Query 020939
Match_columns 319
No_of_seqs 184 out of 1127
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 10:24:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020939.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020939hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2adra1 g.37.1.1 (A:102-130) A 17.4 14 0.001 21.7 0.1 13 5-17 16-28 (29)
2 d1sp1a_ g.37.1.1 (A:) Transcri 16.1 16 0.0012 21.4 0.3 12 5-16 16-27 (29)
3 d2glia3 g.37.1.1 (A:168-197) F 15.5 15 0.0011 21.8 -0.0 12 5-16 18-29 (30)
4 d1p7aa_ g.37.1.1 (A:) Kruppel- 13.1 24 0.0018 21.4 0.4 12 5-16 25-36 (37)
5 d1sp2a_ g.37.1.1 (A:) Transcri 12.8 23 0.0017 21.0 0.3 12 5-16 18-29 (31)
6 d1a1ia2 g.37.1.1 (A:132-159) Z 12.6 17 0.0012 21.3 -0.4 12 5-16 17-28 (28)
7 d1a1ia1 g.37.1.1 (A:103-131) Z 12.5 18 0.0013 21.4 -0.3 12 5-16 18-29 (29)
8 d2yvxa3 f.57.1.1 (A:276-448) M 12.2 3.1E+02 0.023 21.4 8.4 26 184-209 117-142 (173)
9 d1l3wa4 b.1.6.1 (A:327-433) C- 12.1 2.1E+02 0.016 19.4 6.1 13 61-73 23-35 (107)
10 d2dlka2 g.37.1.1 (A:38-73) Zin 11.7 19 0.0014 22.1 -0.5 12 5-16 17-28 (36)
No 1
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=17.41 E-value=14 Score=21.72 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=10.6
Q ss_pred chhhhcccccccc
Q 020939 5 SSFQRHSQSHLGH 17 (319)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (319)
+.+++|+++|-|.
T Consensus 16 ~~L~~H~r~HTgE 28 (29)
T d2adra1 16 EHLKRHYRSHTNE 28 (29)
T ss_dssp HHHHHHHHTTTSS
T ss_pred hHcccccCcccCC
Confidence 5689999999873
No 2
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.08 E-value=16 Score=21.42 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=10.3
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
|.+++|+++|-|
T Consensus 16 s~L~~H~r~Htg 27 (29)
T d1sp1a_ 16 DHLSKHIKTHQN 27 (29)
T ss_dssp HHHHHHHHGGGC
T ss_pred HHhhhhcCccCC
Confidence 578999999977
No 3
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.50 E-value=15 Score=21.83 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=10.2
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+.+++|.+.|-|
T Consensus 18 ~~L~~H~r~HtG 29 (30)
T d2glia3 18 ENLKTHLRSHTG 29 (30)
T ss_dssp HHHHHHHHHTTT
T ss_pred hHhhhhcCcCcC
Confidence 568999999977
No 4
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.08 E-value=24 Score=21.45 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=10.3
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+++++|.+.|++
T Consensus 25 ~~L~~H~r~H~~ 36 (37)
T d1p7aa_ 25 DHLALHRKRHML 36 (37)
T ss_dssp HHHHHHHGGGTC
T ss_pred HHHHHHHhcCcC
Confidence 578999999985
No 5
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.83 E-value=23 Score=20.99 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=10.2
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+.+++|++.|-|
T Consensus 18 ~~L~~H~r~Htg 29 (31)
T d1sp2a_ 18 DELQRHKRTHTG 29 (31)
T ss_dssp HHHHHHHTTTSC
T ss_pred hHhhhhcCcccc
Confidence 568999999977
No 6
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.56 E-value=17 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=9.9
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+.+++|++.|-|
T Consensus 17 ~~L~~H~r~HTG 28 (28)
T d1a1ia2 17 DHLTTHIRTHTG 28 (28)
T ss_dssp HHHHHHHHHHHC
T ss_pred ccccccCCCccC
Confidence 578899999876
No 7
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.48 E-value=18 Score=21.37 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=9.8
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+.+++|.+.|-|
T Consensus 18 ~~L~~H~r~HtG 29 (29)
T d1a1ia1 18 ADLTRHIRIHTG 29 (29)
T ss_dssp HHHHHHTHHHHT
T ss_pred hHhhhhcCccCC
Confidence 568899999876
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=12.23 E-value=3.1e+02 Score=21.41 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Q 020939 184 RPFFISAVLVSCAGYICVPLLKSLKI 209 (319)
Q Consensus 184 l~~liAfllS~lltpi~Ipllrklkl 209 (319)
.+.+...+++.+++-.+=-+++|+|.
T Consensus 117 ~sl~~~~~ia~~~G~~lPlll~klg~ 142 (173)
T d2yvxa3 117 VSLVLIVFFANLVGAMLPFLLRRLGV 142 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444444454444433335777665
No 9
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=12.12 E-value=2.1e+02 Score=19.41 Aligned_cols=13 Identities=15% Similarity=0.031 Sum_probs=10.5
Q ss_pred eceeeeccccCcC
Q 020939 61 YTAVQVGAFNDDF 73 (319)
Q Consensus 61 ~~~~~~~af~~d~ 73 (319)
..+.|+.|.|.|-
T Consensus 23 ~~v~~v~A~D~D~ 35 (107)
T d1l3wa4 23 EKIISLVAQDPDK 35 (107)
T ss_dssp EEEEECCEECCCT
T ss_pred CEEEEeEEecCCc
Confidence 4578899999984
No 10
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.66 E-value=19 Score=22.12 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=10.1
Q ss_pred chhhhccccccc
Q 020939 5 SSFQRHSQSHLG 16 (319)
Q Consensus 5 ~~~~~~~~~~~~ 16 (319)
+.++||++.|.|
T Consensus 17 ~~L~~H~r~Htg 28 (36)
T d2dlka2 17 KHLKEHMKLHSD 28 (36)
T ss_dssp HHHHHHHHHHHT
T ss_pred hHhccccCeeCC
Confidence 468899999987
Done!