Query 020939
Match_columns 319
No_of_seqs 184 out of 1127
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 06:21:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14655 mraY phospho-N-acetyl 99.9 1.9E-21 4.1E-26 186.4 14.2 116 187-303 2-125 (304)
2 PRK14654 mraY phospho-N-acetyl 99.9 6.2E-21 1.3E-25 182.5 14.3 112 187-303 3-114 (302)
3 PRK00108 mraY phospho-N-acetyl 99.8 5.9E-20 1.3E-24 178.2 16.1 132 182-314 11-148 (344)
4 TIGR00445 mraY phospho-N-acety 99.8 2.8E-19 6.1E-24 172.0 11.8 119 194-313 2-125 (321)
5 COG0472 Rfe UDP-N-acetylmuramy 99.7 2.6E-16 5.6E-21 151.7 12.6 104 184-292 7-112 (319)
6 PRK15119 undecaprenyl-phosphat 99.6 2E-14 4.3E-19 140.9 14.5 119 183-314 7-127 (365)
7 TIGR02380 ECA_wecA undecapreny 99.6 2.4E-14 5.1E-19 139.5 14.2 106 185-303 3-108 (346)
8 cd06852 GT_MraY Phospho-N-acet 99.4 8E-13 1.7E-17 125.1 10.4 86 218-304 2-88 (280)
9 cd06855 GT_GPT_euk UDP-GlcNAc: 99.3 2E-11 4.4E-16 116.2 10.9 91 198-302 2-102 (283)
10 cd06912 GT_MraY_like This subf 99.3 3.1E-11 6.8E-16 108.8 10.5 84 221-313 5-92 (193)
11 cd06854 GT_WbpL_WbcO_like The 99.2 3.4E-11 7.4E-16 112.2 9.9 73 221-302 9-85 (253)
12 cd06499 GT_MraY-like Glycosylt 99.2 4.5E-11 9.7E-16 107.3 10.2 83 226-313 1-85 (185)
13 cd06851 GT_GPT_like This famil 99.2 1.6E-10 3.5E-15 106.4 10.7 83 222-313 8-100 (223)
14 cd06853 GT_WecA_like This subf 99.1 2.2E-10 4.8E-15 106.3 8.6 73 222-303 3-79 (249)
15 cd06856 GT_GPT_archaea UDP-Glc 99.1 5.8E-10 1.2E-14 106.0 10.1 87 218-313 3-93 (280)
16 PF00953 Glycos_transf_4: Glyc 97.5 0.00024 5.1E-09 62.1 6.6 51 256-314 3-54 (159)
17 PF10555 MraY_sig1: Phospho-N- 97.5 2.3E-05 4.9E-10 43.1 -0.2 13 224-236 1-13 (13)
18 COG4589 Predicted CDP-diglycer 78.0 18 0.0004 35.4 9.5 90 192-291 185-274 (303)
19 PF12270 Cyt_c_ox_IV: Cytochro 72.0 71 0.0015 28.3 12.6 28 183-210 38-65 (137)
20 PRK11492 hyfE hydrogenase 4 me 71.8 53 0.0012 30.7 10.7 57 181-243 56-113 (216)
21 PF03699 UPF0182: Uncharacteri 55.0 1.7E+02 0.0037 32.7 12.2 36 266-302 178-213 (774)
22 PHA00458 single-stranded DNA-b 52.1 13 0.00027 35.6 2.8 37 56-93 168-204 (233)
23 COG4312 Uncharacterized protei 49.0 8.4 0.00018 36.9 1.1 77 2-94 92-168 (247)
24 PRK00068 hypothetical protein; 48.9 3E+02 0.0065 31.6 13.1 22 281-302 204-225 (970)
25 PF05478 Prominin: Prominin; 44.9 1.4E+02 0.003 33.0 9.7 22 224-246 451-472 (806)
26 KOG4112 Signal peptidase subun 41.9 89 0.0019 26.4 5.9 29 181-209 51-79 (101)
27 PF14362 DUF4407: Domain of un 41.3 1.2E+02 0.0025 29.0 7.6 72 228-300 16-97 (301)
28 PRK13700 conjugal transfer pro 40.3 1E+02 0.0023 34.0 7.8 10 127-136 14-23 (732)
29 PF09323 DUF1980: Domain of un 39.3 1.7E+02 0.0036 26.1 7.9 64 176-245 26-89 (182)
30 PRK12287 tqsA pheromone autoin 39.2 1.4E+02 0.0031 29.1 8.0 24 181-204 32-55 (344)
31 PRK12438 hypothetical protein; 38.1 6.4E+02 0.014 29.2 13.6 22 281-302 202-223 (991)
32 PF06830 Root_cap: Root cap; 36.7 23 0.0005 27.1 1.6 28 209-236 15-42 (57)
33 PF08566 Pam17: Mitochondrial 36.6 1.3E+02 0.0029 27.7 6.7 27 176-202 73-100 (173)
34 PF11947 DUF3464: Protein of u 35.1 36 0.00077 30.6 2.8 12 225-236 69-80 (153)
35 PRK13673 hypothetical protein; 33.4 2.8E+02 0.006 24.0 7.8 84 227-317 32-117 (118)
36 PF05988 DUF899: Bacterial pro 32.7 25 0.00054 33.2 1.5 113 2-141 86-198 (211)
37 PF07331 TctB: Tripartite tric 32.2 2.9E+02 0.0063 22.8 11.9 25 182-206 35-59 (141)
38 PF14012 DUF4229: Protein of u 30.9 2.1E+02 0.0045 22.2 6.1 27 180-206 30-56 (69)
39 PF13465 zf-H2C2_2: Zinc-finge 27.5 19 0.00041 22.5 -0.1 12 6-17 1-12 (26)
40 PF01769 MgtE: Divalent cation 26.8 3.8E+02 0.0082 22.4 8.5 28 182-209 82-109 (135)
41 COG2978 AbgT Putative p-aminob 26.7 1E+02 0.0022 32.6 4.9 21 224-246 344-364 (516)
42 PF04341 DUF485: Protein of un 25.8 2.3E+02 0.005 22.7 5.8 34 173-206 43-79 (91)
43 PF06123 CreD: Inner membrane 24.1 8.3E+02 0.018 25.4 12.1 24 125-148 307-330 (430)
44 COG4956 Integral membrane prot 23.8 5.3E+02 0.012 26.3 9.0 109 149-269 10-127 (356)
45 COG0786 GltS Na+/glutamate sym 23.3 3.6E+02 0.0078 28.0 7.9 68 225-303 36-108 (404)
46 PRK11715 inner membrane protei 23.3 8.6E+02 0.019 25.3 12.1 23 125-147 313-335 (436)
47 KOG2788 Glycosyltransferase [C 23.2 35 0.00076 34.8 0.8 38 256-301 103-140 (418)
48 PF02225 PA: PA domain; Inter 22.9 57 0.0012 25.1 1.8 47 81-128 52-98 (101)
49 PF06738 DUF1212: Protein of u 21.5 5.6E+02 0.012 22.5 10.7 45 122-167 81-125 (193)
50 COG5393 Predicted membrane pro 21.4 2E+02 0.0042 25.4 4.8 52 227-279 50-107 (131)
51 COG3402 Uncharacterized conser 21.2 3.6E+02 0.0078 24.7 6.6 54 141-202 16-69 (161)
52 TIGR02230 ATPase_gene1 F0F1-AT 20.7 5.1E+02 0.011 21.7 7.8 69 127-201 22-96 (100)
53 COG0382 UbiA 4-hydroxybenzoate 20.5 7.3E+02 0.016 23.5 11.3 22 271-292 187-208 (289)
No 1
>PRK14655 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=99.86 E-value=1.9e-21 Score=186.38 Aligned_cols=116 Identities=25% Similarity=0.297 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccCCCcCCCCCCCCccCchhHHHHHHHHHHHH----HhcCchhHHHHHHHHH
Q 020939 187 FISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIAT----VGFSSLQVSGASAATL 262 (319)
Q Consensus 187 liAfllS~lltpi~Ipllrklklgq~IRedgP~~H~~K~gTPTMGGLaIvpig~ivall~----~~~~s~~i~~lli~tL 262 (319)
+.+++++++++|.++++++|.|++|.+|+|+|++|.||++||||||++|+ ++++++.+. ........+.++.+++
T Consensus 2 ~~s~~ls~~~~p~~i~~l~~~~~~q~ir~dgP~~~~~k~~tPtmGGi~ii-~~~li~~~~~~~~~~~~~~~~~~~l~~~~ 80 (304)
T PRK14655 2 VVAALLSWFLVGLFIRYSKARGWGQPVRQDGPQTHLAKEGTPTAGGVAFV-LALALVFFPLYAFGHAGGERELLIMLAAL 80 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcccccCcccccCCCCCCCcChHHHH-HHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999 677766532 1112233445667788
Q ss_pred HHHHHHHhhhhhhhhhcC----CCCCChHHHHHHHHHHHHHHHHH
Q 020939 263 AIALIGLIDDVICLVKNH----SSGLSAWSRLILEVAVGTWFSFW 303 (319)
Q Consensus 263 lf~lIGlIDDi~Kl~kk~----n~GLspr~KLllQIlAAll~~~~ 303 (319)
+++++|++||+.|+++++ |+||+|++|+++|+++|.++..+
T Consensus 81 ~~~~iG~~DD~~kl~~~~~~~~~~gL~~~~Kl~~Q~l~a~~~~~~ 125 (304)
T PRK14655 81 AMGVVGGIDDFLKIRSRMRGHGKKELLAREKFPLQFLVALVFAGF 125 (304)
T ss_pred HHHHHHHHhhhhhhhccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999887 89999999999999999876543
No 2
>PRK14654 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=99.85 E-value=6.2e-21 Score=182.48 Aligned_cols=112 Identities=27% Similarity=0.361 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccCCCcCCCCCCCCccCchhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 020939 187 FISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIAL 266 (319)
Q Consensus 187 liAfllS~lltpi~Ipllrklklgq~IRedgP~~H~~K~gTPTMGGLaIvpig~ivall~~~~~s~~i~~lli~tLlf~l 266 (319)
.+++++|++++|.++++++|.|++|.+|+++|+.|++|++||||||++|++ +.++..... .....++++++++++
T Consensus 3 ~~sf~~s~~~~p~~i~~~~k~~~~~~ir~~g~~~H~~k~~tP~mGGi~i~~-~~~~~~~~~----~~~~~~l~~~~~~~~ 77 (302)
T PRK14654 3 AANFLLNLFLYPILIKLFRRRRIGQYIRKEGPDLHGYKEGTPTMGGILFVL-TGFLFGMIS----KTNTMVLLGMFLFFL 77 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCcCCcHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999994 333332221 112334557788999
Q ss_pred HHHhhhhhhhhhcCCCCCChHHHHHHHHHHHHHHHHH
Q 020939 267 IGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFW 303 (319)
Q Consensus 267 IGlIDDi~Kl~kk~n~GLspr~KLllQIlAAll~~~~ 303 (319)
+|++||+.|+++|+|+||+++.|+++|+++|+++.++
T Consensus 78 iG~lDD~~~l~~~~~~gL~~~~Kl~~q~~~a~~~~~~ 114 (302)
T PRK14654 78 IGFLDDFLSVARKDSTGLKTYQKALLQTLAAFIMLLL 114 (302)
T ss_pred HHHHhccHhhhccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999886444
No 3
>PRK00108 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=99.83 E-value=5.9e-20 Score=178.17 Aligned_cols=132 Identities=30% Similarity=0.493 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCcCCCCCCCCccCchhHHHHHHHHHHHHH-hcCchhHHHHHHH
Q 020939 182 LTRPFFISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATV-GFSSLQVSGASAA 260 (319)
Q Consensus 182 L~l~~liAfllS~lltpi~Ipllrklklgq~IRedgP~~H~~K~gTPTMGGLaIvpig~ivall~~-~~~s~~i~~lli~ 260 (319)
+.+.+++++++|++++|.++++++|.+++++++.++|+.|+||++||+|||++|+ ++++++.++. ...+.+.+.++++
T Consensus 11 ~~~~~~~af~is~~~~p~~i~~~~~~~~~~~~~~~~p~~h~h~~~tP~~GGi~i~-~~~~~~~~~~~~~~~~~~~~~l~~ 89 (344)
T PRK00108 11 ALLALLTALLISLILGPRFIRFLRKLKFGQPIREDGPQSHLKKAGTPTMGGILIL-LAIVISTLLWADLSNPYVWLVLLV 89 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccCCCCCCCcccHHHH-HHHHHHHHHHHhccchHHHHHHHH
Confidence 4567788999999999999999999999888888999999889999999999999 6887776432 2223445555666
Q ss_pred HHHHHHHHHhhhhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHH-----hhcceecCCC
Q 020939 261 TLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWL-----DATSIPSPYG 314 (319)
Q Consensus 261 tLlf~lIGlIDDi~Kl~kk~n~GLspr~KLllQIlAAll~~~~l-----~~~~IslPfg 314 (319)
+++++++|++||+.|.++++++|++++.|+++|+++|+++..+. ..+.+.+|+.
T Consensus 90 ~~~~~~vG~~DD~~~~~~~~~~~l~~~~kl~~q~~aa~~~~~~~~~~g~~~~~~~~p~~ 148 (344)
T PRK00108 90 TLGFGLIGFLDDYLKVVKKNNLGLSARQKLLLQILIALIFALLLYLLGSTSTSLTIPFF 148 (344)
T ss_pred HHHHHHHHhHHhhHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCceEEecCc
Confidence 77788999999999999999999999999999999998876653 2456677764
No 4
>TIGR00445 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase. Involved in peptidoglycan biosynthesis, the enzyme catalyzes the first of the lipid cycle reactions. Also known as Muramoyl-Pentapeptide Transferase (murX).
Probab=99.80 E-value=2.8e-19 Score=172.01 Aligned_cols=119 Identities=32% Similarity=0.502 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccCCCcCCCCCCCCccCchhHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHhhh
Q 020939 194 SCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIAT-VGFSSLQVSGASAATLAIALIGLIDD 272 (319)
Q Consensus 194 ~lltpi~Ipllrklklgq~IRedgP~~H~~K~gTPTMGGLaIvpig~ivall~-~~~~s~~i~~lli~tLlf~lIGlIDD 272 (319)
.+++|.++++++|.|++|.+|+|+|++|+||++||+|||++|+ ++++++.++ ....+++.+.+++++++++++|++||
T Consensus 2 ~~~~p~~i~~~~r~~~~~~~~~~~~~~h~~~~~tP~~GGiai~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~DD 80 (321)
T TIGR00445 2 LLLGPKVIPMLKKLKAGQVIRSDGPKSHLKKKGTPTMGGIMIV-FAIIVSTVLWAQLGNPYVLLVLFVLLGYGFIGFVDD 80 (321)
T ss_pred EEeHHHHHHHHHHhCCCCCcccccchhccCCCCCCCcChHHHH-HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999999999999999 677777643 22223444555666777889999999
Q ss_pred hhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHh----hcceecCC
Q 020939 273 VICLVKNHSSGLSAWSRLILEVAVGTWFSFWLD----ATSIPSPY 313 (319)
Q Consensus 273 i~Kl~kk~n~GLspr~KLllQIlAAll~~~~l~----~~~IslPf 313 (319)
+.|.++++|+|++++.|+++|+++|++++.++. .+.+.+|+
T Consensus 81 ~~~~~~~~~~gl~~~~rl~~q~~~a~~~~~~~~~~~~~~~~~~p~ 125 (321)
T TIGR00445 81 YRKIKRKSNKGLTAKQKLFGQIIIALIFCTWLYYYGPDTFIYIPF 125 (321)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEeccc
Confidence 999999999999999999999999988754422 22455665
No 5
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=2.6e-16 Score=151.66 Aligned_cols=104 Identities=29% Similarity=0.392 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCcCCCCCCCCccCchhHHHHHHHHHHHHHhc--CchhHHHHHHHH
Q 020939 184 RPFFISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGF--SSLQVSGASAAT 261 (319)
Q Consensus 184 l~~liAfllS~lltpi~Ipllrklklgq~IRedgP~~H~~K~gTPTMGGLaIvpig~ivall~~~~--~s~~i~~lli~t 261 (319)
..+++++++|++++|.++++++|.+.+| +|+|+|+.| |++||||||++|+ .+++++.++... .+..++.+++++
T Consensus 7 ~~~i~a~~~s~~~~p~~~~~~~~~~~~~-~~~~~~k~H--~~~tP~mGGl~I~-~~~~~~~~l~~~~~~~~~~~~~l~~~ 82 (319)
T COG0472 7 AALIISFVISLILTPILIKFLRKLGLGD-IPEDGPKSH--KKGTPTMGGLAIL-LSILLASLLAANLLTNPYVWLVLLGL 82 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccc-CCCcccccc--CCCCCCcchHHHH-HHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3678899999999999999999999998 788999988 4599999999999 788888754322 344567788889
Q ss_pred HHHHHHHHhhhhhhhhhcCCCCCChHHHHHH
Q 020939 262 LAIALIGLIDDVICLVKNHSSGLSAWSRLIL 292 (319)
Q Consensus 262 Llf~lIGlIDDi~Kl~kk~n~GLspr~KLll 292 (319)
+.++++|++||+.|++++ ++++.++.|.+.
T Consensus 83 ~~~~~iG~lDD~~~l~~~-~r~l~~~~~a~~ 112 (319)
T COG0472 83 LGFGLIGFLDDRLKLSPK-IRGLIQKLKALL 112 (319)
T ss_pred HHHHHHHHHHhHHHhhHH-hhhHHHHHHHHH
Confidence 999999999999965555 445555555444
No 6
>PRK15119 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Provisional
Probab=99.58 E-value=2e-14 Score=140.94 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCcCCCCCCCCccCchhHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 020939 183 TRPFFISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATL 262 (319)
Q Consensus 183 ~l~~liAfllS~lltpi~Ipllrklklgq~IRedgP~~H~~K~gTPTMGGLaIvpig~ivall~~~~~s~~i~~lli~tL 262 (319)
...+++++++|++++|.++++++|.++.|.+++ ++ .|+++||++||++++ ++++++.++.....+....++++..
T Consensus 7 ~~~~~~~~~~s~~l~~~~~~~a~r~gl~D~P~~--Rk--~H~~~~P~~GGiai~-~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (365)
T PRK15119 7 STELISIFLFSTLFLFFARKVAKKIGLVDKPNY--RK--RHQGLIPLVGGISVY-AGICFTFGITDYYIPHASLYLACAG 81 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--Cc--CCCCCCCCcCcHHHH-HHHHHHHHHHHhcchhHHHHHHHHH
Confidence 345667889999999999999999998766432 33 458899999999999 6887776543222223333444555
Q ss_pred HHHHHHHhhhhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHH--hhcceecCCC
Q 020939 263 AIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWL--DATSIPSPYG 314 (319)
Q Consensus 263 lf~lIGlIDDi~Kl~kk~n~GLspr~KLllQIlAAll~~~~l--~~~~IslPfg 314 (319)
+++++|++||++ +++|+.|+++|+++|.++..+. ..+.+..|++
T Consensus 82 ll~~iG~~DD~~--------~l~~~~RL~~Q~~aa~~l~~~~g~~i~~~~~~~~ 127 (365)
T PRK15119 82 VLVFVGALDDRF--------DISVKIRATIQAAVGIVMMVFAGLYLSSLGYIFG 127 (365)
T ss_pred HHHHHHhHhccc--------CCCHHHHHHHHHHHHHHHHHHhCcchhccccccc
Confidence 577899999998 8999999999999997776543 2344444543
No 7
>TIGR02380 ECA_wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA (see ref ) is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA.
Probab=99.58 E-value=2.4e-14 Score=139.51 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCcCCCCCCCCccCchhHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 020939 185 PFFISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAI 264 (319)
Q Consensus 185 ~~liAfllS~lltpi~Ipllrklklgq~IRedgP~~H~~K~gTPTMGGLaIvpig~ivall~~~~~s~~i~~lli~tLlf 264 (319)
.++++++++++++|.++++++|.++.|.+++ ++ .||++||++||++++ .+++++.+......+....++.+..++
T Consensus 3 ~~~~~~~~s~~~~~~~~~~a~r~~lvD~P~~--Rk--~H~~~~P~~GGiai~-~~~~~~~~~~~~~~~~~~~~l~~~~li 77 (346)
T TIGR02380 3 ELIVIFLSSFAFLFLMRKVAKIVGLVDKPNA--RK--RHQGFIPLVGGISIF-LTLCIYLFLHPALIPHYSLYLFCATIL 77 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC--CC--CCCCCcCCcCcHHHH-HHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 4567888999999999999999998766543 33 458899999999999 687777643222223333445565667
Q ss_pred HHHHHhhhhhhhhhcCCCCCChHHHHHHHHHHHHHHHHH
Q 020939 265 ALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFW 303 (319)
Q Consensus 265 ~lIGlIDDi~Kl~kk~n~GLspr~KLllQIlAAll~~~~ 303 (319)
+++|++||+. +++++.|+++|+++|.+++.+
T Consensus 78 ~~iG~~DD~~--------~Ls~~~rl~~q~~aa~~~~~~ 108 (346)
T TIGR02380 78 VVIGIIDDRF--------DISVKIRLAIQAAVSIVMIQF 108 (346)
T ss_pred HHHHHHhhcc--------CCCHHHHHHHHHHHHHHHHHH
Confidence 8999999998 899999999999999877655
No 8
>cd06852 GT_MraY Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.
Probab=99.42 E-value=8e-13 Score=125.06 Aligned_cols=86 Identities=35% Similarity=0.575 Sum_probs=68.6
Q ss_pred CCcCCCCCCCCccCchhHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCChHHHHHHHHHH
Q 020939 218 PARHSRKGRTPTMGGLFFVPIGIAVTIATV-GFSSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAV 296 (319)
Q Consensus 218 P~~H~~K~gTPTMGGLaIvpig~ivall~~-~~~s~~i~~lli~tLlf~lIGlIDDi~Kl~kk~n~GLspr~KLllQIlA 296 (319)
+.+|.||++||++||++++ .+++++.+.. ...+...+.++.+.++++++|++||+.++++++++|++++.|+++|+++
T Consensus 2 ~~~~~h~~~~P~~GGiai~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vG~~DD~~~l~~~~~~~l~~~~rL~~q~~~ 80 (280)
T cd06852 2 PKSHLKKAGTPTMGGILFI-LAILISTLLWADLDSPEVLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLLQFLI 80 (280)
T ss_pred CcccCCCCCCCCccHHHHH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhHHHhhHHHhccCCCCCCHHHHHHHHHHH
Confidence 4567889999999999999 6777776432 2213334445566677889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 020939 297 GTWFSFWL 304 (319)
Q Consensus 297 All~~~~l 304 (319)
|.++..+.
T Consensus 81 a~~~~~~~ 88 (280)
T cd06852 81 AIVFALLL 88 (280)
T ss_pred HHHHHHHH
Confidence 98776653
No 9
>cd06855 GT_GPT_euk UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. A series of six conserved motifs designated A through F, ranging in length from 5 to 13 amino acid residues, has been identified in this family. They have been determined to be important for stable expression, substrate binding, or catalytic activities.
Probab=99.28 E-value=2e-11 Score=116.20 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCCcccccccCCCcCCCCCCCCccCchhHHHHHHHHHHHHHhcC----------chhHHHHHHHHHHHHHH
Q 020939 198 YICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFS----------SLQVSGASAATLAIALI 267 (319)
Q Consensus 198 pi~Ipllrklklgq~IRedgP~~H~~K~gTPTMGGLaIvpig~ivall~~~~~----------s~~i~~lli~tLlf~lI 267 (319)
|.+++++++.++... |.+|.| |.+||++||++++ ++++++..+.... ..+.+.+++++++++++
T Consensus 2 p~~i~~~~~~~l~~~---d~~k~~--~~~vP~~GGlai~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 75 (283)
T cd06855 2 PKFGPLFIKAGLYGI---DLNKNG--EEKIPESAGLVPG-IVFLIVLFLFIPFPFLKDFPHDKLVEYLSALLSICCMTFL 75 (283)
T ss_pred hhHHHHHHHCCCccc---CCCCCC--CCCCCCcCcHHHH-HHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 788999999998644 555555 6899999999999 7888776432111 12344567777889999
Q ss_pred HHhhhhhhhhhcCCCCCChHHHHHHHHHHHHHHHH
Q 020939 268 GLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSF 302 (319)
Q Consensus 268 GlIDDi~Kl~kk~n~GLspr~KLllQIlAAll~~~ 302 (319)
|++||+. +++++.|+++|+++|+++++
T Consensus 76 G~lDD~~--------~l~~~~Kl~~q~~aa~~~~~ 102 (283)
T cd06855 76 GFADDVL--------DLRWRHKLILPTFASLPLLM 102 (283)
T ss_pred HHhhchh--------ccCchHHHHHHHHHHHHHHH
Confidence 9999999 79999999999999986553
No 10
>cd06912 GT_MraY_like This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like family. This family contains both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases, which catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate. This is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. The three bacterial members MraY, WecA, and WbpL/WbcO, utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-
Probab=99.26 E-value=3.1e-11 Score=108.82 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=61.0
Q ss_pred CCCCCCCCccCchhHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCC-hHHHHHHHHHHHH
Q 020939 221 HSRKGRTPTMGGLFFVPIGIAVTIATVG-FSSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLS-AWSRLILEVAVGT 298 (319)
Q Consensus 221 H~~K~gTPTMGGLaIvpig~ivall~~~-~~s~~i~~lli~tLlf~lIGlIDDi~Kl~kk~n~GLs-pr~KLllQIlAAl 298 (319)
+.||++||++||++++ ++++++.+... ....+...+++++++++++|++||+. +++ ++.|+++|+++|+
T Consensus 5 k~H~~~~P~~GGi~i~-~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~iG~~DD~~--------~l~~~~~kl~~q~~~a~ 75 (193)
T cd06912 5 KFHTRPTPRIGGVAIF-LGLLAGLLLLSLLSGSLLLLLLLAALPAFLAGLLEDIT--------KRVSPRIRLLATFLSAL 75 (193)
T ss_pred CCCCCCCCCccHHHHH-HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhh--------hcccHHHHHHHHHHHHH
Confidence 3569999999999999 67776653321 11233444566677889999999999 678 9999999999998
Q ss_pred HHHHHHh--hcceecCC
Q 020939 299 WFSFWLD--ATSIPSPY 313 (319)
Q Consensus 299 l~~~~l~--~~~IslPf 313 (319)
++.++.. ...+..|+
T Consensus 76 ~~~~~~~~~~~~~~~~~ 92 (193)
T cd06912 76 LAVWLLGASITRLDLPG 92 (193)
T ss_pred HHHHHhcCccceeeccc
Confidence 7766543 33445554
No 11
>cd06854 GT_WbpL_WbcO_like The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.
Probab=99.24 E-value=3.4e-11 Score=112.21 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=55.8
Q ss_pred CCCCCCCCccCchhHHHHHHHHHHHHH-hc---CchhHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCChHHHHHHHHHH
Q 020939 221 HSRKGRTPTMGGLFFVPIGIAVTIATV-GF---SSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAV 296 (319)
Q Consensus 221 H~~K~gTPTMGGLaIvpig~ivall~~-~~---~s~~i~~lli~tLlf~lIGlIDDi~Kl~kk~n~GLspr~KLllQIlA 296 (319)
+.||++||+|||++|+ .+++++.++. .. ...+...++.+.++++++|++||+. +++++.|+++|+++
T Consensus 9 k~H~~~~P~~GGi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~DD~~--------~l~~~~kl~~q~~~ 79 (253)
T cd06854 9 SSHTKPTPRGGGIAFV-LAFLLALLLAAAAGPLNDLSYLLLLIGLLLLAAVGFIDDLR--------SLSPKIRLLVQLLA 79 (253)
T ss_pred CCCCCCcCCcChHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHhhcc--------CCCHHHHHHHHHHH
Confidence 4568999999999999 6777665332 11 1223444566777889999999998 89999999999999
Q ss_pred HHHHHH
Q 020939 297 GTWFSF 302 (319)
Q Consensus 297 All~~~ 302 (319)
|+++..
T Consensus 80 a~~~~~ 85 (253)
T cd06854 80 AALALY 85 (253)
T ss_pred HHHHHH
Confidence 877654
No 12
>cd06499 GT_MraY-like Glycosyltransferase 4 (GT4) includes both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases. They catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate, which is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. One member, D-N-acetylhexosamine 1-phosphate transferase (GPT) is a eukaryotic enzyme, which is specific for UDP-GlcNAc as donor substrate and dolichol-phosphate as the membrane bound acceptor. The bacterial members MraY, WecA, and WbpL/WbcO utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of thei
Probab=99.24 E-value=4.5e-11 Score=107.27 Aligned_cols=83 Identities=27% Similarity=0.421 Sum_probs=61.8
Q ss_pred CCCccCchhHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHH
Q 020939 226 RTPTMGGLFFVPIGIAVTIATVG-FSSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWL 304 (319)
Q Consensus 226 gTPTMGGLaIvpig~ivall~~~-~~s~~i~~lli~tLlf~lIGlIDDi~Kl~kk~n~GLspr~KLllQIlAAll~~~~l 304 (319)
+||+|||++++ ++++++.++.. ..+.+.+.++.++++++++|++||+++++| |+++++|+++|+++++++..+.
T Consensus 1 ~tP~~GGi~i~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~~DD~~~l~~----gl~~~~kl~~q~~~a~~~~~~~ 75 (185)
T cd06499 1 PTPTMGGLAIL-LGFLLGVLLYIPHSNTLILLALLSGLVAGIVGFIDDLLGLKV----ELSEREKLLLQILAALFLLLIG 75 (185)
T ss_pred CCCCcccHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHhc----CCCHHHHHHHHHHHHHHHHHHH
Confidence 69999999999 67777664322 233444455667788899999999998865 9999999999999998765543
Q ss_pred -hhcceecCC
Q 020939 305 -DATSIPSPY 313 (319)
Q Consensus 305 -~~~~IslPf 313 (319)
....+..|+
T Consensus 76 ~~~~~~~~~~ 85 (185)
T cd06499 76 GGHTTVTTPL 85 (185)
T ss_pred HHhceeecCc
Confidence 234455554
No 13
>cd06851 GT_GPT_like This family includes eukaryotic UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) and archaeal GPT-like glycosyltransferases. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaeal gene, indicating eukaryotic and archaeal enzymes may use the
Probab=99.17 E-value=1.6e-10 Score=106.44 Aligned_cols=83 Identities=17% Similarity=0.257 Sum_probs=60.0
Q ss_pred CCCCCCCccCchhHHHHHHHHHHHHH-hc-----C---chhHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCChHHHHHH
Q 020939 222 SRKGRTPTMGGLFFVPIGIAVTIATV-GF-----S---SLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLIL 292 (319)
Q Consensus 222 ~~K~gTPTMGGLaIvpig~ivall~~-~~-----~---s~~i~~lli~tLlf~lIGlIDDi~Kl~kk~n~GLspr~KLll 292 (319)
+.|.+||||||++++ ++++++.++. .. . ..+.+.+++++++++++|++||+. +++++.|+++
T Consensus 8 ~~~~~tP~~GGi~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~lDD~~--------~l~~~~Kl~~ 78 (223)
T cd06851 8 KGNVMIPEPGGISIL-IGFVASEITLIFFPFLSFPHFPISEILAALITSVLGFSVGIIDDRL--------TMGGWFKPVA 78 (223)
T ss_pred CCCCCCCCcchHHHH-HHHHHHHHHHHHccccccccchHHHHHHHHHHHHHHHHHHHHHhcc--------cCCHHHHHHH
Confidence 457899999999999 6877776432 11 0 112344556677788999999998 8999999999
Q ss_pred HHHHHHHHHHH-HhhcceecCC
Q 020939 293 EVAVGTWFSFW-LDATSIPSPY 313 (319)
Q Consensus 293 QIlAAll~~~~-l~~~~IslPf 313 (319)
|++++++++.. .....+..|+
T Consensus 79 q~~~a~~~~~~~~~~~~~~~~~ 100 (223)
T cd06851 79 LAFAAAPILLLGAYDSNLDFPL 100 (223)
T ss_pred HHHHHHHHHHHHHhccceeecc
Confidence 99998766543 2344556665
No 14
>cd06853 GT_WecA_like This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.
Probab=99.11 E-value=2.2e-10 Score=106.33 Aligned_cols=73 Identities=26% Similarity=0.413 Sum_probs=56.3
Q ss_pred CCCCCCCccCchhHHHHHHHHHHHHHhc----CchhHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCChHHHHHHHHHHH
Q 020939 222 SRKGRTPTMGGLFFVPIGIAVTIATVGF----SSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVG 297 (319)
Q Consensus 222 ~~K~gTPTMGGLaIvpig~ivall~~~~----~s~~i~~lli~tLlf~lIGlIDDi~Kl~kk~n~GLspr~KLllQIlAA 297 (319)
.||++||++||++++ ++++++.++... ...+...++++.++++++|++||+. +++++.|+++|++++
T Consensus 3 ~H~~~~P~~GGi~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~DD~~--------~l~~~~kl~~q~~~a 73 (249)
T cd06853 3 VHKGPIPRLGGLAIF-LGFLLALLLALLFPFFLLPELLGLLAGATIIVLLGLLDDLF--------DLSPKVKLLGQILAA 73 (249)
T ss_pred CCCCCCCCcCcHHHH-HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHheehHHhcc--------CCCHHHHHHHHHHHH
Confidence 348899999999999 677777643221 1233444566777788999999997 999999999999999
Q ss_pred HHHHHH
Q 020939 298 TWFSFW 303 (319)
Q Consensus 298 ll~~~~ 303 (319)
++++.+
T Consensus 74 ~~~~~~ 79 (249)
T cd06853 74 LIVVFG 79 (249)
T ss_pred HHHHHh
Confidence 877654
No 15
>cd06856 GT_GPT_archaea UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT)-like proteins in archaea. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaea gene, indicating that eukaryotic and archaeal enzymes may use the same substrates and are evolutionarily closer than the bacterial enzyme, which uses a different substrate.
Probab=99.08 E-value=5.8e-10 Score=105.99 Aligned_cols=87 Identities=23% Similarity=0.370 Sum_probs=63.5
Q ss_pred CCcCC-CCCCCCccCchhHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCChHHHHHHHH
Q 020939 218 PARHS-RKGRTPTMGGLFFVPIGIAVTIATVGF--SSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEV 294 (319)
Q Consensus 218 P~~H~-~K~gTPTMGGLaIvpig~ivall~~~~--~s~~i~~lli~tLlf~lIGlIDDi~Kl~kk~n~GLspr~KLllQI 294 (319)
++.|+ +|.+||+|||++++ ++++++.++... ...+...+++++++++++|++||+. +++++.|+++|+
T Consensus 3 ~d~hk~~~~~vP~~GGi~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lG~~DD~~--------~l~~~~Kl~~~~ 73 (280)
T cd06856 3 RDVHKPGKPEVPEMGGIAVL-LGFSLGLLFLSALTHSVEALALLITSLLAGLIGLLDDIL--------GLSQSEKVLLTA 73 (280)
T ss_pred ccccccCCCCCCCcchHHHH-HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhhhccc--------cCCHHHHHHHHH
Confidence 44564 36699999999999 687777643211 1223444567778889999999998 899999999999
Q ss_pred HHHHHHHHHH-hhcceecCC
Q 020939 295 AVGTWFSFWL-DATSIPSPY 313 (319)
Q Consensus 295 lAAll~~~~l-~~~~IslPf 313 (319)
++|+.+..+. ..+.+.+|+
T Consensus 74 ~aa~~l~~~~~~~~~~~~p~ 93 (280)
T cd06856 74 LPAIPLLVLKAGNPLTSLPI 93 (280)
T ss_pred HHHHHHHHHHHhcceeecCc
Confidence 9998876543 345556664
No 16
>PF00953 Glycos_transf_4: Glycosyl transferase family 4; InterPro: IPR000715 This entry represents a family of UDP-GlcNAc/MurNAc: polyisoprenol-P GlcNAc/MurNAc-1-P transferases. Members of the family include eukaryotic N-acetylglucosamine-1-phosphate transferases, which catalyse the conversion of UDP-N-acteyl-D-glucosamine and dolichyl phosphate to UMP and N-acetyl-D-glucosaminyl-diphosphodolichol in the glycosylation pathway; and bacterial phospho-N-acetylmuramoyl-pentapeptide-transferases, which catalyse the first step of the lipid cycle reactions in the biosynthesis of cell wall peptidoglycan.; GO: 0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity, 0016021 integral to membrane
Probab=97.52 E-value=0.00024 Score=62.14 Aligned_cols=51 Identities=39% Similarity=0.530 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHH-hhcceecCCC
Q 020939 256 GASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWL-DATSIPSPYG 314 (319)
Q Consensus 256 ~lli~tLlf~lIGlIDDi~Kl~kk~n~GLspr~KLllQIlAAll~~~~l-~~~~IslPfg 314 (319)
.++.+++.++++|++||+. +++++.|+.+|++++.++..+. ..+.+..|+.
T Consensus 3 ~~l~~~~~~~~iG~~DD~~--------~l~~~~rl~~q~~~a~~~~~~~~~~~~~~~~~~ 54 (159)
T PF00953_consen 3 LLLLALLLIGLIGLLDDLK--------GLSPRLRLLLQLLAALLLVFLGGGLTSLGIPFG 54 (159)
T ss_pred HHHHHHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 3466778899999999997 9999999999999999887654 4556667765
No 17
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=97.47 E-value=2.3e-05 Score=43.10 Aligned_cols=13 Identities=62% Similarity=1.170 Sum_probs=11.2
Q ss_pred CCCCCccCchhHH
Q 020939 224 KGRTPTMGGLFFV 236 (319)
Q Consensus 224 K~gTPTMGGLaIv 236 (319)
|++||||||++|+
T Consensus 1 K~gTPTMGGi~~i 13 (13)
T PF10555_consen 1 KSGTPTMGGIVFI 13 (13)
T ss_pred CCCCccceeEEEC
Confidence 6799999999874
No 18
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=78.02 E-value=18 Score=35.38 Aligned_cols=90 Identities=21% Similarity=0.256 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHcCCcccccccCCCcCCCCCCCCccCchhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhh
Q 020939 192 LVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIATVGFSSLQVSGASAATLAIALIGLID 271 (319)
Q Consensus 192 lS~lltpi~Ipllrklklgq~IRedgP~~H~~K~gTPTMGGLaIvpig~ivall~~~~~s~~i~~lli~tLlf~lIGlID 271 (319)
.+=+..+++.+..-|.|+. |+.-.+|.--=-+||+.-. .+++.++....+...+-.++..+++++.|++-
T Consensus 185 ~nDV~QYvwGk~fGk~Ki~-------P~vSPnKTveGl~GGilt~---~~~~~~l~~lTp~~~lqa~~~~~~I~l~GF~G 254 (303)
T COG4589 185 LNDVAQYVWGKSFGKRKIV-------PKVSPNKTVEGLIGGILTT---MIASAILGLLTPLNTLQALLAGLLIGLSGFCG 254 (303)
T ss_pred HHHHHHHHHhhhcCCcccC-------CCcCCcchHHHHhhhHHHH---HHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhh
Confidence 4556667777777666654 3333345445567887654 22332111111111222355667789999999
Q ss_pred hhhhhhhcCCCCCChHHHHH
Q 020939 272 DVICLVKNHSSGLSAWSRLI 291 (319)
Q Consensus 272 Di~Kl~kk~n~GLspr~KLl 291 (319)
|+.--.-|++.|++-+-|++
T Consensus 255 dlvmSaiKRd~gvKD~G~li 274 (303)
T COG4589 255 DLVMSAIKRDVGVKDSGKLL 274 (303)
T ss_pred HHHHHHHHhhcCCCcccccC
Confidence 99877667778888887763
No 19
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=72.04 E-value=71 Score=28.30 Aligned_cols=28 Identities=18% Similarity=0.155 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 020939 183 TRPFFISAVLVSCAGYICVPLLKSLKIR 210 (319)
Q Consensus 183 ~l~~liAfllS~lltpi~Ipllrklklg 210 (319)
+.++++++.++++++.++.-..||++..
T Consensus 38 t~aL~ls~~l~~mig~yl~~~~rr~~~r 65 (137)
T PF12270_consen 38 TVALVLSGGLALMIGFYLRFTARRIGPR 65 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 5677888899999999999999988654
No 20
>PRK11492 hyfE hydrogenase 4 membrane subunit; Provisional
Probab=71.81 E-value=53 Score=30.73 Aligned_cols=57 Identities=11% Similarity=-0.048 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHcCCcccccccCCCcCCCCCCCCccCchhHHHHHHHHH
Q 020939 181 YLTRPFFISAVLVSCAGYICVP-LLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVT 243 (319)
Q Consensus 181 ~L~l~~liAfllS~lltpi~Ip-llrklklgq~IRedgP~~H~~K~gTPTMGGLaIvpig~iva 243 (319)
.+.+..++++++=.++.|++.. ..+|.+. .||..|... ...++-.|+...+ +++.++
T Consensus 56 ~L~~~a~~~l~~K~iliP~lL~r~~~k~~~---~re~~p~i~--~~~s~ll~~~~~i-~s~~~~ 113 (216)
T PRK11492 56 ELLIWSITAFITKVLLVPLIMTYAARKLGD---NIEEEPVFG--PAMSILLAALIVL-LCAFVV 113 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccccccc--hHHHHHHHHHHHH-HHHHHH
Confidence 4556666677777777777654 4666664 244444322 3344444544433 344433
No 21
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=55.02 E-value=1.7e+02 Score=32.66 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=21.1
Q ss_pred HHHHhhhhhhhhhcCCCCCChHHHHHHHHHHHHHHHH
Q 020939 266 LIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSF 302 (319)
Q Consensus 266 lIGlIDDi~Kl~kk~n~GLspr~KLllQIlAAll~~~ 302 (319)
++.++..-..+ .....++++..|.=+-+++|+++++
T Consensus 178 ~~y~~~~~~~~-~~~~~~~~~~a~~hL~~L~~~~~l~ 213 (774)
T PF03699_consen 178 VVYYLFGGIRL-QGRGPRFSRAARRHLSILLALFFLL 213 (774)
T ss_pred HHHHHhccccc-cCcccCcCHHHHHHHHHHHHHHHHH
Confidence 33444443332 2344578888887777777766654
No 22
>PHA00458 single-stranded DNA-binding protein
Probab=52.06 E-value=13 Score=35.55 Aligned_cols=37 Identities=27% Similarity=0.543 Sum_probs=25.8
Q ss_pred ccceeeceeeeccccCcCCCcccCCCCCCCCceeEeee
Q 020939 56 GYQLQYTAVQVGAFNDDFDIASFDNWSDDEGTVGYMVS 93 (319)
Q Consensus 56 ~~~~~~~~~~~~af~~d~~~~~~~~~~~~~~~~~~~~~ 93 (319)
+++||-.+|||--.=| |+-..-|+|+|+++.-||..+
T Consensus 168 sVkLqL~sv~vieL~e-f~ggg~d~~~d~~~e~gy~a~ 204 (233)
T PHA00458 168 SVKLQLESVMLVELAE-FGGGGEDDWADEDEEDGYVAS 204 (233)
T ss_pred eeEEEeeeEEEEEEEE-ecCCCcccccCccccCCeecc
Confidence 7999999999421111 222556789988777798887
No 23
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.96 E-value=8.4 Score=36.89 Aligned_cols=77 Identities=22% Similarity=0.447 Sum_probs=54.7
Q ss_pred CCcchhhhcccccccccccccccceEEeeecceeccCCCCccccCCCCCcccccccceeeceeeeccccCcCCCcccCCC
Q 020939 2 RSCSSFQRHSQSHLGHFRARRSSSLIVAKTSCRFRSGSLSPELNGSKSNVSRTHGYQLQYTAVQVGAFNDDFDIASFDNW 81 (319)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~d~~~~~~~~~ 81 (319)
.+||.+--|---|++|.+++--+-..|+++- -+||- .-+|+.||++.--+.-.++||-||..+ +
T Consensus 92 ~gCS~laD~~dGa~~HL~~~dv~lv~VsRAP--------l~~l~----~~k~rmGW~f~w~Ss~~s~Fn~Df~vs----f 155 (247)
T COG4312 92 PGCSFLADHWDGAVAHLEHHDVTLVAVSRAP--------LEELV----AYKRRMGWQFPWVSSTDSDFNRDFQVS----F 155 (247)
T ss_pred CchhhHHhhhhhhhhhHhhcCceEEEEecCc--------HHHHH----HHHHhcCCcceeEeccCcccccccccc----c
Confidence 5899999999999999999877766776642 12332 346788999776666677788777543 4
Q ss_pred CCCCCceeEeeeC
Q 020939 82 SDDEGTVGYMVSS 94 (319)
Q Consensus 82 ~~~~~~~~~~~~s 94 (319)
+|++-..|+.+|.
T Consensus 156 ~~~q~~~G~~~yn 168 (247)
T COG4312 156 TEDQQAPGVVVYN 168 (247)
T ss_pred chhhccCceeEee
Confidence 5556666666555
No 24
>PRK00068 hypothetical protein; Validated
Probab=48.89 E-value=3e+02 Score=31.63 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHH
Q 020939 281 SSGLSAWSRLILEVAVGTWFSF 302 (319)
Q Consensus 281 n~GLspr~KLllQIlAAll~~~ 302 (319)
+.+++...|.=+-+++|+++++
T Consensus 204 ~~~~~~~ar~hl~~l~~~~~ll 225 (970)
T PRK00068 204 KGGISRFARKQLAVLAGLLMLL 225 (970)
T ss_pred CcCCCHHHHHHHHHHHHHHHHH
Confidence 3567887777676777766653
No 25
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=44.85 E-value=1.4e+02 Score=32.99 Aligned_cols=22 Identities=23% Similarity=0.606 Sum_probs=17.3
Q ss_pred CCCCCccCchhHHHHHHHHHHHH
Q 020939 224 KGRTPTMGGLFFVPIGIAVTIAT 246 (319)
Q Consensus 224 K~gTPTMGGLaIvpig~ivall~ 246 (319)
+..+...||.+++ +|+.+++++
T Consensus 451 r~c~~~tGg~~Lm-~gv~~~Flf 472 (806)
T PF05478_consen 451 RGCSSNTGGNFLM-AGVGLSFLF 472 (806)
T ss_pred cCCCCCccHHHHH-HHHHHHHHH
Confidence 5678899999998 787777654
No 26
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.94 E-value=89 Score=26.39 Aligned_cols=29 Identities=7% Similarity=-0.163 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 020939 181 YLTRPFFISAVLVSCAGYICVPLLKSLKI 209 (319)
Q Consensus 181 ~L~l~~liAfllS~lltpi~Ipllrklkl 209 (319)
+.+.....++++|.+++.-=.|+.+|-.+
T Consensus 51 ~tvy~vg~~~v~t~li~LPpwP~y~rn~L 79 (101)
T KOG4112|consen 51 VTVYIVGAGFVFTLLITLPPWPWYRRNPL 79 (101)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhhhcCcc
Confidence 45566677888888888666677777444
No 27
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=41.26 E-value=1.2e+02 Score=28.96 Aligned_cols=72 Identities=18% Similarity=0.197 Sum_probs=38.9
Q ss_pred CccCchhHHHHHHHHHHHH----Hh-cCchhHHHHHHHHHHHHHHHHhhhhhhhhhcCCCC-----CChHHHHHHHHHHH
Q 020939 228 PTMGGLFFVPIGIAVTIAT----VG-FSSLQVSGASAATLAIALIGLIDDVICLVKNHSSG-----LSAWSRLILEVAVG 297 (319)
Q Consensus 228 PTMGGLaIvpig~ivall~----~~-~~s~~i~~lli~tLlf~lIGlIDDi~Kl~kk~n~G-----Lspr~KLllQIlAA 297 (319)
-.+|+++++ .+++.++.. .. +..+....+.++.+...+|..+|=++-..-+++.+ .....|+++=+++|
T Consensus 16 ~~~G~~vl~-ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvlia 94 (301)
T PF14362_consen 16 AGIGAAVLF-TALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVLIA 94 (301)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH
Confidence 357777777 566555411 11 22232445566666667888899888665554443 12344444444444
Q ss_pred HHH
Q 020939 298 TWF 300 (319)
Q Consensus 298 ll~ 300 (319)
+++
T Consensus 95 ivI 97 (301)
T PF14362_consen 95 IVI 97 (301)
T ss_pred HHH
Confidence 433
No 28
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=40.27 E-value=1e+02 Score=34.05 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=9.1
Q ss_pred HHHHHHHhhh
Q 020939 127 LTAHRLAMIG 136 (319)
Q Consensus 127 ~~a~~~~~~~ 136 (319)
|++||+-|+.
T Consensus 14 i~~h~~rMf~ 23 (732)
T PRK13700 14 IASMRIRMFS 23 (732)
T ss_pred HHHHHHHHHH
Confidence 9999999993
No 29
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=39.27 E-value=1.7e+02 Score=26.12 Aligned_cols=64 Identities=13% Similarity=0.202 Sum_probs=28.2
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCcCCCCCCCCccCchhHHHHHHHHHHH
Q 020939 176 PLAPFYLTRPFFISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRTPTMGGLFFVPIGIAVTIA 245 (319)
Q Consensus 176 ~~~~~~L~l~~liAfllS~lltpi~Ipllrklklgq~IRedgP~~H~~K~gTPTMGGLaIvpig~ivall 245 (319)
.+.|-+.-+..+.++++-++...-+..+.+..+- +++. ..|.+.+. +...+.+++.+.++++++
T Consensus 26 YI~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~----~~~~-h~h~~~~~-~~~~~y~l~~iPll~g~l 89 (182)
T PF09323_consen 26 YIHPRYIPLLYFAAILLLILAIVQLWRWFRPKRR----KEDC-HDHGHSKS-KKLWSYFLFLIPLLIGFL 89 (182)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cccc-cccccccc-cccHHHHHHHHHHHHHHc
Confidence 4445454444444444444444444444443221 1111 23433333 666666665444555544
No 30
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=39.24 E-value=1.4e+02 Score=29.08 Aligned_cols=24 Identities=8% Similarity=0.260 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 020939 181 YLTRPFFISAVLVSCAGYICVPLL 204 (319)
Q Consensus 181 ~L~l~~liAfllS~lltpi~Ipll 204 (319)
.+..++++|+++++++-|....+-
T Consensus 32 ~il~P~~~A~~ia~ll~P~v~~L~ 55 (344)
T PRK12287 32 DIIVPFILALFIAVVLNPLVQHMV 55 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777666665553
No 31
>PRK12438 hypothetical protein; Provisional
Probab=38.11 E-value=6.4e+02 Score=29.16 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=15.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHH
Q 020939 281 SSGLSAWSRLILEVAVGTWFSF 302 (319)
Q Consensus 281 n~GLspr~KLllQIlAAll~~~ 302 (319)
+.++++..|.=+-+++|+++++
T Consensus 202 ~~~~s~~ar~hL~vl~~~~~ll 223 (991)
T PRK12438 202 RGMLTQAARVQLAVFAGAFVLL 223 (991)
T ss_pred cccCCHHHHHHHHHHHHHHHHH
Confidence 3568888787777777766654
No 32
>PF06830 Root_cap: Root cap; InterPro: IPR009646 The cells at the periphery of the root cap are continuously sloughed off from the root into the mucilage, and are thought to be programmed to die [].This family represents a conserved region approximately 60 residues in length within plant root cap proteins, which may be involved in the process.
Probab=36.70 E-value=23 Score=27.11 Aligned_cols=28 Identities=21% Similarity=0.084 Sum_probs=19.4
Q ss_pred CcccccccCCCcCCCCCCCCccCchhHH
Q 020939 209 IRQIIRKEGPARHSRKGRTPTMGGLFFV 236 (319)
Q Consensus 209 lgq~IRedgP~~H~~K~gTPTMGGLaIv 236 (319)
+||..|++.-..-.-..++|.|||--=+
T Consensus 15 LGQTYr~~yvn~vk~g~~MPvmGG~~~y 42 (57)
T PF06830_consen 15 LGQTYRPDYVNPVKVGVAMPVMGGEDKY 42 (57)
T ss_pred ccccccCCcccccccCCCCccccCCccc
Confidence 5777776654433457789999997655
No 33
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=36.62 E-value=1.3e+02 Score=27.66 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=17.4
Q ss_pred CCCchhhH-HHHHHHHHHHHHHHHHHHH
Q 020939 176 PLAPFYLT-RPFFISAVLVSCAGYICVP 202 (319)
Q Consensus 176 ~~~~~~L~-l~~liAfllS~lltpi~Ip 202 (319)
+++|+..+ +..+.+..+.++++|.+..
T Consensus 73 GlDP~~~~g~~t~a~g~lG~L~GP~~G~ 100 (173)
T PF08566_consen 73 GLDPFMVYGLATLACGALGWLVGPSLGN 100 (173)
T ss_pred CcCHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 45665533 4455567788888887764
No 34
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=35.05 E-value=36 Score=30.61 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=7.8
Q ss_pred CCCCccCchhHH
Q 020939 225 GRTPTMGGLFFV 236 (319)
Q Consensus 225 ~gTPTMGGLaIv 236 (319)
.++|+..|++.+
T Consensus 69 ~GiP~~lG~~~f 80 (153)
T PF11947_consen 69 VGIPTALGVAVF 80 (153)
T ss_pred hchHHHHHHHHH
Confidence 356777776665
No 35
>PRK13673 hypothetical protein; Provisional
Probab=33.38 E-value=2.8e+02 Score=24.03 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=45.1
Q ss_pred CCccCchhHHHHHHHHHHH-HHh-cCchhHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHH
Q 020939 227 TPTMGGLFFVPIGIAVTIA-TVG-FSSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFSFWL 304 (319)
Q Consensus 227 TPTMGGLaIvpig~ivall-~~~-~~s~~i~~lli~tLlf~lIGlIDDi~Kl~kk~n~GLspr~KLllQIlAAll~~~~l 304 (319)
.-.|.==.++.+.++.+.. +.. +.+...+..+=..+.+.+||++.=..- ++|++ ++...+.+|.++++++..++
T Consensus 32 i~hMilRLfyil~iiTG~~l~~~~~~~~~~l~~~K~l~gi~vIg~mEm~l~-r~kk~---k~~~~~~~~~ii~lvlti~l 107 (118)
T PRK13673 32 ILHMILRLFYILIIITGFWLLIRSFGSNHMLYILKMLLGIIVIGLMEMSLA-KRKKG---KPTGGFWWIFIIVLVLTILL 107 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHH-HHHcC---CCcccHHHHHHHHHHHHHHH
Confidence 3445544566444444432 111 122222223334555678888887763 33332 33445788888887776665
Q ss_pred hhcceecCCCCCC
Q 020939 305 DATSIPSPYGMYS 317 (319)
Q Consensus 305 ~~~~IslPfg~~~ 317 (319)
. +.+|+|.+.
T Consensus 108 G---~~Lp~G~~~ 117 (118)
T PRK13673 108 G---LILPLGFGV 117 (118)
T ss_pred H---HHhccCCCC
Confidence 3 467877653
No 36
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=32.66 E-value=25 Score=33.20 Aligned_cols=113 Identities=19% Similarity=0.315 Sum_probs=70.8
Q ss_pred CCcchhhhcccccccccccccccceEEeeecceeccCCCCccccCCCCCcccccccceeeceeeeccccCcCCCcccCCC
Q 020939 2 RSCSSFQRHSQSHLGHFRARRSSSLIVAKTSCRFRSGSLSPELNGSKSNVSRTHGYQLQYTAVQVGAFNDDFDIASFDNW 81 (319)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~d~~~~~~~~~ 81 (319)
.+||.+--|-+-++.|..+|.-+-.+|++.. -+++ ...++++||++.--+..-+.||.||+...
T Consensus 86 ~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP--------~~~i----~afk~rmGW~~pw~Ss~gs~Fn~D~~~~~---- 149 (211)
T PF05988_consen 86 PGCSFWADHIDGALRHLHARDTTFAVVSRAP--------LEKI----EAFKRRMGWTFPWYSSYGSDFNYDFGVSF---- 149 (211)
T ss_pred CchhhhHhhhhhhHHHHHhCCceEEEEeCCC--------HHHH----HHHHHhcCCCceEEEcCCCccccccccee----
Confidence 5899999999999999999988777776532 1233 24567889997765555678999987532
Q ss_pred CCCCCceeEeeeCCCCCCCCCceEeeccccCCCCcccccCCcchhHHHHHHHhhhhhhhh
Q 020939 82 SDDEGTVGYMVSSSEGEESDGEIVLNSISDTDLPSVFVSNNDALTLTAHRLAMIGRARRR 141 (319)
Q Consensus 82 ~~~~~~~~~~~~ss~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~ 141 (319)
+++++-.|+-+.--|| |+|..+=-|+ ....+.+.-+=+=|-+-++||.-
T Consensus 150 ~~~~~~~g~svF~Rdg----~~VfhTyst~-------~RG~e~l~~~~~lLDlTP~GR~E 198 (211)
T PF05988_consen 150 DEGGEMPGLSVFLRDG----GRVFHTYSTY-------GRGGERLMPTWNLLDLTPLGRQE 198 (211)
T ss_pred ccCCCceeEEEEEEcC----CEEEEEeecC-------CCCchhhhhHHHHHhcCCCCCCC
Confidence 2334444544444444 6666654442 23344444455555555555543
No 37
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=32.19 E-value=2.9e+02 Score=22.79 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 020939 182 LTRPFFISAVLVSCAGYICVPLLKS 206 (319)
Q Consensus 182 L~l~~liAfllS~lltpi~Ipllrk 206 (319)
-++|..++.++..+....+..-.++
T Consensus 35 ~~fP~~l~~~l~~~~~~l~~~~~~~ 59 (141)
T PF07331_consen 35 GFFPRLLGILLLILSLLLLVRSFRG 59 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577777666666666566655554
No 38
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=30.92 E-value=2.1e+02 Score=22.19 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 020939 180 FYLTRPFFISAVLVSCAGYICVPLLKS 206 (319)
Q Consensus 180 ~~L~l~~liAfllS~lltpi~Ipllrk 206 (319)
..++...++|+++++.+.+++-+..|.
T Consensus 30 ~p~~~~~l~A~vis~~lS~~ll~~~R~ 56 (69)
T PF14012_consen 30 VPLLVAALLALVISMPLSYVLLRRLRD 56 (69)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888877776654
No 39
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=27.54 E-value=19 Score=22.50 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=10.0
Q ss_pred hhhhcccccccc
Q 020939 6 SFQRHSQSHLGH 17 (319)
Q Consensus 6 ~~~~~~~~~~~~ 17 (319)
+|++|++.|.|-
T Consensus 1 ~l~~H~~~H~~~ 12 (26)
T PF13465_consen 1 NLRRHMRTHTGE 12 (26)
T ss_dssp HHHHHHHHHSSS
T ss_pred CHHHHhhhcCCC
Confidence 578999999874
No 40
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=26.76 E-value=3.8e+02 Score=22.38 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 020939 182 LTRPFFISAVLVSCAGYICVPLLKSLKI 209 (319)
Q Consensus 182 L~l~~liAfllS~lltpi~Ipllrklkl 209 (319)
+....+++.+++.+++..+.-+++|+|+
T Consensus 82 v~~~~~~~~~~~~~~~~~l~~~~~k~g~ 109 (135)
T PF01769_consen 82 VALSIILSIILALLLGYLLPIILWKIGL 109 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444555566666677777777888776
No 41
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=26.73 E-value=1e+02 Score=32.64 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=13.6
Q ss_pred CCCCCccCchhHHHHHHHHHHHH
Q 020939 224 KGRTPTMGGLFFVPIGIAVTIAT 246 (319)
Q Consensus 224 K~gTPTMGGLaIvpig~ivall~ 246 (319)
-+.+-+|||-..+ +|+.+-++
T Consensus 344 ~~~m~sMg~yiV~--~FfaaQFv 364 (516)
T COG2978 344 AESMSSMGGYIVI--AFFAAQFV 364 (516)
T ss_pred HHHHHHhhhHHHH--HHHHHHHH
Confidence 4468889986654 56666543
No 42
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=25.77 E-value=2.3e+02 Score=22.70 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=18.9
Q ss_pred ccCCCCchhhHHHHHHH---HHHHHHHHHHHHHHHHH
Q 020939 173 VRLPLAPFYLTRPFFIS---AVLVSCAGYICVPLLKS 206 (319)
Q Consensus 173 ~r~~~~~~~L~l~~liA---fllS~lltpi~Ipllrk 206 (319)
...|..+..+++.++++ ++++++++.+....+.+
T Consensus 43 m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~Yv~~An~ 79 (91)
T PF04341_consen 43 MATPVFPGSLTLGIVLGLGQIVFAWVLTWLYVRRANR 79 (91)
T ss_pred HcCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34455522444444333 45677777777776664
No 43
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=24.07 E-value=8.3e+02 Score=25.40 Aligned_cols=24 Identities=33% Similarity=0.198 Sum_probs=13.2
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhh
Q 020939 125 LTLTAHRLAMIGRARRRHRIKLGL 148 (319)
Q Consensus 125 ~~~~a~~~~~~~~~~~~~~~~~G~ 148 (319)
||.+|==|--+-++.|=|-+|++.
T Consensus 307 LTF~~fflfE~~~~~~iHpiQY~L 330 (430)
T PF06123_consen 307 LTFLAFFLFELLSKLRIHPIQYLL 330 (430)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHH
Confidence 455555555555666666665443
No 44
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=23.78 E-value=5.3e+02 Score=26.25 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhccceeccCCCCchhh-HHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCcCCCCCCC
Q 020939 149 FINLGLITFLTVLLLFVDWCAWKIVRLPLAPFYL-TRPFFISAVLVSCAGYICVPLLKSLKIRQIIRKEGPARHSRKGRT 227 (319)
Q Consensus 149 ~~~~~L~~~l~~~~l~~d~~~~~i~r~~~~~~~L-~l~~liAfllS~lltpi~Ipllrklklgq~IRedgP~~H~~K~gT 227 (319)
+..+|+.++....--...+..|.=......+..- .+..++.+++++.++-.+..+++++.-.-. |.+.
T Consensus 10 ~~i~g~~lG~~~~p~ll~~~~~~~~~~~~n~~v~~ligai~~~li~~~~~~~~~~~~~~le~~i~-----------k~~~ 78 (356)
T COG4956 10 FIIIGAVLGFAVIPELLADLGIQDTAFLNNEYVDALIGAIIFFLISFWFGKYVLNWLKRLEEQIR-----------KLPV 78 (356)
T ss_pred HHHHHhhhhHhhHHHHHhhcCcccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hcCH
Q ss_pred Ccc--CchhHHHHHHHHHHHHHh------cCchhHHHHHHHHHHHHHHHH
Q 020939 228 PTM--GGLFFVPIGIAVTIATVG------FSSLQVSGASAATLAIALIGL 269 (319)
Q Consensus 228 PTM--GGLaIvpig~ivall~~~------~~s~~i~~lli~tLlf~lIGl 269 (319)
+++ |.+..+ +|.+++.+... ..-.......+++++++..|+
T Consensus 79 ~~ilf~tiGLi-iGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~ 127 (356)
T COG4956 79 TTILFGTIGLI-IGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGF 127 (356)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhh
No 45
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=23.35 E-value=3.6e+02 Score=28.00 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=39.2
Q ss_pred CCCCccCchhHHHHHHHHHHHHH----h-cCchhHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCChHHHHHHHHHHHHH
Q 020939 225 GRTPTMGGLFFVPIGIAVTIATV----G-FSSLQVSGASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTW 299 (319)
Q Consensus 225 ~gTPTMGGLaIvpig~ivall~~----~-~~s~~i~~lli~tLlf~lIGlIDDi~Kl~kk~n~GLspr~KLllQIlAAll 299 (319)
-|-|-.||+.+.. +...+.. . ..+..+.-++ ..+.|..+|+=-++.+++|- ..|++++..++..
T Consensus 36 IPepVvgG~i~ai---l~~~~~~~~~~~~~fd~~l~~~f-mliFFttiglsa~~~~lkkg-------Gk~l~if~~~a~~ 104 (404)
T COG0786 36 IPEPVVGGLIFAI---LLLLLHGFGGVSLNFDTSLQDVF-MLIFFATIGLSASFKLLKKG-------GKKLAIFLATAAG 104 (404)
T ss_pred CCcchHHHHHHHH---HHHHHHhcceEEEeCCcccccHH-HHHHHHHhccccchhHHHhc-------ChhHHHHHHHHHH
Confidence 3678889987652 2222211 0 1111111122 33447788999998876533 4678888888877
Q ss_pred HHHH
Q 020939 300 FSFW 303 (319)
Q Consensus 300 ~~~~ 303 (319)
+.++
T Consensus 105 l~~~ 108 (404)
T COG0786 105 LAVL 108 (404)
T ss_pred HHHH
Confidence 7654
No 46
>PRK11715 inner membrane protein; Provisional
Probab=23.27 E-value=8.6e+02 Score=25.34 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=12.2
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhh
Q 020939 125 LTLTAHRLAMIGRARRRHRIKLG 147 (319)
Q Consensus 125 ~~~~a~~~~~~~~~~~~~~~~~G 147 (319)
||.+|==|--+-++.|=|-+|+.
T Consensus 313 LTF~~fFlfE~~~~~~iHpiQYl 335 (436)
T PRK11715 313 LTFAAFFLFELLKKLRIHPVQYL 335 (436)
T ss_pred HHHHHHHHHHHhcCceecHHHHH
Confidence 44555445555555555666543
No 47
>KOG2788 consensus Glycosyltransferase [Carbohydrate transport and metabolism]
Probab=23.22 E-value=35 Score=34.78 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCCCChHHHHHHHHHHHHHHH
Q 020939 256 GASAATLAIALIGLIDDVICLVKNHSSGLSAWSRLILEVAVGTWFS 301 (319)
Q Consensus 256 ~lli~tLlf~lIGlIDDi~Kl~kk~n~GLspr~KLllQIlAAll~~ 301 (319)
..++..-.+.++|+.||.+ +++.|.|+++-.+|++.+.
T Consensus 103 sallsi~~~ilLGfaDD~l--------dlrWRhKl~lPt~AtlPLL 140 (418)
T KOG2788|consen 103 SALLSICSMILLGFADDVL--------DLRWRHKLLLPTIATLPLL 140 (418)
T ss_pred HHHHHHhHHHHhcccchhc--------cchhhhheeccchhhCceE
Confidence 3445556677899999999 8999999999999887653
No 48
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=22.87 E-value=57 Score=25.09 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=32.5
Q ss_pred CCCCCCceeEeeeCCCCCCCCCceEeeccccCCCCcccccCCcchhHH
Q 020939 81 WSDDEGTVGYMVSSSEGEESDGEIVLNSISDTDLPSVFVSNNDALTLT 128 (319)
Q Consensus 81 ~~~~~~~~~~~~~ss~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~ 128 (319)
++-+-++.|+.+++ +.+..........-.+..+|++..+.++.-++.
T Consensus 52 ~a~~~GA~gvIi~~-~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 52 NAQKAGAKGVIIYN-PPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp HHHHTTESEEEEE--TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred HHHHcCCEEEEEEe-CCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 44566788888888 555555556666677889999999888776554
No 49
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.51 E-value=5.6e+02 Score=22.46 Aligned_cols=45 Identities=27% Similarity=0.283 Sum_probs=25.9
Q ss_pred CcchhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 020939 122 NDALTLTAHRLAMIGRARRRHRIKLGLFINLGLITFLTVLLLFVDW 167 (319)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~~~~~~~~G~~~~~~L~~~l~~~~l~~d~ 167 (319)
+-.+.-|-.||..|.+.++....+. ..+..++...-.++++.-+|
T Consensus 81 ~~~~~ea~~~L~~I~~~~~~y~~~~-~~l~~~l~~~~fa~lfgg~~ 125 (193)
T PF06738_consen 81 QLSLEEAIERLDEIDREPPRYPPWL-VILAAGLASAAFALLFGGSW 125 (193)
T ss_pred CCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHHHHHHHHCCCH
Confidence 3344458899999999884444431 23334444444455566665
No 50
>COG5393 Predicted membrane protein [Function unknown]
Probab=21.38 E-value=2e+02 Score=25.37 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=25.7
Q ss_pred CCccCchhHHHHHHHHHH-----HHHhcCchhHH-HHHHHHHHHHHHHHhhhhhhhhhc
Q 020939 227 TPTMGGLFFVPIGIAVTI-----ATVGFSSLQVS-GASAATLAIALIGLIDDVICLVKN 279 (319)
Q Consensus 227 TPTMGGLaIvpig~ival-----l~~~~~s~~i~-~lli~tLlf~lIGlIDDi~Kl~kk 279 (319)
.--|+|+.+.++++.+.. +| .++..+-+ ....++.++.++|.+-=+-++++.
T Consensus 50 lllm~gLtl~fa~~~lmsL~vLvi~-~f~~tyRl~a~~a~~~vl~vl~~i~ciW~lrks 107 (131)
T COG5393 50 LLLMAGLTLLFAAFGLMSLMVLVIW-AFDPTYRLNAMIATTAVLLVLALIGCIWTLRKS 107 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778777654443321 12 12333333 444445555556665555555544
No 51
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=21.16 E-value=3.6e+02 Score=24.66 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=31.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhccceeccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 020939 141 RHRIKLGLFINLGLITFLTVLLLFVDWCAWKIVRLPLAPFYLTRPFFISAVLVSCAGYICVP 202 (319)
Q Consensus 141 ~~~~~~G~~~~~~L~~~l~~~~l~~d~~~~~i~r~~~~~~~L~l~~liAfllS~lltpi~Ip 202 (319)
-.|++.++-.+++|+..+.+..+..+--. .|.+-..++..-+++..+.+.+++|
T Consensus 16 vw~~~~~i~~~l~Ll~av~~~~~~~~~~~--------~~~w~~~a~~av~l~~~vv~l~iiP 69 (161)
T COG3402 16 VWRVQEWIPIALVLLIAVAAGVLLYFVGL--------DPNWSSVAAVAVILLAAVVTLFIIP 69 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheecc--------CCccHHHHHHHHHHHHHHHHhhhhh
Confidence 34455677777777777777776666321 2233444555455555566666666
No 52
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.65 E-value=5.1e+02 Score=21.72 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHHHHhhhhhhhhhhhh-hhhhHHHHHHHHHHHHH-----HHhhhccceeccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 020939 127 LTAHRLAMIGRARRRHRIK-LGLFINLGLITFLTVLL-----LFVDWCAWKIVRLPLAPFYLTRPFFISAVLVSCAGYIC 200 (319)
Q Consensus 127 ~~a~~~~~~~~~~~~~~~~-~G~~~~~~L~~~l~~~~-----l~~d~~~~~i~r~~~~~~~L~l~~liAfllS~lltpi~ 200 (319)
-.|.|..+-.|..+++-++ -|++-.++...++.++. .+.|. +.+-.+.+.+.-++++.++++.-.+.+
T Consensus 22 ~~~~R~~~a~r~~~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~------~~~t~~~~tl~~lllGv~~G~~n~w~w 95 (100)
T TIGR02230 22 DKELRKLRARKNATRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDR------HYPSPFSWTLTMLIVGVVIGCLNAWHW 95 (100)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333333333 44444444444333322 34564 334444333333344555555555444
Q ss_pred H
Q 020939 201 V 201 (319)
Q Consensus 201 I 201 (319)
+
T Consensus 96 i 96 (100)
T TIGR02230 96 V 96 (100)
T ss_pred H
Confidence 3
No 53
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=20.50 E-value=7.3e+02 Score=23.46 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=11.0
Q ss_pred hhhhhhhhcCCCCCChHHHHHH
Q 020939 271 DDVICLVKNHSSGLSAWSRLIL 292 (319)
Q Consensus 271 DDi~Kl~kk~n~GLspr~KLll 292 (319)
-|+....-++..|++...+.++
T Consensus 187 ~~~~D~e~D~~~G~~s~~~~~G 208 (289)
T COG0382 187 YAIQDIEGDRKAGLKSLPVLFG 208 (289)
T ss_pred HhccCccchHhcCCcchHHHhC
Confidence 3333333344457777555544
Done!