Query 020940
Match_columns 319
No_of_seqs 151 out of 174
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ich_A Putative ATTH; structur 93.4 0.23 8E-06 47.4 8.4 55 98-155 167-225 (335)
2 1nvp_C Transcription initiatio 22.3 47 0.0016 25.0 2.2 22 103-124 54-75 (76)
3 1nh2_C Transcription initiatio 19.6 58 0.002 24.7 2.2 22 103-124 56-77 (79)
4 2vgp_C Inner centromere protei 11.5 55 0.0019 21.9 0.2 30 283-312 3-32 (43)
5 1rm1_C Transcription initiatio 8.8 1.4E+02 0.0048 27.7 1.9 36 89-124 243-284 (286)
6 1mj4_A Sulfite oxidase; cytoch 7.5 2.2E+02 0.0076 20.8 2.3 14 105-118 22-35 (82)
7 1h8g_A Major autolysin; cholin 7.5 3.1E+02 0.011 20.4 3.2 23 104-126 36-58 (95)
8 1x3x_A Cytochrome B5; hemoprot 6.9 2.3E+02 0.0078 20.7 2.1 15 104-118 19-33 (82)
9 2ibj_A Cytochrome B5, CYTB5; F 6.7 2.4E+02 0.0081 20.8 2.1 15 104-118 22-36 (88)
10 1cxy_A Cytochrome B5; helix, b 6.6 2.6E+02 0.009 20.7 2.3 15 104-118 23-37 (90)
No 1
>2ich_A Putative ATTH; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: NHE; 2.00A {Nitrosomonas europaea} SCOP: b.176.1.1
Probab=93.35 E-value=0.23 Score=47.37 Aligned_cols=55 Identities=15% Similarity=0.417 Sum_probs=42.9
Q ss_pred ecCceeEEEEEECCEEEEecCCcccccCCCCCCCCC----CcEEEEeccCCCCCCceEEEEc
Q 020940 98 MAGGLSTGWIEWDGERFEFQDAPSYSEKNWGGAFPR----KWFWVQCNVFEGATGEVALTAG 155 (319)
Q Consensus 98 ~~h~~asG~I~~nG~~~~f~~g~gY~EKNWG~sFP~----~w~W~Q~n~F~~~~~~~slt~a 155 (319)
.-+-.++|+|+++|+.+.++ +.+..++.||+++.. .|=|..-+ +++.. ++|+..-
T Consensus 167 ~P~l~v~Gtl~~~G~~~~V~-G~aW~DrEWss~~l~~~q~GWDWf~l~-Lddg~-~Lm~~~l 225 (335)
T 2ich_A 167 EPHLQVSGIINRQGEDIPVT-GTAWLDREWSSEYLDPNAAGWDWISAN-LDDGS-ALMAFQI 225 (335)
T ss_dssp EEEEEEEEEEEESSCEEEEE-EEEEEEEEEESSCSCTTEEEEEEEEEE-ETTSC-EEEEEEE
T ss_pred cccEEEEEEEEECCEEEEEE-ecEEEcccCcCccCCCCCCceEEEEEE-cCCCC-cEEEEEE
Confidence 33445799999999999996 789999999999866 78898777 55554 3776543
No 2
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=22.28 E-value=47 Score=24.97 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=18.6
Q ss_pred eEEEEEECCEEEEecCCccccc
Q 020940 103 STGWIEWDGERFEFQDAPSYSE 124 (319)
Q Consensus 103 asG~I~~nG~~~~f~~g~gY~E 124 (319)
-.|-+.+||+.|-|..+.|-.|
T Consensus 54 KdGim~ingkdy~F~ka~GE~e 75 (76)
T 1nvp_C 54 KDGIMNLNGRDYIFSKAIGDAE 75 (76)
T ss_dssp EEEEEEETTEEEEEEEEEEEEE
T ss_pred eccEEEECCEEEEEeccceeec
Confidence 3899999999999998887544
No 3
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=19.64 E-value=58 Score=24.67 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.6
Q ss_pred eEEEEEECCEEEEecCCccccc
Q 020940 103 STGWIEWDGERFEFQDAPSYSE 124 (319)
Q Consensus 103 asG~I~~nG~~~~f~~g~gY~E 124 (319)
-.|-+.+||+.|-|..+.|-.|
T Consensus 56 KdGi~~ingkDy~F~ka~GE~e 77 (79)
T 1nh2_C 56 KDGVVTINRNDYTFQKAQVEAE 77 (79)
T ss_dssp EEEEEEETTEEEEEEEEEEEEE
T ss_pred eeeEEEECCEEEEEecccEEEE
Confidence 3899999999999998887544
No 4
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=11.49 E-value=55 Score=21.89 Aligned_cols=30 Identities=23% Similarity=0.624 Sum_probs=19.8
Q ss_pred cccccccchHHHhhhcccceecccccccCC
Q 020940 283 TWKAKTATPELLRRTLNVPVDVDGLFGFVP 312 (319)
Q Consensus 283 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
.|-......+.|++-.--|.|++.||+.+.
T Consensus 3 ~WA~~~~L~~~l~~Q~~~p~D~d~iFG~I~ 32 (43)
T 2vgp_C 3 AWASGNLLTQAIRQQYYKPIDVDRMYGTID 32 (43)
T ss_dssp GGGSHHHHHHHHHHHHHSCCCHHHHTTTSC
T ss_pred cccchHHHHHHHHHHHccCCCHHHHcCCCC
Confidence 355555566666665434779999999754
No 5
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae}
Probab=8.82 E-value=1.4e+02 Score=27.69 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=27.8
Q ss_pred CCCc-ceEEEecCce-----eEEEEEECCEEEEecCCccccc
Q 020940 89 VFEP-HWQICMAGGL-----STGWIEWDGERFEFQDAPSYSE 124 (319)
Q Consensus 89 ~~e~-hw~V~~~h~~-----asG~I~~nG~~~~f~~g~gY~E 124 (319)
+|-| |=.|.-.+.. -.|-+.+|||.|-|..+.|-.|
T Consensus 243 ~vlc~ydKV~R~knkWKc~lKdGi~~ingkdy~F~ka~GE~e 284 (286)
T 1rm1_C 243 LMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAE 284 (286)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred eEEEEEeeeeecccceeEEeeeeeEEECCceeeeeeccEEEe
Confidence 4557 7777766543 3899999999999998888654
No 6
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=7.55 E-value=2.2e+02 Score=20.76 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=12.6
Q ss_pred EEEEECCEEEEecC
Q 020940 105 GWIEWDGERFEFQD 118 (319)
Q Consensus 105 G~I~~nG~~~~f~~ 118 (319)
-||.++|+.||+++
T Consensus 22 ~wv~i~g~VYDvt~ 35 (82)
T 1mj4_A 22 IWVTLGSEVFDVTE 35 (82)
T ss_dssp EEEEETTEEEECTT
T ss_pred eEEEECCEEEEchH
Confidence 49999999999985
No 7
>1h8g_A Major autolysin; choline-binding domain, cell WALL attachment; 2.4A {Streptococcus pneumoniae} SCOP: b.109.1.1
Probab=7.53 E-value=3.1e+02 Score=20.45 Aligned_cols=23 Identities=17% Similarity=0.487 Sum_probs=11.5
Q ss_pred EEEEEECCEEEEecCCcccccCC
Q 020940 104 TGWIEWDGERFEFQDAPSYSEKN 126 (319)
Q Consensus 104 sG~I~~nG~~~~f~~g~gY~EKN 126 (319)
+|++.+||+-|=|+...|..-+|
T Consensus 36 tGW~~~~g~wYY~~~~~G~m~~~ 58 (95)
T 1h8g_A 36 TGWVKYKDTWYYLDAKEGAMVSN 58 (95)
T ss_dssp CEEEEETTEEEEECTTTCCBCCS
T ss_pred cCEEEECCeEEeEcCCCCcEEeC
Confidence 55555555555554334444444
No 8
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=6.94 E-value=2.3e+02 Score=20.66 Aligned_cols=15 Identities=33% Similarity=0.729 Sum_probs=13.3
Q ss_pred EEEEEECCEEEEecC
Q 020940 104 TGWIEWDGERFEFQD 118 (319)
Q Consensus 104 sG~I~~nG~~~~f~~ 118 (319)
+-||.++|+.||+++
T Consensus 19 ~~wv~i~g~VYDvT~ 33 (82)
T 1x3x_A 19 DLWIIYDGEVHDMTS 33 (82)
T ss_dssp EEEEEETTEEEECGG
T ss_pred CEEEEECCEEEECCc
Confidence 569999999999985
No 9
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=6.70 E-value=2.4e+02 Score=20.83 Aligned_cols=15 Identities=7% Similarity=0.412 Sum_probs=13.4
Q ss_pred EEEEEECCEEEEecC
Q 020940 104 TGWIEWDGERFEFQD 118 (319)
Q Consensus 104 sG~I~~nG~~~~f~~ 118 (319)
+-||.++|+.||+++
T Consensus 22 ~~wv~i~g~VYDvT~ 36 (88)
T 2ibj_A 22 KNWFIIHNNVYDVTA 36 (88)
T ss_dssp EEEEEETTEEEECGG
T ss_pred CEEEEECCEEEECCc
Confidence 569999999999985
No 10
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=6.56 E-value=2.6e+02 Score=20.73 Aligned_cols=15 Identities=13% Similarity=0.627 Sum_probs=13.4
Q ss_pred EEEEEECCEEEEecC
Q 020940 104 TGWIEWDGERFEFQD 118 (319)
Q Consensus 104 sG~I~~nG~~~~f~~ 118 (319)
+-||.++|+.||+++
T Consensus 23 ~~wv~i~g~VYDvT~ 37 (90)
T 1cxy_A 23 DCWMAIHGKVYDLTP 37 (90)
T ss_dssp EEEEEETTEEEECTT
T ss_pred CEEEEECCEEEECcc
Confidence 569999999999986
Done!