Query 020939
Match_columns 319
No_of_seqs 184 out of 1127
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1znf_A 31ST zinc finger from X 20.6 29 0.00098 18.5 0.6 12 5-16 15-26 (27)
2 2ab3_A ZNF29; zinc finger prot 19.3 29 0.001 18.6 0.4 13 4-16 17-29 (29)
3 1sp2_A SP1F2; zinc finger, tra 19.2 27 0.00093 19.5 0.3 12 5-16 18-29 (31)
4 1rik_A E6APC1 peptide; E6-bind 18.8 30 0.001 18.7 0.4 12 5-16 16-27 (29)
5 2kvf_A Zinc finger and BTB dom 18.0 30 0.001 18.6 0.3 12 5-16 17-28 (28)
6 2m0d_A Zinc finger and BTB dom 17.1 30 0.001 18.6 0.1 12 5-16 17-28 (30)
7 1zfd_A SWI5; DNA binding motif 16.7 37 0.0013 19.0 0.4 13 4-16 18-30 (32)
8 2lvr_A Zinc finger and BTB dom 21.0 31 0.001 18.7 0.0 12 5-16 17-28 (30)
9 2lvt_A Zinc finger and BTB dom 19.4 35 0.0012 18.5 0.0 12 5-16 16-27 (29)
10 3t5v_C 26S proteasome complex 14.7 68 0.0023 25.5 1.7 38 67-104 27-69 (89)
No 1
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=20.63 E-value=29 Score=18.45 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=9.6
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+++++|.+.|-|
T Consensus 15 ~~l~~H~~~h~~ 26 (27)
T 1znf_A 15 SALSRHQRVHKN 26 (27)
T ss_dssp HHHHHHGGGTCC
T ss_pred HHHHHHHHHcCC
Confidence 578899998865
No 2
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=19.29 E-value=29 Score=18.60 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=9.7
Q ss_pred cchhhhccccccc
Q 020939 4 CSSFQRHSQSHLG 16 (319)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (319)
-+++++|.+.|-|
T Consensus 17 ~~~l~~H~~~H~~ 29 (29)
T 2ab3_A 17 RRKLNRHKKIHTG 29 (29)
T ss_dssp HHHHHHHHGGGTC
T ss_pred HHHHHHHHHHhCC
Confidence 3578899988854
No 3
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=19.16 E-value=27 Score=19.49 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=9.9
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+++++|.+.|-|
T Consensus 18 ~~L~~H~~~H~~ 29 (31)
T 1sp2_A 18 DELQRHKRTHTG 29 (31)
T ss_dssp HHHHHHHTTTSC
T ss_pred hHHHHHHHHhcC
Confidence 578999999876
No 4
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=18.78 E-value=30 Score=18.65 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=9.7
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+.+++|.+.|.|
T Consensus 16 ~~l~~H~~~H~~ 27 (29)
T 1rik_A 16 DHLTLHILLHEN 27 (29)
T ss_dssp HHHHHHHTGGGS
T ss_pred HHHHHHHHHhcC
Confidence 578899998865
No 5
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=18.04 E-value=30 Score=18.63 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=9.2
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+++++|.+.|-|
T Consensus 17 ~~l~~H~~~h~~ 28 (28)
T 2kvf_A 17 HQMETHYRVHTG 28 (28)
T ss_dssp HHHHHHHTTSCC
T ss_pred HHHHHHHHhcCC
Confidence 568889888854
No 6
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=17.12 E-value=30 Score=18.57 Aligned_cols=12 Identities=33% Similarity=0.337 Sum_probs=9.5
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+++++|.+.|.|
T Consensus 17 ~~l~~H~~~h~~ 28 (30)
T 2m0d_A 17 TSKMRHLETHDT 28 (30)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhcc
Confidence 578899988865
No 7
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=16.69 E-value=37 Score=18.99 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=10.0
Q ss_pred cchhhhccccccc
Q 020939 4 CSSFQRHSQSHLG 16 (319)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (319)
-+++++|.++|-|
T Consensus 18 ~~~L~~H~~~H~~ 30 (32)
T 1zfd_A 18 NHDLIRHKKSHQE 30 (32)
T ss_dssp SHHHHHHHGGGTC
T ss_pred HHHHHHHHHHccC
Confidence 3578899998865
No 8
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=20.96 E-value=31 Score=18.70 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=9.0
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+++++|.+.|.|
T Consensus 17 ~~l~~H~~~h~~ 28 (30)
T 2lvr_A 17 GALQRHVRIHTG 28 (30)
Confidence 467888888865
No 9
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=19.38 E-value=35 Score=18.52 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=9.2
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+++++|.+.|.|
T Consensus 16 ~~l~~H~~~H~~ 27 (29)
T 2lvt_A 16 SSLIAHVRQHTG 27 (29)
Confidence 567888888865
No 10
>3t5v_C 26S proteasome complex subunit SEM1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=14.73 E-value=68 Score=25.45 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=16.3
Q ss_pred ccccC-c-CCCcccCCCCCCCCceeE---eeeCCCCCCCCCce
Q 020939 67 GAFND-D-FDIASFDNWSDDEGTVGY---MVSSSEGEESDGEI 104 (319)
Q Consensus 67 ~af~~-d-~~~~~~~~~~~~~~~~~~---~~~ss~~~~~d~~~ 104 (319)
.++.| | |..|.-++|.+.+.-... ..--=|..|.|+|+
T Consensus 27 ~~LEEDDEFEeFp~edW~~~e~~~~~~~~~~~lWEddWDDDdv 69 (89)
T 3t5v_C 27 KSLEEDDEFEDFPIDTWANGETIKSNAVTQTNIWEENWDDVEV 69 (89)
T ss_dssp CCCCSTTSCCCCCCC-----------CCCCCCCBCTTTTTCCC
T ss_pred cccccccccccCCcccCCCcccccccCcccccccccccccccc
Confidence 34444 4 999988999987754210 12223566777764
Done!