Citrus Sinensis ID: 020943

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMNLV
cHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHccccccccccccHHHHHccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHcccccccc
ccHHHHHHHHHcccccccccccccHccccccHHHHHccccccccccccccccccccEEEEEEEccccccccccccccccEEEEEEccccccEHHHHHHcHHHHHHHccccEEEEEEcHHHHccccccHHHHHHHHHHHHHHHHHcccccccEEEEEHHHccHHHHHHHHHHccccHHHHHccHHHHHHHHccccccccHHHHcHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccEEEccccccccEcccccccEcccccccHHHccEccccHHHHHHHHHcccccccccc
MGRALLSHFLIvsnssprlvsslkcrsrgglpskycktpglirqnrnlathngcgfrcycnvslseptapvassssvkkrivsgvqptgsihlGNYLGAIKNWIALQNSYETLFFIVDLHaitlpydtqqLSKATRETAAIYLACgidnskasVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEkshkaggenvGVALLTYPVLMASDILlyqsdfvpvgedqKQHLELTRELAERVNYLYGgrkwkklggrggaifkvpeplippagarvMSLTDGlskmsksapsdqsrinlldpkdvsHKFFRRFLTFLMNLV
MGRALLSHFlivsnssprlvsslkcrsrgglpskycktpglIRQNRNLATHNGCGFRCYCNVSLSEPTapvassssvkKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYggrkwkklggrGGAIFkvpeplippaGARVMSLTDGLSKMSksapsdqsrinlldpkdvsHKFFRRFLTFLMNLV
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNylyggrkwkklggrggAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMNLV
*****LSHFLIVS******V**LKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSL****************IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIP*********************************DVSHKFFRRFLTFLMN**
******S*FLIVSNSSPR**************************************************************IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF***************LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM******************RINLLDPKDVSHKFFRRFLTFL****
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLS**************RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD*************SRINLLDPKDVSHKFFRRFLTFLMNLV
*****L****IVSNSSPRL*SSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSE**********VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD*LSKMSKSAPSDQSRINLLDPKDVSHKFFRRF********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMNLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query319 2.2.26 [Sep-21-2011]
Q8DHG3330 Tryptophan--tRNA ligase O yes no 0.702 0.678 0.626 6e-79
Q8YXE4335 Tryptophan--tRNA ligase O yes no 0.695 0.662 0.592 4e-75
Q7TTU9 337 Tryptophan--tRNA ligase O yes no 0.711 0.673 0.565 2e-73
Q7TV34 337 Tryptophan--tRNA ligase O yes no 0.711 0.673 0.569 3e-73
P73655 337 Tryptophan--tRNA ligase O N/A no 0.680 0.643 0.597 5e-73
Q7NCG8336 Tryptophan--tRNA ligase O yes no 0.702 0.666 0.571 5e-73
Q7VBM9 339 Tryptophan--tRNA ligase O yes no 0.667 0.628 0.582 7e-73
Q7V286 338 Tryptophan--tRNA ligase O yes no 0.699 0.659 0.542 2e-70
Q9ZD76330 Tryptophan--tRNA ligase O yes no 0.695 0.672 0.517 4e-65
Q92HR1330 Tryptophan--tRNA ligase O yes no 0.695 0.672 0.521 4e-65
>sp|Q8DHG3|SYW_THEEB Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=trpS PE=3 SV=1 Back     alignment and function desciption
 Score =  294 bits (752), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 146/233 (62%), Positives = 172/233 (73%), Gaps = 9/233 (3%)

Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
           ++SGVQPTGS+HLGNYLGAI+NW+A Q  YE  F +VDLHAIT+P+D  +L+  T   AA
Sbjct: 1   MLSGVQPTGSLHLGNYLGAIRNWVAGQAEYENYFCVVDLHAITVPHDPAELAANTYTVAA 60

Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
           +YLACGID + A++FVQSHV AH EL WLL+  TP+ WL  MIQFKEK+ K  GENV   
Sbjct: 61  LYLACGIDPAHATIFVQSHVSAHAELTWLLNCITPLNWLEDMIQFKEKAVKQ-GENVAAG 119

Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
           LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++A RVNYL+   +          I 
Sbjct: 120 LLDYPVLMAADILLYDADLVPVGEDQKQHLELTRDIAARVNYLFARNQ--------PPIL 171

Query: 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313
           K+PEPLIP AGARVMSLTDG  KMSKS PS+ SRINLLD  D   K  +R  T
Sbjct: 172 KLPEPLIPKAGARVMSLTDGTKKMSKSDPSELSRINLLDSPDEIRKKIKRCKT 224

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2
>sp|Q8YXE4|SYW_NOSS1 Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7TTU9|SYW_SYNPX Tryptophan--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7TV34|SYW_PROMM Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|P73655|SYW_SYNY3 Tryptophan--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trpS PE=3 SV=2 Back     alignment and function description
>sp|Q7NCG8|SYW_GLOVI Tryptophan--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7VBM9|SYW_PROMA Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7V286|SYW_PROMP Tryptophan--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q9ZD76|SYW_RICPR Tryptophan--tRNA ligase OS=Rickettsia prowazekii (strain Madrid E) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q92HR1|SYW_RICCN Tryptophan--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=trpS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
255550960412 tryptophanyl-tRNA synthetase, putative [ 0.959 0.742 0.817 1e-142
225429361416 PREDICTED: tryptophanyl-tRNA synthetase 0.971 0.745 0.789 1e-138
449436894414 PREDICTED: tryptophan--tRNA ligase-like 0.962 0.741 0.789 1e-137
224075399403 predicted protein [Populus trichocarpa] 0.915 0.724 0.787 1e-132
356518366393 PREDICTED: tryptophanyl-tRNA synthetase- 0.805 0.653 0.832 1e-122
356510049398 PREDICTED: tryptophanyl-tRNA synthetase- 0.742 0.595 0.890 1e-121
57899972399 putative tryptophanyl-tRNA synthetase [O 0.918 0.734 0.718 1e-119
357136379399 PREDICTED: tryptophanyl-tRNA synthetase- 0.918 0.734 0.718 1e-118
226491928405 uncharacterized protein LOC100272291 [Ze 0.808 0.637 0.802 1e-117
242058649405 hypothetical protein SORBIDRAFT_03g03427 0.937 0.738 0.699 1e-117
>gi|255550960|ref|XP_002516528.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] gi|223544348|gb|EEF45869.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 256/313 (81%), Positives = 273/313 (87%), Gaps = 7/313 (2%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           MGRALLS FL+ SNS   L S+    S  GL  +Y K+P LI QN      +   FRC+C
Sbjct: 1   MGRALLSQFLL-SNSPTCLAST--SLSLNGLRRQYLKSPRLISQN----ARHAAAFRCHC 53

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120
           +VS ++P AP +SSS+VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN+YETLFFIVDLH
Sbjct: 54  SVSAAQPDAPASSSSAVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNTYETLFFIVDLH 113

Query: 121 AITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN 180
           AITLPYDT QLSKATR TAAIYLACG+DNS+ASVFVQSHVRAHVELMWLLSSATPIGWLN
Sbjct: 114 AITLPYDTPQLSKATRNTAAIYLACGVDNSRASVFVQSHVRAHVELMWLLSSATPIGWLN 173

Query: 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 240
           +MIQFKEKS KAG ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV
Sbjct: 174 RMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERV 233

Query: 241 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300
           NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL+KMSKSAPSDQSRINLLDP
Sbjct: 234 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLAKMSKSAPSDQSRINLLDP 293

Query: 301 KDVSHKFFRRFLT 313
           KDV     +R  T
Sbjct: 294 KDVIANKIKRCKT 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225429361|ref|XP_002273029.1| PREDICTED: tryptophanyl-tRNA synthetase [Vitis vinifera] gi|296081565|emb|CBI20570.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449436894|ref|XP_004136227.1| PREDICTED: tryptophan--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224075399|ref|XP_002304617.1| predicted protein [Populus trichocarpa] gi|222842049|gb|EEE79596.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356518366|ref|XP_003527850.1| PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|356510049|ref|XP_003523753.1| PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|57899972|dbj|BAD87908.1| putative tryptophanyl-tRNA synthetase [Oryza sativa Japonica Group] gi|125527667|gb|EAY75781.1| hypothetical protein OsI_03697 [Oryza sativa Indica Group] gi|125571983|gb|EAZ13498.1| hypothetical protein OsJ_03415 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357136379|ref|XP_003569782.1| PREDICTED: tryptophanyl-tRNA synthetase-like isoform 2 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|226491928|ref|NP_001140250.1| uncharacterized protein LOC100272291 [Zea mays] gi|194698694|gb|ACF83431.1| unknown [Zea mays] gi|414880562|tpg|DAA57693.1| TPA: hypothetical protein ZEAMMB73_474699 [Zea mays] Back     alignment and taxonomy information
>gi|242058649|ref|XP_002458470.1| hypothetical protein SORBIDRAFT_03g034270 [Sorghum bicolor] gi|241930445|gb|EES03590.1| hypothetical protein SORBIDRAFT_03g034270 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
TAIR|locus:2043570 412 OVA4 "ovule abortion 4" [Arabi 0.902 0.699 0.649 1e-93
UNIPROTKB|P00954 334 trpS "tryptophanyl-tRNA synthe 0.686 0.655 0.506 1.3e-54
TIGR_CMR|BA_1188329 BA_1188 "tryptophanyl-tRNA syn 0.664 0.644 0.511 6.3e-53
TIGR_CMR|ECH_0167333 ECH_0167 "tryptophanyl-tRNA sy 0.667 0.639 0.495 6.3e-53
TIGR_CMR|SO_0294332 SO_0294 "tryptophanyl-tRNA syn 0.677 0.650 0.491 8e-53
TIGR_CMR|CPS_0480 335 CPS_0480 "tryptophanyl-tRNA sy 0.686 0.653 0.476 1.1e-50
UNIPROTKB|P67590336 trpS "Tryptophan--tRNA ligase" 0.717 0.681 0.471 1.3e-50
TIGR_CMR|APH_0035 331 APH_0035 "tryptophanyl-tRNA sy 0.661 0.637 0.497 5.8e-50
TIGR_CMR|SPO_0392 338 SPO_0392 "tryptophanyl-tRNA sy 0.695 0.656 0.451 1.8e-48
UNIPROTKB|Q9KNV7 338 trpS "Tryptophan--tRNA ligase" 0.686 0.647 0.473 2.3e-48
TAIR|locus:2043570 OVA4 "ovule abortion 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 200/308 (64%), Positives = 230/308 (74%)

Query:     1 MGRAL-LSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCY 59
             MG A  LSHFLI+S+S  R        SR G  ++    P  +  + +  +  G GFRC 
Sbjct:     1 MGHATSLSHFLILSSS--RF-------SRLGSLTRLLSKPTSLSGSFSSISVTGQGFRCC 51

Query:    60 CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDL 119
             C+V+ ++ T+P     SVKKR+VSGVQPTGS+HLGNYLGAIKNW+ALQ++YETLF IVD 
Sbjct:    52 CSVA-TDDTSP-----SVKKRVVSGVQPTGSVHLGNYLGAIKNWVALQDTYETLFIIVDH 105

Query:   120 HAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWL 179
             HAITLPYDT+QL KAT +TAA+YLACGID SKASVFVQSHV AHVELMWLL S+TPIGWL
Sbjct:   106 HAITLPYDTRQLGKATTDTAALYLACGIDVSKASVFVQSHVPAHVELMWLLCSSTPIGWL 165

Query:   180 NKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239
              KMIQFKEKS K G EN  V L TYP LM +DILLYQSDFVPVGEDQKQH+EL RE+A+R
Sbjct:   166 QKMIQFKEKSRKEGVENASVGLFTYPDLMTADILLYQSDFVPVGEDQKQHIELAREIAQR 225

Query:   240 VNXXXXXXX----XXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295
             VN                    ++FK+PEPLIP AGARVMSLTDGLSKMSKSAPSDQSRI
Sbjct:   226 VNHLYGGKKWKKLGGYEIFRGGSLFKIPEPLIPQAGARVMSLTDGLSKMSKSAPSDQSRI 285

Query:   296 NLLDPKDV 303
             NLLD KD+
Sbjct:   286 NLLDSKDL 293
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0048481 "ovule development" evidence=RCA;IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009658 "chloroplast organization" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
UNIPROTKB|P00954 trpS "tryptophanyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1188 BA_1188 "tryptophanyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0167 ECH_0167 "tryptophanyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0294 SO_0294 "tryptophanyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0480 CPS_0480 "tryptophanyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|P67590 trpS "Tryptophan--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0035 APH_0035 "tryptophanyl-tRNA synthetase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0392 SPO_0392 "tryptophanyl-tRNA synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNV7 trpS "Tryptophan--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7VBM9SYW_PROMA6, ., 1, ., 1, ., 20.58290.66770.6283yesno
Q7TV34SYW_PROMM6, ., 1, ., 1, ., 20.56960.71150.6735yesno
Q9AC05SYW_CAUCR6, ., 1, ., 1, ., 20.52460.66450.6162yesno
Q9K8Y2SYW_BACHD6, ., 1, ., 1, ., 20.50630.69900.6757yesno
Q7TTU9SYW_SYNPX6, ., 1, ., 1, ., 20.56540.71150.6735yesno
Q7V286SYW_PROMP6, ., 1, ., 1, ., 20.54270.69900.6597yesno
Q92HR1SYW_RICCN6, ., 1, ., 1, ., 20.52130.69590.6727yesno
P67588SYW_ECOL66, ., 1, ., 1, ., 20.52170.67710.6467yesno
Q8DHG3SYW_THEEB6, ., 1, ., 1, ., 20.62660.70210.6787yesno
Q7NCG8SYW_GLOVI6, ., 1, ., 1, ., 20.57140.70210.6666yesno
Q83JA5SYW_SHIFL6, ., 1, ., 1, ., 20.52170.67710.6467yesno
Q71XG7SYW_LISMF6, ., 1, ., 1, ., 20.51780.65830.6344yesno
Q9EYY6SYW_ENTAE6, ., 1, ., 1, ., 20.52170.67710.6467yesno
P0A2P2SYW_SALTY6, ., 1, ., 1, ., 20.52600.67710.6467yesno
Q7VPB2SYW_HAEDU6, ., 1, ., 1, ., 20.51930.71780.6695yesno
Q7VIP6SYW_HELHP6, ., 1, ., 1, ., 20.51030.71470.6867yesno
P43835SYW_HAEIN6, ., 1, ., 1, ., 20.51300.67710.6467yesno
Q8YXE4SYW_NOSS16, ., 1, ., 1, ., 20.59220.69590.6626yesno
Q929H5SYW_LISIN6, ., 1, ., 1, ., 20.51330.65830.6344yesno
Q81TS6SYW_BACAN6, ., 1, ., 1, ., 20.51310.66770.6474yesno
Q8ZJF2SYW_YERPE6, ., 1, ., 1, ., 20.51010.71150.6637yesno
P21656SYW_BACSU6, ., 1, ., 1, ., 20.52150.68020.6575yesno
Q8R9X8SYW_THETN6, ., 1, ., 1, ., 20.52340.69270.6758yesno
P57956SYW_PASMU6, ., 1, ., 1, ., 20.53210.68650.6576yesno
P56396SYW_HELPY6, ., 1, ., 1, ., 20.50820.71780.7024yesno
Q8Y577SYW_LISMO6, ., 1, ., 1, ., 20.51780.65830.6344yesno
Q4UL98SYW_RICFE6, ., 1, ., 1, ., 20.50420.69590.6727yesno
Q9ZJX4SYW_HELPJ6, ., 1, ., 1, ., 20.51650.71780.7024yesno
Q1RIE3SYW_RICBR6, ., 1, ., 1, ., 20.52130.69590.6768yesno
Q9ZD76SYW_RICPR6, ., 1, ., 1, ., 20.51700.69590.6727yesno
Q7MAE0SYW_WOLSU6, ., 1, ., 1, ., 20.51020.72100.7012yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.20.824
3rd Layer6.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00031274
aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.114390001
Predicted protein (351 aa)
•     • 0.920
gw1.XI.471.1
tryptophan synthase, beta chain (EC-4.2.1.20) (398 aa)
•    •• 0.909
fgenesh4_pg.C_LG_XIII000422
tryptophan synthase, beta chain (EC-4.2.1.20) (410 aa)
•    •• 0.907
estExt_Genewise1_v1.C_LG_IX0414
SubName- Full=Putative uncharacterized protein; (404 aa)
    ••• 0.903
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
•  •  • 0.900
fgenesh4_pg.C_scaffold_803000002
hypothetical protein (316 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_II0422
SubName- Full=Putative uncharacterized protein; (310 aa)
•    •• 0.897
estExt_fgenesh4_pg.C_LG_V1322
tryptophan synthase (EC-4.2.1.20) (310 aa)
•    •• 0.896
gw1.XI.1757.1
tryptophan synthase, beta chain (EC-4.2.1.20) (378 aa)
•    •• 0.888
gw1.XII.1858.1
anthranilate phosphoribosyltransferase (EC-2.4.2.18) (334 aa)
•     • 0.861

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
PLN02886 389 PLN02886, PLN02886, aminoacyl-tRNA ligase 0.0
PRK00927 333 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; 1e-142
COG0180314 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Trans 1e-105
cd00806280 cd00806, TrpRS_core, catalytic core domain of tryp 1e-101
TIGR00233 327 TIGR00233, trpS, tryptophanyl-tRNA synthetase 2e-88
pfam00579291 pfam00579, tRNA-synt_1b, tRNA synthetases class I 1e-77
PRK12282 333 PRK12282, PRK12282, tryptophanyl-tRNA synthetase I 1e-65
PRK12283 398 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; 9e-65
PRK12556332 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; 4e-55
PRK12284 431 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; 4e-44
cd00395273 cd00395, Tyr_Trp_RS_core, catalytic core domain of 3e-32
PRK12285368 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; 1e-12
TIGR00234 377 TIGR00234, tyrS, tyrosyl-tRNA synthetase 4e-08
cd00802143 cd00802, class_I_aaRS_core, catalytic core domain 1e-07
PRK08560329 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Valid 9e-07
cd00805269 cd00805, TyrRS_core, catalytic core domain of tyro 3e-04
COG0162 401 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translatio 4e-04
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase Back     alignment and domain information 
 Score =  517 bits (1332), Expect = 0.0
 Identities = 202/277 (72%), Positives = 223/277 (80%), Gaps = 6/277 (2%)

Query: 27  SRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQ 86
           S  G   +    PG +  +   A+   C   C    + + P        + KKR+VSGVQ
Sbjct: 1   SSLGSLGRLLSKPGPLSGS---ASSASC---CSAATAATAPEKEAPPKVARKKRVVSGVQ 54

Query: 87  PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACG 146
           PTGSIHLGNYLGAIKNW+ALQ +Y+T F +VDLHAITLP+D ++L KATR TAAIYLACG
Sbjct: 55  PTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACG 114

Query: 147 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV 206
           ID SKASVFVQSHV AH ELMWLLS +TPIGWLNKMIQFKEKS KAG ENVGV LLTYPV
Sbjct: 115 IDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPV 174

Query: 207 LMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPL 266
           LMASDILLYQ+D VPVGEDQKQHLELTR++AERVN LYGGRKWKKLGGRGG++FKVPE L
Sbjct: 175 LMASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEAL 234

Query: 267 IPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 303
           IPPAGARVMSLTDG SKMSKSAPSDQSRINLLDP DV
Sbjct: 235 IPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDV 271

Length = 389
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y) Back     alignment and domain information
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237036 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 319
PLN02886 389 aminoacyl-tRNA ligase 100.0
KOG2713347 consensus Mitochondrial tryptophanyl-tRNA syntheta 100.0
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 100.0
PRK12284 431 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK00927 333 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 100.0
PRK12283 398 tryptophanyl-tRNA synthetase; Reviewed 100.0
TIGR00233 328 trpS tryptophanyl-tRNA synthetase. This model repr 100.0
PRK12282 333 tryptophanyl-tRNA synthetase II; Reviewed 100.0
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 100.0
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK08560329 tyrosyl-tRNA synthetase; Validated 100.0
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 100.0
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 100.0
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 100.0
PTZ00348 682 tyrosyl-tRNA synthetase; Provisional 100.0
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 100.0
PLN02486383 aminoacyl-tRNA ligase 100.0
PRK05912 408 tyrosyl-tRNA synthetase; Validated 100.0
PRK13354 410 tyrosyl-tRNA synthetase; Provisional 100.0
TIGR00234 377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 100.0
KOG2144 360 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Tr 100.0
COG0162 401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 100.0
KOG2145397 consensus Cytoplasmic tryptophanyl-tRNA synthetase 100.0
PTZ00348682 tyrosyl-tRNA synthetase; Provisional 99.98
KOG2623 467 consensus Tyrosyl-tRNA synthetase [Translation, ri 99.78
cd00808239 GluRS_core catalytic core domain of discriminating 99.66
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.52
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 99.2
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 98.8
cd00674353 LysRS_core_class_I catalytic core domain of class 98.79
PRK01406 476 gltX glutamyl-tRNA synthetase; Reviewed 98.72
PRK00750 510 lysK lysyl-tRNA synthetase; Reviewed 98.72
PRK14895 513 gltX glutamyl-tRNA synthetase; Provisional 98.68
TIGR00464 470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 98.64
COG0008 472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 98.53
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 98.5
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 98.42
PLN03233 523 putative glutamate-tRNA ligase; Provisional 98.39
cd09287240 GluRS_non_core catalytic core domain of non-discri 98.39
PRK12410 433 glutamylglutaminyl-tRNA synthetase; Provisional 98.37
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 98.33
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 98.31
PLN02627 535 glutamyl-tRNA synthetase 98.28
PRK12558 445 glutamyl-tRNA synthetase; Provisional 98.27
PRK04156 567 gltX glutamyl-tRNA synthetase; Provisional 98.23
PLN02907 722 glutamate-tRNA ligase 98.16
cd02156105 nt_trans nucleotidyl transferase superfamily. nt_t 98.07
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 98.05
PLN02859 788 glutamine-tRNA ligase 98.04
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 97.83
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 97.81
PRK01611 507 argS arginyl-tRNA synthetase; Reviewed 97.79
COG1384 521 LysS Lysyl-tRNA synthetase (class I) [Translation, 97.73
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 97.61
PRK05347 554 glutaminyl-tRNA synthetase; Provisional 97.59
TIGR00440 522 glnS glutaminyl-tRNA synthetase. This protein is a 97.51
PTZ00437 574 glutaminyl-tRNA synthetase; Provisional 97.5
PRK00260 463 cysS cysteinyl-tRNA synthetase; Validated 97.46
TIGR00463 560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 97.44
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 97.44
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 97.3
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 97.19
TIGR00435 465 cysS cysteinyl-tRNA synthetase. This model finds t 96.21
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 94.29
KOG1149 524 consensus Glutamyl-tRNA synthetase (mitochondrial) 93.69
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 93.05
PF09334 391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 92.77
PLN02224 616 methionine-tRNA ligase 92.47
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 91.99
KOG1147 712 consensus Glutamyl-tRNA synthetase [Translation, r 91.97
PRK12268 556 methionyl-tRNA synthetase; Reviewed 90.62
PLN02610 801 probable methionyl-tRNA synthetase 89.83
PRK14536 490 cysS cysteinyl-tRNA synthetase; Provisional 88.81
PRK11893 511 methionyl-tRNA synthetase; Reviewed 87.85
TIGR00398 530 metG methionyl-tRNA synthetase. The methionyl-tRNA 87.69
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 87.65
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 87.37
PLN02563 963 aminoacyl-tRNA ligase 87.35
PRK12267 648 methionyl-tRNA synthetase; Reviewed 87.01
TIGR00456 566 argS arginyl-tRNA synthetase. This model recognize 86.87
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 86.87
cd00817 382 ValRS_core catalytic core domain of valyl-tRNA syn 86.65
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 86.37
PRK11893 511 methionyl-tRNA synthetase; Reviewed 86.08
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 83.63
PLN02946 557 cysteine-tRNA ligase 83.16
cd00817382 ValRS_core catalytic core domain of valyl-tRNA syn 83.04
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 81.55
PRK12418384 cysteinyl-tRNA synthetase; Provisional 81.32
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 80.94
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 80.87
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 80.16
>PLN02886 aminoacyl-tRNA ligase Back     alignment and domain information 
Probab=100.00  E-value=5.7e-77  Score=582.50  Aligned_cols=262  Identities=76%  Similarity=1.143  Sum_probs=236.3

Q ss_pred             ceeeeccCCCCCCCCCCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHH
Q 020943           57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR  136 (319)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~i~~~~~  136 (319)
                      +|+++.++..+.++.+++.-.++++|+||||||.+|||||+|++++|++||++++++|+||||||+|.++++++++++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~  104 (389)
T PLN02886         25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR  104 (389)
T ss_pred             hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence            34444443444444444444567899999999999999999999999999999999999999999999889999999999


Q ss_pred             HHHHHHHHcCCCCCCcEEEEcccchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccC
Q 020943          137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ  216 (319)
Q Consensus       137 ~~~~~~lA~GlDp~k~~if~QSd~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~  216 (319)
                      +++++|+||||||+|++||+||++++|.+|+|+|+|.+++++|+|++|||++.+..+.+++++|+|+||+|||||||+|+
T Consensus       105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~  184 (389)
T PLN02886        105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ  184 (389)
T ss_pred             HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence            99999999999999999999999999999999999999999999999999998776546789999999999999999999


Q ss_pred             CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020943          217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN  296 (319)
Q Consensus       217 adlvpvG~DQ~~hleLaRdia~r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~  296 (319)
                      +|+||||+||+||+|||||||+|||+.||.+.++++|++.+.+|++|++++++.+++||||+||.+|||||+|+++|+|+
T Consensus       185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~  264 (389)
T PLN02886        185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRIN  264 (389)
T ss_pred             CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEE
Confidence            99999999999999999999999999998655566676667789999999987668999998888899999997779999


Q ss_pred             cCCCHHHHHHhhhccccCCCCC
Q 020943          297 LLDPKDVSHKFFRRFLTFLMNL  318 (319)
Q Consensus       297 L~Dspe~I~kKI~~A~Td~~~~  318 (319)
                      |+|+||+|++|||+|+||+...
T Consensus       265 L~Ds~e~I~kKI~~a~TD~~~~  286 (389)
T PLN02886        265 LLDPPDVIANKIKRCKTDSFPG  286 (389)
T ss_pred             ecCCHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999998753

>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>cd02156 nt_trans nucleotidyl transferase superfamily Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
3n9i_A 346 Crystal Structure Of Tryptophanyl-Trna Synthetase F 2e-61
3prh_A 388 Tryptophanyl-Trna Synthetase Val144pro Mutant From 2e-59
1i6m_A328 1.7 High Resolution Experimental Phases For Tryptop 1e-57
1d2r_A326 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl 2e-54
1i6k_A328 1.7 High Resolution Experimental Phases For Tryptop 5e-54
3fi0_A326 Crystal Structure Analysis Of B. Stearothermophilus 6e-54
3sz3_A 341 Crystal Structure Of Tryptophanyl-Trna Synthetase F 9e-54
3fhj_D287 Independent Saturation Of Three Trprs Subsites Gene 1e-51
2el7_A337 Crystal Structure Of Tryptophanyl-Trna Synthetase F 1e-49
3fhj_E293 Independent Saturation Of Three Trprs Subsites Gene 1e-47
3fhj_A300 Independent Saturation Of Three Trprs Subsites Gene 2e-47
3fhj_C280 Independent Saturation Of Three Trprs Subsites Gene 2e-47
3fhj_F297 Independent Saturation Of Three Trprs Subsites Gene 2e-46
3fhj_B292 Independent Saturation Of Three Trprs Subsites Gene 3e-43
2yy5_A 348 Crystal Structure Of Tryptophanyl-Trna Synthetase F 4e-42
3u1v_A 338 X-Ray Structure Of De Novo Design Cysteine Esterase 2e-40
2g36_A340 Crystal Structure Of Tryptophanyl-Trna Synthetase ( 8e-36
3m5w_A322 Crystal Structure Of Tryptophanyl-Trna Synthetase F 2e-33
2a4m_A331 Structure Of Trprs Ii Bound To Atp Length = 331 2e-21
1yi8_B351 Crystal Structure Of Tryptophanyl Trrna Synthetase 1e-20
2cyb_A323 Crystal Structure Of Tyrosyl-Trna Synthetase Comple 5e-07
3a04_A372 Crystal Structure Of Tryptophanyl-Trna Synthetase F 4e-06
1j1u_A306 Crystal Structure Of Archaeal Tyrosyl-Trna Syntheta 4e-06
3n2y_A314 Crystal Structure Of Tyrosyl-Trna Synthetase Comple 4e-05
2ag6_A314 Crystal Structure Of P-Bromo-L-Phenylalanine-Trna S 8e-05
1zh0_A314 Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Sy 1e-04
1u7x_A312 Crystal Structure Of A Mutant M. Jannashii Tyrosyl- 2e-04
1zh6_A314 Crystal Structure Of P-Acetylphenylalanine-Trna Syn 2e-04
3qe4_A312 An Evolved Aminoacyl-Trna Synthetase With Atypical 7e-04
3d6u_A314 Crystal Structure Of 4-(Trifluoromethyldiazirinyl) 8e-04
2hgz_A306 Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trn 9e-04
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Yersinia Pestis Co92 Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/247 (49%), Positives = 158/247 (63%), Gaps = 14/247 (5%)
Query: 64  LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
           +SEP      + S K  + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1   MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
              D   L K T +T A+YLACGID  K+++FVQSHV  H +L W L+  T  G L++M 
Sbjct: 61  ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXX 243
           QFK+KS +   EN+   L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N  
Sbjct: 121 QFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 244 XXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKD 302
                          IFK+PEP IP AGARVMSL D   KMSKS  +  + I LL DPK 
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227
Query: 303 VSHKFFR 309
           V  K  R
Sbjct: 228 VVKKIKR 234
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B. Subtilis Length = 388 Back     alignment and structure
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-Trna Synthetase Complexed With Tryptophanyl-5'amp Length = 328 Back     alignment and structure
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna Synthetase: Domain Movements Fragment The Adenine Nucleotide Binding Site. Length = 326 Back     alignment and structure
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-Trna Synthetase Complexed With Tryptophanyl-5'amp Length = 328 Back     alignment and structure
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus Tryptophanyl-Trna Synthetase Complexed With Tryptophan, Amp, And Inorganic Phosphate Length = 326 Back     alignment and structure
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Vibrio Cholerae With An Endogenous Tryptophan Length = 341 Back     alignment and structure
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Thermus Thermophilus Length = 337 Back     alignment and structure
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Mycoplasma Pneumoniae Length = 348 Back     alignment and structure
>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29, Northeast Structural Genomics Consortium Target Or52 Length = 338 Back     alignment and structure
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From Thermotoga Maritima At 2.50 A Resolution Length = 340 Back     alignment and structure
>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Length = 322 Back     alignment and structure
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp Length = 331 Back     alignment and structure
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From Deinococcus Radiodurans In Complex With L-Trp Length = 351 Back     alignment and structure
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With L-Tyrosine From Archaeoglobus Fulgidus Length = 323 Back     alignment and structure
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Length = 372 Back     alignment and structure
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase Complexed With Trna(Tyr) And L-Tyrosine Length = 306 Back     alignment and structure
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With P-(2- Tetrazolyl)-Phenylalanine Length = 314 Back     alignment and structure
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna Sythetase In Complex With P-Bromo-L-Phenylalanine Length = 314 Back     alignment and structure
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna Synthetase In Complex With L-3-(2-Napthyl)alanine Length = 314 Back     alignment and structure
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna Synthetase Specific For O-Methyl-Tyrosine Length = 312 Back     alignment and structure
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase In Complex With P-Acetylphenylalanine Length = 314 Back     alignment and structure
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical Polysubstrate Specificity Length = 312 Back     alignment and structure
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl) Phenylalanyl-Trna Synthetase Length = 314 Back     alignment and structure
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna Synthetase Length = 306 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
3n9i_A 346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 1e-148
3sz3_A 341 Tryptophanyl-tRNA synthetase; structural genomics, 1e-146
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 1e-144
3prh_A 388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 1e-144
2yy5_A 348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 1e-144
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 1e-134
2el7_A 337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 1e-131
1yi8_B 351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 1e-120
2g36_A 340 Tryptophanyl-tRNA synthetase; TM0492, structural g 1e-113
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 8e-81
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 5e-54
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 1e-78
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 2e-73
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 3e-73
3jxe_A 392 Tryptophanyl-tRNA synthetase; adenosine triphospha 1e-57
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 1e-39
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 2e-39
2ip1_A 432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 2e-36
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 4e-36
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 6e-36
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 5e-34
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 1e-31
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 3e-20
2dlc_X 394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 2e-16
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 1e-10
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 3e-10
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 4e-10
1n3l_A 372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 1e-08
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346 Back     alignment and structure
 Score =  418 bits (1078), Expect = e-148
 Identities = 122/250 (48%), Positives = 161/250 (64%), Gaps = 13/250 (5%)

Query: 64  LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
           +SEP      + S K  + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1   MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60

Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
              D   L K T +T A+YLACGID  K+++FVQSHV  H +L W L+  T  G L++M 
Sbjct: 61  ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120

Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 243
           QFK+KS +   EN+   L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 121 QFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179

Query: 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 303
           YG             IFK+PEP IP AGARVMSL D   KMSKS  +  + I LL+    
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227

Query: 304 SHKFFRRFLT 313
             K  +R +T
Sbjct: 228 VVKKIKRAMT 237
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Length = 341 Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Length = 328 Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Length = 388 Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Length = 348 Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} PDB: 3m5w_A* Length = 322 Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Length = 337 Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351 Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Length = 340 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Length = 375 Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Length = 348 Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Length = 373 Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392 Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437 Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477 Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432 Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393 Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395 Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386 Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406 Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451 Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394 Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364 Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323 Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Length = 314 Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
3prh_A 388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 100.0
3n9i_A 346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 100.0
3sz3_A 341 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
2yy5_A 348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 100.0
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 100.0
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
1yi8_B 351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 100.0
2el7_A 337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 100.0
2g36_A 340 Tryptophanyl-tRNA synthetase; TM0492, structural g 100.0
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 100.0
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 100.0
3jxe_A 392 Tryptophanyl-tRNA synthetase; adenosine triphospha 100.0
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 100.0
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 100.0
3a04_A372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 100.0
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 100.0
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 100.0
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
1n3l_A 372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 100.0
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
2dlc_X 394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 100.0
2ip1_A 432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 100.0
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 100.0
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 100.0
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
2jan_A 432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 100.0
1h3f_A 432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 100.0
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
1jil_A 420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 100.0
2ts1_A 419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 100.0
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 100.0
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 99.32
2ja2_A 498 Glutamyl-tRNA synthetase; non-discriminating gluta 99.2
1j09_A 468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 99.2
3afh_A 488 Glutamyl-tRNA synthetase 2; protein-substrate comp 99.17
3al0_C 592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 99.03
2cfo_A 492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 99.03
2o5r_A 481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 98.5
4g6z_A 490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 98.42
3aii_A 553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 98.33
4gri_A 512 Glutamate--tRNA ligase; structural genomics, seatt 98.24
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 98.12
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 97.87
2csx_A 497 Methionyl-tRNA synthetase; ligase, riken structura 97.54
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 97.51
1iq0_A 592 Arginyl-tRNA synthetase; riken structural genomics 97.08
3tqo_A 462 Cysteinyl-tRNA synthetase; protein synthesis, liga 96.59
3fnr_A 464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 96.39
2zue_A 629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 96.38
1f7u_A 607 Arginyl-tRNA synthetase; RNA-protein complex, amin 95.67
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 95.38
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 94.48
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 94.36
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 94.18
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 93.61
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 92.74
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 90.22
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 88.72
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 88.27
1li5_A 461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 87.45
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 86.98
3c8z_A 414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 86.89
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 85.83
1wkb_A 810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 84.93
3sp1_A 501 Cysteinyl-tRNA synthetase; structural genomics, se 84.49
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 82.93
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 82.32
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 82.27
1li5_A 461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 82.0
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 81.88
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 81.6
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Back     alignment and structure
Probab=100.00  E-value=2.7e-71  Score=543.07  Aligned_cols=226  Identities=52%  Similarity=0.798  Sum_probs=206.8

Q ss_pred             ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 020943           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (319)
Q Consensus        79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QS  158 (319)
                      .+||||++|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+||
T Consensus        36 ~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS  115 (388)
T 3prh_A           36 QTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQS  115 (388)
T ss_dssp             CEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred             CeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecc
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHH
Q 020943          159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE  238 (319)
Q Consensus       159 d~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdia~  238 (319)
                      +|++|.+++|+|+|.+++++|+|+.+||++.+..  +++++|+|+||+|||||||+|++|+||||+||+||+|||||+|+
T Consensus       116 ~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~  193 (388)
T 3prh_A          116 EVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAE  193 (388)
T ss_dssp             GSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999876553  57899999999999999999999999999999999999999999


Q ss_pred             HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCCC
Q 020943          239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMNL  318 (319)
Q Consensus       239 r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~~  318 (319)
                      |||+.||.            +|.+|++++++.+++||||+||.+|||||+|+++|+|+|+|+|++|++|||+|+||+.+.
T Consensus       194 rfn~~y~~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~~~  261 (388)
T 3prh_A          194 RFNKKYND------------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEGI  261 (388)
T ss_dssp             HHHHHTCS------------CCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSSCC
T ss_pred             HhCcccCC------------CcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCCCc
Confidence            99999974            488999999876689999988889999999987899999999999999999999998653
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 319
d1i6la_326 c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) 2e-61
d1r6ta2386 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase ( 2e-37
d1n3la_339 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Hum 5e-34
d1h3fa1343 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) 4e-19
d1j1ua_306 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Arc 3e-18
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Length = 326 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  196 bits (498), Expect = 2e-61
 Identities = 113/232 (48%), Positives = 146/232 (62%), Gaps = 14/232 (6%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
           K I SG+QP+G I +GNY+GA++ ++ LQ+ Y   F IVD HAIT+  D  +L +  R  
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61

Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
           AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS      + G
Sbjct: 62  AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAG 121

Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
             LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N             R G 
Sbjct: 122 --LLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNK------------RYGE 167

Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRR 310
           +F +PE  IP  GAR+MSL D   KMSKS P+ ++ I LLD      K  + 
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS 219
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Length = 343 Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 306 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
d1i6la_326 Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste 100.0
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 100.0
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 100.0
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 100.0
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 100.0
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 99.98
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 99.96
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 98.77
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 98.64
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 98.25
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 95.66
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 95.09
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 94.54
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 94.51
d1ivsa4 425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 93.08
d1h3na3 494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 90.97
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 89.72
d1ffya3 450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 89.53
d1rqga2 361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 89.42
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 87.37
d1ilea3 452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 86.46
d1ilea3452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 86.08
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 83.9
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 81.09
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.8e-67  Score=499.61  Aligned_cols=226  Identities=51%  Similarity=0.781  Sum_probs=211.6

Q ss_pred             ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 020943           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS  158 (319)
Q Consensus        79 ~~i~tGi~PTG~lHLGnylg~i~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QS  158 (319)
                      .+||||++|||.+|||||+|++++|++||++++++|+||||||+|+..+++++++++++++++|+|||+||+++.||+||
T Consensus         2 ~~v~tG~~PSG~~HlG~~~g~i~~~~~lq~~~~~~i~iAD~halt~~~~~~~l~~~~~~~~~~~lA~G~dp~k~~i~~qS   81 (326)
T d1i6la_           2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS   81 (326)
T ss_dssp             CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEGG
T ss_pred             CeeEeCcCCCCccHHHHHHHHHHHHHHHhCCCCEEEEeehHHhhccCCCHHHHHHHHHHHHHHhhhhhccccceEEEeec
Confidence            48999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHhccCCHHHHhchhchHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHH
Q 020943          159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE  238 (319)
Q Consensus       159 d~~~~~el~w~L~~~~s~~~L~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adlvpvG~DQ~~hleLaRdia~  238 (319)
                      ++++|.+++|+|++.+++++++|+.+||++.+.  .+++++|+|+||+|||||||+|++|+||||+||+||+|||||+|+
T Consensus        82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~--~~~~~~g~l~YP~lQaADIl~~~~d~vpvG~DQ~~h~eltRdia~  159 (326)
T d1i6la_          82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG--KEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE  159 (326)
T ss_dssp             GCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHTT--CSSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhhhhhhhhhhcccchhhccc--cccCCccccccccccchhHHhcCccccccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999987654  367899999999999999999999999999999999999999999


Q ss_pred             HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCCC
Q 020943          239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMNL  318 (319)
Q Consensus       239 r~n~~~g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~gL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~~  318 (319)
                      |||+.||..            |..|...+...+++++++.||.+|||||+++++++|+|+|+|++|++||++|+||+...
T Consensus       160 r~n~~~~~~------------~~~~~~~i~~~~~~~~~~~d~~~kmskS~~~~~~~I~l~D~~~~i~kKI~~a~td~~~~  227 (326)
T d1i6la_         160 RFNKRYGEL------------FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT  227 (326)
T ss_dssp             HHHHHHCSC------------CCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred             HhhhccCCc------------ccccccccccccceeeecCCccccccccCCCccceeeccCCHHHHHHHHHhhhccccCC
Confidence            999999853            66777766555578888889999999999988889999999999999999999998754
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure