Query 020938
Match_columns 319
No_of_seqs 312 out of 1726
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hl4_A Choline-phosphate cytid 100.0 6.7E-47 2.3E-51 349.3 14.4 168 13-182 69-236 (236)
2 3elb_A Ethanolamine-phosphate 100.0 1.2E-34 4E-39 279.5 13.3 147 15-162 193-341 (341)
3 3elb_A Ethanolamine-phosphate 100.0 2.7E-32 9.2E-37 263.0 14.2 140 17-160 4-143 (341)
4 1coz_A Protein (glycerol-3-pho 99.9 6.6E-23 2.2E-27 168.3 9.2 126 20-156 1-127 (129)
5 2b7l_A Glycerol-3-phosphate cy 99.9 8.6E-23 2.9E-27 168.5 9.7 128 20-158 1-129 (132)
6 3glv_A Lipopolysaccharide core 99.9 8.5E-22 2.9E-26 166.4 11.0 134 20-160 2-140 (143)
7 4f3r_A Phosphopantetheine aden 99.8 1.7E-19 5.7E-24 157.0 11.2 130 20-157 5-140 (162)
8 3nv7_A Phosphopantetheine aden 99.8 6E-20 2.1E-24 159.4 8.2 129 20-156 2-137 (157)
9 3k9w_A Phosphopantetheine aden 99.8 3.2E-18 1.1E-22 152.4 11.7 130 20-157 22-158 (187)
10 3nbk_A Phosphopantetheine aden 99.7 2.7E-17 9.1E-22 145.9 13.7 132 16-156 17-155 (177)
11 3f3m_A Phosphopantetheine aden 99.7 3.2E-17 1.1E-21 143.6 13.1 129 20-157 3-139 (168)
12 1vlh_A Phosphopantetheine aden 99.7 3.7E-17 1.3E-21 142.4 12.4 126 21-157 13-148 (173)
13 3nd5_A Phosphopantetheine aden 99.7 1.2E-17 4.2E-22 146.6 9.0 127 20-157 2-139 (171)
14 1qjc_A Phosphopantetheine aden 99.7 4.6E-16 1.6E-20 130.8 12.9 127 20-157 1-137 (158)
15 1o6b_A Phosphopantetheine aden 99.6 6.8E-15 2.3E-19 125.8 12.4 129 20-157 2-138 (169)
16 1od6_A PPAT, phosphopantethein 99.6 9.9E-15 3.4E-19 123.1 12.3 126 23-157 3-138 (160)
17 2qtr_A Nicotinate (nicotinamid 99.5 1.1E-14 3.8E-19 125.9 8.4 132 21-157 3-165 (189)
18 1kam_A Deamido-NAD(+), nicotin 99.5 6.9E-14 2.4E-18 122.4 13.3 133 21-158 8-171 (194)
19 3do8_A Phosphopantetheine aden 99.5 2.3E-15 7.8E-20 129.1 2.7 127 22-158 2-143 (148)
20 1yum_A 'probable nicotinate-nu 99.5 1E-12 3.5E-17 120.3 14.9 93 20-115 23-129 (242)
21 1k4m_A NAMN adenylyltransferas 99.4 1.1E-12 3.7E-17 116.5 12.8 90 23-115 6-109 (213)
22 1mrz_A Riboflavin kinase/FMN a 99.4 4.4E-13 1.5E-17 126.7 9.2 130 23-158 2-147 (293)
23 3h05_A Uncharacterized protein 99.4 5.8E-13 2E-17 117.1 8.6 130 20-158 2-149 (177)
24 2h29_A Probable nicotinate-nuc 99.4 2E-12 6.9E-17 112.7 9.4 132 21-157 3-165 (189)
25 1lw7_A Transcriptional regulat 99.3 7E-12 2.4E-16 118.7 12.7 125 20-155 2-154 (365)
26 1f9a_A Hypothetical protein MJ 99.3 2.9E-11 1E-15 103.8 14.3 121 22-157 2-135 (168)
27 1ej2_A Nicotinamide mononucleo 99.3 1.3E-11 4.6E-16 107.1 12.0 123 21-157 4-141 (181)
28 2x0k_A Riboflavin biosynthesis 99.3 3.2E-11 1.1E-15 115.9 12.4 144 22-167 17-183 (338)
29 2qjo_A Bifunctional NMN adenyl 99.2 4.5E-11 1.5E-15 110.5 8.8 126 20-157 7-150 (341)
30 3op1_A Macrolide-efflux protei 99.2 8.2E-11 2.8E-15 112.2 9.9 147 22-172 22-191 (308)
31 1kqn_A Nmnat, nicotinamide mon 99.1 8.8E-11 3E-15 109.8 8.3 85 18-103 6-100 (279)
32 1nup_A FKSG76; NAD biosynthesi 99.1 2.7E-10 9.3E-15 104.3 8.4 87 19-105 5-100 (252)
33 2qjt_B Nicotinamide-nucleotide 99.0 3.6E-10 1.2E-14 105.4 5.5 59 20-82 7-65 (352)
34 3gmi_A UPF0348 protein MJ0951; 98.6 1.6E-07 5.4E-12 91.2 9.9 145 20-171 52-264 (357)
35 2ejc_A Pantoate--beta-alanine 98.5 2.7E-07 9.3E-12 87.0 8.9 70 20-93 22-94 (280)
36 1v8f_A Pantoate-beta-alanine l 97.2 0.0012 4.1E-08 62.2 9.2 66 21-92 20-88 (276)
37 1jhd_A Sulfate adenylyltransfe 97.2 0.0017 6E-08 63.7 10.2 91 22-117 194-299 (396)
38 3ag6_A Pantothenate synthetase 96.4 0.011 3.9E-07 55.7 9.1 64 23-92 28-94 (283)
39 3cov_A Pantothenate synthetase 96.1 0.011 3.9E-07 56.2 7.7 63 27-92 39-105 (301)
40 1pei_A PEPC22; transferase, nu 96.1 0.0014 4.7E-08 41.3 0.7 19 215-233 8-26 (26)
41 3q12_A Pantoate--beta-alanine 95.1 0.025 8.6E-07 53.6 5.8 65 21-92 26-96 (287)
42 3inn_A Pantothenate synthetase 95.1 0.073 2.5E-06 51.0 9.0 66 21-92 44-114 (314)
43 1v47_A ATP sulfurylase; produc 95.0 0.038 1.3E-06 53.3 6.6 89 22-117 157-260 (349)
44 3uk2_A Pantothenate synthetase 94.0 0.083 2.8E-06 49.9 6.3 67 23-92 24-93 (283)
45 3mxt_A Pantothenate synthetase 93.1 0.18 6.1E-06 47.7 7.0 60 25-92 32-95 (285)
46 3n8h_A Pantothenate synthetase 89.7 0.28 9.4E-06 46.0 4.3 60 29-92 32-95 (264)
47 1g8f_A Sulfate adenylyltransfe 84.2 10 0.00035 38.1 12.4 88 22-116 190-292 (511)
48 1peh_A Pepnh1; transferase, nu 82.2 0.01 3.4E-07 39.5 -6.8 34 181-214 1-34 (35)
49 3viq_A SWI5-dependent recombin 71.1 19 0.00067 29.8 8.3 50 181-230 5-58 (122)
50 3rc1_A Sugar 3-ketoreductase; 61.6 56 0.0019 30.0 10.4 50 4-58 11-60 (350)
51 2gks_A Bifunctional SAT/APS ki 56.7 17 0.0006 36.4 6.4 87 22-115 165-267 (546)
52 1r6x_A ATP:sulfate adenylyltra 55.8 9.8 0.00033 37.3 4.3 88 22-116 189-291 (395)
53 1m8p_A Sulfate adenylyltransfe 48.3 16 0.00055 36.9 4.6 87 22-115 192-293 (573)
54 1li5_A Cysrs, cysteinyl-tRNA s 47.6 9.5 0.00033 37.5 2.8 21 18-38 20-42 (461)
55 3c8z_A Cysteinyl-tRNA syntheta 46.6 10 0.00034 36.6 2.7 39 18-56 37-84 (414)
56 3tqo_A Cysteinyl-tRNA syntheta 45.4 11 0.00036 37.6 2.7 30 18-47 23-60 (462)
57 1lyp_A CAP18; lipopolysacchari 45.2 39 0.0013 21.6 4.4 24 189-212 3-26 (32)
58 2ayu_A Nucleosome assembly pro 41.6 0.91 3.1E-05 44.9 -5.6 12 12-23 17-28 (417)
59 1deq_A Fibrinogen (alpha chain 38.5 1.3E+02 0.0046 29.5 9.1 43 181-223 58-100 (390)
60 2zd7_A VPS75, vacuolar protein 37.8 3.5 0.00012 38.1 -1.9 10 229-238 177-186 (264)
61 3nkl_A UDP-D-quinovosamine 4-d 24.6 2E+02 0.0067 22.1 6.6 26 35-61 14-39 (141)
62 3ehd_A Uncharacterized conserv 23.6 2.1E+02 0.0071 24.3 6.9 25 18-44 2-26 (162)
63 3h99_A Methionyl-tRNA syntheta 23.4 40 0.0014 33.5 2.7 22 18-39 16-40 (560)
64 4dlp_A Aminoacyl-tRNA syntheta 23.4 35 0.0012 33.7 2.2 10 30-39 38-47 (536)
65 2zue_A Arginyl-tRNA synthetase 23.4 45 0.0015 34.1 3.1 32 16-47 116-155 (629)
66 4fp9_B Mterf domain-containing 23.3 17 0.00059 34.5 0.0 7 229-235 268-274 (335)
67 3sp1_A Cysteinyl-tRNA syntheta 22.9 98 0.0033 31.1 5.4 37 20-56 42-87 (501)
68 1f7u_A Arginyl-tRNA synthetase 22.8 43 0.0015 34.2 2.8 31 17-47 141-179 (607)
69 2cyb_A Tyrosyl-tRNA synthetase 22.2 69 0.0024 29.7 3.9 39 19-59 31-73 (323)
70 3ghg_A Fibrinogen alpha chain; 21.4 1.8E+02 0.006 29.9 6.8 68 179-251 53-120 (562)
71 2cya_A Tyrosyl-tRNA synthetase 21.2 67 0.0023 30.6 3.6 39 19-59 34-76 (364)
72 2pid_A Tyrosyl-tRNA synthetase 20.2 2E+02 0.007 27.2 6.8 63 17-79 43-113 (356)
73 3kfl_A Methionyl-tRNA syntheta 20.1 36 0.0012 34.0 1.5 9 30-38 39-47 (564)
74 2d5b_A Methionyl-tRNA syntheta 20.0 59 0.002 31.4 3.1 18 30-47 16-39 (500)
No 1
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=100.00 E-value=6.7e-47 Score=349.25 Aligned_cols=168 Identities=62% Similarity=1.119 Sum_probs=138.3
Q ss_pred CCCCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccC
Q 020938 13 DTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 13 ~~~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
...|..+|++||++|+||+||.||+++|++|+++|+|++|||||++|+.+++.||.|+|+.+||+++|++|+|||+|+++
T Consensus 69 ~~~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg~pi~s~eER~e~v~~~k~VD~Vvv~ 148 (236)
T 3hl4_A 69 RGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRN 148 (236)
T ss_dssp HCCCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCHHHHHHHHHTBTTCSEEESS
T ss_pred cCCCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCCCCCCCHHHHHHHHHHhCCCCeEEEC
Confidence 45677899999999999999999999999999999889999999999999888999999999999999999999999999
Q ss_pred CCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHhhHHHHHHHhhcCCc
Q 020938 93 APWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYS 172 (319)
Q Consensus 93 ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~yd~y~~Rnl~rG~~ 172 (319)
+||.++.+|+++++||+|+||++++... .+.+.|+.++++|++++++||+++|||+|+.||+++|+.|++||++|||+
T Consensus 149 ~p~~l~~d~i~~~~~d~Vv~GDd~~~~~--~~~d~y~~lk~~G~~~~v~rt~giSTT~Ii~RI~~~~~~y~~R~l~rg~~ 226 (236)
T 3hl4_A 149 APWTLTPEFLAEHRIDFVAHDDIPYSSA--GSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYT 226 (236)
T ss_dssp CCSSCCHHHHHHTTCCEEEEESSCCCCS--SCSCTTHHHHHTTCEEEECCCTTCCHHHHHHHHHHHHHC-----------
T ss_pred CcCcCcHHHHHHcCCCEEEECCccccCC--CchhHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHhHHHHHHHHhcCCCC
Confidence 9999999999999999999999887643 35678999999999999999999999999999999999999999999999
Q ss_pred ccccCcchhh
Q 020938 173 RKDLGVSYVK 182 (319)
Q Consensus 173 ~~~lnv~~~~ 182 (319)
++||||||+|
T Consensus 227 ~~~~~~~~~~ 236 (236)
T 3hl4_A 227 AKELNVSFIN 236 (236)
T ss_dssp ----------
T ss_pred HHHhCCcccC
Confidence 9999999986
No 2
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=279.52 Aligned_cols=147 Identities=30% Similarity=0.558 Sum_probs=129.4
Q ss_pred CCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC--CCCCCHHHHHHHHHhccCCcccccC
Q 020938 15 APSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG--KTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 15 ~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG--rPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
.|....++||++|||||||.||+++|++|+++|++.+|||||++|+++++.|| +|+||++||+++|++|+|||+|++.
T Consensus 193 ~~~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~D~~~LiVgV~~d~~v~~~Kg~~~pi~~~~ER~~~v~~~~~vd~V~v~ 272 (341)
T 3elb_A 193 EPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVIG 272 (341)
T ss_dssp CCCTTCEEEEEEECCTTCCHHHHHHHHHHHTTSSSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHHHTBTTCCEEEEE
T ss_pred CCCCCCEEEEEecccCCCCHHHHHHHHHHHHhCCCCEEEEEEccCHhhHhhcCCCCCCCCHHHHHHHHHHcCCCCCEEEC
Confidence 45556679999999999999999999999999722299999999999998888 5999999999999999999999999
Q ss_pred CCCCchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHhhHHH
Q 020938 93 APWVVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYNQY 162 (319)
Q Consensus 93 ap~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~yd~y 162 (319)
+||.++.+++++++||++|+|.++.... ..+.|.|+.++.+|+|..+++++++|||+||+||++++..|
T Consensus 273 ~~~~l~~~~~~~~~~~~iv~G~d~~~~~-~~g~d~y~~~k~~G~~~~i~~~~~~STt~ii~RI~~nr~~~ 341 (341)
T 3elb_A 273 APYAVTAELLSHFKVDLVCHGKTEIIPD-RDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEY 341 (341)
T ss_dssp ECSSCCHHHHHHTTCSEEEECSSCCCCC-TTSCCTTHHHHHHTCEEECCCSCCCCHHHHHHHHHC-----
T ss_pred CCCcchHHHHHhcCCcEEEECCCCcccc-CCccchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999876542 35678999999999999999999999999999999999876
No 3
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.7e-32 Score=263.05 Aligned_cols=140 Identities=45% Similarity=0.757 Sum_probs=127.7
Q ss_pred CCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCC
Q 020938 17 SDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWV 96 (319)
Q Consensus 17 ~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~ap~~ 96 (319)
..||++||+.||||+||.||+++|++|+++| ++|||||++|+.+.+.||.|++|.+||+++|++|+|||+|++.+||.
T Consensus 4 ~~~~~~v~~~G~FD~lH~GH~~lL~~A~~l~--d~LiVgV~~d~~v~~~K~~pi~s~eER~~~l~~l~~VD~Vv~f~~~~ 81 (341)
T 3elb_A 4 GRRAVRVWCDGCYDMVHYGHSNQLRQARAMG--DYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIKWVDEVVPAAPYV 81 (341)
T ss_dssp CCCCCEEEEEECCCSCCHHHHHHHHHHHHTS--SEEEEEECCHHHHHHHSSCCSSCHHHHHHHHHHBTTCCEEEETCCSS
T ss_pred CCCceEEEEEeeCCCCCHHHHHHHHHHHHhC--CcCEEEeecCHHHhccCCCCCCCHHHHHHHHHHcCCCCEEEecCCCC
Confidence 4788999999999999999999999999996 89999999999888788889999999999999999999999999988
Q ss_pred chHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHhhH
Q 020938 97 VTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKDYN 160 (319)
Q Consensus 97 ~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~yd 160 (319)
.+.+|+++++||++|+|.|+..+. .+.+.|+.++..|+|+++|||+|+|||+||.||+..+.
T Consensus 82 ~~~efi~~~~~d~vV~G~D~~~g~--~~~~~~~~~k~~G~~~~~~~t~g~STT~ii~ri~~~~~ 143 (341)
T 3elb_A 82 TTLETLDKYNCDFCVHGNDITLTV--DGRDTYEEVKQAGRYRECKRTQGVSTTDLVGRMLLVTK 143 (341)
T ss_dssp CCHHHHHHTTCSEEEECSCCCBCT--TSCBTTHHHHHTTCEEECCCCTTCCHHHHHHHHHC---
T ss_pred CHHHHHHHhCCCEEEECCCCCCCC--CCcchHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhcc
Confidence 889999999999999999877653 35678999999999999999999999999999987643
No 4
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=99.88 E-value=6.6e-23 Score=168.34 Aligned_cols=126 Identities=32% Similarity=0.450 Sum_probs=105.3
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC-CCCCCHHHHHHHHHhccCCcccccCCCCCch
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLRHCKWVDEVIPDAPWVVT 98 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG-rPV~s~eER~e~V~a~k~VDeVVi~ap~~~t 98 (319)
|+++++.|+||++|.||+.+|++|++++ +.++|+|+.|+... .|+ .|++|.++|++++++|++||.|++..+|..+
T Consensus 1 m~~~~~~G~FDp~H~GH~~li~~a~~~~--d~~~v~v~~~~~~~-~~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~ 77 (129)
T 1coz_A 1 MKKVITYGTFDLLHWGHIKLLERAKQLG--DYLVVAISTDEFNL-QKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQK 77 (129)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHTTS--SEEEEEEECHHHHH-HHTCCCSSCHHHHHHHHTTBTTCCEEEEECCSTTH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHh-cCCCCCCCCHHHHHHHHHhcCCCCEEEeCCCHHHH
Confidence 5689999999999999999999999997 78999999987321 123 6899999999999999999999886677666
Q ss_pred HHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHH
Q 020938 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIV 156 (319)
Q Consensus 99 ~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl 156 (319)
.+.+++++|++++.|.|+..+ ++.+++.|.++.+++...+|||.|+++|.
T Consensus 78 ~~~l~~~~~~~iv~G~D~~~~--------~~~L~~~~~v~~~~~~~~iSST~IR~~i~ 127 (129)
T 1coz_A 78 KQDIIDHNIDVFVMGDDWEGK--------FDFLKDQCEVVYLPRTEGISTTKIKEEIA 127 (129)
T ss_dssp HHHHHHTTCSEEEEEGGGTTT--------TGGGTTTSEEEEECCCTTCCHHHHHHTC-
T ss_pred HHHHHHhCCcEEEECCCCCCc--------HHHHHhCCeEEEcCCCCCcCHHHHHHHHH
Confidence 777899999999999875221 23467788999999999999999988764
No 5
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=99.88 E-value=8.6e-23 Score=168.55 Aligned_cols=128 Identities=30% Similarity=0.454 Sum_probs=95.3
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC-CCCCCHHHHHHHHHhccCCcccccCCCCCch
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLRHCKWVDEVIPDAPWVVT 98 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG-rPV~s~eER~e~V~a~k~VDeVVi~ap~~~t 98 (319)
|+++++.|+||++|.||+.+|++|++++ +.++|+|++|+.... ++ .|++|.++|++++++|.+||.|++..+|..+
T Consensus 1 m~~~~~~G~FDp~H~GH~~li~~a~~~~--~~~~v~v~~~~~~~~-~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~ 77 (132)
T 2b7l_A 1 MKRVITYGTYDLLHYGHIELLRRAREMG--DYLIVALSTDEFNQI-KHKKSYYDYEQRKMMLESIRYVDLVIPEKGWGQK 77 (132)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHHTS--SEEEEEEECHHHHHH-TTCCCSSCHHHHHHHHHTBTTCCEEEEECCGGGH
T ss_pred CeEEEEeeecCcCCHHHHHHHHHHHHhC--CcEEEEEECCHHHhc-cCCCCCCCHHHHHHHHHhcCCCCEEEECCChHHH
Confidence 5689999999999999999999999997 689999999974321 33 5799999999999999999999886666666
Q ss_pred HHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHh
Q 020938 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKD 158 (319)
Q Consensus 99 ~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~ 158 (319)
.+.+++++|++++.|.|...+ ++.+++.|.++.++++..+|||.|+++|.+.
T Consensus 78 ~~~~~~~~~~~iv~G~D~~~~--------~~~L~~~~~v~~i~~~~~iSST~IR~~i~~g 129 (132)
T 2b7l_A 78 EDDVEKFDVDVFVMGHDWEGE--------FDFLKDKCEVIYLKRTEGISTTKIKQELYGK 129 (132)
T ss_dssp HHHHHHTTCCEEEECGGGTTT--------TGGGTTTSEEEECSSCC--------------
T ss_pred HHHHHHcCCCEEEECCCCcCc--------HHHHHhCCEEEEECCCCCcCHHHHHHHHHhc
Confidence 777889999999999865221 2346778999999999999999999887653
No 6
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.86 E-value=8.5e-22 Score=166.43 Aligned_cols=134 Identities=21% Similarity=0.240 Sum_probs=92.4
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchH
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQ 99 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~ap~~~t~ 99 (319)
|++|++.|+||++|.||+.+|++|++++ +.++|+|++|+...+.+.+|++|.++|++++++|.+||.|++..|.. ..
T Consensus 2 m~~v~~~G~FD~vH~GH~~li~~a~~~~--~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~~~-f~ 78 (143)
T 3glv_A 2 MIRVMATGVFDILHLGHIHYLKESKKLG--DELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILGHEGD-MM 78 (143)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTS--SEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTBTTCSEEEECCTTC-HH
T ss_pred ceEEEEEeecCCCCHHHHHHHHHHHHhC--CCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhcCCCCEEEEcCchh-HH
Confidence 6789999999999999999999999996 78999999998766422368999999999999999999999987766 45
Q ss_pred HHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcC---eEEEccc--CCCCChHHHHHHHHHhhH
Q 020938 100 EFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG---KFKETKR--TDGISTSDIIMRIVKDYN 160 (319)
Q Consensus 100 e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G---~~~~~~r--T~giSTTdII~RIl~~yd 160 (319)
+++++++++++|+|.+...+ ..++.+..++.| .++.... ...+|||.|++.|.+.|.
T Consensus 79 ~~~~~l~~~~iv~G~d~~f~----~~~l~~~~~~~g~~v~vv~~~~~~~~~iSST~IR~~i~~~~~ 140 (143)
T 3glv_A 79 KTVIEVKPDIITLGYDQKFD----EAELQSKINKLGITVKIVRISKYDGQLNSSSSVRKKIMELIG 140 (143)
T ss_dssp HHHHHHCCSEEEECTTCHHH----HHHHHHHHHHHTCCCEEEECCCCC------------------
T ss_pred HHHHhcCCCEEEECCCCCCC----HHHHHHHHHHcCCeEEEEEeeccCCCcCCHHHHHHHHHHHhc
Confidence 68999999999999875332 224455555566 2333333 357999999999988764
No 7
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=99.80 E-value=1.7e-19 Score=157.04 Aligned_cols=130 Identities=15% Similarity=0.106 Sum_probs=94.4
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchH
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCKWVDEVIPDAPWVVTQ 99 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k~VDeVVi~ap~~~t~ 99 (319)
|++++++|+|||+|.||++++++|+++| |+|||||++|+ .| +|+++.++|++|++.+..++.|.+.....++.
T Consensus 5 m~i~i~~GsFDPiH~GHl~li~~A~~~~--d~viv~v~~~~----~K-~~~~~~~~R~~m~~~~~~~~~v~V~~~~~l~~ 77 (162)
T 4f3r_A 5 KPIAIYPGTFDPLTNGHVDIIERALPLF--NKIIVACAPTS----RK-DPHLKLEERVNLIADVLTDERVEVLPLTGLLV 77 (162)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHGGGC--SEEEEEECCC-----------CCHHHHHHHHHHHCCCTTEEEEECCSCHH
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHHHC--CcEEEEEecCC----cc-CCCCCHHHHHHHHHHhhCCCCEEEEeccchHH
Confidence 5789999999999999999999999997 89999999875 34 68999999999999765558887755556789
Q ss_pred HHHhhcCCcEEEecCCcccccCCCcchHHHHHHhc--C-eEEEcccCC---CCChHHHHHHHHH
Q 020938 100 EFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAA--G-KFKETKRTD---GISTSDIIMRIVK 157 (319)
Q Consensus 100 e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~--G-~~~~~~rT~---giSTTdII~RIl~ 157 (319)
+++++++++++++|.+...++.. ........+.. + ..+++.+++ .+|||.|++++..
T Consensus 78 ~~~~~~~~~~~v~G~r~~~Df~~-e~~~a~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~ 140 (162)
T 4f3r_A 78 DFAKTHQANFILRGLRAVSDFDY-EFQLAHMNYQLSPEIETIFLPAREGYSYVSGTMVREIVTL 140 (162)
T ss_dssp HHHHHTTCCEEEEEECSHHHHHH-HHHHHHHHHHHCTTCEEEEEECCGGGSSCCHHHHHHHHHT
T ss_pred HHHHHcCCCEEEECCCchhhhhh-HHHHHHHHHHhCCCccEEEEECCcccccccHHHHHHHHHc
Confidence 99999999999999765444310 00011111222 2 455555554 8999988777653
No 8
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=99.80 E-value=6e-20 Score=159.39 Aligned_cols=129 Identities=16% Similarity=0.037 Sum_probs=98.2
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCch
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVT 98 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi~ap~~~t 98 (319)
|++++++|+|||+|.||++++++|+++| |+|||||++++ .| +|+++.++|++|++. ++.++.|.+.....++
T Consensus 2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~--D~viv~v~~~~----~K-~~~~~~~eR~~ml~~a~~~~~~v~v~~~~~l~ 74 (157)
T 3nv7_A 2 QKVGIYPGTFDPVTNGHIDIIHRSSELF--EKLIVAVAHSS----AK-NPMFSLDERLKMIQLATKSFKNVECVAFEGLL 74 (157)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTS--SEEEEEEECCG----GG-CCSSCHHHHHHHHHHHHTTSTTEEEEEECSCH
T ss_pred CEEEEEEEEcCCCCHHHHHHHHHHHHhC--CceEEEEccCC----CC-CCCCCHHHHHHHHHHHhcCCCcEEEEecCchH
Confidence 5689999999999999999999999997 89999999885 24 689999999999996 7899998775445578
Q ss_pred HHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcC---eEEEcccCC---CCChHHHHHHHH
Q 020938 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG---KFKETKRTD---GISTSDIIMRIV 156 (319)
Q Consensus 99 ~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G---~~~~~~rT~---giSTTdII~RIl 156 (319)
.+++++++|+++++|.....|+.. .-+.....+..+ ..++++.++ .+|||.|++.+.
T Consensus 75 ~~~~~~~~~~~ivrG~r~~~D~~y-e~~~a~~n~~l~~~ietv~l~~~~~~~~iSSt~vRe~~~ 137 (157)
T 3nv7_A 75 AYLAKEYHCKVLVRGLRVVSDFEY-ELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIA 137 (157)
T ss_dssp HHHHHHTTCCCBCCCCSCCCCHHH-HHHHHHHHHHSSCCCCCCCCCCCHHHHTCCHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCcccchhhh-hHHHHHHHHHhCCCceEEEEcCCcccceeeHHHHHHHHH
Confidence 899999999999999654444310 011111223332 444556665 899999977654
No 9
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=99.76 E-value=3.2e-18 Score=152.45 Aligned_cols=130 Identities=15% Similarity=0.089 Sum_probs=98.7
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCch
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVT 98 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi~ap~~~t 98 (319)
|+++++.|+|||+|.||+.++++|+++| |.|+|+|++++ .| +|+++.++|+++|+. |+.+|.|++.....++
T Consensus 22 mki~v~~GsFDpiH~GHl~li~~A~~~~--d~viv~v~~~p----~K-~~l~s~eeR~~ml~~~~~~v~~v~v~~f~~~~ 94 (187)
T 3k9w_A 22 MVVAVYPGTFDPLTRGHEDLVRRASSIF--DTLVVGVADSR----AK-KPFFSLEERLKIANEVLGHYPNVKVMGFTGLL 94 (187)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEEECCG----GG-CCSSCHHHHHHHHHHHHTTCTTEEEEEESSCH
T ss_pred cEEEEEEEeCCcCcHHHHHHHHHHHHHC--CcEEEEEecCC----cc-CCCCCHHHHHHHHHHHhccCCcEEEEechhhH
Confidence 6799999999999999999999999997 89999999874 23 589999999999998 6899999875444678
Q ss_pred HHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhc--C-eEEEcccC---CCCChHHHHHHHHH
Q 020938 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAA--G-KFKETKRT---DGISTSDIIMRIVK 157 (319)
Q Consensus 99 ~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~--G-~~~~~~rT---~giSTTdII~RIl~ 157 (319)
.+++++++++++++|.+...++.. ........+.. + ..+++..+ ..||||.|++++..
T Consensus 95 ~d~l~~l~~~~iv~G~r~~~Df~~-E~~la~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~ 158 (187)
T 3k9w_A 95 KDFVRANDARVIVRGLRAVSDFEY-EFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQL 158 (187)
T ss_dssp HHHHHHTTCSEEEEECCTTSCHHH-HHHHHHHHHHHCTTCEEEEECCCGGGTTCCHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEECCCcccccch-HHHHHHHHHHhCCCCcEEEEecccccccccHHHHHHHHHc
Confidence 899999999999999765444310 00111112222 2 44555544 48999998777653
No 10
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=99.73 E-value=2.7e-17 Score=145.93 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=99.1
Q ss_pred CCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCcccccCCC
Q 020938 16 PSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIPDAP 94 (319)
Q Consensus 16 ~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDeVVi~ap 94 (319)
-..+|+++++.|+|||+|.||++++++|+++| |+|||+|+.++ .| +|+++.++|++|++ +++..+.|.+...
T Consensus 17 ~~~~mki~i~~GsFDPiH~GHl~ii~~A~~~~--D~Viv~v~~np----~K-~~~~s~eeR~~mv~~a~~~~~~v~V~~~ 89 (177)
T 3nbk_A 17 RGSHMTGAVCPGSFDPVTLGHVDIFERAAAQF--DEVVVAILVNP----AK-TGMFDLDERIAMVKESTTHLPNLRVQVG 89 (177)
T ss_dssp ---CCCEEEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEECCCT----TS-CCSSCHHHHHHHHHHHCTTCTTEEEEEC
T ss_pred CCCCCEEEEEEEeeCCCCHHHHHHHHHHHHHC--CEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHhCCCCCEEEEec
Confidence 34567899999999999999999999999998 89999999874 34 48999999999999 4788888887655
Q ss_pred CCchHHHHhhcCCcEEEecCCcccccCCCcch---HHHHHHhcCeEEEc---ccCCCCChHHHHHHHH
Q 020938 95 WVVTQEFLDKHQIDFVAHDSLPYADASGAGKD---VYEFVKAAGKFKET---KRTDGISTSDIIMRIV 156 (319)
Q Consensus 95 ~~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D---~y~~lK~~G~~~~~---~rT~giSTTdII~RIl 156 (319)
.+++.+++++++++++++|.....++.. .-+ ..+.+ ..-..+++ +....||||.|++++.
T Consensus 90 e~l~vd~~~~~~a~~ivrGlr~~~Dfey-e~~~a~~nr~l-~~ietvfl~~~~~~~~ISST~IRe~~~ 155 (177)
T 3nbk_A 90 HGLVVDFVRSCGMTAIVKGLRTGTDFEY-ELQMAQMNKHI-AGVDTFFVATAPRYSFVSSSLAKEVAM 155 (177)
T ss_dssp CSCHHHHHHHTTCCEEEEEECTTCCHHH-HHHHHHHHHHH-HCCEEEEEECCGGGSSCCHHHHHHHHH
T ss_pred CchHHHHHHHcCCCEEEECCCchhHHHH-HHHHHHHHHhc-CCCceEEEeCCCcccccchHHHHHHHH
Confidence 6789999999999999999765555420 000 01123 22233443 3456899999977654
No 11
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.73 E-value=3.2e-17 Score=143.56 Aligned_cols=129 Identities=13% Similarity=0.111 Sum_probs=93.6
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCch
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVT 98 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi~ap~~~t 98 (319)
++++++.|+|||+|.||+.++++|+++| |.|+|+|++++ .| +|+++.++|++||+. ++.++.|.+....+++
T Consensus 3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~--d~viv~v~~~p----~K-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t 75 (168)
T 3f3m_A 3 HTIAVIPGSFDPITYGHLDIIERSTDRF--DEIHVCVLKNS----KK-EGTFSLEERMDLIEQSVKHLPNVKVHQFSGLL 75 (168)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHGGGS--SEEEEEECC----------CCSCHHHHHHHHHHHTTTCTTEEEEECCSCH
T ss_pred ceEEEEEEEcCcCCHHHHHHHHHHHHhC--CEEEEEEcCCC----CC-CCCCCHHHHHHhHHHHhcCCCCEEEEEcCCCH
Confidence 5689999999999999999999999998 89999999865 34 689999999999995 6788887764444678
Q ss_pred HHHHhhcCCcEEEecCCcccccCCCcc-hHHHHHHhcC---eEEEcccC---CCCChHHHHHHHHH
Q 020938 99 QEFLDKHQIDFVAHDSLPYADASGAGK-DVYEFVKAAG---KFKETKRT---DGISTSDIIMRIVK 157 (319)
Q Consensus 99 ~e~L~~~kpD~VvhG~d~y~d~~~~~~-D~y~~lK~~G---~~~~~~rT---~giSTTdII~RIl~ 157 (319)
.++++++++++++.|.+...++. .. ......+..+ ..+++..+ ..||||.|++++..
T Consensus 76 vd~~~~l~~~~~I~G~d~~~d~~--~e~~~a~~~r~l~~~~e~v~l~~~p~~~~ISST~IRe~~~~ 139 (168)
T 3f3m_A 76 VDYCEQVGAKTIIRGLRAVSDFE--YELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAY 139 (168)
T ss_dssp HHHHHHHTCCEEEEEECTTCCHH--HHHHHHHHHHHHCTTSEEEEEECCTTTTTCCHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEcCCchhhhh--HHHHHhHHhHhhCCCCcEEEEeCCcccccccHHHHHHHHHc
Confidence 99999999999999976655541 11 1111112221 23333333 34999999887754
No 12
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.72 E-value=3.7e-17 Score=142.36 Aligned_cols=126 Identities=19% Similarity=0.167 Sum_probs=93.7
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCcccccCCCCCchH
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIPDAPWVVTQ 99 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDeVVi~ap~~~t~ 99 (319)
.++++.|+|||||.||+.++++|+++| |.|+|+|+++. .| +|+++.++|++||+ +|+.++.|.+......+.
T Consensus 13 ~i~i~~GsFdP~H~GHl~l~~~A~~~~--D~viv~v~~~~----~k-k~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~tv 85 (173)
T 1vlh_A 13 MKAVYPGSFDPITLGHVDIIKRALSIF--DELVVLVTENP----RK-KCMFTLEERKKLIEEVLSDLDGVKVDVHHGLLV 85 (173)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHTTC--SEEEEEEECCT----TC-CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHH
T ss_pred eEEEEEEEECcCcHHHHHHHHHHHHHC--CEEEEEEeCCC----CC-CCCCCHHHHHHHHHHHhcCCCCEEEecCcchHH
Confidence 469999999999999999999999998 89999999974 23 48999999999999 799999887643334789
Q ss_pred HHHhhcCCcEEEecCCcccccCCCcchHHH--HHHhc----CeEEEcc---cCCCCChHHHHHHHHH
Q 020938 100 EFLDKHQIDFVAHDSLPYADASGAGKDVYE--FVKAA----GKFKETK---RTDGISTSDIIMRIVK 157 (319)
Q Consensus 100 e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~--~lK~~----G~~~~~~---rT~giSTTdII~RIl~ 157 (319)
++++.+++++++.|.....++ ..... .+.+. ...+++. ..+++|||.|++++..
T Consensus 86 d~l~~l~~~~~i~gl~~w~d~----~~~~~~~~~~r~~~~~~~~i~l~~~~~~~~iSST~IR~~i~~ 148 (173)
T 1vlh_A 86 DYLKKHGIKVLVRGLRAVTDY----EYELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALY 148 (173)
T ss_dssp HHHHHHTCCEEEEEECTTSCH----HHHHHHHHHHHHHSTTCEEEEEECCGGGTTCCHHHHHHHHHT
T ss_pred HHHHHhCCCeEEeCCCcccch----hhccchhhcCCCCCCCCcEEEEeCCCCCCceeHHHHHHHHHc
Confidence 999999999999885322222 11111 11111 1233333 3447999999888764
No 13
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.72 E-value=1.2e-17 Score=146.59 Aligned_cols=127 Identities=16% Similarity=0.090 Sum_probs=92.8
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCccccc-CCCCCc
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIP-DAPWVV 97 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDeVVi-~ap~~~ 97 (319)
|++++++|+|||+|.||+.++++|+++| |.|+|||++++ .| +|+++.++|++|++ +++.++.|.+ .....+
T Consensus 2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~--D~viv~v~~~~----~K-~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e~~ 74 (171)
T 3nd5_A 2 RKIALFPGSFDPMTNGHLNLIERSAKLF--DEVIIGVFINT----SK-QTLFTPEEKKYLIEEATKEMPNVRVIMQETQL 74 (171)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHTTC--SEEEEEEEC-----------CCCHHHHHHHHHHHHTTCTTEEEEEECSSC
T ss_pred CeEEEEEEEccccCHHHHHHHHHHHHHC--CCeEEEEecCC----CC-CCCCCHHHHHHHHHHHHccCCCEEEeeCCCCc
Confidence 5689999999999999999999999998 89999998764 24 48999999999999 5799999877 444467
Q ss_pred hHHHHhhcCCcEEEecCCcccccCCCcchHHH---HHHh----cCeEEEc--ccCCCCChHHHHHHHHH
Q 020938 98 TQEFLDKHQIDFVAHDSLPYADASGAGKDVYE---FVKA----AGKFKET--KRTDGISTSDIIMRIVK 157 (319)
Q Consensus 98 t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~---~lK~----~G~~~~~--~rT~giSTTdII~RIl~ 157 (319)
+.+++++++++++++|.+...++. ..+. ..+. .+.+..+ |....+|||.|++++..
T Consensus 75 tvd~~~~l~~~~~i~G~~~~~d~~----~e~~la~~nr~l~~~~etv~l~~~~~~~~ISST~IRe~~~~ 139 (171)
T 3nd5_A 75 TVESAKSLGANFLIRGIRNVKDYE----YEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRF 139 (171)
T ss_dssp HHHHHHHHTCCEEEEEECSHHHHH----HHHHHHHHHHHHCTTSEEEEEECCGGGTTCCHHHHHHHHHT
T ss_pred HHHHHHHCCCCEEEECCCchhhhH----HHHHHHHHhhhhcCCccEEEEeCCccccccchHHHHHHHHc
Confidence 899999999999999976444431 1111 1111 1223222 33458999999887754
No 14
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.67 E-value=4.6e-16 Score=130.81 Aligned_cols=127 Identities=15% Similarity=0.105 Sum_probs=92.8
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCcccccCCCCCch
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIPDAPWVVT 98 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDeVVi~ap~~~t 98 (319)
++++++.|+|||+|.||+.++++|++.+ +.|+|+++.++. | +++++.++|++|++ ++..+|.|++......+
T Consensus 1 ~~i~i~~GsFDpvH~GH~~l~~~a~~~~--d~v~v~~~~~p~----k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~~~~~ 73 (158)
T 1qjc_A 1 QKRAIYPGTFDPITNGHIDIVTRATQMF--DHVILAIAASPS----K-KPMFTLEERVALAQQATAHLGNVEVVGFSDLM 73 (158)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTS--SEEEEEEESCCS----S-CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCH
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHhC--CEEEEEECCCCC----C-CCCCCHHHHHHHHHHHHhcCCCeEEcccchHH
Confidence 4579999999999999999999999997 789999988742 4 47999999999999 48899988763222356
Q ss_pred HHHHhhcCCcEEEecCCcccccCCCcchHHH--HH-HhcC----eEEEcccC--CCCChHHHHHHHHH
Q 020938 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYE--FV-KAAG----KFKETKRT--DGISTSDIIMRIVK 157 (319)
Q Consensus 99 ~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~--~l-K~~G----~~~~~~rT--~giSTTdII~RIl~ 157 (319)
.++++++++++++.|.+...++ ..... .+ +..+ .+..++.. ..+|||.|+++|..
T Consensus 74 ~~~l~~l~~~~~v~G~d~~~~~----~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~ 137 (158)
T 1qjc_A 74 ANFARNQHATVLIRGLRAVADF----EYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARH 137 (158)
T ss_dssp HHHHHHTTCCEEEEECCTTCCH----HHHHHHHHHHHHHCTTSEEEEECCCGGGTTCCHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEeccchhhh----HHHHHHHHhCccCCCCCCEEEEECCCCCCccCHHHHHHHHHc
Confidence 7899999999999998644332 11111 11 2221 23333322 46999999888754
No 15
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.60 E-value=6.8e-15 Score=125.81 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=92.2
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCch
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPDAPWVVT 98 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi~ap~~~t 98 (319)
++++++.|+|||+|.||+.++++|++.+ +.|+|+++.++ .| ++++|.++|++||+. +..+|.|.+......+
T Consensus 2 ~~i~i~~GsFDpvH~GH~~li~~a~~~~--d~v~v~~~~~p----~k-~~l~~~~~R~~ml~~a~~~~~~v~v~~~e~~~ 74 (169)
T 1o6b_A 2 ASIAVCPGSFDPVTYGHLDIIKRGAHIF--EQVYVCVLNNS----SK-KPLFSVEERCELLREVTKDIPNITVETSQGLL 74 (169)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEECCCC----SS-CCSSCHHHHHHHHHHHHTTCTTEEEEECSSCH
T ss_pred CcEEEEEEeeCCCCHHHHHHHHHHHHhC--CEEEEEECCCC----cc-CCCCCHHHHHHHHHHHHhcCCCEEEcccchHH
Confidence 3579999999999999999999999997 78999888653 23 578999999999994 6888887763222457
Q ss_pred HHHHhhcCCcEEEecCCcccccCCCcchHHHHHHh-c--C-eEEEcccC---CCCChHHHHHHHHH
Q 020938 99 QEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKA-A--G-KFKETKRT---DGISTSDIIMRIVK 157 (319)
Q Consensus 99 ~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~-~--G-~~~~~~rT---~giSTTdII~RIl~ 157 (319)
.++++.+++++++.|.+...++.. .--...+.+ . | ..+.+... ..+|||.|+++|..
T Consensus 75 ~~~l~~l~~~~~i~G~d~~~~~~~--~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~ 138 (169)
T 1o6b_A 75 IDYARRKNAKAILRGLRAVSDFEY--EMQGTSVNRVLDESIETFFMMANNQYSFLSSSIVKEVARY 138 (169)
T ss_dssp HHHHHHTTCSEEEEEECSGGGHHH--HHHHHHHHHHHCTTSEEEEEECCSTTTTCCHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEcCccccchHH--HHHHHHHhccccCCCCEEEEECCCCCCcCcHHHHHHHHHc
Confidence 788999999999999875543310 000111222 1 3 23333222 36999999888764
No 16
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.59 E-value=9.9e-15 Score=123.11 Aligned_cols=126 Identities=14% Similarity=0.163 Sum_probs=87.9
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCcccccCCCCCchHHH
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIPDAPWVVTQEF 101 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDeVVi~ap~~~t~e~ 101 (319)
+++.|+|||+|.||+.++++|++.+ +.++|+++.++. + ++.++++.++|++|++ ++..+|.|.+......+.++
T Consensus 3 ~v~~GsFdp~H~GH~~l~~~a~~~~--d~v~v~~~~~p~--k-~~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~ 77 (160)
T 1od6_A 3 VVYPGSFDPLTNGHLDVIQRASRLF--EKVTVAVLENPS--K-RGQYLFSAEERLAIIREATAHLANVEAATFSGLLVDF 77 (160)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEEECC--------CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHHHH
T ss_pred EEEEeeeCCCCHHHHHHHHHHHHHC--CEEEEEEcCCCC--C-CCCCCCCHHHHHHHHHHHhcCCCCEEEEecCchHHHH
Confidence 8999999999999999999999997 789999886642 1 1246999999999999 46888887663222357789
Q ss_pred HhhcCCcEEEecCCcccccCCCcchHHH--H-HHhc--C-eEEE-ccc--CCCCChHHHHHHHHH
Q 020938 102 LDKHQIDFVAHDSLPYADASGAGKDVYE--F-VKAA--G-KFKE-TKR--TDGISTSDIIMRIVK 157 (319)
Q Consensus 102 L~~~kpD~VvhG~d~y~d~~~~~~D~y~--~-lK~~--G-~~~~-~~r--T~giSTTdII~RIl~ 157 (319)
++.+++++++.|.+...++ ..... . .+.. + ..+. ++. ...+|||.|+++|..
T Consensus 78 l~~l~~~~~v~G~d~~~~~----~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~ 138 (160)
T 1od6_A 78 VRRVGAQAIVKGLRAVSDY----EYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARY 138 (160)
T ss_dssp HHHTTCSEEEEEECTTSCH----HHHHHHHHHHHHHTTTCEEEEEECCGGGTTCCHHHHHHHHHT
T ss_pred HHHcCCCEEEEeCCcccch----HHHHHHHHhCcCCCCCCCEEEEeCCCCCCcccHHHHHHHHHc
Confidence 9999999999997633322 11111 1 2222 1 2222 222 247999999888754
No 17
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=99.54 E-value=1.1e-14 Score=125.92 Aligned_cols=132 Identities=11% Similarity=-0.005 Sum_probs=93.8
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC-CCCCCHHHHHHHHH-hccCCcccccCCC----
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLR-HCKWVDEVIPDAP---- 94 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG-rPV~s~eER~e~V~-a~k~VDeVVi~ap---- 94 (319)
+++++.|+|||+|.||+.++++|++.++.+.+++++++++.. |+ .++++.++|++|++ +++.+|.|.+...
T Consensus 3 ~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~~---k~~~~~~~~~~R~~ml~~~~~~~~~v~v~~~e~~~ 79 (189)
T 2qtr_A 3 KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPH---KQGRNITSVESRLQMLELATEAEEHFSICLEELSR 79 (189)
T ss_dssp EEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCTT---CTTSCCCCHHHHHHHHHHHHTTCTTEEECCTGGGS
T ss_pred eEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCCC---ccCCCCCCHHHHHHHHHHHhCCCCCEEEehHHhcC
Confidence 578999999999999999999999998668999999987632 32 46999999999999 5788888776321
Q ss_pred --CCchHHHHhhcCCcE------EEecCCcccccCCCcchHHHHHHhcCeEEEcccC-----------------CCCChH
Q 020938 95 --WVVTQEFLDKHQIDF------VAHDSLPYADASGAGKDVYEFVKAAGKFKETKRT-----------------DGISTS 149 (319)
Q Consensus 95 --~~~t~e~L~~~kpD~------VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT-----------------~giSTT 149 (319)
+..+.+.++.++..+ ++.|.|...+... ..+ ++.+.+.+.++.++|. ..+|||
T Consensus 80 ~~~~~~~~~l~~l~~~~p~~~~~~v~G~D~~~~~~~-w~~-~~~l~~~~~~~v~~r~~~~~~~~~~v~~~~~~~~~iSST 157 (189)
T 2qtr_A 80 KGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPK-WYN-IEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSS 157 (189)
T ss_dssp CSCCCHHHHHHHHHHHCTTCEEEEEEEHHHHHHGGG-STT-HHHHTTTCEEEEECCTTCCCCCSSCCEEECCCCCCCCHH
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEehhhhhhhhc-cCC-HHHHHHhCCEEEEECCCCCccCCceEEEEcCCCCccCHH
Confidence 135667777776555 8889764332110 111 3456566665555442 368999
Q ss_pred HHHHHHHH
Q 020938 150 DIIMRIVK 157 (319)
Q Consensus 150 dII~RIl~ 157 (319)
.|+++|..
T Consensus 158 ~IR~~l~~ 165 (189)
T 2qtr_A 158 LLRERYKE 165 (189)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99887754
No 18
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=99.54 E-value=6.9e-14 Score=122.44 Aligned_cols=133 Identities=13% Similarity=-0.047 Sum_probs=87.6
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC-CCCCCHHHHHHHHH-hccCCcccccCC-----
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLR-HCKWVDEVIPDA----- 93 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG-rPV~s~eER~e~V~-a~k~VDeVVi~a----- 93 (319)
+++++.|+||++|.||+.++++|++.++.+.++|+++.+.. .|+ .++++.++|++|++ +|+.++.|.+..
T Consensus 8 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~ 84 (194)
T 1kam_A 8 KIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPP---HKQNEDYTDSFHRVEMLKLAIQSNPSFKLELVEMER 84 (194)
T ss_dssp EEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHTTCTTEEECCGGGST
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCC---CcCCcCCCCHHHHHHHHHHHHcCCCCeEEeHHHhcC
Confidence 57899999999999999999999999866889999987753 243 56899999999999 588888877632
Q ss_pred -CCCchHHHHhhcCC---c---EEEecCCcccccCCCcchHHHHHHhcCeEEEcccC-----------------CCCChH
Q 020938 94 -PWVVTQEFLDKHQI---D---FVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRT-----------------DGISTS 149 (319)
Q Consensus 94 -p~~~t~e~L~~~kp---D---~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT-----------------~giSTT 149 (319)
....+.+.++.++. + +++.|.|...+.. ...+ |+.+-+...++..+|. ..+|||
T Consensus 85 ~~~~~t~~~l~~l~~~~p~~~~~~v~G~D~~~~~~-~W~~-~e~i~~~~~~~v~~R~g~~~~l~~~i~~~~~~~~~ISST 162 (194)
T 1kam_A 85 EGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLP-KWYK-LDELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSST 162 (194)
T ss_dssp TCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCC-CCHH-HHHHHHHSEEEEEECSSCCCCCSSCCEEEECCCBCCCHH
T ss_pred CCCCChHHHHHHHHHHCCCCcEEEEEecchhhhhc-cccC-HHHHHHhCcEEEEECCCcchhcCCCEEEeCCCCCCcCHH
Confidence 11345666666544 4 9999987654421 1111 2222222233333331 279999
Q ss_pred HHHHHHHHh
Q 020938 150 DIIMRIVKD 158 (319)
Q Consensus 150 dII~RIl~~ 158 (319)
.|+++|...
T Consensus 163 ~IR~~i~~g 171 (194)
T 1kam_A 163 MIRERFKSK 171 (194)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 998887643
No 19
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=99.52 E-value=2.3e-15 Score=129.10 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=88.2
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-c-cC----CcccccCCCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-C-KW----VDEVIPDAPW 95 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~-k~----VDeVVi~ap~ 95 (319)
+|++.|+|||+|.||+.++++|++++ -|.|+|||++|+..++ +.+|+++.++|++||+. + +. +.-+-+.+++
T Consensus 2 ~~i~gGtFDPiH~GHl~l~~~a~~~~-~d~viv~v~~~~~~~k-~~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~D~~ 79 (148)
T 3do8_A 2 KVALGGTFEPLHEGHKKLIDVAIKLG-GRDITIGVTSDRMARA-RIRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNPY 79 (148)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHHH-TTCEEEEEECHHHHHH-HSCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECSTT
T ss_pred EEEEEeeCCCCCHHHHHHHHHHHHhC-CCEEEEEECCCccccc-cCCCCCCHHHHHHHHHHHHhcccCCcEEEEeecCCC
Confidence 58999999999999999999999983 3799999999987633 24689999999999985 4 32 2222235666
Q ss_pred CchHHHHhhcCCcEEEecCCcccccCCCcchHHHHHHhcCe----EEEccc-----CCCCChHHHHHHHHHh
Q 020938 96 VVTQEFLDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAGK----FKETKR-----TDGISTSDIIMRIVKD 158 (319)
Q Consensus 96 ~~t~e~L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G~----~~~~~r-----T~giSTTdII~RIl~~ 158 (319)
..+. .-.+|++|.+...+.+ ...+-+..++.|- +..++. ...+|||.|+++++..
T Consensus 80 g~~~----~~~~d~ivvs~Et~~~----~~~l~~~~~~~G~~~l~V~~v~~~~~~~~~~iSST~IR~~~id~ 143 (148)
T 3do8_A 80 GKTL----DVDFEYLVVSPETYEM----ALKINQKREELGKRKITIVKVDWMMAEDGKPISSTRIKRGEIDR 143 (148)
T ss_dssp TTTT----TSCCSEEEECTTTHHH----HHHHHHHHHHHTCCCCEEEEEECCC-------CCCCCCCSCCC-
T ss_pred CCCC----CCCCCEEEEChhhccc----HHHHHHHHHHcCCCeeEEEEeccEEcCCCCEEEHHHHHHHHHhh
Confidence 5543 3688999988765543 2334444566664 444443 2358999998877654
No 20
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=99.45 E-value=1e-12 Score=120.25 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=75.3
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCcccccCC-----
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIPDA----- 93 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDeVVi~a----- 93 (319)
++++++.|+|||+|.||+.++++|++.++-|.|+|+++.+... |+.++++.++|++||+ +|..++.|.+..
T Consensus 23 ~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p~---K~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~ 99 (242)
T 1yum_A 23 KRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPH---RETPQVSAAQRLAMVERAVAGVERLTVDPRELQR 99 (242)
T ss_dssp CEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCGG---GSCTTCCHHHHHHHHHHHHTTCTTEEECCGGGGS
T ss_pred ceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCCC---CCCCCCCHHHHHHHHHHHhcCCCeEEEeeeeecC
Confidence 5679999999999999999999999987668999999998632 4457899999999999 688888877642
Q ss_pred -CCCchHHHHhhc----CCc---EEEecCC
Q 020938 94 -PWVVTQEFLDKH----QID---FVAHDSL 115 (319)
Q Consensus 94 -p~~~t~e~L~~~----kpD---~VvhG~d 115 (319)
.+..|.+.|+.+ +|+ +++.|.|
T Consensus 100 ~~~sytvdtl~~l~~~~~p~~~~~fI~G~D 129 (242)
T 1yum_A 100 DKPSYTIDTLESVRAELAADDQLFMLIGWD 129 (242)
T ss_dssp SSSCCHHHHHHHHHHHSCTTCEEEEEEEHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCcEEEEEehh
Confidence 224678888665 688 7888873
No 21
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=99.43 E-value=1.1e-12 Score=116.54 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=72.1
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCcccccCC------CC
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIPDA------PW 95 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDeVVi~a------p~ 95 (319)
+++.|+|||+|.||+.++++|++.++-+.++|+++.+... |..++++.++|++|++ +++.++.|.+.. ..
T Consensus 6 ~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~~---k~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~ 82 (213)
T 1k4m_A 6 ALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPH---RPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAP 82 (213)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTT---SCCCSSCHHHHHHHHHHHHTTCTTEEECCHHHHCSSC
T ss_pred EEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCCC---CCCCCCCHHHHHHHHHHHhccCCCEEEeHHHhcCCCC
Confidence 8999999999999999999999987557899988877532 4346999999999999 678888887631 12
Q ss_pred CchHHHHhhc----CCc---EEEecCC
Q 020938 96 VVTQEFLDKH----QID---FVAHDSL 115 (319)
Q Consensus 96 ~~t~e~L~~~----kpD---~VvhG~d 115 (319)
..|.++++.+ +|+ +++.|.|
T Consensus 83 s~t~~~l~~l~~~~~~~~~~~~i~G~D 109 (213)
T 1k4m_A 83 SYTAQTLKEWRQEQGPDVPLAFIIGQD 109 (213)
T ss_dssp CCHHHHHHHHHHHHCTTSCEEEEEEHH
T ss_pred CcHHHHHHHHHHHhCCCCcEEEEEehh
Confidence 3456777655 899 8999974
No 22
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=99.41 E-value=4.4e-13 Score=126.69 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=91.7
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCCCCe---EEEEeccCc--ccccc-CCCCCCCHHHHHHHHHhccCCcccccC---C
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFPNTY---LLVGCCNDE--TTHKF-KGKTVMTEDERYESLRHCKWVDEVIPD---A 93 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~gd~---LIVGV~sDe--~v~~~-KGrPV~s~eER~e~V~a~k~VDeVVi~---a 93 (319)
|++.|+||.+|.||..+|++|++++ +. ..|+++.|+ .+.+. +.+|++|.++|+++|+++. ++.|+.. +
T Consensus 2 vvtiG~FDgvH~GH~~ll~~a~~~a--~~~~~~~vVvtFdphP~~l~~~~~~~l~~~~eR~~ll~~lg-~~~v~~F~~~a 78 (293)
T 1mrz_A 2 VVSIGVFDGVHIGHQKVLRTMKEIA--FFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYA-RTVVLDFFRIK 78 (293)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHH--HHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTTS-CEEEECHHHHT
T ss_pred EEEEeeCccccHHHHHHHHHHHHHH--HHcCCeEEEEEecCCHHHhCCCCCCCCCCHHHHHHHHHhCC-CEEEEEhHHhh
Confidence 6889999999999999999999875 33 225555564 22221 1257999999999999998 6555542 1
Q ss_pred CCCchHHHHhh--cCCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEccc----CCCCChHHHHHHHHHh
Q 020938 94 PWVVTQEFLDK--HQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKR----TDGISTSDIIMRIVKD 158 (319)
Q Consensus 94 p~~~t~e~L~~--~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~~r----T~giSTTdII~RIl~~ 158 (319)
. ....+|++. ++|+++|+|.|+.......+ + .+.+++.| .+..+|. +..+|||.|++.|...
T Consensus 79 ~-ls~~~Fi~~ill~~~~iVvG~Df~fG~~~~g-~-~~~L~~~G~~V~~v~~~~~~~~~iSST~IR~~L~~G 147 (293)
T 1mrz_A 79 D-LTPEGFVERYLSGVSAVVVGRDFRFGKNASG-N-ASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEG 147 (293)
T ss_dssp T-CCHHHHHHHHCTTCCEEEEETTCCBSGGGCB-C-HHHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTT
T ss_pred c-CCHHHHHHHHhcCCCEEEECCCCCCCCCCCC-C-HHHHHhCCCEEEEECCEEeCCccccHhHHHHHHhcC
Confidence 1 124678877 89999999998765432112 2 45566676 7777774 4589999998887654
No 23
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=99.39 E-value=5.8e-13 Score=117.07 Aligned_cols=130 Identities=12% Similarity=0.057 Sum_probs=83.7
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccC-------Cccccc
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKW-------VDEVIP 91 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~-------VDeVVi 91 (319)
+++++++|+|||+|.||+.+++ |.+.+ |.|+|+++++. ..| ++.++.++|++|++. ++. |+.+-.
T Consensus 2 ~~igi~gGsFdPih~GHl~i~~-a~~~~--d~v~~~p~~~~---~~k-~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~ 74 (177)
T 3h05_A 2 KKIAIFGSAFNPPSLGHKSVIE-SLSHF--DLVLLEPSIAH---AWG-KNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQ 74 (177)
T ss_dssp CEEEEEEECCSSCCHHHHHHHT-TCTTS--SEEEEEECC-----------CCCHHHHHHHHHHHHHHHCCTTEEECCHHH
T ss_pred cEEEEEEeccchhhHHHHHHHH-HHHHC--CEEEEEECCCC---CCC-CCCCCHHHHHHHHHHHHhcCCCCcEEEEehhh
Confidence 3579999999999999999998 87777 89999998862 223 578999999999985 432 222211
Q ss_pred C---CC-CCchHHHHh---hcCCc---EEEecCCcccccCCCcchHHHHHHhcCeEEEcccCCCCChHHHHHHHHHh
Q 020938 92 D---AP-WVVTQEFLD---KHQID---FVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRTDGISTSDIIMRIVKD 158 (319)
Q Consensus 92 ~---ap-~~~t~e~L~---~~kpD---~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT~giSTTdII~RIl~~ 158 (319)
. .. +..|.+.|+ +.-|+ +++.|.|...... ...+ ++.+-+...++.++|+..+|||.|+++|.+.
T Consensus 75 ~l~~~~~~syT~dTl~~l~~~~p~~~~~~iiG~D~l~~l~-~W~~-~~~l~~~~~~vv~~r~~~iSST~IR~~i~~g 149 (177)
T 3h05_A 75 ALYQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFA-KFYK-AEEITERWTVMACPEKVKIRSTDIRNALIEG 149 (177)
T ss_dssp HHC----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHTGG-GSTT-HHHHHHHSEEEECCCSSCCCHHHHHHHHHHT
T ss_pred hcccCCCCcchHHHHHHHHHHhcCCCeEEEEecchhhhcc-cchh-HHHHHHhCCEEEEcCCCCCcHHHHHHHHHcC
Confidence 1 11 223444444 33344 5678886543210 0112 3344445577788999999999999988764
No 24
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=99.35 E-value=2e-12 Score=112.70 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=87.0
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC-CCCCCHHHHHHHHH-hccCCcccccCC-----
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG-KTVMTEDERYESLR-HCKWVDEVIPDA----- 93 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG-rPV~s~eER~e~V~-a~k~VDeVVi~a----- 93 (319)
+++++.|+|||+|.||+.++++|++.++.+.+++.++.+... |+ .++++.++|++|++ +++..+.|.+..
T Consensus 3 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~---k~~~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~~~ 79 (189)
T 2h29_A 3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPL---KKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKR 79 (189)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCTT---SCCCSSCCCHHHHHHHHHHHHHHTCCEECCHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCCC---CcCCCCCCHHHHHHHHHHHHcCCCCEEEehHHhcC
Confidence 578999999999999999999999987668888877776532 33 57899999999999 566666555421
Q ss_pred -CCCchHHHHh---hcCCc---EEEecCCcccccCCCcchHHHHHHhcCeEEEcccC-----------------CCCChH
Q 020938 94 -PWVVTQEFLD---KHQID---FVAHDSLPYADASGAGKDVYEFVKAAGKFKETKRT-----------------DGISTS 149 (319)
Q Consensus 94 -p~~~t~e~L~---~~kpD---~VvhG~d~y~d~~~~~~D~y~~lK~~G~~~~~~rT-----------------~giSTT 149 (319)
....|.+.++ +.-|+ +++.|.|...+.. ...+.-+.++. ..++.++|. ..+|||
T Consensus 80 ~~~syt~dtl~~l~~~~p~~~~~~i~G~D~~~~~~-~W~~~~~i~~~-~~~~v~~R~~~~~~~~~~i~~~~~~~~~ISST 157 (189)
T 2h29_A 80 GGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLE-KWYQIEYLKEM-VTFVVVNRDKNSQNVENAMIAIQIPRVDISST 157 (189)
T ss_dssp CSBCCHHHHHHHHHHHSTTEEEEEEEEHHHHTTGG-GSTTHHHHHHH-CEEEEECCSSSCCCCCTTSEEECCCCBCCCHH
T ss_pred CCCCCHHHHHHHHHHHCCCCcEEEEEecchhhhhc-cccCHHHHHhh-CcEEEEECCCCccccCCcEEEEcCCCCccCHH
Confidence 1224555554 33466 8889976433210 00111122323 334444443 369999
Q ss_pred HHHHHHHH
Q 020938 150 DIIMRIVK 157 (319)
Q Consensus 150 dII~RIl~ 157 (319)
.|++++..
T Consensus 158 ~IR~~i~~ 165 (189)
T 2h29_A 158 MIRQRVSE 165 (189)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99888754
No 25
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.34 E-value=7e-12 Score=118.75 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=82.5
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccc-----cccCCCCCCCHHHHHHHHH-hccCCcc-ccc-
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETT-----HKFKGKTVMTEDERYESLR-HCKWVDE-VIP- 91 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v-----~~~KGrPV~s~eER~e~V~-a~k~VDe-VVi- 91 (319)
++++++.|+|||||.||+.++++|+++| |+|+|+|++++.. +..+.++.+|.++|++||+ +|+..+. |.+
T Consensus 2 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~--d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~v~ 79 (365)
T 1lw7_A 2 KKVGVIFGKFYPVHTGHINMIYEAFSKV--DELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFIH 79 (365)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTC--SEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTEEEE
T ss_pred CcEEEEEEeeCCCCHHHHHHHHHHHHHC--CEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhhcCCCcEEEE
Confidence 3579999999999999999999999997 8999999998753 1112233599999999998 5676554 332
Q ss_pred -------CC-C-----CCc-hHHHHh--hcCCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEcc--c-CCCCChHHH
Q 020938 92 -------DA-P-----WVV-TQEFLD--KHQIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETK--R-TDGISTSDI 151 (319)
Q Consensus 92 -------~a-p-----~~~-t~e~L~--~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~~--r-T~giSTTdI 151 (319)
+. | |.. ...+++ .+++++++.+..++. ....+..| .+++++ | ...+|||.|
T Consensus 80 ~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~---------~~~~~~~~~e~v~l~~~~~~~~iSsT~I 150 (365)
T 1lw7_A 80 HLVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQDK---------APYEKYLGLEVSLVDPDRTFFNVSATKI 150 (365)
T ss_dssp EEECSSSCCTTSCHHHHHHHHHHHHHHTTCCCSEEECSCGGGH---------HHHHHHTCCEEECCCSSCCSSCCCHHHH
T ss_pred EeccCCCCCCchHHHHHHHHHHHHhhccCCCCcEEEECCCCCH---------HHHHHHcCCceEEeCCcccCCCCCHHHH
Confidence 11 1 111 112233 367887775542211 12334456 566665 4 368999999
Q ss_pred HHHH
Q 020938 152 IMRI 155 (319)
Q Consensus 152 I~RI 155 (319)
++.+
T Consensus 151 Re~~ 154 (365)
T 1lw7_A 151 RTTP 154 (365)
T ss_dssp HHCG
T ss_pred HhCh
Confidence 7754
No 26
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.32 E-value=2.9e-11 Score=103.81 Aligned_cols=121 Identities=18% Similarity=0.271 Sum_probs=77.0
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEe-ccCccccccCCCCCCCHHHHHHHHH-hccCCc-cccc--CCCC-
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGC-CNDETTHKFKGKTVMTEDERYESLR-HCKWVD-EVIP--DAPW- 95 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV-~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VD-eVVi--~ap~- 95 (319)
++++.|+|||+|.||+.++++|++.+ +.|+|+| +.+. -+ |..+.++.++|++|++ +++..+ .|.+ -..+
T Consensus 2 i~i~~GsFdp~H~GH~~l~~~a~~~~--d~v~v~v~~~~~-p~--~~~~~~~~~~R~~m~~~~~~~~~~~v~v~~~d~l~ 76 (168)
T 1f9a_A 2 RGFIIGRFQPFHKGHLEVIKKIAEEV--DEIIIGIGSAQK-SH--TLENPFTAGERILMITQSLKDYDLTYYPIPIKDIE 76 (168)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHTTTC--SEEEEEECSTTC-CS--SSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCS
T ss_pred EEEEEEecCCcCHHHHHHHHHHHHhC--CeEEEEEcCCCC-CC--CCCCCCCHHHHHHHHHHHHhcCCCceEEEeeCCcc
Confidence 68999999999999999999999997 7899998 4443 22 2235679999999999 466655 3422 1111
Q ss_pred --CchHHHHhhc--CCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEcccCC--CCChHHHHHHHHH
Q 020938 96 --VVTQEFLDKH--QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTD--GISTSDIIMRIVK 157 (319)
Q Consensus 96 --~~t~e~L~~~--kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~~rT~--giSTTdII~RIl~ 157 (319)
.....+++.+ ..++++.|.+. ....+...| .++.++..+ .+|||.|++++..
T Consensus 77 ~~~~w~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~~~~ 135 (168)
T 1f9a_A 77 FNSIWVSYVESLTPPFDIVYSGNPL----------VRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLN 135 (168)
T ss_dssp CGGGHHHHHHHHSCCCSEEECCCHH----------HHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCEEEECcHH----------HHHhhhhcCcEEEeCCccccCcccHHHHHHHHHc
Confidence 1112333332 44666554311 112233344 445555543 5999999887753
No 27
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.31 E-value=1.3e-11 Score=107.14 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=80.7
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCC----ccccc-C-C
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWV----DEVIP-D-A 93 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~V----DeVVi-~-a 93 (319)
+++++.|+||++|.||+.++++|++.+ +.|+|+|.+....+ |..++++.++|++|++. +... +.+.+ + .
T Consensus 4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~--d~v~v~v~~~~~p~--~~~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~~~d 79 (181)
T 1ej2_A 4 MRGLLVGRMQPFHRGHLQVIKSILEEV--DELIICIGSAQLSH--SIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQ 79 (181)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHTTTC--SEEEEEECSTTCCS--SSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred eEEEEEEEcCCcCHHHHHHHHHHHHhC--CeeEEEECCCCCCc--CCCCCCCHHHHHHHHHHHHhhCCCCCCcEEEEecC
Confidence 479999999999999999999999996 78999995543222 23567899999999985 4433 45543 1 1
Q ss_pred CCC---chHHHHhhc--CCcEEEecCCcccccCCCcchHHHHHHhcC-eEEEcccCC--CCChHHHHHHHHH
Q 020938 94 PWV---VTQEFLDKH--QIDFVAHDSLPYADASGAGKDVYEFVKAAG-KFKETKRTD--GISTSDIIMRIVK 157 (319)
Q Consensus 94 p~~---~t~e~L~~~--kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G-~~~~~~rT~--giSTTdII~RIl~ 157 (319)
.+. ...++++.+ .+++++.|.+. ....+...| .++.++... .+|||.|++++..
T Consensus 80 ~~~~~~~w~~~~~~l~~~~~~~v~gr~~----------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~l~~ 141 (181)
T 1ej2_A 80 DIECNALWVGHIKMLTPPFDRVYSGNPL----------VQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLD 141 (181)
T ss_dssp CCSCHHHHHHHHHHHSCCCSEEECCCHH----------HHHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHCCCCCEEEECCHH----------HHHHHHhCCeEEEecCCCccCcCcHHHHHHHHHc
Confidence 111 123444442 56777766421 112344455 455566544 4999999877653
No 28
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=99.25 E-value=3.2e-11 Score=115.92 Aligned_cols=144 Identities=12% Similarity=0.069 Sum_probs=96.3
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCC-CeEEEEeccCccccc----cC-CCCCCCHHHHHHHHHhccCCcccccCCC-
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPN-TYLLVGCCNDETTHK----FK-GKTVMTEDERYESLRHCKWVDEVIPDAP- 94 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~g-d~LIVGV~sDe~v~~----~K-GrPV~s~eER~e~V~a~k~VDeVVi~ap- 94 (319)
.|++-|+||.+|.||..+|++|++.+.. ...+|+|+.|+.... .+ .+++++.++|+++|+++. ||.|++...
T Consensus 17 ~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~g-VD~v~v~~F~ 95 (338)
T 2x0k_A 17 SAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESFG-IDGVLVIDFT 95 (338)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHTT-CSEEEEECTT
T ss_pred eEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhcC-CCEEEEcccc
Confidence 6899999999999999999999987411 124788888863221 11 146999999999999987 999876211
Q ss_pred ---CCc-hHHHHhh-----cCCcEEEecCCcccccCCCcc--hHHHHHHhcC-eEEEccc----CCCCChHHHHHHHHHh
Q 020938 95 ---WVV-TQEFLDK-----HQIDFVAHDSLPYADASGAGK--DVYEFVKAAG-KFKETKR----TDGISTSDIIMRIVKD 158 (319)
Q Consensus 95 ---~~~-t~e~L~~-----~kpD~VvhG~d~y~d~~~~~~--D~y~~lK~~G-~~~~~~r----T~giSTTdII~RIl~~ 158 (319)
..+ ..+|++. ++++++|.|.|+.......++ .+.+..++ | .+..++. ...+|||.|++.|..-
T Consensus 96 ~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~r~g~~~~L~~~~~~-g~~V~~v~~~~~~~~~ISST~IR~~L~~G 174 (338)
T 2x0k_A 96 RELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQS-RLTVDVIDLLDDEGVRISSTTVREFLSEG 174 (338)
T ss_dssp TSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGGGCEEHHHHHHHTTT-TSEEEEECCCEETTEECSHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCCCCCCHHHHHHHhcC-CeEEEEECcEecCCcccccchHHHHHhcC
Confidence 112 3457765 689999999987654322222 22222333 5 5666665 4579999998888655
Q ss_pred hHHHHHHHh
Q 020938 159 YNQYVMRNL 167 (319)
Q Consensus 159 yd~y~~Rnl 167 (319)
--.-..+-|
T Consensus 175 ~i~~a~~lL 183 (338)
T 2x0k_A 175 DVARANWAL 183 (338)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHhc
Confidence 433344444
No 29
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.18 E-value=4.5e-11 Score=110.54 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=81.8
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc-cCC--ccccc--CCC
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-KWV--DEVIP--DAP 94 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~-k~V--DeVVi--~ap 94 (319)
|+++++.|+|||+|.||+.++++|++.+ +.++|+|+++..-++ | ...++.++|++|++.+ ... +.|++ .+.
T Consensus 7 ~~~~i~~G~FdP~H~GH~~li~~a~~~~--d~v~v~v~~~~~p~~-~-~~~~~~~~R~~m~~~~~~~~~~~~~~~i~~~d 82 (341)
T 2qjo_A 7 YQYGIYIGRFQPFHLGHLRTLNLALEKA--EQVIIILGSHRVAAD-T-RNPWRSPERMAMIEACLSPQILKRVHFLTVRD 82 (341)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHE--EEEEEEEEEETCCCC-S-SSCSCHHHHHHHHHTTSCHHHHTTEEEEEEEC
T ss_pred eeEEEEEEEeCCCCHHHHHHHHHHHHhC--CeEEEEECCcccCCC-C-CCCCCHHHHHHHHHHHhhhccCCeEEEEECCC
Confidence 5689999999999999999999999997 789998988754332 2 3458999999999954 332 22332 211
Q ss_pred -------CCc-hHHHHhhcC---CcEEEecCCcccccCCCcchHHHHHHhc-C-eEEEcccCCCCChHHHHHHHHH
Q 020938 95 -------WVV-TQEFLDKHQ---IDFVAHDSLPYADASGAGKDVYEFVKAA-G-KFKETKRTDGISTSDIIMRIVK 157 (319)
Q Consensus 95 -------~~~-t~e~L~~~k---pD~VvhG~d~y~d~~~~~~D~y~~lK~~-G-~~~~~~rT~giSTTdII~RIl~ 157 (319)
|.- ..+++..+. +++++.|.+... ... ..+.. | .++.++....+|||.|+++|..
T Consensus 83 ~~~~~~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~------~~~--~~~~~~~~~~~~~~~~~~iSST~IR~~l~~ 150 (341)
T 2qjo_A 83 WLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDA------SSY--YLNLFPQWDYLETGHYPDFSSTAIRGAYFE 150 (341)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCSCEEEEECCCSG------GGG--GGGSCTTSEEEECCCCTTCCHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHhHHhcCCCceEEEEcCCCCC------ChH--HHHhccccceeecccCCCCCcHHHHHHHHc
Confidence 111 112333332 677877754211 011 11222 3 5566676678999999888754
No 30
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=99.16 E-value=8.2e-11 Score=112.17 Aligned_cols=147 Identities=17% Similarity=0.096 Sum_probs=99.3
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCC-eEEEEeccCcccc---cc---CC-CCCCCHHHHHHHHHhccCCcccccCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNT-YLLVGCCNDETTH---KF---KG-KTVMTEDERYESLRHCKWVDEVIPDA 93 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd-~LIVGV~sDe~v~---~~---KG-rPV~s~eER~e~V~a~k~VDeVVi~a 93 (319)
.|++-|+||.+|.||..+|++|++++... .-.|.++-|+.-. .. +. +++++.++|+++++++. ||.+++-.
T Consensus 22 ~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~lG-VD~v~~~~ 100 (308)
T 3op1_A 22 SVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKREG-VEELYLLD 100 (308)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHHT-CCEEEEEC
T ss_pred eEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHcC-CCEEEEec
Confidence 59999999999999999999999886221 1245566665221 11 11 36999999999999998 99998621
Q ss_pred CC-----CchHHH----HhhcCCcEEEecCCcccccCCCcchHHHHHHhcC--eEEEccc----CCCCChHHHHHHHHHh
Q 020938 94 PW-----VVTQEF----LDKHQIDFVAHDSLPYADASGAGKDVYEFVKAAG--KFKETKR----TDGISTSDIIMRIVKD 158 (319)
Q Consensus 94 p~-----~~t~e~----L~~~kpD~VvhG~d~y~d~~~~~~D~y~~lK~~G--~~~~~~r----T~giSTTdII~RIl~~ 158 (319)
.. ....+| +.++++..+|.|.|..... ..|+ .+.|++.| .+..++. ...||||.|++-|..-
T Consensus 101 F~~~~a~ls~e~Fv~~ll~~l~~~~ivvG~DfrFG~-r~G~--~~~L~~~~~~~V~~v~~~~~~~~~ISST~IR~~L~~G 177 (308)
T 3op1_A 101 FSSQFASLTAQEFFATYIKAMNAKIIVAGFDYTFGS-DKKT--AEDLKNYFDGEVIIVPPVEDEKGKISSTRIRQAILDG 177 (308)
T ss_dssp CCHHHHTCCHHHHHHHHHHHHTEEEEEEETTCCBTT-TTBC--STTHHHHCSSEEEEECCCBCSSCBCCHHHHHHHHHHT
T ss_pred CCHHHHcCCHHHHHHHHHHHcCCCEEEECcCCCCCC-cCCC--HHHHHHhCCCCEEEeCCEecCCceEeHHHHHHHHHcC
Confidence 10 112344 4578999999999875543 3222 23466665 3666664 4579999999888765
Q ss_pred hHHHHHHHhhcCCc
Q 020938 159 YNQYVMRNLDRGYS 172 (319)
Q Consensus 159 yd~y~~Rnl~rG~~ 172 (319)
--.-..+-|-|-|+
T Consensus 178 ~v~~A~~lLGrpy~ 191 (308)
T 3op1_A 178 NVKEAGKLLGAPLP 191 (308)
T ss_dssp CHHHHHHHHSSCCE
T ss_pred CHHHHHhhcCccee
Confidence 55555555555444
No 31
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=99.13 E-value=8.8e-11 Score=109.80 Aligned_cols=85 Identities=22% Similarity=0.152 Sum_probs=57.7
Q ss_pred CCCeEEEEcCccCcCChHHHHHHHHHhhhCCCC---eEEEEeccCccccccCCCCCCCHHHHHHHHHh-ccCCcccccC-
Q 020938 18 DRPVRVYADGIYDLFHFGHARSLEQAKKSFPNT---YLLVGCCNDETTHKFKGKTVMTEDERYESLRH-CKWVDEVIPD- 92 (319)
Q Consensus 18 ~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd---~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a-~k~VDeVVi~- 92 (319)
..++++++.|+|||+|.||+.++++|++.++.+ .++|++-.-......| .++++.++|++|++. +..++.+.+.
T Consensus 6 ~~~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~K-~~l~s~~~R~~ml~~ai~~~~~~~v~~ 84 (279)
T 1kqn_A 6 KTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKK-KGLIPAYHRVIMAELATKNSKWVEVDT 84 (279)
T ss_dssp CEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCC-TTCCCHHHHHHHHHHHTTTCSSEEECC
T ss_pred CCceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCccc-cCCCCHHHHHHHHHHHhcCCCcEEEec
Confidence 346689999999999999999999999876333 3665542211111223 468999999999994 5666666542
Q ss_pred -----CCCCchHHHHh
Q 020938 93 -----APWVVTQEFLD 103 (319)
Q Consensus 93 -----ap~~~t~e~L~ 103 (319)
..|..|.+.|+
T Consensus 85 ~E~~~~~~syTidtL~ 100 (279)
T 1kqn_A 85 WESLQKEWKETLKVLR 100 (279)
T ss_dssp TGGGCSSCCCHHHHHH
T ss_pred cccccCCCCcHHHHHH
Confidence 23555665553
No 32
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=99.06 E-value=2.7e-10 Score=104.35 Aligned_cols=87 Identities=22% Similarity=0.295 Sum_probs=57.3
Q ss_pred CCeEEEEcCccCcCChHHHHHHHHHhhhCCCC--eEEEEeccCccccccCCCCCCCHHHHHHHHH-hccCCccccc----
Q 020938 19 RPVRVYADGIYDLFHFGHARSLEQAKKSFPNT--YLLVGCCNDETTHKFKGKTVMTEDERYESLR-HCKWVDEVIP---- 91 (319)
Q Consensus 19 r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd--~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~-a~k~VDeVVi---- 91 (319)
.++++++.|+|||+|.||+.++++|++.++.+ ..||||.-.+.....+..++++.++|++|++ ++...+.+.+
T Consensus 5 ~~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~~~~~~v~~~E 84 (252)
T 1nup_A 5 IPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWIRVDPWE 84 (252)
T ss_dssp EEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSEEECCHH
T ss_pred CceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcCCCceEeehHH
Confidence 36789999999999999999999999886323 3666543322211222246899999999998 4555444433
Q ss_pred --CCCCCchHHHHhhc
Q 020938 92 --DAPWVVTQEFLDKH 105 (319)
Q Consensus 92 --~ap~~~t~e~L~~~ 105 (319)
...+..|.+.|+.+
T Consensus 85 ~~~~~~syTidtL~~l 100 (252)
T 1nup_A 85 SEQAQWMETVKVLRHH 100 (252)
T ss_dssp HHSSSCCCHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHH
Confidence 12244455555444
No 33
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=98.97 E-value=3.6e-10 Score=105.36 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=50.8
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHh
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRH 82 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a 82 (319)
|+++++.|+|||+|.||+.++++|+++| |.|||+|.++...++ .++.+|.++|++||+.
T Consensus 7 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~--d~~~~~v~~~~~~~~--~~~~~~~~~R~~m~~~ 65 (352)
T 2qjt_B 7 YDISVFIGRFQPFHKGHLHNIIIALQNS--KKVIINIGSCFNTPN--IKNPFSFEQRKQMIES 65 (352)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHSE--EEEEEEEEEESCCCC--SSSCSCHHHHHHHHHH
T ss_pred ccEEEEEEecCCCChHHHHHHHHHHHhC--CcEEEEECCCCCCcc--cCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999997 799999998754332 2467899999999995
No 34
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=98.58 E-value=1.6e-07 Score=91.20 Aligned_cols=145 Identities=19% Similarity=0.262 Sum_probs=96.3
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCcc--ccccCCCC-CCCHHHHHHHHHhccCCcccccCCC-C
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDET--THKFKGKT-VMTEDERYESLRHCKWVDEVIPDAP-W 95 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~--v~~~KGrP-V~s~eER~e~V~a~k~VDeVVi~ap-~ 95 (319)
+.+|.+-|.||+||.||..+|++|++ . + ++++|.+-.. +. +|.| +++..+|++++..+ .||.|+.-+. +
T Consensus 52 ~~~v~~lG~FDg~H~GHq~lI~~a~~-~--~-~~~~Vms~~~~~vq--rg~~~l~~~~~R~~~~~~~-GvD~vielpF~~ 124 (357)
T 3gmi_A 52 DKIVCDFTEYNPLHKGHKYALEKGKE-H--G-IFISVLPGPLERSG--RGIPYFLNRYIRAEMAIRA-GADIVVEGPPMG 124 (357)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHHT-S--S-EEEEEECCTTSBCT--TSSBCSSCHHHHHHHHHHH-TCSEEEECCCGG
T ss_pred CCEEEEEEecCccCHHHHHHHHHHHH-c--C-CeEEEEcCchHHhc--CCCCcCCCHHHHHHHHHHC-CCCEEEEcCchh
Confidence 34799999999999999999999999 3 3 6666666444 44 3444 89999999999998 7999886322 2
Q ss_pred C-chHHHH-------hhcCCcEEEecCCcccc--------cCC------------------------CcchH-HH---HH
Q 020938 96 V-VTQEFL-------DKHQIDFVAHDSLPYAD--------ASG------------------------AGKDV-YE---FV 131 (319)
Q Consensus 96 ~-~t~e~L-------~~~kpD~VvhG~d~y~d--------~~~------------------------~~~D~-y~---~l 131 (319)
. .+.+|+ ..++++.||.|..+..+ ..+ ..+++ .+ .+
T Consensus 125 ~~s~~~Fv~~~v~ll~~l~~~~iv~G~~~~~~~~~~~~~i~~~~~~~~kp~~~~g~ey~~~~~~~l~~pn~il~~y~kai 204 (357)
T 3gmi_A 125 IMGSGQYMRCLIKMFYSLGAEIIPRGYIPEKTMEKVIDCINKGYHIQVKPYKIICIETGEILGEKLNIDNYVIASMSQMI 204 (357)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHTTCCEEEETTEEEETTTCCEEESCCCGGGHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEECCCCchhHHHHHHHHhcccccccccchhccCcHHHHHHHhccCCChHHHHHHHHH
Confidence 2 223444 45799999999722111 000 01111 11 12
Q ss_pred HhcC--------eEEEcccCCCCChHHHHHHHHHh-hH-----------HHHHHHhhcCC
Q 020938 132 KAAG--------KFKETKRTDGISTSDIIMRIVKD-YN-----------QYVMRNLDRGY 171 (319)
Q Consensus 132 K~~G--------~~~~~~rT~giSTTdII~RIl~~-yd-----------~y~~Rnl~rG~ 171 (319)
.+.| .++.+||...+|.|.|++.|... ++ .|+.+.++.|-
T Consensus 205 ~~~~~~~~~~~i~~~~i~R~~~~SAS~IR~~i~~g~~~~~~~lVP~~t~~~l~~~~~~G~ 264 (357)
T 3gmi_A 205 YKLNREGLKFNPKFVFVKRLEGISGTKIREAIFSGKFEDIKNMLPKTTLSILKELYDNGK 264 (357)
T ss_dssp HHHHHTTCCCCCEEEEEECSCCCCHHHHHHHHHTTCGGGTGGGSCHHHHHHHHHHHHTTC
T ss_pred HHhCcCcCCCCCeEEEecCCCcccHHHHHHHHHcCChhHHHhcCChHHHHHHHHHHhcCC
Confidence 2212 67778998899999998888764 11 46666666664
No 35
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=98.50 E-value=2.7e-07 Score=87.01 Aligned_cols=70 Identities=11% Similarity=0.079 Sum_probs=54.4
Q ss_pred CeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCc--cccccC-CCCCCCHHHHHHHHHhccCCcccccCC
Q 020938 20 PVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDE--TTHKFK-GKTVMTEDERYESLRHCKWVDEVIPDA 93 (319)
Q Consensus 20 ~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe--~v~~~K-GrPV~s~eER~e~V~a~k~VDeVVi~a 93 (319)
.+++++ |+||.+|.||+.+|++|++.+ +.+||++..++ +..... .+.+.+.++|+++++++. ||.|+++.
T Consensus 22 ~~V~~v-gtfdgLH~GH~sLI~~A~~~a--d~vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~~G-VD~vf~p~ 94 (280)
T 2ejc_A 22 KTIGFV-PTMGYLHEGHLSLVRRARAEN--DVVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEKEN-VDCIFHPS 94 (280)
T ss_dssp CCEEEE-EECSCCCHHHHHHHHHHHHHS--SEEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHTTT-CSEEECCC
T ss_pred CEEEEE-cCCccccHHHHHHHHHHHHhC--CEEEEEEeCChHHhcCCcccccCCCCHHHHHHHHHHCC-CCEEEeCC
Confidence 345666 999999999999999999995 79999995543 332211 123678999999999998 99998853
No 36
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=97.20 E-value=0.0012 Score=62.17 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=52.9
Q ss_pred eEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC---CCCCCHHHHHHHHHhccCCcccccC
Q 020938 21 VRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG---KTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 21 ~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG---rPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
..|.+-|. +|.||..++++|++.+ +.+||.+..++..--... +.+.+.++|+++++++. ||.|+..
T Consensus 20 ~~VpTmG~---lH~GH~~Li~~A~~~a--~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~G-vD~vf~p 88 (276)
T 1v8f_A 20 GFVPTMGY---LHRGHLALVERARREN--PFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEAG-VDLLFAP 88 (276)
T ss_dssp EEEEECSS---CCHHHHHHHHHHHHHC--SEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHTT-CSEEECC
T ss_pred eEEEeCCC---ccHHHHHHHHHHHHhC--CEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhCC-CCEEEeC
Confidence 35778888 9999999999999996 789999988865322111 35899999999999986 9988864
No 37
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=97.15 E-value=0.0017 Score=63.70 Aligned_cols=91 Identities=13% Similarity=0.032 Sum_probs=57.5
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc-cC-C--ccccc---CCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-KW-V--DEVIP---DAP 94 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~-k~-V--DeVVi---~ap 94 (319)
.|++.|+|||+|.||..+.++|...++.|.|++--.-.. .| .--.+.+.|+++++.+ .. . +.|++ +.+
T Consensus 194 ~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g~----~K-~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p~~ 268 (396)
T 1jhd_A 194 KVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK----LK-KGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFD 268 (396)
T ss_dssp SEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC----CC-TTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECC
T ss_pred eEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCCC----CC-CCCCCHHHHHHHHHHHHHhcCCCcceEEEechHH
Confidence 477799999999999999999998864454443322222 12 3368999999999864 22 1 22322 111
Q ss_pred ---CCchHHH----H-hhcCCcEEEecCCcc
Q 020938 95 ---WVVTQEF----L-DKHQIDFVAHDSLPY 117 (319)
Q Consensus 95 ---~~~t~e~----L-~~~kpD~VvhG~d~y 117 (319)
-+++.-+ + +.+++.+++.|.|..
T Consensus 269 m~~aGPreailhaiirkn~G~t~fIVGrDha 299 (396)
T 1jhd_A 269 MLYAGPREAVLHAYFRQNMGATHFIIGRDHA 299 (396)
T ss_dssp CCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred hhcCCchHHHHHHHHHHcCCCcEEEECCCCC
Confidence 1112221 2 346889999998763
No 38
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=96.40 E-value=0.011 Score=55.70 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=49.4
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC---CCCCCHHHHHHHHHhccCCcccccC
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG---KTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG---rPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
|.+-|. +|.||..++++|++.+ +.+||.+...+.---... ..+.+.++++++++.+. ||.|+.+
T Consensus 28 VpTmG~---lH~GH~~LI~~a~~~a--~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~G-vD~vf~p 94 (283)
T 3ag6_A 28 IPTMGA---LHDGHLTMVRESVSTN--DITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVG-ADIVFHP 94 (283)
T ss_dssp EEECSS---CCHHHHHHHHHHHTTS--SEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHHT-CSEEECC
T ss_pred EECCcc---ccHHHHHHHHHHHHhC--CEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhCC-CCEEEeC
Confidence 447786 9999999999999995 788888877654221111 23789999999999885 9988874
No 39
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=96.14 E-value=0.011 Score=56.15 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=47.9
Q ss_pred CccCcCChHHHHHHHHHhh-hCCCCeEEEEeccCccccccCC---CCCCCHHHHHHHHHhccCCcccccC
Q 020938 27 GIYDLFHFGHARSLEQAKK-SFPNTYLLVGCCNDETTHKFKG---KTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 27 G~FDLfH~GHi~~LeqAKk-lf~gd~LIVGV~sDe~v~~~KG---rPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
+++.-+|.||+.++++|++ .+ +.+||.+..++.---... +.+.+.++++++++.+. ||.|+.+
T Consensus 39 pTmG~LH~GH~sLI~~A~~~~a--~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~G-VD~vf~p 105 (301)
T 3cov_A 39 PTMGALHEGHLALVRAAKRVPG--SVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEG-VEIAFTP 105 (301)
T ss_dssp EECSCCCHHHHHHHHHHHTSTT--EEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHTT-CCEEECC
T ss_pred ecCCcccHHHHHHHHHHHHhcC--CEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhCC-CCEEEeC
Confidence 4455599999999999999 75 789999877654221111 23889999999999885 8988874
No 40
>1pei_A PEPC22; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=96.07 E-value=0.0014 Score=41.31 Aligned_cols=19 Identities=11% Similarity=0.361 Sum_probs=14.7
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q 020938 215 MHRNEWVENADRWVAGFLE 233 (319)
Q Consensus 215 ~~~~~w~~~~~~~~~~f~~ 233 (319)
+++++|+++|++||.+||.
T Consensus 8 eliskWe~kSre~I~~Fl~ 26 (26)
T 1pei_A 8 DLIQKWEEKSREFIGSXXX 26 (26)
T ss_dssp HHTTHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHcccC
Confidence 4679999999999999984
No 41
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=95.15 E-value=0.025 Score=53.58 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=44.2
Q ss_pred eEEE--EcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC----CCCCCHHHHHHHHHhccCCcccccC
Q 020938 21 VRVY--ADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG----KTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 21 ~rVy--~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG----rPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
++++ +-|+ ||.||+.++++|++.+ |.+||+|--++.--. .+ +-.-+++.=++++..+ .||.|+.+
T Consensus 26 ~IgfVPTMG~---LH~GHlsLv~~Ar~~~--d~vVVSIFVNP~QF~-~~EDl~~YPRtle~D~~~l~~~-gvd~vF~P 96 (287)
T 3q12_A 26 RIALVPTMGN---LHEGHMTLVDEAKTRA--DVVVVTIFVNPLQFE-RPDDLAHYPRTLQEDCEKLTRH-GADLVFAP 96 (287)
T ss_dssp CEEEEEECSS---CCHHHHHHHHHHHTTS--SEEEEEECCCGGGCS-SHHHHHHSCCCHHHHHHHHHHH-TCSEEECC
T ss_pred eEEEEcCCCc---ccHHHHHHHHHHHHhC--CEEEEEeccCcccCC-CcchhhcCCCCHHHHHHHHHHC-CCCEEECC
Confidence 4566 7786 9999999999999995 899999977653110 00 1244556556666655 47766653
No 42
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=95.15 E-value=0.073 Score=51.03 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=48.1
Q ss_pred eEEE--EcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccC---CCCCCCHHHHHHHHHhccCCcccccC
Q 020938 21 VRVY--ADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFK---GKTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 21 ~rVy--~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~K---GrPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
++++ +-|. +|.||+.++++|++.+ +.+||.|--++.--... .+..-+++..++++..+ .||.|+.+
T Consensus 44 ~IgfVPTMG~---LH~GHlsLi~~A~~~~--d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~-GvD~vF~P 114 (314)
T 3inn_A 44 KIGFVPTMGY---LHKGHLELVRRARVEN--DVTLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDA-QVDYLFAP 114 (314)
T ss_dssp CEEEEEECSS---CCHHHHHHHHHHHHHC--SEEEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT-TCSEEECC
T ss_pred eEEEEcCCCc---cCHHHHHHHHHHHHhC--CEEEEEECCChhhcCCCccccccCCCHHHHHHHHHhC-CCCEEECC
Confidence 4555 7784 9999999999999995 89999997765421100 12467888888888876 47877654
No 43
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=94.96 E-value=0.038 Score=53.29 Aligned_cols=89 Identities=10% Similarity=-0.075 Sum_probs=57.5
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc-cCC---ccccc-CCCCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC-KWV---DEVIP-DAPWV 96 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~-k~V---DeVVi-~ap~~ 96 (319)
.|++.|+|||+|.||..+.++|.... |.|++--.-.. .| .--.+.+-|++|++.+ ... +.|++ ..|+.
T Consensus 157 ~VvafqTrNPiHrgH~~l~~~ale~~--d~vll~P~~g~----~K-~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~~ 229 (349)
T 1v47_A 157 KVVAFQTRNAPHRAHEYLIRLGLELA--DGVLVHPILGA----KK-PDDFPTEVIVEAYQALIRDFLPQERVAFFGLATP 229 (349)
T ss_dssp SEEEEEESSCCCHHHHHHHHHHHHHS--SEEEEEEBCSC----CC-TTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSC
T ss_pred eEEEeecCCCCchHHHHHHHHHHHhC--CcEEEEECCCC----CC-CCCCCHHHHHHHHHHHHhhcCCCcceEEEechHH
Confidence 47778999999999999999999985 65555333222 12 3469999999999964 221 22322 12211
Q ss_pred -----chHHHH-----hhcCCcEEEecCCcc
Q 020938 97 -----VTQEFL-----DKHQIDFVAHDSLPY 117 (319)
Q Consensus 97 -----~t~e~L-----~~~kpD~VvhG~d~y 117 (319)
++.-++ +.+++.+++.|.|..
T Consensus 230 m~~aGPreailhaiirkn~G~t~fIVGrDha 260 (349)
T 1v47_A 230 MRYAGPKEAVFHALVRKNFGATHFLVGRDHA 260 (349)
T ss_dssp CCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred hhcCCcHHHHHHHHHHHcCCCcEEEECcCCC
Confidence 122222 346889999998753
No 44
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=93.99 E-value=0.083 Score=49.95 Aligned_cols=67 Identities=15% Similarity=0.016 Sum_probs=49.4
Q ss_pred EEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccC---CCCCCCHHHHHHHHHhccCCcccccC
Q 020938 23 VYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFK---GKTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 23 Vy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~K---GrPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
|-.-.+..-+|.||+.++++|++.+ +.+||.+--++..-... .+.+.+.+++++++..+ .||.|+.+
T Consensus 24 ig~VPTMG~LH~GH~sLi~~A~~~~--d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~-GvD~vF~P 93 (283)
T 3uk2_A 24 TAFVPTMGNLHEGHLSLMRLARQHG--DPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE-NVYVLFAP 93 (283)
T ss_dssp CEEEEECSSCCHHHHHHHHHHHTTC--SSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT-TCSEEECC
T ss_pred EEEECCCCcccHHHHHHHHHHHHhC--CEEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc-CCCEEEeC
Confidence 3344678899999999999999996 78999997766431100 13478999999998876 47777653
No 45
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=93.08 E-value=0.18 Score=47.72 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=41.4
Q ss_pred EcCccCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC----CCCCCHHHHHHHHHhccCCcccccC
Q 020938 25 ADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG----KTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 25 ~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG----rPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
+-|. ||.||+.++++|++ + |.+||.|--++.--. .+ +-.-+++.=++++.++ .||.|+.+
T Consensus 32 TMGa---LH~GHlsLv~~Ar~-~--d~VVVSIFVNP~QF~-~~EDl~~YPRtle~D~~ll~~~-gvD~vF~P 95 (285)
T 3mxt_A 32 TMGF---LHDGHLSLVKHAKT-Q--DKVIVSIFVNPMQFG-PNEDFSSYPRDLERDIKMCQDN-GVDMVFIP 95 (285)
T ss_dssp ECSS---CCHHHHHHHHHHTT-S--SEEEEEECCCGGGCC-TTSCTTTSCCCHHHHHHHHHHT-TCSEEECC
T ss_pred CCCc---ccHHHHHHHHHHHh-C--CEEEEEeccCccccC-CchhhhcCCCCHHHHHHHHHHC-CCCEEECC
Confidence 4564 99999999999999 6 899999976654111 11 2345666666776665 47766653
No 46
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=89.73 E-value=0.28 Score=46.02 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=40.3
Q ss_pred cCcCChHHHHHHHHHhhhCCCCeEEEEeccCccccccCC----CCCCCHHHHHHHHHhccCCcccccC
Q 020938 29 YDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKG----KTVMTEDERYESLRHCKWVDEVIPD 92 (319)
Q Consensus 29 FDLfH~GHi~~LeqAKklf~gd~LIVGV~sDe~v~~~KG----rPV~s~eER~e~V~a~k~VDeVVi~ 92 (319)
-=-||-||+.++++|++.+ |.+||.|--++.--. .+ +-.-+++.=++++..+ .||.|+.+
T Consensus 32 MGaLH~GHlsLv~~Ar~~~--d~vVVSIFVNP~QF~-~~EDl~~YPRtle~D~~ll~~~-gvD~vF~P 95 (264)
T 3n8h_A 32 MGALHNGHISLIKKAKSEN--DVVIVSIFVNPTQFN-NPNDYQTYPNQLQQDIQILASL-DVDVLFNP 95 (264)
T ss_dssp CSSCCHHHHHHHHHHHHHC--SEEEEEECCCGGGCS-CHHHHHHSCCCHHHHHHHHHHT-TCSEEECC
T ss_pred CcchhHHHHHHHHHHHHhC--CEEEEEEccCcccCC-CcchhhcCCCCHHHHHHHHHHC-CCCEEECC
Confidence 3379999999999999995 899999977653110 00 1245556666666655 47766653
No 47
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=84.21 E-value=10 Score=38.11 Aligned_cols=88 Identities=11% Similarity=-0.001 Sum_probs=52.7
Q ss_pred EEEEcCccCcCChHHHHHHHHHh-hhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhcc--CC-ccccc-CCCCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAK-KSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCK--WV-DEVIP-DAPWV 96 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAK-klf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k--~V-DeVVi-~ap~~ 96 (319)
.|++..+++|+|.||..+|.+|+ ..++ ..||.-+.. ..| .-=++.+-|+++.+++- |. +.|++ ..|+.
T Consensus 190 ~v~afqtrnP~HraH~e~~~~~a~e~~~-~lll~pl~g-----~~k-~~di~~~~r~~~~~~~~~~yp~~~~~l~~~p~~ 262 (511)
T 1g8f_A 190 RVVAFQTRNPMHRAHRELTVRAAREANA-KVLIHPVVG-----LTK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLA 262 (511)
T ss_dssp CEEEEEESSCCCHHHHHHHHHHHHHHTC-EEEEEEBCS-----BCS-TTCCCHHHHHHHHHHHGGGSCTTSEEECCBCCB
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHcCC-cEEEEECCC-----CCC-CCCCCHHHHHHHHHHHHHhCCcccEEEEecchh
Confidence 47778999999999976666655 5452 234433322 112 12489999999988763 32 33332 22321
Q ss_pred -----chHH-----HHhhcCCcEEEecCCc
Q 020938 97 -----VTQE-----FLDKHQIDFVAHDSLP 116 (319)
Q Consensus 97 -----~t~e-----~L~~~kpD~VvhG~d~ 116 (319)
+..- +-+.+++..++.|-|+
T Consensus 263 m~yaGprea~~hai~r~n~G~th~IvGrdh 292 (511)
T 1g8f_A 263 MRMSGDREAVWHAIIRKNYGASHFIVGRDH 292 (511)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCSEEECCTTT
T ss_pred hhccCcHHHHHHHHHHHhCCCceEEeCCCC
Confidence 1112 2245799999998754
No 48
>1peh_A Pepnh1; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=82.23 E-value=0.01 Score=39.49 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020938 181 VKEKRLRVNMKLKKLQEKVKQQQERVGEKIQTVA 214 (319)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (319)
+.++++.||+.+++++++++++.++++++++.++
T Consensus 1 InEKky~lQ~~VDk~K~kvk~VEeksK~~V~~vE 34 (35)
T 1peh_A 1 XNEKKYHLQERVDKVKKKVKDVEEKSKEWVQKVE 34 (35)
T ss_dssp -CCTTTCCSSSTTGGGGGTTGGGTTTHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3578899999999999999999999988887653
No 49
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=71.11 E-value=19 Score=29.75 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=34.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHH
Q 020938 181 VKEKRLRVNMKLKKLQEKVKQQQERVGEK----IQTVAMHRNEWVENADRWVAG 230 (319)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~~~~~~~ 230 (319)
+...+.+|...|..+++++..+.....-. ...+..|+.+|+.-|+....-
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaee 58 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEV 58 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888887765533322 245667999999998765543
No 50
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=61.58 E-value=56 Score=30.02 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEcCccCcCChHHHHHHHHHhhhCCCCeEEEEecc
Q 020938 4 ANSNNSNSTDTAPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCN 58 (319)
Q Consensus 4 ~~~~~~~~~~~~~~~r~~rVy~~G~FDLfH~GHi~~LeqAKklf~gd~LIVGV~s 58 (319)
.|++|+..+.++..+++.+|-+-|+= +.|...++...++. | ..-+|+|++
T Consensus 11 ~~~~~~~~~~~~~~m~~~rigiIG~G---~~g~~~~~~~l~~~-~-~~~l~av~d 60 (350)
T 3rc1_A 11 ENLYFQGHMENPANANPIRVGVIGCA---DIAWRRALPALEAE-P-LTEVTAIAS 60 (350)
T ss_dssp ---------------CCEEEEEESCC---HHHHHTHHHHHHHC-T-TEEEEEEEE
T ss_pred cceeeeccCCCCCCCCceEEEEEcCc---HHHHHHHHHHHHhC-C-CeEEEEEEc
Confidence 47788888888888888778777861 12221223333333 3 345677764
No 51
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=56.68 E-value=17 Score=36.36 Aligned_cols=87 Identities=13% Similarity=-0.046 Sum_probs=53.5
Q ss_pred EEEEcCccCcCChHHHHHHHHHhh-hCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc--cC--Cccccc-CCC-
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKK-SFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC--KW--VDEVIP-DAP- 94 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKk-lf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~--k~--VDeVVi-~ap- 94 (319)
.|++.=++.|+|.||..++++|.. .+ +.|+|-...- ..| ..-++.+-|+..++++ .| -+.|++ ..|
T Consensus 165 ~v~afqtrnP~Hr~H~~l~~~a~~~~~--~~llv~p~~g----~~k-~~di~~~~R~~~~~~~~~~~~p~~~v~~~~~p~ 237 (546)
T 2gks_A 165 KIVAFQTRNPMHRVHEELTKRAMEKVG--GGLLLHPVVG----LTK-PGDVDVYTRMRIYKVLYEKYYDKKKTILAFLPL 237 (546)
T ss_dssp CEEEECCSSCCCHHHHHHHHHHHHHHT--SEEEECCBCS----BCC-TTSCCHHHHHHHHHHHHHHHSCTTTEEECBBCC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHhcC--CcEEEEeCcC----CCC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEeecCc
Confidence 477788999999999999999996 66 4454432221 112 1257999999998877 12 133332 112
Q ss_pred --------CCchHH-HHhhcCCcEEEecCC
Q 020938 95 --------WVVTQE-FLDKHQIDFVAHDSL 115 (319)
Q Consensus 95 --------~~~t~e-~L~~~kpD~VvhG~d 115 (319)
+.+... +-+.+++..++.|-|
T Consensus 238 ~m~~agprea~~ha~ir~n~G~th~ivgrd 267 (546)
T 2gks_A 238 AMRMAGPREALWHGIIRRNYGATHFIVGRD 267 (546)
T ss_dssp BCCCCTHHHHHHHHHHHHHTTCSEEEECTT
T ss_pred hhhccCchHHHHHHHHHHhCCCCeEEECCC
Confidence 111112 235578888887843
No 52
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=55.78 E-value=9.8 Score=37.28 Aligned_cols=88 Identities=11% Similarity=-0.001 Sum_probs=51.7
Q ss_pred EEEEcCccCcCChHHHHHHHHHh-hhCCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhcc--CC-ccccc-CCCCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAK-KSFPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHCK--WV-DEVIP-DAPWV 96 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAK-klf~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~k--~V-DeVVi-~ap~~ 96 (319)
.|++..+++|+|.||..+|.+|+ ..++ ..||.-+.. ..| .-=++.+-|+++.+++- |. +.|++ .-|+.
T Consensus 189 ~VvafqtrNP~HraH~e~~~r~a~e~~~-~lllhPlvG-----~tK-~~Dip~~vR~~~~~~~l~~yp~~~v~l~~~p~~ 261 (395)
T 1r6x_A 189 RVVAFQTRNPMHRAHRELTVRAAREANA-KVLIHPVVG-----LTK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLA 261 (395)
T ss_dssp CEEEECCSSCCCHHHHHHHHHHHHHTTC-EEEECCBCS-----BCC-TTCCCHHHHHHHHHHHGGGSSTTCEEECCBCCB
T ss_pred cEEEeccCCCcchhhHHHHHHHHHHcCC-cEEEEECCC-----CCC-CCCCCHHHHHHHHHHHHHhCCCccEEEEecchh
Confidence 47788999999999977666665 4442 223322211 112 12589999999988763 32 33332 22211
Q ss_pred -----chHH-----HHhhcCCcEEEecCCc
Q 020938 97 -----VTQE-----FLDKHQIDFVAHDSLP 116 (319)
Q Consensus 97 -----~t~e-----~L~~~kpD~VvhG~d~ 116 (319)
+..- +-+.+++..++.|-|+
T Consensus 262 mryAGPrEai~HAiiRkN~GcthfIVGRDh 291 (395)
T 1r6x_A 262 MRMSGDREAVWHAIIRKNYGASHFIVGRDH 291 (395)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCSEEEECTTT
T ss_pred hhhcCcHHHHHHHHHHHHcCCceEEECCCC
Confidence 1222 2245799999998754
No 53
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=48.33 E-value=16 Score=36.89 Aligned_cols=87 Identities=13% Similarity=0.018 Sum_probs=53.3
Q ss_pred EEEEcCccCcCChHHHHHHHHHhhh-CCCCeEEEEeccCccccccCCCCCCCHHHHHHHHHhc--cCC-cccccC-CCCC
Q 020938 22 RVYADGIYDLFHFGHARSLEQAKKS-FPNTYLLVGCCNDETTHKFKGKTVMTEDERYESLRHC--KWV-DEVIPD-APWV 96 (319)
Q Consensus 22 rVy~~G~FDLfH~GHi~~LeqAKkl-f~gd~LIVGV~sDe~v~~~KGrPV~s~eER~e~V~a~--k~V-DeVVi~-ap~~ 96 (319)
.|++.=++.|+|.||..++++|... + +.|+|-...- ..| .--++.+-|+..++.+ .|. +.|++. .|+.
T Consensus 192 ~v~afqtrnP~Hr~H~~l~~~a~~~~~--~~llv~pl~g----~~k-~~di~~~~R~~~~~~~~~~~p~~~v~l~~~p~~ 264 (573)
T 1m8p_A 192 RVVAFQTRNPMHRAHRELTVRAARSRQ--ANVLIHPVVG----LTK-PGDIDHFTRVRAYQALLPRYPNGMAVLGLLGLA 264 (573)
T ss_dssp SEEEECCSSCCCHHHHHHHHHHHHHTT--CEEEECCBCC----CCC-TTCHHHHHHHHHHHHHGGGSSTTSEEECBBCCC
T ss_pred eEEEEeeCCCcchhhHHHHHHHHHhcC--CcEEEEeCCC----CCC-CCCCCHHHHHHHHHHHHHhCCCCcEEEEecCch
Confidence 3667789999999999999999865 5 4444432111 112 1247899999998886 232 233321 2211
Q ss_pred -----c-----hHHHHhhcCCcEEEecCC
Q 020938 97 -----V-----TQEFLDKHQIDFVAHDSL 115 (319)
Q Consensus 97 -----~-----t~e~L~~~kpD~VvhG~d 115 (319)
+ -.-+.+.+++..++.|-+
T Consensus 265 m~~agprea~~ha~ir~n~G~th~ivgrd 293 (573)
T 1m8p_A 265 MRMGGPREAIWHAIIRKNHGATHFIVGRD 293 (573)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCSEEEECTT
T ss_pred hhccCchHHHHHHHHHHHCCCCeEEECCC
Confidence 1 122445678888888854
No 54
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=47.57 E-value=9.5 Score=37.50 Aligned_cols=21 Identities=48% Similarity=0.767 Sum_probs=17.4
Q ss_pred CCCeEEEEcCcc--CcCChHHHH
Q 020938 18 DRPVRVYADGIY--DLFHFGHAR 38 (319)
Q Consensus 18 ~r~~rVy~~G~F--DLfH~GHi~ 38 (319)
...+++|++|.- +++|+||++
T Consensus 20 ~~~v~~yv~gPt~y~~~HiGHar 42 (461)
T 1li5_A 20 AGEVGMYVCGITVYDLCHIGHGR 42 (461)
T ss_dssp TTEEEEEECCCBSSSCCBHHHHH
T ss_pred CCCeeEEEcCCcCCCCCcccccH
Confidence 445778999966 999999997
No 55
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=46.60 E-value=10 Score=36.60 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=25.5
Q ss_pred CCCeEEEEcCcc--CcCChHHHH------HHHHHhhhCCCC-eEEEEe
Q 020938 18 DRPVRVYADGIY--DLFHFGHAR------SLEQAKKSFPNT-YLLVGC 56 (319)
Q Consensus 18 ~r~~rVy~~G~F--DLfH~GHi~------~LeqAKklf~gd-~LIVGV 56 (319)
.+++.+|+.|-+ +++|+||++ .|.+..++.+.+ ..+.|+
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~ 84 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNV 84 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCC
Confidence 455678999877 999999996 345555554222 344455
No 56
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=45.42 E-value=11 Score=37.57 Aligned_cols=30 Identities=33% Similarity=0.639 Sum_probs=21.6
Q ss_pred CCCeEEEEcC--ccCcCChHHHHH------HHHHhhhC
Q 020938 18 DRPVRVYADG--IYDLFHFGHARS------LEQAKKSF 47 (319)
Q Consensus 18 ~r~~rVy~~G--~FDLfH~GHi~~------LeqAKklf 47 (319)
...+.+|++| +++.+|+||++- |.+...+.
T Consensus 23 ~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~ 60 (462)
T 3tqo_A 23 SGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMR 60 (462)
T ss_dssp TTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHc
Confidence 4456788888 789999999863 44555554
No 57
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=45.24 E-value=39 Score=21.57 Aligned_cols=24 Identities=33% Similarity=0.710 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020938 189 NMKLKKLQEKVKQQQERVGEKIQT 212 (319)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~ 212 (319)
...+.+++.|+++-..++++++|-
T Consensus 3 rkrlrkfrnkikeklkkigqkiqg 26 (32)
T 1lyp_A 3 RKRLRKFRNKIKEKLKKIGQKIQG 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777777777777777764
No 58
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=41.55 E-value=0.91 Score=44.91 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=0.0
Q ss_pred CCCCCCCCCeEE
Q 020938 12 TDTAPSDRPVRV 23 (319)
Q Consensus 12 ~~~~~~~r~~rV 23 (319)
++|.|+..|.-+
T Consensus 17 ~aptp~ntp~~~ 28 (417)
T 2ayu_A 17 NAPTPHNTPASV 28 (417)
T ss_dssp ------------
T ss_pred CCCCCCCCcccc
Confidence 566676666544
No 59
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.52 E-value=1.3e+02 Score=29.46 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020938 181 VKEKRLRVNMKLKKLQEKVKQQQERVGEKIQTVAMHRNEWVEN 223 (319)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 223 (319)
|-+..-.|++.|.+|++.|..++....+..+-+..+.+.|+.+
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~ 100 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGD 100 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3334445666666666666666665555555555555555554
No 60
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=37.80 E-value=3.5 Score=38.09 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=7.6
Q ss_pred HHHHHHHhcc
Q 020938 229 AGFLEMFEEG 238 (319)
Q Consensus 229 ~~f~~~f~~~ 238 (319)
.+|..+|...
T Consensus 177 ~SFF~fF~~~ 186 (264)
T 2zd7_A 177 KTIFGWFRWT 186 (264)
T ss_dssp TSHHHHTTCC
T ss_pred CCcceecCCC
Confidence 5888899753
No 61
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=24.60 E-value=2e+02 Score=22.14 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhCCCCeEEEEeccCcc
Q 020938 35 GHARSLEQAKKSFPNTYLLVGCCNDET 61 (319)
Q Consensus 35 GHi~~LeqAKklf~gd~LIVGV~sDe~ 61 (319)
+|...|.++-...+ .+-+||+..|..
T Consensus 14 ~~g~~l~~~l~~~~-g~~vvg~~d~~~ 39 (141)
T 3nkl_A 14 SAGLQLANMLRQGK-EFHPIAFIDDDR 39 (141)
T ss_dssp HHHHHHHHHHHHSS-SEEEEEEECSCG
T ss_pred HHHHHHHHHHHhCC-CcEEEEEEECCc
Confidence 66666665554433 478899987753
No 62
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=23.58 E-value=2.1e+02 Score=24.30 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=19.4
Q ss_pred CCCeEEEEcCccCcCChHHHHHHHHHh
Q 020938 18 DRPVRVYADGIYDLFHFGHARSLEQAK 44 (319)
Q Consensus 18 ~r~~rVy~~G~FDLfH~GHi~~LeqAK 44 (319)
.-|++||..|.| |.......+.+++
T Consensus 2 ~~M~kIYLAGP~--Fs~~q~~~~~~l~ 26 (162)
T 3ehd_A 2 NAMTKIYFAGPL--FSQADLRYNAYLV 26 (162)
T ss_dssp --CEEEEEESCC--SSHHHHHHHHHHH
T ss_pred CCccEEEEECCC--CCHHHHHHHHHHH
Confidence 358899999999 9999888666544
No 63
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=23.41 E-value=40 Score=33.48 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=13.5
Q ss_pred CCCeEEEEcC-cc--CcCChHHHHH
Q 020938 18 DRPVRVYADG-IY--DLFHFGHARS 39 (319)
Q Consensus 18 ~r~~rVy~~G-~F--DLfH~GHi~~ 39 (319)
.+++.+++++ .+ +++|+||++-
T Consensus 16 ~~~~~~v~~~~py~ng~lHiGH~r~ 40 (560)
T 3h99_A 16 VAKKILVTCASPYANGSIHLGHMLE 40 (560)
T ss_dssp -CCEEEEEECCCBTTSCCBHHHHHH
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHH
Confidence 3344444444 45 7899999863
No 64
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=23.40 E-value=35 Score=33.72 Aligned_cols=10 Identities=40% Similarity=0.488 Sum_probs=8.6
Q ss_pred CcCChHHHHH
Q 020938 30 DLFHFGHARS 39 (319)
Q Consensus 30 DLfH~GHi~~ 39 (319)
+++|+||++-
T Consensus 38 g~lHiGH~r~ 47 (536)
T 4dlp_A 38 GKPHIGHAYE 47 (536)
T ss_dssp SCCCHHHHHH
T ss_pred CCcCcchhHH
Confidence 8999999863
No 65
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=23.37 E-value=45 Score=34.12 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=21.0
Q ss_pred CCCCCeEEEEcCc--cCcCChHHHH------HHHHHhhhC
Q 020938 16 PSDRPVRVYADGI--YDLFHFGHAR------SLEQAKKSF 47 (319)
Q Consensus 16 ~~~r~~rVy~~G~--FDLfH~GHi~------~LeqAKklf 47 (319)
...+.++|++.|. .+++|.||++ .|.+..++.
T Consensus 116 ~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~ 155 (629)
T 2zue_A 116 GKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFL 155 (629)
T ss_dssp TTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHc
Confidence 3444566666664 5899999997 345555555
No 66
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=23.34 E-value=17 Score=34.51 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 020938 229 AGFLEMF 235 (319)
Q Consensus 229 ~~f~~~f 235 (319)
..|+++|
T Consensus 268 ~~F~k~~ 274 (335)
T 4fp9_B 268 QVFKKLL 274 (335)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
No 67
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=22.88 E-value=98 Score=31.10 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=24.4
Q ss_pred CeEEEEcCcc--CcCChHHHH------HHHHHhhhCCCCeEEE-Ee
Q 020938 20 PVRVYADGIY--DLFHFGHAR------SLEQAKKSFPNTYLLV-GC 56 (319)
Q Consensus 20 ~~rVy~~G~F--DLfH~GHi~------~LeqAKklf~gd~LIV-GV 56 (319)
.+..|++|-. |.+|+||++ +|.+..++.+.+.+.| +|
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~ni 87 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNI 87 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeee
Confidence 6789999965 999999964 4555555543343433 44
No 68
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=22.81 E-value=43 Score=34.20 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=20.7
Q ss_pred CCCCeEEEEcC--ccCcCChHHHH------HHHHHhhhC
Q 020938 17 SDRPVRVYADG--IYDLFHFGHAR------SLEQAKKSF 47 (319)
Q Consensus 17 ~~r~~rVy~~G--~FDLfH~GHi~------~LeqAKklf 47 (319)
..+.++|++.| +..++|.||+| .|.+..+..
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~ 179 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKL 179 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHc
Confidence 34445666665 57999999998 345555555
No 69
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=22.21 E-value=69 Score=29.72 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=23.5
Q ss_pred CCeEEEEcCccC---cCChHHHHHHHHHhhhCC-CCeEEEEeccC
Q 020938 19 RPVRVYADGIYD---LFHFGHARSLEQAKKSFP-NTYLLVGCCND 59 (319)
Q Consensus 19 r~~rVy~~G~FD---LfH~GHi~~LeqAKklf~-gd~LIVGV~sD 59 (319)
++.+||++ || .+|+||+-.|...+.+-. |-.+++-|...
T Consensus 31 ~~~~vy~G--~~PTg~lHlG~l~~l~~~~~lq~~g~~~~~~i~D~ 73 (323)
T 2cyb_A 31 EKPRAYVG--YEPSGEIHLGHMMTVQKLMDLQEAGFEIIVLLADI 73 (323)
T ss_dssp SCCEEEEE--ECCCSCCBHHHHHHHHHHHHHHHTTCEEEEEECHH
T ss_pred CCCEEEEC--cCCCCcchHHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 34456652 23 489999987776665421 34577777553
No 70
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.42 E-value=1.8e+02 Score=29.89 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccchhHHHHHHHH
Q 020938 179 SYVKEKRLRVNMKLKKLQEKVKQQQERVGEKIQTVAMHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQ 251 (319)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~ 251 (319)
+-|-+....|++.|++|++++.+++.......+-+..+...|+.+...-. ..-..| .-+-..++.||+
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNty----nE~S~ELRRrIq 120 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTY----NRVSEDLRSRIE 120 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHH----HHTTHHHHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhH----HHHHHHHHHHHH
No 71
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=21.17 E-value=67 Score=30.60 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=24.4
Q ss_pred CCeEEEEcCccCc---CChHHHHHHHHHhhhCC-CCeEEEEeccC
Q 020938 19 RPVRVYADGIYDL---FHFGHARSLEQAKKSFP-NTYLLVGCCND 59 (319)
Q Consensus 19 r~~rVy~~G~FDL---fH~GHi~~LeqAKklf~-gd~LIVGV~sD 59 (319)
++.+||++ ||| +|+||+-.|...+.+-. |-.+++-|...
T Consensus 34 ~~~~iy~G--~~PTg~lHlG~l~~l~~~~~lQ~~G~~~~~~iaD~ 76 (364)
T 2cya_A 34 ARIKGYIG--YEPSGVAHIGWLVWMYKVKDLVEAGVDFSVLEATW 76 (364)
T ss_dssp SCCEEEEE--ECCCSSCBTHHHHHHHHHHHHHHTTCEEEEEECHH
T ss_pred CCCEEEec--cCCCCCccHhHHHHHHHHHHHHHCCCCEEEEEeCc
Confidence 34456653 444 89999988887775421 34567777653
No 72
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=20.18 E-value=2e+02 Score=27.19 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=33.7
Q ss_pred CCCCeEEEEcC--ccCcCChHHHHHHHHHhhhCC-CCeEEEEeccCcc-ccccCC----CCCCCHHHHHHH
Q 020938 17 SDRPVRVYADG--IYDLFHFGHARSLEQAKKSFP-NTYLLVGCCNDET-THKFKG----KTVMTEDERYES 79 (319)
Q Consensus 17 ~~r~~rVy~~G--~FDLfH~GHi~~LeqAKklf~-gd~LIVGV~sDe~-v~~~KG----rPV~s~eER~e~ 79 (319)
..+|.+||++= |=+-+|+||+-.|...+.+-. |...++-|..... +....| |+.++.++-...
T Consensus 43 ~g~~~~vy~G~~PTg~sLHLGhl~~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n 113 (356)
T 2pid_A 43 ASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRAN 113 (356)
T ss_dssp ---CCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHH
T ss_pred cCCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHH
Confidence 44566777631 223499999988887776521 3456666654322 211222 456676655543
No 73
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=20.06 E-value=36 Score=34.04 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=8.2
Q ss_pred CcCChHHHH
Q 020938 30 DLFHFGHAR 38 (319)
Q Consensus 30 DLfH~GHi~ 38 (319)
.++|+||++
T Consensus 39 g~lHiGH~r 47 (564)
T 3kfl_A 39 ASPHIGHVY 47 (564)
T ss_dssp SCCCHHHHH
T ss_pred CCCCcchhH
Confidence 899999986
No 74
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=20.03 E-value=59 Score=31.44 Aligned_cols=18 Identities=28% Similarity=0.189 Sum_probs=12.7
Q ss_pred CcCChHHHH------HHHHHhhhC
Q 020938 30 DLFHFGHAR------SLEQAKKSF 47 (319)
Q Consensus 30 DLfH~GHi~------~LeqAKklf 47 (319)
+.+|+||++ .|.+.+++.
T Consensus 16 g~lHiGH~r~~~~~D~~~R~~r~~ 39 (500)
T 2d5b_A 16 AEPHLGHAYTTVVADFLARWHRLD 39 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchhhHHHHHHHHHHHHHHHcC
Confidence 899999986 345555554
Done!