecHHHhCC--CCCCCCCHHHHHHHHHHcC-CCEEEEeCCchHhC
Confidence 34444457999999999999999998754 46666667777765 43 4999999999999874 9988862 2221 1
Q ss_pred -hHH-------HHhhcCCcEEEecCC
Q 020938 98 -TQE-------FLDKHQIDFVAHDSL 115 (319)
Q Consensus 98 -t~e-------~L~~~kpD~VvhG~d 115 (319)
..+ +|..++++.+|.|.+
T Consensus 78 sae~F~~~aV~iL~~l~v~~lv~G~e 103 (388)
T PRK13670 78 SADFFAEGAVSILDALGVDSLVFGSE 103 (388)
T ss_pred CHHHHHHhHHHHHHHcCCCEEEEcCC
Confidence 122 455588999999986
No 61
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=98.45 E-value=1.5e-06 Score=84.30 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=94.2
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeE-EEEeccCccccccC-C-C-C--CCCHHHHHHHHHhccCCcccccCC
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYL-LVGCCNDETTHKFK-G-K-T--VMTEDERYESLRHCKWVDEVIPDA 93 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~L-IVGV~sDe~v~~~K-G-r-P--V~s~eER~e~V~a~k~VDeVVi~a 93 (319)
...|++-|.||=+|.||..+|++|++.....-+ .+.++-++.-.... . . | +++..+|++.++.+. ||.+++-.
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~g-vd~~~v~~ 93 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYG-VDALVVLD 93 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcC-CcEEEEEe
Confidence 446999999999999999999999954322223 23333343222111 1 1 2 899999999999986 88887621
Q ss_pred C-----CCchHHHH----hhcCCcEEEecCCcccccCCCcchHHHHHHhcC----eEEEcc--cCC--CCChHHHHHHHH
Q 020938 94 P-----WVVTQEFL----DKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG----KFKETK--RTD--GISTSDIIMRIV 156 (319)
Q Consensus 94 p-----~~~t~e~L----~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G----~~~~~~--rT~--giSTTdII~RIl 156 (319)
. .....+|+ +.+++..++.|.|........++ .+.++..| .+..+| ... .+|||.|++-+.
T Consensus 94 F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~--~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~ 171 (304)
T COG0196 94 FDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGN--AELLRELGQKGFEVTIVPKINEEGIRISSTAIRQALR 171 (304)
T ss_pred CCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCC--HHHHHHhccCCceEEEeccEecCCcEEchHHHHHHHh
Confidence 1 11233444 48899999999876554322222 23455554 344444 233 499999988887
Q ss_pred HhhHHHHHHHhhcCCc
Q 020938 157 KDYNQYVMRNLDRGYS 172 (319)
Q Consensus 157 ~~yd~y~~Rnl~rG~~ 172 (319)
..--....+-|-+-|+
T Consensus 172 ~gdl~~A~~lLG~py~ 187 (304)
T COG0196 172 EGDLEEANKLLGRPYS 187 (304)
T ss_pred cCCHHHHHHhcCCCeE
Confidence 6655555666655555
No 62
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=98.40 E-value=7e-07 Score=78.47 Aligned_cols=127 Identities=22% Similarity=0.233 Sum_probs=69.8
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCC-CCeEEEEeccCcc---ccc-cC-CCCCCCHHHHHHHHHhccCCcccccC-
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFP-NTYLLVGCCNDET---THK-FK-GKTVMTEDERYESLRHCKWVDEVIPD- 92 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~-gd~LIVGV~sDe~---v~~-~K-GrPV~s~eER~e~V~a~k~VDeVVi~- 92 (319)
...|++-|.||-+|.||..+|++|.+.+. .....|.++=++. +.. .+ ...++|.+||.++++++. ||.+++-
T Consensus 5 ~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~G-vd~~~~~~ 83 (157)
T PF06574_consen 5 KKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLG-VDYVIVIP 83 (157)
T ss_dssp S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTT-ESEEEEE-
T ss_pred CCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcC-CCEEEEec
Confidence 34699999999999999999999987741 1223333333422 111 11 124999999999999974 8887752
Q ss_pred -CC---CCchHHHHh-----hcCCcEEEecCCcccccCCCcchHHHHHHhc----C-eEEEccc----CCCCChH
Q 020938 93 -AP---WVVTQEFLD-----KHQIDFVAHDSLPYADASGAGKDVYEFVKAA----G-KFKETKR----TDGISTS 149 (319)
Q Consensus 93 -ap---~~~t~e~L~-----~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~----G-~~~~~~r----T~giSTT 149 (319)
.+ .....+|++ .+++..+|.|.|........| + .+.|++. | .+..++. ...||||
T Consensus 84 F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G-~-~~~L~~~~~~~g~~v~~v~~~~~~~~~ISSt 156 (157)
T PF06574_consen 84 FTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSG-D-VELLKELGKEYGFEVEVVPPVKIDGEKISST 156 (157)
T ss_dssp CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEE-E-HHHHHHCTTTT-SEEEEE---EETTEE-SHH
T ss_pred chHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCC-C-HHHHHHhcccCceEEEEECCEEcCCcEeCCC
Confidence 11 223456665 468899999998655432212 2 2344444 4 3444432 3467776
No 63
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=98.34 E-value=5.9e-07 Score=85.13 Aligned_cols=70 Identities=29% Similarity=0.343 Sum_probs=57.6
Q ss_pred CCCCCCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCC-CCCCHHHHHHHHH
Q 020938 11 STDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGK-TVMTEDERYESLR 81 (319)
Q Consensus 11 ~~~~~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGr-PV~s~eER~e~V~ 81 (319)
+..+.|.....++.++|+||-+|.||--+|..|+.+. .+.|||||+.|+...+.+-. -+-|.++|++-|.
T Consensus 133 ~e~~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la-~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~ 203 (293)
T KOG3351|consen 133 SEKSGPANKFMVVALGGTFDRLHDGHKVLLSVAAELA-SDRLVVGVTDDELLKKKVLKELIEPIEERKEHVS 203 (293)
T ss_pred cccccchhcceeEEeccchhhhccchHHHHHHHHHHh-hceEEEEecChHHHHHhHHHHHhhhHHHHHHHHH
Confidence 3455666777789999999999999999999999987 68999999999887653311 3889999998665
No 64
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=98.27 E-value=7e-06 Score=76.20 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=45.5
Q ss_pred CCCCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCe-EEEEeccCcc-ccccCCCCCCCHHHHHHHHH-hccC
Q 020938 13 DTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTY-LLVGCCNDET-THKFKGKTVMTEDERYESLR-HCKW 85 (319)
Q Consensus 13 ~~~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~-LIVGV~sDe~-v~~~KGrPV~s~eER~e~V~-a~k~ 85 (319)
+..+...-.+.+.+|+|||+|.||+.+++.|++...-+. .+|++.--+. ....| ....+.++|++|++ ++..
T Consensus 15 ~~~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k-~~~~~~~~Rl~Ml~lai~~ 89 (236)
T PLN02945 15 NSTGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKK-KGLASAEHRIQMCQLACED 89 (236)
T ss_pred cCccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccccc-CCCCCHHHHHHHHHHHhcC
Confidence 334444445678889999999999999999887653333 3343221111 01112 35679999999997 5543
No 65
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=98.07 E-value=1.6e-05 Score=72.08 Aligned_cols=121 Identities=18% Similarity=0.262 Sum_probs=81.1
Q ss_pred cCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCccccc--CCCCCch-----H-
Q 020938 29 YDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIP--DAPWVVT-----Q- 99 (319)
Q Consensus 29 FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDeVVi--~ap~~~t-----~- 99 (319)
-.||+.||..++++|++.| |.|.|=|.+.. +..+|..+|+.||+ .++..+.|++ +.+|.++ .
T Consensus 8 aNPFT~GH~yLiE~Aa~~~--d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFPsY 78 (182)
T PF08218_consen 8 ANPFTLGHRYLIEQAAKEC--DWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFPSY 78 (182)
T ss_pred CCCCccHHHHHHHHHHHhC--CEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccChhh
Confidence 4799999999999999997 78877776542 46899999999999 4777777764 2222110 0
Q ss_pred ----------------------HHHhhcCCcEEEecCCcccccCCCcch-HHHHHHhcC-eEEEcccC----CCCChHHH
Q 020938 100 ----------------------EFLDKHQIDFVAHDSLPYADASGAGKD-VYEFVKAAG-KFKETKRT----DGISTSDI 151 (319)
Q Consensus 100 ----------------------e~L~~~kpD~VvhG~d~y~d~~~~~~D-~y~~lK~~G-~~~~~~rT----~giSTTdI 151 (319)
.+...++|..-..|..|+...+...+. ..++|-..| .++++||. ..||.|.+
T Consensus 79 FlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~ISAS~V 158 (182)
T PF08218_consen 79 FLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVTRIYNEAMKEILPPYGIEVVEIPRKEINGEPISASRV 158 (182)
T ss_pred hccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHHHHHHHHHHHhccccCCEEEEEecccCCCcEEcHHHH
Confidence 122235777777888887654221111 223455566 68888884 47899988
Q ss_pred HHHHHHh
Q 020938 152 IMRIVKD 158 (319)
Q Consensus 152 I~RIl~~ 158 (319)
++-|.+.
T Consensus 159 R~~l~~~ 165 (182)
T PF08218_consen 159 RKLLKEG 165 (182)
T ss_pred HHHHHcC
Confidence 7666543
No 66
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.02 E-value=1.3e-05 Score=79.32 Aligned_cols=88 Identities=24% Similarity=0.287 Sum_probs=66.0
Q ss_pred EcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCC-CCCHHHHHHHHHhccCCcccccC--------CCC
Q 020938 25 ADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKT-VMTEDERYESLRHCKWVDEVIPD--------APW 95 (319)
Q Consensus 25 ~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrP-V~s~eER~e~V~a~k~VDeVVi~--------ap~ 95 (319)
+---|||||.||..+|++|+.+|++|..|+++.. .++++ |.| +++-.+|..+..++ .+|.||+. +++
T Consensus 6 ii~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msg-df~qR--gepai~~k~~r~~~aL~~-g~D~VIelP~~~s~q~a~~ 81 (358)
T COG1323 6 IIAEYNPFHNGHQYHINKAREEFKGDEIIAVMSG-DFTQR--GEPAIGHKWERKKMALEG-GADLVIELPLERSGQGAPY 81 (358)
T ss_pred eeeecCcccccHHHHHHHHHHhccCCceEEeeec-chhhc--CCCccccHHHHHhhhhhc-CceEEEEcceEEecCCCch
Confidence 3346999999999999999998876655555544 46654 554 99999999998876 48888862 233
Q ss_pred C--chHHHHhhcCCcEEEecCCc
Q 020938 96 V--VTQEFLDKHQIDFVAHDSLP 116 (319)
Q Consensus 96 ~--~t~e~L~~~kpD~VvhG~d~ 116 (319)
. -....+..+++|.+|.|..+
T Consensus 82 fa~~av~il~~l~~~~i~fgse~ 104 (358)
T COG1323 82 FATRAVRILNALGGDDIAFGSPP 104 (358)
T ss_pred hhHHHHHHHHhcCCCeEEEeCCC
Confidence 2 24467778899999999843
No 67
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=96.26 E-value=0.011 Score=57.04 Aligned_cols=67 Identities=19% Similarity=0.105 Sum_probs=50.3
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC---CCCCCHHHHHHHHHhccCCcccccCCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG---KTVMTEDERYESLRHCKWVDEVIPDAP 94 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG---rPV~s~eER~e~V~a~k~VDeVVi~ap 94 (319)
.|.+-|. +|.||..++++|++.+ +.+||.+...+..-.... ..+++.+++.++++.+ .||.++.+.+
T Consensus 26 ~VpTmG~---LH~GH~~LI~~a~~~a--~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P~~ 95 (282)
T TIGR00018 26 FVPTMGN---LHDGHMSLIDRAVAEN--DVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFAPSV 95 (282)
T ss_pred EEECCCc---ccHHHHHHHHHHHHhC--CeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEECCCH
Confidence 4667787 9999999999999996 688888877654311111 2488999999999987 4888877543
No 68
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.22 E-value=0.047 Score=53.68 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=50.6
Q ss_pred CCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCccccc
Q 020938 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIP 91 (319)
Q Consensus 18 ~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDeVVi 91 (319)
...+++-+----.||++||--+++||.+.| |.|.+=|-++. +..+|.++|..+|. .+...+.|.+
T Consensus 143 ~gkkIgaIVMNANPFTLGH~YLVEqAaaqc--DwlHLFvV~eD-------~S~f~y~~R~~Lv~~G~~~l~Nvt~ 208 (352)
T COG3053 143 PGKKIGAIVMNANPFTLGHRYLVEQAAAQC--DWLHLFVVKED-------SSLFPYEDRLDLVKKGTADLPNVTV 208 (352)
T ss_pred CCCeeEEEEEeCCCccchhHHHHHHHHhhC--CEEEEEEEecc-------cccCCHHHHHHHHHHhhccCCceEE
Confidence 344566666778999999999999999997 77776665542 35799999999988 5777776654
No 69
>PLN02660 pantoate--beta-alanine ligase
Probab=95.84 E-value=0.024 Score=54.95 Aligned_cols=67 Identities=18% Similarity=0.119 Sum_probs=50.2
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCcccccc-CC--CCCCCHHHHHHHHHhccCCcccccCCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKF-KG--KTVMTEDERYESLRHCKWVDEVIPDAP 94 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~-KG--rPV~s~eER~e~V~a~k~VDeVVi~ap 94 (319)
.|.+-|. +|.||..++++|++.+ +.+||.+..++..-.. .. +.+.+.+++++++..+. ||.|+.+.+
T Consensus 25 fVpTmG~---LH~GH~~LI~~a~~~a--~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~G-VD~vf~P~~ 94 (284)
T PLN02660 25 LVPTMGY---LHEGHLSLVRAARARA--DVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAALG-VDAVFNPHD 94 (284)
T ss_pred EEEcCch---hhHHHHHHHHHHHHhC--CEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHcC-CCEEECCCh
Confidence 4666777 9999999999999996 6788888766543111 11 24889999999998874 888877544
No 70
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=95.78 E-value=0.017 Score=55.73 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=46.7
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC---CCCCCHHHHHHHHHhccCCcccccC
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG---KTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG---rPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
|.+-|. +|.||..+|++|++.+ +.+||.+...+..-.... ..+.+.++|.++++.+ .||.+++.
T Consensus 27 v~tmG~---lH~GH~~Li~~a~~~a--~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p 93 (281)
T PRK00380 27 VPTMGA---LHEGHLSLVREARAEA--DIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAP 93 (281)
T ss_pred EEccCc---eeHHHHHHHHHHHHhC--CEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeC
Confidence 444455 9999999999999986 678888866654311111 2378999999999987 48887764
No 71
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=95.39 E-value=0.036 Score=53.38 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=49.0
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCcccccc-CC--CCCCCHHHHHHHHHhccCCcccccC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKF-KG--KTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~-KG--rPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
.|.+-|. +|.||..++++|++.+ +.+||.+...+..-.. .. ..+.+.++++++++.+ .||.|+.+
T Consensus 26 ~V~TmG~---LH~GH~~LI~~a~~~a--~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~p 93 (277)
T cd00560 26 FVPTMGA---LHEGHLSLVRRARAEN--DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFAP 93 (277)
T ss_pred EEECCCc---ccHHHHHHHHHHHHhC--CEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEECC
Confidence 4667777 9999999999999996 7889998777543111 11 2378899999999987 47877643
No 72
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=94.03 E-value=0.15 Score=48.05 Aligned_cols=89 Identities=19% Similarity=0.252 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcCccCcCChHHHHHHHHHhhhC---CCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCccccc
Q 020938 16 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSF---PNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIP 91 (319)
Q Consensus 16 ~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf---~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi 91 (319)
+...++..++.|+|.|...+|+++++-|+-.- .+-.++=|+.|= .--.||.+...+..-|+.|+++ |..-+.+-+
T Consensus 4 ~~~~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSP-V~DaYkKKgLipa~hrv~~~ElAt~~Skwl~v 82 (234)
T KOG3199|consen 4 SEKTPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSP-VGDAYKKKGLIPAYHRVRMVELATETSKWLMV 82 (234)
T ss_pred cccceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecc-cchhhhccccchhhhHHHHHHhhhccccceec
Confidence 34456778899999999999999999999532 234677778661 1124555679999999999995 544444443
Q ss_pred ------CCCCCchHHHHhhc
Q 020938 92 ------DAPWVVTQEFLDKH 105 (319)
Q Consensus 92 ------~ap~~~t~e~L~~~ 105 (319)
+..|.-|...|+.|
T Consensus 83 D~weslQ~~wt~T~~vlrHh 102 (234)
T KOG3199|consen 83 DGWESLQKEWTRTVKVLRHH 102 (234)
T ss_pred chhhhccHHHhhhhHHHHHH
Confidence 33355555555544
No 73
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=93.25 E-value=0.16 Score=52.94 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=41.6
Q ss_pred CccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccC---CCCCCCHHHHHHHHHhccCCcccccC
Q 020938 27 GIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFK---GKTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 27 G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~K---GrPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
.|-=-||.||+.++++|++.+ |.+||.|--++.--... .+-.-+++.=++++..+ .||.|+.+
T Consensus 26 PTMG~LH~GHlsLi~~A~~~~--d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~P 91 (512)
T PRK13477 26 PTMGALHQGHLSLIRRARQEN--DVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESA-GVDAIFAP 91 (512)
T ss_pred CCCcchhHHHHHHHHHHHHhC--CEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhc-CCCEEECC
Confidence 455569999999999999995 89999995543211000 01245566666666665 47777654
No 74
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=92.17 E-value=0.19 Score=54.34 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=17.5
Q ss_pred HHhccccchhHHHHHHHHHHhhcCCCCcc
Q 020938 234 MFEEGCHKMGTAIRDRIQERLRGQGSGKY 262 (319)
Q Consensus 234 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (319)
.|+..|+.+...--..|-.-|....+...
T Consensus 612 vf~~~~~~~t~~~l~~ll~vl~~~~~~~~ 640 (784)
T PF04931_consen 612 VFEAFCPHLTESGLQLLLDVLDAKENKQG 640 (784)
T ss_pred HHHHHHhhcCHHHHHHHHHHhccCCCCcc
Confidence 45555666655556677777775544443
No 75
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=91.77 E-value=0.43 Score=46.34 Aligned_cols=60 Identities=22% Similarity=0.199 Sum_probs=33.4
Q ss_pred CcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC---CCCCCHHHHHHHHHhccCCcccccC
Q 020938 30 DLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG---KTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 30 DLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG---rPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
=-||.||+.++++|++.+ |.+||.|--++.--...- +..-+.+.=++++..+ .||.|+.+
T Consensus 31 GaLHeGHlsLi~~A~~~~--d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~vF~P 93 (280)
T PF02569_consen 31 GALHEGHLSLIRRARAEN--DVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAVFAP 93 (280)
T ss_dssp SS--HHHHHHHHHHHHHS--SEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEEE--
T ss_pred chhhHHHHHHHHHHHhCC--CEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEEEcC
Confidence 346999999999999985 899999976543211110 2245566666666655 47877754
No 76
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=90.87 E-value=0.75 Score=46.35 Aligned_cols=90 Identities=17% Similarity=0.085 Sum_probs=57.9
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhcc--CC--ccccc-CCCCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCK--WV--DEVIP-DAPWV 96 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k--~V--DeVVi-~ap~~ 96 (319)
+|++.=+|||+|.||..+++.|....+.|.|+|-..--. .| .-.++.+-|+++++.+. +- +.|++ ..|+.
T Consensus 185 ~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~----~k-~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~e 259 (383)
T TIGR00339 185 TVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL----TK-PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPLA 259 (383)
T ss_pred eEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC----CC-CCCCCHHHHHHHHHHHHhhCCCCCceEEEecchH
Confidence 577789999999999999999998633465544443322 12 25899999999999652 21 23322 12211
Q ss_pred -----ch---HH--HHhhcCCcEEEecCCc
Q 020938 97 -----VT---QE--FLDKHQIDFVAHDSLP 116 (319)
Q Consensus 97 -----~t---~e--~L~~~kpD~VvhG~d~ 116 (319)
.. .. +-+.+++.+++.|.|.
T Consensus 260 m~~agpreall~Aiir~nyG~th~IiG~Dh 289 (383)
T TIGR00339 260 MRYAGPREAIWHAIIRKNYGATHFIVGRDH 289 (383)
T ss_pred hhcCCcHHHHHHHHHHHHCCCCEEEECCCC
Confidence 11 12 3345788999999764
No 77
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=85.28 E-value=0.8 Score=44.62 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.1
Q ss_pred ccCcCChHHHHHHHHHhhhCCCCeEEEEeccCcc
Q 020938 28 IYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDET 61 (319)
Q Consensus 28 ~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~ 61 (319)
+---||-||+.++++|++. +|.+||.|--++.
T Consensus 29 TMG~LH~GHlsLVr~A~~~--~d~VVVSIFVNP~ 60 (285)
T COG0414 29 TMGNLHEGHLSLVRRAKKE--NDVVVVSIFVNPL 60 (285)
T ss_pred CCcccchHHHHHHHHHhhc--CCeEEEEEEeChh
Confidence 5556999999999999988 5899999976653
No 78
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=81.70 E-value=0.41 Score=48.74 Aligned_cols=29 Identities=3% Similarity=-0.120 Sum_probs=25.3
Q ss_pred CCeEEEEcCccCcCChHHHHHHHHHhhhC
Q 020938 19 RPVRVYADGIYDLFHFGHARSLEQAKKSF 47 (319)
Q Consensus 19 r~~rVy~~G~FDLfH~GHi~~LeqAKklf 47 (319)
..+.|+++||||.+|.||+.+|.+|..-+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 34569999999999999999999998764
No 79
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=79.34 E-value=1 Score=43.78 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHHhc
Q 020938 70 VMTEDERYESLRHC 83 (319)
Q Consensus 70 V~s~eER~e~V~a~ 83 (319)
.-+.-+|+-+-.+|
T Consensus 56 FC~s~qrlp~Ca~C 69 (314)
T PF06524_consen 56 FCQSVQRLPMCAHC 69 (314)
T ss_pred hhhhhhcCchhhhc
Confidence 33555666666666
No 80
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=67.09 E-value=5.2 Score=43.56 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=9.2
Q ss_pred HHHHHHHHhccccchhHH
Q 020938 228 VAGFLEMFEEGCHKMGTA 245 (319)
Q Consensus 228 ~~~f~~~f~~~~~~~~~~ 245 (319)
+.=+|.+..+..|.|++.
T Consensus 591 veiLLslls~~s~llR~~ 608 (784)
T PF04931_consen 591 VEILLSLLSQPSALLRKV 608 (784)
T ss_pred HHHHHHHHhCcchHHHHH
Confidence 444455555555555443
No 81
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=67.04 E-value=5.3 Score=38.21 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=30.5
Q ss_pred CCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCcc
Q 020938 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDET 61 (319)
Q Consensus 19 r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~ 61 (319)
+.++++++ +--.+|-||+.+++||.+. +++.+|.|.-++.
T Consensus 23 g~tIgfVP-TMG~LHeGH~SLvrqs~~~--~~~tVVSIfVNP~ 62 (283)
T KOG3042|consen 23 GETIGFVP-TMGCLHEGHASLVRQSVKE--NTYTVVSIFVNPS 62 (283)
T ss_pred CCeEEEec-ccccccccHHHHHHHHHhh--CceEEEEEEechh
Confidence 34444443 4556999999999999999 5899999976653
No 82
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=66.41 E-value=5 Score=37.78 Aligned_cols=13 Identities=46% Similarity=0.705 Sum_probs=6.5
Q ss_pred CCCCCCCcccccc
Q 020938 268 EEEEDDDEEYYYD 280 (319)
Q Consensus 268 ~~~~~~~~~~~~~ 280 (319)
..++++|++|..+
T Consensus 35 f~Eee~D~ef~~~ 47 (240)
T PF05764_consen 35 FQEEEDDEEFESE 47 (240)
T ss_pred ccccCCCccccCC
Confidence 5555555544433
No 83
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=62.11 E-value=2.6 Score=34.15 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=0.0
Q ss_pred Hhhhhhhhh
Q 020938 304 EKEMSEKDE 312 (319)
Q Consensus 304 ~~~~~~~~~ 312 (319)
|..|..|..
T Consensus 50 ee~m~rK~k 58 (81)
T PF14812_consen 50 EEPMPRKGK 58 (81)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 344555543
No 84
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=52.22 E-value=2.2e+02 Score=29.35 Aligned_cols=133 Identities=11% Similarity=0.030 Sum_probs=72.1
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEecc-CccccccCCCCCCCHHHHHHHHHhccCC-----cccccCCCCC
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCN-DETTHKFKGKTVMTEDERYESLRHCKWV-----DEVIPDAPWV 96 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~s-De~v~~~KGrPV~s~eER~e~V~a~k~V-----DeVVi~ap~~ 96 (319)
..+....|.+.. .-.+|+..++.+ -..|.+||-| ++.+.+.=++. .+.++-.+.++.|+-. =..+++.|..
T Consensus 274 w~~~~r~~~i~~-d~ell~~l~~aG-~~~v~iGiES~~~~~L~~~~K~-~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~e 350 (497)
T TIGR02026 274 WGINTRVTDIVR-DADILHLYRRAG-LVHISLGTEAAAQATLDHFRKG-TTTSTNKEAIRLLRQHNILSEAQFITGFENE 350 (497)
T ss_pred EEEecccccccC-CHHHHHHHHHhC-CcEEEEccccCCHHHHHHhcCC-CCHHHHHHHHHHHHHCCCcEEEEEEEECCCC
Confidence 334455555522 345666666654 4689999977 43333322233 3555555555554321 1234455644
Q ss_pred c------hHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEE---------cccCCCCChHHHHHHHHHhhHH
Q 020938 97 V------TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKE---------TKRTDGISTSDIIMRIVKDYNQ 161 (319)
Q Consensus 97 ~------t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~---------~~rT~giSTTdII~RIl~~yd~ 161 (319)
. +.+++..++||.+.... +... +|...|+.+++.|.+.. +=.+.++|..+|.+-+.+.|..
T Consensus 351 t~e~~~~t~~~~~~l~~~~~~~~~--~tP~--PGT~l~~~~~~~~~~~d~~~y~~~~~~~~~~~m~~~El~~~~~~~~~~ 426 (497)
T TIGR02026 351 TDETFEETYRQLLDWDPDQANWLM--YTPW--PFTSLFGELSDRVEVQDYTKYNFVTPIMKPTHMPRWEILLGVKLNYIR 426 (497)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEE--ecCC--CCcHHHHHHHhhcccCchhhccccceEeeCCCCCHHHHHHHHHHHHHH
Confidence 2 45667778998765432 2222 46678888777664311 0124567777777777666654
Q ss_pred H
Q 020938 162 Y 162 (319)
Q Consensus 162 y 162 (319)
|
T Consensus 427 f 427 (497)
T TIGR02026 427 F 427 (497)
T ss_pred H
Confidence 3
No 85
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=52.00 E-value=8.8 Score=42.36 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=13.6
Q ss_pred EcCccCcCChHHHHHHHHHhhhCCCCeEEEEe
Q 020938 25 ADGIYDLFHFGHARSLEQAKKSFPNTYLLVGC 56 (319)
Q Consensus 25 ~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV 56 (319)
+.|.-=||| +.-++.|..--.|++.+.-|
T Consensus 498 I~g~~VPFH---istikn~s~~~eg~~tYLRi 526 (960)
T KOG1189|consen 498 IFGIPVPFH---ISTIKNASQNVEGDYTYLRI 526 (960)
T ss_pred ecCccccee---hhhhhcccccccCceeEEEE
Confidence 344444554 44555555544444444333
No 86
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=51.17 E-value=8.9 Score=35.70 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=50.5
Q ss_pred CcccccCCCCCchHHHHhhcCCcEEEecCCcccccC-CCcchHHHHHHhcCeEE-Ec--ccCCCCChHHHHHHHHHhhHH
Q 020938 86 VDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADAS-GAGKDVYEFVKAAGKFK-ET--KRTDGISTSDIIMRIVKDYNQ 161 (319)
Q Consensus 86 VDeVVi~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~-~~~~D~y~~lK~~G~~~-~~--~rT~giSTTdII~RIl~~yd~ 161 (319)
|-++|...|. +..++++++|||-+.|..+..... ..+-|.-..+.+..... .. .--...|...||.-|+..+-.
T Consensus 8 vg~iv~~~p~--~~~vf~~~~idfCcgG~~~l~ea~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~LidyI~~~~H~ 85 (220)
T PRK10992 8 LGELALSIPR--ATALFREYDLDFCCGGKQTLARAAARKNLDIDVIEARLAALQEQPIEKDWRSAPLAELIDHIIVRYHD 85 (220)
T ss_pred HHHHHHhCcc--HHHHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHHHHHHhccccCChhhCCHHHHHHHHHHHHhH
Confidence 4556666664 568999999999999986544321 11222222222221110 00 111246889999999999999
Q ss_pred HHHHHhhcC
Q 020938 162 YVMRNLDRG 170 (319)
Q Consensus 162 y~~Rnl~rG 170 (319)
|+++++..-
T Consensus 86 ~~r~~lp~L 94 (220)
T PRK10992 86 RHREQLPEL 94 (220)
T ss_pred HHHHHHHHH
Confidence 998887763
No 87
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=50.05 E-value=30 Score=33.36 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccc
Q 020938 16 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVI 90 (319)
Q Consensus 16 ~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVV 90 (319)
...+-+.||+.|- --.-|-+-|++=-+.| |+.|-+.|-+|..+.+.||.-..++.++....++|+.-.=||
T Consensus 8 ~DT~~TKifVggL---~w~T~~~~l~~yFeqf-GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piI 78 (247)
T KOG0149|consen 8 GDTTFTKIFVGGL---AWETHKETLRRYFEQF-GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPII 78 (247)
T ss_pred CCceEEEEEEcCc---ccccchHHHHHHHHHh-CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcc
Confidence 4556678999983 3344566666666667 688988889999999999999999999999999998543333
No 88
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=49.79 E-value=25 Score=36.79 Aligned_cols=31 Identities=29% Similarity=0.591 Sum_probs=23.8
Q ss_pred CCCCeEEEEcC--ccCcCChHHHH------HHHHHhhhC
Q 020938 17 SDRPVRVYADG--IYDLFHFGHAR------SLEQAKKSF 47 (319)
Q Consensus 17 ~~r~~rVy~~G--~FDLfH~GHi~------~LeqAKklf 47 (319)
....+++|++| ++|..|+||++ +|.+..++.
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~ 58 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFL 58 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhc
Confidence 34567899999 69999999986 466666665
No 89
>PLN02413 choline-phosphate cytidylyltransferase
Probab=48.93 E-value=66 Score=31.81 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=8.4
Q ss_pred HHHHHHhhcCCCCc
Q 020938 248 DRIQERLRGQGSGK 261 (319)
Q Consensus 248 ~~~~~~~~~~~~~~ 261 (319)
.-|+.++....++.
T Consensus 255 ~~~~~~~~~~~~~~ 268 (294)
T PLN02413 255 TAIKDRIQERLMRQ 268 (294)
T ss_pred HHHHHHHHHHhccc
Confidence 55667776655544
No 90
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=48.20 E-value=1.8e+02 Score=25.19 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHhhc
Q 020938 226 RWVAGFLEMFEEGCHKMGTAIRDRIQERLRG 256 (319)
Q Consensus 226 ~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 256 (319)
.=+...|-+|+.- ..=+.+++.+|..
T Consensus 84 ~EldDLL~ll~Dl-----e~K~~kyk~rLk~ 109 (136)
T PF04871_consen 84 SELDDLLVLLGDL-----EEKRKKYKERLKE 109 (136)
T ss_pred hhHHHHHHHHHhH-----HHHHHHHHHHHHH
Confidence 3356667777642 1224455555553
No 91
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=46.36 E-value=79 Score=24.11 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=35.6
Q ss_pred hHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHH
Q 020938 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIV 156 (319)
Q Consensus 98 t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl 156 (319)
...+|...++++++.|.. |...+..|++.|.-++.. .+-+..++++.++
T Consensus 45 ~~~~l~~~~v~~li~~~i--------G~~~~~~L~~~gI~v~~~--~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICGGI--------GEGAFRALKEAGIKVYQG--AGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHHTTESEEEESCS--------CHHHHHHHHHTTSEEEES--TSSBHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCC--------CHHHHHHHHHCCCEEEEc--CCCCHHHHHHHHh
Confidence 467788899999999873 456788899999543322 5667777777664
No 92
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=46.24 E-value=35 Score=34.61 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=26.7
Q ss_pred CCeEEEEcC--ccCcCChHHHH------HHHHHhhhCCC-CeEEEEecc
Q 020938 19 RPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPN-TYLLVGCCN 58 (319)
Q Consensus 19 r~~rVy~~G--~FDLfH~GHi~------~LeqAKklf~g-d~LIVGV~s 58 (319)
+.+.+|++| ++|+.|+||++ +|.+..++.+. ...|.|++.
T Consensus 8 ~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD 56 (384)
T PRK12418 8 GTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTD 56 (384)
T ss_pred CeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCC
Confidence 456788888 69999999986 45666666532 344555543
No 93
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=44.29 E-value=38 Score=31.25 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=24.5
Q ss_pred CCeEEEEcC--ccCcCChHHHH------HHHHHhhhCCC-CeEEEEec
Q 020938 19 RPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPN-TYLLVGCC 57 (319)
Q Consensus 19 r~~rVy~~G--~FDLfH~GHi~------~LeqAKklf~g-d~LIVGV~ 57 (319)
+...+|+.| .++.+|+||++ .|.+..++.+. ...++|+.
T Consensus 19 ~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~d 66 (213)
T cd00672 19 GLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNIT 66 (213)
T ss_pred CCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecC
Confidence 444577766 57999999974 56666666532 23455553
No 94
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=43.41 E-value=71 Score=35.65 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=21.4
Q ss_pred HHHHhhHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 020938 219 EWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERL 254 (319)
Q Consensus 219 ~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~ 254 (319)
.-..+..++...|+..|..- +-.+++-.-|....
T Consensus 852 ~~~~k~~~L~~~Fi~~~~~~--n~lt~le~~l~~~f 885 (911)
T PF05086_consen 852 RKQDKCEKLKKNFISKLKEL--NKLTKLEEYLISQF 885 (911)
T ss_pred HHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHH
Confidence 34566778888898888652 13455555555544
No 95
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=42.75 E-value=37 Score=37.17 Aligned_cols=42 Identities=26% Similarity=0.455 Sum_probs=29.4
Q ss_pred CCCCeEEEEcC--ccCcCChHHHH------HHHHHhhhCC-CCeEEEEecc
Q 020938 17 SDRPVRVYADG--IYDLFHFGHAR------SLEQAKKSFP-NTYLLVGCCN 58 (319)
Q Consensus 17 ~~r~~rVy~~G--~FDLfH~GHi~------~LeqAKklf~-gd~LIVGV~s 58 (319)
....+.+|++| ++|..|+||++ +|.+..++.+ ....|.|++.
T Consensus 245 ~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD 295 (699)
T PRK14535 245 DPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITD 295 (699)
T ss_pred CCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcc
Confidence 34567899998 69999999986 4666666542 2455666654
No 96
>PLN02946 cysteine-tRNA ligase
Probab=42.70 E-value=36 Score=36.28 Aligned_cols=41 Identities=32% Similarity=0.447 Sum_probs=27.4
Q ss_pred CCCeEEEEcC--ccCcCChHHHH------HHHHHhhhCCC-CeEEEEecc
Q 020938 18 DRPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPN-TYLLVGCCN 58 (319)
Q Consensus 18 ~r~~rVy~~G--~FDLfH~GHi~------~LeqAKklf~g-d~LIVGV~s 58 (319)
...+.+|++| ++|..|+||++ +|.+..+..+. ...|.|++.
T Consensus 78 ~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTD 127 (557)
T PLN02946 78 EGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTD 127 (557)
T ss_pred CCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCC
Confidence 4567789988 69999999985 46666655422 344555543
No 97
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=41.91 E-value=37 Score=34.85 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=24.6
Q ss_pred CCeEEEEcC--ccCcCChHHHH------HHHHHhhhCC-CCeEEEEec
Q 020938 19 RPVRVYADG--IYDLFHFGHAR------SLEQAKKSFP-NTYLLVGCC 57 (319)
Q Consensus 19 r~~rVy~~G--~FDLfH~GHi~------~LeqAKklf~-gd~LIVGV~ 57 (319)
.++.+|++| +++.+|+||++ +|.+..++.+ ....+.|++
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~t 69 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNIT 69 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCC
Confidence 345677666 68999999986 4556665542 234455554
No 98
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=41.75 E-value=2.2e+02 Score=28.54 Aligned_cols=118 Identities=21% Similarity=0.147 Sum_probs=64.2
Q ss_pred EEEEcCc-cCcCChH------HH-HHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHH-HHHHHhc--cCCcccc
Q 020938 22 RVYADGI-YDLFHFG------HA-RSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDER-YESLRHC--KWVDEVI 90 (319)
Q Consensus 22 rVy~~G~-FDLfH~G------Hi-~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER-~e~V~a~--k~VDeVV 90 (319)
.||+++. |-+=+.. ++ ..++.|.+. |..++|.++.= +.....++ ...|..+ -.||.||
T Consensus 29 aVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~---------~~~~~~~~~~~~l~~l~e~GvDavi 97 (347)
T COG0826 29 AVYIGEKEFGLRRRALNFSVEDLAEAVELAHSA--GKKVYVAVNTL---------LHNDELETLERYLDRLVELGVDAVI 97 (347)
T ss_pred EEEeCCcccccccccccCCHHHHHHHHHHHHHc--CCeEEEEeccc---------cccchhhHHHHHHHHHHHcCCCEEE
Confidence 4777766 4433222 22 333444455 35677777542 11122221 2333333 3689999
Q ss_pred cCCCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEcccCCCCChHHHHHHHHHh
Q 020938 91 PDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVKD 158 (319)
Q Consensus 91 i~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~~rT~giSTTdII~RIl~~ 158 (319)
+.+|.. ..++++..||+=+|.+.+-.- ....-.+++++.| .-+.++| -+|..+|+ +|.++
T Consensus 98 v~Dpg~--i~l~~e~~p~l~ih~S~q~~v---~N~~~~~f~~~~G~~rvVl~r--Els~~ei~-~i~~~ 158 (347)
T COG0826 98 VADPGL--IMLARERGPDLPIHVSTQANV---TNAETAKFWKELGAKRVVLPR--ELSLEEIK-EIKEQ 158 (347)
T ss_pred EcCHHH--HHHHHHhCCCCcEEEeeeEec---CCHHHHHHHHHcCCEEEEeCc--cCCHHHHH-HHHHh
Confidence 988853 477888888888877643221 1223345778888 3445566 46777764 34443
No 99
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=41.07 E-value=2.6e+02 Score=24.96 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhhHHHHHH---HhhcCCcccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020938 148 TSDIIMRIVKDYNQYVMR---NLDRGYSRKDLGVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEKIQTVAMHRNEWVENA 224 (319)
Q Consensus 148 TTdII~RIl~~yd~y~~R---nl~rG~~~~~lnv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 224 (319)
+...+.-+...|..|... .+..|+|+..+ ...++-|..|...+.+.+..+...-..|...+..|.++.
T Consensus 35 ~~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~---------~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~ek~ 105 (148)
T COG2882 35 AEEQLKMLSGYRNEYEQNLNEKLKSGVSAAQW---------QNYQQFISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQ 105 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555666667544 66667666533 456777888888888888887777777788888999887
Q ss_pred HH
Q 020938 225 DR 226 (319)
Q Consensus 225 ~~ 226 (319)
.+
T Consensus 106 ~~ 107 (148)
T COG2882 106 IE 107 (148)
T ss_pred HH
Confidence 65
No 100
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=40.40 E-value=39 Score=31.62 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=49.9
Q ss_pred CCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEE-eccCccccccCCCCCCCHHHHHHHHHhcc--C--Cccccc
Q 020938 17 SDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVG-CCNDETTHKFKGKTVMTEDERYESLRHCK--W--VDEVIP 91 (319)
Q Consensus 17 ~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVG-V~sDe~v~~~KGrPV~s~eER~e~V~a~k--~--VDeVVi 91 (319)
+++.++++ =+-+|+|.||..+++.|...+ ++-|+|- +.. ..| .--++.+-|+...+.+. | -+.|++
T Consensus 19 gw~~Vvaf--qtrnPlHraHe~l~~~a~e~~-~~~lll~plvG-----~~k-~~d~~~~~r~~~~~~~~~~y~p~~~v~l 89 (215)
T PF01747_consen 19 GWRRVVAF--QTRNPLHRAHEYLMRRALEKA-GDGLLLHPLVG-----PTK-PGDIPYEVRVRCYEALIDNYFPKNRVLL 89 (215)
T ss_dssp T-SSEEEE--EESS---HHHHHHHHHHHHHH-TSEEEEEEBES-----B-S-TTSCCHHHHHHHHHHHHHHCSSTTGEEE
T ss_pred CCCeEEEE--EeCCCCCHHHHHHHHHHHHHh-cCcEEEEeccC-----CCC-cCCCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 44544444 449999999999999999886 4544433 222 111 23689999999888752 2 245544
Q ss_pred -CCCCC-----chHH-----HHhhcCCcEEEecCCc
Q 020938 92 -DAPWV-----VTQE-----FLDKHQIDFVAHDSLP 116 (319)
Q Consensus 92 -~ap~~-----~t~e-----~L~~~kpD~VvhG~d~ 116 (319)
.-|+. +..- +-+.+++..++.|-+.
T Consensus 90 ~~lp~~mr~aGPrEallhAiirkN~GcTh~IvGrdh 125 (215)
T PF01747_consen 90 SPLPLPMRYAGPREALLHAIIRKNYGCTHFIVGRDH 125 (215)
T ss_dssp EBBESB---SHHHHHHHHHHHHHHTT-SEEEE-TTT
T ss_pred eccCchhcccCcHHHHHHHHHHHHCCCceEEeCCcC
Confidence 11211 1111 2245799999999753
No 101
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=39.96 E-value=1e+02 Score=26.58 Aligned_cols=48 Identities=25% Similarity=0.385 Sum_probs=35.3
Q ss_pred hHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCe-EEEcccCCCCChHHHHHHHH
Q 020938 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGK-FKETKRTDGISTSDIIMRIV 156 (319)
Q Consensus 98 t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~-~~~~~rT~giSTTdII~RIl 156 (319)
.+++|..+++|+|+.+.. |...|..|++.|. ++..+ +-+..+.|+..+
T Consensus 57 ~a~~l~~~gvdvvi~~~i--------G~~a~~~l~~~GIkv~~~~---~~~V~e~i~~~~ 105 (121)
T COG1433 57 IAELLVDEGVDVVIASNI--------GPNAYNALKAAGIKVYVAP---GGTVEEAIKAFL 105 (121)
T ss_pred HHHHHHHcCCCEEEECcc--------CHHHHHHHHHcCcEEEecC---CCCHHHHHHHHh
Confidence 479999999999998763 4567899999994 54434 366677666544
No 102
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=38.96 E-value=93 Score=31.01 Aligned_cols=82 Identities=18% Similarity=0.120 Sum_probs=54.2
Q ss_pred CCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccc-------------cccCCCCCCCHHHHHHHHHhccC
Q 020938 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETT-------------HKFKGKTVMTEDERYESLRHCKW 85 (319)
Q Consensus 19 r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v-------------~~~KGrPV~s~eER~e~V~a~k~ 85 (319)
+|.+|+..|-|= .|--|+.++ -.+++||++--..+ ++..|...+|. ||-.++.+ .
T Consensus 93 ~p~~v~~~Gg~v--------~~~aA~~~~-~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~-e~n~l~~~--~ 160 (396)
T TIGR03492 93 KGDLIVAVGDIV--------PLLFAWLSG-KPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPW-ERWLMRSR--R 160 (396)
T ss_pred cCCEEEEECcHH--------HHHHHHHcC-CCceEEEeeccceeecCCCCCccchhhhccCCCccCHH-HHHHhhch--h
Confidence 455666666442 455555443 45788888765443 34467777777 77666654 5
Q ss_pred CcccccCCCCCchHHHHhhcCCcEEEecC
Q 020938 86 VDEVIPDAPWVVTQEFLDKHQIDFVAHDS 114 (319)
Q Consensus 86 VDeVVi~ap~~~t~e~L~~~kpD~VvhG~ 114 (319)
++.|.+..+ .+.+++.++++.+++.|.
T Consensus 161 a~~v~~~~~--~t~~~l~~~g~k~~~vGn 187 (396)
T TIGR03492 161 CLAVFVRDR--LTARDLRRQGVRASYLGN 187 (396)
T ss_pred hCEEeCCCH--HHHHHHHHCCCeEEEeCc
Confidence 677777554 478899988889888886
No 103
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=38.56 E-value=19 Score=34.03 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=47.8
Q ss_pred CcccccCCCCCchHHHHhhcCCcEEEecCCcccccC--CCcchHHHHHHhcCeEEEcc--c---CCCCChHHHHHHHHHh
Q 020938 86 VDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADAS--GAGKDVYEFVKAAGKFKETK--R---TDGISTSDIIMRIVKD 158 (319)
Q Consensus 86 VDeVVi~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~--~~~~D~y~~lK~~G~~~~~~--r---T~giSTTdII~RIl~~ 158 (319)
|-+||...|- +.+++.++++||-+.|..+..... ..|-|+-+.+++.......+ . -...+++.||.-|+..
T Consensus 8 igeIv~~~P~--aa~VF~~~gIdfCcgg~~tLeeA~~~~~gld~~~ll~eLn~~~~~~~~~~~~~~~~~~~~Lid~I~~~ 85 (224)
T PRK13276 8 VADVVTDYPK--AADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQSA 85 (224)
T ss_pred HHHHHHhCcc--HHHHHHHcCCCcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHhhccccCccChhhCCHHHHHHHHHHH
Confidence 3455555664 568899999998554433222111 12223333343333221111 1 1236889999999999
Q ss_pred hHHHHHHHhhc
Q 020938 159 YNQYVMRNLDR 169 (319)
Q Consensus 159 yd~y~~Rnl~r 169 (319)
|-.|+++++-.
T Consensus 86 hH~~~r~~lp~ 96 (224)
T PRK13276 86 YHEPLREEFKN 96 (224)
T ss_pred HhHHHHHHHHH
Confidence 99999998866
No 104
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=37.78 E-value=1.9e+02 Score=29.32 Aligned_cols=118 Identities=22% Similarity=0.289 Sum_probs=64.8
Q ss_pred HHHHHHhhhCCCCeEEEEecc-CccccccCCCCCCCHHHHHHHHHhccC----Cc-ccccCCCCCc------hHHHHhhc
Q 020938 38 RSLEQAKKSFPNTYLLVGCCN-DETTHKFKGKTVMTEDERYESLRHCKW----VD-EVIPDAPWVV------TQEFLDKH 105 (319)
Q Consensus 38 ~~LeqAKklf~gd~LIVGV~s-De~v~~~KGrPV~s~eER~e~V~a~k~----VD-eVVi~ap~~~------t~e~L~~~ 105 (319)
++|+..++.+ -..+.+||-| ++.+.+.=++. .+.++-.+.++.|+- |. ..|++.|... +.+++.++
T Consensus 288 e~l~~l~~aG-~~~v~iGiES~s~~~L~~~~K~-~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l 365 (472)
T TIGR03471 288 ETLKVMKENG-LRLLLVGYESGDQQILKNIKKG-LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKEL 365 (472)
T ss_pred HHHHHHHHcC-CCEEEEcCCCCCHHHHHHhcCC-CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 3444444443 3689999976 33333221233 344444455554432 11 2344666543 45667778
Q ss_pred CCcEEEecC-CcccccCCCcchHHHHHHhcCeEEE--------------cccCCCCChHHHHHHHHHhhHHH
Q 020938 106 QIDFVAHDS-LPYADASGAGKDVYEFVKAAGKFKE--------------TKRTDGISTSDIIMRIVKDYNQY 162 (319)
Q Consensus 106 kpD~VvhG~-d~y~d~~~~~~D~y~~lK~~G~~~~--------------~~rT~giSTTdII~RIl~~yd~y 162 (319)
+++.+.... .|+ +|...|+.+++.|.+.. +-+++.+|..+|...+..-|..|
T Consensus 366 ~~~~~~~~~l~P~-----PGT~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~~~~~~~~~ 432 (472)
T TIGR03471 366 NPHTIQVSLAAPY-----PGTELYDQAKQNGWITQDSAAMVDDTGHQMAAISYPHLSREEIFDGVERFYKRF 432 (472)
T ss_pred CCCceeeeecccC-----CCcHHHHHHHHCCCcCCchhhcccCCCceeeeecCCCCCHHHHHHHHHHHHHHH
Confidence 888665432 232 46678888888774321 01236778888877776666544
No 105
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=37.32 E-value=51 Score=33.81 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=26.6
Q ss_pred CCCeEEEEcC--ccCcCChHHHH------HHHHHhhhCCCC-eEEEEecc
Q 020938 18 DRPVRVYADG--IYDLFHFGHAR------SLEQAKKSFPNT-YLLVGCCN 58 (319)
Q Consensus 18 ~r~~rVy~~G--~FDLfH~GHi~------~LeqAKklf~gd-~LIVGV~s 58 (319)
...+.+|++| +||..|+||++ +|.+..++.+.+ ..|.|++.
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD 83 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTD 83 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCc
Confidence 4456677777 68999999985 466666665322 34555543
No 106
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=37.18 E-value=14 Score=39.34 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=3.7
Q ss_pred eEEEEeccC
Q 020938 51 YLLVGCCND 59 (319)
Q Consensus 51 ~LIVGV~sD 59 (319)
+||+....|
T Consensus 274 ~LV~qF~kD 282 (615)
T KOG0526|consen 274 FLVLQFGKD 282 (615)
T ss_pred eEEEEeccc
Confidence 344444433
No 107
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=37.16 E-value=55 Score=33.33 Aligned_cols=88 Identities=15% Similarity=0.005 Sum_probs=54.9
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEE-EeccCccccccCCCCCCCHHHHHHHHHhcc---CC-ccccc-CCC
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLV-GCCNDETTHKFKGKTVMTEDERYESLRHCK---WV-DEVIP-DAP 94 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIV-GV~sDe~v~~~KGrPV~s~eER~e~V~a~k---~V-DeVVi-~ap 94 (319)
+.|++.=+-+|+|.||..+.+.|...+ |-|+| -+.. ..| .-=++.+-|+...+++. +. +.|++ .-|
T Consensus 187 ~~VvafqTrnP~HraHe~l~~~a~e~~--d~lll~plvG-----~~k-~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp 258 (391)
T PRK04149 187 KTVVAFQTRNPPHRAHEYLQKCALEIV--DGLLLNPLVG-----ETK-SGDIPAEVRMEAYEALLKNYYPKDRVLLSVTP 258 (391)
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhc--CeEEEecCcC-----CCC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 367778889999999999999999886 43333 2211 111 23688999999888762 22 34432 112
Q ss_pred C-----CchHHH-----HhhcCCcEEEecCCc
Q 020938 95 W-----VVTQEF-----LDKHQIDFVAHDSLP 116 (319)
Q Consensus 95 ~-----~~t~e~-----L~~~kpD~VvhG~d~ 116 (319)
+ +...-+ -+.+++..++.|-|.
T Consensus 259 ~~mryAGPrEa~lhAivrkN~GcTh~IvGrDH 290 (391)
T PRK04149 259 AAMRYAGPREAIFHAIVRKNYGCTHFIVGRDH 290 (391)
T ss_pred chhcccCcHHHHHHHHHHHhCCCCeEEECCCC
Confidence 1 112222 245799999988653
No 108
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=37.14 E-value=20 Score=38.63 Aligned_cols=41 Identities=32% Similarity=0.624 Sum_probs=28.3
Q ss_pred CCCeEEEEcC--ccCcCChHHHH------HHHHHhh-hCC-CCeEEEEecc
Q 020938 18 DRPVRVYADG--IYDLFHFGHAR------SLEQAKK-SFP-NTYLLVGCCN 58 (319)
Q Consensus 18 ~r~~rVy~~G--~FDLfH~GHi~------~LeqAKk-lf~-gd~LIVGV~s 58 (319)
.+.+..|++| +||..|+||++ +|++..+ +++ ....|.+|+.
T Consensus 58 ~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitD 108 (651)
T PTZ00399 58 GRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITD 108 (651)
T ss_pred CCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCC
Confidence 4556778887 69999999986 4677766 552 2455666654
No 109
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=35.93 E-value=59 Score=33.50 Aligned_cols=40 Identities=28% Similarity=0.510 Sum_probs=25.6
Q ss_pred CCeEEEEcC--ccCcCChHHHH------HHHHHhhhCC-CCeEEEEecc
Q 020938 19 RPVRVYADG--IYDLFHFGHAR------SLEQAKKSFP-NTYLLVGCCN 58 (319)
Q Consensus 19 r~~rVy~~G--~FDLfH~GHi~------~LeqAKklf~-gd~LIVGV~s 58 (319)
..+.+|++| ++|.+|+||++ +|.+..++.+ ....+.|++.
T Consensus 20 ~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD 68 (465)
T TIGR00435 20 GKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITD 68 (465)
T ss_pred CcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 345678777 57999999986 3555555542 2345666643
No 110
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=35.82 E-value=17 Score=41.23 Aligned_cols=9 Identities=33% Similarity=0.342 Sum_probs=4.3
Q ss_pred eEEEEeccC
Q 020938 51 YLLVGCCND 59 (319)
Q Consensus 51 ~LIVGV~sD 59 (319)
+|+||.+..
T Consensus 1115 hL~vG~~~G 1123 (1516)
T KOG1832|consen 1115 HLAVGSHAG 1123 (1516)
T ss_pred eEEeeeccc
Confidence 455554443
No 111
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=35.16 E-value=23 Score=41.48 Aligned_cols=6 Identities=67% Similarity=0.805 Sum_probs=2.4
Q ss_pred HHHHHh
Q 020938 249 RIQERL 254 (319)
Q Consensus 249 ~~~~~~ 254 (319)
+||+.|
T Consensus 1682 e~qesl 1687 (3015)
T KOG0943|consen 1682 EIQESL 1687 (3015)
T ss_pred hhhhcc
Confidence 344433
No 112
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=34.91 E-value=24 Score=34.84 Aligned_cols=43 Identities=28% Similarity=0.484 Sum_probs=27.6
Q ss_pred CCCCCeEEEEcC--ccCcCChHHHH------HHHHHhhhCC-CCeEEEEecc
Q 020938 16 PSDRPVRVYADG--IYDLFHFGHAR------SLEQAKKSFP-NTYLLVGCCN 58 (319)
Q Consensus 16 ~~~r~~rVy~~G--~FDLfH~GHi~------~LeqAKklf~-gd~LIVGV~s 58 (319)
-..+.+.+|++| ++|..|+||++ +|++..+.++ ....|..|+.
T Consensus 4 ~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTD 55 (300)
T PF01406_consen 4 LNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITD 55 (300)
T ss_dssp SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-
T ss_pred CCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccc
Confidence 345667899998 69999999986 5566665542 2355677765
No 113
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=34.38 E-value=24 Score=32.43 Aligned_cols=80 Identities=21% Similarity=0.349 Sum_probs=45.8
Q ss_pred ccccCCCCCchHHHHhhcCCcEEEecCCcccccC-CCcchHHHHHHhcCeEEEcc------cCCCCChHHHHHHHHHhhH
Q 020938 88 EVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADAS-GAGKDVYEFVKAAGKFKETK------RTDGISTSDIIMRIVKDYN 160 (319)
Q Consensus 88 eVVi~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~-~~~~D~y~~lK~~G~~~~~~------rT~giSTTdII~RIl~~yd 160 (319)
+||...|. +.+.+.++++|+-+.|..+..... ..|-|+-..+.+......-+ --...|+..||..|+..+.
T Consensus 3 eiv~~~p~--~~~vf~~~gid~cc~g~~~l~~a~~~~g~d~~~~l~~ln~~~~~~~~~~~~~~~~~~~~~Lid~i~~~hH 80 (216)
T TIGR03652 3 EIVTEIPR--AARIFRKYGIDFCCGGNVSLAEACKEKGLDPDEILAELNALQQEPENSGAKDWREAPLSELIDHIVDRHH 80 (216)
T ss_pred HHHHhCcc--HHHHHHHcCCCccCCCcchHHHHHHHcCCCHHHHHHHHHHHHhccccccccChhhCCHHHHHHHHHHHHh
Confidence 34445554 568899999994444432211110 12233333344333221101 1124799999999999999
Q ss_pred HHHHHHhhc
Q 020938 161 QYVMRNLDR 169 (319)
Q Consensus 161 ~y~~Rnl~r 169 (319)
.|+++.+..
T Consensus 81 ~~i~~~l~~ 89 (216)
T TIGR03652 81 EYLREELPE 89 (216)
T ss_pred HHHHHHHHH
Confidence 999998875
No 114
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=33.85 E-value=1.5e+02 Score=24.91 Aligned_cols=33 Identities=33% Similarity=0.518 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020938 182 KEKRLRVNMKLKKLQEKVKQQQERVGEKIQTVA 214 (319)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (319)
|+-+.++...|..||++++....+-.+.+-.+.
T Consensus 2 kk~~s~I~~eI~kLqe~lk~~e~keAERigRiA 34 (98)
T PRK13848 2 KKPSSKIREEIAKLQEQLKQAETREAERIGRIA 34 (98)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888999999999999888877775553
No 115
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.73 E-value=21 Score=37.18 Aligned_cols=29 Identities=38% Similarity=0.683 Sum_probs=23.5
Q ss_pred eEEEEcC--ccCcCChHHHH------HHHHHhhhCCC
Q 020938 21 VRVYADG--IYDLFHFGHAR------SLEQAKKSFPN 49 (319)
Q Consensus 21 ~rVy~~G--~FDLfH~GHi~------~LeqAKklf~g 49 (319)
+.+|++| +||..|+||.+ +|++.....+.
T Consensus 23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy 59 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGY 59 (464)
T ss_pred EEEEecCCccCCccccccCcceehHHHHHHHHHHhCC
Confidence 7899999 69999999974 67787776544
No 116
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=33.08 E-value=2.4e+02 Score=32.65 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=8.5
Q ss_pred HHHHHHhhcCCccc
Q 020938 161 QYVMRNLDRGYSRK 174 (319)
Q Consensus 161 ~y~~Rnl~rG~~~~ 174 (319)
.|+..-|-||.+..
T Consensus 211 ~~li~~Ll~~L~~~ 224 (1233)
T KOG1824|consen 211 VELIEHLLKGLSNR 224 (1233)
T ss_pred HHHHHHHHhccCCC
Confidence 35556666666665
No 117
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=33.03 E-value=18 Score=41.01 Aligned_cols=10 Identities=30% Similarity=0.282 Sum_probs=3.8
Q ss_pred hccCCccccc
Q 020938 82 HCKWVDEVIP 91 (319)
Q Consensus 82 a~k~VDeVVi 91 (319)
+...-|..|+
T Consensus 1237 ~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1237 HFSPCDTLIL 1246 (1516)
T ss_pred ccCCCcceEe
Confidence 3333343333
No 118
>PF11284 DUF3085: Protein of unknown function (DUF3085); InterPro: IPR021436 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=33.01 E-value=72 Score=26.18 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=25.4
Q ss_pred CCCCC-eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEe
Q 020938 16 PSDRP-VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGC 56 (319)
Q Consensus 16 ~~~r~-~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV 56 (319)
++.|+ .++|+.||= |-.. -.....|++.|+||--..-|
T Consensus 23 ~G~r~~~vaYA~gCn-P~~d--~dww~~ar~~~GGDDf~e~i 61 (90)
T PF11284_consen 23 DGERPKLVAYAEGCN-PDTD--DDWWDRARAEFGGDDFAEFI 61 (90)
T ss_pred CCccceEEEEeeccC-CCcC--hhHHHHHHHHcCCcceeEEE
Confidence 55677 789999983 3333 56777888888777544433
No 119
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.93 E-value=59 Score=30.16 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhcCCC
Q 020938 245 AIRDRIQERLRGQGS 259 (319)
Q Consensus 245 ~~~~~~~~~~~~~~~ 259 (319)
++...+...|.+|.+
T Consensus 107 ~~ieells~l~~q~~ 121 (184)
T KOG4032|consen 107 AIIEELLSKLPKQDL 121 (184)
T ss_pred HHHHHHHHHcchhhh
Confidence 444455556655554
No 120
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=32.49 E-value=57 Score=32.75 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=56.4
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCC-eEEEEeccCccccccCCCCCCCHHHHHHHHHhc--cCC--ccccc-CCCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNT-YLLVGCCNDETTHKFKGKTVMTEDERYESLRHC--KWV--DEVIP-DAPW 95 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd-~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~--k~V--DeVVi-~ap~ 95 (319)
+|++.=+-+|+|.||..+++.|...++++ -||.-+..- .| .-=++.+-|++..+++ .|. +.|++ .-|+
T Consensus 158 ~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~plvG~-----~k-~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp~ 231 (353)
T cd00517 158 RVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPLVGW-----TK-PGDVPDEVRMRAYEALLEEYYLPERTVLAILPL 231 (353)
T ss_pred eEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEeccCC-----CC-CCCCCHHHHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 57777899999999999999999876223 233333221 11 2368899999988876 344 66554 2221
Q ss_pred -----CchHHH-----HhhcCCcEEEecCC
Q 020938 96 -----VVTQEF-----LDKHQIDFVAHDSL 115 (319)
Q Consensus 96 -----~~t~e~-----L~~~kpD~VvhG~d 115 (319)
+....+ -+.+++..++.|-|
T Consensus 232 ~mryAGPrEallhAiirkN~GcThfIvGrD 261 (353)
T cd00517 232 PMRYAGPREALWHAIIRKNYGATHFIVGRD 261 (353)
T ss_pred hhcccCcHHHHHHHHHHHhCCCCeEEECCC
Confidence 112222 24579999999865
No 121
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.87 E-value=1.3e+02 Score=30.94 Aligned_cols=141 Identities=22% Similarity=0.300 Sum_probs=70.5
Q ss_pred CeEEEEc--CccCcCChHHHHHHHHHhhhCC-CCeEEEEeccCccccccCCCCCCCHHHHHHHHHh--ccCCcccccCCC
Q 020938 20 PVRVYAD--GIYDLFHFGHARSLEQAKKSFP-NTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH--CKWVDEVIPDAP 94 (319)
Q Consensus 20 ~~rVy~~--G~FDLfH~GHi~~LeqAKklf~-gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a--~k~VDeVVi~ap 94 (319)
|.++|++ =|=+-+|+||+-.|...+.+-. |-..||-| .|.. ..-|-|-...++|..+-+. ..|+..+.-.-.
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLi-gd~t--a~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~ 108 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLI-GDAT--AMIGDPSGKSEERKLLTRETVLENAETIKKQLG 108 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEe-cccc--eecCCCCCCHHHHhhccHHHHHHHHHHHHHHhc
Confidence 5566653 3445689999988888776531 23444444 3422 2234455555665443210 011111110000
Q ss_pred CCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEc-------------ccCCCCChHHHHHHHHHhhHH
Q 020938 95 WVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKET-------------KRTDGISTSDIIMRIVKDYNQ 161 (319)
Q Consensus 95 ~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~-------------~rT~giSTTdII~RIl~~yd~ 161 (319)
.++. +--.+|.+++|.... +....+...|+..-+ .+..++|-+.++--+++-||-
T Consensus 109 -----~~ld--~k~~~v~ns~w~~~~-----~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~~Ef~YpLmQayD~ 176 (401)
T COG0162 109 -----KFLD--NKAEFVNNSDWLKKL-----NYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAYDF 176 (401)
T ss_pred -----ccCC--cceEEEechHHhCcC-----CHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCchhhhhhHHHHHHHH
Confidence 0010 123556666655432 233445555432221 223469999999999999985
Q ss_pred -HHHHHhhcCCcccc
Q 020938 162 -YVMRNLDRGYSRKD 175 (319)
Q Consensus 162 -y~~Rnl~rG~~~~~ 175 (319)
|+...++=|-+-+-
T Consensus 177 ~~L~~dlq~GG~DQ~ 191 (401)
T COG0162 177 VYLNKDLQLGGSDQW 191 (401)
T ss_pred HHHccchhcCChHHH
Confidence 45555555555443
No 122
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=31.60 E-value=76 Score=26.95 Aligned_cols=57 Identities=19% Similarity=0.082 Sum_probs=33.6
Q ss_pred CCeEEEEcCccCcCChHHHHH---HHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhcc
Q 020938 19 RPVRVYADGIYDLFHFGHARS---LEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCK 84 (319)
Q Consensus 19 r~~rVy~~G~FDLfH~GHi~~---LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k 84 (319)
....++..|.+-++|.||... +.+..++++-|.|++.|.. .+.|...+=+++++.++
T Consensus 96 ~~~~~i~~~g~~i~~~Gd~~~~~~~~~~~~~~~vDvl~~p~~g---------~~~~~~~~a~~~~~~l~ 155 (163)
T PF13483_consen 96 NVGYLIEVGGVTIYHAGDTGFPPDDEQLKQLGKVDVLFLPVGG---------PFTMGPEEAAELAERLK 155 (163)
T ss_dssp CEEEEEEETTEEEEE-TT--S---HHHHHHH-S-SEEEEE--T---------TTS--HHHHHHHHHHCT
T ss_pred eEEEEEEeCCCEEEEECCCccCCCHHHHhcccCCCEEEecCCC---------CcccCHHHHHHHHHHcC
Confidence 334566678889999999987 6777777656888888854 34677777666666553
No 123
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=31.44 E-value=35 Score=35.71 Aligned_cols=29 Identities=34% Similarity=0.539 Sum_probs=22.8
Q ss_pred CCeEEEEcCc--cCcCChHHHH------HHHHHhhhC
Q 020938 19 RPVRVYADGI--YDLFHFGHAR------SLEQAKKSF 47 (319)
Q Consensus 19 r~~rVy~~G~--FDLfH~GHi~------~LeqAKklf 47 (319)
..+.+|++|. +|..|+||++ +|.+..++.
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~ 56 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLL 56 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHc
Confidence 4678999996 9999999986 466666665
No 124
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=31.30 E-value=34 Score=38.04 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=4.8
Q ss_pred CCCCccccCCC
Q 020938 257 QGSGKYLLPNG 267 (319)
Q Consensus 257 ~~~~~~~~~~~ 267 (319)
++.-.||...|
T Consensus 865 ~GgW~fL~~~~ 875 (960)
T KOG1189|consen 865 DGGWSFLNVES 875 (960)
T ss_pred cCCeeeecCCC
Confidence 34444444444
No 125
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.49 E-value=49 Score=31.16 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=3.6
Q ss_pred CCCcchhh
Q 020938 282 DDYFDEEE 289 (319)
Q Consensus 282 ~~~~~~~~ 289 (319)
|++|+++|
T Consensus 57 Dsdf~~se 64 (240)
T PF05764_consen 57 DSDFDDSE 64 (240)
T ss_pred ccccCccc
Confidence 44444444
No 126
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=30.09 E-value=1.4e+02 Score=30.68 Aligned_cols=88 Identities=14% Similarity=0.051 Sum_probs=55.5
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc---cC-CcccccC-CCC
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC---KW-VDEVIPD-APW 95 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~---k~-VDeVVi~-ap~ 95 (319)
++|++.=|++++|.||-.+.+.|....+| -|+--|-.. .| .-=++.+-|++...++ -| -|.|++. .||
T Consensus 184 k~vvafQTRNp~HraHEyl~K~Al~~vdg-llv~plVG~-----tk-~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~ 256 (397)
T COG2046 184 KTVVAFQTRNPPHRAHEYLQKRALEKVDG-LLVHPLVGA-----TK-PGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPA 256 (397)
T ss_pred eEEEEEecCCCchHHHHHHHHHHHHhcCc-EEEEeeecc-----cc-CCCchHHHHHHHHHHHHHhCCCCCcEEEEecHH
Confidence 37888999999999999999999988754 232222221 11 2247788888877765 23 4666652 222
Q ss_pred C---------chHHHH-hhcCCcEEEecCC
Q 020938 96 V---------VTQEFL-DKHQIDFVAHDSL 115 (319)
Q Consensus 96 ~---------~t~e~L-~~~kpD~VvhG~d 115 (319)
. +.-.++ +.+++..++.|-|
T Consensus 257 aMRyagPrEa~~HaIIRkNyGcTHfIVGRD 286 (397)
T COG2046 257 AMRYAGPREALLHAIIRKNYGCTHFIVGRD 286 (397)
T ss_pred HhhhcCcHHHHHHHHHHhhcCCeeeeecCC
Confidence 1 112333 3468888888864
No 127
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=29.20 E-value=2.5e+02 Score=30.58 Aligned_cols=43 Identities=26% Similarity=0.412 Sum_probs=33.3
Q ss_pred HHHHHhhHHHHHHHHHHHhccccchhHHHHHHHHHHhhcCCCCccccCCCCCCCC
Q 020938 218 NEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLRGQGSGKYLLPNGEEEED 272 (319)
Q Consensus 218 ~~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (319)
++-.++-+.++..| +.+|+++++.+..+.+..+-|.+|.+.|.
T Consensus 630 rElvekrRqlm~~f------------~~yR~~~~~~~~eek~~r~~lr~~vdtd~ 672 (698)
T KOG2314|consen 630 RELVEKRRQLMEQF------------TEYREKIIEEMAEEKSERIKLRGGVDTDA 672 (698)
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHhhcceeeecCCCCchh
Confidence 45566667777666 56799999999999999988888877643
No 128
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=28.97 E-value=4.3e+02 Score=24.97 Aligned_cols=56 Identities=9% Similarity=0.258 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Q 020938 182 KEKRLRVNMKLKKLQEKVKQQQE----RVGEKIQTVAMHRNEWVENADRWVAGFLEMFEE 237 (319)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~ 237 (319)
.+.+.+|...+++..+.+..+.. +++.-...+..++.+|+..+...+..+-..+..
T Consensus 137 ~~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~ 196 (221)
T PF10376_consen 137 EEEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSE 196 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445666777777777766533 223323466788999999997776665554444
No 129
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=28.48 E-value=3.4e+02 Score=22.35 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=61.3
Q ss_pred cCChHHHHHHHHHhhhCCCCe-EEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchHHHHhhcCCcE
Q 020938 31 LFHFGHARSLEQAKKSFPNTY-LLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQEFLDKHQIDF 109 (319)
Q Consensus 31 LfH~GHi~~LeqAKklf~gd~-LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~ap~~~t~e~L~~~kpD~ 109 (319)
+|......++......+|+.+ +..-|.=...+.- + .+-.....++...-+-+.||.||.+.+. ..|=+
T Consensus 4 ll~~~E~~~~~~L~~~~~~~~~V~~qV~l~~~l~~-~-~~~~~~~~~~~~~~~~~~vDFvv~d~~~---------~~p~~ 72 (126)
T PF10881_consen 4 LLTRQERAFYKALEEALPDDYRVFPQVRLSDLLRP-E-GPSRRERKEAFNRINQKHVDFVVCDKRD---------GRPVA 72 (126)
T ss_pred CCCHHHHHHHHHHHHHhCcCcEEEeCccHHHhhCc-c-CCCchhHHHHHHHhcCCCccEEEEECCC---------CcEEE
Confidence 455566677777777775544 3333433333321 1 1122233333333345678888887553 23444
Q ss_pred EEecCCcccccC-CCcch--HHHHHHhcC-eEEEcccCCCCChHHHHHHHHH
Q 020938 110 VAHDSLPYADAS-GAGKD--VYEFVKAAG-KFKETKRTDGISTSDIIMRIVK 157 (319)
Q Consensus 110 VvhG~d~y~d~~-~~~~D--~y~~lK~~G-~~~~~~rT~giSTTdII~RIl~ 157 (319)
++-=+++..+.. ....| .-+.++.+| .++.++.....+.+.|+..|..
T Consensus 73 vIEld~~~h~~~~~~~rD~~k~~~l~~agiplir~~~~~~~~~~~l~~~l~~ 124 (126)
T PF10881_consen 73 VIELDGSSHDQEKRQERDEFKDRVLKKAGIPLIRISPKDSYSVEELRRDLRE 124 (126)
T ss_pred EEEecCccccchhhHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 443222222210 01122 234778889 6777877788899999887753
No 130
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function.
Probab=27.20 E-value=72 Score=30.82 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccchhHHHHHH
Q 020938 213 VAMHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDR 249 (319)
Q Consensus 213 ~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~ 249 (319)
++..+..|.- -.|+.+|-...+.++..+|.+
T Consensus 99 ~E~~L~~W~~------Y~~~rfyR~~~~~~E~~lR~~ 129 (313)
T PF03353_consen 99 TEEKLWKWEL------YPFIRFYREYLKEFEAELRKK 129 (313)
T ss_pred HHHHHHcCCc------cchhHHHHHHHHHHHHHHHHh
Confidence 3444566763 456677766666666666666
No 131
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=26.72 E-value=2.3e+02 Score=29.88 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=23.9
Q ss_pred EEEEcCcc--CcCChHHHH------HHHHHhhhCCCCeEEEEeccC
Q 020938 22 RVYADGIY--DLFHFGHAR------SLEQAKKSFPNTYLLVGCCND 59 (319)
Q Consensus 22 rVy~~G~F--DLfH~GHi~------~LeqAKklf~gd~LIVGV~sD 59 (319)
.++..|.. .++|+||++ ++.+|...-+.+...|..+.|
T Consensus 20 ~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd 65 (515)
T TIGR00467 20 YTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADN 65 (515)
T ss_pred EEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcC
Confidence 56666654 678999985 556666655445555555444
No 132
>PRK08462 biotin carboxylase; Validated
Probab=25.98 E-value=3.5e+02 Score=27.01 Aligned_cols=90 Identities=8% Similarity=-0.010 Sum_probs=48.8
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccC-C-----
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPD-A----- 93 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~-a----- 93 (319)
+++|++-|. ...=+++++.|++++ -+ +|+|+++..... .++++.|+.+.- .
T Consensus 4 ~k~ili~~~----g~~~~~~~~~~~~~G--~~-~v~~~~~~d~~~----------------~~~~~ad~~~~~~~~~~~~ 60 (445)
T PRK08462 4 IKRILIANR----GEIALRAIRTIQEMG--KE-AIAIYSTADKDA----------------LYLKYADAKICIGGAKSSE 60 (445)
T ss_pred CCEEEEECC----cHHHHHHHHHHHHcC--CC-EEEEechhhcCC----------------chhhhCCEEEEeCCCchhc
Confidence 445555442 123568999999995 44 556655532110 133455665532 1
Q ss_pred CCC---chHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCe
Q 020938 94 PWV---VTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGK 136 (319)
Q Consensus 94 p~~---~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~ 136 (319)
.|. -..++++++++|+|+-|...... ....-+.++..|.
T Consensus 61 ~y~~~~~l~~~~~~~~~D~i~pg~g~lse----~~~~a~~~e~~Gi 102 (445)
T PRK08462 61 SYLNIPAIISAAEIFEADAIFPGYGFLSE----NQNFVEICSHHNI 102 (445)
T ss_pred ccCCHHHHHHHHHHcCCCEEEECCCcccc----CHHHHHHHHHCCC
Confidence 121 13466778899999988632211 1223346777784
No 133
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=25.51 E-value=35 Score=37.85 Aligned_cols=10 Identities=30% Similarity=0.414 Sum_probs=8.3
Q ss_pred CCCCHHHHHH
Q 020938 69 TVMTEDERYE 78 (319)
Q Consensus 69 PV~s~eER~e 78 (319)
|-|+.++|+.
T Consensus 80 ~~mt~Eekml 89 (840)
T PF04147_consen 80 PTMTPEEKML 89 (840)
T ss_pred CCCCHHHHHH
Confidence 7889888876
No 134
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=25.38 E-value=89 Score=31.35 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=22.2
Q ss_pred eEEEEcCc--cCcCChHHHH------HHHHHhhhCCCCeEEEEe
Q 020938 21 VRVYADGI--YDLFHFGHAR------SLEQAKKSFPNTYLLVGC 56 (319)
Q Consensus 21 ~rVy~~G~--FDLfH~GHi~------~LeqAKklf~gd~LIVGV 56 (319)
..+++.|. -.++|+||++ ++.+|.++.+.+...|..
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~ 63 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYS 63 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 35665554 5889999986 566777665333333333
No 135
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=25.20 E-value=2.7e+02 Score=30.04 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHH----------HHHHHHhccCCcccccCCCCCchHHHHh
Q 020938 34 FGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDE----------RYESLRHCKWVDEVIPDAPWVVTQEFLD 103 (319)
Q Consensus 34 ~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eE----------R~e~V~a~k~VDeVVi~ap~~~t~e~L~ 103 (319)
.-..++|+-|++.-|.-++|--=+.|-.....+| .-+..+ -+.++.+++.||+|..-....-....|+
T Consensus 497 mtNnDLlr~vr~~np~AyIiyKPHPdVlsgnR~~--~~dp~~v~~~ad~v~e~~~i~dal~tvDeVhTiTSLaGFeALlR 574 (671)
T COG3563 497 MTNNDLLRTVRARNPDAYIIYKPHPDVLSGNRPG--HSDPDDVARYADQVVEDASILDALRTVDEVHTITSLAGFEALLR 574 (671)
T ss_pred cchhHHHHHHHhcCCCceEeecCChHHhcCCCCC--CCCHHHHHHHHHHHHhcccHHHHHHhhhhhhhcchhHhHHHHHh
Confidence 3456777777776666677776666644322222 122211 1224556788999976433222234444
Q ss_pred hcCCcEEEecCCccccc
Q 020938 104 KHQIDFVAHDSLPYADA 120 (319)
Q Consensus 104 ~~kpD~VvhG~d~y~d~ 120 (319)
. ..+..-|..-|+.|
T Consensus 575 ~--kkVttyG~PFYagW 589 (671)
T COG3563 575 G--KKVTTYGLPFYAGW 589 (671)
T ss_pred c--CCceeccCchhhcc
Confidence 3 34445566556666
No 136
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=24.94 E-value=1.4e+02 Score=24.40 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=8.8
Q ss_pred HhhcCCcEEEecC
Q 020938 102 LDKHQIDFVAHDS 114 (319)
Q Consensus 102 L~~~kpD~VvhG~ 114 (319)
+....+|+|+.|.
T Consensus 86 ~~~~~~D~vv~GE 98 (127)
T cd02068 86 LEEPGVDFVVIGE 98 (127)
T ss_pred hcCCCCCEEEECC
Confidence 4455678888775
No 137
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=24.32 E-value=39 Score=35.93 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=13.4
Q ss_pred cccccCCCCcchhhhhcccCCCCCchh
Q 020938 276 EYYYDEDDYFDEEEEYYYDNDESDDEK 302 (319)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (319)
+-++++|+.+.++-|++||++-+|||.
T Consensus 282 ~a~eesdd~d~e~~E~DYdee~addEE 308 (555)
T KOG2393|consen 282 EAFEESDDGDNEGRELDYDEESADDEE 308 (555)
T ss_pred cccccCCCccccccccccccccCCccc
Confidence 334444444444555556666555543
No 138
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.00 E-value=1.8e+02 Score=30.31 Aligned_cols=133 Identities=17% Similarity=0.285 Sum_probs=72.2
Q ss_pred CeEEEEcCccCc----CChHHHHHHHHHhhhCCCCeEEEEecc-------CccccccCCCCCCCHHHHHHHHHhccC-Cc
Q 020938 20 PVRVYADGIYDL----FHFGHARSLEQAKKSFPNTYLLVGCCN-------DETTHKFKGKTVMTEDERYESLRHCKW-VD 87 (319)
Q Consensus 20 ~~rVy~~G~FDL----fH~GHi~~LeqAKklf~gd~LIVGV~s-------De~v~~~KGrPV~s~eER~e~V~a~k~-VD 87 (319)
|..|||+ ||| +|.||+-.|.-.-.+.-.-+=+|++-. |++=++ .-|+.|-..-|...++++.- .-
T Consensus 63 p~~vYcG--fDPTA~SLHvGNLl~lm~L~hfqr~Gh~~ialIGgATa~vGDPSGrk-tER~~l~~d~~~~N~~~I~~ql~ 139 (467)
T KOG2623|consen 63 PQYVYCG--FDPTAESLHVGNLLALMVLIHFQRAGHRPIALIGGATASVGDPSGRK-TERGQLAEDTREANSRSITQQLC 139 (467)
T ss_pred CceEEec--CCCcHHhhhhcchHHHHHHHHHHHcCCCceEEeccccccccCCCCCc-cchhhhhhHHHHHhHHHHHHHHH
Confidence 5567763 555 899999776643322101123344433 333211 11467877777777776531 12
Q ss_pred ccccCCCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcc-------------cCCCCChHHHHHH
Q 020938 88 EVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETK-------------RTDGISTSDIIMR 154 (319)
Q Consensus 88 eVVi~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~-------------rT~giSTTdII~R 154 (319)
.+.-+.|.-. -+- .....=+++.-.+||.+. ....++.+.|++..+. ...|+|-++.--.
T Consensus 140 ~if~n~~~~~-~~~-~s~g~~~ivnN~dW~~d~-----~llDFLa~vGrh~RvgsMLar~SV~~RLes~~GlSftEFtYQ 212 (467)
T KOG2623|consen 140 KIFENHPEYY-RDG-SSQGKYIIVNNSDWYKDI-----KLLDFLAEVGRHFRVGSMLARDSVKSRLESPNGLSFTEFTYQ 212 (467)
T ss_pred HHHhcChhhh-cCC-cccCceeEeechHHhhhc-----hHHHHHHHhchhhhHHHHHHHHHHHHhhcCCCCCcHHHHHHH
Confidence 2222333000 000 001333455566777653 2556788888765532 2469999999999
Q ss_pred HHHhhHHH
Q 020938 155 IVKDYNQY 162 (319)
Q Consensus 155 Il~~yd~y 162 (319)
+++-||=|
T Consensus 213 ~lQAYDfy 220 (467)
T KOG2623|consen 213 LLQAYDFY 220 (467)
T ss_pred HHHHHhHH
Confidence 99998854
No 139
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.15 E-value=1.3e+02 Score=34.35 Aligned_cols=12 Identities=50% Similarity=0.991 Sum_probs=4.9
Q ss_pred CCCccccccCCC
Q 020938 272 DDDEEYYYDEDD 283 (319)
Q Consensus 272 ~~~~~~~~~~~~ 283 (319)
++.+|++-+|++
T Consensus 897 ~~~~e~~~~d~d 908 (1010)
T KOG1991|consen 897 DDEEEDFIDDED 908 (1010)
T ss_pred CcchhhccCccc
Confidence 333444444433
No 140
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=22.59 E-value=60 Score=30.77 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=48.6
Q ss_pred cccCCCCCchHHHHhhcCCcEEEecCCccccc-CCCcchHHHHHHhcCeEEEcc----cCCCCChHHHHHHHHHhhHHHH
Q 020938 89 VIPDAPWVVTQEFLDKHQIDFVAHDSLPYADA-SGAGKDVYEFVKAAGKFKETK----RTDGISTSDIIMRIVKDYNQYV 163 (319)
Q Consensus 89 VVi~ap~~~t~e~L~~~kpD~VvhG~d~y~d~-~~~~~D~y~~lK~~G~~~~~~----rT~giSTTdII~RIl~~yd~y~ 163 (319)
+++.-|- ..+++++|++||-+-|.-....+ ...+-++-+..++...+...+ .-...+.|+||.-|+..|-.+.
T Consensus 11 la~~iP~--A~~iFr~y~iDFCCGG~~~L~~Aa~~k~l~~~~i~a~L~~l~~~~~~~~dw~~~~~s~lIdhIi~ryH~~h 88 (221)
T COG2846 11 LAISIPR--AAEIFRSYDIDFCCGGKVTLERAAAEKGLDIDEIEARLNALQQEPTPSKDWATAPLSELIDHIIVRYHERH 88 (221)
T ss_pred HHHhCcc--HHHHHHHcCCceecCChHHHHHHHHHcCCCHHHHHHHHHHHHhccCcccCcccCCHHHHHHHHHHHHHHHH
Confidence 3344554 46899999999877665221111 012223333333433222222 3457899999999999999999
Q ss_pred HHHhhc
Q 020938 164 MRNLDR 169 (319)
Q Consensus 164 ~Rnl~r 169 (319)
+.+|..
T Consensus 89 Reqlpe 94 (221)
T COG2846 89 REQLPE 94 (221)
T ss_pred HHHHHH
Confidence 888876
No 141
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=22.33 E-value=42 Score=37.26 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=7.1
Q ss_pred CCChHHHHHHHHH
Q 020938 145 GISTSDIIMRIVK 157 (319)
Q Consensus 145 giSTTdII~RIl~ 157 (319)
.-|--+|+.-|+.
T Consensus 179 ~kskkEvm~EiIa 191 (840)
T PF04147_consen 179 KKSKKEVMEEIIA 191 (840)
T ss_pred ccCHHHHHHHHHH
Confidence 3455666665543
No 142
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.25 E-value=2.9e+02 Score=21.26 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=29.7
Q ss_pred hHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCe-EEEcccCCCCChHHHHH
Q 020938 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGK-FKETKRTDGISTSDIIM 153 (319)
Q Consensus 98 t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~-~~~~~rT~giSTTdII~ 153 (319)
..++|..+++++|+.+.. |...+..+++.|. ++..+. -+..+++.
T Consensus 55 ~~~~l~~~~v~~vi~~~i--------G~~~~~~l~~~gI~v~~~~~---~~i~~vl~ 100 (103)
T cd00851 55 AAEFLADEGVDVVIVGGI--------GPRALNKLRNAGIKVYKGAE---GTVEEAIE 100 (103)
T ss_pred HHHHHHHcCCCEEEeCCC--------CcCHHHHHHHCCCEEEEcCC---CCHHHHHH
Confidence 467788899999998763 3446888999984 443332 34455543
No 143
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.07 E-value=78 Score=32.96 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=8.6
Q ss_pred HHHHHHHhhcCCCCcc
Q 020938 247 RDRIQERLRGQGSGKY 262 (319)
Q Consensus 247 ~~~~~~~~~~~~~~~~ 262 (319)
.+-+..+|+.+.+...
T Consensus 237 td~~~~~l~~~~~~tp 252 (514)
T KOG3130|consen 237 TDSHTPCLKDVASSTP 252 (514)
T ss_pred hcccchHhhcCCCcCc
Confidence 3445556666555544
No 144
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=21.89 E-value=5.2e+02 Score=22.29 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=59.2
Q ss_pred cCCcccccCCCCCchHH-HHhhcCC-cEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHhhHH
Q 020938 84 KWVDEVIPDAPWVVTQE-FLDKHQI-DFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQ 161 (319)
Q Consensus 84 k~VDeVVi~ap~~~t~e-~L~~~kp-D~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~yd~ 161 (319)
.++..|+++....-... ++...++ |+||-.+.+ +...+-..|-++..||..-++...|-.++...|-.
T Consensus 27 ~~~~~i~Vd~g~DaaD~~I~~~~~~gDiVITqDig----------LA~~~l~Kga~vl~~rG~~yt~~nI~~~L~~R~~~ 96 (130)
T PF02639_consen 27 PYVEMIVVDSGFDAADFYIVNHAKPGDIVITQDIG----------LASLLLAKGAYVLNPRGKEYTKENIDELLAMRHLM 96 (130)
T ss_pred CCeEEEEECCCCChHHHHHHHcCCCCCEEEECCHH----------HHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 46667777544333333 3344444 677765533 23446667878888999999999998887666544
Q ss_pred HHHHHhhcCCcccccCcchhhhhHHHHHHHHHHH
Q 020938 162 YVMRNLDRGYSRKDLGVSYVKEKRLRVNMKLKKL 195 (319)
Q Consensus 162 y~~Rnl~rG~~~~~lnv~~~~~~~~~~~~~~~~~ 195 (319)
. .+++.-.+..-.=.|.++..-+|.+.+..+
T Consensus 97 ~---~lR~~G~~~~gpk~~~~~d~~~F~~~L~~~ 127 (130)
T PF02639_consen 97 A---KLRRAGKRTKGPKKFTKKDRQRFANALDRL 127 (130)
T ss_pred H---HHHHhCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3 333322222222367777777777666654
No 145
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=21.88 E-value=1.8e+02 Score=27.59 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=22.7
Q ss_pred CcCChHHHHHHHHHhhhCC-CCeEEEEeccCcc
Q 020938 30 DLFHFGHARSLEQAKKSFP-NTYLLVGCCNDET 61 (319)
Q Consensus 30 DLfH~GHi~~LeqAKklf~-gd~LIVGV~sDe~ 61 (319)
+.+|+||+-.+..++.+-. |..++|-|.....
T Consensus 12 ~~lHLG~~~~~~~~~~lq~~g~~~~ilI~D~~a 44 (269)
T cd00805 12 PSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATA 44 (269)
T ss_pred CcccHHHHHHHHHHHHHHHCCCeEEEEECCCee
Confidence 5799999987777776533 4567777776543
No 146
>PRK15452 putative protease; Provisional
Probab=21.76 E-value=9.1e+02 Score=25.01 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=37.0
Q ss_pred CCcccccCCCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeE-EEcccCCCCChHHH
Q 020938 85 WVDEVIPDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKF-KETKRTDGISTSDI 151 (319)
Q Consensus 85 ~VDeVVi~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~-~~~~rT~giSTTdI 151 (319)
.||.|++.+|-. ..++++..|+.-+|++.+..-. ...-.+++++.|.- +.+.| -+|-.+|
T Consensus 89 gvDgvIV~d~G~--l~~~ke~~p~l~ih~stqlni~---N~~a~~f~~~lG~~rvvLSr--ELsl~EI 149 (443)
T PRK15452 89 KPDALIMSDPGL--IMMVREHFPEMPIHLSVQANAV---NWATVKFWQQMGLTRVILSR--ELSLEEI 149 (443)
T ss_pred CCCEEEEcCHHH--HHHHHHhCCCCeEEEEecccCC---CHHHHHHHHHCCCcEEEECC--cCCHHHH
Confidence 499999988753 5778888899889887433211 11234566777732 22343 4566665
No 147
>PRK13753 dihydropteroate synthase; Provisional
Probab=21.71 E-value=7.6e+02 Score=24.13 Aligned_cols=164 Identities=20% Similarity=0.159 Sum_probs=89.8
Q ss_pred EEEcCccCcCChHH-----HHHHHHHhhhC--CCCeEEEEeccCccccccCC-CCCCCHHHHH---HHHHhccCCcccc-
Q 020938 23 VYADGIYDLFHFGH-----ARSLEQAKKSF--PNTYLLVGCCNDETTHKFKG-KTVMTEDERY---ESLRHCKWVDEVI- 90 (319)
Q Consensus 23 Vy~~G~FDLfH~GH-----i~~LeqAKklf--~gd~LIVGV~sDe~v~~~KG-rPV~s~eER~---e~V~a~k~VDeVV- 90 (319)
++++=|-|-|.-|- -..+++|..+. +.|.+=||-.|.. .| .||-.++|.. ..|+.++-.+-.|
T Consensus 6 GIlNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTr-----Pga~~vs~eeE~~Rv~pvI~~l~~~~~~IS 80 (279)
T PRK13753 6 GILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASH-----PDARPVSPADEIRRIAPLLDALSDQMHRVS 80 (279)
T ss_pred EEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCC-----CCCCcCCHHHHHHHHHHHHHHHHhCCCcEE
Confidence 34445555555444 46777877763 2477888887752 23 3677777776 3455554322112
Q ss_pred cCCCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcC--eEEEccc-CCC-------CChHHHHHHHHHhhH
Q 020938 91 PDAPWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG--KFKETKR-TDG-------ISTSDIIMRIVKDYN 160 (319)
Q Consensus 91 i~ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G--~~~~~~r-T~g-------iSTTdII~RIl~~yd 160 (319)
++....-..+..-+.++|+|= +-.- .......+.+.+.| -++-.-+ +++ ....+++..|..-+.
T Consensus 81 IDT~~~~va~~al~aGadiIN-DVsg-----~~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~ 154 (279)
T PRK13753 81 IDSFQPETQRYALKRGVGYLN-DIQG-----FPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFE 154 (279)
T ss_pred EECCCHHHHHHHHHcCCCEEE-eCCC-----CCchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHH
Confidence 222221112223346788652 1100 01123455666664 3332222 122 123678888888888
Q ss_pred HHHHHHhhcCCccc----ccCcchhh----hhHHHHHHHHHHHHH
Q 020938 161 QYVMRNLDRGYSRK----DLGVSYVK----EKRLRVNMKLKKLQE 197 (319)
Q Consensus 161 ~y~~Rnl~rG~~~~----~lnv~~~~----~~~~~~~~~~~~~~~ 197 (319)
+-+.+-++-|+.+. +-++||.| +..+.+=+++.+|+.
T Consensus 155 ~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~~ 199 (279)
T PRK13753 155 ARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKS 199 (279)
T ss_pred HHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHHH
Confidence 88888999999875 45899955 456666666666543
No 148
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=21.71 E-value=81 Score=26.17 Aligned_cols=46 Identities=28% Similarity=0.482 Sum_probs=17.4
Q ss_pred CeEEEEeccCccccccC---CCCCCCHHHHHHHHHhccCCcccccCCCC
Q 020938 50 TYLLVGCCNDETTHKFK---GKTVMTEDERYESLRHCKWVDEVIPDAPW 95 (319)
Q Consensus 50 d~LIVGV~sDe~v~~~K---GrPV~s~eER~e~V~a~k~VDeVVi~ap~ 95 (319)
.+-+||+.+|......+ |-|+...-+.+.-+..-..||+|++..|+
T Consensus 103 g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~ 151 (175)
T PF13727_consen 103 GYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPW 151 (175)
T ss_dssp SEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TT
T ss_pred CceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCc
Confidence 36788998875432211 22444333333333333345555554443
No 149
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=21.33 E-value=53 Score=35.91 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=4.6
Q ss_pred CCCCCccccc
Q 020938 270 EEDDDEEYYY 279 (319)
Q Consensus 270 ~~~~~~~~~~ 279 (319)
++||||+|++
T Consensus 51 ~~~~~~~~~~ 60 (742)
T TIGR01299 51 DEDDDDDFPA 60 (742)
T ss_pred ccccccCCCC
Confidence 3344555533
No 150
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.14 E-value=1.3e+02 Score=28.07 Aligned_cols=128 Identities=17% Similarity=0.194 Sum_probs=72.0
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCcc--ccccCCCCCCCHHHHHHHHHhccCCccccc-CCCCC
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDET--THKFKGKTVMTEDERYESLRHCKWVDEVIP-DAPWV 96 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~--v~~~KGrPV~s~eER~e~V~a~k~VDeVVi-~ap~~ 96 (319)
.+.|++-|.=|-+..||+-+--..-..- |.++-+|+.+... ++-..|+|-++-.|-+-+-.....++.+-. -.||.
T Consensus 40 ~~~vvaf~~kdgik~~~~~~~vNg~~v~-g~~~~~Gl~~~~~ypv~~~f~~p~~ttNEkL~las~fhsl~aI~~qlsp~~ 118 (199)
T KOG3369|consen 40 LKVVVAFGSKDGIKVGHLVQAVNGENVN-GYILYDGLSSPRNYPVNGKFGRPKLTTNEKLILASSFHSLFAISTQLSPEP 118 (199)
T ss_pred cceeEEeecccccchhheeeeecccccc-cceecccccCccccccccccCCCcccccchhhhhhhhcchhheeeccCCCC
Confidence 3468888999999999975433333332 4788999877432 222235788888887665445555554433 23442
Q ss_pred chHHHHhhcCCcEEEecCC---cccccCCCcchHHHHHHhcC-eEEEcccCCCCChHHHHHHHHHhhHHHHHHHh
Q 020938 97 VTQEFLDKHQIDFVAHDSL---PYADASGAGKDVYEFVKAAG-KFKETKRTDGISTSDIIMRIVKDYNQYVMRNL 167 (319)
Q Consensus 97 ~t~e~L~~~kpD~VvhG~d---~y~d~~~~~~D~y~~lK~~G-~~~~~~rT~giSTTdII~RIl~~yd~y~~Rnl 167 (319)
- .-++.++..+.- .|... -| +|+.+-...-.-...+.++|-.-|.+|+.+|-
T Consensus 119 k------sSGie~LetdtF~l~~~QTl-------------TG~KFVvis~~~~~~aD~lLrKiYelYsDyvlKNP 174 (199)
T KOG3369|consen 119 K------SSGIEVLETDTFTLHIFQTL-------------TGTKFVVIAEPGTQGADSLLRKIYELYSDYVLKNP 174 (199)
T ss_pred C------CCceEEEEeccEEEEEEEcc-------------CCcEEEEEecCCchhHHHHHHHHHHHHHHHhhcCC
Confidence 1 012222221110 01111 24 67666433334456677889899999998763
No 151
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.07 E-value=88 Score=29.30 Aligned_cols=14 Identities=7% Similarity=0.489 Sum_probs=5.8
Q ss_pred ccCCCCCCCCCCcc
Q 020938 263 LLPNGEEEEDDDEE 276 (319)
Q Consensus 263 ~~~~~~~~~~~~~~ 276 (319)
++..|-+-+++.||
T Consensus 182 ~i~~~~~~de~~DD 195 (227)
T KOG3241|consen 182 IIGHGSVPDEAHDD 195 (227)
T ss_pred hcccCCCCcccccc
Confidence 34444444443333
No 152
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.00 E-value=50 Score=37.53 Aligned_cols=7 Identities=0% Similarity=0.135 Sum_probs=2.7
Q ss_pred hHHHHHH
Q 020938 148 TSDIIMR 154 (319)
Q Consensus 148 TTdII~R 154 (319)
.-.|+.-
T Consensus 748 a~kLle~ 754 (1010)
T KOG1991|consen 748 ACKLLEV 754 (1010)
T ss_pred HHHHHHH
Confidence 3334443
No 153
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=20.91 E-value=8.7e+02 Score=24.51 Aligned_cols=51 Identities=18% Similarity=0.374 Sum_probs=37.3
Q ss_pred hHHHHHHHhhcCCccccc----CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020938 159 YNQYVMRNLDRGYSRKDL----GVSYVKEKRLRVNMKLKKLQEKVKQQQERVGEK 209 (319)
Q Consensus 159 yd~y~~Rnl~rG~~~~~l----nv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (319)
|+.-..+.|++|-+...- +-++....-+-+++.+++|..++.+....+...
T Consensus 147 YD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~ 201 (323)
T PF08537_consen 147 YDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEIT 201 (323)
T ss_pred hHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788999999887665 445555666778888888888888776655433
No 154
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=20.71 E-value=33 Score=37.61 Aligned_cols=14 Identities=14% Similarity=0.575 Sum_probs=0.0
Q ss_pred HHhhcCCcccccCc
Q 020938 165 RNLDRGYSRKDLGV 178 (319)
Q Consensus 165 Rnl~rG~~~~~lnv 178 (319)
+-+.+--....|++
T Consensus 303 ~~v~~~n~~~~l~l 316 (713)
T PF03344_consen 303 QCVEKANEKHNLGL 316 (713)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 34444333344433
No 155
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=20.30 E-value=5.5e+02 Score=21.90 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccchhHHHHHHHHHHhhc
Q 020938 183 EKRLRVNMKLKKLQEKVKQQQERVGEKIQTVAMHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLRG 256 (319)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 256 (319)
.|.=+|......|+..+..+..+..+....+..+.+.+.+-.+ +.+..++-+.++....++|+.-....-..
T Consensus 47 ~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGD--veNWa~~iE~Dl~~i~~~L~~v~~~~~~~ 118 (121)
T PF06320_consen 47 ENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGD--VENWAEMIERDLRVIEETLRYVYEGSEKE 118 (121)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3333344445555555555555444444444444455554322 55567777777777777766544444333
Done!