BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020945
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PWI|A Chain A, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D-Glucarate
pdb|3PWI|B Chain B, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D-Glucarate
Length = 446
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 99 RYAYPWWREKEIVSEERRSQGLCPLTPEEAALVLQALGIDKDTHIYIAAGEIYGGEKRLA 158
++ P E +++ L L+ AA + + I KD + GEI GGEK
Sbjct: 4 QFTTPVVTEMQVIPVAGHDSMLMNLSGAHAAFFTRNIVIIKDNSGHTGVGEIPGGEKIRK 63
Query: 159 ALRAAFPRIVRKEM 172
L A P +V K +
Sbjct: 64 TLEDAIPLVVGKTL 77
>pdb|3PWG|A Chain A, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|B Chain B, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|C Chain C, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|D Chain D, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
Length = 446
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 99 RYAYPWWREKEIVSEERRSQGLCPLTPEEAALVLQALGIDKDTHIYIAAGEIYGGEKRLA 158
++ P E +++ L L AA + + I KD + GEI GGEK
Sbjct: 4 QFTTPVVTEMQVIPVAGHDSMLMNLGGAHAAFFTRNIVIIKDNSGHTGVGEIPGGEKIRK 63
Query: 159 ALRAAFPRIVRKEM 172
L A P +V K +
Sbjct: 64 TLEDAIPLVVGKTL 77
>pdb|1YGH|A Chain A, Hat Domain Of Gcn5 From Saccharomyces Cerevisiae
pdb|1YGH|B Chain B, Hat Domain Of Gcn5 From Saccharomyces Cerevisiae
Length = 164
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 193 DFMVSTASDIFIPTYDGNMAKVVEGHRRYLGFKKSILLDRKILVGLLDMHHNGTL 247
D++ +T++ + TY N A G+ + GF K I LD+ I +G + + GTL
Sbjct: 100 DYVRNTSNIKYFLTYADNYAI---GYFKKQGFTKEITLDKSIWMGYIKDYEGGTL 151
>pdb|1EC7|A Chain A, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|B Chain B, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|C Chain C, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|D Chain D, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC8|A Chain A, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|B Chain B, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|C Chain C, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|D Chain D, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC9|A Chain A, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|B Chain B, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|C Chain C, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|D Chain D, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1ECQ|A Chain A, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|B Chain B, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|C Chain C, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|D Chain D, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|4GYP|A Chain A, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
pdb|4GYP|B Chain B, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
Length = 446
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%)
Query: 99 RYAYPWWREKEIVSEERRSQGLCPLTPEEAALVLQALGIDKDTHIYIAAGEIYGGEKRLA 158
++ P E +++ L L+ A + + I KD + GEI GGEK
Sbjct: 4 QFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRK 63
Query: 159 ALRAAFPRIVRKEM 172
L A P +V K +
Sbjct: 64 TLEDAIPLVVGKTL 77
>pdb|1JDF|A Chain A, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|B Chain B, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|C Chain C, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|D Chain D, Glucarate Dehydratase From E.Coli N341d Mutant
Length = 446
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%)
Query: 99 RYAYPWWREKEIVSEERRSQGLCPLTPEEAALVLQALGIDKDTHIYIAAGEIYGGEKRLA 158
++ P E +++ L L+ A + + I KD + GEI GGEK
Sbjct: 4 QFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRK 63
Query: 159 ALRAAFPRIVRKEM 172
L A P +V K +
Sbjct: 64 TLEDAIPLVVGKTL 77
>pdb|1JCT|A Chain A, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
pdb|1JCT|B Chain B, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
Length = 446
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%)
Query: 99 RYAYPWWREKEIVSEERRSQGLCPLTPEEAALVLQALGIDKDTHIYIAAGEIYGGEKRLA 158
++ P E +++ L L+ A + + I KD + GEI GGEK
Sbjct: 4 QFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRK 63
Query: 159 ALRAAFPRIVRKEM 172
L A P +V K +
Sbjct: 64 TLEDAIPLVVGKTL 77
>pdb|1UHN|A Chain A, The Crystal Structure Of The Calcium Binding Protein
Atcbl2 From Arabidopsis Thaliana
Length = 189
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 225 KKSILLDRKILVGLLDMHHNGTLSFNEFTVAVRLAH 260
K+S+ DR + L D HNG L F EF A+ + H
Sbjct: 51 KESLFADR--VFDLFDTKHNGILGFEEFARALSVFH 84
>pdb|2ZFD|A Chain A, The Crystal Structure Of Plant Specific Calcium Binding
Protein Atcbl2 In Complex With The Regulatory Domain Of
Atcipk14
Length = 226
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 225 KKSILLDRKILVGLLDMHHNGTLSFNEFTVAVRLAH 260
K+S+ DR + L D HNG L F EF A+ + H
Sbjct: 82 KESLFADR--VFDLFDTKHNGILGFEEFARALSVFH 115
>pdb|2JC2|A Chain A, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|B Chain B, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|C Chain C, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
pdb|2JC2|D Chain D, The Crystal Structure Of The Natural F112l Human Sorcin
Mutant
Length = 198
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 223 GFKKSILLDRKILVGLLDMHHNGTLSFNEF 252
G+K L +++V +LD +GT+ FNEF
Sbjct: 66 GYKPFNLETCRLMVSMLDRDMSGTMGFNEF 95
>pdb|1JUO|A Chain A, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
pdb|1JUO|B Chain B, Crystal Structure Of Calcium-Free Human Sorcin: A Member
Of The Penta-Ef-Hand Protein Family
Length = 198
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 223 GFKKSILLDRKILVGLLDMHHNGTLSFNEF 252
G+K L +++V +LD +GT+ FNEF
Sbjct: 66 GYKPFNLETCRLMVSMLDRDMSGTMGFNEF 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,510,405
Number of Sequences: 62578
Number of extensions: 380673
Number of successful extensions: 827
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 12
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)