Query 020944
Match_columns 319
No_of_seqs 272 out of 1357
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:23:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 9.6E-53 2.1E-57 393.3 30.1 247 55-318 64-331 (365)
2 KOG0697 Protein phosphatase 1B 100.0 9.9E-53 2.1E-57 363.7 21.1 248 51-318 17-292 (379)
3 KOG0698 Serine/threonine prote 100.0 1.9E-49 4.2E-54 368.8 29.0 246 57-318 41-305 (330)
4 PTZ00224 protein phosphatase 2 100.0 1.1E-48 2.5E-53 367.0 30.4 236 53-318 19-272 (381)
5 PF00481 PP2C: Protein phospha 100.0 5.8E-50 1.3E-54 360.6 17.0 236 57-309 1-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 1.7E-44 3.7E-49 325.4 21.0 231 52-318 4-253 (262)
7 KOG0699 Serine/threonine prote 100.0 9E-45 2E-49 324.2 17.3 163 142-319 330-505 (542)
8 cd00143 PP2Cc Serine/threonine 100.0 2.1E-38 4.6E-43 283.7 29.4 235 57-316 2-254 (254)
9 PRK14559 putative protein seri 100.0 1.8E-39 3.9E-44 320.6 24.2 238 54-318 373-636 (645)
10 smart00332 PP2Cc Serine/threon 100.0 3.6E-38 7.7E-43 282.9 29.5 234 55-314 5-255 (255)
11 KOG0700 Protein phosphatase 2C 100.0 5.9E-39 1.3E-43 293.4 19.5 206 87-301 96-376 (390)
12 KOG1323 Serine/threonine phosp 100.0 8.4E-31 1.8E-35 232.6 20.2 214 87-317 141-487 (493)
13 KOG1379 Serine/threonine prote 99.9 8.2E-23 1.8E-27 181.7 20.7 196 68-315 89-329 (330)
14 KOG0618 Serine/threonine phosp 99.9 2.6E-22 5.7E-27 199.2 14.0 237 52-318 518-773 (1081)
15 PF13672 PP2C_2: Protein phosp 99.8 5.8E-20 1.3E-24 160.7 12.3 171 61-283 3-196 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 5.2E-17 1.1E-21 140.0 19.2 169 68-300 15-192 (193)
17 TIGR02865 spore_II_E stage II 99.6 1.1E-14 2.4E-19 149.0 20.1 199 53-316 549-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.5 1.1E-11 2.3E-16 106.5 20.3 172 90-317 4-193 (193)
19 COG2208 RsbU Serine phosphatas 98.3 9.7E-05 2.1E-09 70.1 18.8 170 90-317 175-366 (367)
20 COG3700 AphA Acid phosphatase 61.1 15 0.00032 31.3 4.2 46 255-300 71-127 (237)
21 PF09436 DUF2016: Domain of un 46.4 13 0.00028 26.6 1.4 21 251-271 23-43 (72)
22 PF14014 DUF4230: Protein of u 31.3 2E+02 0.0044 23.1 6.7 42 241-282 75-116 (157)
23 TIGR00525 folB dihydroneopteri 29.0 2.4E+02 0.0053 21.6 6.5 56 261-316 42-99 (116)
24 PF05402 PqqD: Coenzyme PQQ sy 27.4 1.5E+02 0.0032 20.1 4.5 27 270-296 14-40 (68)
25 PF02152 FolB: Dihydroneopteri 26.9 2.3E+02 0.005 21.4 6.0 54 262-315 41-96 (113)
26 cd00534 DHNA_DHNTPE Dihydroneo 26.9 2.2E+02 0.0047 21.9 5.8 54 261-314 43-98 (118)
27 TIGR03859 PQQ_PqqD coenzyme PQ 22.3 1.8E+02 0.0038 21.0 4.2 40 255-297 16-55 (81)
28 PF07228 SpoIIE: Stage II spor 21.4 4.6E+02 0.0099 21.4 7.4 65 254-318 2-71 (193)
29 PF06972 DUF1296: Protein of u 20.7 1.8E+02 0.004 19.9 3.6 26 269-297 19-44 (60)
30 PF05785 CNF1: Rho-activating 20.3 1.1E+02 0.0024 27.9 3.2 26 138-164 128-153 (281)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=9.6e-53 Score=393.26 Aligned_cols=247 Identities=36% Similarity=0.632 Sum_probs=210.7
Q ss_pred eeeEEEeeccCCCCCCCceEEEeccCCCC----CCCCCceeEEEEEcCCChhHHHHHHHHHHHHHHHHcc----------
Q 020944 55 EIEADAAEDKGSRHTMEDASVVLVDASSD----SPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAG---------- 120 (319)
Q Consensus 55 ~~~~g~~s~~G~R~~nED~~~~~~~~~~~----~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~---------- 120 (319)
.+.+|.+|++|.|+.|||++++..++... .+......||||||||||+.+|++|++++++.|.+..
T Consensus 64 ~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~al 143 (365)
T PLN03145 64 VVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKVV 143 (365)
T ss_pred ceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 45789999999999999999876543111 1122345799999999999999999999999886532
Q ss_pred CchhHhhhHHHHHhhhc-CCCCCCCeEEEEEEeCCeEEEEeeCCceEEEEeecccCCCCCCccccCceeEEecCCCCCCC
Q 020944 121 LPRFRKTDESLLQESVS-GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAI 199 (319)
Q Consensus 121 ~~~~~~~~~~l~~~~~~-~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~dH~~~ 199 (319)
...|..+++.+.+.... ....+|||++++++.++++|+|||||||+|+++.+ ++++||+||++.
T Consensus 144 ~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g---------------~~~~LT~DH~~~ 208 (365)
T PLN03145 144 SSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRG---------------KAIEMSRDHKPM 208 (365)
T ss_pred HHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCC---------------eEEEecCCCCCC
Confidence 11266777776654332 23458999999999999999999999999999998 999999999999
Q ss_pred ChHHHHHHHHhCCEEeeCCeecCeeeccccccCccCCcC------CeeeeCeeEEEEecCCCeEEEEEcCCCccccCHHH
Q 020944 200 YPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF------GVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD 273 (319)
Q Consensus 200 ~~~E~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~------~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d~ls~~e 273 (319)
++.|+.||.+.||.+. .++++|.+++||+|||..+|.. +++++|++..+++.++|.|||||||||||+|++++
T Consensus 209 ~~~E~~RI~~~Gg~v~-~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee 287 (365)
T PLN03145 209 CSKERKRIEASGGYVY-DGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQN 287 (365)
T ss_pred CHHHHHHHHHcCCcee-cceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHH
Confidence 9999999999999986 5789999999999999888643 47899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020944 274 AVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 318 (319)
Q Consensus 274 i~~ii~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 318 (319)
+++++...+....+|+++|+.|++.|+ .+++.||||||||+|++
T Consensus 288 ~v~~i~~~l~~~~~p~~aa~~Lv~~Al-~rgs~DNITvIVV~l~~ 331 (365)
T PLN03145 288 AVDFARRRLQEHNDPVMCSKELVDEAL-KRKSGDNLAVVVVCFQS 331 (365)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH-hCCCCCCEEEEEEEeec
Confidence 999998877666689999999999998 69999999999999974
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-53 Score=363.69 Aligned_cols=248 Identities=31% Similarity=0.536 Sum_probs=219.3
Q ss_pred cccceeeEEEeeccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEcCCChhHHHHHHHHHHHHHHHHccCc--------
Q 020944 51 IDFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP-------- 122 (319)
Q Consensus 51 ~~~~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~~~-------- 122 (319)
...-.+.+|.+|++|||-.|||++.....++. +-.+|.||+|||||.|+.+|.+|+++|.+.+.+...-
T Consensus 17 G~GNglryg~SSMQGWR~eMEDah~A~~~l~~---~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gs 93 (379)
T KOG0697|consen 17 GEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPS---PLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGS 93 (379)
T ss_pred CcCCceeeeeccccchhhhhhhhhhhhhcCCC---CccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCc
Confidence 34457889999999999999999998776654 3457899999999999999999999999988653211
Q ss_pred ----------hhHhhhHHHHHhh--hcCCCCCCCeEEEEEEeCCeEEEEeeCCceEEEEeecccCCCCCCccccCceeEE
Q 020944 123 ----------RFRKTDESLLQES--VSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAI 190 (319)
Q Consensus 123 ----------~~~~~~~~l~~~~--~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~ 190 (319)
.|..+++.+.... ..+..++||||+++++...++|++|+||||++++|++ .++
T Consensus 94 v~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng---------------~~~ 158 (379)
T KOG0697|consen 94 VENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNG---------------EVV 158 (379)
T ss_pred HHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCC---------------ceE
Confidence 1777777665433 3344679999999999999999999999999999999 999
Q ss_pred ecCCCCCCCChHHHHHHHHhCCEEeeCCeecCeeeccccccCccCCcC--------CeeeeCeeEEEEecCCCeEEEEEc
Q 020944 191 VVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGC 262 (319)
Q Consensus 191 ~LT~dH~~~~~~E~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~--------~v~~~Pdi~~~~l~~~d~~lvL~S 262 (319)
.-|.||+|.+|.|++||+.+||.+. -.|++|.|+++|||||+.+|.. -|+++|+|+...-...|+||||||
T Consensus 159 f~TqDHKP~~p~EkeRIqnAGGSVM-IqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlAC 237 (379)
T KOG0697|consen 159 FSTQDHKPYLPKEKERIQNAGGSVM-IQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLAC 237 (379)
T ss_pred EeccCCCCCChHHHHHHhcCCCeEE-EEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEc
Confidence 9999999999999999999999997 5699999999999999999963 388999999999888888999999
Q ss_pred CCCccccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020944 263 DGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 318 (319)
Q Consensus 263 DGl~d~ls~~ei~~ii~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 318 (319)
||+||+|+++|+++++++.+.-..++..+|..+++.++ ..|+.||+|+|+|.|+.
T Consensus 238 DGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCL-hKGSRDNMsivlvcfp~ 292 (379)
T KOG0697|consen 238 DGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCL-HKGSRDNMSIVLVCFPG 292 (379)
T ss_pred cchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHH-hccCccCceEEEEecCC
Confidence 99999999999999999998877889999999999998 69999999999999973
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-49 Score=368.82 Aligned_cols=246 Identities=38% Similarity=0.579 Sum_probs=211.4
Q ss_pred eEEEeeccCCCCCCCceEEEeccCCCCCCCCC-ceeEEEEEcCCChhHHHHHHHHHHHHHHHHccC-------------c
Q 020944 57 EADAAEDKGSRHTMEDASVVLVDASSDSPPNL-RCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL-------------P 122 (319)
Q Consensus 57 ~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~-~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~~-------------~ 122 (319)
..+.++.+|+|+.|||++.............. ..++|||||||||+.+|+|+.++|+..+.++.. .
T Consensus 41 ~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~ 120 (330)
T KOG0698|consen 41 LGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRR 120 (330)
T ss_pred ceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Confidence 35566999999999999998776543222333 689999999999999999999999999876432 1
Q ss_pred hhH-hhhHHHHHhhhcCCCCCCCeEEEEEEeCC-eEEEEeeCCceEEEEeecccCCCCCCccccCceeEEecCCCCCCCC
Q 020944 123 RFR-KTDESLLQESVSGGWQDGATAVCIWILGR-TVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIY 200 (319)
Q Consensus 123 ~~~-~~~~~l~~~~~~~~~~~GtT~~~~~i~~~-~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~dH~~~~ 200 (319)
.|. .++..+... ......+|||++++++..+ +|||||+|||||+|++.+ | .+++||.||+|..
T Consensus 121 ~F~~~~D~~~~~~-~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~---~-----------~a~~Ls~DHkP~~ 185 (330)
T KOG0698|consen 121 AFLTKTDSEFLEK-REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKG---G-----------VAVQLSVDHKPDR 185 (330)
T ss_pred HHHHHHHHHHHhh-ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCC---C-----------eeeeCCCCCCCCc
Confidence 277 588877765 2224677899998888855 999999999999999875 2 7999999999999
Q ss_pred hHHHHHHHHhCCEEeeC---CeecCeeeccccccCccCCcCCeeeeCeeEEEEecCCCeEEEEEcCCCccccCHHHHHHH
Q 020944 201 PQERARIQKSGGTVSSN---GRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEF 277 (319)
Q Consensus 201 ~~E~~ri~~~gg~v~~~---~r~~g~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d~ls~~ei~~i 277 (319)
+.|+.||.++||++... .|++|.|++||+|||..+|.++++++|++....+...|+||||+||||||+|+++|++++
T Consensus 186 ~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~ 265 (330)
T KOG0698|consen 186 EDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDL 265 (330)
T ss_pred HHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHH
Confidence 99999999999999864 499999999999999999977799999999999999899999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020944 278 VQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 318 (319)
Q Consensus 278 i~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 318 (319)
++..+.....+..++..|...|+ .+++.||||||||.|.+
T Consensus 266 V~~~~~~~~~~~~a~~~l~~~a~-~~~s~DnitvvvV~l~~ 305 (330)
T KOG0698|consen 266 VRDELASISSPLAAAKLLATEAL-SRGSKDNITVVVVRLKS 305 (330)
T ss_pred HHHHhhccccHHHHHHHHHHHHh-hcCCCCCeEEEEEEecC
Confidence 99976444578889999999997 79999999999999975
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.1e-48 Score=366.98 Aligned_cols=236 Identities=31% Similarity=0.519 Sum_probs=201.0
Q ss_pred cceeeEEEeeccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEcCCChhHHHHHHHHHHHHHHHHccC--------chh
Q 020944 53 FVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL--------PRF 124 (319)
Q Consensus 53 ~~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~~--------~~~ 124 (319)
...+.+|+.+++|+|++|||++++... ..+.+|+|||||||..+|+++++.|...+..... ..|
T Consensus 19 ~~~~~~g~~s~~G~R~~nED~~~v~~~--------~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~~~~~~l~~a~ 90 (381)
T PTZ00224 19 NSIFRCASACVNGYRESMEDAHLLYLT--------DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEPMTDERMEELC 90 (381)
T ss_pred CccEEEEEEeCCCCCCCCCCeeEeccC--------CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 356789999999999999999887432 1346899999999999999999999987754321 125
Q ss_pred HhhhHHHHHhhhcCCCCCCCeEEEEEEe-CCeEEEEeeCCceEEEEeecccCCCCCCccccCceeEEecCCCCCCCChHH
Q 020944 125 RKTDESLLQESVSGGWQDGATAVCIWIL-GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQE 203 (319)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~GtT~~~~~i~-~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~dH~~~~~~E 203 (319)
..+|+.+.+.. ..+|||++++++. +.++|||||||||+|++|++ ++++||+||++.++.|
T Consensus 91 ~~~d~~i~~~~----~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g---------------~~~~LT~DH~~~~~~E 151 (381)
T PTZ00224 91 LEIDEEWMDSG----REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDG---------------KLVFATEDHKPNNPGE 151 (381)
T ss_pred HHHHHHHHhcc----cCCCCeEEEEEEEECCEEEEEEcccceEEEEECC---------------EEEEcccCCCCCCHHH
Confidence 56666665432 3469999988876 57999999999999999998 9999999999999999
Q ss_pred HHHHHHhCCEEeeCCeecCeeeccccccCccCCcC--------CeeeeCeeEEEEecCCCeEEEEEcCCCcc-ccCHHHH
Q 020944 204 RARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGLWG-VFGPSDA 274 (319)
Q Consensus 204 ~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~--------~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d-~ls~~ei 274 (319)
+.||.+.||.+. .+|++|.+++||+|||..+|.. .++++|++..+.+.++| ||||||||||| +++++|+
T Consensus 152 ~~RI~~~gg~v~-~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eEi 229 (381)
T PTZ00224 152 RQRIEACGGRVV-SNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEEV 229 (381)
T ss_pred HhHHHHccCEec-cccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHHH
Confidence 999999999997 4699999999999999876643 36789999999998776 99999999999 8999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020944 275 VEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 318 (319)
Q Consensus 275 ~~ii~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 318 (319)
.+++...+....+++.+|+.|++.|+ .+|+.||||||||+|..
T Consensus 230 ~~iv~~~l~~~~~~~~aA~~Lv~~A~-~rGs~DNITvIvV~~~~ 272 (381)
T PTZ00224 230 VAFVKEQLETCDDLAVVAGRVCDEAI-RRGSKDNISCLIVQLKD 272 (381)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH-hcCCCCCEEEEEEEeeC
Confidence 99998766555678999999999998 69999999999999864
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=5.8e-50 Score=360.63 Aligned_cols=236 Identities=40% Similarity=0.633 Sum_probs=195.8
Q ss_pred eEEEeeccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEcCCChhHHHHHHHHHHHHHHHHccC------------chh
Q 020944 57 EADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL------------PRF 124 (319)
Q Consensus 57 ~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~~------------~~~ 124 (319)
.+|+.+.+|+|..|||++++..+.... ....+..+|+|||||||+.++++++..++..+.+... ..|
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~-~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSN-SGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCC-TTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCcccc-CCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 478999999999999999998754322 3455788999999999999999999999976655321 115
Q ss_pred Hh-hhHHHHHhhhc-CCCCCCCeEEEEEEeCCeEEEEeeCCceEEEEeecccCCCCCCccccCceeEE-ecCCCCCCCCh
Q 020944 125 RK-TDESLLQESVS-GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAI-VVTRVHKAIYP 201 (319)
Q Consensus 125 ~~-~~~~l~~~~~~-~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~-~LT~dH~~~~~ 201 (319)
.. +++.+...... ....+|||++++++.++++|+|||||||+|+++.+ ... +||+||+|.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~---------------~~~~~Lt~dH~~~~~ 144 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNG---------------GIIKQLTRDHKPSNP 144 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETT---------------EEEEESS---STTSH
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeecc---------------ccccccccccccchh
Confidence 66 66666552221 45788999999999999999999999999999999 777 99999999999
Q ss_pred HHHHHHHHhCCEEeeCCeecCeeeccccccCccCCc---CCeeeeCeeEEEEecCCCeEEEEEcCCCccccCHHHHHHHH
Q 020944 202 QERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKK---FGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFV 278 (319)
Q Consensus 202 ~E~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~---~~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d~ls~~ei~~ii 278 (319)
.|+.||.++||.+...+|+.|.+++||+|||..+|+ ++++++|+|..+++.++|.|||||||||||+|+++|+++++
T Consensus 145 ~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v 224 (254)
T PF00481_consen 145 DERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIV 224 (254)
T ss_dssp HHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHH
T ss_pred hccceeeccccccccchhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHH
Confidence 999999999999988889999999999999999998 78999999999999999889999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCCc
Q 020944 279 QKLLKEGLSVTAVSRRLVREAVLERRCKDNC 309 (319)
Q Consensus 279 ~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNi 309 (319)
......+..|+.+|+.|++.|+ ++|+.|||
T Consensus 225 ~~~~~~~~~~~~~a~~L~~~A~-~~gs~DNi 254 (254)
T PF00481_consen 225 RESLNSGRSPQEAAEKLVDEAI-ARGSKDNI 254 (254)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHH-HTTHHSHE
T ss_pred HHHHhcCCcHHHHHHHHHHHHH-hcCCCCCC
Confidence 9988755568999999999998 79999997
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-44 Score=325.43 Aligned_cols=231 Identities=27% Similarity=0.403 Sum_probs=191.6
Q ss_pred ccceeeEEEeeccCC-CCCCCceEEEeccCCCCCCCCCceeEEEEEcCCChhHHHHHHHHHHHHHHHHccCch-------
Q 020944 52 DFVEIEADAAEDKGS-RHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPR------- 123 (319)
Q Consensus 52 ~~~~~~~g~~s~~G~-R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~~~~------- 123 (319)
..+.+.++..|+.|. |..|||++++..+. .+.. ..||+||||||||.++++|++.+++.|.+.+...
T Consensus 4 ~~~~~~~~~~s~~g~~R~~NeD~~~~~~~~----~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~ 78 (262)
T COG0631 4 GILSLKVAGLSDVGTVRKHNEDAFLIKPNE----NGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNE 78 (262)
T ss_pred ccceeeeeeeccCCCccCCCCcceeecccc----CCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccch
Confidence 346677888888885 88899999997522 2333 5799999999999999999999998887653221
Q ss_pred ---------hHhhhHHHHHhhh--cCCCCCCCeEEEEEEeCCeEEEEeeCCceEEEEeecccCCCCCCccccCceeEEec
Q 020944 124 ---------FRKTDESLLQESV--SGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVV 192 (319)
Q Consensus 124 ---------~~~~~~~l~~~~~--~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~L 192 (319)
+..+++.+..... .....+|||++++++.++++|+|||||||+|++|++ .+++|
T Consensus 79 ~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~---------------~~~~l 143 (262)
T COG0631 79 SLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDG---------------ELKQL 143 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCC---------------ceEEe
Confidence 5556666665543 344678999999999999999999999999999999 99999
Q ss_pred CCCCCCCChHHHHHHHHhCCEEeeCCeecCeeeccccccCccCCcCCeeeeCeeEEEEecCCCeEEEEEcCCCccccCHH
Q 020944 193 TRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPS 272 (319)
Q Consensus 193 T~dH~~~~~~E~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d~ls~~ 272 (319)
|+||++.++.++.++...++..... | ..++|||||+... ..|++....+.+++ |||||||||||.++++
T Consensus 144 T~DH~~~~~~~~~~~~~~~~~~~~~-~---~~~ltralG~~~~------~~p~~~~~~~~~~d-~llL~SDGl~d~v~~~ 212 (262)
T COG0631 144 TEDHSLVNRLEQRGIITPEEARSHP-R---RNALTRALGDFDL------LEPDITELELEPGD-FLLLCSDGLWDVVSDD 212 (262)
T ss_pred ccCCcHHHHHHHhcCCCHHHHHhCc-c---chhhhhhcCCCcc------cceeEEEEEcCCCC-EEEEECCCCccCcCHH
Confidence 9999999999988876665544432 2 2389999998765 58999999999885 9999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020944 273 DAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 318 (319)
Q Consensus 273 ei~~ii~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 318 (319)
++.+++.. ..++++++++|++.|+ .+++.||+|+++|++..
T Consensus 213 ~i~~il~~----~~~~~~~~~~li~~a~-~~g~~DNiT~ilv~~~~ 253 (262)
T COG0631 213 EIVDILKN----SETPQEAADKLIELAL-EGGGPDNITVVLVRLNG 253 (262)
T ss_pred HHHHHHhc----CCCHHHHHHHHHHHHH-hcCCCCceEEEEEEeec
Confidence 99999975 3479999999999998 69999999999999763
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=9e-45 Score=324.24 Aligned_cols=163 Identities=36% Similarity=0.630 Sum_probs=152.7
Q ss_pred CCCeEEEEEEeCCeEEEEeeCCceEEEEeecccCCCCCCccccCceeEEecCCCCCCCChHHHHHHHHhCCEEeeCCeec
Q 020944 142 DGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQ 221 (319)
Q Consensus 142 ~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~dH~~~~~~E~~ri~~~gg~v~~~~r~~ 221 (319)
+|||++++++.+++|||||.||||++++|.| +++-++.||+|..+.|..||.++||.|.-++|++
T Consensus 330 SGtTAvVcLv~g~~liVANAGDSRcV~sr~G---------------kAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVN 394 (542)
T KOG0699|consen 330 SGTTAVVCLVGGDKLIVANAGDSRCVLSRNG---------------KAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVN 394 (542)
T ss_pred CCceEEEEEecCceEEEecCCCcceEEecCC---------------ceeecccCCCcccHHHHHHHHhcCCeEeecceec
Confidence 5999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CeeeccccccCccCCcC--------CeeeeCeeEEEEecCCCeEEEEEcCCCccccCHHHHHHHHHHHHHcCCCHHHHHH
Q 020944 222 GRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSR 293 (319)
Q Consensus 222 g~l~~tRalGd~~~k~~--------~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d~ls~~ei~~ii~~~~~~~~~~~~~a~ 293 (319)
|.|.++|||||+.||.. .+++-|+|....|++.|+|+||+|||||++|+.++++++|+..+........+|+
T Consensus 395 GGLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~ice 474 (542)
T KOG0699|consen 395 GGLNLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICE 474 (542)
T ss_pred CccchhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999962 4788999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHh-----CCCCCCcEEEEEEecCC
Q 020944 294 RLVREAVLE-----RRCKDNCTAIVIIFRHK 319 (319)
Q Consensus 294 ~L~~~A~~~-----~g~~DNiTvivv~l~~~ 319 (319)
.|+..++.- .-..||+|||++.|+.|
T Consensus 475 eL~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 475 ELCDACLAPSTDGDGTGCDNMTVIITTFKRK 505 (542)
T ss_pred HHHHhhcCCCCCCCCcCCCcceEEEEEeccc
Confidence 999999842 22579999999999854
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.1e-38 Score=283.68 Aligned_cols=235 Identities=38% Similarity=0.640 Sum_probs=195.2
Q ss_pred eEEEeeccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEcCCChhHHHHHHHHHHHHHHHHccCch-------------
Q 020944 57 EADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPR------------- 123 (319)
Q Consensus 57 ~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~~~~------------- 123 (319)
.++..+..|.|+.|||++++..... ..++.+|+|||||||+..++++++.+.+.+.+.....
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~-----~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~ 76 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLN-----NEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALR 76 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCC-----CCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 4677888889999999999864321 0245899999999999999999999998876643211
Q ss_pred --hHhhhHHHHHhhhc--CCCCCCCeEEEEEEeCCeEEEEeeCCceEEEEeecccCCCCCCccccCceeEEecCCCCCCC
Q 020944 124 --FRKTDESLLQESVS--GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAI 199 (319)
Q Consensus 124 --~~~~~~~l~~~~~~--~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~dH~~~ 199 (319)
|..+++.+...... ....+|||++++++.+++++++|+||||+|+++++ +++++|.||++.
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~---------------~~~~lt~dh~~~ 141 (254)
T cd00143 77 KAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNG---------------EAVQLTKDHKPV 141 (254)
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCC---------------ceeEcCCCCCCc
Confidence 55556666554432 33568999999999999999999999999999999 999999999999
Q ss_pred ChHHHHHHHHhCCEEeeCCeecCeeeccccccCccCCcCCeeeeCeeEEEEe-cCCCeEEEEEcCCCccccCHHHHHHHH
Q 020944 200 YPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEV-TERDHFIILGCDGLWGVFGPSDAVEFV 278 (319)
Q Consensus 200 ~~~E~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~Pdi~~~~l-~~~d~~lvL~SDGl~d~ls~~ei~~ii 278 (319)
++.++.|+...++... ..+.++...+||+||+..+|. ++..+|++....+ .++| +||||||||||+++++++.+++
T Consensus 142 ~~~~~~~i~~~~~~~~-~~~~~~~~~~t~~lG~~~~~~-~~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~ 218 (254)
T cd00143 142 NEEERERIEKAGGRVS-NGRVPGVLAVTRALGDFDLKP-GVSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIV 218 (254)
T ss_pred ChHHHHHHHHcCCcEE-eCEEcCceeeccccCCccccC-CEEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHH
Confidence 8999999999998764 456667889999999998884 4788999999999 5655 9999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEe
Q 020944 279 QKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIF 316 (319)
Q Consensus 279 ~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l 316 (319)
...... .+++++|+.|++.|. .+++.||+|+||++|
T Consensus 219 ~~~~~~-~~~~~~a~~l~~~a~-~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 219 RSELAK-EDLQEAAQELVDLAL-RRGSHDNITVVVVRL 254 (254)
T ss_pred HHHhcc-cCHHHHHHHHHHHHH-hCCCCCCEEEEEEeC
Confidence 875321 258999999999997 688999999999975
No 9
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=1.8e-39 Score=320.63 Aligned_cols=238 Identities=21% Similarity=0.240 Sum_probs=169.8
Q ss_pred ceeeEEEeeccCC-CCCCCceEEEeccCCC-CCCCC---CceeEEEEEcCCChhHHHHHHHHHHHHHHHHcc--------
Q 020944 54 VEIEADAAEDKGS-RHTMEDASVVLVDASS-DSPPN---LRCAHFAIFDGHGGRLAAEYAQKRLHANVISAG-------- 120 (319)
Q Consensus 54 ~~~~~g~~s~~G~-R~~nED~~~~~~~~~~-~~~~~---~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~-------- 120 (319)
+.+.++.+|++|. |+.|||++++..+... ..+.. ....+|+|||||||+.+++.|++.+++.|.+.+
T Consensus 373 ~~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~ 452 (645)
T PRK14559 373 VSLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDEL 452 (645)
T ss_pred eeEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccc
Confidence 5688999999996 9999999877542110 00111 134689999999988877776666555543311
Q ss_pred ------CchhHhhhHHHHHhhhc----CCCCCCCeEEEEEEeCCeEEEEeeCCceEEEEe-ecccCCCCCCccccCceeE
Q 020944 121 ------LPRFRKTDESLLQESVS----GGWQDGATAVCIWILGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLKA 189 (319)
Q Consensus 121 ------~~~~~~~~~~l~~~~~~----~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r-~~~~~g~~~~~~~~~~~~~ 189 (319)
...|..+|..+.+.... ....+|||++++++.++++|++||||||+|+++ ++ ++
T Consensus 453 ~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g---------------~l 517 (645)
T PRK14559 453 PDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKG---------------GL 517 (645)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCC---------------eE
Confidence 11256667777654322 334689999999999999999999999999985 56 89
Q ss_pred EecCCCCCCCChHHHHHHHHhCCEEeeCCeecCeeeccccccCccCCcCCeeeeCeeEEEEecCCCeEEEEEcCCCccc-
Q 020944 190 IVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGV- 268 (319)
Q Consensus 190 ~~LT~dH~~~~~~E~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d~- 268 (319)
++||+||++.+.. .+.|-.-......++...+|||||+...+. .+|++..+.+.++| +||||||||||+
T Consensus 518 ~QLT~DHs~~~~l-----v~~Gi~~~~a~~~p~~~~LTrALG~~~~~~----l~Pdi~~~~L~~gD-~lLLCSDGL~D~~ 587 (645)
T PRK14559 518 EQLTVDHEVGQRE-----IQRGVEPQIAYARPDAYQLTQALGPRDNSA----IQPDIQFLEIEEDT-LLLLCSDGLSDND 587 (645)
T ss_pred EEeCCCCCHHHHH-----HHhCCCHHHHhcCcccceeeeccCCCCCCc----ccceEEEEEcCCCC-EEEEECCCCCCCc
Confidence 9999999985432 222310000001134678999999865543 38999999998765 999999999994
Q ss_pred -cCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020944 269 -FGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 318 (319)
Q Consensus 269 -ls~~ei~~ii~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 318 (319)
+.. ...+.+...+....+++++|+.|++.|+ .+|+.||||||||+++.
T Consensus 588 ~ve~-~~~~~l~~il~~~~~l~~aa~~Li~~Al-~~gg~DNITvIvV~l~~ 636 (645)
T PRK14559 588 LLET-HWQTHLLPLLSSSANLDQGLNKLIDLAN-QYNGHDNITAILVRLKV 636 (645)
T ss_pred ccch-HHHHHHHHHHhcCCCHHHHHHHHHHHHH-HcCCCCcEEEEEEEecc
Confidence 443 3333333444455578999999999997 69999999999999863
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=3.6e-38 Score=282.94 Aligned_cols=234 Identities=40% Similarity=0.610 Sum_probs=195.2
Q ss_pred eeeEEEeeccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEcCCChhHHHHHHHHHHHHHHHHccC-------------
Q 020944 55 EIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGL------------- 121 (319)
Q Consensus 55 ~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~~------------- 121 (319)
.+.++..+.+|.|..|||++++.... ..+..+|+|||||||+.+|+++++.+.+.+.....
T Consensus 5 ~~~~~~~~~~~~r~~neD~~~~~~~~------~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (255)
T smart00332 5 GLRYGLSSMQGVRKPMEDAHVITPDL------SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEAL 78 (255)
T ss_pred ceeEEEecCCCCCCCCcceEEEeccC------CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHH
Confidence 45677788888999999999986431 13568999999999999999999999988766421
Q ss_pred -chhHhhhHHHHHhhhcC--CCCCCCeEEEEEEeCCeEEEEeeCCceEEEEeecccCCCCCCccccCceeEEecCCCCCC
Q 020944 122 -PRFRKTDESLLQESVSG--GWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKA 198 (319)
Q Consensus 122 -~~~~~~~~~l~~~~~~~--~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~dH~~ 198 (319)
..+..+++.+....... ...+|||++++++..+++|++|+||||+|+++++ ++.+||.||++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~---------------~~~~lt~dh~~ 143 (255)
T smart00332 79 RKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNG---------------KAVQLTEDHKP 143 (255)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCC---------------ceeEcCCCCCC
Confidence 11445555554443322 2467999999999999999999999999999998 89999999999
Q ss_pred CChHHHHHHHHhCCEEeeCCeecCeeeccccccCccCCcCCeeeeCeeEEEEe-cCCCeEEEEEcCCCccccCHHHHHHH
Q 020944 199 IYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEV-TERDHFIILGCDGLWGVFGPSDAVEF 277 (319)
Q Consensus 199 ~~~~E~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~Pdi~~~~l-~~~d~~lvL~SDGl~d~ls~~ei~~i 277 (319)
.++.|..||...++.+. .++.++.+.+||++|+..+|+. +.++|++...++ .++| +||||||||||+++++++.++
T Consensus 144 ~~~~~~~~i~~~~~~~~-~~~~~~~~~lt~~~g~~~~~~~-i~~~p~~~~~~~~~~~d-~ill~SDGv~~~l~~~~i~~~ 220 (255)
T smart00332 144 SNEDERARIEAAGGFVI-NGRVNGVLALSRAIGDFFLKPY-VSAEPDVTVVELTEKDD-FLILASDGLWDVLSNQEVVDI 220 (255)
T ss_pred cCHHHHHHHHHcCCEEE-CCeECCeEecccccCCHhhcCC-eEeeeEEEEEEecCCCc-EEEEECCccccCCCHHHHHHH
Confidence 99999999999999886 4578888999999999888865 899999999997 5555 999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEE
Q 020944 278 VQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVI 314 (319)
Q Consensus 278 i~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv 314 (319)
+...... .++..+|+.|++.|. .++..||+|+|||
T Consensus 221 ~~~~~~~-~~~~~~~~~l~~~a~-~~~~~Dn~T~ivv 255 (255)
T smart00332 221 VRKHLSK-SDPEEAAKRLIDLAL-ARGSKDNITVIVV 255 (255)
T ss_pred HHHHhhc-CCHHHHHHHHHHHHH-HcCCCCCeEEEEC
Confidence 9876532 258999999999997 6899999999985
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-39 Score=293.35 Aligned_cols=206 Identities=30% Similarity=0.399 Sum_probs=169.0
Q ss_pred CCceeEEEEEcCCChhHHHHHHHHHHHHHHHHccCc--------------------------------------------
Q 020944 87 NLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP-------------------------------------------- 122 (319)
Q Consensus 87 ~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~~~-------------------------------------------- 122 (319)
...+.|+||||||||..+++|++++|..++..++..
T Consensus 96 ~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~ 175 (390)
T KOG0700|consen 96 ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSK 175 (390)
T ss_pred cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHH
Confidence 346789999999999999999999999988722111
Q ss_pred hhHhhhHHHHHhhhc------CCCCCCCeEEEEEEeCCeEEEEeeCCceEEEEeecccCCCCCCccccCceeEEecCCCC
Q 020944 123 RFRKTDESLLQESVS------GGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVH 196 (319)
Q Consensus 123 ~~~~~~~~l~~~~~~------~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~dH 196 (319)
.|.++++.+...... .-..+|||+++.++.+..|||||+|||||+|.+..+. +..|.+.|||.||
T Consensus 176 Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~---------~~~~~A~qLS~dH 246 (390)
T KOG0700|consen 176 AFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENN---------GSWLVAVQLSTDH 246 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCC---------CCeEEEEecChhh
Confidence 166777776543211 1134799999999999999999999999999777621 1226999999999
Q ss_pred CCCChHHHHHHHHhCC---E--EeeCCeecCeeeccccccCccCCc--------------------CCeeeeCeeEEEEe
Q 020944 197 KAIYPQERARIQKSGG---T--VSSNGRLQGRLEVSRAFGDRQFKK--------------------FGVVATPDIHSFEV 251 (319)
Q Consensus 197 ~~~~~~E~~ri~~~gg---~--v~~~~r~~g~l~~tRalGd~~~k~--------------------~~v~~~Pdi~~~~l 251 (319)
+..++.|+.||...+. . +...+|+.|.|.+||||||.++|. +.++++|+|++++|
T Consensus 247 n~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL 326 (390)
T KOG0700|consen 247 NASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKL 326 (390)
T ss_pred ccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEc
Confidence 9999999999999885 2 222359999999999999999884 46999999999999
Q ss_pred cCCCeEEEEEcCCCccccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 020944 252 TERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVL 301 (319)
Q Consensus 252 ~~~d~~lvL~SDGl~d~ls~~ei~~ii~~~~~~~~~~~~~a~~L~~~A~~ 301 (319)
.+.|+||||||||||++|+++|+++++..++....+-+.+|+.||+.|+.
T Consensus 327 ~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~ 376 (390)
T KOG0700|consen 327 TPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALG 376 (390)
T ss_pred CCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999775423446789999999874
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=8.4e-31 Score=232.59 Aligned_cols=214 Identities=26% Similarity=0.417 Sum_probs=172.3
Q ss_pred CCceeEEEEEcCCChhHHHHHHHHHHHHHHHHccCch-------------------------------------------
Q 020944 87 NLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPR------------------------------------------- 123 (319)
Q Consensus 87 ~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~~~~------------------------------------------- 123 (319)
..++++|.+||||.|..+|-.|++.+++.+.+.+..-
T Consensus 141 ~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LV 220 (493)
T KOG1323|consen 141 RADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLV 220 (493)
T ss_pred CCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhh
Confidence 3468999999999999999999998888775542100
Q ss_pred -------hHhhhHHHHHhhhcCCCCCCCeEEEEEEeCCeEEEEeeCCceEEEEeecccCCCCCCccccCceeEEecCCCC
Q 020944 124 -------FRKTDESLLQESVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVH 196 (319)
Q Consensus 124 -------~~~~~~~l~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~dH 196 (319)
|..+++++.++.......+|||+++++..-++||+||.|||||+++|++ .+++|+++.
T Consensus 221 iGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrnd---------------eirplS~ef 285 (493)
T KOG1323|consen 221 IGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRND---------------EIRPLSKEF 285 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecC---------------Ceeeccccc
Confidence 8889999988887777889999999999999999999999999999999 999999999
Q ss_pred CCCChHHHHHHHHhCC--------EEe----------------------------------------------eCCeecC
Q 020944 197 KAIYPQERARIQKSGG--------TVS----------------------------------------------SNGRLQG 222 (319)
Q Consensus 197 ~~~~~~E~~ri~~~gg--------~v~----------------------------------------------~~~r~~g 222 (319)
+| +.||+|++..+- ... ...|+.+
T Consensus 286 TP--etERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~ 363 (493)
T KOG1323|consen 286 TP--ETERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLA 363 (493)
T ss_pred Cc--HHHHHHHHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhh
Confidence 99 669999987641 110 0125567
Q ss_pred eeeccccccCccCCc--------CCeeeeCeeEEEEec----CCCeEEEEEcCCCccccCHHHHHHHHHHHHHcC--CCH
Q 020944 223 RLEVSRAFGDRQFKK--------FGVVATPDIHSFEVT----ERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEG--LSV 288 (319)
Q Consensus 223 ~l~~tRalGd~~~k~--------~~v~~~Pdi~~~~l~----~~d~~lvL~SDGl~d~ls~~ei~~ii~~~~~~~--~~~ 288 (319)
.+.+||.|||+++|. +-+++.|+|+.+++. ..|+++||+||||||+++++|+..++++.+... .+|
T Consensus 364 TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp 443 (493)
T KOG1323|consen 364 TIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADP 443 (493)
T ss_pred hheeccccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCCh
Confidence 799999999998773 347889999999886 245599999999999999999999999988543 234
Q ss_pred ---HHHHHHHHHHHHH------------hCCCCCCcEEEEEEec
Q 020944 289 ---TAVSRRLVREAVL------------ERRCKDNCTAIVIIFR 317 (319)
Q Consensus 289 ---~~~a~~L~~~A~~------------~~g~~DNiTvivv~l~ 317 (319)
..+|+.|+..|-- ..++.|||||.||.|.
T Consensus 444 ~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 444 SRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred hHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEecc
Confidence 3466666665521 1257899999999875
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.91 E-value=8.2e-23 Score=181.70 Aligned_cols=196 Identities=19% Similarity=0.259 Sum_probs=136.1
Q ss_pred CCCCceEEEeccCCCCCCCCCceeEEEEEcCCChhH-----HHHHHHHHHHHHHHHccCch-------hHhhhHHHHHhh
Q 020944 68 HTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRL-----AAEYAQKRLHANVISAGLPR-------FRKTDESLLQES 135 (319)
Q Consensus 68 ~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~-----~s~~a~~~l~~~l~~~~~~~-------~~~~~~~l~~~~ 135 (319)
+.-||++++..+ .+..+.|||||+|||. .+.|. +.|+....+..... ..-+.....+..
T Consensus 89 ~~GEDa~Fvss~--------~~~~v~GVADGVGGWa~~GiDpg~fS-~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~ 159 (330)
T KOG1379|consen 89 KGGEDAWFVSSN--------PHAIVMGVADGVGGWAEYGIDPGAFS-RELMSNCERLVQNSDFNPSDPVNLLEKAYAELK 159 (330)
T ss_pred CCCCcceeeccC--------cccceEEEccccchHhhcCcCHHHHH-HHHHHHHHHHhcccccCCCChHHHHHHHHHHHh
Confidence 457999999653 2447899999999885 35554 44444443321111 112222222222
Q ss_pred hc-CCCCCCCeEEEEEEe--CCeEEEEeeCCceEEEEeecccCCCCCCccccCceeEEecCCCCCCCChHHHHHHHHhCC
Q 020944 136 VS-GGWQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGG 212 (319)
Q Consensus 136 ~~-~~~~~GtT~~~~~i~--~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~dH~~~~~~E~~ri~~~gg 212 (319)
.. ...-++|||+++.+. +.+||+||+|||...++|+| ++++-|..+..
T Consensus 160 ~~~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G---------------~vv~~S~~Q~H-------------- 210 (330)
T KOG1379|consen 160 SQKVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREG---------------KVVFRSPEQQH-------------- 210 (330)
T ss_pred hcCCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECC---------------EEEEcCchhee--------------
Confidence 11 123367999999998 78999999999999999999 99888876542
Q ss_pred EEeeCCeecCeeeccc-------cccCccCCcCCeeeeCeeEEEEecCCCeEEEEEcCCCccccCHHHHHHHHHHHHH-c
Q 020944 213 TVSSNGRLQGRLEVSR-------AFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLK-E 284 (319)
Q Consensus 213 ~v~~~~r~~g~l~~tR-------alGd~~~k~~~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d~ls~~ei~~ii~~~~~-~ 284 (319)
.++-.++++- .++| .....+++.+++.++| +||||||||||+|.+++|.+++..... .
T Consensus 211 ------~FN~PyQLs~~p~~~~~~~~d-------~p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~ 276 (330)
T KOG1379|consen 211 ------YFNTPYQLSSPPEGYSSYISD-------VPDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARG 276 (330)
T ss_pred ------ccCCceeeccCCccccccccC-------CccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccc
Confidence 1111122221 1222 2335677899999998 999999999999999999999988876 5
Q ss_pred CCCHHHHHHHHHHHHHH----------------------hCCCCCCcEEEEEE
Q 020944 285 GLSVTAVSRRLVREAVL----------------------ERRCKDNCTAIVII 315 (319)
Q Consensus 285 ~~~~~~~a~~L~~~A~~----------------------~~g~~DNiTvivv~ 315 (319)
...++..|+.|++.|.. ..|..|+||+||..
T Consensus 277 ~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 277 NLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred cccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 67899999999999842 13468999999975
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=2.6e-22 Score=199.17 Aligned_cols=237 Identities=24% Similarity=0.343 Sum_probs=196.3
Q ss_pred ccceeeEEEeeccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEcCCChhHHHHHHHHHHHHHHHHccCch--------
Q 020944 52 DFVEIEADAAEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLPR-------- 123 (319)
Q Consensus 52 ~~~~~~~g~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~~~~-------- 123 (319)
+.+-..+|++...|+|.++.-+.....++. .+ ..+.||.+||-+......+....+..++.++....
T Consensus 518 n~~~~t~Gv~~~~gqrnk~c~~~~~v~nf~----~~-~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr 592 (1081)
T KOG0618|consen 518 NAFLWTYGVAGVSGQRNKVCSRAVWVENFF----LN-PQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMR 592 (1081)
T ss_pred ceeheeeccchhcccccchhhhhhhhhhcc----cC-CcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence 445667999999999999887776655431 11 33689999999999999988888888887754322
Q ss_pred --hHhhhHHHHHhhhcCCCCCCCeEEEEEEeCC--------eEEEEeeCCceEEEEeecccCCCCCCccccCceeEEecC
Q 020944 124 --FRKTDESLLQESVSGGWQDGATAVCIWILGR--------TVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVT 193 (319)
Q Consensus 124 --~~~~~~~l~~~~~~~~~~~GtT~~~~~i~~~--------~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT 193 (319)
|...++++ ...+..-|..++.+.+..+ ++.+||+|+|.+++++++ +..++|
T Consensus 593 ~~fl~~~rkl----g~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng---------------~~~p~t 653 (1081)
T KOG0618|consen 593 NTFLRLNRKL----GEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNG---------------KPLPTT 653 (1081)
T ss_pred HHHHHHhhhh----hhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcC---------------CcCccc
Confidence 55555555 3333455666777777543 689999999999999999 777777
Q ss_pred CCC-CCCChHHHHHHHHhCCEEeeCCeecCeeeccccccCccCCcCCeeeeCeeEEEEecCCCeEEEEEcCCCccccCHH
Q 020944 194 RVH-KAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPS 272 (319)
Q Consensus 194 ~dH-~~~~~~E~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d~ls~~ 272 (319)
+-. ...+++|.+||...+|++.++++++|....||++|.+...+. +.+.|+|....|.+.|+|||+++-+||++|+.+
T Consensus 654 ~~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P~-v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid 732 (1081)
T KOG0618|consen 654 RSPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLFPH-VLPDPHVSVVILTEQDEFLIVGNKQLWSVLSID 732 (1081)
T ss_pred ccccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeeccccccccc-ccCCCceeeEecccCceEEEEcchHHhhhccHH
Confidence 754 556899999999999999999999999999999999988885 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 020944 273 DAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 318 (319)
Q Consensus 273 ei~~ii~~~~~~~~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l~~ 318 (319)
++++.++. ..+|-.+|++|++.|. +.|+.||++|+||+|..
T Consensus 733 ~a~~~vRn----~~dpL~AAkKL~d~Aq-SYgc~~nv~vlVv~l~~ 773 (1081)
T KOG0618|consen 733 TAVDAVRN----VEDPLLAAKKLCDLAQ-SYGCAENVSVLVVRLNH 773 (1081)
T ss_pred HHHHHHhc----CCchHHHHHHHHHHHH-hcccccCeeEEEEEeec
Confidence 99999973 3478999999999996 89999999999999863
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.82 E-value=5.8e-20 Score=160.70 Aligned_cols=171 Identities=22% Similarity=0.263 Sum_probs=92.0
Q ss_pred eeccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEcCCChhHHHHHHHHHHH----HHHHHccCch--------hHhhh
Q 020944 61 AEDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLH----ANVISAGLPR--------FRKTD 128 (319)
Q Consensus 61 ~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~----~~l~~~~~~~--------~~~~~ 128 (319)
.+++|.|..|||++.+.... +..+++||||+||...++.++..++ +.+.+..... +..+.
T Consensus 3 ~sh~~~~~~nqD~~~~~~~~--------~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~ 74 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTDD--------DGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIK 74 (212)
T ss_dssp ----TTSSS--EEEEEE-TC--------CTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeCC--------CCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 58899999999999975432 2367799999996655555554444 4444433221 22233
Q ss_pred HHHHHh---------hhcCCCCCCCeEEEEEEeCCeEEEEeeCCceEEEE-eecccCCCCCCccccCceeEEecCCCCCC
Q 020944 129 ESLLQE---------SVSGGWQDGATAVCIWILGRTVFVANIGDAKAVVA-RSSIVDGSNNHLDELSSLKAIVVTRVHKA 198 (319)
Q Consensus 129 ~~l~~~---------~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~-r~~~~~g~~~~~~~~~~~~~~~LT~dH~~ 198 (319)
+.+... ........+||++++++.++.++++|+||||+|++ +++ .+..++.+|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g---------------~~~~l~~~~~~ 139 (212)
T PF13672_consen 75 KEILSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNG---------------EIQQLTDDHSG 139 (212)
T ss_dssp HHHHHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETT---------------EEEE-S---BH
T ss_pred HHHHHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCC---------------EEEEcCCCccc
Confidence 333211 12233456899999999999999999999999765 555 89999999972
Q ss_pred CChHHHHHHHHhCCEEeeCCeecCeeeccccccCccCCcCCeeeeCeeEEEEecCCCeEEEEEcCCCccccCHHH-HHHH
Q 020944 199 IYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD-AVEF 277 (319)
Q Consensus 199 ~~~~E~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d~ls~~e-i~~i 277 (319)
+... .++.+.... .....++..+.+.+++ .|+|||||||+.+...+ +..+
T Consensus 140 ----~~~~-------------------~~~~~~~~~-----~~~~~~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~ 190 (212)
T PF13672_consen 140 ----EYPN-------------------QTRSLTGDD-----PEPDVQYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQF 190 (212)
T ss_dssp ----HHHH-------------------CTTSCCHHC-----CCTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH
T ss_pred ----hhhh-------------------hhhccCccc-----cccCCeEEEEEcCCCC-EEEEECcCccccCCCHHHHHHH
Confidence 1110 033333221 1113355556666676 88999999999998655 6667
Q ss_pred HHHHHH
Q 020944 278 VQKLLK 283 (319)
Q Consensus 278 i~~~~~ 283 (319)
+....+
T Consensus 191 l~~~~~ 196 (212)
T PF13672_consen 191 LKDLWN 196 (212)
T ss_dssp ------
T ss_pred hhhccc
Confidence 666544
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.77 E-value=5.2e-17 Score=139.95 Aligned_cols=169 Identities=20% Similarity=0.180 Sum_probs=122.1
Q ss_pred CCCCceEEEeccCCCCCCCCCceeEEEEEcCCChhHHHHHHHHHHHHHHHHccCc--h----hHhhhHHHHHhhhcCCCC
Q 020944 68 HTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISAGLP--R----FRKTDESLLQESVSGGWQ 141 (319)
Q Consensus 68 ~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~~~~--~----~~~~~~~l~~~~~~~~~~ 141 (319)
...-|.|.+.... ....+|+|+||||+...|.+++..+...|...... . +..+++.+... ....
T Consensus 15 ~~~GD~~~~~~~~-------~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~~l~~~n~~l~~~---~~~~ 84 (193)
T smart00331 15 QVGGDFYDVVKLP-------EGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQILERLNRAIYEN---GEDG 84 (193)
T ss_pred hcCccEEEEEEeC-------CCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc---CCCC
Confidence 4567888765421 12478999999998888888888888777654322 1 55666665543 2345
Q ss_pred CCCeEEEEEE--eCCeEEEEeeCCceEEEEe-ecccCCCCCCccccCceeEEecCCCCCCCChHHHHHHHHhCCEEeeCC
Q 020944 142 DGATAVCIWI--LGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNG 218 (319)
Q Consensus 142 ~GtT~~~~~i--~~~~l~vanvGDSRa~l~r-~~~~~g~~~~~~~~~~~~~~~LT~dH~~~~~~E~~ri~~~gg~v~~~~ 218 (319)
+|+|++++++ ..++++++|+||+|+|+++ ++ ...+++.+.
T Consensus 85 ~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~---------------~~~~~~~~~---------------------- 127 (193)
T smart00331 85 MFATLFLALYDFAGGTLSYANAGHSPPYLLRADG---------------GLVEDLDDL---------------------- 127 (193)
T ss_pred cEEEEEEEEEECCCCEEEEEeCCCCceEEEECCC---------------CeEEEcCCC----------------------
Confidence 7999999988 5679999999999999999 44 444444431
Q ss_pred eecCeeeccccccCccCCcCCeeeeCeeEEEEecCCCeEEEEEcCCCccccCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 020944 219 RLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVRE 298 (319)
Q Consensus 219 r~~g~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d~ls~~ei~~ii~~~~~~~~~~~~~a~~L~~~ 298 (319)
++.+|... ..++++..+.+.++| .|+|+||||||.++.+++.+++.+.. ..+++++++++.++
T Consensus 128 --------~~~lG~~~------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~ 190 (193)
T smart00331 128 --------GAPLGLEP------DVEVDVRELTLEPGD-LLLLYTDGLTEARNPERLEELLEELL--GSPPAEIAQRILEE 190 (193)
T ss_pred --------CceeeeCC------CCcceeEEEeeCCCC-EEEEECCCccccCChHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 44566322 123566778888888 89999999999999999999998754 34788999988887
Q ss_pred HH
Q 020944 299 AV 300 (319)
Q Consensus 299 A~ 300 (319)
++
T Consensus 191 ~~ 192 (193)
T smart00331 191 LL 192 (193)
T ss_pred Hh
Confidence 64
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.64 E-value=1.1e-14 Score=148.97 Aligned_cols=199 Identities=16% Similarity=0.094 Sum_probs=132.9
Q ss_pred cceeeEEEe-eccCCCCCCCceEEEeccCCCCCCCCCceeEEEEEcCCChhHHHHHHHHHHHHHHHHc---cCc---hhH
Q 020944 53 FVEIEADAA-EDKGSRHTMEDASVVLVDASSDSPPNLRCAHFAIFDGHGGRLAAEYAQKRLHANVISA---GLP---RFR 125 (319)
Q Consensus 53 ~~~~~~g~~-s~~G~R~~nED~~~~~~~~~~~~~~~~~~~l~~V~DGhGG~~~s~~a~~~l~~~l~~~---~~~---~~~ 125 (319)
.+++.+|++ ..++.+..+.|.|.+.... ....+++|+||+|....|..++..+.+.+.+. ..+ .+.
T Consensus 549 ~~~~~~g~a~~~k~g~~vsGD~y~~~~l~-------~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~~~~ai~ 621 (764)
T TIGR02865 549 KYHVSTGVARAAKDGELVSGDSYSFGKLS-------AGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFDREVAIK 621 (764)
T ss_pred ceeehhhHHHhcCCCCcccCceEEEEEEC-------CCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 356666665 3455678899999875421 12257899999994444445555554444322 111 155
Q ss_pred hhhHHHHHhhhcCCCCCCCeEEEEEEe--CCeEEEEeeCCceEEEEeecccCCCCCCccccCceeEEecCCCCCCCChHH
Q 020944 126 KTDESLLQESVSGGWQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQE 203 (319)
Q Consensus 126 ~~~~~l~~~~~~~~~~~GtT~~~~~i~--~~~l~vanvGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~dH~~~~~~E 203 (319)
.+|..+... ....+.+|+.+++++ .+.+.++|+|+++.|+.|++ .+.+++..+.|
T Consensus 622 ~lN~~L~~~---~~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~---------------~v~~i~s~~lP----- 678 (764)
T TIGR02865 622 TVNSILSLR---STDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGA---------------KVEVIRSSNLP----- 678 (764)
T ss_pred HHHHHHHhC---CCCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECC---------------EEEEecCCCce-----
Confidence 556555432 223457999988885 57899999999999999987 88877654433
Q ss_pred HHHHHHhCCEEeeCCeecCeeeccccccCccCCcCCeeeeCeeEEEEecCCCeEEEEEcCCCccccCHHH-----HHHHH
Q 020944 204 RARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD-----AVEFV 278 (319)
Q Consensus 204 ~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d~ls~~e-----i~~ii 278 (319)
+|-. . ..+++....++.++| +|||+||||||..++++ +.+++
T Consensus 679 --------------------------lGil--~----~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l 725 (764)
T TIGR02865 679 --------------------------IGIL--D----EVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKL 725 (764)
T ss_pred --------------------------eEec--c----CCccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHH
Confidence 2210 0 114566677888888 99999999999887543 45555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCC--CCCCcEEEEEEe
Q 020944 279 QKLLKEGLSVTAVSRRLVREAVLERR--CKDNCTAIVIIF 316 (319)
Q Consensus 279 ~~~~~~~~~~~~~a~~L~~~A~~~~g--~~DNiTvivv~l 316 (319)
... ...+|+++++.|++.|....+ ..||+|++++++
T Consensus 726 ~~~--~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 726 KET--NTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred Hhc--CCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 432 234799999999999974322 489999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.47 E-value=1.1e-11 Score=106.51 Aligned_cols=172 Identities=19% Similarity=0.191 Sum_probs=105.4
Q ss_pred eeEEEEEcCCC-hhHHHHHHHHHHHHHHHH---cc-Cch--hHhhhHHHHHhhhcCCCCCCCeEEEEEEe--CCeEEEEe
Q 020944 90 CAHFAIFDGHG-GRLAAEYAQKRLHANVIS---AG-LPR--FRKTDESLLQESVSGGWQDGATAVCIWIL--GRTVFVAN 160 (319)
Q Consensus 90 ~~l~~V~DGhG-G~~~s~~a~~~l~~~l~~---~~-~~~--~~~~~~~l~~~~~~~~~~~GtT~~~~~i~--~~~l~van 160 (319)
..++.|+|+.| |-.++ +.+..+...+.. .. .+. +..+|+.+....... ...+|++++.+. .+.++++|
T Consensus 4 ~~~~~v~D~~GhG~~aa-~~~~~~~~~~~~~~~~~~~p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~l~~~~ 80 (193)
T PF07228_consen 4 RYFIIVGDVSGHGVSAA-LLSAALASAIRELLDEGLDPEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGTLTYAN 80 (193)
T ss_dssp EEEEEEEEESSSSHHHH-HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEEecCCCHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceEEEEeC
Confidence 36789999999 44443 333334333322 21 111 566676664444332 357888888875 44799999
Q ss_pred eCCceEEEEeecccCCCCCCccccCceeEEecCCCCCCCChHHHHHHHHhCCEEeeCCeecCeeeccccccCccCCcCCe
Q 020944 161 IGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGV 240 (319)
Q Consensus 161 vGDSRa~l~r~~~~~g~~~~~~~~~~~~~~~LT~dH~~~~~~E~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~~~v 240 (319)
+|++++++++.+. + ....+.....| +|-..-
T Consensus 81 aG~~~~l~~~~~~--~-----------~~~~~~~~~~~-------------------------------lG~~~~----- 111 (193)
T PF07228_consen 81 AGHPPPLLLRPGG--R-----------EIEQLESEGPP-------------------------------LGIFED----- 111 (193)
T ss_dssp ESSSEEEEEETTC--T-----------EEEEETCSSBB-------------------------------CSSSCT-----
T ss_pred CCCCCEEEEeccc--c-----------ceeecccCccc-------------------------------eeeecc-----
Confidence 9999999999940 0 34433332222 332111
Q ss_pred eeeCeeEEEEecCCCeEEEEEcCCCccccCHHH-------HHHHHHHHHHcCCCHHHHHHHHHHHHHH--hCCCCCCcEE
Q 020944 241 VATPDIHSFEVTERDHFIILGCDGLWGVFGPSD-------AVEFVQKLLKEGLSVTAVSRRLVREAVL--ERRCKDNCTA 311 (319)
Q Consensus 241 ~~~Pdi~~~~l~~~d~~lvL~SDGl~d~ls~~e-------i~~ii~~~~~~~~~~~~~a~~L~~~A~~--~~g~~DNiTv 311 (319)
..+....+.+.++| .|+|+||||+|....+. +.+++... ...+++++++.|++.+.. .....||+|+
T Consensus 112 -~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~DD~tv 187 (193)
T PF07228_consen 112 -IDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDRFGKGPLRDDITV 187 (193)
T ss_dssp -TCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHTTSSTSS-EEE
T ss_pred -ccccceEEEecccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcCCCCCCceEE
Confidence 13334566777777 89999999999985443 23444332 345789999999998864 2358999999
Q ss_pred EEEEec
Q 020944 312 IVIIFR 317 (319)
Q Consensus 312 ivv~l~ 317 (319)
++++++
T Consensus 188 l~~~~~ 193 (193)
T PF07228_consen 188 LVIRRQ 193 (193)
T ss_dssp EEEEE-
T ss_pred EEEEEC
Confidence 999874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.26 E-value=9.7e-05 Score=70.12 Aligned_cols=170 Identities=16% Similarity=0.143 Sum_probs=106.1
Q ss_pred eeEEEEEcCCC-hhHHHHHHHHHHH---HHHHHc--cCch--hHhhhHHHHHhhhcCCCCCCCeEEEEEEe--CCeEEEE
Q 020944 90 CAHFAIFDGHG-GRLAAEYAQKRLH---ANVISA--GLPR--FRKTDESLLQESVSGGWQDGATAVCIWIL--GRTVFVA 159 (319)
Q Consensus 90 ~~l~~V~DGhG-G~~~s~~a~~~l~---~~l~~~--~~~~--~~~~~~~l~~~~~~~~~~~GtT~~~~~i~--~~~l~va 159 (319)
...++|.|..| |-.++-. ..... +.+... ..+. +..+|+.+....... +=+|....+++ ...+..+
T Consensus 175 ~~~i~I~DvsG~Gv~aal~-m~~~~~~~~~~~~~~~~~p~~~l~~~n~~~~~~~~~~---~f~T~~~~~~d~~~~~l~y~ 250 (367)
T COG2208 175 RLRIGIGDVSGKGVPAALL-MLMPKLALRLLLESGPLDPADVLETLNRVLKQNLEED---MFVTLFLGVYDLDSGELTYS 250 (367)
T ss_pred EEEEEEEeccCCCHHHHHH-HHHHHHHHHHhhhcccCCHHHHHHHHHHHHHhcccCC---cEEEEEEEEEeccCCEEEEe
Confidence 45689999999 7766555 22221 122222 1111 555555554433222 44677766665 4589999
Q ss_pred eeCCceEEEEeecccCCCCCCccccCcee--EEecCCCCCCCChHHHHHHHHhCCEEeeCCeecCeeeccccccCccCCc
Q 020944 160 NIGDAKAVVARSSIVDGSNNHLDELSSLK--AIVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKK 237 (319)
Q Consensus 160 nvGDSRa~l~r~~~~~g~~~~~~~~~~~~--~~~LT~dH~~~~~~E~~ri~~~gg~v~~~~r~~g~l~~tRalGd~~~k~ 237 (319)
|+|---+++++.+ | . ...++ .....+|...
T Consensus 251 ~aGH~p~~i~~~~---~-----------~~~~~~l~-------------------------------~~g~piG~~~--- 282 (367)
T COG2208 251 NAGHEPALILSAD---G-----------EIEVEDLT-------------------------------ALGLPIGLLP--- 282 (367)
T ss_pred eCCCCCeeEEEcC---C-----------CceeEEcc-------------------------------CCCceeeecC---
Confidence 9999999998886 1 1 11111 1234455211
Q ss_pred CCeeeeCeeEEEEecCCCeEEEEEcCCCcc-------ccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhC---CCCC
Q 020944 238 FGVVATPDIHSFEVTERDHFIILGCDGLWG-------VFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLER---RCKD 307 (319)
Q Consensus 238 ~~v~~~Pdi~~~~l~~~d~~lvL~SDGl~d-------~ls~~ei~~ii~~~~~~~~~~~~~a~~L~~~A~~~~---g~~D 307 (319)
...+.+....+.++| .++|-|||+++ .+..+....++... ...+++++++.+.+....-. .-.|
T Consensus 283 ---~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~i~~~l~~~~~~~~~~D 356 (367)
T COG2208 283 ---DYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGRL--LGQPAEEILEAILESLEELQGDQIQDD 356 (367)
T ss_pred ---CccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhhCCccccC
Confidence 124455677787866 99999999998 56677777777763 33478889988887765322 3468
Q ss_pred CcEEEEEEec
Q 020944 308 NCTAIVIIFR 317 (319)
Q Consensus 308 NiTvivv~l~ 317 (319)
|+|++++++.
T Consensus 357 DiTll~lk~~ 366 (367)
T COG2208 357 DITLLVLKVK 366 (367)
T ss_pred ceEEEEEEec
Confidence 8999999975
No 20
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=61.06 E-value=15 Score=31.26 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCc-----------cccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 020944 255 DHFIILGCDGLW-----------GVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAV 300 (319)
Q Consensus 255 d~~lvL~SDGl~-----------d~ls~~ei~~ii~~~~~~~~~~~~~a~~L~~~A~ 300 (319)
|+.++..|.|+| |+|.++..-+.+....++..-|+++|..|++.-.
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq 127 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQ 127 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 336777888887 7888888877776665555669999999998775
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=46.36 E-value=13 Score=26.57 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=15.0
Q ss_pred ecCCCeEEEEEcCCCccccCH
Q 020944 251 VTERDHFIILGCDGLWGVFGP 271 (319)
Q Consensus 251 l~~~d~~lvL~SDGl~d~ls~ 271 (319)
+...++.+|+++||+|=.+..
T Consensus 23 l~~~G~Rllva~nGv~lEv~r 43 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVRR 43 (72)
T ss_pred cccCCcEEEEecCcEEEEEec
Confidence 343455889999999966553
No 22
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=31.28 E-value=2e+02 Score=23.14 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=29.7
Q ss_pred eeeCeeEEEEecCCCeEEEEEcCCCccccCHHHHHHHHHHHH
Q 020944 241 VATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLL 282 (319)
Q Consensus 241 ~~~Pdi~~~~l~~~d~~lvL~SDGl~d~ls~~ei~~ii~~~~ 282 (319)
.+.|.+....++++.--++-...|+|..++.++...+.....
T Consensus 75 LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 116 (157)
T PF14014_consen 75 LPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKEAK 116 (157)
T ss_pred CCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHHHH
Confidence 457777777777555445568889999988887777665543
No 23
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=28.99 E-value=2.4e+02 Score=21.58 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=39.6
Q ss_pred EcCCCccccCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCCcEEEEEEe
Q 020944 261 GCDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIVIIF 316 (319)
Q Consensus 261 ~SDGl~d~ls~~ei~~ii~~~~~~~--~~~~~~a~~L~~~A~~~~g~~DNiTvivv~l 316 (319)
.+|.+-+.++..++.+.+....... ...+.+|+.+++..+......+-+++-+-+.
T Consensus 42 ~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~Kp 99 (116)
T TIGR00525 42 ESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVSKP 99 (116)
T ss_pred ccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEEeC
Confidence 5889999999999999998876542 3467788888887774333345565555543
No 24
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=27.36 E-value=1.5e+02 Score=20.07 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 020944 270 GPSDAVEFVQKLLKEGLSVTAVSRRLV 296 (319)
Q Consensus 270 s~~ei~~ii~~~~~~~~~~~~~a~~L~ 296 (319)
.-++....++..++...+..++++.|.
T Consensus 14 ~Ln~~a~~Iw~~~~g~~t~~ei~~~l~ 40 (68)
T PF05402_consen 14 TLNETAAFIWELLDGPRTVEEIVDALA 40 (68)
T ss_dssp ---THHHHHHHH--SSS-HHHHHHHHH
T ss_pred cccHHHHHHHHHccCCCCHHHHHHHHH
Confidence 334444555555544445555555444
No 25
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=26.92 E-value=2.3e+02 Score=21.43 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=41.0
Q ss_pred cCCCccccCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCCcEEEEEE
Q 020944 262 CDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIVII 315 (319)
Q Consensus 262 SDGl~d~ls~~ei~~ii~~~~~~~--~~~~~~a~~L~~~A~~~~g~~DNiTvivv~ 315 (319)
+|-+-+.++..++.+.+....... ...+.+|+.+++..+...+..+.+++=|-+
T Consensus 41 ~D~l~~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~~~v~~v~v~v~K 96 (113)
T PF02152_consen 41 SDDLDDTVDYAELAEAIRELVENSHFNLLETLAERIADRILKEFPQVQSVTVKVRK 96 (113)
T ss_dssp HTTGGGSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHTTTESEEEEEEEE
T ss_pred ccccccccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhCCCccEEEEEEEC
Confidence 588999999999999998877643 468899999999988655545555554443
No 26
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=26.87 E-value=2.2e+02 Score=21.93 Aligned_cols=54 Identities=7% Similarity=0.116 Sum_probs=38.1
Q ss_pred EcCCCccccCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCCCCCcEEEEE
Q 020944 261 GCDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIVI 314 (319)
Q Consensus 261 ~SDGl~d~ls~~ei~~ii~~~~~~~--~~~~~~a~~L~~~A~~~~g~~DNiTvivv 314 (319)
.||-|-+.++...+.+.+....... ...+.+|+.|.+..+........+++-|-
T Consensus 43 ~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~~~~v~~v~v~v~ 98 (118)
T cd00534 43 ESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLEDYPKVSAIKVKVE 98 (118)
T ss_pred ccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 6899999999999999998876532 35678888888888743233344444443
No 27
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=22.29 E-value=1.8e+02 Score=20.96 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCccccCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 020944 255 DHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVR 297 (319)
Q Consensus 255 d~~lvL~SDGl~d~ls~~ei~~ii~~~~~~~~~~~~~a~~L~~ 297 (319)
+.++|+...| ++.-+++...|+..++...++.++++.|.+
T Consensus 16 ~~~Vl~~p~~---~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~ 55 (81)
T TIGR03859 16 DCYVLLYPEG---MVKLNDSAGEILELCDGKRSLAEIIQELAQ 55 (81)
T ss_pred CcEEEEcCCc---eeeeChHHHHHHHHccCCCcHHHHHHHHHH
Confidence 3466666654 455556666666666655566666655543
No 28
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=21.37 E-value=4.6e+02 Score=21.44 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=40.0
Q ss_pred CCeEEEEEcCCCccccCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC-CCcEEEEEEecC
Q 020944 254 RDHFIILGCDGLWGVFGPS----DAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCK-DNCTAIVIIFRH 318 (319)
Q Consensus 254 ~d~~lvL~SDGl~d~ls~~----ei~~ii~~~~~~~~~~~~~a~~L~~~A~~~~g~~-DNiTvivv~l~~ 318 (319)
++.++++..|+.=.-++.. .+..+++.......+|.++.+.|-+......... --+|++++.++.
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~p~~~l~~ln~~l~~~~~~~~~~~t~~~~~~d~ 71 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLDPEELLEALNRRLYRDLKGDNRYATACYAIIDP 71 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHTTTTSTTEEEEEEEEET
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhccccceEEEEEecc
Confidence 4557777787665544443 4444555555666678888887766653333333 567888777654
No 29
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=20.69 E-value=1.8e+02 Score=19.87 Aligned_cols=26 Identities=8% Similarity=0.241 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 020944 269 FGPSDAVEFVQKLLKEGLSVTAVSRRLVR 297 (319)
Q Consensus 269 ls~~ei~~ii~~~~~~~~~~~~~a~~L~~ 297 (319)
-+++||..++..+ ..+|.+++++|+.
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHh
Confidence 5889999888765 4589999999986
No 30
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=20.29 E-value=1.1e+02 Score=27.89 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=19.0
Q ss_pred CCCCCCCeEEEEEEeCCeEEEEeeCCc
Q 020944 138 GGWQDGATAVCIWILGRTVFVANIGDA 164 (319)
Q Consensus 138 ~~~~~GtT~~~~~i~~~~l~vanvGDS 164 (319)
.+.-+|||.+.+ +.++.+|..|+|-+
T Consensus 128 sG~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 128 SGALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp ---BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CCccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 344579998876 89999999999966
Done!