BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020947
(319 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224118512|ref|XP_002317839.1| predicted protein [Populus trichocarpa]
gi|222858512|gb|EEE96059.1| predicted protein [Populus trichocarpa]
Length = 306
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/320 (68%), Positives = 250/320 (78%), Gaps = 28/320 (8%)
Query: 2 ATLSTSFKLSTSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTLS 61
TL TSF ++ ++S S + +S +SSS S+ K+Q+ K+ S
Sbjct: 7 GTLQTSF---------NNPFVSLSPTPPKTSLASSSVIST-----------KTQIPKS-S 45
Query: 62 YNSSFFGPFKQITVMRPTKVHTKPLP-----VRMSWDGPLSSVKLIIQGKNLELTDTVKN 116
SSF G K ++ + + PL V+MSWDGPL SVKLIIQGKNLELTDTVK
Sbjct: 46 LKSSFLG--KNMSFIELGRTARTPLTHGGCSVKMSWDGPLHSVKLIIQGKNLELTDTVKR 103
Query: 117 HVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 176
HVE+KVGKAV KHSHLVREVDVRLSVRGGE GKGPRIRRCEVTLFT +HGVVRAEEDAET
Sbjct: 104 HVEDKVGKAVQKHSHLVREVDVRLSVRGGELGKGPRIRRCEVTLFTNRHGVVRAEEDAET 163
Query: 177 VYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDN 236
+YASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV QVVE DAD S++E ++
Sbjct: 164 IYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVPQVVEGDADEVSQQEVED 223
Query: 237 FVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
++E+VR KFF+MPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYG+IIPK
Sbjct: 224 SIEEVVRTKFFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPK 283
Query: 297 GNGKAKKLEPLEVETASSSS 316
GN +A++LEPL VE A SS
Sbjct: 284 GNDEAERLEPLVVEPARESS 303
>gi|118488335|gb|ABK95986.1| unknown [Populus trichocarpa]
Length = 306
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/288 (70%), Positives = 239/288 (82%), Gaps = 11/288 (3%)
Query: 36 SSSSSSSSSVSPFVTPRKSQLAKTLSYNSSFFGP-FKQITVMRPTKVHTKPLP-----VR 89
+S++ + S S FV K+Q+ K S F G + + R TK+ PL +R
Sbjct: 20 TSTTPTPSLASSFVNSTKTQVPKVF-LKSRFLGKNVNFVEIRRKTKI---PLSHGGSSIR 75
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK 149
MSWDGPLSSVKLIIQGK+LEL+DTVK HVE+KVGKAV K SHLVR VDVRLSVRGGE GK
Sbjct: 76 MSWDGPLSSVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELGK 135
Query: 150 GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
GPRIRRCEVTLFTK+HGVVRAEEDAET++ASIDLVSSIIQRKLRKIK+KESDHGRHMKGF
Sbjct: 136 GPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHMKGF 195
Query: 210 NRLKVREPVTQ-VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
NRLKVREP+ Q VVE+DAD S++ED+++++E+VR K+F+MPPLTVSEAIEQLE+V HDF
Sbjct: 196 NRLKVREPMHQVVVEDDADEVSQQEDEDYIEEVVRTKYFDMPPLTVSEAIEQLEHVHHDF 255
Query: 269 YGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 316
YGFR+EETGEINI+YKRKAGGYG+IIPKGNG+A++LEPL VE A S
Sbjct: 256 YGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPS 303
>gi|255566888|ref|XP_002524427.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor,
putative [Ricinus communis]
gi|223536311|gb|EEF37962.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor,
putative [Ricinus communis]
Length = 311
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/262 (74%), Positives = 222/262 (84%), Gaps = 4/262 (1%)
Query: 59 TLSYNSSFFGPFKQIT-VMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNH 117
+LS +SF P K + V + VRMSW+GPLSSVKLI QGKNLELTDTVK H
Sbjct: 47 SLSSKTSFLNPLKLGSNVKYFENKRGRRSAVRMSWEGPLSSVKLITQGKNLELTDTVKKH 106
Query: 118 VEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 177
VE+KVGKAV KHSHLVREVDVRLSVRGGEFGKGP+IRRCEVTLFTKKHGV+RAEEDAET+
Sbjct: 107 VEDKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPKIRRCEVTLFTKKHGVIRAEEDAETI 166
Query: 178 YASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQS---EEED 234
YASIDLVSSIIQRKLRKIKEK SDHGRHMKGFNRLKVREPV + V++D D +ED
Sbjct: 167 YASIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPVKDDTDEVDGVLGDED 226
Query: 235 DNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVII 294
++++DE+VR K+F+MPPLTVSEAIEQL+NVDHDFYGFRNEETGEINI+YKRKAGGYG+II
Sbjct: 227 EDYIDEVVRTKYFDMPPLTVSEAIEQLKNVDHDFYGFRNEETGEINIIYKRKAGGYGIII 286
Query: 295 PKGNGKAKKLEPLEVETASSSS 316
PK NGKA+KLEP+ +E A S
Sbjct: 287 PKENGKAEKLEPVVIEPAREPS 308
>gi|359490749|ref|XP_003634154.1| PREDICTED: 30S ribosomal protein 1, chloroplastic-like [Vitis
vinifera]
Length = 298
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/241 (77%), Positives = 215/241 (89%)
Query: 76 MRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE 135
+ T TKPL VRMSWDGPLSSVKLI+QGKNLELTDTV++HVEEKVGKAV KHSHLVRE
Sbjct: 55 LNATTRQTKPLAVRMSWDGPLSSVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSHLVRE 114
Query: 136 VDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI 195
VDVRLS+RGGE GKGP+IRRCEVTLFTKKHGVVRAEE AET+Y SID+VSSIIQRKLRKI
Sbjct: 115 VDVRLSIRGGELGKGPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRKI 174
Query: 196 KEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVS 255
KEK+SDHGRHMKGFNRLKVR+P T +VE +ADV ++ED + ++EIVR K+F+MPPLTV
Sbjct: 175 KEKDSDHGRHMKGFNRLKVRDPETPLVEEEADVVPQKEDGDLINEIVRTKYFDMPPLTVP 234
Query: 256 EAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSS 315
EA+EQLENVDHDF+GFRNEETGEINI+YKRKAGGYG+IIPK NGK ++LEP+ V++
Sbjct: 235 EAVEQLENVDHDFFGFRNEETGEINILYKRKAGGYGLIIPKENGKTEELEPVVVKSDREP 294
Query: 316 S 316
S
Sbjct: 295 S 295
>gi|224134949|ref|XP_002321945.1| predicted protein [Populus trichocarpa]
gi|222868941|gb|EEF06072.1| predicted protein [Populus trichocarpa]
Length = 231
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/228 (81%), Positives = 212/228 (92%), Gaps = 1/228 (0%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK 149
MSWDGPLSSVKLIIQGK+LEL+DTVK HVE+KVGKAV K SHLVR VDVRLSVRGGE GK
Sbjct: 1 MSWDGPLSSVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELGK 60
Query: 150 GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
GPRIRRCEVTLFTK+HGVVRAEEDAET++ASIDLVSSIIQRKLRKIK+KESDHGRHMKGF
Sbjct: 61 GPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHMKGF 120
Query: 210 NRLKVREPVTQ-VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
NRLKVREP+ Q VVE+DAD S++ED+++++E+VR K+F+MPPLTVSEAIEQLE+V HDF
Sbjct: 121 NRLKVREPMHQVVVEDDADEVSQQEDEDYIEEVVRTKYFDMPPLTVSEAIEQLEHVHHDF 180
Query: 269 YGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 316
YGFR+EETGEINI+YKRKAGGYG+IIPKGNG+A++LEPL VE A S
Sbjct: 181 YGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPS 228
>gi|356516154|ref|XP_003526761.1| PREDICTED: 30S ribosomal protein 1, chloroplastic-like [Glycine
max]
Length = 291
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/318 (64%), Positives = 236/318 (74%), Gaps = 32/318 (10%)
Query: 1 MATLSTSFKL-STSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKT 59
MATL F ST RP SCYL S SSS S++ S++ + T
Sbjct: 1 MATL---FNFNSTLRP---SCYLPLSPSSSYPHFSNTLSTTFLGHIV------------T 42
Query: 60 LSYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVE 119
L Y ++ T + L RMSWDGPLSSVKLIIQGKNLELTD VK HVE
Sbjct: 43 LKYAAT------------STSNRGRSLSTRMSWDGPLSSVKLIIQGKNLELTDAVKQHVE 90
Query: 120 EKVGKAVLKHSHLVREVDVRLSVRGG-EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178
+KVGKAV KHSHLVREVDVRLS+RGG EFG+GPR RRCEVTLFTK+HGVVRAEEDAE+ Y
Sbjct: 91 DKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTY 150
Query: 179 ASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFV 238
SIDLVSSIIQRKLRKIKEK SDHGRHMKGFNRLKVREPV Q+ + ++ S E++ +
Sbjct: 151 GSIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVEQLPMEEDEILSPREEEESI 210
Query: 239 DEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGN 298
DE+VR K+F+MPPLTV+EAIEQLENVDHDFYGFRNEETGEINIVYKRK GGYG+IIPKG+
Sbjct: 211 DEVVRTKYFDMPPLTVAEAIEQLENVDHDFYGFRNEETGEINIVYKRKEGGYGLIIPKGD 270
Query: 299 GKAKKLEPLEVETASSSS 316
G+A+KLE + +E A SS
Sbjct: 271 GEAEKLESVVLEPAIESS 288
>gi|302143982|emb|CBI23087.3| unnamed protein product [Vitis vinifera]
Length = 230
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/227 (79%), Positives = 207/227 (91%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK 149
MSWDGPLSSVKLI+QGKNLELTDTV++HVEEKVGKAV KHSHLVREVDVRLS+RGGE GK
Sbjct: 1 MSWDGPLSSVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSHLVREVDVRLSIRGGELGK 60
Query: 150 GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
GP+IRRCEVTLFTKKHGVVRAEE AET+Y SID+VSSIIQRKLRKIKEK+SDHGRHMKGF
Sbjct: 61 GPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRKIKEKDSDHGRHMKGF 120
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFY 269
NRLKVR+P T +VE +ADV ++ED + ++EIVR K+F+MPPLTV EA+EQLENVDHDF+
Sbjct: 121 NRLKVRDPETPLVEEEADVVPQKEDGDLINEIVRTKYFDMPPLTVPEAVEQLENVDHDFF 180
Query: 270 GFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 316
GFRNEETGEINI+YKRKAGGYG+IIPK NGK ++LEP+ V++ S
Sbjct: 181 GFRNEETGEINILYKRKAGGYGLIIPKENGKTEELEPVVVKSDREPS 227
>gi|10177849|dbj|BAB11201.1| unnamed protein product [Arabidopsis thaliana]
Length = 365
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/237 (78%), Positives = 208/237 (87%), Gaps = 6/237 (2%)
Query: 86 LPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG 145
L V+MSWDGPL+SVKLIIQGKNLEL++ +K HVEEKVGK+V KHSHLVREVDVRLSVRGG
Sbjct: 126 LAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSVRGG 185
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKEK+SDHGRH
Sbjct: 186 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRH 245
Query: 206 MKGFNRLKVREPVTQ-VVEN-----DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIE 259
MKGFNRLKVREPV + VVE+ D+ V EEE+D+ + EIVR K FEMPPLTV+EA+E
Sbjct: 246 MKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPPLTVAEAVE 305
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 316
QLE V HDFYGF+NEETGEINIVYKRK GGYG+IIPK +GKA+K+EPL E + S
Sbjct: 306 QLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLNEHS 362
>gi|363808026|ref|NP_001241953.1| uncharacterized protein LOC100784915 [Glycine max]
gi|255634767|gb|ACU17745.1| unknown [Glycine max]
Length = 291
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/234 (77%), Positives = 206/234 (88%), Gaps = 1/234 (0%)
Query: 84 KPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR 143
+ L MSWDGPLSSVKL IQGKNLELTD VK HVE+KVGKAV KHSHLVREVDVRLS+R
Sbjct: 55 RSLSAHMSWDGPLSSVKLTIQGKNLELTDAVKQHVEDKVGKAVQKHSHLVREVDVRLSIR 114
Query: 144 GG-EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH 202
GG EFG+GPR RRCEVTLFTK+HGVVRAEEDAE+ Y SIDLVSSIIQRKLRKIKEK SDH
Sbjct: 115 GGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRKIKEKVSDH 174
Query: 203 GRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLE 262
GRHMKGFNRLKVREPV Q+ + ++ S +E++ +DE+VR K+F+MPPLTV+EAIEQLE
Sbjct: 175 GRHMKGFNRLKVREPVEQLPVEEDEILSPQEEEESIDEVVRTKYFDMPPLTVAEAIEQLE 234
Query: 263 NVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 316
NVDHDFYGFRNEETGEINIVYKRK GGYG+I+PKG+G+A+KLEP+ +E A SS
Sbjct: 235 NVDHDFYGFRNEETGEINIVYKRKEGGYGLIVPKGDGEAEKLEPVVLEPAIESS 288
>gi|18420800|ref|NP_568447.1| putative 30S ribosomal protein [Arabidopsis thaliana]
gi|13877771|gb|AAK43963.1|AF370148_1 unknown protein [Arabidopsis thaliana]
gi|29824163|gb|AAP04042.1| unknown protein [Arabidopsis thaliana]
gi|332005933|gb|AED93316.1| putative 30S ribosomal protein [Arabidopsis thaliana]
Length = 308
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/237 (78%), Positives = 208/237 (87%), Gaps = 6/237 (2%)
Query: 86 LPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG 145
L V+MSWDGPL+SVKLIIQGKNLEL++ +K HVEEKVGK+V KHSHLVREVDVRLSVRGG
Sbjct: 69 LAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSVRGG 128
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKEK+SDHGRH
Sbjct: 129 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRH 188
Query: 206 MKGFNRLKVREPVTQ-VVEN-----DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIE 259
MKGFNRLKVREPV + VVE+ D+ V EEE+D+ + EIVR K FEMPPLTV+EA+E
Sbjct: 189 MKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPPLTVAEAVE 248
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 316
QLE V HDFYGF+NEETGEINIVYKRK GGYG+IIPK +GKA+K+EPL E + S
Sbjct: 249 QLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLNEHS 305
>gi|449459188|ref|XP_004147328.1| PREDICTED: ribosome-binding factor PSRP1, chloroplastic-like
[Cucumis sativus]
Length = 310
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 202/315 (64%), Positives = 235/315 (74%), Gaps = 17/315 (5%)
Query: 1 MATLSTSFKLSTSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTL 60
MATL++S + + L S S S SSS+ S +S S + K L
Sbjct: 1 MATLTSSMQAN----------LLSDHSLSPPFHSSSTVSYFPASFSLHFSALK---VHAL 47
Query: 61 SYNSS-FFGP---FKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKN 116
S N+S FF F I + + +RM+WDGPLSSVKLI+QGKNLELT+ VK
Sbjct: 48 SSNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKK 107
Query: 117 HVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 176
HVEEKVGKAV KHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET
Sbjct: 108 HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 167
Query: 177 VYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDN 236
V+ASIDLVSSIIQRKLRKIKEK+SD GRH+KGF+R KVREP VVE++ + +E+
Sbjct: 168 VFASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGE 227
Query: 237 FVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
+DEIVR K+F+MPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKRK GGYG+IIPK
Sbjct: 228 VIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 287
Query: 297 GNGKAKKLEPLEVET 311
NG A+KLEP+ +E
Sbjct: 288 ENGTAEKLEPVTIEA 302
>gi|350539988|ref|NP_001233834.1| chloroplast-specific ribosomal protein [Solanum lycopersicum]
gi|51457950|gb|AAU03364.1| chloroplast-specific ribosomal protein [Solanum lycopersicum]
Length = 311
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/264 (70%), Positives = 216/264 (81%), Gaps = 9/264 (3%)
Query: 56 LAKTLSYNSSFF--GPFKQITVMRPTKVH-TKPLPVRMSWDGPLSSVKLIIQGKNLELTD 112
L+ TLS +S F FK + P + TK VRMSWDGPLSSVKLI+QGKNLELT
Sbjct: 39 LSLTLSSTNSRFLNSAFKMNEINVPVRNRVTKSFGVRMSWDGPLSSVKLILQGKNLELTP 98
Query: 113 TVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 172
VK++VEEK+GKAV KHSHL REVDVRLSVRGGE GKGP+IRRCEVTLFTKKHGV+RAEE
Sbjct: 99 AVKDYVEEKLGKAVQKHSHLAREVDVRLSVRGGELGKGPKIRRCEVTLFTKKHGVIRAEE 158
Query: 173 DAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEE 232
D E++Y SID+VSSIIQRKLRKIKEK+SD GRHMKGF+RLKVR+P +V+ D + S+E
Sbjct: 159 DGESIYGSIDMVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVRDPEALLVQEDLETLSQE 218
Query: 233 ED------DNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRK 286
E+ D FV E+VR K F+MPPL+V+EAIEQLENVDHDFYGFRNEETGEINIVY+RK
Sbjct: 219 EEVEDDKSDGFVTEVVRKKSFDMPPLSVNEAIEQLENVDHDFYGFRNEETGEINIVYRRK 278
Query: 287 AGGYGVIIPKGNGKAKKLEPLEVE 310
GGYG+IIPK +GK +KLEPLEVE
Sbjct: 279 EGGYGLIIPKEDGKTEKLEPLEVE 302
>gi|258611172|gb|ACV83721.1| chloroplast ribosomal protein [Solanum tuberosum]
Length = 280
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/258 (71%), Positives = 212/258 (82%), Gaps = 9/258 (3%)
Query: 61 SYNSSFFG-PFKQITVMRPTKVHTKP-LPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHV 118
S NS F FK+ + P + K VRMSWDGPLSSVKLI+QGKNLELT VK++V
Sbjct: 17 SSNSGFLNSAFKKNEINVPVRNRVKXSFGVRMSWDGPLSSVKLILQGKNLELTPAVKDYV 76
Query: 119 EEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178
EEK+GKAV KHSHL REVDVRLSVRGGE GKGP+IRRCEVTLFTKKHGV+RAEEDAE++Y
Sbjct: 77 EEKLGKAVQKHSHLAREVDVRLSVRGGELGKGPKIRRCEVTLFTKKHGVIRAEEDAESIY 136
Query: 179 ASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEED---- 234
SID+VSSIIQRKLRKIKEK+SDHGRHMKGF+RLKVR+P +V+ D + +EE+
Sbjct: 137 GSIDMVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVRDPEVLLVQEDLETLPQEEEVEDD 196
Query: 235 ---DNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYG 291
D FV E+VR K F+MPPL+V+EAIEQLENVDHDFYGFRNEETGEINIVY+RK GGYG
Sbjct: 197 DKSDGFVTEVVRKKSFDMPPLSVNEAIEQLENVDHDFYGFRNEETGEINIVYRRKEGGYG 256
Query: 292 VIIPKGNGKAKKLEPLEV 309
+IIPK +GK +KLEPLEV
Sbjct: 257 LIIPKEDGKTEKLEPLEV 274
>gi|449526335|ref|XP_004170169.1| PREDICTED: LOW QUALITY PROTEIN: ribosome-binding factor PSRP1,
chloroplastic-like [Cucumis sativus]
Length = 310
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/315 (63%), Positives = 234/315 (74%), Gaps = 17/315 (5%)
Query: 1 MATLSTSFKLSTSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTL 60
MATL++S + + L S S S SSS+ S +S S + K L
Sbjct: 1 MATLTSSMQAN----------LLSDHSLSPPFHSSSTVSYFPASFSLHFSALK---VHAL 47
Query: 61 SYNSS-FFGP---FKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKN 116
S N+S FF F I + + +RM+WDGPLSSVKLI+QGKNLELT+ VK
Sbjct: 48 SSNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKK 107
Query: 117 HVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 176
HVEEKVGKAV KHSHLVREVDVRLSVRGG FGKGPRIRRCEVTLFTKKHGVVRAEEDAET
Sbjct: 108 HVEEKVGKAVQKHSHLVREVDVRLSVRGGXFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 167
Query: 177 VYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDN 236
V+ASIDLVSSIIQRKLRKIKEK+SD GRH+KGF+R KVREP VVE++ + +E+
Sbjct: 168 VFASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGE 227
Query: 237 FVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
+DEIVR K+F+MPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKRK GGYG+IIPK
Sbjct: 228 VIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 287
Query: 297 GNGKAKKLEPLEVET 311
NG A+KLEP+ +E
Sbjct: 288 ENGTAEKLEPVTIEA 302
>gi|297808465|ref|XP_002872116.1| hypothetical protein ARALYDRAFT_489312 [Arabidopsis lyrata subsp.
lyrata]
gi|297317953|gb|EFH48375.1| hypothetical protein ARALYDRAFT_489312 [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/237 (78%), Positives = 208/237 (87%), Gaps = 6/237 (2%)
Query: 86 LPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG 145
L V+MSWDGPL+SVKLIIQGKNLEL++ +K HVEEKVGK+V KHSHLVREVDVRLSVRGG
Sbjct: 69 LAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSVRGG 128
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKEK+SDHGRH
Sbjct: 129 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRH 188
Query: 206 MKGFNRLKVREPVTQ-VVEN-----DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIE 259
MKGFNRLKVREPV + VVE+ D+ + EEE+D+ + EIVR K FEMPPLTV+EA+E
Sbjct: 189 MKGFNRLKVREPVIEPVVEDVEDSTDSSLGEEEEEDDLIKEIVRTKTFEMPPLTVAEAVE 248
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 316
QLE V HDFYGF+NEETGEINIVYKRK GGYG+IIPK +GKA+K+EPL E + S
Sbjct: 249 QLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLNEHS 305
>gi|170131|gb|AAA34039.1| ribosomal protein 30S subunit [Spinacia oleracea]
Length = 302
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 167/237 (70%), Positives = 202/237 (85%), Gaps = 11/237 (4%)
Query: 84 KPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR 143
KP V MSWDGPLSSVKLI+QG+NLE++D V++HVE+KVGK+V KHSHLVREVDVRLS R
Sbjct: 60 KPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSAR 119
Query: 144 GGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG 203
GG+ KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+K SDHG
Sbjct: 120 GGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHG 179
Query: 204 RHMKGFNRLKVREP---------VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTV 254
RHMKGFNR KVR+P V + VE+ A EDD+F++E+VR K+F+MPPLT+
Sbjct: 180 RHMKGFNRSKVRDPEPVRITREEVLEEVES-APAPVSVEDDDFIEEVVRTKYFDMPPLTI 238
Query: 255 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVET 311
+EA+EQLENVDHDFY FRNEETG+INI+YKRK GGYG+IIPK +GK +KLE L V+T
Sbjct: 239 TEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK-DGKTEKLESLPVQT 294
>gi|134034|sp|P19954.2|PRSP1_SPIOL RecName: Full=Ribosome-binding factor PSRP1, chloroplastic;
AltName: Full=30S ribosomal protein 1; AltName:
Full=CS-S5; Short=CS5; AltName: Full=Plastid-specific
30S ribosomal protein 1; Short=PSRP-1; AltName:
Full=Ribosomal protein 1; AltName: Full=S22; Flags:
Precursor
gi|12316|emb|CAA41960.1| chloroplast ribosomal protein S22 [Spinacia oleracea]
gi|18031|emb|CAA33403.1| spinach S22 r-protein [Spinacia oleracea]
Length = 302
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 167/237 (70%), Positives = 202/237 (85%), Gaps = 11/237 (4%)
Query: 84 KPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR 143
KP V MSWDGPLSSVKLI+QG+NLE++D V++HVE+KVGK+V KHSHLVREVDVRLS R
Sbjct: 60 KPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSAR 119
Query: 144 GGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG 203
GG+ KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+K SDHG
Sbjct: 120 GGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHG 179
Query: 204 RHMKGFNRLKVREP---------VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTV 254
RHMKGFNR KVR+P V + VE+ A EDD+F++E+VR K+F+MPPLT+
Sbjct: 180 RHMKGFNRSKVRDPEPVRITREEVLEEVES-APAPVSVEDDDFIEEVVRTKYFDMPPLTI 238
Query: 255 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVET 311
+EA+EQLENVDHDFY FRNEETG+INI+YKRK GGYG+IIPK +GK +KLE L V+T
Sbjct: 239 TEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK-DGKTEKLESLPVQT 294
>gi|357464199|ref|XP_003602381.1| 30S ribosomal protein [Medicago truncatula]
gi|355491429|gb|AES72632.1| 30S ribosomal protein [Medicago truncatula]
Length = 313
Score = 340 bits (873), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 170/232 (73%), Positives = 198/232 (85%), Gaps = 3/232 (1%)
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG-E 146
VRMSWDGPLSSVKLIIQGKN++L D VK HVEEKVG+AV KHS+LVREVDVRLS RGG E
Sbjct: 79 VRMSWDGPLSSVKLIIQGKNMQLNDAVKQHVEEKVGRAVQKHSYLVREVDVRLSTRGGGE 138
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
FG+GPR RRCEVTLFTK+HGVVRAEE AET YASIDLVSS+IQRKLRKIKEKE+DHGRHM
Sbjct: 139 FGRGPRTRRCEVTLFTKRHGVVRAEEHAETTYASIDLVSSVIQRKLRKIKEKETDHGRHM 198
Query: 207 KGFNRLKVREPVTQV-VENDADVQSEE-EDDNFVDEIVRMKFFEMPPLTVSEAIEQLENV 264
KG NRLK RE V + E++ ++ ++ E++ ++E+VR K+F+MPPLTV EAI+QLE V
Sbjct: 199 KGSNRLKFREAVLPLPTEDETEISPQKEEEEELIEEVVRTKYFDMPPLTVFEAIDQLEMV 258
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 316
HDFY FRNEE+GE+NIVYKRK GGYG+IIPKGNG+A KLEP+ VE A S
Sbjct: 259 AHDFYAFRNEESGEVNIVYKRKEGGYGLIIPKGNGEADKLEPIVVEPAKEPS 310
>gi|388502796|gb|AFK39464.1| unknown [Medicago truncatula]
Length = 353
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 169/232 (72%), Positives = 197/232 (84%), Gaps = 3/232 (1%)
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG-E 146
VRMSWDGPLSSVKLIIQGKN++L D VK HVEEKVG+AV KHS+LVRE DVRLS RGG E
Sbjct: 119 VRMSWDGPLSSVKLIIQGKNMQLNDAVKQHVEEKVGRAVQKHSYLVREADVRLSTRGGGE 178
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
FG+GPR RRCEVTLFTK+HGVVRAEE AET YASIDLVSS+IQRKLRKIKEKE+DHGRHM
Sbjct: 179 FGRGPRTRRCEVTLFTKRHGVVRAEEHAETTYASIDLVSSVIQRKLRKIKEKETDHGRHM 238
Query: 207 KGFNRLKVREPVTQV-VENDADVQSEE-EDDNFVDEIVRMKFFEMPPLTVSEAIEQLENV 264
KG NRLK RE V + E++ ++ ++ E++ ++E+VR K+F+MPPLTV EAI+QLE V
Sbjct: 239 KGSNRLKFREAVLPLPTEDETEISPQKEEEEELIEEVVRTKYFDMPPLTVFEAIDQLEMV 298
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 316
HDFY FRNEE+GE+NIVYKRK GGYG+IIPKGNG+A KLEP+ VE A S
Sbjct: 299 AHDFYAFRNEESGEVNIVYKRKEGGYGLIIPKGNGEADKLEPIVVEPAKEPS 350
>gi|148907338|gb|ABR16805.1| unknown [Picea sitchensis]
Length = 321
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 155/297 (52%), Positives = 202/297 (68%), Gaps = 20/297 (6%)
Query: 22 LSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTL------SYNSSFFG-PFKQIT 74
L ++ S + ++ SSS+ + +P P KS L + S+NSS G +
Sbjct: 4 LVCTTGQSGFLTCTALSSSNGEAYTPAAVPLKSSLLSRVTPTILSSFNSSIQGHGLRWKF 63
Query: 75 VMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR 134
+ P ++ W GPLSSV+LIIQGKN +LTD VK ++EEKVG AV KH++LVR
Sbjct: 64 SVCPIVTSSRGQINCTLWSGPLSSVRLIIQGKNFQLTDAVKAYIEEKVGIAVQKHANLVR 123
Query: 135 EVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK 194
EVDVRLS+RGGE GKGP+IRRCEVTLFTKKHGVVRAEE+AET+YASID+VS II+RKLRK
Sbjct: 124 EVDVRLSIRGGEVGKGPKIRRCEVTLFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRK 183
Query: 195 IKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEED-------------DNFVDEI 241
IKEK+ HGR K + K+ E ++ VV + + + +E D D+ DE+
Sbjct: 184 IKEKDGGHGRPSKMRKQPKLGELLSTVVMDVKETRDKELDDLADVEEMRYEKIDDLSDEV 243
Query: 242 VRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGN 298
VR K+FEMPP++ EA+EQL NVDHDFY FRN E+GE+N++YKRK GGYG+I+PK N
Sbjct: 244 VRTKYFEMPPMSPEEALEQLMNVDHDFYAFRNMESGEVNVLYKRKHGGYGLIVPKNN 300
>gi|218194143|gb|EEC76570.1| hypothetical protein OsI_14401 [Oryza sativa Indica Group]
gi|222626202|gb|EEE60334.1| hypothetical protein OsJ_13433 [Oryza sativa Japonica Group]
Length = 301
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 141/247 (57%), Positives = 181/247 (73%), Gaps = 22/247 (8%)
Query: 78 PTKVHTKPL-----------PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAV 126
P H +PL VRMSWDGPLSSV+LI+QG+N++L + VK H+EEK G+AV
Sbjct: 41 PAAAHPQPLLAAESRRSSAVSVRMSWDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAV 100
Query: 127 LKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSS 186
KHS LV+EVDVRLS RGGE +GP+I RCE+TLFTK+HGV+RAEEDAE+ YASIDL SS
Sbjct: 101 AKHSQLVKEVDVRLSARGGELSRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASS 160
Query: 187 IIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSE----------EEDDN 236
II+RKLRKIKEKE+D RH+KG P + + ND D Q++ E++D
Sbjct: 161 IIKRKLRKIKEKETD-VRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLEEAVGAEDEDT 219
Query: 237 FVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
+ ++VR K FEMPPL+V EA+EQL NVDH+FY FR+E+TGE+N++YKRK GG+G+I+PK
Sbjct: 220 VLTKVVRTKVFEMPPLSVEEAMEQLVNVDHNFYAFRDEKTGEMNVLYKRKEGGFGLIVPK 279
Query: 297 GNGKAKK 303
G+G K
Sbjct: 280 GDGHLHK 286
>gi|115456699|ref|NP_001051950.1| Os03g0856500 [Oryza sativa Japonica Group]
gi|30102988|gb|AAP21401.1| putative ribosomal protein [Oryza sativa Japonica Group]
gi|41393260|gb|AAS01983.1| putative ribosomal protein [Oryza sativa Japonica Group]
gi|108712193|gb|ABF99988.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
gi|113550421|dbj|BAF13864.1| Os03g0856500 [Oryza sativa Japonica Group]
gi|215692514|dbj|BAG87934.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737784|dbj|BAG96914.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 309
Score = 290 bits (741), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 141/247 (57%), Positives = 181/247 (73%), Gaps = 22/247 (8%)
Query: 78 PTKVHTKPL-----------PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAV 126
P H +PL VRMSWDGPLSSV+LI+QG+N++L + VK H+EEK G+AV
Sbjct: 49 PAAAHPQPLLAAESRRSSAVSVRMSWDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAV 108
Query: 127 LKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSS 186
KHS LV+EVDVRLS RGGE +GP+I RCE+TLFTK+HGV+RAEEDAE+ YASIDL SS
Sbjct: 109 AKHSQLVKEVDVRLSARGGELSRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASS 168
Query: 187 IIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSE----------EEDDN 236
II+RKLRKIKEKE+D RH+KG P + + ND D Q++ E++D
Sbjct: 169 IIKRKLRKIKEKETD-VRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLEEAVGAEDEDT 227
Query: 237 FVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
+ ++VR K FEMPPL+V EA+EQL NVDH+FY FR+E+TGE+N++YKRK GG+G+I+PK
Sbjct: 228 VLTKVVRTKVFEMPPLSVEEAMEQLVNVDHNFYAFRDEKTGEMNVLYKRKEGGFGLIVPK 287
Query: 297 GNGKAKK 303
G+G K
Sbjct: 288 GDGHLHK 294
>gi|388510614|gb|AFK43373.1| unknown [Medicago truncatula]
Length = 273
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 141/193 (73%), Positives = 165/193 (85%), Gaps = 3/193 (1%)
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG-E 146
VRMSWDGPLSSVKLIIQGKN++L D K HVEEKVG+AV KHS+LVREVDVRLS RGG E
Sbjct: 79 VRMSWDGPLSSVKLIIQGKNMQLNDAAKQHVEEKVGRAVQKHSYLVREVDVRLSTRGGGE 138
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
FG+GPR RRCEVTLFTK+HGVVRAEE AET YASIDLVSS+IQRKLRKIKEKE+DHGRHM
Sbjct: 139 FGRGPRTRRCEVTLFTKRHGVVRAEEHAETTYASIDLVSSVIQRKLRKIKEKETDHGRHM 198
Query: 207 KGFNRLKVREPVTQV-VENDADVQSEE-EDDNFVDEIVRMKFFEMPPLTVSEAIEQLENV 264
KG NRLK RE V + E++ ++ ++ E++ ++E+VR K+F+MPPLTV EAI+QLE V
Sbjct: 199 KGSNRLKFREAVLPLPTEDETEISPQKEEEEELIEEVVRTKYFDMPPLTVFEAIDQLEMV 258
Query: 265 DHDFYGFRNEETG 277
HDFY FRNEE+G
Sbjct: 259 AHDFYAFRNEESG 271
>gi|118489730|gb|ABK96666.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 268
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/219 (67%), Positives = 173/219 (78%), Gaps = 14/219 (6%)
Query: 36 SSSSSSSSSVSPFVTPRKSQLAKTLSYNSSFFGP---FKQITVMRPTKVHTKPLP----- 87
+S++ + S S FV K+Q+ K S F G F +I R TK+ PL
Sbjct: 20 TSTTPTPSLASSFVNSTKTQVPKVF-LKSRFLGKNVNFAEIR--RKTKI---PLSHGGSS 73
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEF 147
+RMSWDGPLSSVKLIIQGK+LEL+DTVK HVE+KVGKAV K SHLVR VDVRLSVRGGE
Sbjct: 74 IRMSWDGPLSSVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGEL 133
Query: 148 GKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK 207
GKGPRIRRCEVTLFTK+HGVVRAEEDAET+YASIDL SSIIQRKLRKIK+KESDHGRHMK
Sbjct: 134 GKGPRIRRCEVTLFTKRHGVVRAEEDAETIYASIDLASSIIQRKLRKIKDKESDHGRHMK 193
Query: 208 GFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKF 246
GFNRLKVREP+ QVVE+DAD S++ED+++++E+ + F
Sbjct: 194 GFNRLKVREPMHQVVEDDADEVSQQEDEDYIEEVSFLNF 232
>gi|226528966|ref|NP_001151285.1| plastid-specific 30S ribosomal protein 1 [Zea mays]
gi|195645526|gb|ACG42231.1| plastid-specific 30S ribosomal protein 1 [Zea mays]
Length = 309
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/276 (50%), Positives = 192/276 (69%), Gaps = 8/276 (2%)
Query: 33 SSSSSSSSSSSSVSPFVTPRKSQLAKTLSYN-SSFFG---PFKQITVMRPTKVHTKPLPV 88
++++ S S++++ + R+S A +LS S F G + T+ + V
Sbjct: 2 AATAMCPSPSAAITRHIHARRSCAAASLSLRRSGFLGRVVLAAVPVAVDATRRRRVSVSV 61
Query: 89 RMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFG 148
RM+WDGPLSSV+LI+Q +N +L++ +K H+E+KVG+AV KH HLVREVDVRLS RGGE G
Sbjct: 62 RMAWDGPLSSVRLIMQSRNAKLSEKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELG 121
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
+GP+ RCE+TLFTK+HGV+RAEEDAE+ YASIDL ++I++RKLRKIKEKE++ R
Sbjct: 122 RGPKTSRCEITLFTKRHGVLRAEEDAESTYASIDLAAAIVKRKLRKIKEKETEVRRGGDA 181
Query: 209 FNRLKVREPVTQVVENDAD----VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENV 264
P + +AD E+++ + ++VR K FEMPPLTV EA+EQLENV
Sbjct: 182 DGVWDEIPPADLLPPAEADDLEAAVGAEDEETVLAKVVRTKVFEMPPLTVEEALEQLENV 241
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGK 300
DHDFY FR+E TG++NI+Y+RK GGYG+IIPK +GK
Sbjct: 242 DHDFYCFRDEATGQVNILYRRKEGGYGLIIPKNDGK 277
>gi|414874019|tpg|DAA52576.1| TPA: plastid-specific 30S ribosomal protein 1 [Zea mays]
Length = 307
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 139/276 (50%), Positives = 191/276 (69%), Gaps = 8/276 (2%)
Query: 33 SSSSSSSSSSSSVSPFVTPRKSQLAKTLSYN-SSFFG---PFKQITVMRPTKVHTKPLPV 88
++++ S S++++ + R+S A +LS S F G + T+ + V
Sbjct: 2 AATAMCPSPSAAITRHIHARRSCAAASLSLRRSGFLGRVVLAAVPVAVDATRRRRVSVSV 61
Query: 89 RMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFG 148
RM+WDGPLSSV+LI+Q +N +L++ +K H+E+KVG+AV KH HLVREVDVRLS RGGE G
Sbjct: 62 RMAWDGPLSSVRLIMQSRNAKLSEKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELG 121
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
+GP+ RCE+TLFTK+HGV+RAEEDAE+ YASIDL ++I++RKLRKIKEKE++ R
Sbjct: 122 RGPKTSRCEITLFTKRHGVLRAEEDAESTYASIDLAAAIVKRKLRKIKEKETEVRRGGDA 181
Query: 209 FNRLKVREPVTQVVENDAD----VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENV 264
P + +AD E++ + ++VR K FEMPPLTV EA+EQLENV
Sbjct: 182 DGVWDEIPPADLLPPAEADDLEAAVGAEDEQTVLAKVVRTKVFEMPPLTVEEALEQLENV 241
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGK 300
DHDFY FR+E TG++NI+Y+RK GGYG+IIPK +GK
Sbjct: 242 DHDFYCFRDEATGQVNILYRRKEGGYGLIIPKNDGK 277
>gi|242037341|ref|XP_002466065.1| hypothetical protein SORBIDRAFT_01g000590 [Sorghum bicolor]
gi|241919919|gb|EER93063.1| hypothetical protein SORBIDRAFT_01g000590 [Sorghum bicolor]
Length = 310
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 142/280 (50%), Positives = 194/280 (69%), Gaps = 17/280 (6%)
Query: 34 SSSSSSSSSSSVSPFVTPRKSQLAKTLSYNSSFFGPFKQITVMRPTKVHTK--------P 85
+++ S S S++++ PR S A +++ S F G + + + P V
Sbjct: 2 ATAMSPSPSAAIARPSHPR-SCAAASVALRSGFLG--RGLAAVVPVAVDDPRCRLRRRVS 58
Query: 86 LPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG 145
VRM+WDGPLSSV+LI+QG+N++L+D +K H+E+KVG+AV KH HLVREVDVRLS RGG
Sbjct: 59 FSVRMAWDGPLSSVRLIMQGRNVKLSDKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGG 118
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
E G+GP+ RCE+TLF+K+HGV+RAEEDAE+ YASIDL ++II+RKLRKIKEKE++ R
Sbjct: 119 ELGRGPKTSRCEITLFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRKIKEKETEVRRD 178
Query: 206 MKGFNRLKVREPV----TQVVEND--ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIE 259
G E + +VE D A E++ V ++VR K FEMPPLTV EA+E
Sbjct: 179 GDGGAGGAWEEELPLLDDDLVEADELAAAVGAEDEQTVVAKVVRTKVFEMPPLTVEEALE 238
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNG 299
QL+NV H+FY FR+E TG++NI+Y+RK GGYG+IIPK +G
Sbjct: 239 QLDNVGHNFYCFRDEATGQVNILYRRKEGGYGLIIPKEDG 278
>gi|357115740|ref|XP_003559644.1| PREDICTED: 30S ribosomal protein 1, chloroplastic-like
[Brachypodium distachyon]
Length = 290
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/254 (52%), Positives = 179/254 (70%), Gaps = 10/254 (3%)
Query: 59 TLSYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHV 118
+ S F G T +R + + V+ +WDGPLSS +LI+QG+N++LT+ +K H+
Sbjct: 26 CCALRSGFLGRALTATSLRRRPAASVSVSVQAAWDGPLSSARLIMQGRNVKLTEKLKEHI 85
Query: 119 EEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178
EEKVG+AV HSHLVREVDVRLS RGGE GKGP+ RCE+TLFTK+HGVVRAEE+ E+ Y
Sbjct: 86 EEKVGRAVSNHSHLVREVDVRLSARGGELGKGPKASRCEITLFTKRHGVVRAEEEEESSY 145
Query: 179 ASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT---------QVVENDADVQ 229
ASID+ +++++RKLRKIKEKE+D RH+KG + + + +V
Sbjct: 146 ASIDVAAAVVKRKLRKIKEKETD-VRHLKGSKEWQTAAAAAFSESDVDEEEDEDELVEVI 204
Query: 230 SEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGG 289
E+++ + ++VR K FEM PLTV EA+EQLENVDHDFY FRNE+TGE+NI+YKRK GG
Sbjct: 205 GAEDEETVLTKVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGG 264
Query: 290 YGVIIPKGNGKAKK 303
+G+IIPK +G K
Sbjct: 265 FGLIIPKQDGHVDK 278
>gi|168045979|ref|XP_001775453.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673256|gb|EDQ59782.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 297
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 149/298 (50%), Positives = 196/298 (65%), Gaps = 30/298 (10%)
Query: 23 SSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTLSYNSSFFG-------PFKQITV 75
++S + SS+ S+++ + +S +S +A + S NSSF G F + V
Sbjct: 10 AASVACCSSARLPQSNAAGRAGLSSSFLRLESTVAVS-SLNSSFHGHACLDVSNFGKSGV 68
Query: 76 -MRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR 134
M+ +V T M+W G L+ V+L+IQGK+LELTD +K +VEEKVG AV S LV+
Sbjct: 69 EMQKGRVTTC-----MAWGGTLAGVRLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVK 123
Query: 135 EVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK 194
EVDVR+SVRGGE G+G R++RCEVTLFTKKHGVVRAEE+AE++YASID VS +I RKLRK
Sbjct: 124 EVDVRMSVRGGETGRGERLQRCEVTLFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRK 183
Query: 195 IKEKESDHGRHMKGFNRLKVREPVTQVVEN---DADVQSEEEDDNFVDEIVRMKFFEMPP 251
IKEK+ HGR K R + +V+ N D D E + D+ DE+VR K+FEM P
Sbjct: 184 IKEKDGGHGRPAKYSPR------IGEVLSNEVVDLDPILERKPDDLPDEVVRTKYFEMRP 237
Query: 252 LTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK-------GNGKAK 302
+ EA+EQL NV HDFY FRN E+GEINI+YKR GGYG+I+P+ GNG +K
Sbjct: 238 MKPLEALEQLVNVGHDFYAFRNVESGEINILYKRTHGGYGIIVPRNDESWEAGNGASK 295
>gi|326502706|dbj|BAJ98981.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 301
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 170/225 (75%), Gaps = 14/225 (6%)
Query: 92 WDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP 151
WDGPLSS +LI+QG+N++LT+ +K H+E+KVG+AV H+HLVREVDVRLS RGG+ KGP
Sbjct: 66 WDGPLSSARLIMQGRNVKLTEKLKEHIEDKVGRAVSNHAHLVREVDVRLSARGGDLSKGP 125
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK---- 207
++ RCEVTLFT++HGVVRAEE+ E+ YASID +++++RKLRKIKEKE+D RH+K
Sbjct: 126 KLSRCEVTLFTRRHGVVRAEEEEESSYASIDAAAAVVKRKLRKIKEKETD-VRHLKGTKE 184
Query: 208 ---------GFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAI 258
GF+ ++ + ++ +V E+++ + ++VR K FEM PLTV EA+
Sbjct: 185 WQAADADATGFSDVEEESELELEEDDLVEVIGAEDEETVLTKVVRTKVFEMAPLTVDEAL 244
Query: 259 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKK 303
EQLENVDHDFY FRNE+TGE+NI+YKRK GG+G+IIPK +G K
Sbjct: 245 EQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIPKQDGHVDK 289
>gi|168011837|ref|XP_001758609.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690219|gb|EDQ76587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 221
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 129/220 (58%), Positives = 163/220 (74%), Gaps = 8/220 (3%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK 149
M+W G L+ V+L+IQGK+LELTD +K +VEEKVG AV S LV+EVDVR+SVRGGE G+
Sbjct: 1 MAWGGALAGVRLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRGGETGR 60
Query: 150 GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
G +++RCEVTLFTKKHGVVRAEE+AE++YASID VS +I RKLRKIKEK+ HGR K
Sbjct: 61 GGKLQRCEVTLFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKDGGHGRPTKSR 120
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFY 269
+ ++ E ++ V D D + D+ DEIVR K+FEM P+ EA+EQL NV HDFY
Sbjct: 121 HSPRIGEVLSDEV-VDLDPILGRKPDDLPDEIVRTKYFEMRPMKPLEALEQLVNVGHDFY 179
Query: 270 GFRNEETGEINIVYKRKAGGYGVIIPK-------GNGKAK 302
FRN E+GEINI+YKR GGYG+I+P+ GNG +K
Sbjct: 180 AFRNVESGEINILYKRTHGGYGIIVPRNEEAWEAGNGVSK 219
>gi|151935415|gb|ABS18746.1| protein kinase [Oryza sativa Japonica Group]
Length = 321
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/256 (50%), Positives = 169/256 (66%), Gaps = 28/256 (10%)
Query: 78 PTKVHTKPL-----------PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAV 126
P H +PL VRMSWDGPLSSV+LI+QG+N++L + VK H+EEK G+AV
Sbjct: 49 PAAAHPQPLLAAESRRSSAVSVRMSWDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAV 108
Query: 127 LKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSS 186
KHS LV+EVDVRLS RGGE +GP+I RCE+TLFTK+HGV+RAEEDAE+ YASIDL SS
Sbjct: 109 AKHSQLVKEVDVRLSARGGELSRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASS 168
Query: 187 IIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSE----------EEDDN 236
II+RKLRKIKEKE+D RH+KG P + + ND D Q++ E++D
Sbjct: 169 IIKRKLRKIKEKETDV-RHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLEEAVGAEDEDT 227
Query: 237 FVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
+ +VR K FEMPPL+ EA+EQL N DH F+ + G +++ G +G I+P+
Sbjct: 228 VLTRVVRTKVFEMPPLSGEEAMEQLGNGDHTFHALPRRKNGGDEPPVQKEGGRFGPIVPQ 287
Query: 297 GNGKAKKLEPLEVETA 312
G+G PL+ ET+
Sbjct: 288 GDG------PLQRETS 297
>gi|255640826|gb|ACU20696.1| unknown [Glycine max]
Length = 208
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/238 (59%), Positives = 159/238 (66%), Gaps = 32/238 (13%)
Query: 1 MATLSTSFKL-STSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKT 59
MATL F ST RP SCYL S SSS S++ S++ + T
Sbjct: 1 MATL---FNFNSTLRP---SCYLPLSPSSSYPHFSNTLSTTFLGHIV------------T 42
Query: 60 LSYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVE 119
L Y ++ T + L RMSWDGPLSSVKLIIQGKNLELTD VK HVE
Sbjct: 43 LKYAAT------------STSNRGRSLSTRMSWDGPLSSVKLIIQGKNLELTDAVKRHVE 90
Query: 120 EKVGKAVLKHSHLVREVDVRLSVRGG-EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178
+KVGKAV KHSHLVREVDVRLS+RGG EFG+GPR RRCEVTLFTK+HGVVRAEEDAE+ Y
Sbjct: 91 DKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTY 150
Query: 179 ASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDN 236
SIDLVSSIIQRKLRKIKEK SDHGRHMKGFNRLK+ P + D + EE+ N
Sbjct: 151 GSIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKLGSPWSITYGRDEILSPREEEIN 208
>gi|302788097|ref|XP_002975818.1| hypothetical protein SELMODRAFT_175159 [Selaginella moellendorffii]
gi|300156819|gb|EFJ23447.1| hypothetical protein SELMODRAFT_175159 [Selaginella moellendorffii]
Length = 259
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/214 (53%), Positives = 159/214 (74%), Gaps = 16/214 (7%)
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEF 147
+ M+W G L+S++L+IQGK+LELT+ +K +VE+KVGKAV H++LV EVDVRLSVRGGE
Sbjct: 43 ISMAWAGSLASIRLVIQGKHLELTEALKAYVEDKVGKAVHNHAYLVMEVDVRLSVRGGES 102
Query: 148 GKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK 207
G+G ++++CEVT+FTKKHGVVRAEE +++Y++ID VS ++ RKLRKIKE++ HGR +
Sbjct: 103 GRGQKLQKCEVTMFTKKHGVVRAEEATDSMYSAIDRVSDVVARKLRKIKERDG-HGRRLP 161
Query: 208 G-----FNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLE 262
+R P T V E+ +F DEIVR K F+MPPL +++A++ +
Sbjct: 162 SHVGEILSRESSSAPPTPAV----------EEPDFPDEIVRTKIFDMPPLKINDAMDHMA 211
Query: 263 NVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
NV HDFY FRN E+GE+NI+YKRK GGYG+IIP+
Sbjct: 212 NVGHDFYAFRNAESGEVNILYKRKEGGYGIIIPR 245
>gi|302783995|ref|XP_002973770.1| hypothetical protein SELMODRAFT_25079 [Selaginella moellendorffii]
gi|300158808|gb|EFJ25430.1| hypothetical protein SELMODRAFT_25079 [Selaginella moellendorffii]
Length = 205
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/215 (53%), Positives = 159/215 (73%), Gaps = 17/215 (7%)
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEF 147
+ M+W G L+S++L+IQGK+LELT+ +K +VE+KVGKAV H++LV EVDVRLSVRGGE
Sbjct: 1 ISMAWAGSLASIRLVIQGKHLELTEALKAYVEDKVGKAVHNHAYLVMEVDVRLSVRGGES 60
Query: 148 GKGPRIRRCE-VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
G+G ++++CE VT+FTKKHGVVRAEE +++Y++ID VS ++ RKLRKIKEK+ HGR +
Sbjct: 61 GRGQKLQKCEVVTMFTKKHGVVRAEEATDSMYSAIDRVSDVVARKLRKIKEKDG-HGRRL 119
Query: 207 KG-----FNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQL 261
+R P T V E+ +F DEIVR K F+MPPL +++A++ +
Sbjct: 120 PSHVGEILSRESSTAPPTPAV----------EEPDFPDEIVRTKIFDMPPLKINDAMDHM 169
Query: 262 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
N+ HDFY FRN E+GE+NI+YKRK GGYG+IIP+
Sbjct: 170 ANIGHDFYAFRNAESGEVNILYKRKEGGYGIIIPR 204
>gi|227070|prf||1613445A ribosomal protein CS-S5
Length = 321
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 106/134 (79%), Positives = 124/134 (92%)
Query: 84 KPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR 143
KP V MSWDGPLSSVKLI+QG+NLE++D V++HVE+KVGK+V KHSHLVREVDVRLS R
Sbjct: 60 KPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSSR 119
Query: 144 GGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG 203
GG+ KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+K SDHG
Sbjct: 120 GGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHG 179
Query: 204 RHMKGFNRLKVREP 217
RHMKGFNR KVR+P
Sbjct: 180 RHMKGFNRSKVRDP 193
>gi|108712194|gb|ABF99989.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
Length = 241
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 123/168 (73%), Gaps = 12/168 (7%)
Query: 78 PTKVHTKPL-----------PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAV 126
P H +PL VRMSWDGPLSSV+LI+QG+N++L + VK H+EEK G+AV
Sbjct: 49 PAAAHPQPLLAAESRRSSAVSVRMSWDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAV 108
Query: 127 LKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSS 186
KHS LV+EVDVRLS RGGE +GP+I RCE+TLFTK+HGV+RAEEDAE+ YASIDL SS
Sbjct: 109 AKHSQLVKEVDVRLSARGGELSRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASS 168
Query: 187 IIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEED 234
II+RKLRKIKEKE+D RH+KG P + + ND D Q++ +D
Sbjct: 169 IIKRKLRKIKEKETD-VRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKD 215
>gi|224105233|ref|XP_002333842.1| predicted protein [Populus trichocarpa]
gi|222838715|gb|EEE77080.1| predicted protein [Populus trichocarpa]
Length = 127
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 92/135 (68%), Positives = 108/135 (80%), Gaps = 16/135 (11%)
Query: 108 LELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGV 167
++LTDTVK HVE+KVGKAV K SHLVREVD RLSVRGGE GKGPRIR+C +HGV
Sbjct: 1 MQLTDTVKEHVEDKVGKAVQKFSHLVREVDARLSVRGGELGKGPRIRKC-------RHGV 53
Query: 168 VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDAD 227
VRAEED+ET+YA+IDLV SIIQ KLRK+KE ESDHGRHMKG NRLK+R +DAD
Sbjct: 54 VRAEEDSETIYATIDLVLSIIQSKLRKMKE-ESDHGRHMKGLNRLKIR--------DDAD 104
Query: 228 VQSEEEDDNFVDEIV 242
S +EDD+++DE+V
Sbjct: 105 AVSRKEDDDYLDELV 119
>gi|443313524|ref|ZP_21043135.1| ribosomal subunit interface protein [Synechocystis sp. PCC 7509]
gi|442776467|gb|ELR86749.1| ribosomal subunit interface protein [Synechocystis sp. PCC 7509]
Length = 215
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 132/217 (60%), Gaps = 36/217 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+ELTD ++ +V +K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIELTDAIREYVHQKIEKAVNHFQSLTTEVDVHLSV-----ARNPRISSKQS 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E++YASIDLV+ I R+LRK KE+ R
Sbjct: 56 AEVTIYANG-SVIRAEESSESLYASIDLVADKIARQLRKYKER----------------R 98
Query: 216 EPVTQVVENDADVQSEEE----DDNFVD-------EIVRMKFFEMPPLTVSEAIEQLENV 264
+ VE +V SEE+ D D E+VR K+F MPP+TVSEA+EQL+NV
Sbjct: 99 QANKASVETTVEVDSEEQIPLVSDLIGDRTPQLPAEVVRTKYFAMPPMTVSEALEQLQNV 158
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKA 301
DHDFY F N E+GEIN++Y+R GGYGVI P+ NG A
Sbjct: 159 DHDFYMFCNAESGEINVIYERNHGGYGVIQPRNNGHA 195
>gi|119509863|ref|ZP_01629006.1| Sigma 54 modulation protein/ribosomal protein S30EA [Nodularia
spumigena CCY9414]
gi|119465472|gb|EAW46366.1| Sigma 54 modulation protein/ribosomal protein S30EA [Nodularia
spumigena CCY9414]
Length = 213
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/203 (46%), Positives = 130/203 (64%), Gaps = 16/203 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNEVDVHLSV-----ARNPRITTKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+F V+RAEE +E +YASIDLV+ I R+LRK KE+ D + N++ V
Sbjct: 56 AEVTIFANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERLQDQKTNAPPTNQVLVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EPV AD+ + + +E+VR K+F MPP+TV+EA EQL+ V HDFY F N E
Sbjct: 115 EPVA------ADLIGDRTPE-LPNEVVRTKYFSMPPMTVAEATEQLQLVGHDFYMFHNAE 167
Query: 276 TGEINIVYKRKAGGYGVIIPKGN 298
TGEIN++Y+R GGYGVI P+ N
Sbjct: 168 TGEINVIYERNHGGYGVIQPRHN 190
>gi|428318443|ref|YP_007116325.1| SSU ribosomal protein S30P [Oscillatoria nigro-viridis PCC 7112]
gi|428242123|gb|AFZ07909.1| SSU ribosomal protein S30P [Oscillatoria nigro-viridis PCC 7112]
Length = 217
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 141/226 (62%), Gaps = 21/226 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD ++ +V +KV KAV +L EVD+ LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDAIREYVNQKVEKAVSHFQNLTTEVDIHLSV-----ARNPRINPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE E++YASIDLV+ I R+LRK KEK D+ H V
Sbjct: 56 AEVTIYANG-SVIRAEESTESLYASIDLVADKIARQLRKFKEKRHDNKTHSSVKTVTAVE 114
Query: 216 E-PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
E PV AD+ + + E+VR K+F MPP+TV +A+EQL+ +DHDFY FRN
Sbjct: 115 EHPVV------ADLIGDRTPE-LPAEVVRTKYFAMPPMTVQQALEQLQIIDHDFYMFRNA 167
Query: 275 ETGEINIVYKRKA-GGYGVIIPK---GNGKAKKLEPLEVETASSSS 316
ET EIN++Y+RK+ GGYGVI P+ GNG +K + E T+ SS
Sbjct: 168 ETDEINVLYERKSHGGYGVIQPRHSNGNGNSKNGKTAESATSEKSS 213
>gi|428224035|ref|YP_007108132.1| SSU ribosomal protein S30P,sigma 54 modulation protein
[Geitlerinema sp. PCC 7407]
gi|427983936|gb|AFY65080.1| SSU ribosomal protein S30P,sigma 54 modulation protein
[Geitlerinema sp. PCC 7407]
Length = 215
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 130/210 (61%), Gaps = 26/210 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD ++ +V +K+ KAV +L EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDAIREYVHQKIEKAVNHFQNLTMEVDVHLSV-----ARNPRINPKQS 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ ++RAEE +E +YASIDLV+ I R+LRK KEK ++H KG
Sbjct: 56 AEVTIYANG-TIIRAEESSENLYASIDLVADKIARQLRKYKEKRNNH----KG------- 103
Query: 216 EPVTQVVENDADVQSEEED------DNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFY 269
+P +V AD D E++R K+F MPP+TV EA+EQLE VDHDFY
Sbjct: 104 QPSARVETGTADASFSVPDLIGDRAPELPPEVIRTKYFAMPPMTVEEALEQLELVDHDFY 163
Query: 270 GFRNEETGEINIVYKRKAGGYGVIIPKGNG 299
FRN ETGEIN++Y+R GGYG++ P G G
Sbjct: 164 MFRNAETGEINVIYERNHGGYGLLQPHGEG 193
>gi|220909826|ref|YP_002485137.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Cyanothece
sp. PCC 7425]
gi|219866437|gb|ACL46776.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 7425]
Length = 209
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 130/206 (63%), Gaps = 18/206 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++++V++K+ KA +L E+DV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIRDYVQQKIEKAANHFQNLTTEIDVHLSV-----ARNPRINPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++T V+RAEE +E +YASIDLVS I R+LRK KE+ D +H + V
Sbjct: 56 AEVTIYTNG-SVIRAEESSENLYASIDLVSDKIARQLRKFKERRQD--KHSRSKEEPVVS 112
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
P+ + D + EE +VR K+F MPP+T+ EA+EQLE VDHDFY FRN E
Sbjct: 113 VPLVTDLTGDRTPELPEE-------VVRTKYFAMPPMTLREALEQLELVDHDFYMFRNAE 165
Query: 276 TGEINIVYKRKAGGYGVIIPKGNGKA 301
TGEIN++Y+R GGYGVI P+ A
Sbjct: 166 TGEINVIYERNHGGYGVIQPRNGSSA 191
>gi|427728357|ref|YP_007074594.1| ribosomal subunit interface protein [Nostoc sp. PCC 7524]
gi|427364276|gb|AFY46997.1| ribosomal subunit interface protein [Nostoc sp. PCC 7524]
Length = 217
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 131/203 (64%), Gaps = 16/203 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSV-----ARNPRINPKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ D + N + V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKISRQLRKYKERRQDKKTQAQPTNEVVVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+PV AD+ + + +E+VR K+F MPP+T++EA+EQL+ V HDFY FRN E
Sbjct: 115 QPVV------ADLIGDRTPE-LPEEVVRTKYFSMPPMTLAEALEQLQLVGHDFYMFRNAE 167
Query: 276 TGEINIVYKRKAGGYGVIIPKGN 298
TGEIN++Y+R GGYGVI P+ N
Sbjct: 168 TGEINVIYERNHGGYGVIQPRNN 190
>gi|434392591|ref|YP_007127538.1| SSU ribosomal protein S30P;sigma 54 modulation protein [Gloeocapsa
sp. PCC 7428]
gi|428264432|gb|AFZ30378.1| SSU ribosomal protein S30P;sigma 54 modulation protein [Gloeocapsa
sp. PCC 7428]
Length = 211
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 134/219 (61%), Gaps = 21/219 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV +L EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDGIREYVHQKIEKAVNHFQNLTNEVDVHLSV-----ARNPRINDRQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASID+V+ I RKLRK KEK D + + V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDMVADKIARKLRKYKEKRHDKKTQVPEKTSIAV- 113
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EP V + D E +E+VR K+F MPP+T++EA+EQL+ VDHDFY FRN E
Sbjct: 114 EPAPVVEDLIGDRTPE-----LPEEVVRTKYFAMPPMTITEALEQLQLVDHDFYMFRNAE 168
Query: 276 TGEINIVYKRKAGGYGVIIPKG------NGKAKKLEPLE 308
TGEIN++Y+R GGYGVI P+ NG A+ P E
Sbjct: 169 TGEINVIYERNHGGYGVIQPRNSNGNTKNGNAESTSPAE 207
>gi|440684186|ref|YP_007158981.1| SSU ribosomal protein S30P [Anabaena cylindrica PCC 7122]
gi|428681305|gb|AFZ60071.1| SSU ribosomal protein S30P [Anabaena cylindrica PCC 7122]
Length = 211
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 130/205 (63%), Gaps = 18/205 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNEVDVHLSV-----ARNPRISTRQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ DH N +
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDHKTQPIPTNEVVAP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EPVT ++ D E E+VR K+F MPP+T++EA EQL+ V HDFY FRN E
Sbjct: 115 EPVTDLI---GDRTPE-----LPGEVVRTKYFSMPPMTLAEAQEQLQLVGHDFYMFRNAE 166
Query: 276 TGEINIVYKRKAGGYGVIIPK-GNG 299
TGEIN++Y+R GG+GVI P+ GNG
Sbjct: 167 TGEINVIYERNHGGFGVIQPRNGNG 191
>gi|254410321|ref|ZP_05024100.1| Sigma 54 modulation protein / S30EA ribosomal protein
[Coleofasciculus chthonoplastes PCC 7420]
gi|196182527|gb|EDX77512.1| Sigma 54 modulation protein / S30EA ribosomal protein
[Coleofasciculus chthonoplastes PCC 7420]
Length = 215
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 134/208 (64%), Gaps = 23/208 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD+++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDSIREYVNQKIEKAVNHFQNMTTEVDVHLSV-----ARNPRINTKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ K V+RA+E +E +YASIDLV+ IQR+LRK KEK+ +
Sbjct: 56 AEVTIYANK-TVIRAQESSEDLYASIDLVADKIQRQLRKYKEKQQKKTQ----------T 104
Query: 216 EPVTQVVENDADVQSEEEDD---NFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
+P T V ++A V + D E+VRMK+F MPP+T+ EA EQL+ VDHDFY FR
Sbjct: 105 QPKTGAVIHEAPVVEDLIGDRTPELPTEVVRMKYFAMPPMTIEEATEQLQLVDHDFYMFR 164
Query: 273 NEETGEINIVYKRKAGGYGVIIPK-GNG 299
N +T EIN++Y+R GGYGVI P+ GNG
Sbjct: 165 NAKTDEINVIYERNHGGYGVIQPRNGNG 192
>gi|384245406|gb|EIE18900.1| hypothetical protein COCSUDRAFT_31477 [Coccomyxa subellipsoidea
C-169]
Length = 274
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 150/228 (65%), Gaps = 7/228 (3%)
Query: 74 TVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLV 133
+V +P + H L + S+VK+I QG+++E+T +K +VE+K+ K V+K+ +
Sbjct: 46 SVHQPHRQHRNTLKISAVASAQPSTVKIITQGRHVEVTPALKKYVEDKLSKVVVKYEAAI 105
Query: 134 REVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLR 193
+EVDVRLS GG+ KGP+ ++ E+T++T ++G+VRAE+ E++YASIDLVS + RKLR
Sbjct: 106 KEVDVRLSASGGDASKGPKKQKTEITIYTLRNGIVRAEDVEESMYASIDLVSDKVARKLR 165
Query: 194 KIKEKESDHGRHMKGFNRLKVREPVTQVVENDAD-----VQSEEEDDNFVDEIVRMKFFE 248
K+KEK GR G + E + Q + ++A+ + +++E F E+VR K F
Sbjct: 166 KMKEKAISRGR-WAGPGGPRGGETIGQSLPSEAEDLVDKLPTDQEAAAF-PEVVRTKTFV 223
Query: 249 MPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
+ P+++ +A+EQ+E V H F+ FR++ + ++ ++YKRK GYGVI+P+
Sbjct: 224 LEPMSLEDALEQVEQVGHPFFVFRDKSSKQVRVLYKRKTRGYGVIVPQ 271
>gi|434403339|ref|YP_007146224.1| SSU ribosomal protein S30P [Cylindrospermum stagnale PCC 7417]
gi|428257594|gb|AFZ23544.1| SSU ribosomal protein S30P [Cylindrospermum stagnale PCC 7417]
Length = 215
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 128/205 (62%), Gaps = 17/205 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNEVDVHLSV-----ARNPRISTKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ D N V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDQKTQPIPTNEAIVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EPV + D + DE+VR K+F MPP+T++EA EQL+ V HDFY FRN E
Sbjct: 115 EPVATDLIGDRTPE-------LPDEVVRTKYFSMPPMTLAEAQEQLQMVGHDFYMFRNSE 167
Query: 276 TGEINIVYKRKAGGYGVIIPK-GNG 299
TGEIN++Y+R GGYGVI P+ GNG
Sbjct: 168 TGEINVIYERNHGGYGVIQPRNGNG 192
>gi|428308720|ref|YP_007119697.1| 30S ribosomal protein S30 [Microcoleus sp. PCC 7113]
gi|428250332|gb|AFZ16291.1| SSU ribosomal protein S30P [Microcoleus sp. PCC 7113]
Length = 216
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/208 (48%), Positives = 137/208 (65%), Gaps = 22/208 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDAIREYVHQKIEKAVNHFQNMTTEVDVHLSV-----ARNPRINSKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ IQR+LRK KEK +H K ++ K
Sbjct: 56 AEVTIYANG-TVIRAQEGSEDLYASIDLVADKIQRQLRKYKEKL----QHKKTHDQPKTG 110
Query: 216 EPVTQV-VEND--ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
V QV V +D D +E D +VRMK+F MPP+T+ EA+EQL+ VDHDFY FR
Sbjct: 111 IVVEQVPVPDDLIGDRTAELPSD-----VVRMKYFAMPPMTMEEALEQLQLVDHDFYMFR 165
Query: 273 NEETGEINIVYKRKAGGYGVIIPK-GNG 299
N +TGEIN++Y+R GGYGVI P+ GNG
Sbjct: 166 NAKTGEINVIYERNHGGYGVIQPRNGNG 193
>gi|354568064|ref|ZP_08987230.1| sigma 54 modulation protein/ribosomal protein S30EA [Fischerella
sp. JSC-11]
gi|353541029|gb|EHC10499.1| sigma 54 modulation protein/ribosomal protein S30EA [Fischerella
sp. JSC-11]
Length = 219
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 137/223 (61%), Gaps = 19/223 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNEVDVHLSV-----ARNPRINPKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKV 214
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ D H + G +
Sbjct: 56 AEVTIYANG-NVIRAEESSENLYASIDLVADKIARQLRKYKERRHDKKTHAQTGIEGVVQ 114
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ VT ++ N A +E+VR K+F MPP+TV+EA+EQL+ V HDFY FRN
Sbjct: 115 QTVVTDLIGNRAP--------ELPEEVVRTKYFAMPPMTVTEALEQLQLVGHDFYMFRNS 166
Query: 275 ETGEINIVYKRKAGGYGVIIPKG-NGKAKKLEPLEVETASSSS 316
ETGEIN++Y+R GGYGVI P+ NG +TA +S+
Sbjct: 167 ETGEINVIYERNHGGYGVIQPRNSNGHINHTNGKNGKTAHTST 209
>gi|334119952|ref|ZP_08494036.1| sigma 54 modulation protein/ribosomal protein S30EA [Microcoleus
vaginatus FGP-2]
gi|333457593|gb|EGK86216.1| sigma 54 modulation protein/ribosomal protein S30EA [Microcoleus
vaginatus FGP-2]
Length = 217
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 102/226 (45%), Positives = 139/226 (61%), Gaps = 21/226 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD ++ +V +K+ KAV L EVD+ LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDAIREYVNQKLEKAVSHFQTLTTEVDIHLSV-----ARNPRINPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE E++YASIDLV+ I R+LRK KEK D+ V
Sbjct: 56 AEVTIYANG-SVIRAEESTESLYASIDLVADKIARQLRKFKEKRHDNKTQSSAKTVTVVD 114
Query: 216 E-PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
E PV AD+ + + E+VR K+F MPP+TV EA+EQL+ +DHDFY FRN
Sbjct: 115 EHPVV------ADLIGDRTPE-LPAEVVRTKYFAMPPMTVQEALEQLQIIDHDFYMFRNA 167
Query: 275 ETGEINIVYKRKA-GGYGVIIPK---GNGKAKKLEPLEVETASSSS 316
ETGEIN++Y+RK+ GYGVI P+ GNG +K + E T+ SS
Sbjct: 168 ETGEINVLYERKSHSGYGVIQPRHSNGNGNSKNGKTAESATSEKSS 213
>gi|428217228|ref|YP_007101693.1| SSU ribosomal protein S30P,sigma 54 modulation protein
[Pseudanabaena sp. PCC 7367]
gi|427989010|gb|AFY69265.1| SSU ribosomal protein S30P,sigma 54 modulation protein
[Pseudanabaena sp. PCC 7367]
Length = 192
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 129/204 (63%), Gaps = 18/204 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD + ++V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDAIHDYVSQKIDKAVSHFQNMTTEVDVHLSV-----ARNPRIAANQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I RKLRK KE++ NR V+
Sbjct: 56 AEVTIYANG-AVIRAEERSENLYASIDLVADKISRKLRKFKERKK---------NRNAVK 105
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
V V + V + +++VR K+F MPP++V EA+EQLE VDHDF+ FRN E
Sbjct: 106 TSVAVVEQAPLPVPQGDRQPTMPEKVVRNKYFNMPPMSVDEALEQLELVDHDFFVFRNLE 165
Query: 276 TGEINIVYKRKAGGYGVIIPKGNG 299
+ EIN+VY+R GG+GVI P GNG
Sbjct: 166 SNEINVVYERNHGGFGVIQPHGNG 189
>gi|282896861|ref|ZP_06304867.1| Sigma 54 modulation protein/ribosomal protein S30EA [Raphidiopsis
brookii D9]
gi|281198270|gb|EFA73160.1| Sigma 54 modulation protein/ribosomal protein S30EA [Raphidiopsis
brookii D9]
Length = 208
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 127/205 (61%), Gaps = 18/205 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+ L+I GKN+E+T ++ +V +K+ KAV ++ +VD+ LSV + PRI +
Sbjct: 1 MNLVIHGKNIEITGAIREYVHQKIEKAVSHFQNVTNQVDIHLSV-----ARNPRISTKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E++YASIDLV+ I R+LRK KE+ DH N V
Sbjct: 56 AEVTIYANG-SVIRAEESSESLYASIDLVADKIARQLRKYKERRQDHKTQPISTNEALVS 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EPVT ++ E+VR K+F MPP+TV++A EQL+ V HDFY FRN E
Sbjct: 115 EPVTDLIAG--------RTPELPGEVVRTKYFSMPPMTVAQAQEQLQLVGHDFYMFRNAE 166
Query: 276 TGEINIVYKRKAGGYGVIIPK-GNG 299
+GEIN++Y+R GGYGVI P+ GNG
Sbjct: 167 SGEINVIYERNHGGYGVIQPRNGNG 191
>gi|428207601|ref|YP_007091954.1| 30S ribosomal protein S30 [Chroococcidiopsis thermalis PCC 7203]
gi|428009522|gb|AFY88085.1| SSU ribosomal protein S30P [Chroococcidiopsis thermalis PCC 7203]
Length = 213
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 99/205 (48%), Positives = 129/205 (62%), Gaps = 18/205 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVNQKIEKAVNHFQTLTTEVDVHLSV-----ARNPRINPKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KEK D K L+
Sbjct: 56 AEVTIYANG-TVIRAEESSENLYASIDLVADKIARQLRKYKEKLQDKKTQPK--TSLEAV 112
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EP V ND E E+VR K+F MPP+T++EA+EQL+ VDHDFY FRN E
Sbjct: 113 EPP---VVNDLIGDRTPE---LPSEVVRTKYFAMPPMTLNEALEQLQLVDHDFYMFRNAE 166
Query: 276 TGEINIVYKRKAGGYGVIIPK-GNG 299
TGEIN++Y+R GGYGVI P+ GNG
Sbjct: 167 TGEINVIYERNHGGYGVIQPRNGNG 191
>gi|282898830|ref|ZP_06306817.1| Sigma 54 modulation protein/ribosomal protein S30EA
[Cylindrospermopsis raciborskii CS-505]
gi|281196357|gb|EFA71267.1| Sigma 54 modulation protein/ribosomal protein S30EA
[Cylindrospermopsis raciborskii CS-505]
Length = 208
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 128/205 (62%), Gaps = 18/205 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+ L+I GKN+E+TD ++ +V +K+ KAV ++ +VD+ LSV + PRI +
Sbjct: 1 MNLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNQVDIHLSV-----ARNPRISTKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E++YASIDLV+ I R+LRK KE+ +H N V
Sbjct: 56 AEVTIYANG-SVIRAEESSESLYASIDLVADKIARQLRKYKERRQEHKTQPIPTNEALVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EPVT ++ E+VR K+F MPP+T+++A EQL+ V HDFY FRN E
Sbjct: 115 EPVTDLIAG--------RTPELPGEVVRTKYFSMPPMTLAQAQEQLQLVGHDFYMFRNAE 166
Query: 276 TGEINIVYKRKAGGYGVIIPK-GNG 299
+GEIN++Y+R GGYGVI P+ GNG
Sbjct: 167 SGEINVIYERNHGGYGVIQPRNGNG 191
>gi|428214890|ref|YP_007088034.1| 30S ribosomal protein S30 [Oscillatoria acuminata PCC 6304]
gi|428003271|gb|AFY84114.1| SSU ribosomal protein S30P [Oscillatoria acuminata PCC 6304]
Length = 213
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 138/216 (63%), Gaps = 31/216 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR---IRR 155
+KL+I GKN+E+T+ ++ +V +KV KAV +L EVDV LSV K PR +
Sbjct: 1 MKLVIHGKNIEITEAIREYVNQKVEKAVSHFQNLTTEVDVHLSV-----AKNPRNNSKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+F ++RAEE +E +YASIDLV+ I R+LRK KEK RH + KV+
Sbjct: 56 AEVTIFANG-TIIRAEESSENLYASIDLVADKIARQLRKYKEK-----RHAQ-----KVQ 104
Query: 216 EPVTQVVENDADVQSEEEDDNFV--------DEIVRMKFFEMPPLTVSEAIEQLENVDHD 267
P T N+A ++ + ++ + +E+VR K+F MPP++V EA+EQL+ VDHD
Sbjct: 105 APDTL---NEALLEEQPLVEDLIGERTPELPEEVVRTKYFAMPPMSVLEALEQLQLVDHD 161
Query: 268 FYGFRNEETGEINIVYKRKAGGYGVIIPK-GNGKAK 302
FY FRN +TGEIN++Y+R GGYGV+ P+ GNG+ K
Sbjct: 162 FYMFRNADTGEINVIYERNHGGYGVLQPRNGNGQTK 197
>gi|298491755|ref|YP_003721932.1| sigma 54 modulation protein/ribosomal protein S30EA ['Nostoc
azollae' 0708]
gi|298233673|gb|ADI64809.1| sigma 54 modulation protein/ribosomal protein S30EA ['Nostoc
azollae' 0708]
Length = 214
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 129/215 (60%), Gaps = 21/215 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ +AV + EV+V LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIERAVNHFQSITNEVNVHLSV-----ARNPRISTKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ DH N V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDHKTQPIPTNEAVVA 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EPV AD + E+VR K+F MPP+T++EA EQL+ V HDFY FRN E
Sbjct: 115 EPV-------ADSLIGDRTPELPGEVVRTKYFPMPPMTLAEAQEQLQLVGHDFYMFRNAE 167
Query: 276 TGEINIVYKRKAGGYGVIIPKG-----NGKAKKLE 305
TGEIN++Y+R GGYGVI P+ NGK K +
Sbjct: 168 TGEINVIYERNHGGYGVIQPRNGNRHTNGKNGKTD 202
>gi|255087800|ref|XP_002505823.1| predicted protein [Micromonas sp. RCC299]
gi|226521093|gb|ACO67081.1| predicted protein [Micromonas sp. RCC299]
Length = 284
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 136/204 (66%), Gaps = 9/204 (4%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLK-HSHLVREVDVRLSVRGGEFGKGP--RI 153
+S K+I+QG++LE+TD+++ + EEK+ KAV H VREVDVR S RGG K P +
Sbjct: 78 ASTKVIVQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGGAL 137
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE-SDHGRHMKGFNRL 212
++ EVT++T+ +G++R+EE+A+ +YASID VS ++RKLRK+KEK+ S +H K +
Sbjct: 138 QKTEVTVYTR-NGIIRSEEEADDLYASIDAVSDKLERKLRKVKEKKISKRPKHNKNAPKA 196
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
+ V ++ D + E D DE+VR KF + TV EA E++EN+ H F+ FR
Sbjct: 197 QTDAIVEEMQAADEALADESMD---YDEVVREKFHPVRKCTVYEAAEEMENLGHTFFAFR 253
Query: 273 NEETG-EINIVYKRKAGGYGVIIP 295
N G E+N+VYKR AGGYGVI+P
Sbjct: 254 NVAQGNEVNVVYKRDAGGYGVIVP 277
>gi|427716053|ref|YP_007064047.1| 30S ribosomal protein S30 [Calothrix sp. PCC 7507]
gi|427348489|gb|AFY31213.1| SSU ribosomal protein S30P [Calothrix sp. PCC 7507]
Length = 221
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 128/203 (63%), Gaps = 16/203 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSV-----ARNPRINTRQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ D + V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDKITQSPPTTDVLVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EPV AD+ + + +E+VR K+F MPP+T++EA+EQL+ V HDFY F N E
Sbjct: 115 EPVA------ADLIGDRTPE-LPNEVVRTKYFSMPPMTLAEALEQLQLVGHDFYMFHNAE 167
Query: 276 TGEINIVYKRKAGGYGVIIPKGN 298
TGEIN++Y+R GGYGVI P+ N
Sbjct: 168 TGEINVIYERNHGGYGVIQPRQN 190
>gi|86609975|ref|YP_478737.1| ribosomal subunit interface protein [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558517|gb|ABD03474.1| ribosomal subunit interface protein [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 190
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 126/201 (62%), Gaps = 17/201 (8%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RRC 156
KL+IQGKN+E+TD ++++V+EK+ +AV + + EVDV LSV + PRI +
Sbjct: 3 KLVIQGKNVEITDAIRSYVQEKIERAVSHFAQITSEVDVNLSV-----ARNPRISASQSA 57
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG-RHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASID V+ + RKLRK KE+ H RH + +
Sbjct: 58 EVTVYANG-TVIRAEESSENLYASIDRVADKLARKLRKYKERNGIHRVRHTPKTSVAVAQ 116
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+PVT D + E E+VR K+F MPP+TV EA+ QLE VDHDFY FRN E
Sbjct: 117 QPVT-------DPLNTERQAELPAEVVRTKYFAMPPMTVQEALHQLELVDHDFYVFRNIE 169
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
GEIN++Y R GGYG+I P+
Sbjct: 170 NGEINVIYVRNHGGYGLIRPR 190
>gi|17230676|ref|NP_487224.1| light-repressed protein [Nostoc sp. PCC 7120]
gi|17132279|dbj|BAB74883.1| light-repressed protein [Nostoc sp. PCC 7120]
Length = 213
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 128/203 (63%), Gaps = 16/203 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSV-----ARNPRINTRQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE++ D + V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKISRQLRKYKERKQDQKTQAQPTTETIVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
E V AD+ + + +E+VR K+F MPP+TV+EA+EQL+ V HDFY F N E
Sbjct: 115 ETVV------ADLIGDRTPE-LPEEVVRTKYFSMPPMTVTEALEQLQLVGHDFYMFHNAE 167
Query: 276 TGEINIVYKRKAGGYGVIIPKGN 298
TGEIN++Y+R GGYGVI P+ N
Sbjct: 168 TGEINVIYERNHGGYGVIQPRNN 190
>gi|300869058|ref|ZP_07113660.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oscillatoria sp. PCC 6506]
gi|300332969|emb|CBN58856.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oscillatoria sp. PCC 6506]
Length = 215
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 126/202 (62%), Gaps = 17/202 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD ++ +V +K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDAIREYVNQKIDKAVNHFQTLTTEVDVHLSV-----ARNPRINTKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E++YASIDLV+ I R+LRK KEK D +
Sbjct: 56 AEVTIYANG-SVIRAEESSESLYASIDLVADKIARQLRKFKEKRQDKTHTNPKVGDVVAE 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EPV + D + E++R K+F MPP+T+ EA+EQL+ +DHDFY FRN E
Sbjct: 115 EPVVSDLIGDRTPE-------LPSEVLRSKYFAMPPMTMQEALEQLQVIDHDFYMFRNAE 167
Query: 276 TGEINIVYKRK-AGGYGVIIPK 296
TGEIN++Y+RK GGYGVI P+
Sbjct: 168 TGEINVIYERKHHGGYGVIQPR 189
>gi|409989363|ref|ZP_11272976.1| sigma 54 modulation protein / 30S ribosomal protein S30P
[Arthrospira platensis str. Paraca]
gi|291567386|dbj|BAI89658.1| light repressed protein [Arthrospira platensis NIES-39]
gi|409939776|gb|EKN80827.1| sigma 54 modulation protein / 30S ribosomal protein S30P
[Arthrospira platensis str. Paraca]
Length = 212
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 129/212 (60%), Gaps = 23/212 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKNLE+TD + +V++K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNLEITDAIHEYVQQKIAKAVSHFQQLTNEVDVHLSV-----ARNPRINPRQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ I R+LRK KEK + + +
Sbjct: 56 AEVTIYANG-TVIRAQESSENLYASIDLVADKIARQLRKYKEKRMAKQYQLPKTGEVVAQ 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+P+ + D V+ EE +VR K+F MPP+++ EA+EQL+ +DHDFY FRN E
Sbjct: 115 KPIVDDLIGDRTVKLPEE-------VVRTKYFAMPPMSIQEALEQLQLIDHDFYMFRNAE 167
Query: 276 TGEINIVYKR-KAGGYGVI------IPKGNGK 300
T EIN++Y+R GGYGVI +P NGK
Sbjct: 168 TDEINVIYQRSHHGGYGVIQPRNGSVPTSNGK 199
>gi|411118432|ref|ZP_11390813.1| SSU ribosomal protein S30P [Oscillatoriales cyanobacterium JSC-12]
gi|410712156|gb|EKQ69662.1| SSU ribosomal protein S30P [Oscillatoriales cyanobacterium JSC-12]
Length = 214
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 131/206 (63%), Gaps = 19/206 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD+++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDSIREYVNQKIEKAVNHFQTMITEVDVHLSV-----ARNPRINSKQV 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD-HGRHMKGFNRLKV 214
EVT++ VVRAEE +E +YASID+V+ I R+LRK KEK D + +K L
Sbjct: 56 AEVTIYVNG-SVVRAEEGSENLYASIDMVADKISRQLRKYKEKRYDKYHPSVKTAEVLSD 114
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ VT++ N ++VR K+F MPP++V EA+EQLE VDHDFY FRN
Sbjct: 115 QPVVTELPTNRTP--------ELPAQVVRTKYFAMPPMSVQEALEQLELVDHDFYVFRNA 166
Query: 275 ETGEINIVYKRKAGGYGVIIP-KGNG 299
ETGEIN+VY+R GGYGVI P + NG
Sbjct: 167 ETGEINVVYERNHGGYGVIQPRRSNG 192
>gi|209523036|ref|ZP_03271593.1| sigma 54 modulation protein/ribosomal protein S30EA [Arthrospira
maxima CS-328]
gi|376004092|ref|ZP_09781852.1| putative light repressed protein, LrtA-like [Arthrospira sp. PCC
8005]
gi|423062459|ref|ZP_17051249.1| sigma 54 modulation protein/ribosomal protein S30EA [Arthrospira
platensis C1]
gi|209496623|gb|EDZ96921.1| sigma 54 modulation protein/ribosomal protein S30EA [Arthrospira
maxima CS-328]
gi|375327530|emb|CCE17605.1| putative light repressed protein, LrtA-like [Arthrospira sp. PCC
8005]
gi|406716367|gb|EKD11518.1| sigma 54 modulation protein/ribosomal protein S30EA [Arthrospira
platensis C1]
Length = 212
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 128/205 (62%), Gaps = 18/205 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKNLE+TD + +V++K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNLEITDAIHEYVQQKIAKAVSHFQQLTNEVDVHLSV-----ARNPRINPRQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ I R+LRK KEK + + +
Sbjct: 56 AEVTIYANG-TVIRAQESSENLYASIDLVADKIARQLRKYKEKRMAKQYQLPKTGEVVAQ 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+P+ + D V+ EE +VR K+F MPP+++ EA+EQL+ +DHDFY FRN E
Sbjct: 115 KPIVDDLIGDRTVKLPEE-------VVRTKYFAMPPMSIQEALEQLQLIDHDFYMFRNAE 167
Query: 276 TGEINIVYKR-KAGGYGVIIPKGNG 299
T EIN++Y+R GGYGVI P+ NG
Sbjct: 168 TDEINVIYQRSHHGGYGVIQPR-NG 191
>gi|75910086|ref|YP_324382.1| 30S ribosomal protein S30P / sigma 54 modulation protein [Anabaena
variabilis ATCC 29413]
gi|75703811|gb|ABA23487.1| SSU ribosomal protein S30P [Anabaena variabilis ATCC 29413]
Length = 213
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 128/203 (63%), Gaps = 16/203 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSV-----ARNPRINTRQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE++ D + + +
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKISRQLRKYKERKQD--QKTQALPTTETI 112
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
P T V + D E +E+VR K+F MPP+TV+EA+EQL+ V HDFY F N E
Sbjct: 113 VPETVVADLIGDRTPE-----LPEEVVRTKYFSMPPMTVTEALEQLQLVGHDFYMFHNAE 167
Query: 276 TGEINIVYKRKAGGYGVIIPKGN 298
TGEIN++Y+R GGYGVI P+ N
Sbjct: 168 TGEINVIYERNHGGYGVIQPRNN 190
>gi|86607067|ref|YP_475830.1| ribosomal subunit interface protein [Synechococcus sp. JA-3-3Ab]
gi|86555609|gb|ABD00567.1| ribosomal subunit interface protein [Synechococcus sp. JA-3-3Ab]
Length = 191
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 126/200 (63%), Gaps = 17/200 (8%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RRC 156
KL+IQGKN+E+TD ++++V+EK+ +AV + + EVDV LSV + PRI +
Sbjct: 3 KLVIQGKNVEITDAIRSYVQEKIERAVKHFAQITSEVDVNLSV-----ARNPRISANQSA 57
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG-RHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASID V+ + RKLRK KE+ H RH + +
Sbjct: 58 EVTVYANG-TVIRAEESSENLYASIDRVADKLARKLRKYKERNGVHRIRHSPKTSVAVAQ 116
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+P+T D + E E+VR K+F MPP+TV EA+ QLE VDHDFY FRN E
Sbjct: 117 QPLT-------DPLNTERQAELPPEVVRTKYFAMPPMTVQEALHQLELVDHDFYVFRNIE 169
Query: 276 TGEINIVYKRKAGGYGVIIP 295
GEIN++Y RK GGYG+I P
Sbjct: 170 NGEINVIYVRKHGGYGLIRP 189
>gi|22298376|ref|NP_681623.1| light repressed protein A [Thermosynechococcus elongatus BP-1]
gi|22294555|dbj|BAC08385.1| lrtA [Thermosynechococcus elongatus BP-1]
Length = 209
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 129/198 (65%), Gaps = 12/198 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L+I GKN+++TD +++++ +K+ +A +++ EVDV LSV P+ + EV
Sbjct: 1 MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNVINEVDVHLSVARNR-STAPK-QTAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F V+RAEE +E +YASIDLV+ I RKLRK+KEK D R K N + E V
Sbjct: 59 TVFVNG-SVIRAEESSENLYASIDLVADKIARKLRKLKEKRQDKSR-AKDTNSVVEPEVV 116
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T +V D Q E+ +VRMK+F MPP+T+ EA+E LE VDHDFY FRN +TGE
Sbjct: 117 TDLV-GDRTPQLPEQ-------VVRMKYFAMPPMTIQEALEHLEMVDHDFYVFRNRDTGE 168
Query: 279 INIVYKRKAGGYGVIIPK 296
IN+VY+R GGYGVI P+
Sbjct: 169 INVVYERNHGGYGVIQPR 186
>gi|443317350|ref|ZP_21046763.1| ribosomal subunit interface protein [Leptolyngbya sp. PCC 6406]
gi|442783039|gb|ELR92966.1| ribosomal subunit interface protein [Leptolyngbya sp. PCC 6406]
Length = 218
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 132/221 (59%), Gaps = 40/221 (18%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+T+ ++++VE+K+ KAV HL EVDV LSV + RI +
Sbjct: 1 MKLVIQGKNIEITEAIQDYVEQKISKAVSHFKHLTNEVDVNLSV-----ARNHRITPKQS 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVTL+ VVRAEE +E +YASIDLV++ I R+LR+ KEK D + F+ +K
Sbjct: 56 AEVTLYING-AVVRAEESSENLYASIDLVANKITRQLRRYKEKRQD-----RNFSPVK-- 107
Query: 216 EPVTQVVENDADVQSEEEDDN-----------FVDEIVRMKFFEMPPLTVSEAIEQLENV 264
NDA + E N + +VR K+F MPP++V +A+E LE V
Sbjct: 108 -------PNDALITPETPTTNVSEVLKSKAPQLPEAVVRTKYFAMPPMSVEDALEHLELV 160
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPK------GNG 299
DHDFY F N ETGEIN++Y+R GGYG++ P+ GNG
Sbjct: 161 DHDFYMFLNGETGEINVIYERNHGGYGLLQPRQAEQMNGNG 201
>gi|414077869|ref|YP_006997187.1| sigma 54 modulation protein/ribosomal protein S30EA [Anabaena sp.
90]
gi|413971285|gb|AFW95374.1| sigma 54 modulation protein/ribosomal protein S30EA [Anabaena sp.
90]
Length = 211
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 126/201 (62%), Gaps = 16/201 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ +VDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNQVDVHLSV-----ARNPRISTKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E++YASIDLV+ I R+LRK KEK DH N +
Sbjct: 56 AEVTIYANG-SVIRAEESSESLYASIDLVADKIARQLRKYKEKRQDHKTQPISTNEVVAP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
E V AD+ + + E+VR K+F MPP+T++EA EQL+ V HDFY F N E
Sbjct: 115 ETVA------ADLIGDRTAE-LPQEVVRTKYFSMPPMTLAEAQEQLQLVGHDFYMFHNAE 167
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
+GEIN++Y+R GGYGVI P+
Sbjct: 168 SGEINVIYERNHGGYGVIQPR 188
>gi|427706899|ref|YP_007049276.1| 30S ribosomal protein S30 [Nostoc sp. PCC 7107]
gi|427359404|gb|AFY42126.1| SSU ribosomal protein S30P [Nostoc sp. PCC 7107]
Length = 216
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 129/203 (63%), Gaps = 16/203 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+T+ ++++V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITEAIRDYVHQKIEKAVSHFQNITNEVDVHLSV-----ARNPRINPKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ D H + + V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDKKTHAQSTTEVVVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EPV + D + E+VR K+F MPP+T++EA+EQL+ V HDFY FRN E
Sbjct: 115 EPVVPDLIGDRTPE-------LPSEVVRTKYFSMPPMTLAEALEQLQLVGHDFYMFRNAE 167
Query: 276 TGEINIVYKRKAGGYGVIIPKGN 298
TGEIN++Y+R GGYGVI P+ N
Sbjct: 168 TGEINVIYERNHGGYGVIQPRNN 190
>gi|254422790|ref|ZP_05036508.1| Sigma 54 modulation protein / S30EA ribosomal protein
[Synechococcus sp. PCC 7335]
gi|196190279|gb|EDX85243.1| Sigma 54 modulation protein / S30EA ribosomal protein
[Synechococcus sp. PCC 7335]
Length = 224
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 129/215 (60%), Gaps = 24/215 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD +++HV +K+ KA L+ +VDV LSV+ PRI +
Sbjct: 1 MKLVIQGKNIEITDAIRSHVHQKIEKATAHFQTLINKVDVCLSVQNN-----PRIAPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+F + VVRAEE +E++YASID+V+ + R+LRK KEK D + VR
Sbjct: 56 AEVTVFLN-NVVVRAEESSESLYASIDMVTDKLTRQLRKYKEKRRDQ-------DHATVR 107
Query: 216 EPVTQVVENDADVQSEEEDDNFV--------DEIVRMKFFEMPPLTVSEAIEQLENVDHD 267
N D+ S D + V D +VR K+F MPP+TV A+E LE V HD
Sbjct: 108 PTDVDATINAPDITSHNADISEVLNHQPKLPDTVVRSKYFAMPPMTVQTALENLELVGHD 167
Query: 268 FYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAK 302
FY FRN ETGEIN++Y+R GYG++ P+ N + K
Sbjct: 168 FYMFRNVETGEINVIYERNHKGYGLLQPRQNHQTK 202
>gi|186683153|ref|YP_001866349.1| sigma 54 modulation protein/ribosomal protein S30EA [Nostoc
punctiforme PCC 73102]
gi|186465605|gb|ACC81406.1| sigma 54 modulation protein/ribosomal protein S30EA [Nostoc
punctiforme PCC 73102]
Length = 214
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 128/207 (61%), Gaps = 22/207 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I KN+E+TD ++ +V +K+ KA + EVDV LSV + PRI +
Sbjct: 1 MKLVIHSKNIEITDAIREYVHQKIEKAASHFQSITNEVDVHLSV-----ARNPRINTRQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ D K +
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDQ----------KTQ 104
Query: 216 EPVTQVVENDADVQSEEEDDN--FVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
T+VV ++ V D +E+VR K+F MPP+T++EA+EQL+ V HDFY FRN
Sbjct: 105 SQPTEVVVAESVVPDLIGDRTPELPNEVVRTKYFSMPPMTLAEALEQLQLVGHDFYMFRN 164
Query: 274 EETGEINIVYKRKAGGYGVIIPK-GNG 299
ETGEIN++Y+R GGYGVI P+ GNG
Sbjct: 165 SETGEINVIYERNHGGYGVIHPRNGNG 191
>gi|257061006|ref|YP_003138894.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 8802]
gi|256591172|gb|ACV02059.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 8802]
Length = 205
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 137/214 (64%), Gaps = 16/214 (7%)
Query: 92 WDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP 151
D + S+KL+IQG N+++T+++ ++V+EK+ KAV + +VDV LSV +
Sbjct: 1 MDNGVLSMKLLIQGNNIDVTESIHDYVQEKLEKAVKHFQSITTKVDVHLSV-----ARNA 55
Query: 152 RI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
RI + EVT++ V+RA+E +E++YASIDLVS I R+LRK KEK ++ K
Sbjct: 56 RITNKHKAEVTVYANG-TVIRAQEGSESLYASIDLVSDKIARQLRKYKEKLNNK----KA 110
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
N +KV E VT + D+ + + E++RMK+F MPP+T+ EA+ QLE VDHDF
Sbjct: 111 PNPVKVGE-VTTATAIEGDLIGDRTPE-LPAEVIRMKYFAMPPMTIDEALHQLELVDHDF 168
Query: 269 YGFRNEETGEINIVYKRKAGGYGVIIPKG-NGKA 301
Y FRN++T EIN++Y+R GGYGVI P G NG
Sbjct: 169 YMFRNKDTDEINVIYQRNHGGYGVIQPHGSNGNG 202
>gi|427739220|ref|YP_007058764.1| 30S ribosomal protein S30 [Rivularia sp. PCC 7116]
gi|427374261|gb|AFY58217.1| SSU ribosomal protein S30P [Rivularia sp. PCC 7116]
Length = 221
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/200 (45%), Positives = 125/200 (62%), Gaps = 19/200 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KA H+ EVDV LSV K PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAANHFHHITNEVDVHLSV-----AKNPRINPNQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV- 214
EVT++ ++RAEE +E +YASIDLV++ I R+LRK KE+ D H + N ++
Sbjct: 56 AEVTIYANG-NIIRAEESSENLYASIDLVANKIARQLRKYKERRRDKKIHDRTNNIEEII 114
Query: 215 -REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
E VT ++ D E +E+VR K+F MPP+TVS+A+EQL V HDFY F N
Sbjct: 115 PEEMVTDLI---GDRTPE-----LPEEVVRTKYFAMPPMTVSQALEQLRLVGHDFYMFHN 166
Query: 274 EETGEINIVYKRKAGGYGVI 293
ET EIN++Y+R GGYGVI
Sbjct: 167 SETDEINVIYERNHGGYGVI 186
>gi|359457749|ref|ZP_09246312.1| high light inducible protein [Acaryochloris sp. CCMEE 5410]
Length = 212
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 132/207 (63%), Gaps = 17/207 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KA + +L E+DV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAANHYQNLTTEIDVHLSV-----ARNPRITTKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK-- 213
EVTLF V+RAEE +E +YASIDLV+ I R+LRK KEK G + KG NR K
Sbjct: 56 AEVTLFVNG-SVIRAEESSENLYASIDLVADKIARQLRKYKEKRQTKGPN-KGSNRSKAV 113
Query: 214 -VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
++ P Q + D + + +E+VR K+F + P++V +A+EQL+ VDHDFY F
Sbjct: 114 ALQTPEEQPLIGDL---TRDRAPELPEEVVRCKYFAISPMSVHDALEQLDLVDHDFYVFE 170
Query: 273 NEETGEINIVYKRKAGGYGVIIPK-GN 298
N +TG++N++Y+R GGYGVI P+ GN
Sbjct: 171 NADTGQLNVIYERNHGGYGVIQPRQGN 197
>gi|158336225|ref|YP_001517399.1| high light inducible protein [Acaryochloris marina MBIC11017]
gi|158306466|gb|ABW28083.1| high light inducible protein [Acaryochloris marina MBIC11017]
Length = 212
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 132/207 (63%), Gaps = 17/207 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KA + +L E+DV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAANHYQNLTTEIDVHLSV-----ARNPRITTKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK-- 213
EVTLF V+RAEE +E +YASIDLV+ I R+LRK KEK G + KG NR K
Sbjct: 56 AEVTLFVNG-SVIRAEESSENLYASIDLVADKIARQLRKYKEKRQTKGPN-KGSNRSKAV 113
Query: 214 -VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
++ P Q + D + + +E+VR K+F + P++V +A+EQL+ VDHDFY F
Sbjct: 114 ALQTPEEQPLIGDL---TRDRAPELPEEVVRCKYFAISPMSVHDALEQLDLVDHDFYVFE 170
Query: 273 NEETGEINIVYKRKAGGYGVIIPK-GN 298
N +TG++N++Y+R GGYGVI P+ GN
Sbjct: 171 NADTGQLNVIYERNHGGYGVIQPRQGN 197
>gi|428769392|ref|YP_007161182.1| 30S ribosomal protein S30 [Cyanobacterium aponinum PCC 10605]
gi|428683671|gb|AFZ53138.1| SSU ribosomal protein S30P [Cyanobacterium aponinum PCC 10605]
Length = 192
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 128/205 (62%), Gaps = 21/205 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+E+T+++ ++VEEK+ KAV +L +VDV LSV + RI +
Sbjct: 1 MKLLIQGNNIEVTESIHDYVEEKLEKAVKHFQNLATKVDVHLSV-----ARNARISNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ ++RA+E +E +YASIDLVS I R+LRK KE+ H
Sbjct: 56 AEVTVYANG-TIIRAQEHSENLYASIDLVSDKITRQLRKYKERNLAKKTHTA-------- 106
Query: 216 EPVTQVVENDA---DVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
E + VE D+ + E + E+VRMK+F M P+T+ +A+EQL+ VDHDFY FR
Sbjct: 107 EKTSDAVEEKTVGTDLIGDREPE-LPSEVVRMKYFAMTPMTIDQALEQLQLVDHDFYMFR 165
Query: 273 NEETGEINIVYKRKAGGYGVIIPKG 297
NEETGEIN++Y+R GGYGVI P+
Sbjct: 166 NEETGEINVIYQRNHGGYGVIQPRN 190
>gi|427419888|ref|ZP_18910071.1| SSU ribosomal protein S30P [Leptolyngbya sp. PCC 7375]
gi|425762601|gb|EKV03454.1| SSU ribosomal protein S30P [Leptolyngbya sp. PCC 7375]
Length = 230
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 126/207 (60%), Gaps = 18/207 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQGKNLE+T+ ++ HV +K+ K+V ++ +VDV LSV GG K P + EV
Sbjct: 1 MKLVIQGKNLEITEAIRQHVSQKIEKSVSHFQRMINKVDVCLSVAGGT--KMPNRQYAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE--SDHGRHMKGFNRLKVRE 216
T+ + VVRAEE +E++YASIDLV+ I R+LRK KEK SDH + VR
Sbjct: 59 TVHVNR-AVVRAEESSESLYASIDLVADKICRQLRKYKEKRRSSDH---------VSVRS 108
Query: 217 PVTQVVENDADVQS----EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
DA++ E+ E+VR K+F M P++V EA+E L+ +DHDFY F
Sbjct: 109 MEIDTTSQDANLHVTELLEQGQPQLPAEVVRTKYFAMAPMSVQEALENLQLIDHDFYVFY 168
Query: 273 NEETGEINIVYKRKAGGYGVIIPKGNG 299
N ET IN++Y+R GGYG+I P+ G
Sbjct: 169 NLETDRINVIYERNHGGYGLIQPRPAG 195
>gi|218247659|ref|YP_002373030.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 8801]
gi|218168137|gb|ACK66874.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 8801]
Length = 198
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 134/207 (64%), Gaps = 16/207 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+++T+++ ++V+EK+ KAV + +VDV LSV + RI +
Sbjct: 1 MKLLIQGNNIDVTESIHDYVQEKLEKAVKHFQSITTKVDVHLSV-----ARNARITNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E++YASIDLVS I R+LRK KEK ++ K N +KV
Sbjct: 56 AEVTVYANG-TVIRAQEGSESLYASIDLVSDKIARQLRKYKEKLNN----KKAPNPVKVG 110
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
E VT + D+ + + E++RMK+F MPP+T+ EA+ QLE VDHDFY FRN++
Sbjct: 111 E-VTTATAIEGDLIGDRTPE-LPAEVIRMKYFAMPPMTIDEALHQLELVDHDFYMFRNKD 168
Query: 276 TGEINIVYKRKAGGYGVIIPKG-NGKA 301
T EIN++Y+R GGYGVI P G NG
Sbjct: 169 TDEINVIYQRNHGGYGVIQPHGSNGNG 195
>gi|428297538|ref|YP_007135844.1| 30S ribosomal protein S30 [Calothrix sp. PCC 6303]
gi|428234082|gb|AFY99871.1| SSU ribosomal protein S30P [Calothrix sp. PCC 6303]
Length = 219
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 130/208 (62%), Gaps = 18/208 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+I GKN+E+TD ++ +V +K+ KAV L EVDV LSV + P ++ EV
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQTLTTEVDVHLSV--ARNNRSP-VQAAEV 57
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ K V+RAEE +E +YASIDLV+ I R+LRK KE+ + ++ V +
Sbjct: 58 TIYANK-NVIRAEESSENLYASIDLVADKISRQLRKYKERLQNKKNNL-------VENDI 109
Query: 219 TQVVENDADVQSE---EEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
++VVE + + ++ +E+VR K+F M P+T+SEA+E L+ V HDFY F N E
Sbjct: 110 SEVVEAEIPIVNDLIGSRTPELPEEVVRTKYFAMSPMTISEALEHLQLVGHDFYMFNNSE 169
Query: 276 TGEINIVYKRKAGGYGVIIPK----GNG 299
TGEIN++Y+R GGYGVI P+ GNG
Sbjct: 170 TGEINVIYERNHGGYGVIQPRKNTNGNG 197
>gi|443474991|ref|ZP_21064955.1| sigma 54 modulation protein/ribosomal protein S30EA [Pseudanabaena
biceps PCC 7429]
gi|443020248|gb|ELS34231.1| sigma 54 modulation protein/ribosomal protein S30EA [Pseudanabaena
biceps PCC 7429]
Length = 191
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/200 (45%), Positives = 125/200 (62%), Gaps = 18/200 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+T+ ++ +VE+K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEVTEAIREYVEQKIDKAVSHFQALTTEVDVHLSV-----ARNPRIASSQS 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I RKLRK KE++++ + V
Sbjct: 56 AEVTVYANG-SVIRAEEKSENLYASIDLVADKISRKLRKFKERKTERA---AAKTSVAVL 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
E + ND V ++VR K+F MP L+V EA+E+LE +DHDFY FRN +
Sbjct: 112 EQPPLPLPNDNRVVE------LPSQVVRNKYFAMPALSVDEALERLELIDHDFYVFRNAD 165
Query: 276 TGEINIVYKRKAGGYGVIIP 295
TGEIN+VY+R GGYGVI P
Sbjct: 166 TGEINVVYERNHGGYGVIQP 185
>gi|428772388|ref|YP_007164176.1| 30S ribosomal protein S30 [Cyanobacterium stanieri PCC 7202]
gi|428686667|gb|AFZ46527.1| SSU ribosomal protein S30P [Cyanobacterium stanieri PCC 7202]
Length = 192
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 129/208 (62%), Gaps = 25/208 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+E+TD++ N+VEEK+ KAV +L +VDV LSV + RI +
Sbjct: 1 MKLLIQGNNIEVTDSIHNYVEEKLEKAVKHFQNLASKVDVHLSV-----ARNARISNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ ++RA+E++E +YASIDLVS I R+LRK KEK D H
Sbjct: 56 AEVTVYANG-TIIRAQENSENLYASIDLVSDKITRQLRKYKEKNLDKKIH---------- 104
Query: 216 EPVTQVVE--NDADVQSEEEDDNFVD---EIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
PV + VE + V+ D V+ E+VRMK+F M +++ EA EQL+ VDHDFY
Sbjct: 105 -PVEKTVEAIEEKPVEDSLIGDRHVELPAEVVRMKYFAMESMSIEEAKEQLQLVDHDFYM 163
Query: 271 FRNEETGEINIVYKRKAGGYGVIIPKGN 298
FRN+ET EIN++Y R GG+GVI P+ N
Sbjct: 164 FRNKETNEINVIYIRNHGGFGVIQPRAN 191
>gi|119483431|ref|ZP_01618845.1| light-repressed protein [Lyngbya sp. PCC 8106]
gi|119458198|gb|EAW39320.1| light-repressed protein [Lyngbya sp. PCC 8106]
Length = 212
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 132/216 (61%), Gaps = 26/216 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL++QGKNLE+T+ + +V +K+ KAV + L EVDV LS+ + PRI +
Sbjct: 1 MKLVVQGKNLEITEAIHEYVHQKITKAVSHYQQLTNEVDVHLSI-----ARNPRINPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ I R+LRK K+K G+H+
Sbjct: 56 AEVTIYANG-TVIRAQESSENLYASIDLVADKIARQLRKFKDKRQ--GKHLHP------- 105
Query: 216 EPVTQVVENDADVQS--EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ +VVEN ++ + E+VR K+F MPP+ + +A+EQL+ VDHDFY F N
Sbjct: 106 PKLAEVVENQPVIEDLIGDRQPELPPEVVRTKYFAMPPMNLQDALEQLQLVDHDFYVFCN 165
Query: 274 EETGEINIVYKR-KAGGYGVIIPKG-----NGKAKK 303
+TGE+N++YKR GGYG+I P+ NGKA +
Sbjct: 166 ADTGELNVIYKRVNHGGYGLIQPRNNNGHTNGKAAQ 201
>gi|427714234|ref|YP_007062858.1| 30S ribosomal protein S30 [Synechococcus sp. PCC 6312]
gi|427378363|gb|AFY62315.1| SSU ribosomal protein S30P [Synechococcus sp. PCC 6312]
Length = 205
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 132/217 (60%), Gaps = 23/217 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
++L+I GKN+++TD ++++VE+K+ +A ++ +E+DV LSV + PRI +
Sbjct: 1 MQLVIHGKNIDITDAIRSYVEQKLERAAGHFQNITQEIDVHLSV-----ARNPRITTNQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ ++RAEE ++ +YAS+DLV+ + RKLRK+KEK D K R
Sbjct: 56 AEVTIYVNG-SIIRAEESSDNLYASVDLVADKVYRKLRKLKEKRQD-----------KSR 103
Query: 216 EPVTQVVENDADVQSEEED--DNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+EN V D E+VR+K+F MP +TV A+EQLE VDHDFY FRN
Sbjct: 104 THEVPEIENPKLVPDLLGDRAPELPQEVVRVKYFAMPAMTVEAALEQLEMVDHDFYVFRN 163
Query: 274 EETGEINIVYKRKAGGYGVIIPK-GNGKAKKLEPLEV 309
ETGEIN++Y+R GGYGVI P+ GN + L+V
Sbjct: 164 AETGEINVIYERNHGGYGVIQPRNGNDNHQSDSDLQV 200
>gi|443327170|ref|ZP_21055802.1| ribosomal subunit interface protein [Xenococcus sp. PCC 7305]
gi|442793201|gb|ELS02656.1| ribosomal subunit interface protein [Xenococcus sp. PCC 7305]
Length = 200
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 130/209 (62%), Gaps = 15/209 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG ++ +TD++ ++V++K+ KAV + + +VDV LSV + R+ +
Sbjct: 1 MKLLIQGNDITVTDSIHDYVQQKLEKAVRHYQSITTKVDVHLSV-----ARKHRVNDKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASID+VS I R+LRK KEK+ H + +R V
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDMVSDKIARQLRKYKEKQLHKKTHAQVNSREVVE 114
Query: 216 EP-VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
EP V +VE + E +E+VR K+F MPP+T EA+E L+ +DHDFY FRN
Sbjct: 115 EPPVEDLVETNLISDRAPE---LPEEVVRTKYFTMPPMTAREALEHLQLIDHDFYMFRNS 171
Query: 275 ETGEINIVYKRKAGGYGVIIPKG--NGKA 301
ET EIN++Y R GGYGVI P+ NG A
Sbjct: 172 ETNEINVIYSRNHGGYGVIQPRAETNGNA 200
>gi|452820205|gb|EME27251.1| plastid-specific ribosomal protein PSRP-1 precursor [Galdieria
sulphuraria]
Length = 280
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 146/257 (56%), Gaps = 31/257 (12%)
Query: 63 NSSFFGP--FKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLII-QGKNLELTDTVKNHVE 119
N F P + +I +R + + + + S +VKLI+ G N+ELT+ + +VE
Sbjct: 29 NVLFLKPSAYSRIVFLRGVRGRKESVSIPFSMKISEDAVKLIVVTGNNIELTEALHKYVE 88
Query: 120 EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR---RCEVTLFTKKHGVVRAEEDAET 176
EKVGKA+LK+ H V +V+V LSV P I+ EVT+F +KH V+RA E AET
Sbjct: 89 EKVGKAILKYIHFVVKVEVHLSV-----AHNPSIKLRHTSEVTVFARKH-VLRASETAET 142
Query: 177 VYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEE- 233
+YA+IDLVS I +RKL++ KE+ E HG + P T +V EEE
Sbjct: 143 MYAAIDLVSDITERKLQRYKERLHEPIHGPKTSDIAVNPI--PETDLVSRRPSRGDEEEW 200
Query: 234 --------DDNFVD------EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
DN +D ++V+ K F +P TV+EA+ LE +DHDFY FRN ETGE+
Sbjct: 201 KELVDKYSSDNLLDTLSPEDKVVKRKSFPVPRQTVAEAVLCLEYIDHDFYVFRNSETGEV 260
Query: 280 NIVYKRKAGGYGVIIPK 296
NIVY+R GG G+I+P+
Sbjct: 261 NIVYRRNHGGVGLIVPE 277
>gi|425442586|ref|ZP_18822828.1| Light repressed protein A [Microcystis aeruginosa PCC 9717]
gi|389716329|emb|CCH99433.1| Light repressed protein A [Microcystis aeruginosa PCC 9717]
Length = 199
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 128/213 (60%), Gaps = 28/213 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEPIHDYVEQKLEKAVKHFNGITTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH H
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHRTHA------------ 105
Query: 219 TQVVENDADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
V+ VQ + DDN + E+VRMK+F MPP+T+ EA+ QL+ VDHDFY
Sbjct: 106 --TVKTSEVVQEKPLDDNLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFYM 163
Query: 271 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 300
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRPVNLNGK 196
>gi|434397738|ref|YP_007131742.1| sigma 54 modulation protein/ribosomal protein S30EA [Stanieria
cyanosphaera PCC 7437]
gi|428268835|gb|AFZ34776.1| sigma 54 modulation protein/ribosomal protein S30EA [Stanieria
cyanosphaera PCC 7437]
Length = 199
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 126/204 (61%), Gaps = 17/204 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +TD + ++V K+ KAV + ++ +VDV LSV K R+ +
Sbjct: 1 MKLLIQGNNITVTDAINDYVHNKLEKAVKHYQNITTKVDVHLSV-----AKNARVNNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASID+VS I R+LRK KEK D K K
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDMVSDKIARQLRKYKEKLLDQ----KTQTATKTG 110
Query: 216 EPVTQ-VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
E VT+ V ND E N E+VRMK+F MPP+T+ EA++QL+ VDHDFY F N+
Sbjct: 111 ELVTEGTVANDLFSDRSPELPN---EVVRMKYFSMPPMTIEEALQQLQLVDHDFYMFLNK 167
Query: 275 ETGEINIVYKRKAGGYGVIIPKGN 298
+T EIN++Y R GGYGVI P+ N
Sbjct: 168 DTNEINVIYVRNHGGYGVIQPRFN 191
>gi|302855493|ref|XP_002959239.1| chloroplast-specific ribosomal protein [Volvox carteri f.
nagariensis]
gi|300255388|gb|EFJ39699.1| chloroplast-specific ribosomal protein [Volvox carteri f.
nagariensis]
Length = 289
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 135/215 (62%), Gaps = 15/215 (6%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFG-KGPRIRR 155
S+V++IIQG+ L +T+ +K +VEEKV KA+ +H ++EVDV LS RGG+ G G + ++
Sbjct: 72 STVRIIIQGRKLPVTNAIKEYVEEKVAKAIQNFAHTLKEVDVTLSARGGDTGTHGKKEQK 131
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR----------- 204
+VT+FT ++GVVR E+ +YA+IDLV I+ KL ++KEK G+
Sbjct: 132 VDVTIFTLRNGVVRVEDRESNLYAAIDLVCDKIRSKLTRVKEKAITKGKWPGKAGPKEDV 191
Query: 205 HMKGFNR-LKVREPVTQVVENDADVQSE--EEDDNFVDEIVRMKFFEMPPLTVSEAIEQL 261
+ F LK + TQ+ + +A++Q + E + N+ ++R K + P+TV EAI+ L
Sbjct: 192 EEEDFQEYLKDVKLETQLFDKEAELQKQFAELNRNYPATVMRSKTVVLDPITVEEAIDAL 251
Query: 262 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
E V H FY FR T + +VYKR++GGYGVI+P+
Sbjct: 252 EAVGHSFYVFREMTTDTVQVVYKRESGGYGVIVPQ 286
>gi|443658859|ref|ZP_21132219.1| ribosomal subunit interface protein [Microcystis aeruginosa
DIANCHI905]
gi|159027850|emb|CAO87063.1| lrtA [Microcystis aeruginosa PCC 7806]
gi|443332831|gb|ELS47418.1| ribosomal subunit interface protein [Microcystis aeruginosa
DIANCHI905]
Length = 199
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 128/213 (60%), Gaps = 28/213 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEAIHDYVEQKLEKAVKHFNGITTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH H
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHRTH------------- 104
Query: 219 TQVVENDADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
V+ VQ + DDN + E+VRMK+F MPP+T+ EA+ QL+ VDHDF+
Sbjct: 105 -STVKTSEVVQEKPLDDNLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFFM 163
Query: 271 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 300
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRTVNVNGK 196
>gi|428779216|ref|YP_007171002.1| ribosomal subunit interface protein [Dactylococcopsis salina PCC
8305]
gi|428693495|gb|AFZ49645.1| ribosomal subunit interface protein [Dactylococcopsis salina PCC
8305]
Length = 237
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 133/216 (61%), Gaps = 21/216 (9%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK 149
M DG ++ +KL+IQG N+E+T+ ++N+VEEK+ AV + +VDV LSV
Sbjct: 1 MLEDG-VAKMKLLIQGNNIEVTEAIRNYVEEKLENAVKHFQQITSKVDVHLSV-----AH 54
Query: 150 GPRI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
R+ + EVT+ V+RA+E + +YASIDLV+ I R+LRK KEK H
Sbjct: 55 NSRVSDRTKAEVTVHANG-KVIRAQEHSGDLYASIDLVADKIARQLRKYKEK----NLHK 109
Query: 207 KGFNRLKVREPVTQ--VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENV 264
K + K E VT V EN ++ E +++VR+K+F MPP+++ EA EQL+ V
Sbjct: 110 KTHDSPKTAETVTPEPVSENLVRDRAPE----LPEDVVRVKYFAMPPMSIEEAQEQLQLV 165
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVIIP-KGNG 299
DHDFY F NEET EIN++Y+R GGYGVI P KGNG
Sbjct: 166 DHDFYVFCNEETNEINVIYQRNHGGYGVIQPRKGNG 201
>gi|113476720|ref|YP_722781.1| sigma 54 modulation protein / 30S ribosomal protein S30P
[Trichodesmium erythraeum IMS101]
gi|110167768|gb|ABG52308.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Trichodesmium erythraeum IMS101]
Length = 215
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/203 (45%), Positives = 127/203 (62%), Gaps = 20/203 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD++ +V +K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDSIHEYVNQKIEKAVNHFQQLTTEVDVHLSV-----ARNPRINPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ I R+LRK KEK K + ++
Sbjct: 56 AEVTIYANG-TVIRAQESSENLYASIDLVADKIARQLRKYKEKRQSKVNKTKTVDLIE-S 113
Query: 216 EPVTQVVEN-DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+PV VEN D Q+E E+VR K+F MP +TV EA+EQL+ +DHDFY F N
Sbjct: 114 QPV---VENLIGDRQAE-----LPSEVVRTKYFPMPSMTVEEALEQLQLIDHDFYMFSNG 165
Query: 275 ETGEINIVYKR-KAGGYGVIIPK 296
TGEIN++YKR GGYG+I P+
Sbjct: 166 VTGEINVIYKRYHHGGYGLIQPR 188
>gi|422301566|ref|ZP_16388933.1| Light repressed protein A [Microcystis aeruginosa PCC 9806]
gi|389789382|emb|CCI14566.1| Light repressed protein A [Microcystis aeruginosa PCC 9806]
Length = 199
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 128/213 (60%), Gaps = 28/213 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEPIHDYVEQKLEKAVKHFNGITTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH H
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHRTHA------------ 105
Query: 219 TQVVENDADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
V+ VQ + DDN + E+VRMK+F MPP+T+ EA+ QL+ VDHDF+
Sbjct: 106 --TVKTSEVVQEKPLDDNLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFFM 163
Query: 271 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 300
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRPVNLNGK 196
>gi|159479306|ref|XP_001697734.1| plastid-specific ribosomal protein 1 [Chlamydomonas reinhardtii]
gi|158274102|gb|EDO99886.1| plastid-specific ribosomal protein 1 [Chlamydomonas reinhardtii]
Length = 286
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 142/247 (57%), Gaps = 20/247 (8%)
Query: 67 FGPFKQITVMRPTKVHTKPLPVR-MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKA 125
+GP + RP + L VR S +V++IIQG+ L +TD +K +VEEKV KA
Sbjct: 40 YGPNMAVVATRPAR---SGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKA 96
Query: 126 VLKHSHLVREVDVRLSVRGGEFGK-GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLV 184
V SH ++EVDV LS RGG+ G G + ++ EVT++T ++GVVR E+ +YA+IDLV
Sbjct: 97 VANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLV 156
Query: 185 SSIIQRKLRKIKEKESDHGR-----------HMKGFNR-LKVREPVTQVVENDADVQSEE 232
I+ KL+KIKEK G + F LK + TQ+ + + +Q +
Sbjct: 157 CDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQF 216
Query: 233 EDDN--FVDEIVRMKFFEMP-PLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGG 289
+ N + ++R K + P+TV EAI+ LE V H FY FR T + IVYKR++GG
Sbjct: 217 AELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFREMTTDTVQIVYKRESGG 276
Query: 290 YGVIIPK 296
YGVI+P+
Sbjct: 277 YGVIVPQ 283
>gi|425448088|ref|ZP_18828068.1| Light repressed protein A [Microcystis aeruginosa PCC 9443]
gi|425453532|ref|ZP_18833289.1| Light repressed protein A [Microcystis aeruginosa PCC 9807]
gi|389731221|emb|CCI04705.1| Light repressed protein A [Microcystis aeruginosa PCC 9443]
gi|389802070|emb|CCI18830.1| Light repressed protein A [Microcystis aeruginosa PCC 9807]
Length = 199
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 28/213 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEPIHDYVEQKLEKAVKHFNGITTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHR--------------T 103
Query: 219 TQVVENDADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
V+ VQ + DDN + E+VRMK+F MPP+T+ EA+ QL+ VDHDFY
Sbjct: 104 NATVKTSEVVQEKPLDDNLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFYM 163
Query: 271 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 300
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRPVNLNGK 196
>gi|172035072|ref|YP_001801573.1| light repressed protein [Cyanothece sp. ATCC 51142]
gi|171696526|gb|ACB49507.1| light repressed protein [Cyanothece sp. ATCC 51142]
Length = 201
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 128/209 (61%), Gaps = 29/209 (13%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---R 154
S+KL+IQG N+++T+++ ++V +K+ KAV + L +VDV LSV K RI
Sbjct: 2 SMKLLIQGNNIDVTESINDYVTQKLEKAVKHYQTLTTKVDVHLSV-----AKNARITNKH 56
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
+ EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK ++H
Sbjct: 57 KAEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKINNH------------ 103
Query: 215 REPVTQVVENDADVQSEEEDDNFVD-------EIVRMKFFEMPPLTVSEAIEQLENVDHD 267
+P + V + + E E D D E++RMK+F MPP+++ EA QLE VDHD
Sbjct: 104 -KPQSSVKNPEVLPEREIEKDLIGDREAALPPEVIRMKYFAMPPMSIEEAKHQLELVDHD 162
Query: 268 FYGFRNEETGEINIVYKRKAGGYGVIIPK 296
FY FRN++T EIN++Y R GG+GVI P+
Sbjct: 163 FYMFRNQDTDEINVIYMRNHGGFGVIQPR 191
>gi|428201041|ref|YP_007079630.1| ribosomal subunit interface protein [Pleurocapsa sp. PCC 7327]
gi|427978473|gb|AFY76073.1| ribosomal subunit interface protein [Pleurocapsa sp. PCC 7327]
Length = 198
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 122/198 (61%), Gaps = 10/198 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNITVTEAIHDYVEQKLEKAVKHFQGMTTKVDVHLSV--ARNARIPDKHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ D + +PV
Sbjct: 59 TVYANG-AVIRAQEGSENLYASIDLVSDKIARQLRKYKERLQDKKVASVKAGEIVEEKPV 117
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
++ + D + E+VRMK+F MPP+++ EA+EQL+ VDHDFY FRN +T E
Sbjct: 118 SETLIGDRTPE-------LPPEVVRMKYFAMPPMSIEEALEQLQLVDHDFYMFRNRDTNE 170
Query: 279 INIVYKRKAGGYGVIIPK 296
IN++Y R GGYGVI P+
Sbjct: 171 INVIYLRNHGGYGVIQPR 188
>gi|428777511|ref|YP_007169298.1| 30S ribosomal protein S30 [Halothece sp. PCC 7418]
gi|428691790|gb|AFZ45084.1| SSU ribosomal protein S30P [Halothece sp. PCC 7418]
Length = 230
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 126/208 (60%), Gaps = 22/208 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR---- 154
+KL+IQG N+E+T+ ++N+V+EK+ AV + +VDV LSV P R
Sbjct: 1 MKLLIQGNNIEVTEAIRNYVQEKLENAVKHFQQITSKVDVHLSV-------APNSRVSDR 53
Query: 155 -RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
+ EVT+ V+RA+E + +YASIDLV+ I R+LRK KEK H K + K
Sbjct: 54 TKAEVTVHANG-KVIRAQEQSGDLYASIDLVADKIARQLRKYKEKH----LHKKTHDSPK 108
Query: 214 VREPVT-QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
E V Q V+ D E D++VR+K+F MP +TV EA +QL+ VDHDFY FR
Sbjct: 109 TAETVAPQPVDEDLVNDRAPE---LPDDVVRVKYFAMPAMTVMEAKDQLQLVDHDFYVFR 165
Query: 273 NEETGEINIVYKRKAGGYGVIIPK-GNG 299
NEET EIN++Y+R GGYGVI P+ GNG
Sbjct: 166 NEETNEINVIYQRNHGGYGVIQPRNGNG 193
>gi|425435960|ref|ZP_18816403.1| Light repressed protein A [Microcystis aeruginosa PCC 9432]
gi|425450636|ref|ZP_18830460.1| Light repressed protein A [Microcystis aeruginosa PCC 7941]
gi|425460419|ref|ZP_18839900.1| Light repressed protein A [Microcystis aeruginosa PCC 9808]
gi|440753929|ref|ZP_20933131.1| ribosome-associated protein Y [Microcystis aeruginosa TAIHU98]
gi|389679407|emb|CCH91797.1| Light repressed protein A [Microcystis aeruginosa PCC 9432]
gi|389768434|emb|CCI06456.1| Light repressed protein A [Microcystis aeruginosa PCC 7941]
gi|389826859|emb|CCI22281.1| Light repressed protein A [Microcystis aeruginosa PCC 9808]
gi|440174135|gb|ELP53504.1| ribosome-associated protein Y [Microcystis aeruginosa TAIHU98]
Length = 199
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 129/213 (60%), Gaps = 28/213 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEAIHDYVEQKLEKAVKHFNGITTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH R
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDH------------RTNA 105
Query: 219 TQVVENDADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
T V+ VQ + DDN + E+VRMK+F MPP+T+ EA+ QL+ VDHDF+
Sbjct: 106 T--VKTSEVVQEKPLDDNLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFFM 163
Query: 271 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 300
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRPVNVNGK 196
>gi|443323634|ref|ZP_21052638.1| ribosomal subunit interface protein [Gloeocapsa sp. PCC 73106]
gi|442786616|gb|ELR96345.1| ribosomal subunit interface protein [Gloeocapsa sp. PCC 73106]
Length = 198
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 128/207 (61%), Gaps = 20/207 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +TD + ++V++K+ +AV L +VDV LSV K RI +
Sbjct: 1 MKLLIQGNNIVVTDAIHDYVQQKLERAVKHFQALTTKVDVHLSV-----AKNDRIADKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLK 213
EVT++ V+RA+E +E +YASIDLV+ I R+LRK KE+ E H+K +
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVADKIARQLRKYKERKLEKKTNAHVK-VTDVV 113
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
EPVT + D ++ E E+VRMK+F MPP+T+ EA++QL+ VDHDFY FRN
Sbjct: 114 TEEPVTANLIGD---RTPE----LPAEVVRMKYFTMPPMTIEEALDQLQLVDHDFYMFRN 166
Query: 274 EETGEINIVYKRKAGGYGVIIPK-GNG 299
T EIN++Y R GGYGVI P+ GN
Sbjct: 167 SATDEINVIYMRNHGGYGVIQPRNGNN 193
>gi|126658526|ref|ZP_01729674.1| light repressed protein [Cyanothece sp. CCY0110]
gi|126620268|gb|EAZ90989.1| light repressed protein [Cyanothece sp. CCY0110]
Length = 199
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 128/208 (61%), Gaps = 29/208 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+++T+++ ++V +K+ KAV + +VDV LSV K RI +
Sbjct: 1 MKLLIQGNNIDVTESINDYVTQKLEKAVKHYQTFTTKVDVHLSV-----AKNARITDKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK ++H
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKINNH------------- 101
Query: 216 EPVTQVVENDADVQSEEEDDNFVD-------EIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
+P + V D ++E ++D D E++RMK+F MPP+++ EA QLE VDHDF
Sbjct: 102 KPQSSVKSPDVLPETEVKEDLIGDREVELPPEVIRMKYFAMPPMSIEEAKHQLELVDHDF 161
Query: 269 YGFRNEETGEINIVYKRKAGGYGVIIPK 296
Y FRN++T EIN++Y R GG+GVI P+
Sbjct: 162 YMFRNQDTDEINVIYMRNHGGFGVIQPR 189
>gi|354551920|ref|ZP_08971228.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
ATCC 51472]
gi|353555242|gb|EHC24630.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
ATCC 51472]
Length = 199
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 127/208 (61%), Gaps = 29/208 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+++T+++ ++V +K+ KAV + L +VDV LSV K RI +
Sbjct: 1 MKLLIQGNNIDVTESINDYVTQKLEKAVKHYQTLTTKVDVHLSV-----AKNARITNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK ++H
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKINNH------------- 101
Query: 216 EPVTQVVENDADVQSEEEDDNFVD-------EIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
+P + V + + E E D D E++RMK+F MPP+++ EA QLE VDHDF
Sbjct: 102 KPQSSVKNPEVLPEREIEKDLIGDREAALPPEVIRMKYFAMPPMSIEEAKHQLELVDHDF 161
Query: 269 YGFRNEETGEINIVYKRKAGGYGVIIPK 296
Y FRN++T EIN++Y R GG+GVI P+
Sbjct: 162 YMFRNQDTDEINVIYMRNHGGFGVIQPR 189
>gi|218441096|ref|YP_002379425.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 7424]
gi|218173824|gb|ACK72557.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 7424]
Length = 199
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 129/204 (63%), Gaps = 21/204 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR---R 155
+KL+IQG N+ +T+ + ++V++K+ KAV L +VDV LSV K RI+ +
Sbjct: 1 MKLLIQGNNITVTEAIHDYVQQKLEKAVKHFQTLTTKVDVHLSV-----AKNARIQNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KE++ + H + +K
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERKLEQNAH----SPVKAG 110
Query: 216 EPVTQ-VVEND--ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
E V Q +E + D Q E E+VRMK+F MPP+++ EA+EQL+ VDHDF+ FR
Sbjct: 111 EVVQQETIEENLIGDRQPE-----LPPEVVRMKYFGMPPMSIDEALEQLQLVDHDFFMFR 165
Query: 273 NEETGEINIVYKRKAGGYGVIIPK 296
N +T EIN++Y R GG+GVI P+
Sbjct: 166 NRDTNEINVIYIRNHGGFGVIQPR 189
>gi|67920272|ref|ZP_00513792.1| Sigma 54 modulation protein/ribosomal protein S30EA [Crocosphaera
watsonii WH 8501]
gi|416375761|ref|ZP_11683392.1| Ribosomal subunit interface protein [Crocosphaera watsonii WH 0003]
gi|67857756|gb|EAM52995.1| Sigma 54 modulation protein/ribosomal protein S30EA [Crocosphaera
watsonii WH 8501]
gi|357266475|gb|EHJ15096.1| Ribosomal subunit interface protein [Crocosphaera watsonii WH 0003]
Length = 199
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 127/202 (62%), Gaps = 17/202 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+++T+++ ++V++K+ KAV + +VDV LSV K RI +
Sbjct: 1 MKLLIQGNNIDVTESINDYVKQKLEKAVKHYQTFTTKVDVHLSV-----AKNARITDKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK S+H +L
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKISRQLRKYKEKVSNHKPQSSA--KLPEV 112
Query: 216 EPVTQVVEN-DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
P +V E+ D Q+E E++RMK+F MP +++ EA QLE VDHDFY FRN+
Sbjct: 113 LPEKEVSEDLIGDRQAE-----LPPEVIRMKYFAMPSMSIEEAKHQLELVDHDFYMFRNQ 167
Query: 275 ETGEINIVYKRKAGGYGVIIPK 296
ET EIN++Y R GG+G+I P+
Sbjct: 168 ETEEINVIYMRNHGGFGIIQPR 189
>gi|166363884|ref|YP_001656157.1| light repressed protein A-like protein [Microcystis aeruginosa
NIES-843]
gi|425467679|ref|ZP_18846958.1| Light repressed protein A [Microcystis aeruginosa PCC 9809]
gi|166086257|dbj|BAG00965.1| light repressed protein A homolog [Microcystis aeruginosa NIES-843]
gi|389829489|emb|CCI29154.1| Light repressed protein A [Microcystis aeruginosa PCC 9809]
Length = 199
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 128/213 (60%), Gaps = 28/213 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P R EV
Sbjct: 1 MKLLIQGNNIAVTEPIHDYVEQKLEKAVKHFNGITTKVDVHLSVEKN--ARIPDRHRAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH + PV
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDH----------RTNAPV 107
Query: 219 TQVVENDADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
+ VQ + D + + E+VRMK+F MPP+T+ EA+ QL+ VDHDFY
Sbjct: 108 ----KTSEVVQEKPLDGSLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFYM 163
Query: 271 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 300
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRPVNLNGK 196
>gi|428221845|ref|YP_007106015.1| ribosomal subunit interface protein [Synechococcus sp. PCC 7502]
gi|427995185|gb|AFY73880.1| ribosomal subunit interface protein [Synechococcus sp. PCC 7502]
Length = 190
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 125/211 (59%), Gaps = 36/211 (17%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+K+IIQGKN+E+TD ++ +V++K+ +AV + VDV LSV + PRI +
Sbjct: 1 MKIIIQGKNIEITDAIREYVDQKIERAVNHFKSITTAVDVNLSV-----ARNPRIISSQS 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E++YASIDLV+ I RKLRK KE+++
Sbjct: 56 AEVTIYANG-AVIRAEERSESLYASIDLVADKIARKLRKFKERKT--------------- 99
Query: 216 EPVTQVVENDADVQSEEE-----DDNFVDE----IVRMKFFEMPPLTVSEAIEQLENVDH 266
+V A +E+ D N V E ++R K+F M P+TV EA+E+LE VDH
Sbjct: 100 ---AKVAPKTALAVTEQPPIPLPDQNRVPELPAQVIRNKYFAMLPMTVEEAVERLEMVDH 156
Query: 267 DFYGFRNEETGEINIVYKRKAGGYGVIIPKG 297
DF+ FRN T EIN+VY+R GGYGVI P G
Sbjct: 157 DFFVFRNVATDEINVVYERNHGGYGVIQPHG 187
>gi|81301161|ref|YP_401369.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Synechococcus elongatus PCC 7942]
gi|81170042|gb|ABB58382.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Synechococcus elongatus PCC 7942]
Length = 207
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 128/207 (61%), Gaps = 12/207 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL++QG N+++T + ++V++K+ KAV + + E+DV LSV PR + EV
Sbjct: 1 MKLVVQGTNIDVTAAIHDYVQQKLDKAVSHYQSFLTEIDVHLSV-AKHAKSNPR-QTAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RAEE E +YASIDLVS I R+L+K KEK D KG +L E
Sbjct: 59 TIYANG-TVIRAEECNENLYASIDLVSDKITRQLKKYKEKLRDR----KG--QLSTAETA 111
Query: 219 TQVVEND--ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
Q+ + D+ + + + +IVR K+F MP +TV +A+ QL+ VDHDFY FRN T
Sbjct: 112 DQLSDGALVTDLLNGRQPE-LPQDIVRTKYFAMPAMTVEDALAQLQLVDHDFYMFRNAAT 170
Query: 277 GEINIVYKRKAGGYGVIIPKGNGKAKK 303
GEIN++Y+R GGYGVI P+ G ++K
Sbjct: 171 GEINVIYERNHGGYGVIQPRPEGNSEK 197
>gi|16331216|ref|NP_441944.1| light repressed protein [Synechocystis sp. PCC 6803]
gi|383322959|ref|YP_005383812.1| light repressed protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326128|ref|YP_005386981.1| light repressed protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383492012|ref|YP_005409688.1| light repressed protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384437280|ref|YP_005652004.1| light repressed protein [Synechocystis sp. PCC 6803]
gi|451815372|ref|YP_007451824.1| light repressed protein [Synechocystis sp. PCC 6803]
gi|2500503|sp|P74518.1|LRTA_SYNY3 RecName: Full=Light-repressed protein A homolog
gi|1653710|dbj|BAA18622.1| light repressed protein [Synechocystis sp. PCC 6803]
gi|339274312|dbj|BAK50799.1| light repressed protein [Synechocystis sp. PCC 6803]
gi|359272278|dbj|BAL29797.1| light repressed protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275448|dbj|BAL32966.1| light repressed protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359278618|dbj|BAL36135.1| light repressed protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407961407|dbj|BAM54647.1| light repressed protein [Synechocystis sp. PCC 6803]
gi|451781341|gb|AGF52310.1| light repressed protein [Synechocystis sp. PCC 6803]
Length = 191
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 125/202 (61%), Gaps = 20/202 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +T+ + ++VEEKV +AV +L +VDV LSV + RI +
Sbjct: 1 MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ I R+LRK KE+ D K +K
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVADKIARQLRKYKERIQD-----KQHGNVKTS 109
Query: 216 EPVTQ--VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
E V V EN ++ E E++RMK+F MPP+ + +A+EQL+ VDHDFY FRN
Sbjct: 110 EIVEDKPVEENLIGDRAPE----LPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRN 165
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
++T EIN++Y R GGYGVI P
Sbjct: 166 KDTDEINVIYIRNHGGYGVIQP 187
>gi|87125605|ref|ZP_01081450.1| light repressed protein A-like protein [Synechococcus sp. RS9917]
gi|86166905|gb|EAQ68167.1| light repressed protein A-like protein [Synechococcus sp. RS9917]
Length = 195
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 123/200 (61%), Gaps = 14/200 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLELT ++++ + K+ +AV +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLELTPALRDYTQSKLERAVQHFDDMVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ KE+ SDH H G +
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLCRQLRRFKERHSDH-HHSNGHRASET-- 111
Query: 217 PVTQVVENDADVQSEEEDDNFV---DEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P T + + A + D V D VR K+F MPP+++ EA QL+ +DHDFY FR+
Sbjct: 112 PPTDAIADAAPIDGSLLDGKEVQLPDPGVRRKYFAMPPMSLEEARHQLDVIDHDFYLFRD 171
Query: 274 EETGEINIVYKRKAGGYGVI 293
TG++ ++Y+R GGYGVI
Sbjct: 172 ASTGDLQVIYRRNHGGYGVI 191
>gi|307151678|ref|YP_003887062.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 7822]
gi|306981906|gb|ADN13787.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 7822]
Length = 199
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 126/201 (62%), Gaps = 15/201 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++V+EK+ KAV + +VDV LSV + G+ + EV
Sbjct: 1 MKLLIQGNNITVTEAIHDYVQEKLEKAVKHFQAITTKVDVHLSV--AKNGRVQNKHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ + K ++ +K + V
Sbjct: 59 TVYANG-AVIRAQEGSENLYASIDLVSDKIARQLRKYKERRLEQ----KAYSPVKTGDVV 113
Query: 219 T-QVVEND--ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
Q VE + D Q E E+VRMK+F MP +++ EA+EQL+ VDHDFY FRN
Sbjct: 114 QDQPVEGNLIGDRQPE-----LPPEVVRMKYFAMPLMSIEEALEQLQLVDHDFYMFRNRN 168
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
T EIN++Y R GGYGVI P+
Sbjct: 169 TNEINVIYIRNHGGYGVIQPR 189
>gi|390441883|ref|ZP_10229911.1| Light repressed protein A homolog [Microcystis sp. T1-4]
gi|389834781|emb|CCI34037.1| Light repressed protein A homolog [Microcystis sp. T1-4]
Length = 199
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 127/213 (59%), Gaps = 28/213 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEAIHDYVEQKLEKAVKHFNGMTTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHR--------------T 103
Query: 219 TQVVENDADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
V+ VQ + +D+ + E+VRMK+F MPP+T+ EA+ QL+ VDHDF+
Sbjct: 104 NATVKTSEVVQEKPLEDSLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFFM 163
Query: 271 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 300
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRPVNVNGK 196
>gi|427414860|ref|ZP_18905047.1| ribosomal subunit interface protein [Leptolyngbya sp. PCC 7375]
gi|425755513|gb|EKU96378.1| ribosomal subunit interface protein [Leptolyngbya sp. PCC 7375]
Length = 195
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 124/198 (62%), Gaps = 9/198 (4%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ +IQGK+L++TD + ++V +K+GKA+ +H + +VDV+LS K P +R EV
Sbjct: 1 MRWVIQGKDLKVTDAINDYVRQKIGKALARHEDIATKVDVKLS--APLQIKKPSQQRAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ V+RA E E +YASIDLV+ + R+L+K K K + + R + +
Sbjct: 59 TVHASG-TVIRAAEKHENLYASIDLVTDKLIRQLQKYKTK-----KQRRAQPRESLSNDL 112
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
Q +E A ++S + ++VR KFF MPP++V EA++ L+ VDHDFY FRN +T E
Sbjct: 113 NQSLETTA-LESSDRSPELPPKVVRNKFFMMPPISVEEALDNLQLVDHDFYMFRNAQTDE 171
Query: 279 INIVYKRKAGGYGVIIPK 296
IN++Y+R GGYGVI P+
Sbjct: 172 INVIYERNHGGYGVIQPR 189
>gi|56751760|ref|YP_172461.1| light repressed protein A-like protein [Synechococcus elongatus PCC
6301]
gi|56686719|dbj|BAD79941.1| light repressed protein A homolog [Synechococcus elongatus PCC
6301]
Length = 207
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 128/207 (61%), Gaps = 12/207 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL++QG N+++T + ++V++K+ KAV + + E+DV LSV PR + EV
Sbjct: 1 MKLVVQGTNIDVTAAIHDYVQQKLDKAVSHYQSFLTEIDVHLSV-AKHAKSNPR-QTAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RAEE E +YASIDLVS I R+L+K KE+ D KG +L E
Sbjct: 59 TIYANG-TVIRAEECNENLYASIDLVSDKITRQLKKYKEELRDR----KG--QLSTAETA 111
Query: 219 TQVVEND--ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
Q+ + D+ + + + +IVR K+F MP +TV +A+ QL+ VDHDFY FRN T
Sbjct: 112 DQLSDGALVTDLLNGRQPE-LPQDIVRTKYFAMPAMTVEDALAQLQLVDHDFYMFRNAAT 170
Query: 277 GEINIVYKRKAGGYGVIIPKGNGKAKK 303
GEIN++Y+R GGYGVI P+ G ++K
Sbjct: 171 GEINVIYERNHGGYGVIQPRPEGNSEK 197
>gi|148242897|ref|YP_001228054.1| light repressed protein A-like protein [Synechococcus sp. RCC307]
gi|147851207|emb|CAK28701.1| Light repressed protein A homolog [Synechococcus sp. RCC307]
Length = 187
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 124/197 (62%), Gaps = 16/197 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T ++++ E K+ +AV + +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEVTPALRDYTETKLSRAVSHFNGMVQEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVTLF V+RA+E ++ +YASIDLV+ + R+L++ K++ HG H + L+ E
Sbjct: 56 EVTLFASG-TVIRAQERSQNLYASIDLVAGKLARQLQRHKDRRQGHGHH----SDLQA-E 109
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
P ++ D +Q + +VR K+F MPP++V EAI QLE +DHDFY FRN +
Sbjct: 110 PEVMPLQGDM-LQGRHAE--LPAPVVRRKYFAMPPMSVEEAIHQLEVIDHDFYVFRNADN 166
Query: 277 GEINIVYKRKAGGYGVI 293
GE+ +VY+R GGYGVI
Sbjct: 167 GELQVVYQRNHGGYGVI 183
>gi|434384831|ref|YP_007095442.1| ribosomal subunit interface protein [Chamaesiphon minutus PCC 6605]
gi|428015821|gb|AFY91915.1| ribosomal subunit interface protein [Chamaesiphon minutus PCC 6605]
Length = 213
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 125/209 (59%), Gaps = 29/209 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL++Q KN+E+TD ++++V +K+ KAV + E+D+ LSV K PRI +
Sbjct: 1 MKLVLQSKNIEITDAIRDYVNQKIEKAVSHFEQITTEIDINLSV-----AKNPRIAAAQV 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I RKLRK KE+ F +
Sbjct: 56 AEVTIYVNG-AVIRAEEASEHLYASIDLVADKISRKLRKYKER---------NFTKKDRT 105
Query: 216 EPVTQVVENDADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIEQLENVDHD 267
E + + E ++ E D N D E+VR K+F + LT+ EA+ QL+ VDHD
Sbjct: 106 EGLKDIGE---ELDLELLDYNLTDNRSATLPAEVVRTKYFALSALTIEEAMAQLQLVDHD 162
Query: 268 FYGFRNEETGEINIVYKRKAGGYGVIIPK 296
FY +R+ ETGE+N+VY+R GG+GVI P+
Sbjct: 163 FYVYRSVETGEVNVVYRRNHGGFGVIQPR 191
>gi|170076891|ref|YP_001733529.1| light-repressed protein LrtA [Synechococcus sp. PCC 7002]
gi|190358896|sp|P47908.2|LRTA_SYNP2 RecName: Full=Light-repressed protein A; AltName:
Full=Dark-response protein 21; Short=DRP-21
gi|169884560|gb|ACA98273.1| light-repressed protein LrtA (ribosomal subunit interface protein)
[Synechococcus sp. PCC 7002]
Length = 193
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 120/203 (59%), Gaps = 19/203 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +T+++ ++VE K+ KA +VDV LSV RI +
Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSV-----ANNARITDKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK H V+
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTH--------VQ 106
Query: 216 EPVTQVVENDA--DVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
E ++V+ D D + E+VRMK+F MPP+T+ EA+EQL+ VDHDFY F N
Sbjct: 107 EKTSEVLPEDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLN 166
Query: 274 EETGEINIVYKRKAGGYGVIIPK 296
++T IN++Y R GGYGVI P+
Sbjct: 167 KDTNAINVIYIRNHGGYGVIQPR 189
>gi|425472371|ref|ZP_18851222.1| Light repressed protein A homolog [Microcystis aeruginosa PCC 9701]
gi|389881562|emb|CCI37899.1| Light repressed protein A homolog [Microcystis aeruginosa PCC 9701]
Length = 199
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 128/205 (62%), Gaps = 12/205 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEAIHDYVEQKLEKAVKHFNGMTTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH + + +K E V
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDH----RTNSTVKTSEVV 113
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ + + + E+VRMK+F MPP+T+ EA+ QL+ VDHDF+ F N++T E
Sbjct: 114 QEKPLEGSLIGDRTPE--LPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFFMFCNKDTNE 171
Query: 279 INIVYKRKAGGYGVIIPKG---NGK 300
IN++Y+R GG+GVI P+ NGK
Sbjct: 172 INVIYQRNHGGFGVIQPRPVNVNGK 196
>gi|318042189|ref|ZP_07974145.1| ribosomal subunit interface protein [Synechococcus sp. CB0101]
Length = 195
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 125/203 (61%), Gaps = 12/203 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T ++++ E+K+ +A+ +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEVTPAIRDYTEDKLKRAIGHFDGMVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+ + R+LR+ K++ DH H +
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVAGKLTRQLRRYKDRHDDH--HHSPGHHATTTP 112
Query: 217 PVTQVVENDADVQS--EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ ++ DA +S E ++ VR K+F MPP+++ +A+ QLE +DHDFY FR+
Sbjct: 113 SLAELPGQDAVSESLLEGKEATLPSPGVRRKYFAMPPMSIDDALHQLELIDHDFYLFRDA 172
Query: 275 ETGEINIVYKRKAGGYGVIIPKG 297
+GE+ +VY+R GG+GVI KG
Sbjct: 173 SSGELQVVYRRNHGGFGVIQAKG 195
>gi|124023834|ref|YP_001018141.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9303]
gi|123964120|gb|ABM78876.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9303]
Length = 195
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 124/200 (62%), Gaps = 14/200 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLELT ++ + + K+ +A+ +V+E DV LSV + P + +
Sbjct: 1 MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSV-----ARNPSVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ KE+ SDH H G
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLCRQLRRYKERHSDH-HHSPGHRASST-- 111
Query: 217 PVTQVVENDADVQS---EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P T+ V ++A + + ++ + VR K+F MPP++V +A QL+ +DHDFY FR
Sbjct: 112 PTTEAVIDEAPIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARHQLDLIDHDFYLFRE 171
Query: 274 EETGEINIVYKRKAGGYGVI 293
+E+G++ ++Y+R GGYGVI
Sbjct: 172 QESGQLQVIYRRNHGGYGVI 191
>gi|688435|gb|AAA62586.1| light repressed protein [Synechococcus sp.]
Length = 192
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 120/202 (59%), Gaps = 18/202 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +T+++ ++VE K+ KA +VDV LSV RI +
Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSV-----ANNARITDKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK H V+
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTH--------VQ 106
Query: 216 EPVTQVV-ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
E ++V+ E+ S E+VRMK+F MPP+T+ +A+EQL+ VDHDFY F N+
Sbjct: 107 EKTSEVLPEDPVPDNSLRSRPRASSEVVRMKYFAMPPMTIDQALEQLQLVDHDFYMFLNK 166
Query: 275 ETGEINIVYKRKAGGYGVIIPK 296
+T IN++Y R GGYGVI P+
Sbjct: 167 DTNAINVIYIRNHGGYGVIQPR 188
>gi|33862486|ref|NP_894046.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9313]
gi|33640599|emb|CAE20388.1| light repressed protein A homolog [Prochlorococcus marinus str. MIT
9313]
Length = 195
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 124/200 (62%), Gaps = 14/200 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLELT ++ + + K+ +A+ +V+E DV LSV + P + +
Sbjct: 1 MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSV-----ARNPSVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ KE+ SDH H G
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLCRQLRRYKERHSDH-HHSPGHRASST-- 111
Query: 217 PVTQVVENDADVQS---EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P T+ V ++A + + ++ + VR K+F MPP++V +A QL+ +DHDFY FR
Sbjct: 112 PTTEAVIDEAPIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARYQLDLIDHDFYLFRE 171
Query: 274 EETGEINIVYKRKAGGYGVI 293
+E+G++ ++Y+R GGYGVI
Sbjct: 172 QESGQLQVIYRRNHGGYGVI 191
>gi|33860957|ref|NP_892518.1| light repressed protein A-like protein [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33639689|emb|CAE18859.1| light repressed protein A homolog [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 194
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 124/201 (61%), Gaps = 16/201 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGPLKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F ++RAEE E +Y+SIDLVS+ + RKLRK KE+ H + + N +K +
Sbjct: 56 EVTIFANG-TIIRAEEKTENLYSSIDLVSNKLCRKLRKYKER---HNKKLHN-NLVKNKN 110
Query: 217 PVTQVVEN----DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
+ +E D D+ +EE + + ++ K+FEM P+++ EA +QL+ +DHDFY FR
Sbjct: 111 SYSNAIEESDSIDKDIFNEEREVRLPEPSIKKKYFEMIPISLEEARKQLDFIDHDFYLFR 170
Query: 273 NEETGEINIVYKRKAGGYGVI 293
N+ E+ ++YKR GGYG+I
Sbjct: 171 NKLNNELQVIYKRNHGGYGLI 191
>gi|352096363|ref|ZP_08957243.1| sigma 54 modulation protein/ribosomal protein S30EA [Synechococcus
sp. WH 8016]
gi|351677057|gb|EHA60208.1| sigma 54 modulation protein/ribosomal protein S30EA [Synechococcus
sp. WH 8016]
Length = 191
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 120/205 (58%), Gaps = 28/205 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NL++T ++ + E K+ +A+ LV+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLDVTPALREYTETKLERAIHHFDDLVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ KE+ SDHG
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLARQLRRFKERHSDHGHR----------- 103
Query: 217 PVTQVVENDADVQSEEEDDNFVDEI--------VRMKFFEMPPLTVSEAIEQLENVDHDF 268
T ND + +D+ ++ +R K+F MP +++ EA QLE +DHDF
Sbjct: 104 -TTPTAANDVLLTERPTEDSLLEGKEAQLPSPGIRRKYFAMPAMSLEEARHQLEMIDHDF 162
Query: 269 YGFRNEETGEINIVYKRKAGGYGVI 293
Y FR++E+GE+ ++Y R GG+GVI
Sbjct: 163 YLFRDKESGELQVIYHRNHGGFGVI 187
>gi|113954524|ref|YP_729824.1| ribosomal subunit interface protein [Synechococcus sp. CC9311]
gi|113881875|gb|ABI46833.1| ribosomal subunit interface protein [Synechococcus sp. CC9311]
Length = 191
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 120/205 (58%), Gaps = 28/205 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NL++T ++ + E K+ +A+ LV+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLDVTPALREYTETKLERAIHHFDDLVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ KE+ SDHG
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLARQLRRFKERHSDHGHR----------- 103
Query: 217 PVTQVVENDADVQSEEEDDNFVDEI--------VRMKFFEMPPLTVSEAIEQLENVDHDF 268
T ND + +D+ ++ VR K+F MP +++ EA QLE +DHDF
Sbjct: 104 -TTPTAANDVLLTERPTEDSLLEGKEAQLPSPGVRRKYFAMPAMSLEEARHQLELIDHDF 162
Query: 269 YGFRNEETGEINIVYKRKAGGYGVI 293
Y FR++E+GE+ ++Y R GG+GVI
Sbjct: 163 YLFRDKESGELQVIYHRNHGGFGVI 187
>gi|123965697|ref|YP_001010778.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9515]
gi|123200063|gb|ABM71671.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9515]
Length = 194
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 125/203 (61%), Gaps = 20/203 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKN+ELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNIELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRLSYQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG--FNRLKV 214
EVT+F ++RAEE E +Y+SIDLVS+ + RKLRK KE RH K +N K
Sbjct: 56 EVTIFASG-TIIRAEEKTENLYSSIDLVSNKLCRKLRKYKE------RHYKNLNYNLEKN 108
Query: 215 REPVTQVVEN----DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
+ T E+ D ++ +++ + + ++ K+FEM P+++ EA +QL+ +DHDFY
Sbjct: 109 KHSFTNTNEHLDSIDKNIFNDKREAKLPEPSIKNKYFEMIPISLEEARKQLDLIDHDFYV 168
Query: 271 FRNEETGEINIVYKRKAGGYGVI 293
FRN++ E+ ++YKRK GGYG+I
Sbjct: 169 FRNKKNNELQVIYKRKHGGYGLI 191
>gi|37520355|ref|NP_923732.1| light-repressed protein LrtA-like protein [Gloeobacter violaceus
PCC 7421]
gi|35211348|dbj|BAC88727.1| glr0786 [Gloeobacter violaceus PCC 7421]
Length = 187
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 115/204 (56%), Gaps = 23/204 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR--- 155
++ I GKN+E+T+ ++++V K+ K L VDV LSV + PRI R
Sbjct: 1 MQFAIHGKNIEVTEPIRDYVSSKLDKVFAHFDQLTMGVDVYLSV-----ARNPRISRSHS 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ ++RAEE+ E +YASIDLV+ + R++RK KE+ + G
Sbjct: 56 AEVTV-QASGTIIRAEEETENLYASIDLVADKLHRQMRKYKERMQKKPKPKTGL------ 108
Query: 216 EPVTQVVENDADV---QSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
V N A + +E+ E+VR K+F MPP++ EA++ L VDHDF+ FR
Sbjct: 109 -----AVANQAPISLPNGDEKATALPKEVVRTKYFAMPPMSPEEALDHLALVDHDFFVFR 163
Query: 273 NEETGEINIVYKRKAGGYGVIIPK 296
N E+GEIN++Y R GGYG+I+P+
Sbjct: 164 NAESGEINVLYARNHGGYGLIVPR 187
>gi|123967988|ref|YP_001008846.1| light repressed protein A [Prochlorococcus marinus str. AS9601]
gi|123198098|gb|ABM69739.1| light repressed protein A [Prochlorococcus marinus str. AS9601]
Length = 194
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 16/201 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNRLKV 214
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE+ + H + K + L
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNKQFKNKDSL-- 112
Query: 215 REPVTQVVEN--DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
P+ + N D + E + + + ++ K+FEM P++ EA +QL+ +DHDFY FR
Sbjct: 113 --PIESMESNFLDKALFKEGTEASLPEPSIKNKYFEMTPISSDEARKQLDLIDHDFYVFR 170
Query: 273 NEETGEINIVYKRKAGGYGVI 293
N++ E+ ++YKR GGYG+I
Sbjct: 171 NKKNNELQVIYKRNHGGYGLI 191
>gi|254431542|ref|ZP_05045245.1| light repressed protein [Cyanobium sp. PCC 7001]
gi|197625995|gb|EDY38554.1| light repressed protein [Cyanobium sp. PCC 7001]
Length = 195
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 11/201 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR--C 156
+KL+I G+NLE+T ++ + E K+ +A+ +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEVTPAIREYTETKLTRAITHFEGMVKEADVHLSV-----ARNPRVPQQIA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR-LKVR 215
EVT+F V+RA+E ++ +YASIDLV+S + R+L + KE+ H RH +R +
Sbjct: 56 EVTMFANG-TVIRAQEHSDNLYASIDLVASKLTRQLNRYKERV--HERHQGPVHRSARDE 112
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
E + ++ ++ VR K+F MPP+++ EA+ QLE +DHDFY FR E
Sbjct: 113 EAGAASLPPPGSSLTDGKEPELPSRGVRRKYFAMPPMSLDEALHQLELIDHDFYVFREAE 172
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
+G+I +VY R GG+GVI PK
Sbjct: 173 SGQIQVVYHRNHGGFGVIQPK 193
>gi|72383571|ref|YP_292926.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Prochlorococcus marinus str. NATL2A]
gi|72003421|gb|AAZ59223.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Prochlorococcus marinus str. NATL2A]
Length = 194
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 120/200 (60%), Gaps = 9/200 (4%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLELT +++++ + K+ KA +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLELTQSLRDYTKTKIDKATHNFQEMVQEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV++ + R+LRK KE+ + H H + V+
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVANKLARQLRKYKERHNSHNVHHNQSTK-SVQN 113
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
TQ + +E ++ + VR K+FEM P+ + +A QL+ +DHDFY FR EE
Sbjct: 114 EDTQNFSSSDHSLTEGKEPHLPSPGVRRKYFEMTPMNIEQARVQLDLIDHDFYLFREEEG 173
Query: 277 GEINIVYKRKAGGYGVIIPK 296
+ ++YKR GGYGVI K
Sbjct: 174 SALRVIYKRNHGGYGVIQEK 193
>gi|427722874|ref|YP_007070151.1| 30S ribosomal protein S30 [Leptolyngbya sp. PCC 7376]
gi|427354594|gb|AFY37317.1| SSU ribosomal protein S30P [Leptolyngbya sp. PCC 7376]
Length = 193
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 122/198 (61%), Gaps = 9/198 (4%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+++ ++VE K+ KA L +VDV LSV + + EV
Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTLATKVDVHLSVANN--ARVNSTHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KEK+ H++ ++ P
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKKFGKKTHIQ--DKTAELLPP 115
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ EN ++ E E+VRMK+F MPP+ + EA+EQL+ VDHDFY F N+E+ E
Sbjct: 116 EPIPENLIGDRAPE----LPAEVVRMKYFAMPPMAIDEALEQLQLVDHDFYMFLNKESNE 171
Query: 279 INIVYKRKAGGYGVIIPK 296
IN++Y R GG+GVI P+
Sbjct: 172 INVIYTRNHGGFGVIQPR 189
>gi|126695758|ref|YP_001090644.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9301]
gi|126542801|gb|ABO17043.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9301]
Length = 194
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 121/201 (60%), Gaps = 16/201 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNRLKV 214
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE+ + H + K + L
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNKQFKNKDSL-- 112
Query: 215 REPVTQVVEN--DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
P+ + N D E + + + ++ K+FEM P++ EA +QL+ +DHDFY FR
Sbjct: 113 --PIESMESNFLDKAFFKEGTEASLPEPSIKNKYFEMTPISSDEARKQLDLIDHDFYVFR 170
Query: 273 NEETGEINIVYKRKAGGYGVI 293
N++ E+ ++YKR GGYG+I
Sbjct: 171 NKKNNELQVIYKRNHGGYGLI 191
>gi|124025165|ref|YP_001014281.1| light repressed protein A-like protein [Prochlorococcus marinus
str. NATL1A]
gi|123960233|gb|ABM75016.1| light repressed protein A-like protein [Prochlorococcus marinus
str. NATL1A]
Length = 194
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 121/200 (60%), Gaps = 9/200 (4%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLELT +++++ + K+ KA +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV++ + R+LRK KE+ + H H + E
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVANKLARQLRKYKERHNSHNVHNNQSTKSVQNE 114
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ +D + E ++ + + VR K+FEM P+T+ +A QL+ +DHDFY FR EE
Sbjct: 115 KIENFSSSDHSL-IEGKEPHLPNPGVRRKYFEMDPMTIEQARVQLDLIDHDFYLFREEEG 173
Query: 277 GEINIVYKRKAGGYGVIIPK 296
+ ++Y+R GGYGVI K
Sbjct: 174 SALRVIYRRNHGGYGVIQEK 193
>gi|88809273|ref|ZP_01124782.1| hypothetical protein WH7805_06256 [Synechococcus sp. WH 7805]
gi|88787215|gb|EAR18373.1| hypothetical protein WH7805_06256 [Synechococcus sp. WH 7805]
Length = 195
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 130/205 (63%), Gaps = 16/205 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NL++T ++++ E K+ +A+ LV+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLDVTPALRDYTETKLDRAIHNFGDLVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ K++ S + K E
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLARQLRRYKDRHS----DHHHSHGHKASE 110
Query: 217 -PVTQ-VVENDADVQS--EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
P T+ V++N+A V+S + ++ VR K+F MPP+T+ +A +QL+ +DHDFY FR
Sbjct: 111 TPTTEAVLDNEAVVESLLDGKEVQLPSPGVRRKYFAMPPMTLEQARQQLDLIDHDFYVFR 170
Query: 273 NEETGEINIVYKRKAGGYGVIIPKG 297
+ ++GE+ ++Y R GGYGVI +G
Sbjct: 171 DSDSGELQVIYHRNHGGYGVIEARG 195
>gi|91069975|gb|ABE10903.1| light repressed protein A-like protein [uncultured Prochlorococcus
marinus clone ASNC2259]
Length = 194
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 120/199 (60%), Gaps = 12/199 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNRLKV 214
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE+ + H + K + L +
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNKQFKNKDSLPI 114
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ ++ ++ E + ++ K+FEM P++ EA +QL+ +DHDFY FRN+
Sbjct: 115 ESMESNFLDKAFFIEGTEA--SLPKPSIKNKYFEMTPISSDEARKQLDLIDHDFYVFRNK 172
Query: 275 ETGEINIVYKRKAGGYGVI 293
+ E+ ++YKR GGYG+I
Sbjct: 173 KNNELQVIYKRNHGGYGLI 191
>gi|33865201|ref|NP_896760.1| light repressed protein A-like protein [Synechococcus sp. WH 8102]
gi|33638885|emb|CAE07182.1| light repressed protein A homolog [Synechococcus sp. WH 8102]
Length = 195
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 122/204 (59%), Gaps = 14/204 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T ++++ + K+ +A + VRE DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEITPALRDYTQTKLERATHHFGNAVREADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDL +S + R+LR+ KE+ S H
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLAASKLARQLRRWKERHS---DHHHSHGHSASTT 111
Query: 217 PVTQVVENDADVQS---EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P T+ V +D+ V + + D VR K+F MPP+++ EA QL+ +DHDFY FR+
Sbjct: 112 PATEAVTDDSQVDGSLLQGREAELPDPGVRRKYFAMPPMSLEEARRQLDLIDHDFYLFRD 171
Query: 274 EETGEINIVYKRKAGGYGVIIPKG 297
+++ ++ ++Y+R GGYGVI +G
Sbjct: 172 KDSDQLQVIYRRNHGGYGVIQARG 195
>gi|427416462|ref|ZP_18906645.1| ribosomal subunit interface protein [Leptolyngbya sp. PCC 7375]
gi|425759175|gb|EKV00028.1| ribosomal subunit interface protein [Leptolyngbya sp. PCC 7375]
Length = 206
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 117/205 (57%), Gaps = 26/205 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ +IQGKN+++T+ + ++ +K+ KAV L+ ++D+ LS+ + + EV
Sbjct: 1 MQTVIQGKNVDITNAINDYAHQKINKAVHHFEGLLTKIDITLSIHNN--ARKQDQQTAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
TLF K V+RA + +Y +IDLV+ I R+L+K KEK+ R PV
Sbjct: 59 TLFAKG-AVIRAVKKHSDLYTAIDLVTDKITRQLKKYKEKQQQ-------------RIPV 104
Query: 219 TQVVENDADVQSEEEDDNFVDE--------IVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
+ V D ++ ++E +VR KFF MPP+++ A+EQLE +DHDFY
Sbjct: 105 STV--QDDGLEPSINPTTIINEQSPTLPPMVVRNKFFAMPPMSIQAALEQLELIDHDFYM 162
Query: 271 FRNEETGEINIVYKRKAGGYGVIIP 295
F+N TGEIN++Y+R GGYG+I P
Sbjct: 163 FQNSSTGEINVLYERNHGGYGLIQP 187
>gi|87301168|ref|ZP_01084009.1| light repressed protein A-like protein [Synechococcus sp. WH 5701]
gi|87284136|gb|EAQ76089.1| light repressed protein A-like protein [Synechococcus sp. WH 5701]
Length = 195
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 124/205 (60%), Gaps = 19/205 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR--C 156
+KL+I G+NL++T ++++ E K+G+A+ + LV+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLDVTPAIRDYTEAKLGRAINHYEGLVKEADVHLSV-----ARNPRVAQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASID+V+ + R+LR+ K++ S+H H G + V +
Sbjct: 56 EVTVFANG-VVIRAQERSENLYASIDMVAGKLSRQLRRYKDRLSNH--HGAG-SPANVGD 111
Query: 217 PVTQ-----VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
Q V+ ND E VR K+F MP +++ +A+ QLE +DHDFY F
Sbjct: 112 DTEQPSLEGVLPNDLIGDREPA---LPVPAVRRKYFSMPAMSLDQALHQLELIDHDFYVF 168
Query: 272 RNEETGEINIVYKRKAGGYGVIIPK 296
R E +G + +VY+R GG+GVI PK
Sbjct: 169 REESSGGLQVVYRRNHGGFGVIQPK 193
>gi|33239849|ref|NP_874791.1| ribosome-associated protein Y [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237375|gb|AAP99443.1| Ribosome-associated protein Y [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 195
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 122/203 (60%), Gaps = 14/203 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I G+NLELT ++ + + K+ KA+ +V+E DV LSV K PR+ +
Sbjct: 1 MKVLIHGRNLELTPALREYTKSKLEKAIHHFGDMVKEADVHLSV-----AKNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E ++ +YASIDLVS+ + R+LR+ KE+ SDH H +R +
Sbjct: 56 EVTVFANG-TVIRAQERSQNLYASIDLVSNKLCRQLRRYKERHSDH--HHSPGHRASI-T 111
Query: 217 PVTQVVENDADVQS---EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P T+ V D + E ++ +R K+F M P+ + +A QL+ +DHDFY F+
Sbjct: 112 PTTEEVLEDKSINGSLVEGKEAKLPKPGIRRKYFPMHPMNIEQAQHQLDLIDHDFYLFKE 171
Query: 274 EETGEINIVYKRKAGGYGVIIPK 296
E+ ++ ++Y+RK GGYGVI K
Sbjct: 172 AESEQLQVIYRRKNGGYGVIQAK 194
>gi|157412813|ref|YP_001483679.1| ribosome-associated protein Y [Prochlorococcus marinus str. MIT
9215]
gi|157387388|gb|ABV50093.1| Ribosome-associated protein Y [Prochlorococcus marinus str. MIT
9215]
Length = 194
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 123/214 (57%), Gaps = 36/214 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE R+ K F+ + +
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKE------RNNKIFHNNQFKN 108
Query: 217 PVTQVVENDADVQSEEEDDNFVDEI--------------VRMKFFEMPPLTVSEAIEQLE 262
+ ++ AD +S F+DE ++ K+FEM P++ EA +QL+
Sbjct: 109 KESFLI---ADTESR-----FLDEALLKDGIEASLPEPSIKNKYFEMNPISSEEARKQLD 160
Query: 263 NVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
+DHDFY FRN + E+ ++YKR GGYG+I K
Sbjct: 161 LIDHDFYVFRNNKNNELQVIYKRNHGGYGLIQSK 194
>gi|254526036|ref|ZP_05138088.1| light repressed protein A [Prochlorococcus marinus str. MIT 9202]
gi|221537460|gb|EEE39913.1| light repressed protein A [Prochlorococcus marinus str. MIT 9202]
Length = 194
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 123/215 (57%), Gaps = 44/215 (20%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF--NRLKV 214
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE R+ K F N+ K
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKE------RNNKIFHNNQFKN 108
Query: 215 RE--PVTQVVENDADVQSEEEDDNFVDEI--------------VRMKFFEMPPLTVSEAI 258
+E P+ AD +S F+DE ++ K+FEM P++ EA
Sbjct: 109 KESFPI-------ADTESR-----FLDEALLKDGIEASLPEPSIKNKYFEMNPISSEEAR 156
Query: 259 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+QL+ +DHDFY FRN + E+ ++YKR GGYG+I
Sbjct: 157 KQLDLIDHDFYVFRNSKNNELQVIYKRNHGGYGLI 191
>gi|91070329|gb|ABE11246.1| light repressed protein A [uncultured Prochlorococcus marinus clone
HF10-88F10]
Length = 194
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 118/216 (54%), Gaps = 40/216 (18%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNRLKV 214
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE+ + H K
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNNQFK------- 107
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEI--------------VRMKFFEMPPLTVSEAIEQ 260
N SE + F+DE ++ K+FEM P++ EA +Q
Sbjct: 108 ---------NKESFPSENTESRFLDEALLKDGIEASLPEPSIKNKYFEMNPISSEEARKQ 158
Query: 261 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
L+ +DHDFY FRN++ ++ ++YKR GGYG+I K
Sbjct: 159 LDLIDHDFYVFRNKKNNQLQVIYKRNHGGYGLIQSK 194
>gi|307105805|gb|EFN54053.1| hypothetical protein CHLNCDRAFT_136132 [Chlorella variabilis]
Length = 254
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 133/211 (63%), Gaps = 16/211 (7%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP----- 151
S+ ++++QG+NLE T +K + E+KVGKAV K+ ++EVDV+LSVRG G+G
Sbjct: 50 STARIVVQGRNLETTPAIKQYCEDKVGKAV-KNFDGIKEVDVKLSVRGNPRGRGTEAHHQ 108
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE----KESDHGRHM- 206
R + EVT+FT +HGVVR EE + +YA++DLVS ++RKL K+KE K + GR
Sbjct: 109 REQIVEVTVFTLRHGVVRVEEHEDDLYAAVDLVSDKLKRKLVKVKERAVQKANWPGRGGP 168
Query: 207 KGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDH 266
KG + + + E+ D ++ + E+VR K E+ ++ EA++Q+ENV H
Sbjct: 169 KGGDTI-----AAHLGEDVVDKLPTDQIAPPLPEVVREKVLEVTAMSTDEAMDQIENVGH 223
Query: 267 DFYGFRNEETGEINIVYKRKAGGYGVIIPKG 297
DFY F++ G + ++Y+RK+ G+GVIIPK
Sbjct: 224 DFYLFKDSADGAMKVLYRRKSHGFGVIIPKA 254
>gi|299471126|emb|CBN78984.1| ribosomal protein rpS22, plastidal [Ectocarpus siliculosus]
Length = 269
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 25/210 (11%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RRCE 157
+I+ G N+E+T+ +K +VE+K+ K + K V +VDV LSV K P + E
Sbjct: 68 IIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSV-----NKNPSVSDNHNTE 122
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+F+K H V+RA ++++ +YAS+D V+ IQRKLR+ KE++ R G L
Sbjct: 123 VTVFSKNH-VIRATDNSDNMYASVDQVTDRIQRKLRRFKERKVAGMRGRSGVGGLS---- 177
Query: 218 VTQVVENDADVQSEEE------DDNFVDE-----IVRMKFFEMPPLTVSEAIEQLENVDH 266
+ E D D + E +D + DE +V+ K F MP +++ EA+ LE + H
Sbjct: 178 -EKTAEKDMDAAAAEAADEDPFEDKYGDEPEAMAVVKTKSFPMPAISLEEAVTCLEYIGH 236
Query: 267 DFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
DFY FRNEET E+N+VYKRK+GG G+I P+
Sbjct: 237 DFYLFRNEETNEVNVVYKRKSGGVGLIEPE 266
>gi|116075038|ref|ZP_01472298.1| hypothetical protein RS9916_25799 [Synechococcus sp. RS9916]
gi|116067235|gb|EAU72989.1| hypothetical protein RS9916_25799 [Synechococcus sp. RS9916]
Length = 195
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 121/200 (60%), Gaps = 14/200 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T ++ + E K+ +AV + +V E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEVTAALREYTESKLERAVQHYDEMVVEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV++ + R+LR+ KE+ S H
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVANKLSRQLRRYKERHS---DHHHSHGHRASTT 111
Query: 217 PVTQVVENDADVQS---EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P T+ V +D+ V + ++ + D VR K+F MPP++V EA QL+ +DHDF+ FR+
Sbjct: 112 PTTEAVLDDSAVDGSLLDGKEAHLPDPGVRRKYFPMPPMSVEEARHQLDLIDHDFFLFRD 171
Query: 274 EETGEINIVYKRKAGGYGVI 293
+ E+ ++Y+R GGYGVI
Sbjct: 172 ASSKELQVIYRRNHGGYGVI 191
>gi|78778781|ref|YP_396893.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Prochlorococcus marinus str. MIT 9312]
gi|78712280|gb|ABB49457.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Prochlorococcus marinus str. MIT 9312]
Length = 194
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 119/199 (59%), Gaps = 12/199 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + + K+ KA + +V+E D+ LS+ K P + +
Sbjct: 1 MKILIHGKNLELTGALKEYTQAKIEKATHHYKDIVKEADIHLSIE-----KNPSVSLQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKV 214
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE+ ++++ K +
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNYKTNYINQFKNNESFPI 114
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ V++ Q E + + ++ K+FEM P++ EA +QL+ +DHDFY FRN+
Sbjct: 115 ESADSNVLDKTLFKQGREA--SLPEPSIKNKYFEMNPISSEEARKQLDLIDHDFYVFRNK 172
Query: 275 ETGEINIVYKRKAGGYGVI 293
+ E+ ++YKR GGYG+I
Sbjct: 173 KNNELQVIYKRNHGGYGLI 191
>gi|148238914|ref|YP_001224301.1| light repressed protein A-like protein [Synechococcus sp. WH 7803]
gi|147847453|emb|CAK23004.1| Light repressed protein A homolog [Synechococcus sp. WH 7803]
Length = 195
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 126/200 (63%), Gaps = 14/200 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NL++T ++++ E K+ +A+ LV+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLDVTPALRDYTETKLDRAIHNFGDLVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ K++ S H
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLARQLRRFKDRHS---DHHHSHGHRASET 111
Query: 217 PVTQ-VVENDADVQS--EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P T+ V++++A V+S + ++ VR K+F MPP+T+ +A +QL+ +DHDFY FR+
Sbjct: 112 PTTESVLDDEAIVESLLDGKEVQLPSPGVRRKYFSMPPMTLEQARQQLDLIDHDFYLFRD 171
Query: 274 EETGEINIVYKRKAGGYGVI 293
+G++ ++Y+R GGYGVI
Sbjct: 172 SASGDLQVIYRRNHGGYGVI 191
>gi|224121048|ref|XP_002318484.1| predicted protein [Populus trichocarpa]
gi|222859157|gb|EEE96704.1| predicted protein [Populus trichocarpa]
Length = 118
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 84/129 (65%), Gaps = 17/129 (13%)
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
GKGPRIR+ EDAE + + KLRKIK+KESDHGRHM
Sbjct: 1 MGKGPRIRK----------------EDAEKSKQVLIWCRQLFN-KLRKIKDKESDHGRHM 43
Query: 207 KGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDH 266
KGFN+LKVREP++Q VEN AD S+ +DD+ +DE V K+F+MPPLTV EAI +L NVDH
Sbjct: 44 KGFNKLKVREPMSQEVENVADTVSQRKDDDNLDEAVHTKYFDMPPLTVHEAIVRLGNVDH 103
Query: 267 DFYGFRNEE 275
FYGF + E
Sbjct: 104 AFYGFGHAE 112
>gi|260436336|ref|ZP_05790306.1| sigma 54 modulation protein [Synechococcus sp. WH 8109]
gi|260414210|gb|EEX07506.1| sigma 54 modulation protein [Synechococcus sp. WH 8109]
Length = 195
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 119/200 (59%), Gaps = 14/200 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T +++++ + K+ +A VRE DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEITPSLRDYTQTKLERATSHFGDAVREADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDL + + R+LR+ KE+ SDH
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLAAGKLARQLRRWKERHSDH---HHSHGHSASHT 111
Query: 217 PVTQVVENDADVQS---EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P T VV + + V+S + + D VR K+F MPP+ + +A QL+ +DHDFY FR
Sbjct: 112 PSTDVVNDASPVESSLLQGREAELPDPGVRRKYFAMPPMGLEDARRQLDLIDHDFYLFRE 171
Query: 274 EETGEINIVYKRKAGGYGVI 293
+E+ ++ ++Y+R GGYGVI
Sbjct: 172 KESDQLQVIYRRNHGGYGVI 191
>gi|78213530|ref|YP_382309.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Synechococcus sp. CC9605]
gi|78197989|gb|ABB35754.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Synechococcus sp. CC9605]
Length = 195
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 118/200 (59%), Gaps = 14/200 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T ++++ + K+ +A VRE DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEITPALRDYTQTKLERATSHFGDAVREADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDL + + R+LR+ KE+ SDH
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLAAGKLARQLRRWKERHSDH---HHSHGHSASHT 111
Query: 217 PVTQVVENDADVQS---EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P T VV + + V++ + + D VR K+F MPP+ + EA QL+ +DHDFY FR
Sbjct: 112 PSTDVVNDASPVEASLLQGREAELPDPGVRRKYFAMPPMGLEEARRQLDLIDHDFYLFRE 171
Query: 274 EETGEINIVYKRKAGGYGVI 293
+E+ ++ ++Y+R GGYGVI
Sbjct: 172 KESDQLQVIYRRNHGGYGVI 191
>gi|78184235|ref|YP_376670.1| sigma 54 modulation protein/ribosomal protein S30EA [Synechococcus
sp. CC9902]
gi|78168529|gb|ABB25626.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Synechococcus sp. CC9902]
Length = 195
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 120/200 (60%), Gaps = 14/200 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I G+NLE+T ++ + K+ +A +RE DV LSV + PR+ +
Sbjct: 1 MKVLIHGRNLEITPALREYTNTKLERATSHFGDAIREADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV + R+LRK KE+ +DH L
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVVGKLARQLRKWKERHADHHHSHGHSASLT--- 111
Query: 217 PVTQVVENDADVQS---EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P T+ V +++ V+ + ++ + VR K+F MPP+T+ +A QL+ +DHDFY FR+
Sbjct: 112 PSTEEVSDESAVEGSLVDGKEAQLPEPGVRRKYFSMPPMTLDDARHQLDVIDHDFYLFRD 171
Query: 274 EETGEINIVYKRKAGGYGVI 293
+TG++ ++Y+R GGYGVI
Sbjct: 172 SKTGDLQVIYRRNHGGYGVI 191
>gi|159902939|ref|YP_001550283.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9211]
gi|159888115|gb|ABX08329.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9211]
Length = 197
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 121/203 (59%), Gaps = 14/203 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR--C 156
+KL+I G+NLELT +++ + + K+ KA+ +V+E DV LS+ K P + +
Sbjct: 1 MKLLIHGRNLELTPSLREYTQSKLEKAIHHFDGIVQEADVHLSI-----AKNPSVPQQIA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E ++ +YASIDLV++ + R+LRK KE+ SDH L
Sbjct: 56 EVTVFANG-TVIRAQERSQNLYASIDLVATKLCRQLRKYKERHSDHHHSHGHSASLT--- 111
Query: 217 PVTQVVENDADVQS---EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P T+ V D + S + ++ + +R K+F MPP++ +A QL+ +DHDFY F+
Sbjct: 112 PTTEAVVEDKAIDSSLIQGKEAHLPTPGIRRKYFSMPPMSTEQARHQLDLIDHDFYMFKE 171
Query: 274 EETGEINIVYKRKAGGYGVIIPK 296
ET ++ ++Y+R GGYG+I K
Sbjct: 172 IETQQLQVIYRRTHGGYGIIQAK 194
>gi|224121008|ref|XP_002318474.1| predicted protein [Populus trichocarpa]
gi|222859147|gb|EEE96694.1| predicted protein [Populus trichocarpa]
Length = 115
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 74/102 (72%), Gaps = 16/102 (15%)
Query: 190 RKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRM----- 244
RKLRKIK+KESDHGRHMKGFN+LKVREP++QVVENDAD S+ +DD+ +DE+ M
Sbjct: 8 RKLRKIKDKESDHGRHMKGFNKLKVREPMSQVVENDADTVSQRKDDDNLDELFYMHLVTI 67
Query: 245 -----------KFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
K+F+MPPLTV EAI +L NVDH FYGF + E
Sbjct: 68 HSIISSNAVHTKYFDMPPLTVDEAIVRLGNVDHAFYGFGHAE 109
>gi|116071120|ref|ZP_01468389.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Synechococcus sp. BL107]
gi|116066525|gb|EAU72282.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Synechococcus sp. BL107]
Length = 195
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 118/200 (59%), Gaps = 14/200 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I G+NLE+T ++ + K+ +A +RE DV LSV + PR+ +
Sbjct: 1 MKVLIHGRNLEITPALREYTNTKLERATSHFGDAIREADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV + R+LRK KE+ +DH L
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVVGKLARQLRKWKERHADHHHSHGHSASLT--- 111
Query: 217 PVTQVVENDADVQS---EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P T+ V +++ V+ + ++ + VR K+F MPP+T+ +A QL+ +DHDFY F++
Sbjct: 112 PSTEEVSDESVVEGSLVDGKEAQLPEPGVRRKYFSMPPMTLDDARHQLDVIDHDFYLFKD 171
Query: 274 EETGEINIVYKRKAGGYGVI 293
TG + ++Y+R GGYGVI
Sbjct: 172 SATGALQVIYRRNHGGYGVI 191
>gi|303289156|ref|XP_003063866.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454934|gb|EEH52239.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 245
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 127/204 (62%), Gaps = 7/204 (3%)
Query: 94 GPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHS-HLVREVDVRLSVRGGEFGKGPR 152
P K+I+QG++LE+T+ ++++ E+K+ KAV H VREVDV S R E +G
Sbjct: 41 APAKGTKVIVQGRHLEITEAIRDYCEQKINKAVSHFDMHDVREVDVTCSARS-EKQQGGD 99
Query: 153 IRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
++ +VT++T+ +GVVR+EE+A+ +YASID VS I+RKLRKIKEK++ G +
Sbjct: 100 LQMTQVTVYTR-NGVVRSEEEADNLYASIDAVSDKIERKLRKIKEKKN---SKKAGKTKA 155
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
+ +V A+ D+ +E V +K+ + T EA E++E++ H FY F+
Sbjct: 156 NPKAQTADIVAAAAEADEARADEIEFEETVGVKYMAVKTSTAMEAAEEMESLGHVFYAFK 215
Query: 273 NEET-GEINIVYKRKAGGYGVIIP 295
N+ GE+N+VYKR AGGY V++P
Sbjct: 216 NKANGGEVNVVYKRDAGGYAVLVP 239
>gi|449018725|dbj|BAM82127.1| probable plastid-specific ribosomal protein PSRP-1 precursor
[Cyanidioschyzon merolae strain 10D]
Length = 297
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 127/251 (50%), Gaps = 50/251 (19%)
Query: 85 PLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRG 144
P +RMS P ++ + + G N++LT ++ HV +K+G V K LV V+V LSV
Sbjct: 57 PRCLRMS--AP-TTTPITVTGDNIDLTSALREHVLDKIGHVVEKFPGLVTRVEVHLSV-- 111
Query: 145 GEFGKGPRIRR---CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD 201
PRI+ CEVT + + V+RA E +YA+IDL + ++R LRK KE+ +
Sbjct: 112 ---AHNPRIKNAHDCEVTAYARGR-VLRASVKMENMYAAIDLTADKLKRTLRKYKERLHE 167
Query: 202 HG-------------------------RHMKGFNRLKVREPVTQVVENDA---------D 227
H M G + PV V++ A +
Sbjct: 168 HSPTADLVEVALLEDRRTRASSPSAPVESMDGLASVPATSPVP--VDDGAPYEGSKHRRE 225
Query: 228 VQSEEEDDNF--VDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKR 285
V+SE E+ E+VR K F MP TV EA+ L+ +DHDFY FRN +TGE+N+VY+R
Sbjct: 226 VESELEEMGIEPSREVVRKKRFPMPLQTVEEAVLCLDYIDHDFYVFRNADTGEVNVVYRR 285
Query: 286 KAGGYGVIIPK 296
+ GG G+I P+
Sbjct: 286 RHGGVGLIEPE 296
>gi|317969070|ref|ZP_07970460.1| light repressed protein A-like protein [Synechococcus sp. CB0205]
Length = 195
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 114/203 (56%), Gaps = 14/203 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T ++ + EEK+ +A +V+E DV LSV + PR+ +
Sbjct: 1 MKLVIHGRNLEVTPAIREYTEEKLKRATSHFDGMVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+ + R+LR+ K++ H
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVAGKLTRQLRRYKDRHG---DHHHSHGHHASET 111
Query: 217 PVTQVVENDADVQS---EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P + D V + ++ VR K+F MP +++ EA+ QLE +DHDFY FR+
Sbjct: 112 PSVVEMAGDDSVSGSLLDGKEAGLPSRGVRRKYFSMPAMSLEEALHQLELIDHDFYLFRD 171
Query: 274 EETGEINIVYKRKAGGYGVIIPK 296
+ E+ +VY+R GG+GVI K
Sbjct: 172 AGSDELQVVYRRNHGGFGVIQAK 194
>gi|427702588|ref|YP_007045810.1| ribosomal subunit interface protein [Cyanobium gracile PCC 6307]
gi|427345756|gb|AFY28469.1| ribosomal subunit interface protein [Cyanobium gracile PCC 6307]
Length = 195
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 11/198 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NL++T ++ + E K+ +A+ +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLDVTPAIREYTETKLNRAISHFDGIVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR-LKVR 215
EVT+F V+RA+E +E +YASIDLV++ + R+L + K++ + R +R
Sbjct: 56 EVTVFANG-VVIRAQERSENLYASIDLVATKLSRQLTRYKDRLQE--RSQGPVHRSAAAE 112
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
E + N ++ + VR K+F MP + + EA+ QL+ +DHDFY FR+
Sbjct: 113 EAGAATLPNPGGSLTDGLEPAVPHRGVRRKYFAMPAMDLEEALHQLDLIDHDFYMFRDAA 172
Query: 276 TGEINIVYKRKAGGYGVI 293
TG+I +VY+R GG+GVI
Sbjct: 173 TGQIQVVYRRNHGGFGVI 190
>gi|224099589|ref|XP_002334465.1| predicted protein [Populus trichocarpa]
gi|222872342|gb|EEF09473.1| predicted protein [Populus trichocarpa]
Length = 71
Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats.
Identities = 58/68 (85%), Positives = 61/68 (89%)
Query: 249 MPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLE 308
MPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYG IIPKGN +A++LEPL
Sbjct: 1 MPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGPIIPKGNYEAERLEPLV 60
Query: 309 VETASSSS 316
VE A S
Sbjct: 61 VEPAREPS 68
>gi|160878413|ref|YP_001557381.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
phytofermentans ISDg]
gi|160427079|gb|ABX40642.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
phytofermentans ISDg]
Length = 178
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 114/198 (57%), Gaps = 21/198 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ II GKN+++T+ +K+ + EK+GK + K+ + E+ V LSV ++ EV
Sbjct: 1 MRYIISGKNIDVTEGLKSAIYEKIGK-LEKYFNPEAEIHVTLSVEKDR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +VRAE+ + +YASIDLV +I+R+L+K K K D + FN
Sbjct: 53 TI-PMKGNIVRAEQVSNDMYASIDLVEEVIERQLKKYKSKLKDMNQSAANFN-------- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
E+ + S+EED N I R+K F M P+ EA Q+E + H+FY FRN ET E
Sbjct: 104 PSFFEDVLNEDSDEEDIN----ITRVKRFAMKPMDAEEACVQMELLGHNFYVFRNAETDE 159
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 160 VNVVYKRKGNSYGLIEPE 177
>gi|224110140|ref|XP_002333151.1| predicted protein [Populus trichocarpa]
gi|222834989|gb|EEE73438.1| predicted protein [Populus trichocarpa]
Length = 102
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 70/98 (71%), Gaps = 16/98 (16%)
Query: 194 KIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRM--------- 244
KIK+KESDHGRHMKGFN+ KVREP++QVVENDAD S+ +DD+ +DE+ M
Sbjct: 2 KIKDKESDHGRHMKGFNKFKVREPMSQVVENDADTVSQRKDDDNLDELFYMHLVTIHSII 61
Query: 245 -------KFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
K+F+MPP+TV EAI +L NVDH FYGFR+ E
Sbjct: 62 SSNAVHTKYFDMPPVTVDEAIVRLGNVDHAFYGFRHAE 99
>gi|164687099|ref|ZP_02211127.1| hypothetical protein CLOBAR_00725 [Clostridium bartlettii DSM
16795]
gi|164603984|gb|EDQ97449.1| ribosomal subunit interface protein [Clostridium bartlettii DSM
16795]
Length = 187
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 19/196 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K++I GK +ELTD +K VE+K+ K + ++ H EV V +S R + ++ EV
Sbjct: 7 MKILITGKKIELTDGIKGAVEDKLSK-LDRYLHEDTEVKVTVSARKAK-------QKIEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAE+ E +YA+ID+V + ++LR+ K K +KG + K +E +
Sbjct: 59 TIIPINGPIIRAEDSEENLYAAIDVVYDKLNKQLRRYKNK-------LKGKYQSKGQESI 111
Query: 219 T-QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
Q +E++A +E++D F I R K F+M P++ EA+ Q+E V HDFY FRN +T
Sbjct: 112 RFQNIEDNA---AEDKDGEFDIVIERHKKFDMKPMSPEEAVLQMELVGHDFYMFRNIDTD 168
Query: 278 EINIVYKRKAGGYGVI 293
EI+IVY+R+ GGYG+I
Sbjct: 169 EISIVYRRETGGYGLI 184
>gi|94985484|ref|YP_604848.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
geothermalis DSM 11300]
gi|94555765|gb|ABF45679.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
geothermalis DSM 11300]
Length = 186
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 112/193 (58%), Gaps = 13/193 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+++TD ++++VEEK+ + + + S + + V L+VR + R R EV L
Sbjct: 6 LSGRNVDVTDAMRDYVEEKLTR-LDRFSDQITDARVVLTVR--DVRDAGRRNRVEVQL-N 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+G++RAEE +YA+ID S +++R+LRK K K H + P Q
Sbjct: 62 VPNGIIRAEEHHADMYAAIDRASDVLERQLRKFKTKYLRHRQEAA---------PPPQPG 112
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ADV + +D F EIVR K F++ P++ +A+ Q+E + HDFY F+N +TG +V
Sbjct: 113 LAEADVNAGLDDTEFRPEIVRTKRFDLRPMSPEDAVTQMEALGHDFYVFKNMDTGGCAVV 172
Query: 283 YKRKAGGYGVIIP 295
Y+R+ G YG+I P
Sbjct: 173 YRRRDGHYGLIEP 185
>gi|323456455|gb|EGB12322.1| hypothetical protein AURANDRAFT_59830, partial [Aureococcus
anophagefferens]
Length = 222
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 119/197 (60%), Gaps = 23/197 (11%)
Query: 93 DGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR 152
DG +S+V NL++TD+++++VE+K+G + K + + + D LSV + P
Sbjct: 45 DGAISTV----SANNLKMTDSMRDYVEDKIGTVISKFAGVAQRCDTHLSVM-----RNPA 95
Query: 153 IRR---CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
+ EV +F K VVRAEE + ++Y+SIDLV+ + RKLRK+KE++ G+ K
Sbjct: 96 VSDSDVAEVVVFCKGE-VVRAEERSPSMYSSIDLVADKVARKLRKVKERK--EGKRSKP- 151
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNF-VDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
K++ + + +E+ A EEE F ++R K + MP ++ +A+ ++ +DHDF
Sbjct: 152 ---KLKVSLAEAIESTA---LEEEPPLFDATTLIRKKKYPMPEQSLVDAMVCMDGLDHDF 205
Query: 269 YGFRNEETGEINIVYKR 285
Y F++EETG+IN++YKR
Sbjct: 206 YMFKSEETGQINVIYKR 222
>gi|337744475|ref|YP_004638637.1| hypothetical protein KNP414_00116 [Paenibacillus mucilaginosus
KNP414]
gi|379718115|ref|YP_005310246.1| hypothetical protein PM3016_110 [Paenibacillus mucilaginosus 3016]
gi|386720675|ref|YP_006187000.1| hypothetical protein B2K_00570 [Paenibacillus mucilaginosus K02]
gi|336295664|gb|AEI38767.1| YvyD [Paenibacillus mucilaginosus KNP414]
gi|378566787|gb|AFC27097.1| YvyD [Paenibacillus mucilaginosus 3016]
gi|384087799|gb|AFH59235.1| hypothetical protein B2K_00570 [Paenibacillus mucilaginosus K02]
Length = 185
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 116/200 (58%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL--VREVDVRLSVRGGEFGKGPRIRRC 156
+K I+G N+E+TD +++HVE+K+ + + K+ EV V LSV G ++
Sbjct: 1 MKFNIRGVNIEVTDALRDHVEKKLSR-LEKYFEAPPTSEVSVSLSVLKG-------LQAV 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL-KVR 215
EVT+ + ++RAEE +YAS+DLV ++R++RK K K + R G L +
Sbjct: 53 EVTI-PLPNLLLRAEERQADMYASVDLVVDKLERQIRKAKTKANRKIRQEGGLKDLFRAS 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EP +D+ V EE+D+F E+VR K F + P+ + EAI Q+ V H+F+ F N +
Sbjct: 112 EP------DDSYVAVHEEEDDF--ELVRTKRFTLKPMDIDEAILQMNMVGHNFFVFANSD 163
Query: 276 TGEINIVYKRKAGGYGVIIP 295
T E+N+VYKR G YG+I P
Sbjct: 164 TSEVNVVYKRNDGKYGLIEP 183
>gi|219130463|ref|XP_002185384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403098|gb|EEC43053.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 209
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 14/207 (6%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAV--LKHSHLVREVDVRLSVRGGEFGKGPRIR 154
+ V +II G+N+ELT + HV +++G + L + ++E DV LSV K P+++
Sbjct: 9 TEVPVIINGQNIELTPALVEHVNKRIGGQINKLASNGAIQECDVILSV-----SKNPKVK 63
Query: 155 ---RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE--SDHGRHMKGF 209
R EV K ++ E + +YASID S + RKL K K+ HG G
Sbjct: 64 NGHRVEVVTNLKGTSIICHNESPD-MYASIDAASHALYRKLCKYKDNRVAGWHGGEKMGN 122
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMP-PLTVSEAIEQLENVDHDF 268
+ ++V E + V E A +EE D I ++K F++ P++V EA+ L+ +DHDF
Sbjct: 123 DIMEVLENLEDVSEYTATPVAEEYVDPEAPTITKVKNFDLTKPMSVQEAVFALDYIDHDF 182
Query: 269 YGFRNEETGEINIVYKRKAGGYGVIIP 295
Y FRN ET EI++VYKR GG G++ P
Sbjct: 183 YVFRNAETNEISVVYKRHVGGIGLVEP 209
>gi|302385042|ref|YP_003820864.1| ribosomal subunit interface protein [Clostridium saccharolyticum
WM1]
gi|302195670|gb|ADL03241.1| ribosomal subunit interface protein [Clostridium saccharolyticum
WM1]
Length = 175
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+T ++ VE+K+GK + + E VRLSV+ +++ EV
Sbjct: 1 MRFTITGRNIEVTPGLREAVEDKLGK-LDRFFAPATEATVRLSVQ-------KEMQKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H ++RAEE + +Y SIDLV I++R+L+K K K D + F+
Sbjct: 53 TIPVKGH-IIRAEESSTDMYVSIDLVEEILERQLKKYKNKLIDKKLNTPSFSA------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
A ++ E + D+++ EIV+ K F + P+ EA Q+E + H FY F N +T E
Sbjct: 105 -------AFIEEETQTDDYI-EIVKTKKFAVKPMDPEEACVQMELLGHSFYVFLNADTDE 156
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK G YG+I P+
Sbjct: 157 VNVVYKRKGGSYGLIEPE 174
>gi|325283884|ref|YP_004256425.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
proteolyticus MRP]
gi|324315693|gb|ADY26808.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
proteolyticus MRP]
Length = 186
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 109/197 (55%), Gaps = 19/197 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ +E+TD ++ +V+EK+ + + + + + V L+VR + R R EV +
Sbjct: 6 LSGRGVEITDPLRGYVDEKLSR-LDRFNGDITSARVTLTVR--DVKNAARRNRVEVQI-N 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PVT 219
HG++RAEE +YA+ID S +++R+LRK K + LK R+ P
Sbjct: 62 VPHGIIRAEETHADMYAAIDKASDVLERQLRKFKTR------------LLKQRQEGAPQP 109
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
Q + Q+ E+D EIVR K FEM P+T +A+ Q+E + HDFY F+N +T
Sbjct: 110 QPGPAELAAQTAEDDAELQPEIVRQKQFEMRPMTPQDAVFQMEALGHDFYVFKNMDTDSC 169
Query: 280 NIVYKRKAGGYGVIIPK 296
+VY+RK G YG+I PK
Sbjct: 170 GVVYRRKDGHYGLIEPK 186
>gi|291562723|emb|CBL41539.1| SSU ribosomal protein S30P/sigma 54 modulation protein
[butyrate-producing bacterium SS3/4]
Length = 175
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 111/198 (56%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I GKN+ +T +K+ VE K+GK + ++ EV V LSV G ++ EV
Sbjct: 1 MRYTISGKNINITPGLKDAVESKLGK-LERYFSPDTEVQVTLSVEKGR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K ++RAE+D+ +Y S+DLV II+R+++K K K D ++ FN
Sbjct: 53 TI-PVKGSIIRAEQDSSDMYVSVDLVEEIIERQIKKYKTKIVDKKQNALAFN-------- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+A +Q E E + V+ IV+ K F M P+ EA Q+E + H+F+ F N +T E
Sbjct: 104 ------EAFLQEESEPEETVN-IVKTKRFAMKPMDAEEACVQMELLGHNFFMFLNADTNE 156
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 157 VNVVYKRKGNSYGLIEPE 174
>gi|223994401|ref|XP_002286884.1| light-repressed protein a [Thalassiosira pseudonana CCMP1335]
gi|220978199|gb|EED96525.1| light-repressed protein a [Thalassiosira pseudonana CCMP1335]
Length = 198
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 113/200 (56%), Gaps = 13/200 (6%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT- 159
+++ G N++LT + ++V K+ K V K V DV L+V K P+++
Sbjct: 7 IVVTGDNIDLTPALSDYVNSKIEKTVGKLPLAVSHCDVYLTVN-----KNPKVKDAHTAE 61
Query: 160 -LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNRLKVRE 216
+ T K R E + +YASIDLV++ + RKLRK KE+ D HG G N + E
Sbjct: 62 VVTTLKGTTFRVAESSPDMYASIDLVAARLARKLRKYKERRLDGYHGGPNMGEN---IAE 118
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ + ++++ +EEE D+ V K + P+++ EAI L+ +DHDFY FR+EET
Sbjct: 119 VLNAIEVDESEDGAEEESYIDPDQAVVTKV-KSTPISIKEAIFALDYIDHDFYVFRDEET 177
Query: 277 GEINIVYKRKAGGYGVIIPK 296
E+++VYKR AGG G+I P+
Sbjct: 178 NEVSVVYKRNAGGVGLIQPE 197
>gi|328955034|ref|YP_004372367.1| 30S ribosomal protein S30P; sigma 54 modulation protein
[Coriobacterium glomerans PW2]
gi|328455358|gb|AEB06552.1| SSU ribosomal protein S30P;sigma 54 modulation protein
[Coriobacterium glomerans PW2]
Length = 194
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 108/194 (55%), Gaps = 10/194 (5%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ +TD ++ HV EK+ A+ VD L P I EVTL
Sbjct: 5 VSGRKTTVTDALRAHVTEKIADALKVFDIEPMTVDAVLRYEKNPSNPQPAI--VEVTLRV 62
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+K V+RA E +YA+IDL + ++R+LRK K K D +G + +V PV Q V
Sbjct: 63 RK-SVIRAVEHGADMYAAIDLAAEKVERQLRKYKTKVVDM--RQQGASAAQVV-PV-QRV 117
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
E+ AD+ E+ D D++VR K E+ P++ +A+ Q++ + HDFY F N+ TG IN+V
Sbjct: 118 EDLADLLVPEDQD---DQLVREKIIEITPMSEEQALVQIDLLGHDFYVFENDATGLINVV 174
Query: 283 YKRKAGGYGVIIPK 296
Y RK GGYG+I PK
Sbjct: 175 YHRKNGGYGIIKPK 188
>gi|266622719|ref|ZP_06115654.1| ribosomal subunit interface protein [Clostridium hathewayi DSM
13479]
gi|288865529|gb|EFC97827.1| ribosomal subunit interface protein [Clostridium hathewayi DSM
13479]
Length = 175
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+T ++ VE+K+GK + + E VRLSV+ I++ EV
Sbjct: 1 MRFTITGRNIEVTQGLREAVEDKLGK-LDRFFAPATEAVVRLSVQKD-------IQKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H ++RAEE + +Y SIDLV I++R+L+K K K D + F+ ++E
Sbjct: 53 TIPVKGH-IIRAEESSSDMYVSIDLVEEILERQLKKYKNKLIDKKQSAPSFSEAFLQE-- 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
D +EEE +IV+ K F + P+ EA Q+E + H+FY F N +T E
Sbjct: 110 --------DASAEEEI-----QIVKSKKFAVKPMDPEEACVQMELLGHNFYVFLNADTEE 156
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK G YG+I P+
Sbjct: 157 VNVVYKRKGGTYGLIEPE 174
>gi|386857075|ref|YP_006261252.1| Sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
gobiensis I-0]
gi|380000604|gb|AFD25794.1| Sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
gobiensis I-0]
Length = 187
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 114/194 (58%), Gaps = 14/194 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+++TD ++++VEEK+ + + ++S + + V L+VR + R R EV L
Sbjct: 6 LAGRNVDVTDAMRDYVEEKLTR-LDRYSDQITDARVTLTVR--DVRDSGRRNRVEVQLNV 62
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
G++RAEE +YA+ID S +++R+LRK K R+MK + + P +
Sbjct: 63 PS-GIIRAEEHHADMYAAIDKASDVLERQLRKFK------TRYMK---QRQDAIPAPEPG 112
Query: 223 ENDADVQSEEED-DNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ADV + +D F EIVR K FE+ P++ +A Q+E +DHDFY F+N +G +
Sbjct: 113 PAEADVAAGLDDVSEFTPEIVRQKRFELRPMSPEDAAAQMEALDHDFYVFKNMVSGLTGV 172
Query: 282 VYKRKAGGYGVIIP 295
VY+R+ G YG+I P
Sbjct: 173 VYRRRDGHYGLIEP 186
>gi|167767704|ref|ZP_02439757.1| hypothetical protein CLOSS21_02239 [Clostridium sp. SS2/1]
gi|429761691|ref|ZP_19294107.1| ribosomal subunit interface protein [Anaerostipes hadrus DSM 3319]
gi|167710443|gb|EDS21022.1| ribosomal subunit interface protein [Clostridium sp. SS2/1]
gi|429183126|gb|EKY24195.1| ribosomal subunit interface protein [Anaerostipes hadrus DSM 3319]
Length = 179
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 117/203 (57%), Gaps = 27/203 (13%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--VDVRLSVRGGEFGKGPRI 153
+ ++K II GKN+E+T+ +K +EEK+G+ +LV + V+V LSV+ G
Sbjct: 1 MGAMKFIISGKNIEVTEGIKAAIEEKLGRL---DKYLVDDTIVNVTLSVQKGR------- 50
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
++ EVT+ K H ++RAEE +E +Y SIDLV +I+R++R+ K + + F +
Sbjct: 51 QKIEVTIPMKGH-IIRAEEGSEDMYVSIDLVVDVIERQIRRYKTRLMNQKYDGTSFKQ-- 107
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
++ E++ ++ I+R K F + P+ V EA Q+E + HDF+ FRN
Sbjct: 108 ------------EFMEQEDDVEDDEIRIIRSKKFAIKPMDVEEACVQMELLGHDFFVFRN 155
Query: 274 EETGEINIVYKRKAGGYGVIIPK 296
+T E+N+VYKRK YG+I P+
Sbjct: 156 ADTFEVNVVYKRKGNTYGLIEPE 178
>gi|210630452|ref|ZP_03296455.1| hypothetical protein COLSTE_00339 [Collinsella stercoris DSM 13279]
gi|210160454|gb|EEA91425.1| ribosomal subunit interface protein [Collinsella stercoris DSM
13279]
Length = 194
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ +TD ++ HV+EK+G+A+ DV L P I EVT+
Sbjct: 5 VSGRKTTVTDALRAHVDEKIGEALKVFDIEPMTADVVLRYEKNPSNPNPAI--VEVTV-R 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+R E +YA+IDL + + R+LRK K + D+ + + EPV +
Sbjct: 62 ARGSVIRVAEHGADMYAAIDLAADKVTRQLRKFKTRVVDNRQQGLSAAEVAPVEPVADL- 120
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
AD+ EE+D D++VR+K E+ P+T +A+ Q + + HDFY F N TG IN+V
Sbjct: 121 ---ADLLIPEEED---DQLVRVKEIELTPMTEEQALVQTDLLGHDFYVFENSTTGLINVV 174
Query: 283 YKRKAGGYGVIIPK 296
Y RK GGYG+I PK
Sbjct: 175 YHRKNGGYGIIKPK 188
>gi|313896903|ref|ZP_07830450.1| ribosomal subunit interface protein [Selenomonas sp. oral taxon 137
str. F0430]
gi|312974350|gb|EFR39818.1| ribosomal subunit interface protein [Selenomonas sp. oral taxon 137
str. F0430]
Length = 181
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 110/191 (57%), Gaps = 20/191 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENVGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF + V
Sbjct: 58 VRGVLLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFK--------AEAV 108
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
E A SEE+D + +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+V
Sbjct: 109 ETFAAPVSEEDD---IYPVVKRKSFALQPMDVQEAIMQMNLLNHHFFVFRNAETNEVNVV 165
Query: 283 YKRKAGGYGVI 293
Y R G Y +I
Sbjct: 166 YSRNDGKYALI 176
>gi|422343487|ref|ZP_16424415.1| hypothetical protein HMPREF9432_00475 [Selenomonas noxia F0398]
gi|355378794|gb|EHG25974.1| hypothetical protein HMPREF9432_00475 [Selenomonas noxia F0398]
Length = 181
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 108/191 (56%), Gaps = 20/191 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ + E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENIGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF + V
Sbjct: 58 VRGVLLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFK--------AEAV 108
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
E A EE+D + IV+ K F + P+ EAI Q+ ++H F+ FRN ETGE+N+V
Sbjct: 109 ETFAQAVPEEDD---IYPIVKTKRFALQPMDAQEAIMQMNLLNHHFFVFRNAETGEVNVV 165
Query: 283 YKRKAGGYGVI 293
Y R G Y I
Sbjct: 166 YGRHDGKYAAI 176
>gi|317121046|ref|YP_004101049.1| 30S ribosomal protein S30P;sigma 54 modulation protein
[Thermaerobacter marianensis DSM 12885]
gi|315591026|gb|ADU50322.1| SSU ribosomal protein S30P;sigma 54 modulation protein
[Thermaerobacter marianensis DSM 12885]
Length = 187
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 108/196 (55%), Gaps = 16/196 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CEVTLF 161
I GKN+++T+ +K + KVGK + + V LS+ R R EVT+
Sbjct: 5 IYGKNVDVTEALKEYARRKVGKVARYFTGTPLQAQVTLSIE--------RDRHIVEVTIP 56
Query: 162 TKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
G+ +RAEE+++ +YASIDLV ++R++RK K + + R ++ V E
Sbjct: 57 VPNSGLLIRAEEESDDMYASIDLVVDKLERQIRKFKTRLNRKARRLEATTGQAVPEADAP 116
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
V E D + EEE +VR K F + P+TV EAI Q+ + HDF+ F N TGEIN
Sbjct: 117 VDEPDW-TEGEEEG-----RVVRTKRFAVKPMTVDEAILQMNLLGHDFFVFANATTGEIN 170
Query: 281 IVYKRKAGGYGVIIPK 296
++Y+R+ G YG+I P+
Sbjct: 171 VLYRRRDGQYGLIEPE 186
>gi|331003136|ref|ZP_08326646.1| hypothetical protein HMPREF0491_01508 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412967|gb|EGG92344.1| hypothetical protein HMPREF0491_01508 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 178
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 111/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+TD +K VEEK+ K + K+ E + LSV+ + EV
Sbjct: 1 MRYTITGRNIEITDGLKKAVEEKLHK-LEKYFTADTEARITLSVQ-------KEAHKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ TK+ G++RAEE ++ +Y SID V II+++++K K K D + F+ + + V
Sbjct: 53 TIPTKQ-GLIRAEEVSQDMYVSIDKVQDIIEKQIKKFKNKLIDKKQAAMSFSDFFINDEV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
NDAD + E + IV+ K F + P+ EA Q+E + HDFY FRN + E
Sbjct: 112 -----NDADDEDEIK-------IVKTKRFSIKPMDPEEACLQMELLGHDFYVFRNAVSDE 159
Query: 279 INIVYKRKAGGYGVIIP 295
+ +VYKRK G YG+I P
Sbjct: 160 VCVVYKRKDGKYGIIEP 176
>gi|317497045|ref|ZP_07955373.1| sigma 54 modulation protein/S30EA ribosomal protein
[Lachnospiraceae bacterium 5_1_63FAA]
gi|291558926|emb|CBL37726.1| ribosomal subunit interface protein [butyrate-producing bacterium
SSC/2]
gi|316895705|gb|EFV17859.1| sigma 54 modulation protein/S30EA ribosomal protein
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 176
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 115/200 (57%), Gaps = 27/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--VDVRLSVRGGEFGKGPRIRRC 156
+K II GKN+E+T+ +K +EEK+G+ +LV + V+V LSV+ G ++
Sbjct: 1 MKFIISGKNIEVTEGIKAAIEEKLGRL---DKYLVDDTIVNVTLSVQKGR-------QKI 50
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ K H ++RAEE +E +Y SIDLV +I+R++R+ K + + F +
Sbjct: 51 EVTIPMKGH-IIRAEEGSEDMYVSIDLVVDVIERQIRRYKTRLMNQKYDGTSFKQ----- 104
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
++ E++ ++ I+R K F + P+ V EA Q+E + HDF+ FRN +T
Sbjct: 105 ---------EFMEQEDDVEDDEIRIIRSKKFAIKPMDVEEACVQMELLGHDFFVFRNADT 155
Query: 277 GEINIVYKRKAGGYGVIIPK 296
E+N+VYKRK YG+I P+
Sbjct: 156 FEVNVVYKRKGNTYGLIEPE 175
>gi|302336209|ref|YP_003801416.1| SSU ribosomal protein S30P;sigma 54 modulation protein [Olsenella
uli DSM 7084]
gi|301320049|gb|ADK68536.1| SSU ribosomal protein S30P;sigma 54 modulation protein [Olsenella
uli DSM 7084]
Length = 192
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 109/198 (55%), Gaps = 15/198 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
V + I G+ + +TD +++HV EKVG+++ ++ + + +R + P + CEV
Sbjct: 2 VDIKISGRKVSVTDAMRDHVNEKVGESLKVFD--IKPMTCDVVLRVDKNPSNPDRKMCEV 59
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F + + VVR E + +YA+ID + + R+LRK K + D + V PV
Sbjct: 60 TVFVRDN-VVRVEASSADMYAAIDEAADKVARQLRKYKTRVIDRRQR-------PVPMPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
++ AD+ +E+D +VR K ++ P+T EA+ Q + + HDFY F N TG
Sbjct: 112 PSSSDDLADLIVDEDD-----ALVREKLIDLRPMTEEEALVQTDLIGHDFYVFENATTGL 166
Query: 279 INIVYKRKAGGYGVIIPK 296
IN++Y R GGYG+I P+
Sbjct: 167 INVIYHRHNGGYGIIKPR 184
>gi|229816737|ref|ZP_04447023.1| hypothetical protein COLINT_03784 [Collinsella intestinalis DSM
13280]
gi|229807713|gb|EEP43529.1| hypothetical protein COLINT_03784 [Collinsella intestinalis DSM
13280]
Length = 194
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ +TD ++ HV+EK+G+A+ DV L P I EVT+
Sbjct: 5 VSGRKTTVTDALRAHVDEKIGEALKVFDIEPMTADVVLRYEKNPSNPNPAI--VEVTV-R 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+R E +YA+IDL + + R+LRK K + D+ + + EPV +
Sbjct: 62 ARGSVIRVAEHGADMYAAIDLAAEKVTRQLRKFKTRVVDNRQQGLSAAEVAPVEPVADL- 120
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
AD+ E++D D++VR+K E+ P+T EA+ Q + + HDFY F N TG +N+V
Sbjct: 121 ---ADLLLPEDED---DQLVRVKEVELTPMTDEEALVQTDLIGHDFYVFENSVTGLVNVV 174
Query: 283 YKRKAGGYGVIIPK 296
Y RK GGYG+I PK
Sbjct: 175 YHRKNGGYGIIKPK 188
>gi|317490374|ref|ZP_07948858.1| sigma 54 modulation protein/S30EA ribosomal protein [Eggerthella
sp. 1_3_56FAA]
gi|316910509|gb|EFV32134.1| sigma 54 modulation protein/S30EA ribosomal protein [Eggerthella
sp. 1_3_56FAA]
Length = 193
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 113/196 (57%), Gaps = 13/196 (6%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ + G+ + +TD ++ + EEK+G + V+ LV EV + + PR CEV
Sbjct: 3 ITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEVVLFVEKNPA----NPRPAVCEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR-LKVREP 217
TL TK H ++R EE E +YA+ID+ ++ + R+LRK K K D R ++ + +++ EP
Sbjct: 59 TLRTKGH-IIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVD--RKLRAADETIRMAEP 115
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ DV ++ DE+VR+K E PLT EA+ +++ + HDF+ + + ++G
Sbjct: 116 AAA---GELDVDGLMQELAADDEVVRVKTIEFEPLTEEEALVKIDLLGHDFFAYTDRDSG 172
Query: 278 EINIVYKRKAGGYGVI 293
+N++Y+R GGYG++
Sbjct: 173 MVNVLYRRDDGGYGLL 188
>gi|292670013|ref|ZP_06603439.1| ribosomal subunit interface protein [Selenomonas noxia ATCC 43541]
gi|292648314|gb|EFF66286.1| ribosomal subunit interface protein [Selenomonas noxia ATCC 43541]
Length = 181
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 108/191 (56%), Gaps = 20/191 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ + E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENIGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF + V
Sbjct: 58 VRGVLLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFK--------AEAV 108
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
E A EE+D + IV+ K F + P+ EAI Q+ ++H F+ FRN ETGE+N+V
Sbjct: 109 ETFAQAVPEEDD---IYPIVKTKRFALQPMDAQEAIMQMNLLNHHFFVFRNAETGEVNVV 165
Query: 283 YKRKAGGYGVI 293
Y R G Y I
Sbjct: 166 YGRHDGKYASI 176
>gi|257792504|ref|YP_003183110.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Eggerthella lenta DSM 2243]
gi|257476401|gb|ACV56721.1| sigma 54 modulation protein/ribosomal protein S30EA [Eggerthella
lenta DSM 2243]
Length = 191
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 112/195 (57%), Gaps = 13/195 (6%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ + G+ + +TD ++ + EEK+G + V+ LV E+ + + PR CEV
Sbjct: 3 ITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEIVLFVEKNPA----NPRPAVCEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
TL TK H ++R EE E +YA+ID+ ++ + R+LRK K K D R ++ + EP
Sbjct: 59 TLRTKGH-IIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVD--RKLRAADETIRIEP- 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ E D D +E D DE+VR+K E PLT EA+ +++ + HDF+ + + ++G
Sbjct: 115 SAAGELDVDGLMQELSD---DEVVRVKTIEFEPLTEEEALVKIDLLGHDFFAYTDRDSGL 171
Query: 279 INIVYKRKAGGYGVI 293
+N++Y+R GGYG++
Sbjct: 172 VNVLYRRDDGGYGLL 186
>gi|255654233|ref|ZP_05399642.1| putative RNA-binding protein [Clostridium difficile QCD-23m63]
Length = 183
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II GK +ELTD +KN +E K+ K + + H +V V +S R ++ EV
Sbjct: 1 MNIIISGKQIELTDAIKNKIESKLSK-LDNYIHPDTDVKVTVSARKAR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T ++RAE+ E +Y +ID+V + ++L+K K++ D + K R +
Sbjct: 53 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSI-RFQ----- 106
Query: 219 TQVVENDADVQSEEEDDNFVDE-----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
DA++ +E +++ DE I R K F + P++ EA+ Q+E + HDFY F+N
Sbjct: 107 ------DAEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN 160
Query: 274 EETGEINIVYKRKAGGYGVI 293
++ EI +VYKR GGYG+I
Sbjct: 161 IDSDEIAVVYKRNNGGYGII 180
>gi|325833624|ref|ZP_08166073.1| ribosomal subunit interface protein [Eggerthella sp. HGA1]
gi|325485548|gb|EGC88017.1| ribosomal subunit interface protein [Eggerthella sp. HGA1]
Length = 193
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 113/196 (57%), Gaps = 13/196 (6%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ + G+ + +TD ++ + EEK+G + V+ LV EV + + PR CEV
Sbjct: 3 ITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEVVLFVEKNPA----NPRPAVCEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR-LKVREP 217
TL TK H ++R EE E +YA+ID+ ++ + R+LRK K K D R ++ + +++ EP
Sbjct: 59 TLRTKGH-IIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVD--RKLRAADETIRMAEP 115
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ DV ++ DE+VR+K E PLT EA+ +++ + HDF+ + + ++G
Sbjct: 116 AAA---GELDVDGLMQELAADDEVVRVKTIEFEPLTEEEALVKIDLLGHDFFAYTDRDSG 172
Query: 278 EINIVYKRKAGGYGVI 293
+N++Y+R GGYG++
Sbjct: 173 LVNVLYRRDDGGYGLL 188
>gi|373471398|ref|ZP_09562447.1| ribosomal subunit interface protein [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371760099|gb|EHO48802.1| ribosomal subunit interface protein [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 178
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 111/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+TD +K VEEK+ K + K+ E + LSV+ + EV
Sbjct: 1 MRYTITGRNIEITDGLKKAVEEKLHK-LGKYFTEETEAKITLSVQ-------KEAHKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ TK+ G++RAEE + +Y SID V II+R+++K K K D + F+ +RE
Sbjct: 53 TIPTKQ-GLIRAEEVSGDMYISIDKVEDIIERQIKKFKNKLVDKKQSSVSFSDFFIREDY 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ S+EED+ +IV+ K F + P+ EA Q+E + HDFY FRN + E
Sbjct: 112 SD---------SDEEDEI---KIVKTKRFSIKPMDPEEACLQMELLGHDFYVFRNALSDE 159
Query: 279 INIVYKRKAGGYGVIIP 295
I +VYKRK G YG+I P
Sbjct: 160 ICVVYKRKDGKYGIIEP 176
>gi|328951064|ref|YP_004368399.1| sigma 54 modulation protein/ribosomal protein S30EA [Marinithermus
hydrothermalis DSM 14884]
gi|328451388|gb|AEB12289.1| sigma 54 modulation protein/ribosomal protein S30EA [Marinithermus
hydrothermalis DSM 14884]
Length = 183
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 103/193 (53%), Gaps = 21/193 (10%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
G+N+E+T+ +KN++++KV + H+V + V LSV G P + R F
Sbjct: 8 GRNVEVTEALKNYIDKKVARLDRYFDHIV-DAKVVLSVAGS-----PHVERRAKAEFQLN 61
Query: 165 --HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
G++R EE +YA+ID I++++L++ K RL R T
Sbjct: 62 VPGGIIRVEESDADMYAAIDRGVEILEKQLKRFK-------------GRLMNRRRATNAK 108
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
V S E ++ EIVR+K FEM P+T +A Q+E + HDF+ FRN ET EIN++
Sbjct: 109 AAVPPVPSSETEEEPAPEIVRVKRFEMKPMTPEDAAIQMEALGHDFFVFRNAETDEINVI 168
Query: 283 YKRKAGGYGVIIP 295
Y+R+ G YG+I P
Sbjct: 169 YRRRDGNYGLIEP 181
>gi|126697714|ref|YP_001086611.1| RNA-binding protein [Clostridium difficile 630]
gi|255099302|ref|ZP_05328279.1| putative RNA-binding protein [Clostridium difficile QCD-63q42]
gi|255305087|ref|ZP_05349259.1| putative RNA-binding protein [Clostridium difficile ATCC 43255]
gi|423088859|ref|ZP_17077229.1| ribosomal subunit interface protein [Clostridium difficile
70-100-2010]
gi|115249151|emb|CAJ66962.1| putative RNA-binding protein [Clostridium difficile 630]
gi|357558973|gb|EHJ40442.1| ribosomal subunit interface protein [Clostridium difficile
70-100-2010]
Length = 183
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II GK +ELTD +KN +E K+ K + + H +V V +S R ++ EV
Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSK-LDNYIHPDTDVKVTVSARKAR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T ++RAE+ E +Y +ID+V + ++L+K K++ D + K R +
Sbjct: 53 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSI-RFQ----- 106
Query: 219 TQVVENDADVQSEEEDDNFVDE-----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
DA++ +E +++ DE I R K F + P++ EA+ Q+E + HDFY F+N
Sbjct: 107 ------DAEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN 160
Query: 274 EETGEINIVYKRKAGGYGVI 293
++ EI +VYKR GGYG+I
Sbjct: 161 IDSDEIAVVYKRNNGGYGII 180
>gi|404483358|ref|ZP_11018581.1| ribosomal subunit interface protein [Clostridiales bacterium
OBRC5-5]
gi|404343631|gb|EJZ69992.1| ribosomal subunit interface protein [Clostridiales bacterium
OBRC5-5]
Length = 178
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 109/197 (55%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+TD +K VEEK+ K + K+ E + LSV+ + EV
Sbjct: 1 MRYTITGRNIEITDGLKKAVEEKLQK-LEKYFTAETEARITLSVQ-------KEAHKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ TK G++RAEE ++ +Y SID V II+++++K K K D + F+ +
Sbjct: 53 TIPTK-QGLIRAEEVSQDMYVSIDKVQDIIEKQIKKFKNKLIDKKQAAMSFSDFFI---- 107
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
ND E+ED+ +IV+ K F + P+ EA Q+E + HDFY FRN + E
Sbjct: 108 -----NDEAAYGEDEDEI---KIVKTKRFSIKPMDPEEACLQMELLGHDFYVFRNAISDE 159
Query: 279 INIVYKRKAGGYGVIIP 295
+ +VYKRK G YG+I P
Sbjct: 160 VCVVYKRKDGKYGIIEP 176
>gi|254973801|ref|ZP_05270273.1| putative RNA-binding protein [Clostridium difficile QCD-66c26]
gi|255091188|ref|ZP_05320666.1| putative RNA-binding protein [Clostridium difficile CIP 107932]
gi|255312845|ref|ZP_05354428.1| putative RNA-binding protein [Clostridium difficile QCD-76w55]
gi|255515604|ref|ZP_05383280.1| putative RNA-binding protein [Clostridium difficile QCD-97b34]
gi|260681920|ref|YP_003213205.1| RNA-binding protein [Clostridium difficile CD196]
gi|260685518|ref|YP_003216651.1| RNA-binding protein [Clostridium difficile R20291]
gi|306518818|ref|ZP_07405165.1| putative RNA-binding protein [Clostridium difficile QCD-32g58]
gi|384359472|ref|YP_006197324.1| RNA-binding protein [Clostridium difficile BI1]
gi|260208083|emb|CBA60322.1| putative RNA-binding protein [Clostridium difficile CD196]
gi|260211534|emb|CBE01707.1| putative RNA-binding protein [Clostridium difficile R20291]
Length = 183
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 111/195 (56%), Gaps = 15/195 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II GK +ELTD +KN +E K+ K + + H +V V +S R ++ EV
Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSK-LDNYIHPDTDVKVTVSARKAR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T ++RAE+ E +Y +ID+V + ++L+K K++ D + K +R
Sbjct: 53 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKS-----IRFQD 107
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+++ N AD Q + D+N I R K F + P++ EA+ Q+E + HDFY F+N ++ E
Sbjct: 108 SEI--NLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKNIDSDE 165
Query: 279 INIVYKRKAGGYGVI 293
I +VYKR GGYG+I
Sbjct: 166 IAVVYKRNNGGYGII 180
>gi|320530493|ref|ZP_08031551.1| ribosomal subunit interface protein [Selenomonas artemidis F0399]
gi|402302460|ref|ZP_10821572.1| ribosomal subunit interface protein [Selenomonas sp. FOBRC9]
gi|320137326|gb|EFW29250.1| ribosomal subunit interface protein [Selenomonas artemidis F0399]
gi|400380527|gb|EJP33344.1| ribosomal subunit interface protein [Selenomonas sp. FOBRC9]
Length = 181
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 109/191 (57%), Gaps = 20/191 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENVGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF + V
Sbjct: 58 VRGVLLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFK--------AEAV 108
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
E A EE+D + +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+V
Sbjct: 109 ETFAAPVPEEDD---IYPVVKRKSFALQPMDVQEAIMQMNLLNHHFFVFRNAETNEVNVV 165
Query: 283 YKRKAGGYGVI 293
Y R G Y +I
Sbjct: 166 YSRNDGKYALI 176
>gi|296452518|ref|ZP_06894215.1| ribosomal subunit interface protein [Clostridium difficile NAP08]
gi|296881070|ref|ZP_06905013.1| ribosomal subunit interface protein [Clostridium difficile NAP07]
gi|296258623|gb|EFH05521.1| ribosomal subunit interface protein [Clostridium difficile NAP08]
gi|296427936|gb|EFH13840.1| ribosomal subunit interface protein [Clostridium difficile NAP07]
Length = 189
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II GK +ELTD +KN +E K+ K + + H +V V +S R ++ EV
Sbjct: 7 MNIIISGKQIELTDAIKNKIESKLSK-LDNYIHPDTDVKVTVSARKAR-------QKIEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T ++RAE+ E +Y +ID+V + ++L+K K++ D + K R +
Sbjct: 59 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSI-RFQ----- 112
Query: 219 TQVVENDADVQSEEEDDNFVDE-----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
DA++ +E +++ DE I R K F + P++ EA+ Q+E + HDFY F+N
Sbjct: 113 ------DAEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN 166
Query: 274 EETGEINIVYKRKAGGYGVI 293
++ EI +VYKR GGYG+I
Sbjct: 167 IDSDEIAVVYKRNNGGYGII 186
>gi|408356026|ref|YP_006844557.1| ribosome-associated protein [Amphibacillus xylanus NBRC 15112]
gi|407726797|dbj|BAM46795.1| putative ribosome-associated protein [Amphibacillus xylanus NBRC
15112]
Length = 182
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 110/194 (56%), Gaps = 18/194 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAV-LKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+TD +K +VE+KVGK S +V V LSV E ++ EVT+
Sbjct: 5 IRGENVEVTDAIKAYVEKKVGKLERYFESSPTSDVKVNLSVYNEE-------QKIEVTI- 56
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ ++RAEE E +YA+IDLV ++R++RK K K + R KG + E T
Sbjct: 57 PMTNLLLRAEEKHEDLYAAIDLVVDKLERQIRKHKTKINRRTRQ-KGNAKYMFAELETNS 115
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
VE +EDD EIVR K F + P+ EAI Q++ + HDF+ F N +TG+ ++
Sbjct: 116 VE--------QEDDGDSIEIVRTKRFNLKPMDSEEAILQMDMLGHDFFVFTNADTGDTSV 167
Query: 282 VYKRKAGGYGVIIP 295
VY+R G YG+I P
Sbjct: 168 VYRRHDGKYGLIEP 181
>gi|255656424|ref|ZP_05401833.1| putative sigma 54 modulation protein [Clostridium difficile
QCD-23m63]
gi|296450129|ref|ZP_06891890.1| ribosomal subunit interface protein [Clostridium difficile NAP08]
gi|296878510|ref|ZP_06902515.1| ribosomal subunit interface protein [Clostridium difficile NAP07]
gi|296260892|gb|EFH07726.1| ribosomal subunit interface protein [Clostridium difficile NAP08]
gi|296430317|gb|EFH16159.1| ribosomal subunit interface protein [Clostridium difficile NAP07]
Length = 185
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 116/197 (58%), Gaps = 17/197 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++I+ G+ ++LTD +K +V+ K+ + +L E +V+++V K R ++ EV
Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRL---EKYLDPESEVKVTVSA----KKDR-QKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAE+ + +YA+ID+V + R++ K K K D ++ K +R
Sbjct: 53 TIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKS-----IRFEN 107
Query: 219 TQVVEN--DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
++N + D +EE +N V I R K F + P++ EAI Q+E V H+FY FRN++
Sbjct: 108 VDFIDNSSEFDDYDDEEYENIV--IERRKKFNVKPMSSEEAILQMELVGHNFYMFRNQDN 165
Query: 277 GEINIVYKRKAGGYGVI 293
EINIVYKRKAGGYG+I
Sbjct: 166 FEINIVYKRKAGGYGLI 182
>gi|423080611|ref|ZP_17069231.1| ribosomal subunit interface protein [Clostridium difficile
002-P50-2011]
gi|423085976|ref|ZP_17074409.1| ribosomal subunit interface protein [Clostridium difficile
050-P50-2011]
gi|357548000|gb|EHJ29873.1| ribosomal subunit interface protein [Clostridium difficile
050-P50-2011]
gi|357552984|gb|EHJ34747.1| ribosomal subunit interface protein [Clostridium difficile
002-P50-2011]
Length = 189
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II GK +ELTD +KN +E K+ K + + H +V V +S R ++ EV
Sbjct: 7 MNIIISGKQIELTDAIKNKIETKLSK-LDNYIHPDTDVKVTVSARKAR-------QKIEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T ++RAE+ E +Y +ID+V + ++L+K K++ D + K R +
Sbjct: 59 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSI-RFQ----- 112
Query: 219 TQVVENDADVQSEEEDDNFVDE-----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
DA++ +E +++ DE I R K F + P++ EA+ Q+E + HDFY F+N
Sbjct: 113 ------DAEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN 166
Query: 274 EETGEINIVYKRKAGGYGVI 293
++ EI +VYKR GGYG+I
Sbjct: 167 IDSDEIAVVYKRNNGGYGII 186
>gi|218132292|ref|ZP_03461096.1| hypothetical protein BACPEC_00150 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992807|gb|EEC58808.1| ribosomal subunit interface protein [[Bacteroides] pectinophilus
ATCC 43243]
Length = 179
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 113/201 (56%), Gaps = 23/201 (11%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+ ++ +I G+N+E+TD +K VEEK+GK + + EV V LSV ++
Sbjct: 1 MDIMRFVIVGRNIEVTDGLKEAVEEKLGK-LDRFFAPDTEVKVTLSVEKER-------QK 52
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ K ++R+E+ + +Y SIDLV +I+R+L+K K K D + F + +
Sbjct: 53 IEVTI-PVKGSIIRSEQVSNDMYVSIDLVEEVIERQLKKYKNKLIDKQQDAAAFAQEYID 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+ + V++DADV+ I+R K F++ P+ EA Q+E + H FY F N E
Sbjct: 112 K---EYVDDDADVK-----------IIRTKRFDVKPMDPEEACVQMELLGHSFYVFFNSE 157
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
T +IN+VYKRK YG+I P+
Sbjct: 158 TEQINVVYKRKGNTYGLIEPE 178
>gi|401565696|ref|ZP_10806518.1| ribosomal subunit interface protein [Selenomonas sp. FOBRC6]
gi|400185548|gb|EJO19776.1| ribosomal subunit interface protein [Selenomonas sp. FOBRC6]
Length = 181
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 108/191 (56%), Gaps = 20/191 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENVGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF V V V
Sbjct: 58 VRGVLLRGEERSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFKAEAVETFVQPV- 115
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
EEDD F +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+V
Sbjct: 116 --------PEEDDVF--PVVKTKRFALQPMDVQEAIMQMNLLNHHFFVFRNAETEEVNVV 165
Query: 283 YKRKAGGYGVI 293
Y R G Y +I
Sbjct: 166 YSRNDGKYALI 176
>gi|139439952|ref|ZP_01773289.1| Hypothetical protein COLAER_02327 [Collinsella aerofaciens ATCC
25986]
gi|133774718|gb|EBA38538.1| ribosomal subunit interface protein [Collinsella aerofaciens ATCC
25986]
Length = 194
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 105/194 (54%), Gaps = 10/194 (5%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ +TD ++ HV+EK+G+A+ VDV L P I EVT
Sbjct: 5 VSGRKTTVTDALRAHVDEKIGEALKVFDIEPMTVDVVLRYEKNPSNPNPAI--VEVTA-R 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+R E +YA+IDL + + R+LRK K K D+ G + V PV +V
Sbjct: 62 ARGSVIRVAEHGADMYAAIDLSADKVTRQLRKFKTKVVDN--RQGGASAADV-APVERV- 117
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
E+ AD+ EEDD+ +VR K ++ P+T +A+ Q + + HDFY F N TG IN+V
Sbjct: 118 EDLADLLLPEEDDDL---LVREKVIDVTPMTEEQALVQTDLLGHDFYVFENATTGLINVV 174
Query: 283 YKRKAGGYGVIIPK 296
Y RK GGYG+I P+
Sbjct: 175 YHRKNGGYGIIKPR 188
>gi|188586831|ref|YP_001918376.1| sigma 54 modulation protein, SSU ribosomal protein S30P
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351518|gb|ACB85788.1| sigma 54 modulation protein, SSU ribosomal protein S30P
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 178
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 108/199 (54%), Gaps = 23/199 (11%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
S+KL I GKN+++T+ +K H++ + K + KH E V LSV E
Sbjct: 2 SLKLTISGKNIDVTNALKEHIQRRFAK-LDKHFDDTVEAQVTLSVIKDN-------HNVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+F +VR E+ +YAS+D V ++R+++K K K NR K+R+
Sbjct: 54 ATMFLNGGMLVRGEQSTGDMYASVDQVIDKVERQIKKHKTK----------INR-KLRQS 102
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+++ A+ E +D EIV+ K F + P+T EA+ Q+E + HDF+ FRN ET
Sbjct: 103 GGSLLKEGAESTEEGKDP----EIVKTKRFAIKPMTPEEAVLQMELIGHDFFVFRNAETE 158
Query: 278 EINIVYKRKAGGYGVIIPK 296
E+N+VY+RK G YG I P+
Sbjct: 159 EVNVVYRRKDGNYGQIEPE 177
>gi|357059073|ref|ZP_09119918.1| hypothetical protein HMPREF9334_01635 [Selenomonas infelix ATCC
43532]
gi|355372981|gb|EHG20319.1| hypothetical protein HMPREF9334_01635 [Selenomonas infelix ATCC
43532]
Length = 181
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 108/191 (56%), Gaps = 20/191 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENVGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF V V V
Sbjct: 58 VRGVLLRGEERSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFKAEAVETFVQPV- 115
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
EEDD F +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+V
Sbjct: 116 --------PEEDDVF--PVVKTKRFALQPMDVQEAIMQMNLLNHHFFVFRNAETEEVNVV 165
Query: 283 YKRKAGGYGVI 293
Y R G Y +I
Sbjct: 166 YGRNDGKYALI 176
>gi|355575226|ref|ZP_09044793.1| hypothetical protein HMPREF1008_00770 [Olsenella sp. oral taxon 809
str. F0356]
gi|354817870|gb|EHF02365.1| hypothetical protein HMPREF1008_00770 [Olsenella sp. oral taxon 809
str. F0356]
Length = 195
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 111/198 (56%), Gaps = 12/198 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
V + I G+ + ++D +++HV +KVG+++ DV L V P R CE+
Sbjct: 2 VDIKISGRKVSVSDGMRDHVLDKVGESLKVFDIQPMSCDVVLRVDKNP--SNPDRRTCEI 59
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F + + VVR E + +YA+ID + + R+LRK K + D K ++ +RE V
Sbjct: 60 TVFVRDN-VVRVEASNQDMYAAIDDAADKVTRQLRKYKTRVIDR----KQRSQQTIREGV 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ + D ++ EE DD ++VR K+ ++ P+T EA+ Q + + HDFY F N TG
Sbjct: 115 P-LGDLDDLIEGEELDD----QLVREKYVDLTPMTEEEALVQTDLLGHDFYVFENATTGL 169
Query: 279 INIVYKRKAGGYGVIIPK 296
+N++Y R GGYG+I PK
Sbjct: 170 VNVIYHRHNGGYGIIKPK 187
>gi|402311610|ref|ZP_10830549.1| ribosomal subunit interface protein [Lachnospiraceae bacterium
ICM7]
gi|400371602|gb|EJP24558.1| ribosomal subunit interface protein [Lachnospiraceae bacterium
ICM7]
Length = 178
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+TD +K VEEK+ K + K+ E + LSV+ + EV
Sbjct: 1 MRYTITGRNIEITDGLKKAVEEKLQK-LEKYFTAETEARITLSVQ-------KEAHKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ TK G++RAEE ++ +Y SID V II+++++K K K D + F
Sbjct: 53 TIPTK-QGLIRAEEVSQDMYVSIDKVQDIIEKQIKKFKNKLIDKKQAAMSF--------- 102
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T ND ++ED+ +IV+ K F + P+ EA Q+E + HDFY FRN + E
Sbjct: 103 TDFFINDEAAYGDDEDEI---KIVKTKRFSIKPMDPEEACLQMELLGHDFYVFRNAISDE 159
Query: 279 INIVYKRKAGGYGVIIP 295
+ +VYKRK G YG+I P
Sbjct: 160 VCVVYKRKDGKYGIIEP 176
>gi|427406422|ref|ZP_18896627.1| ribosomal subunit interface protein [Selenomonas sp. F0473]
gi|425708241|gb|EKU71281.1| ribosomal subunit interface protein [Selenomonas sp. F0473]
Length = 181
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 109/191 (57%), Gaps = 20/191 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENVGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF + V
Sbjct: 58 VRGVLLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFK--------AEAV 108
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
E A EE+D + +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+V
Sbjct: 109 ETFAAPVPEEDD---IYPVVKRKSFMLHPMDVQEAIMQMNLLNHHFFLFRNAETNEVNVV 165
Query: 283 YKRKAGGYGVI 293
Y R G Y +I
Sbjct: 166 YGRNDGKYALI 176
>gi|435854881|ref|YP_007316200.1| ribosomal subunit interface protein [Halobacteroides halobius DSM
5150]
gi|433671292|gb|AGB42107.1| ribosomal subunit interface protein [Halobacteroides halobius DSM
5150]
Length = 181
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 116/198 (58%), Gaps = 20/198 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K +++GKN+E+TD ++N+VEEKVGK E++ ++S+ + K I EV
Sbjct: 1 MKFMLRGKNIEITDALRNYVEEKVGKVENYFDDEETEIEAQISL---DVEKEGHI--VEV 55
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVREP 217
T+F ++RAE+ +YASID V ++R++RK K + + + + F +
Sbjct: 56 TVFVDGL-ILRAEKKTGDMYASIDGVIEKLERQIRKYKTRVQRKIKKEQENFRK------ 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V+E+ EE++D+ IVR K F + P+ V EA+ Q++ +DHDF+ F N ET
Sbjct: 109 --NVIES-----REEDNDDDDPNIVRTKRFAVKPMDVKEAVMQMDLLDHDFFVFSNAETK 161
Query: 278 EINIVYKRKAGGYGVIIP 295
E+N+VYKRK G YG+I P
Sbjct: 162 EVNVVYKRKNGDYGLIEP 179
>gi|334126607|ref|ZP_08500556.1| ribosomal subunit interface protein [Centipeda periodontii DSM
2778]
gi|333391278|gb|EGK62396.1| ribosomal subunit interface protein [Centipeda periodontii DSM
2778]
Length = 181
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 110/191 (57%), Gaps = 20/191 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V ++ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENVGDISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF E V V
Sbjct: 58 VRGVLLRGEERSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFKA----EAVETFV 112
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ + EEDD F +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+V
Sbjct: 113 Q-----PTPEEDDVF--PVVKTKRFALQPMDVQEAIMQMNLLNHRFFVFRNAETEEVNVV 165
Query: 283 YKRKAGGYGVI 293
Y R G Y +I
Sbjct: 166 YSRNDGKYALI 176
>gi|258512514|ref|YP_003185948.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257479240|gb|ACV59559.1| sigma 54 modulation protein/ribosomal protein S30EA
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 180
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 115/199 (57%), Gaps = 21/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K + G N+ +T ++++V++K+ + + RE D ++ V G R+ E+
Sbjct: 1 MKAQVHGDNIAVTAALQDYVDKKIARLT---RYFDREADKQIYVTMAVEGLDHRV---EM 54
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+F +GV+ RAEE + +YASIDL + ++ ++ + KEK + R + R P
Sbjct: 55 TVFV--NGVIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLN---------RRFRARGP 103
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
Q+ D D +E +D+ ++VR+K F + P+ V EA+ Q+E + HDF+ F N ET
Sbjct: 104 RPQLKAADRDAVAETDDEI---KVVRVKRFPIKPMDVEEAVLQMELLGHDFFVFMNAETE 160
Query: 278 EINIVYKRKAGGYGVIIPK 296
E+N+VY+R++G YG+I P+
Sbjct: 161 EVNVVYRRRSGDYGLIEPQ 179
>gi|429736735|ref|ZP_19270622.1| ribosomal subunit interface protein [Selenomonas sp. oral taxon 138
str. F0429]
gi|429154290|gb|EKX97027.1| ribosomal subunit interface protein [Selenomonas sp. oral taxon 138
str. F0429]
Length = 205
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 108/191 (56%), Gaps = 20/191 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ + ++ V LSV G + + EVT
Sbjct: 30 IRGKNVEVTPALRDYVEKRVGK-ITKYFENIGDISVLLSVEG-------KHHKVEVTAPI 81
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF V V V
Sbjct: 82 VRGVLLRGEERSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFKAEAVETFVQPV- 139
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
EEDD F +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+V
Sbjct: 140 --------PEEDDIF--PVVKTKRFTLQPMDVQEAIMQMNLLNHHFFVFRNAETEEVNVV 189
Query: 283 YKRKAGGYGVI 293
Y R G Y +I
Sbjct: 190 YSRNDGKYALI 200
>gi|227872848|ref|ZP_03991159.1| ribosome-associated inhibitor A [Oribacterium sinus F0268]
gi|227841318|gb|EEJ51637.1| ribosome-associated inhibitor A [Oribacterium sinus F0268]
Length = 176
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 111/198 (56%), Gaps = 23/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I G+NL LTD +KN VE+K+GK + K +V LS + +++ EV
Sbjct: 1 MKITITGRNLSLTDGLKNGVEKKLGK-LDKFFQAETPCNVTLSTQKD-------MQKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE +Y SIDLV +++R++RK K K + F+
Sbjct: 53 TIPVK-GSVIRAEEATPDMYQSIDLVVDVLERQIRKYKNKLIQRHQAASDFS-------- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
++ +E + Q EEE +IVR K ++ P+T EA Q+E + H F+ F++ TG+
Sbjct: 104 SEFIE-EKPAQDEEEI-----KIVRTKHIDLKPMTAEEACLQMELLGHSFFVFQDGNTGK 157
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRKA YG+I P+
Sbjct: 158 VNVVYKRKANSYGLIEPE 175
>gi|226356700|ref|YP_002786440.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
deserti VCD115]
gi|226318690|gb|ACO46686.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Deinococcus deserti VCD115]
Length = 188
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 114/194 (58%), Gaps = 14/194 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+E++D ++++V+EK+ + + +++ + + V L+VR + R R EV L
Sbjct: 6 LSGRNVEVSDAMRDYVQEKLTR-LDRYNDQITDARVTLTVR--DVRDAGRRNRVEVQL-N 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+G++RAEE +YA+ID S +++R+LRK K R+MK + V +P
Sbjct: 62 VPNGIIRAEEHHSDMYAAIDKASDVLERQLRKFKT------RYMKQRHE-TVPQPGPGPA 114
Query: 223 ENDADVQSEEED-DNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
E ADV + +D F+ EIVR K F+M P++ +A+ Q+E + HDFY F N + +
Sbjct: 115 E--ADVNAGLDDVSEFMPEIVRQKRFDMRPMSPEDAVTQMEALGHDFYVFMNMGSNACGV 172
Query: 282 VYKRKAGGYGVIIP 295
VY+R+ G YG+I P
Sbjct: 173 VYRRRDGHYGLIEP 186
>gi|108804458|ref|YP_644395.1| sigma 54 modulation protein/30S ribosomal protein S30P [Rubrobacter
xylanophilus DSM 9941]
gi|108765701|gb|ABG04583.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Rubrobacter xylanophilus DSM 9941]
Length = 189
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 115/204 (56%), Gaps = 24/204 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
++++++G+N+ +TD+++ + EKV + V +V L + P I
Sbjct: 1 MEIVVKGRNIPVTDSLERYAVEKVERVRKFFDDDRSVARAEVELI-----HERNPSIAAS 55
Query: 157 EV---TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNR 211
EV TLF V++A E +E +YASID +S ++R++++ + ++ D HGR +K
Sbjct: 56 EVAETTLFING-AVLKAREASEDMYASIDRMSDKLERQVKRYRGRQVDRWHGR-LKNHEG 113
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
+ EP V E + D++ IVR K F+M P++ EA+ Q+E +DHDF+ F
Sbjct: 114 ARA-EPQPFVAEEEEDIEPR---------IVRTKQFQMKPMSAEEAVLQMELLDHDFFVF 163
Query: 272 RNEETGEINIVYKRKAGGYGVIIP 295
N +TG+IN+VY+R+ G YG+I P
Sbjct: 164 TNADTGDINVVYRRRDGNYGLIEP 187
>gi|346310917|ref|ZP_08852929.1| hypothetical protein HMPREF9452_00798 [Collinsella tanakaei YIT
12063]
gi|345897165|gb|EGX67096.1| hypothetical protein HMPREF9452_00798 [Collinsella tanakaei YIT
12063]
Length = 195
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 103/194 (53%), Gaps = 9/194 (4%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ +TD ++ HV+EK+G+A VDV L P I V
Sbjct: 5 VSGRKTTVTDALRAHVDEKIGEACKVFDIEPMTVDVVLRYEKNPSNPNPAIVEATVR--- 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+R E +YA+IDL + + R+LRK K K D+ +G + +V PV +V
Sbjct: 62 ARGSVIRVAEHGADMYAAIDLAADKVTRQLRKFKTKVVDN--RQQGLSAAEV-APVPRVT 118
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ + E+E+D ++VR K+ E+ P+T +A+ Q++ + HDFY F + TG N+V
Sbjct: 119 DLADLLIPEDEEDG---QLVREKYIELTPMTEEQALVQIDLLGHDFYVFEDAVTGLTNVV 175
Query: 283 YKRKAGGYGVIIPK 296
Y RK GGYG+I PK
Sbjct: 176 YHRKNGGYGIIKPK 189
>gi|238916329|ref|YP_002929846.1| sigma-54 modulation protein [Eubacterium eligens ATCC 27750]
gi|238871689|gb|ACR71399.1| putative sigma-54 modulation protein [Eubacterium eligens ATCC
27750]
Length = 175
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 113/198 (57%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ II G+N+++T+ +K+ VEEK+GK + + EV+V LSV ++ EV
Sbjct: 1 MRFIITGRNIDITEGLKSAVEEKLGK-LDRFFAPETEVNVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV +I+R+L+K K K D ++ F +
Sbjct: 53 TIPVKGN-IIRSEQVSSDMYVSIDLVEEVIERQLKKYKNKIVDKQQNAAAFAQ------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ VE D D DD +I+R K F + P+ EA Q+E + H+FY F N ET E
Sbjct: 105 -EFVEKDYD------DDEV--KIIRTKRFGIKPMDPEEACVQMELLGHNFYVFFNSETEE 155
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 156 VNVVYKRKGNTYGLIEPE 173
>gi|303232830|ref|ZP_07319514.1| ribosomal subunit interface protein [Atopobium vaginae PB189-T1-4]
gi|302481020|gb|EFL44096.1| ribosomal subunit interface protein [Atopobium vaginae PB189-T1-4]
Length = 191
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 13/194 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+ + ++D ++ V+ K+G A+ DV L V ++ P + CEVT++
Sbjct: 6 ISGRKVSVSDALRERVQAKIGDALTVFDISPMTCDVVLRV--DKYHSNPERKTCEVTVYV 63
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ + VVR E ++ +YA+ID ++ + R+LRK K + D + + V
Sbjct: 64 RDN-VVRVEASSDDMYAAIDDAAAKVTRQLRKYKTRIIDKKQRSQA-------PLVAAQT 115
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
N D+ +DD +VR K+ ++ P+T EA+ Q + + HDFY F N TG IN+V
Sbjct: 116 SNLGDLIENRDDDEL---LVREKYVDLRPMTEEEALVQTDLIGHDFYVFENATTGLINVV 172
Query: 283 YKRKAGGYGVIIPK 296
Y R GGYG+I PK
Sbjct: 173 YHRHNGGYGIIKPK 186
>gi|218291023|ref|ZP_03495064.1| sigma 54 modulation protein/ribosomal protein S30EA
[Alicyclobacillus acidocaldarius LAA1]
gi|218239041|gb|EED06246.1| sigma 54 modulation protein/ribosomal protein S30EA
[Alicyclobacillus acidocaldarius LAA1]
Length = 180
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 114/199 (57%), Gaps = 21/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K + G N+ +T ++ +V++K+ + + RE D ++ V G R+ E+
Sbjct: 1 MKAQVHGDNIAVTAALQEYVDKKIARLT---RYFDREADKQIYVTMAVEGLDHRV---EM 54
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+F +GV+ RAEE + +YASIDL + ++ ++ + KEK + R + R P
Sbjct: 55 TVFV--NGVIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLN---------RRFRARGP 103
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
Q+ D D +E +D+ ++VR+K F + P+ V EA+ Q+E + HDF+ F N ET
Sbjct: 104 RPQLKAADRDAVAETDDEI---KVVRVKRFPIKPMDVEEAVLQMELLGHDFFVFMNAETE 160
Query: 278 EINIVYKRKAGGYGVIIPK 296
E+N+VY+R++G YG+I P+
Sbjct: 161 EVNVVYRRRSGDYGLIEPQ 179
>gi|410584260|ref|ZP_11321365.1| ribosome-associated protein Y (PSrp-1) [Thermaerobacter
subterraneus DSM 13965]
gi|410505122|gb|EKP94632.1| ribosome-associated protein Y (PSrp-1) [Thermaerobacter
subterraneus DSM 13965]
Length = 187
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 112/200 (56%), Gaps = 16/200 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CE 157
+ + I GKN+++T+ +K + KVGK + + V LS+ R R E
Sbjct: 1 MNIAIYGKNIDVTEALKEYARRKVGKVARYFNGEPLQAQVTLSIE--------RDRHIVE 52
Query: 158 VTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
VT+ +G+ +RAEE+++ +YASID+V ++R++RK K + + R ++ V E
Sbjct: 53 VTIPVPTNGLLIRAEEESDDMYASIDMVVDKLERQIRKFKTRLNRKARRLEATTGQVVTE 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ V+ A + EEE +VR K F + P+TV EAI Q+ + HDF+ F N T
Sbjct: 113 -LDTAVDEPAWPEGEEEG-----RVVRTKRFAVKPMTVDEAILQMNLLGHDFFVFANATT 166
Query: 277 GEINIVYKRKAGGYGVIIPK 296
G++N++Y+R+ G YG+I P+
Sbjct: 167 GQVNVLYRRRDGQYGLIEPE 186
>gi|407795335|ref|ZP_11142294.1| putative ribosomal subunit interface protein [Salimicrobium sp.
MJ3]
gi|407020220|gb|EKE32933.1| putative ribosomal subunit interface protein [Salimicrobium sp.
MJ3]
Length = 183
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 108/199 (54%), Gaps = 31/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--------EVDVRLSVRGGEFGKGPRIR 154
I+G+NLE+TD+++++VE+KV K L R EV V LSV E +
Sbjct: 6 IRGENLEVTDSIRDYVEKKVTK-------LERYFDTPPSSEVHVNLSVYNKE-------Q 51
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
EVT+ K+ ++RAEE +YA++DLV ++R++RK K K + R
Sbjct: 52 TIEVTV-PMKNLLLRAEEHNADLYAAVDLVVDKLERQIRKHKTKVNRKARQEGA------ 104
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
P E + D QS E+D+ +IVR K F++ P+ EA Q++ + H FY F N
Sbjct: 105 --PKHVFAEMERDAQSRLEEDDEEVKIVRTKRFDLKPMASEEAALQMDMLGHSFYVFTNA 162
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET E NIVYKR+ G YG+I
Sbjct: 163 ETDETNIVYKRRDGRYGLI 181
>gi|336429452|ref|ZP_08609418.1| hypothetical protein HMPREF0994_05424 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336002763|gb|EGN32865.1| hypothetical protein HMPREF0994_05424 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 178
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 114/201 (56%), Gaps = 24/201 (11%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+ S+K II GKN+E+T +++ VE K+GK + K+ EV V LSV ++
Sbjct: 1 MISMKFIISGKNIEITQGLRSAVESKIGK-LEKYFTQETEVLVTLSVEKDR-------QK 52
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ K ++R+E+ + +Y SIDLV +I+R+L+K K K D +H G N +
Sbjct: 53 IEVTI-PVKGSIIRSEQTSNDMYVSIDLVEEVIERQLKKYKNKIMD--KHQSGGNFQQA- 108
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+E D EEE+ +IVR K F++ P+ +A Q+E + H+F+ F N E
Sbjct: 109 -----FIEKDY---PEEEEV----QIVRTKKFDIKPMYPEDACIQMELLGHNFFVFFNAE 156
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
T ++N+VYKRK YG+I P+
Sbjct: 157 TDQVNVVYKRKGNTYGLIEPE 177
>gi|320334243|ref|YP_004170954.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
maricopensis DSM 21211]
gi|319755532|gb|ADV67289.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
maricopensis DSM 21211]
Length = 206
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 103/193 (53%), Gaps = 16/193 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+E+TD ++++VE K+ + + + + V + V L+VR + R R EV L
Sbjct: 28 LTGRNVEVTDALRDYVETKLTR-LDRFNGQVTDARVTLTVR--DVRDASRRNRVEVQL-N 83
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+G++RAEE +YA+ID +++R+LRK K K H R
Sbjct: 84 VPNGIIRAEEHHADMYAAIDKAGDVLERQLRKFKTKIMRH------------RHDAQPDD 131
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
S ++ F EIVR K F++ P+T +A+ Q+E + HDFY FRN +T +V
Sbjct: 132 AAPPAPASGDDVSEFTPEIVRQKRFDLRPMTAEDAVTQMEALGHDFYVFRNMDTEGCAVV 191
Query: 283 YKRKAGGYGVIIP 295
Y+R+ G YG+I P
Sbjct: 192 YRRRDGNYGLIEP 204
>gi|339443824|ref|YP_004709828.1| hypothetical protein EGYY_01850 [Eggerthella sp. YY7918]
gi|338903576|dbj|BAK43427.1| hypothetical protein EGYY_01850 [Eggerthella sp. YY7918]
Length = 192
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 108/194 (55%), Gaps = 10/194 (5%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+ + G+ + +TD ++ + EEK+G ++ + +D + + + PR CEVTL
Sbjct: 3 ITVTGRKMPVTDALRQYAEEKIGNSMKVMD--INPLDAEVVLLVEKNPANPRPAVCEVTL 60
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFN-RLKVREPVT 219
TK H ++R EE E +YA+ID+ ++ + R+LRK K K D +G R+ EP
Sbjct: 61 HTKGH-IIRVEESEEDMYAAIDVAAAKVVRQLRKYKTKVIDRKLRAEGETIRIDTTEPA- 118
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
+ DV ++ DE++R+K E PLT EA+ +++ + HDF+ + + +T +
Sbjct: 119 -----NLDVDGLMKELEAEDEVLRVKEIEFEPLTEEEALVKIDLLGHDFFAYTDRDTSLV 173
Query: 280 NIVYKRKAGGYGVI 293
N++Y+R GGYG++
Sbjct: 174 NVLYRRDDGGYGLL 187
>gi|153854571|ref|ZP_01995841.1| hypothetical protein DORLON_01836 [Dorea longicatena DSM 13814]
gi|149752880|gb|EDM62811.1| ribosomal subunit interface protein [Dorea longicatena DSM 13814]
Length = 178
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+++T ++ VE K+GK + ++ E+ V LSV+ G ++ EV
Sbjct: 1 MKFIIIGKNIDVTPGLREAVESKLGK-LGRYFTPNTEIHVTLSVQKGH-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K G+VR+E+++ +Y SIDLV +I+R+LRK K K R +G N +
Sbjct: 53 TI-PVKGGLVRSEQESSDMYVSIDLVEEVIERQLRKYKNKLV--AREQEGGNFKQEFFDA 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+E+D +++ IVR K F P+ +A Q+E + HDFY F N E+ E
Sbjct: 110 EDNIEDDGEIK-----------IVRTKKFGFKPMYPEDACVQMELLGHDFYVFCNAESDE 158
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VY+RK G +G+I P+
Sbjct: 159 VNVVYRRKNGTFGLIEPE 176
>gi|428176303|gb|EKX45188.1| hypothetical protein GUITHDRAFT_108830 [Guillardia theta CCMP2712]
Length = 204
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 113/210 (53%), Gaps = 24/210 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR--- 155
+ + I G N+ELT +K ++ EK+ + K LV D L+V K P +
Sbjct: 7 IPITISGNNVELTPALKQYINEKLTNTLSKVGRLVTRCDAHLTV-----DKNPSVENNAN 61
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK----GFNR 211
EV + + K V+RA + +YASID V+ ++RKLRK KE+ D R K GF+
Sbjct: 62 FEVVV-SVKGTVMRASKSTHDMYASIDAVADSVKRKLRKYKERIIDAHRQGKPEAMGFDE 120
Query: 212 LKVR--EPVTQVV---ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDH 266
+++ + TQ V EN V + +++ K F M P++V +A+ L+ ++H
Sbjct: 121 EEIQGFKDFTQEVAKMENSLPVPPADM------SLMKKKTFPMEPISVEDAVLCLDYIEH 174
Query: 267 DFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
DFY F+N+E G+I +VYKR GG G+I P+
Sbjct: 175 DFYVFKNKENGKIAVVYKRNHGGVGLIEPQ 204
>gi|167761274|ref|ZP_02433401.1| hypothetical protein CLOSCI_03679 [Clostridium scindens ATCC 35704]
gi|336422832|ref|ZP_08602973.1| hypothetical protein HMPREF0993_02350 [Lachnospiraceae bacterium
5_1_57FAA]
gi|167660940|gb|EDS05070.1| ribosomal subunit interface protein [Clostridium scindens ATCC
35704]
gi|336007173|gb|EGN37199.1| hypothetical protein HMPREF0993_02350 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 179
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 111/198 (56%), Gaps = 21/198 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+++T +K VE K+GK + ++ E+ V LSV+ ++ EV
Sbjct: 1 MKFIIIGKNIDVTPGLKEAVENKLGK-LERYFTPDTEIHVTLSVQRER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K G++R+E+++ +Y SIDLV +I+R+LRK K K RH +G K
Sbjct: 53 TI-PVKGGIIRSEQESSDMYVSIDLVEEVIERQLRKYKNKLI--ARHQEGSGNFK----- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ D EDD + +IVR K F P+ +A Q+E + HDF+ F N ET E
Sbjct: 105 ----QEFFDSGERSEDDGEI-KIVRTKKFGFKPMYPEDACVQMELLGHDFFVFCNAETDE 159
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VY+RK G +G+I P+
Sbjct: 160 VNVVYRRKNGTFGLIEPE 177
>gi|226324344|ref|ZP_03799862.1| hypothetical protein COPCOM_02125 [Coprococcus comes ATCC 27758]
gi|225206792|gb|EEG89146.1| ribosomal subunit interface protein [Coprococcus comes ATCC 27758]
Length = 189
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 30/205 (14%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--VRLSVRGGEFGKGPRI 153
LS + II G+N+++T ++ VE+K+GK + E D V LSV
Sbjct: 9 LSCMNFIISGRNIDITPGLRQAVEQKLGKL---EKYFTPETDIIVTLSVEKER------- 58
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNR 211
++ EVT+ K + ++R+E+++ +Y SIDLV II+R+LRK K K G H F +
Sbjct: 59 QKIEVTIPVKGN-IIRSEQESSDMYVSIDLVEEIIERQLRKYKTKLIAKQQGGH--DFRQ 115
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
+ +E+D S E D EIVR K F + P+ +A Q+E + H+FY F
Sbjct: 116 --------EFIESDT---SAAESDEI--EIVRTKRFGIKPMFPEDACIQMELLGHNFYVF 162
Query: 272 RNEETGEINIVYKRKAGGYGVIIPK 296
N ET E+N+VYKRK G YG+I P+
Sbjct: 163 SNAETDEVNVVYKRKNGTYGLIEPE 187
>gi|291522078|emb|CBK80371.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Coprococcus
catus GD/7]
Length = 175
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ II G+N+ +T+ +K + +K+GK + K+ E+ V LSV ++ EV
Sbjct: 1 MRYIISGRNITVTEGLKEAIYDKLGK-LEKYFTPETEIIVTLSVEKQR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H +RAE+ ++ +Y SIDLV II R+LRK K + ++ K F +P
Sbjct: 53 TVPVKGH-TIRAEQSSDNMYVSIDLVEEIIVRQLRKYKTRIANQQNSRKNF------QPA 105
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+E D D + + IVR K F + PL EA ++E + H F+ FRN +T E
Sbjct: 106 YLEMETDGDEEVK---------IVRTKKFAIKPLDPEEACVEMELLGHSFFVFRNAQTNE 156
Query: 279 INIVYKRKAGGYGVIIPKG 297
+N+VYKRK YG+I P+
Sbjct: 157 VNVVYKRKGNTYGLIEPEN 175
>gi|442805806|ref|YP_007373955.1| ribosomal subunit interface protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
gi|442741656|gb|AGC69345.1| ribosomal subunit interface protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
Length = 175
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 112/199 (56%), Gaps = 28/199 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+ GKN+E+TD ++ +K+ K + K E ++ V K I CEV
Sbjct: 1 MKYIVNGKNIEVTDALRERAIKKLSK-IEKFFKSDAECNIMFKVE-----KNRHI--CEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F+K +RAEE +YASID+V ++R++RK N+ K+ + +
Sbjct: 53 TIFSK-DLFIRAEETTNDMYASIDMVIDKLERQIRK---------------NKTKLGKRI 96
Query: 219 TQ--VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
Q V+ + D++ + E++N+ ++V+ K F + P+ V EAI Q+ + H+F+ F N ET
Sbjct: 97 RQESVIPENFDIKEDIEEENY--KVVKSKRFAIKPMDVEEAILQMNLLGHNFFVFTNAET 154
Query: 277 GEINIVYKRKAGGYGVIIP 295
E+N+VYKRK G YG+I P
Sbjct: 155 EEVNVVYKRKDGNYGLIEP 173
>gi|260438127|ref|ZP_05791943.1| ribosomal subunit interface protein [Butyrivibrio crossotus DSM
2876]
gi|292809451|gb|EFF68656.1| ribosomal subunit interface protein [Butyrivibrio crossotus DSM
2876]
Length = 176
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+E+T +++ VEEK+GK + K+ + +V LSV ++ EV
Sbjct: 1 MKFIIMGKNIEVTAGLRSAVEEKIGK-LDKYFNDEVTANVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++RAEE + +Y SIDLV II+R++R+ K + + + F++ + +
Sbjct: 53 TIPIKGN-IIRAEEVSNDMYVSIDLVEEIIERQMRRYKTRLVNAKQAAAEFSKTYIEDDY 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
E++ DV+ IVR K F + P+ EA Q+E + H+FY F N ET E
Sbjct: 112 ----EDEPDVK-----------IVRTKKFGVKPMNPEEACVQMELLQHNFYVFLNSETDE 156
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 157 VNVVYKRKNNTYGLIEPE 174
>gi|403746668|ref|ZP_10955061.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Alicyclobacillus hesperidum URH17-3-68]
gi|403120527|gb|EJY54899.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Alicyclobacillus hesperidum URH17-3-68]
Length = 181
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 113/203 (55%), Gaps = 26/203 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAV-LKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K+ + G N+ +T ++ +V++K+G+ +++ V ++V G R E
Sbjct: 1 MKIQVHGDNISVTSALQEYVDKKIGRLTRYFEGEADKQIHVTMAVEGT-------YHRVE 53
Query: 158 VTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
+T+ HGV+ RAEE ++ +YASIDLV+ ++ ++ + KEK + R + R
Sbjct: 54 MTVHV--HGVIFRAEEKSQDMYASIDLVTDKLEEQVHRYKEKLN---------RRFRARG 102
Query: 217 PVTQVVEND--ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
TQ+ + D EED +VR+K F + P+ V EAI Q++ + HDF+ F N
Sbjct: 103 LRTQIRQRGFAQDALDAEEDLR----VVRVKRFPIKPMDVEEAIMQMDLLGHDFFVFTNA 158
Query: 275 ETGEINIVYKRKAGGYGVIIPKG 297
ET E+N+VY+RK G YG+I P+G
Sbjct: 159 ETEEVNVVYRRKRGDYGLIEPQG 181
>gi|56554777|gb|AAV97959.1| chloroplast-specific ribosome-associated protein [Volvox carteri f.
nagariensis]
Length = 232
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK-GPRIRR 155
S+V++IIQG+ L +T+ +K +VEEKV KA+ +H ++EVDV LS RGG+ G G + ++
Sbjct: 72 STVRIIIQGRKLPVTNAIKEYVEEKVAKAIQNFAHTLKEVDVTLSARGGDTGTHGKKEQK 131
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR 204
+VT+FT ++GVVR E+ +YA+IDLV I+ KL ++KEK G+
Sbjct: 132 VDVTIFTLRNGVVRVEDRESNLYAAIDLVCDKIRSKLTRVKEKAITKGK 180
>gi|386715366|ref|YP_006181689.1| putative ribosomal subunit interface protein [Halobacillus
halophilus DSM 2266]
gi|384074922|emb|CCG46415.1| putative ribosomal subunit interface protein [Halobacillus
halophilus DSM 2266]
Length = 187
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 31/205 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--------EVDVRLSVRGGEFGKG 150
++ I+G+NLE+TD++K++VE+KVGK L R EV V LSV E
Sbjct: 2 LQYTIRGENLEVTDSIKDYVEKKVGK-------LERYFDNPPSSEVHVNLSVYNDE---- 50
Query: 151 PRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFN 210
+ EVT+ K+ ++RAEE +YA+IDLV ++R++RK K K + + F
Sbjct: 51 ---QTIEVTI-PMKNLLLRAEEHNTDLYAAIDLVVDKLERQIRKHKTKVN------RKFR 100
Query: 211 RLKVREPVTQVVENDADVQS--EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
+ + V +E +A + EEE +F +IV+ K F++ P+ EA Q++ + H+F
Sbjct: 101 QEGAPKHVFAELEREAQQEQLKEEESSDFDIQIVKTKRFDLKPMDSEEAALQMDMLGHNF 160
Query: 269 YGFRNEETGEINIVYKRKAGGYGVI 293
Y F N T E NIVYKR+ G YG+I
Sbjct: 161 YVFTNANTDETNIVYKRRDGRYGLI 185
>gi|260587043|ref|ZP_05852956.1| ribosomal subunit interface protein [Blautia hansenii DSM 20583]
gi|331082815|ref|ZP_08331937.1| hypothetical protein HMPREF0992_00861 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542533|gb|EEX23102.1| ribosomal subunit interface protein [Blautia hansenii DSM 20583]
gi|330400144|gb|EGG79793.1| hypothetical protein HMPREF0992_00861 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 176
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 113/197 (57%), Gaps = 24/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+E+T +++ VE+K+GK + K+ E+ V LSV ++ EV
Sbjct: 1 MKFIISGKNIEVTQGLRSAVEDKLGK-LEKYFTSDTEIIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV II+R+LRK K K D + GF +P
Sbjct: 53 TIPVKGN-IIRSEQVSSDMYVSIDLVEEIIERQLRKYKNKIIDK-KQSAGF------QP- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ VE D EED N + +I+R K F P+ +A Q+E + H+F+ F N ET E
Sbjct: 104 -EFVEKDY-----EEDTNEI-KIIRTKKFGFKPMYPEDACVQMELLGHNFFVFLNAETEE 156
Query: 279 INIVYKRKAGGYGVIIP 295
+N+VYKRK YG+I P
Sbjct: 157 VNVVYKRKGNTYGLIEP 173
>gi|197302426|ref|ZP_03167481.1| hypothetical protein RUMLAC_01154 [Ruminococcus lactaris ATCC
29176]
gi|197298324|gb|EDY32869.1| ribosomal subunit interface protein [Ruminococcus lactaris ATCC
29176]
Length = 186
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 115/201 (57%), Gaps = 20/201 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+E+T +K+ +E+K+GK + ++ E++V LSV G ++ EV
Sbjct: 1 MNFIISGKNIEVTPGLKDAIEQKLGK-LERYFTPETEINVTLSVEKGR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRL--KVR 215
T+ K + ++R+E+ ++ +Y SIDLV +I+R+LRK K K + H + R
Sbjct: 53 TIPVKGN-IIRSEQTSDNMYVSIDLVEEVIERQLRKYKNKLVARSQGHPTSYTSTGNSFR 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+ + E+DA EDD +IVR K F + P+ +A Q+E + H F+ F N E
Sbjct: 112 KEFFET-EDDA-----AEDDEI--QIVRTKKFGIKPMFPEDACIQMELLGHSFFVFSNAE 163
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
T E+N+VYKRK G +G+I P+
Sbjct: 164 TDEVNVVYKRKDGSFGLIEPE 184
>gi|357011496|ref|ZP_09076495.1| YvyD [Paenibacillus elgii B69]
Length = 183
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 20/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T+ +K+HVE+K+G+ + EV+V LSV G ++ E
Sbjct: 1 MKFNIRGENIEVTEALKDHVEKKLGRLERYFEAPPTSEVNVTLSVVKG-------MQTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL-KVRE 216
VT+ ++RAEE +YA+ DLV ++R++RK K K + R G L ++
Sbjct: 54 VTI-PLTGLMLRAEEKHADMYAAADLVVDKLERQIRKAKTKANRKIRLEGGIKDLFRMEL 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
P DA ++EDD E+VR K F + P+ V EAI Q+ V H+F+ F N +T
Sbjct: 113 P-------DASYSLDDEDDY---ELVRTKRFTLKPMDVEEAILQMNMVGHNFFVFSNSDT 162
Query: 277 GEINIVYKRKAGGYGVIIP 295
++N+VYKR G YG+I P
Sbjct: 163 EQVNVVYKRNDGKYGLIEP 181
>gi|336436547|ref|ZP_08616259.1| hypothetical protein HMPREF0988_01844 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336007412|gb|EGN37437.1| hypothetical protein HMPREF0988_01844 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 185
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 114/207 (55%), Gaps = 29/207 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+E+T +K+ VE+K+GK + ++ E+ V LSV ++ EV
Sbjct: 1 MKFIISGKNIEVTPGLKSTVEQKLGK-LERYFTPETEIIVTLSVEKDR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR--- 215
T+ K + ++R+E+ + +Y SIDLV +I+R+LRK K N+L R
Sbjct: 53 TIPVKGN-IIRSEQTSSDMYVSIDLVEEVIERQLRKYK-------------NKLVARSQG 98
Query: 216 EPVTQVVENDADVQSEEEDDNFVDE----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
P ++ + EEDD V++ IVR K F + P+ +A Q+E + H F+ F
Sbjct: 99 HPTASSSGSNFKKEFFEEDDTSVEDNEIRIVRTKRFGIKPMFPEDACIQMELLGHSFFVF 158
Query: 272 RNEETGEINIVYKRKAGGYGVIIPKGN 298
N ET E+N+VYKRK G +G+I P+ N
Sbjct: 159 SNAETDEVNVVYKRKDGSFGLIEPEFN 185
>gi|332708325|ref|ZP_08428305.1| ribosomal subunit interface protein, partial [Moorea producens 3L]
gi|332352929|gb|EGJ32489.1| ribosomal subunit interface protein [Moorea producens 3L]
Length = 144
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 21/159 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+++TD ++++V +K+ KAV ++ +VD+ LSV + PRI +
Sbjct: 1 MKLVIQGKNIDITDAIRDYVHQKIEKAVNHFQNITNQVDINLSV-----ARNPRINPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ K V+RA+E E +YASIDLV+ I R+LRK KEK + K N+ K
Sbjct: 56 AEVTIYANK-TVIRAQEGTENLYASIDLVADKIHRQLRKYKEK----LQSQKTRNQAK-- 108
Query: 216 EPVTQVVENDADVQSEEEDD---NFVDEIVRMKFFEMPP 251
TQV+ + V + D +E+VRMK+F MPP
Sbjct: 109 ---TQVILEEESVPVDLISDRTPELPEEVVRMKYFAMPP 144
>gi|210620511|ref|ZP_03292087.1| hypothetical protein CLOHIR_00030 [Clostridium hiranonis DSM 13275]
gi|210155321|gb|EEA86327.1| hypothetical protein CLOHIR_00030 [Clostridium hiranonis DSM 13275]
Length = 194
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 112/196 (57%), Gaps = 16/196 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I GK +ELT +K+++E K+ K ++ + DV+++V KG + EV
Sbjct: 9 MKLTISGKQMELTQGIKDNIESKLSKL---DKYISPDTDVKVTVSAK---KGRH--KIEV 60
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E +Y +IDLV ++ +L+K K+K RH + ++ P
Sbjct: 61 TIAPKNGHVIRAEESQENLYPAIDLVVDKLKIQLKKYKDKM--QKRHQEN-KSIRFDSPE 117
Query: 219 TQVVENDADVQSEEEDDNFVDEIV-RMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
ND+ ++ + ED I+ R K + P++ EA+ Q+E V HDFY FRN+ET
Sbjct: 118 I----NDSILEEDLEDFEDELFIIKRRKRINIKPMSEEEAVLQMELVGHDFYIFRNDETD 173
Query: 278 EINIVYKRKAGGYGVI 293
EI +VYKRK GGYG+I
Sbjct: 174 EIALVYKRKNGGYGII 189
>gi|405982778|ref|ZP_11041089.1| ribosomal subunit interface protein [Slackia piriformis YIT 12062]
gi|404389487|gb|EJZ84563.1| ribosomal subunit interface protein [Slackia piriformis YIT 12062]
Length = 188
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 108/195 (55%), Gaps = 12/195 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ + +TD + ++ EK+G A+ S V + +V L V P I CEVT+
Sbjct: 5 VIGRKVTVTDALNDYAIEKIGNAMKVMSLDVADTEVVLRVEKTR--AIPCI--CEVTIRL 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K H + EE E +YA+ID+ S+ + R+LRK K + DH + LK P+
Sbjct: 61 KGH-TIHVEEHEEDMYAAIDVASAKVLRQLRKYKTRVIDH----RMRETLKETAPIEATG 115
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
N ++ +E D DE+VR+K + P+T EA+ Q++ + HDF+ + + +T E+N++
Sbjct: 116 ANFDELMAELSAD---DEVVRVKEMDFEPMTEEEALIQIDLLGHDFFVYTDRDTNEVNVM 172
Query: 283 YKRKAGGYGVIIPKG 297
Y+R GGYG++ PK
Sbjct: 173 YRRTGGGYGLLKPKA 187
>gi|126700060|ref|YP_001088957.1| ribosome-associated sigma 54 modulation protein [Clostridium
difficile 630]
gi|254976037|ref|ZP_05272509.1| putative sigma 54 modulation protein [Clostridium difficile
QCD-66c26]
gi|255093425|ref|ZP_05322903.1| putative sigma 54 modulation protein [Clostridium difficile CIP
107932]
gi|255101603|ref|ZP_05330580.1| putative sigma 54 modulation protein [Clostridium difficile
QCD-63q42]
gi|255315170|ref|ZP_05356753.1| putative sigma 54 modulation protein [Clostridium difficile
QCD-76w55]
gi|255517839|ref|ZP_05385515.1| putative sigma 54 modulation protein [Clostridium difficile
QCD-97b34]
gi|255650955|ref|ZP_05397857.1| putative sigma 54 modulation protein [Clostridium difficile
QCD-37x79]
gi|260684024|ref|YP_003215309.1| sigma 54 modulation protein [Clostridium difficile CD196]
gi|260687684|ref|YP_003218818.1| sigma 54 modulation protein [Clostridium difficile R20291]
gi|384361667|ref|YP_006199519.1| sigma 54 modulation protein [Clostridium difficile BI1]
gi|423084185|ref|ZP_17072690.1| ribosomal subunit interface protein [Clostridium difficile
002-P50-2011]
gi|423086758|ref|ZP_17075149.1| ribosomal subunit interface protein [Clostridium difficile
050-P50-2011]
gi|423092472|ref|ZP_17080276.1| ribosomal subunit interface protein [Clostridium difficile
70-100-2010]
gi|115251497|emb|CAJ69330.1| putative ribosome-associated sigma 54 modulation protein
[Clostridium difficile 630]
gi|260210187|emb|CBA64388.1| putative sigma 54 modulation protein [Clostridium difficile CD196]
gi|260213701|emb|CBE05578.1| putative sigma 54 modulation protein [Clostridium difficile R20291]
gi|357543232|gb|EHJ25265.1| ribosomal subunit interface protein [Clostridium difficile
002-P50-2011]
gi|357545867|gb|EHJ27830.1| ribosomal subunit interface protein [Clostridium difficile
050-P50-2011]
gi|357553974|gb|EHJ35710.1| ribosomal subunit interface protein [Clostridium difficile
70-100-2010]
Length = 187
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 115/197 (58%), Gaps = 15/197 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++I+ G+ ++LTD +K +V+ K+ + +L E +V+++V K R ++ EV
Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRL---EKYLDPESEVKVTVSA----KKDR-QKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAE+ + +YA+ID+V + R++ K K K D ++ K +R
Sbjct: 53 TIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKS-----IRFEN 107
Query: 219 TQVVENDADVQSEEEDDNFVDEIV--RMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
++N ++ + DD + IV R K F + P++ EAI Q+E V H+FY FRN++
Sbjct: 108 LDFIDNSSEFDDYDYDDEEDENIVIERRKKFNVKPMSSEEAILQMELVGHNFYMFRNQDN 167
Query: 277 GEINIVYKRKAGGYGVI 293
EINIVYKRKAGGYG+I
Sbjct: 168 FEINIVYKRKAGGYGLI 184
>gi|381211563|ref|ZP_09918634.1| hypothetical protein LGrbi_16669 [Lentibacillus sp. Grbi]
Length = 185
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 118/198 (59%), Gaps = 16/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-AVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T ++++VE+K+GK A + +V+V LSV E +R E
Sbjct: 1 MKYNIRGENIEVTGAIRDYVEKKIGKLARYFDTPPSSDVNVNLSVYNDE-------QRIE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + ++RAEE +YA+IDLV ++R++RK K K + + F + +
Sbjct: 54 VTI-PMPNLLLRAEEQHIDLYAAIDLVVGKLERQIRKYKTKVN------RKFRQEGSPKH 106
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ +E +A +++E+E+ + V EIVR K F++ P+ EA+ Q++ + H FY F N +G
Sbjct: 107 IFAELEKEAQMENEKEESDDV-EIVRKKQFDLKPMDSEEAVLQMDMLGHAFYVFTNAVSG 165
Query: 278 EINIVYKRKAGGYGVIIP 295
N+VY+RK G YG+I P
Sbjct: 166 NTNVVYRRKDGKYGLIEP 183
>gi|373107680|ref|ZP_09521973.1| ribosomal subunit interface protein [Stomatobaculum longum]
gi|371650638|gb|EHO16091.1| ribosomal subunit interface protein [Stomatobaculum longum]
Length = 176
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 111/198 (56%), Gaps = 23/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I G+N++L D +KN V +K+GK + K+ E V LS R K I EV
Sbjct: 1 MRITISGRNVDLGDRLKNQVNKKLGK-LEKYFAPDTEARVVLSRR-----KDAEI--IEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T+ +G +RAEE + +ASIDL I+R+++K K K +D + F+ L + E
Sbjct: 53 TIPTR-NGFIRAEEATDDFFASIDLAEETIERQIKKYKTKLTDKKQSALAFSDLFLDETE 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
E +AD++ IV+ K FE+ P+T EA Q+E + H F+ F N ++G
Sbjct: 112 D---ETEADLR-----------IVKNKKFELHPMTPEEACLQMELLGHAFFVFLNGDSGN 157
Query: 279 INIVYKRKAGGYGVIIPK 296
+ +VYKR+ G YG+I P+
Sbjct: 158 VEVVYKRRDGSYGLIEPR 175
>gi|309790306|ref|ZP_07684873.1| sigma 54 modulation protein/ribosomal protein S30EA [Oscillochloris
trichoides DG-6]
gi|308227640|gb|EFO81301.1| sigma 54 modulation protein/ribosomal protein S30EA [Oscillochloris
trichoides DG6]
Length = 194
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 113/199 (56%), Gaps = 14/199 (7%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD----VRLSVRGGEFGKGPRIRRC 156
L ++ +N ++T+ + H+EEK+GK L R +D + +R + + + R
Sbjct: 3 LTVKSRNGKITERQRQHIEEKLGK-------LGRYMDQITSATVEIRTEQQRQAGEVHRV 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
+VTL + ++RAEE A +Y +ID V S++QR++++ KEK R + ++L V +
Sbjct: 56 QVTLTGDRGVILRAEEQASDLYGAIDEVQSVLQRQIQRYKEKYWRRERQRRQPDKLAVVD 115
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
VE V+ E D E++R K + P+ V +AIEQ+E + H F+ F++ ET
Sbjct: 116 MPAVAVEEPPPVEETERRDM---EVIRTKKLTLRPMFVDDAIEQMELLGHSFFVFQDAET 172
Query: 277 GEINIVYKRKAGGYGVIIP 295
+++++Y+R+ G YG+++P
Sbjct: 173 EQVSVLYRRRDGNYGMLVP 191
>gi|295106613|emb|CBL04156.1| SSU ribosomal protein S30P/sigma 54 modulation protein
[Gordonibacter pamelaeae 7-10-1-b]
Length = 182
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 105/186 (56%), Gaps = 14/186 (7%)
Query: 110 LTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGV 167
+TD ++ + EEK+G + V+ LV EV + + PR CEVTL TK H +
Sbjct: 3 VTDALRQYAEEKIGNSMKVMDIDPLVAEVVLYVEKNPA----NPRPACCEVTLRTKGH-I 57
Query: 168 VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDAD 227
+R EE E +YA+ID+ ++ + R+LRK K K D R ++ + EPV D D
Sbjct: 58 IRVEECEEDMYAAIDVAAAKVVRQLRKYKTKVID--RKLRAVDETIRTEPVPT---KDLD 112
Query: 228 VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKA 287
EE + +E+VR+K E PLT EA+ +++ + HDF+ + + +T +N++Y+R
Sbjct: 113 QLMEELAAD--EEVVRVKEIEFEPLTEEEALVKIDLLGHDFFAYTDRDTSMVNVLYRRDD 170
Query: 288 GGYGVI 293
GGYG++
Sbjct: 171 GGYGLL 176
>gi|302390145|ref|YP_003825966.1| 30S ribosomal protein S30P; sigma 54 modulation protein
[Thermosediminibacter oceani DSM 16646]
gi|302200773|gb|ADL08343.1| SSU ribosomal protein S30P; sigma 54 modulation protein
[Thermosediminibacter oceani DSM 16646]
Length = 180
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 112/201 (55%), Gaps = 26/201 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR---EVDVRLSVRGGEFGKGPRIRR 155
+K+ + GKN E+T ++ + E+K+GK +HL E V L V K I
Sbjct: 1 MKVTVSGKNFEVTPALREYAEKKIGKLGRHFNHLNNDNLEAQVTLHVE-----KDRHI-- 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ ++R EE+ + +Y+SIDLV + R++ K K K + R K N+
Sbjct: 54 VEVTIPVND-IILRGEEETQDMYSSIDLVVDKLNRQIEKYKTKLTKALR--KNSNK---- 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
NDA V+SE ++N IV++K F + P++V EA+ Q++ + HDF+ F N E
Sbjct: 107 --------NDAVVESEIPEEN-EPRIVKVKRFAVKPMSVDEAVLQMDLLGHDFFVFVNAE 157
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
T EIN+VYKRK G YG+I+P+
Sbjct: 158 TDEINVVYKRKDGDYGLIVPE 178
>gi|238925288|ref|YP_002938805.1| ribosome-associated protein Y (PSrp-1) [Eubacterium rectale ATCC
33656]
gi|238876964|gb|ACR76671.1| ribosome-associated protein Y (PSrp-1) [Eubacterium rectale ATCC
33656]
gi|291524418|emb|CBK90005.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Eubacterium
rectale DSM 17629]
gi|291527564|emb|CBK93150.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Eubacterium
rectale M104/1]
Length = 175
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I GKN+ELT+ +K VEEK+ K + K +V V LSV ++ EV
Sbjct: 1 MRITISGKNIELTEGLKQAVEEKLSK-LEKFFKPDTDVYVTLSVEKDR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H V+R+E+ + +Y SIDLV +I+R+LRK + K + ++
Sbjct: 53 TIPAKGH-VIRSEQVSNDMYVSIDLVEEVIERQLRKYRTK-------------ISAKKYA 98
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ ++D V++++ +D + +IVR K F M P+ +A Q+E HDF+ FRN E E
Sbjct: 99 PAIFQDDF-VEADDAEDEEI-KIVRTKRFGMKPMYPEDACIQMELSGHDFFVFRNAENDE 156
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 157 VNVVYKRKGHTYGLIEPE 174
>gi|317130281|ref|YP_004096563.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Bacillus
cellulosilyticus DSM 2522]
gi|315475229|gb|ADU31832.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
cellulosilyticus DSM 2522]
Length = 187
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 118/202 (58%), Gaps = 26/202 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+NLE+T ++++VE+KVGK S L +V+V++SV ++ E+T+
Sbjct: 5 IRGENLEITPALRDYVEKKVGKLDKYFESPLKSDVNVKMSVLNNN-------QKVEITIP 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK------ESDHGRHMKGFNRLKVR 215
K ++RAEE +YA+IDLV ++R++RK K K + D ++M N L
Sbjct: 58 MVKL-LLRAEEKHSDMYAAIDLVIEKLERQIRKHKTKVNKKFRQDDSLKYMFK-NEL--- 112
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EP+ + V+ V E+ED+ EIVR K F++ P+ EA+ Q++ + H+F+ F N
Sbjct: 113 EPLQEEVK----VAVEDEDEF---EIVRTKRFDLKPMDAEEAVLQMDMLGHNFFVFSNAI 165
Query: 276 TGEINIVYKRKAGGYGVIIPKG 297
+G N+VYKRK G YG+I P+
Sbjct: 166 SGSTNVVYKRKDGRYGLIEPEA 187
>gi|260886464|ref|ZP_05897727.1| ribosomal subunit interface protein [Selenomonas sputigena ATCC
35185]
gi|330839685|ref|YP_004414265.1| sigma 54 modulation protein/ribosomal protein S30EA [Selenomonas
sputigena ATCC 35185]
gi|402835192|ref|ZP_10883771.1| ribosomal subunit interface protein [Selenomonas sp. CM52]
gi|260863803|gb|EEX78303.1| ribosomal subunit interface protein [Selenomonas sputigena ATCC
35185]
gi|329747449|gb|AEC00806.1| sigma 54 modulation protein/ribosomal protein S30EA [Selenomonas
sputigena ATCC 35185]
gi|402275983|gb|EJU25113.1| ribosomal subunit interface protein [Selenomonas sp. CM52]
Length = 181
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 112/196 (57%), Gaps = 20/196 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T ++K++VE++VGK + K+ V E+ V L+V KG I EVT+
Sbjct: 6 VRGKNIEITPSLKDYVEKRVGK-ITKYFDEVGEISVLLTV-----SKGRHI--VEVTVPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
++R EE +Y SIDLV ++R++RK K + + R GF + V
Sbjct: 58 PGGVLLRGEEATMDMYTSIDLVVEKLERQIRKQKTRLAKRFRG-GGFKE--------EAV 108
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ + +EE+ F +V+ K F + P+ V EAI Q+ ++H+F+ FRN E+ EIN+V
Sbjct: 109 QQMGAIPVQEEEGEF--PLVKTKRFVVKPMDVQEAIMQMNLLNHNFFVFRNAESEEINVV 166
Query: 283 YKRKAGGYGVIIPKGN 298
Y+R G Y +I P GN
Sbjct: 167 YRRTDGKYALIEP-GN 181
>gi|238927665|ref|ZP_04659425.1| ribosome-associated inhibitor A [Selenomonas flueggei ATCC 43531]
gi|304438240|ref|ZP_07398182.1| ribosomal subunit interface protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|238884381|gb|EEQ48019.1| ribosome-associated inhibitor A [Selenomonas flueggei ATCC 43531]
gi|304368847|gb|EFM22530.1| ribosomal subunit interface protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 181
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 109/191 (57%), Gaps = 20/191 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFDNVGEIAVLLSVEG-------KHHKVEVTAPV 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K + R GF + V
Sbjct: 58 ARGILLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLARRFRQ-GGFK--------AEAV 108
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
E A EE++ + +V+ K F + P+ V EAI Q+ ++H F+ FRN E+ E+NIV
Sbjct: 109 ETFAQPIPEEDE---LYPVVKTKRFTLQPMDVQEAIMQMNLLNHHFFVFRNAESEEVNIV 165
Query: 283 YKRKAGGYGVI 293
Y R G Y +I
Sbjct: 166 YGRHDGKYALI 176
>gi|328943666|ref|ZP_08241131.1| ribosomal subunit interface protein [Atopobium vaginae DSM 15829]
gi|327491635|gb|EGF23409.1| ribosomal subunit interface protein [Atopobium vaginae DSM 15829]
Length = 192
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 104/194 (53%), Gaps = 14/194 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+ + ++D +++HV+ KVG A+ DV L V P + CEVT++
Sbjct: 6 ISGRKVSVSDALRDHVQHKVGDALKVFDITPMSCDVVLRVDKNH--SNPDRKTCEVTVYV 63
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ VVR E +E +YA+ID S + R+LRK K + D + + + P
Sbjct: 64 RN-NVVRVEASSEDMYAAIDAASDKVTRQLRKYKTRIID--------RKQRSQAPAPAPS 114
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
++ +D+ E DD D +VR K+ ++ P+T EA+ Q + + HDFY F N TG IN+V
Sbjct: 115 KDLSDLIDEVADD---DMLVREKYIDLHPMTEEEALVQTDLIGHDFYVFENATTGLINVV 171
Query: 283 YKRKAGGYGVIIPK 296
Y R GGYG+I PK
Sbjct: 172 YHRHNGGYGIIKPK 185
>gi|389817468|ref|ZP_10208155.1| hypothetical protein A1A1_08904 [Planococcus antarcticus DSM 14505]
gi|388464592|gb|EIM06922.1| hypothetical protein A1A1_08904 [Planococcus antarcticus DSM 14505]
Length = 188
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 103/191 (53%), Gaps = 12/191 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ H+E+KV K + + V + + EVT+
Sbjct: 5 IRGENIEVTPAIREHIEKKVEKI---ERYFTDGANATAMVNLKSYNHNQT--KVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE + +YA+IDL+ S ++R++RK K K + R G
Sbjct: 59 MKNLTLRAEERHDDMYAAIDLIVSKLERQIRKYKTKVNRKFRERDGMG------LAFATA 112
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
END VQ+E E+D+ IVR K F++ P+ EA+ Q+ + H+F+ F + E+ E NIV
Sbjct: 113 ENDTRVQNEAEEDDEDFTIVRTKQFDLKPMDEEEAVLQMNMLGHNFFVFTDAESNETNIV 172
Query: 283 YKRKAGGYGVI 293
YKRK G YG+I
Sbjct: 173 YKRKDGSYGLI 183
>gi|229087666|ref|ZP_04219792.1| Ribosome-associated factor Y [Bacillus cereus Rock3-44]
gi|228695627|gb|EEL48486.1| Ribosome-associated factor Y [Bacillus cereus Rock3-44]
Length = 180
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 115/201 (57%), Gaps = 30/201 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSEK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETHSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 217 --PVTQVV--ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
P T + E+ A ++ +EDD E+VR K F++ P+ V EAI Q++ + H+F+ F
Sbjct: 100 GSPKTTFILTESAATLEEVKEDDL---ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFT 156
Query: 273 NEETGEINIVYKRKAGGYGVI 293
N +T E N+VY RK G YG+I
Sbjct: 157 NADTNETNVVYGRKDGKYGLI 177
>gi|291547280|emb|CBL20388.1| SSU ribosomal protein S30P/sigma 54 modulation protein
[Ruminococcus sp. SR1/5]
Length = 175
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 110/198 (55%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+ +T+ +K VE+K+GK + ++ E+ V LSV ++ EV
Sbjct: 1 MKFIISGKNIAVTEGLKTAVEDKLGK-LERYFTPETEISVTLSVEKDR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV +I+R+LRK K K D + F + +
Sbjct: 53 TIPVKGN-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKIVDKQQESTNFQKAYL---- 107
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
D D + +EE +I+R K F + P+ +A Q+E + H+F+ F N ET +
Sbjct: 108 ------DKDYEEDEEV-----KIIRTKKFGIKPMYPEDACVQMELLGHNFFVFFNAETEQ 156
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 157 VNVVYKRKGNTYGLIEPE 174
>gi|331090519|ref|ZP_08339372.1| hypothetical protein HMPREF9477_00015 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405862|gb|EGG85390.1| hypothetical protein HMPREF9477_00015 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 178
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 113/200 (56%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+E+T +K +E K+GK + ++ E+ V LSV ++ EV
Sbjct: 1 MKFIISGKNIEVTPGLKETIEHKLGK-LERYFTPDTEIIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ KK ++R+E+ + +Y SIDLV +I+R+LRK K K RH G N
Sbjct: 53 TIPVKK-DIIRSEQVSSDMYVSIDLVEEVIERQLRKYKNKLV--ARHQAGGNF------- 102
Query: 219 TQVVENDADVQSEEE--DDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
N A +SE++ D N + +IVR K F + P+ +A Q++ + H+F+ F N ET
Sbjct: 103 -----NQAFFESEDDTADTNEI-KIVRTKRFGIKPMFPEDACMQMDLLGHNFFVFSNAET 156
Query: 277 GEINIVYKRKAGGYGVIIPK 296
++N+VYKRK G +G+I P+
Sbjct: 157 EQVNVVYKRKDGSFGLIEPE 176
>gi|431795283|ref|YP_007222188.1| ribosome-associated protein [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430785509|gb|AGA70792.1| ribosome-associated protein Y (PSrp-1) [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 176
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 114/197 (57%), Gaps = 29/197 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GK +E+TD +K +V ++VGK + K+S +V V L V G R EVT
Sbjct: 5 VRGKQMEVTDALKEYVLKRVGK-LEKYSDEFMDVKVTLLVEEGR-------HRVEVT--A 54
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
HG++ R EE++ +YASID+V ++R++ K + + + R T+V
Sbjct: 55 PIHGIILRGEEESTDMYASIDMVVEKLERQIDKYRTRINKRMR--------------TKV 100
Query: 222 VENDADVQ-SEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+++ +Q + EDD+ +E+VR K F P++V EAI Q+ V H+FY F N +T IN
Sbjct: 101 LKDHETLQPANLEDDS--EEVVRYKRFGTKPMSVEEAIMQMNLVGHNFYAFTNMDTHAIN 158
Query: 281 IVYKRKAGG-YGVIIPK 296
+VY+RK+GG YG++ P+
Sbjct: 159 VVYRRKSGGDYGLLEPE 175
>gi|325662446|ref|ZP_08151052.1| hypothetical protein HMPREF0490_01792 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331086236|ref|ZP_08335318.1| hypothetical protein HMPREF0987_01621 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325471280|gb|EGC74504.1| hypothetical protein HMPREF0490_01792 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330406395|gb|EGG85909.1| hypothetical protein HMPREF0987_01621 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 178
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 111/198 (56%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+++T +K+ +E+K+GK + ++ E+ V LSV ++ EV
Sbjct: 1 MNFIISGKNIDVTPGLKSCIEQKLGK-LERYFTPETEIIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H ++R+E+ + +Y SIDLV +I+R+LRK K K R+ +G N
Sbjct: 53 TIPVKGH-IIRSEQSSNDMYVSIDLVEEVIERQLRKYKNKLV--ARNQEGSN-------F 102
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
Q D SE DD +I+R K F + P+ +A Q++ + HDFY F N ET E
Sbjct: 103 KQEFFESEDTSSE--DDEI--KIIRTKRFGIKPMFPEDACIQMDLLGHDFYVFFNAETEE 158
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK G +G+I P+
Sbjct: 159 VNVVYKRKNGTFGLIEPE 176
>gi|255307472|ref|ZP_05351643.1| putative sigma 54 modulation protein [Clostridium difficile ATCC
43255]
Length = 185
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 115/195 (58%), Gaps = 13/195 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++I+ G+ ++LTD +K +V+ K+ + +L E +V+++V K R ++ EV
Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRL---EKYLDPESEVKVTVSA----KKDR-QKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAE+ + +YA+ID+V + R++ K K K D ++ K +R
Sbjct: 53 TIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKS-----IRFEN 107
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
++N ++ +++++ I R K F + P++ EAI Q+E V H+FY FRN++ E
Sbjct: 108 LDFIDNSSEFDDYDDEEDENIVIERRKKFNVKPMSSEEAILQMELVGHNFYMFRNQDNFE 167
Query: 279 INIVYKRKAGGYGVI 293
INIVYKRKAGGYG+I
Sbjct: 168 INIVYKRKAGGYGLI 182
>gi|346722807|ref|YP_001180117.2| sigma 54 modulation protein/ribosomal protein S30EA
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|345106778|gb|ABP66926.2| sigma 54 modulation protein/ribosomal protein S30EA
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 181
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 114/200 (57%), Gaps = 22/200 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CE 157
+ II GKN+E+TD +K+ +E+K+ K + ++ + +V V LSV +IR E
Sbjct: 1 MNFIISGKNIEVTDALKDRIEKKLSK-LERYVKMNCDVHVTLSVE--------KIRHIVE 51
Query: 158 VTLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
VT+ +G ++RAEE + +Y++IDLV ++R++RK K K + + + + E
Sbjct: 52 VTI--PFYGMILRAEEASNDMYSAIDLVVDSLERQIRKFKTKIAKRAKDAESLRYMTFEE 109
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
Q ++EE+ F +I + K F + P++V EAI Q+ + H F+ F N++T
Sbjct: 110 EAQQET-------NQEENGEF--KIAKTKRFPIKPMSVDEAILQMNLLGHSFFVFLNQDT 160
Query: 277 GEINIVYKRKAGGYGVIIPK 296
++N+VYKR G YG+I P+
Sbjct: 161 DKVNVVYKRNDGAYGLIEPE 180
>gi|15806102|ref|NP_294806.1| light-repressed protein A [Deinococcus radiodurans R1]
gi|32699733|sp|Q9RVE7.1|Y1082_DEIRA RecName: Full=Uncharacterized protein DR_1082
gi|6458813|gb|AAF10654.1|AE001958_8 light-repressed protein A, putative [Deinococcus radiodurans R1]
Length = 191
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+E+T+ ++ +VEEK+ + + +++ + + V L+VR + R R EV L
Sbjct: 6 LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQLNV 62
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR-EPVTQV 221
G++RAEE +YA+ID S +++R+LRK K R+MK R + R EP+
Sbjct: 63 PG-GIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMK--QRQEGRPEPLPGP 113
Query: 222 VENDADVQS--EEEDD--NFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
E + + Q DD F EIVR K FE+ P++ +A+ Q+E + HDFY F++ + G
Sbjct: 114 AEAEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-G 172
Query: 278 EINIVYKRKAGGYGVI 293
+ +VY+R+ G YG+I
Sbjct: 173 QTGVVYRRRDGHYGLI 188
>gi|339007031|ref|ZP_08639606.1| hypothetical protein BRLA_c07810 [Brevibacillus laterosporus LMG
15441]
gi|421874834|ref|ZP_16306434.1| lmo2511 protein [Brevibacillus laterosporus GI-9]
gi|338776240|gb|EGP35768.1| hypothetical protein BRLA_c07810 [Brevibacillus laterosporus LMG
15441]
gi|372456178|emb|CCF15983.1| lmo2511 protein [Brevibacillus laterosporus GI-9]
Length = 183
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 19/196 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+++T+ ++ +VE+K+ + +L EV V + V GE G EVT+
Sbjct: 5 IRGENIQVTEALREYVEKKISRLERYFDNLGHVEVHVTMRVLRGE---GT----IEVTI- 56
Query: 162 TKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
GV+ RAEE + +YA+IDLV ++R++RK K K + RH G + E +
Sbjct: 57 -PMTGVILRAEETHDDMYAAIDLVVEKLERQMRKYKTKINRKQRHESGAKAMPNMEASSV 115
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
V ++EEDD D IVR K F + P+ EAI Q+E + H+F+ F N E+ ++N
Sbjct: 116 AV-------ADEEDDVQFD-IVRTKRFNLKPMDSEEAIMQMELLGHNFFVFENSESNDVN 167
Query: 281 IVYKRKAGGYGVIIPK 296
+VY+R G YG+I PK
Sbjct: 168 VVYRRNDGRYGLIEPK 183
>gi|410696850|gb|AFV75918.1| ribosomal subunit interface protein [Thermus oshimai JL-2]
Length = 186
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 114/204 (55%), Gaps = 23/204 (11%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIR 154
++ KLI G+NLE+TD ++ +VE+K+ + ++ L+ +V + L+ P +
Sbjct: 1 MNVYKLI--GRNLEITDAIREYVEKKLARLDRYQNGELMAKVVLSLA-------NSPHVE 51
Query: 155 R---CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R EV + G+VR EE+ + +YA+ID + ++ +L++ KE+ RH
Sbjct: 52 RKAKAEVQV-DLPGGLVRVEEEDQDLYAAIDRMVDRLETQLKRFKERRYVGKRH------ 104
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
+ P + V + ++ EE++ IVR+K FEM P+ EA Q+E + HDF+ F
Sbjct: 105 -SYQGPPPEEVRALSALRKPEEEEG--PRIVRVKRFEMKPMDPEEAAFQMEALGHDFFVF 161
Query: 272 RNEETGEINIVYKRKAGGYGVIIP 295
RN ET EIN++Y+RK G YG+I P
Sbjct: 162 RNRETEEINVIYRRKDGNYGLIEP 185
>gi|70727138|ref|YP_254054.1| hypothetical protein SH2139 [Staphylococcus haemolyticus JCSC1435]
gi|123659610|sp|Q4L4H7.1|Y2139_STAHJ RecName: Full=Uncharacterized protein SH2139
gi|68447864|dbj|BAE05448.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 192
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 16/199 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++E+K+GK + ++ + V + V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGK-LERYFNDVPNAVAHVKVKTYQNSTT----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDLV+S ++R++RK K K HG ++
Sbjct: 57 TI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTHGEPEAFVAEVQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
P EN DV +E +D+ + EI+R K F + P+ EA+ Q+E + HDFY F +
Sbjct: 116 APP-----ENVDDVNAEPTNDSEI-EIIRSKQFSLKPMDSEEAVLQMELLGHDFYIFTDR 169
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVYKRK G YG+I
Sbjct: 170 ETDGTSIVYKRKDGKYGLI 188
>gi|218295112|ref|ZP_03495948.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermus
aquaticus Y51MC23]
gi|218244315|gb|EED10840.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermus
aquaticus Y51MC23]
Length = 186
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 118/204 (57%), Gaps = 23/204 (11%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++ KLI G+NLE+TD ++++VE+K+ + + ++ + V LS+ G P + +
Sbjct: 1 MNVYKLI--GRNLEITDAIRDYVEKKLSR-LDRYQNGELMAKVVLSLAGS-----PHVEK 52
Query: 156 ---CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNR 211
EV L G++R EE+ + +YA+ID + ++ +L++ KE+ RH +G
Sbjct: 53 RAKAEVQL-DLPGGLLRVEEEDQDLYAAIDRMVDRLEIQLKRYKERRFVGRRHTYQG--- 108
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
P +V + +A + EEE+ IVR+K FEM P+ EA+ Q+E + HDF+ F
Sbjct: 109 ----PPPPEVRDMEALRKPEEEEGP---RIVRVKRFEMKPMDPEEAVFQMEALGHDFFVF 161
Query: 272 RNEETGEINIVYKRKAGGYGVIIP 295
RN +T EIN+VY+RK G YG+I P
Sbjct: 162 RNAKTDEINVVYRRKDGNYGLIEP 185
>gi|358068071|ref|ZP_09154541.1| hypothetical protein HMPREF9333_01422 [Johnsonella ignava ATCC
51276]
gi|356693615|gb|EHI55286.1| hypothetical protein HMPREF9333_01422 [Johnsonella ignava ATCC
51276]
Length = 177
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 111/200 (55%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRC 156
++ II GKN+E+T +++ V+ K K + + +VR L V+ ++
Sbjct: 1 MRYIITGKNIEVTPSLREAVKHKFSKL---EKYFTDDTEVRATLIVQKDS-------QKI 50
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ T K G +RAE++++ +Y+SID + II++++++ K K D + F+ ++E
Sbjct: 51 EVTIPTNK-GFIRAEQESQDMYSSIDAIQDIIEKQIKRYKNKLVDKKHDVIPFSDFFLKE 109
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
D +EE D+ I ++K F + P+ EA Q+E ++H FY F N ET
Sbjct: 110 ----------DYDTEESDEI---NIAKIKRFSIKPMDAEEACLQMELLNHSFYVFINSET 156
Query: 277 GEINIVYKRKAGGYGVIIPK 296
G +++VYKRK G YG+I P+
Sbjct: 157 GSVSVVYKRKNGTYGLIEPE 176
>gi|150388623|ref|YP_001318672.1| sigma 54 modulation protein/ribosomal protein S30EA [Alkaliphilus
metalliredigens QYMF]
gi|149948485|gb|ABR47013.1| sigma 54 modulation protein/ribosomal protein S30EA [Alkaliphilus
metalliredigens QYMF]
Length = 177
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 115/200 (57%), Gaps = 28/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRC 156
+K+I+ GKN+++TD +++ V+ K+GK + +EV+ + LSV+ K +I
Sbjct: 1 MKVIVSGKNVQVTDALRDMVQTKLGKL---DKYFNKEVEAQATLSVQ-----KSRQI--I 50
Query: 157 EVTL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
E+T+ F ++RAEE E +YASID V + + +LRK K K + K + ++
Sbjct: 51 EITIPFD--GSILRAEEKTEDMYASIDGVVNKLTSQLRKHKTKMENKT---KKYETIRF- 104
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
E + VE DV S+E +IV+ K F M P+ EA+ Q+E + H+FY F N E
Sbjct: 105 ENIPTYVE---DVDSDE------SKIVKTKRFAMKPMHSEEAVLQMELIGHNFYMFANAE 155
Query: 276 TGEINIVYKRKAGGYGVIIP 295
T E+N+VYKRK G YG+I P
Sbjct: 156 TDEVNVVYKRKDGNYGLIEP 175
>gi|302391069|ref|YP_003826889.1| 30S ribosomal protein S30P;sigma 54 modulation protein
[Acetohalobium arabaticum DSM 5501]
gi|302203146|gb|ADL11824.1| SSU ribosomal protein S30P;sigma 54 modulation protein
[Acetohalobium arabaticum DSM 5501]
Length = 183
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 117/199 (58%), Gaps = 21/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II+GKN+E+TD +K + EEK+GK + ++ ++ R+S+ E K I EV
Sbjct: 1 MKFIIRGKNIEITDALKQYAEEKIGK-IERYFDDDPPIEARISL---EVEKERHI--VEV 54
Query: 159 TLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T++ G+ +R EE +YASID V ++R++ K K K NR K++E
Sbjct: 55 TVYI--DGLTIRGEEVTGDMYASIDGVIEKLERQIHKYKTK----------INR-KIKEE 101
Query: 218 VTQVVENDADVQS-EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
++ N A+ +E+++ +IVR K F M P+ V EA+ Q+E +DHDF+ F N ++
Sbjct: 102 RKELKANLAESNLLDEDEEEDEPKIVRTKRFAMKPMNVEEAVMQMELLDHDFFVFFNSDS 161
Query: 277 GEINIVYKRKAGGYGVIIP 295
E+N+VYKR AG YG+I P
Sbjct: 162 EEVNVVYKRNAGDYGLIEP 180
>gi|152977399|ref|YP_001376916.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
cytotoxicus NVH 391-98]
gi|152026151|gb|ABS23921.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
cytotoxicus NVH 391-98]
Length = 179
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 27/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ EV V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-IERYFDTFPEVKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETHSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 217 --PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
T + D Q E ++D E+VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GSAKTAFILPDQLGQEEVQEDEL--ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNA 157
Query: 275 ETGEINIVYKRKAGGYGVI 293
+T E NIVY RK G YG+I
Sbjct: 158 DTNETNIVYGRKDGKYGLI 176
>gi|456012881|gb|EMF46569.1| Ribosomal subunit interface protein [Planococcus halocryophilus
Or1]
Length = 189
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 104/191 (54%), Gaps = 12/191 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T +++H+E+K+ K + + V + + EVT+
Sbjct: 6 IRGENIEVTPAIRDHIEKKIEKI---ERYFTDGANATAMVNLKTYNNSQTQTKVEVTI-P 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE + +YA+IDL+ S ++R++RK K K + R G V
Sbjct: 62 MKNLTLRAEERHDDLYAAIDLIVSKLERQIRKYKTKVNRKFRDRDGMG------VSFAVA 115
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
END Q++ ++++F IVR K F++ P+ EA+ Q+ + H F+ F + E+ E NIV
Sbjct: 116 ENDTRHQNDSDEEDFT--IVRTKQFDLKPMDEEEAVLQMNMLGHSFFVFTDAESNETNIV 173
Query: 283 YKRKAGGYGVI 293
YKRK G YG+I
Sbjct: 174 YKRKDGSYGLI 184
>gi|323486367|ref|ZP_08091692.1| hypothetical protein HMPREF9474_03443 [Clostridium symbiosum
WAL-14163]
gi|323695010|ref|ZP_08109156.1| ribosomal subunit interface protein [Clostridium symbiosum
WAL-14673]
gi|323400349|gb|EGA92722.1| hypothetical protein HMPREF9474_03443 [Clostridium symbiosum
WAL-14163]
gi|323500906|gb|EGB16822.1| ribosomal subunit interface protein [Clostridium symbiosum
WAL-14673]
Length = 175
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 24/194 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+N+ +T +K VEEK+GK + ++ + E + LSV ++ EVT+
Sbjct: 5 ITGRNINVTPGLKAAVEEKIGK-LERYFNQDTEAIITLSVEKER-------QKIEVTI-P 55
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K ++RAE+++ +Y SIDLV II+R+L+K K K D + F+
Sbjct: 56 VKGTIIRAEQESNDMYVSIDLVEEIIERQLKKYKNKIVDKKQAAIAFS------------ 103
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
D + E E D+ V +IV++K F M P+ EA Q+E + H FY F N ET ++N+V
Sbjct: 104 --DYFMNEEYESDDEV-KIVKVKRFAMKPMDPEEACVQMELLGHAFYVFLNSETDQVNVV 160
Query: 283 YKRKAGGYGVIIPK 296
YKRK YG+I P+
Sbjct: 161 YKRKGNTYGLIEPE 174
>gi|358065607|ref|ZP_09152143.1| hypothetical protein HMPREF9473_04206 [Clostridium hathewayi
WAL-18680]
gi|356696093|gb|EHI57716.1| hypothetical protein HMPREF9473_04206 [Clostridium hathewayi
WAL-18680]
Length = 176
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 114/198 (57%), Gaps = 23/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+T +++ +++K+GK + ++ + EV V LSV+ + + EV
Sbjct: 1 MRYTITGRNIEVTPGLRDAIQDKIGK-LDRYFNPDTEVIVTLSVQKDK-------QNIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++RAEE + +Y SIDLV II+R+++K K K D + + F+ L + E
Sbjct: 53 TIPVKGN-IIRAEESSSDMYVSIDLVEEIIERQIKKYKTKLIDKKQAAQSFSELFINEEP 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T D +++ IV+ K F + P+ EA Q+E + H+FY F N +T +
Sbjct: 112 TAA---DEEIK-----------IVKTKKFAVKPMDPEEACLQMELLGHNFYVFLNSDTDQ 157
Query: 279 INIVYKRKAGGYGVIIPK 296
+++VYKRK+ YG+I P+
Sbjct: 158 VSVVYKRKSNTYGLIEPE 175
>gi|315652709|ref|ZP_07905683.1| ribosomal subunit interface protein [Lachnoanaerobaculum saburreum
DSM 3986]
gi|419718916|ref|ZP_14246216.1| ribosomal subunit interface protein [Lachnoanaerobaculum saburreum
F0468]
gi|315484911|gb|EFU75319.1| ribosomal subunit interface protein [Lachnoanaerobaculum saburreum
DSM 3986]
gi|383304938|gb|EIC96323.1| ribosomal subunit interface protein [Lachnoanaerobaculum saburreum
F0468]
Length = 178
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 107/193 (55%), Gaps = 21/193 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+N+E+TD +K VEEK+ K + K+ E + LSV+ + EVT+ T
Sbjct: 5 ITGRNIEITDGLKKAVEEKLHK-LGKYFTEDTEAKITLSVQ-------KEAHKIEVTIPT 56
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ G++RAEE +E +Y SID V II+R+++K K K D + F+ L + E + V
Sbjct: 57 KQ-GLIRAEEVSEDMYVSIDKVEDIIERQIKKFKNKLVDRKQSGVSFSELFINEEDSDVE 115
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
E D +IV+ K F + P+ EA Q+E + HDFY FRN + EI +V
Sbjct: 116 EEDEI------------KIVKTKRFSIKPMDPEEACLQMELLAHDFYVFRNAISDEICVV 163
Query: 283 YKRKAGGYGVIIP 295
YKRK G YG+I P
Sbjct: 164 YKRKDGKYGIIEP 176
>gi|433461519|ref|ZP_20419128.1| putative ribosomal subunit interface protein [Halobacillus sp.
BAB-2008]
gi|432190019|gb|ELK47070.1| putative ribosomal subunit interface protein [Halobacillus sp.
BAB-2008]
Length = 185
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 114/203 (56%), Gaps = 37/203 (18%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--------EVDVRLSVRGGEFGKGPRIR 154
I+G+NLE+TD++K++VE+KVGK L R EV V LSV E +
Sbjct: 6 IRGENLEVTDSIKDYVEKKVGK-------LERYFDTPPTSEVHVNLSVYNDE-------Q 51
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
EVT+ K+ ++RAEE +YA+IDLV ++R++RK H NR
Sbjct: 52 TIEVTI-PMKNLLLRAEEHNTDLYAAIDLVVDKLERQIRK----------HKTKVNRRFR 100
Query: 215 REPVTQVVENDADVQSEE---EDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
+E + V + + +S++ +D+N +D +IV+ K F++ P+ EA Q++ + H+F+
Sbjct: 101 QEGAPKYVFAELERESQQGQIQDENELDVQIVKTKRFDLKPMDSEEAALQMDMLGHNFFV 160
Query: 271 FRNEETGEINIVYKRKAGGYGVI 293
F N T E NIVYKR+ G YG+I
Sbjct: 161 FTNASTDETNIVYKRRDGRYGLI 183
>gi|291459035|ref|ZP_06598425.1| ribosomal subunit interface protein [Oribacterium sp. oral taxon
078 str. F0262]
gi|291418289|gb|EFE92008.1| ribosomal subunit interface protein [Oribacterium sp. oral taxon
078 str. F0262]
Length = 179
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 111/199 (55%), Gaps = 22/199 (11%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
S+KL I G+N+ +TD ++N VE+K+GK R+ D +V + + E
Sbjct: 2 SMKLTIIGRNISVTDGLRNMVEKKLGKL----DKFFRQ-DTACTVT---LSTQKDMHKIE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K V+RAE++ E +Y SIDLV +I+R+++K ++K D + F+ + +
Sbjct: 54 VTIPVK-GTVIRAEQETEDMYQSIDLVVDVIERQIQKYRKKIIDRRQSALAFSEAFLEKE 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
Q DA+++ I+R K ++ P+T EA Q+E V H F+ F+N ++G
Sbjct: 113 --QDKTEDAEIR-----------ILRTKQIDLKPMTPEEACLQMELVGHSFFVFQNGDSG 159
Query: 278 EINIVYKRKAGGYGVIIPK 296
++N+VYKRK YG+I P+
Sbjct: 160 KVNVVYKRKENSYGLIEPE 178
>gi|256827729|ref|YP_003151688.1| ribosomal subunit interface protein [Cryptobacterium curtum DSM
15641]
gi|256583872|gb|ACU95006.1| ribosomal subunit interface protein [Cryptobacterium curtum DSM
15641]
Length = 188
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 107/193 (55%), Gaps = 15/193 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+ G+ + +TD +K++ EEK+G + V+ L+ EV L V P I CEVT+
Sbjct: 5 VTGRKMPVTDALKSYAEEKIGNSMKVMDIDPLIAEV--ILHVEQNRAIARPAI--CEVTM 60
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K H ++R EE E +YA+ID+ ++ + R+LRK K + + + +R +
Sbjct: 61 TAKGH-IIRVEEHEEDMYAAIDVAAAKVLRQLRKFKTRVVERNTRTDAAS---IRSAKSA 116
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+ D D EE D DE+VR K ++ PLT EA+ +++ + HDF+ + + +T E
Sbjct: 117 KL--DLDALMEELSD---DEVVREKSIDLQPLTEEEALVEIDLLGHDFFAYTDRDTNEFR 171
Query: 281 IVYKRKAGGYGVI 293
I+Y+R+ GGYG++
Sbjct: 172 ILYRRRNGGYGLL 184
>gi|228474304|ref|ZP_04059039.1| ribosomal subunit interface protein [Staphylococcus hominis SK119]
gi|314936949|ref|ZP_07844296.1| ribosomal subunit interface protein [Staphylococcus hominis subsp.
hominis C80]
gi|418619352|ref|ZP_13182180.1| ribosomal subunit interface protein [Staphylococcus hominis VCU122]
gi|228271663|gb|EEK13010.1| ribosomal subunit interface protein [Staphylococcus hominis SK119]
gi|313655568|gb|EFS19313.1| ribosomal subunit interface protein [Staphylococcus hominis subsp.
hominis C80]
gi|374824398|gb|EHR88356.1| ribosomal subunit interface protein [Staphylococcus hominis VCU122]
Length = 191
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 112/195 (57%), Gaps = 9/195 (4%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + ++ + V + V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGK-LERYFNNVPNAVAHVKVKTYQNSAT----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAEE + +YA IDLV+S ++R++RK K + + R G + E
Sbjct: 57 TI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKNRD-NGEPEPFIAEQQ 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T VV D + SE ++N + EI+R K F + P+ EA+ Q++ + HDFY F + ET
Sbjct: 115 T-VVNEDVEATSESSNENEI-EIIRSKQFSLKPMDSEEAVLQMDLLGHDFYIFTDRETDG 172
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 173 TSIVYRRKDGKYGLI 187
>gi|385800797|ref|YP_005837201.1| 30s ribosomal protein S30 [Halanaerobium praevalens DSM 2228]
gi|309390161|gb|ADO78041.1| SSU ribosomal protein S30P;sigma 54 modulation protein
[Halanaerobium praevalens DSM 2228]
Length = 194
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 10/200 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K++ GKN+++T +K H EEKV K + EV + + V K I EV
Sbjct: 1 MKIMTYGKNIDVTPALKKHAEEKVQKLERYFNGEPMEVQISMEVE-----KERHI--VEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T + K ++R EE +YASID V ++R++RK K K D K + + +
Sbjct: 54 TTYVKG-LILRGEEATGDMYASIDGVMDKLERQIRKYKTKIHDRFIERKQEYKEEYKAKR 112
Query: 219 TQVVENDADVQSEE--EDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ V N EE + D F ++V+ K F M P+ V EA Q++ +DHDF+ F N +T
Sbjct: 113 KEQVLNHQLGNEEETIDTDVFEPQVVKTKRFPMKPMNVEEACMQMDLLDHDFFVFHNPDT 172
Query: 277 GEINIVYKRKAGGYGVIIPK 296
E N+VYKRK G YG+I PK
Sbjct: 173 EETNVVYKRKDGNYGLIEPK 192
>gi|283798777|ref|ZP_06347930.1| ribosomal subunit interface protein [Clostridium sp. M62/1]
gi|291073460|gb|EFE10824.1| ribosomal subunit interface protein [Clostridium sp. M62/1]
gi|295092737|emb|CBK78844.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Clostridium
cf. saccharolyticum K10]
gi|295115080|emb|CBL35927.1| SSU ribosomal protein S30P/sigma 54 modulation protein
[butyrate-producing bacterium SM4/1]
Length = 175
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+++T ++ V EK+GK + ++ + E + LSV ++ EV
Sbjct: 1 MRYTITGRNIDVTPGLREAVIEKIGK-LERYFNQDTEAIITLSVTKDR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H ++RAEE + +Y SIDLV II+R+L+K K K D + F+ L V+E
Sbjct: 53 TIPVKGH-IIRAEEQSTDMYVSIDLVEEIIERQLKKYKRKLIDKKQAPVDFSELFVQE-- 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+SE +D+ +I ++K F M P+ EA Q+E + H FY F N ET E
Sbjct: 110 ----------ESEPDDEI---KIEKVKKFAMKPMDPEEACVQMELLGHSFYVFLNAETEE 156
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 157 VNVVYKRKGHTYGLIEPE 174
>gi|225175290|ref|ZP_03729285.1| sigma 54 modulation protein/ribosomal protein S30EA [Dethiobacter
alkaliphilus AHT 1]
gi|225169042|gb|EEG77841.1| sigma 54 modulation protein/ribosomal protein S30EA [Dethiobacter
alkaliphilus AHT 1]
Length = 177
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 111/200 (55%), Gaps = 29/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KLI++GKN+E+T+ ++ +V +++GK + K+ + E V L+V G + R EV
Sbjct: 1 MKLILRGKNIEVTNALEEYVNKRIGK-IDKYFDVDTEAQVTLTVEHG-------MHRVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK---EKESDHGRHMKGFNRLKVR 215
T + ++RAEE +YASID V ++R++ K K +++ G +K N L
Sbjct: 53 TAAIEGM-ILRAEESTGDMYASIDSVVDKLERQIAKYKTRINRKARQGGGIKAMNEL--- 108
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
V+ EEED + +V+ K F + P+ V EAI Q+ + HDF+ F N +
Sbjct: 109 ----------PQVEDEEEDWD----VVKTKRFVVKPMPVEEAILQMNLLGHDFFVFMNAD 154
Query: 276 TGEINIVYKRKAGGYGVIIP 295
++N++Y+RK G YG+I P
Sbjct: 155 NEDVNVIYRRKDGKYGLIEP 174
>gi|375010254|ref|YP_004983887.1| ribosomal subunit interface protein [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359289103|gb|AEV20787.1| Ribosomal subunit interface protein [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 182
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 111/191 (58%), Gaps = 16/191 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+NLE+T ++ +VE+K+GK + ++ +V V ++++ G+G + EVT+
Sbjct: 5 VRGENLEVTPALREYVEKKIGK-LERYFDGTEDVHVHVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
H ++RAEE E +YA+IDLV+ ++R++RK K K + R + K+ PV+
Sbjct: 59 MPHLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKVNRKLRDRE--KEAKLAAPVS--- 113
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ E ++ F EIVR K F + P+ EAI Q+ + H+F+ F N ET NIV
Sbjct: 114 ---IGASAAENEEEF--EIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNIV 168
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 169 YRRKDGKYGLI 179
>gi|355625042|ref|ZP_09047984.1| hypothetical protein HMPREF1020_02063 [Clostridium sp. 7_3_54FAA]
gi|354821489|gb|EHF05875.1| hypothetical protein HMPREF1020_02063 [Clostridium sp. 7_3_54FAA]
Length = 175
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 24/194 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+N+ +T +K +EEK+GK + ++ + E + LSV ++ EVT+
Sbjct: 5 ITGRNINVTPGLKAALEEKIGK-LERYFNQDTEAIITLSVEKER-------QKIEVTI-P 55
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K ++RAE+++ +Y SIDLV II+R+L+K K K D + F+
Sbjct: 56 VKGTIIRAEQESNDMYVSIDLVEEIIERQLKKYKNKIVDKKQAAIAFS------------ 103
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
D + E E D+ V +IV++K F M P+ EA Q+E + H FY F N ET ++N+V
Sbjct: 104 --DYFMNEEYESDDEV-KIVKVKRFAMKPMDPEEACVQMELLGHAFYVFLNSETDQVNVV 160
Query: 283 YKRKAGGYGVIIPK 296
YKRK YG+I P+
Sbjct: 161 YKRKGNTYGLIEPE 174
>gi|148656533|ref|YP_001276738.1| sigma 54 modulation protein/ribosomal protein S30EA [Roseiflexus
sp. RS-1]
gi|148568643|gb|ABQ90788.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Roseiflexus sp. RS-1]
Length = 193
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 119/212 (56%), Gaps = 36/212 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-----I 153
+ LI++ +N ++++ + H+E+K+ S L R +D R++ E + R +
Sbjct: 1 MDLIVKSRNGKISERQRQHIEQKL-------SRLDRYLD-RIAQVTVEHMEEMRRNEGNV 52
Query: 154 RRCEVTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
R +VT+ HGV VRAE A +YA+ID V +QR++ + K+K + R
Sbjct: 53 HRVQVTV-VGDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDKH---------WRRG 102
Query: 213 KVREPVTQVVE--------NDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENV 264
K+R Q+VE + AD Q EEE IVR K F++ P+ EA+EQ+E +
Sbjct: 103 KLRRQGGQIVEALPELAAPSLADTQEEEERPR----IVRTKEFQVKPMYSDEAVEQMELL 158
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
H+F+ F++ +TG++N++Y+R+ G YG+I+P+
Sbjct: 159 GHNFFIFQDADTGKLNVLYRRQDGNYGLIVPE 190
>gi|89100631|ref|ZP_01173489.1| ribosomal subunit interface protein [Bacillus sp. NRRL B-14911]
gi|89084655|gb|EAR63798.1| ribosomal subunit interface protein [Bacillus sp. NRRL B-14911]
Length = 184
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 20/194 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE+K+ K + K+ + +V ++++ + + EVT+
Sbjct: 5 IRGENIEVTPAIREYVEKKIAK-LEKYFTETPDANVHVNLKTYNNNRS----KVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL---KVREPVT 219
++ V+RAEED E +YA+IDL+ ++R++RK K K + R KG L EP
Sbjct: 59 MQNLVLRAEEDHEDMYAAIDLIVDKLERQIRKHKTKVNRKFRE-KGSPTLMFASFDEPEA 117
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
V+E EED++ E+VR K F++ P+ EAI Q+ + H FY F N ET
Sbjct: 118 PVLE--------EEDNDL--EVVRQKSFDLKPMDNEEAILQMNLLGHSFYVFTNAETNRT 167
Query: 280 NIVYKRKAGGYGVI 293
N+VYKRK G YG+I
Sbjct: 168 NVVYKRKDGRYGLI 181
>gi|333980676|ref|YP_004518621.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Desulfotomaculum kuznetsovii DSM 6115]
gi|333824157|gb|AEG16820.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum kuznetsovii DSM 6115]
Length = 173
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 110/199 (55%), Gaps = 28/199 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++G+N+E+T+ +K +VE+++GK V K+ L+ E V L+V R EV
Sbjct: 1 MKVQVRGRNVEVTNALKEYVEKRLGKLV-KYLDLIEEAQVTLTVEKDS-------HRVEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ +G++ R EE +YASIDLV +++++ + K GR + R
Sbjct: 53 TIPI--NGIILRGEESTGDMYASIDLVVEKLEKQIERYK------GRLYRRLGR------ 98
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
Q E A +EED IVR K F M P++V EA+ Q+ + H F+ F N +T
Sbjct: 99 --QNTEVKAGDNKKEEDG---PRIVRTKRFAMKPMSVDEAVMQMNLLGHSFFVFSNADTE 153
Query: 278 EINIVYKRKAGGYGVIIPK 296
++N+VY+RK G YG+I P+
Sbjct: 154 KVNVVYRRKDGNYGLIEPE 172
>gi|291533128|emb|CBL06241.1| ribosomal subunit interface protein [Megamonas hypermegale ART12/1]
Length = 179
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 111/192 (57%), Gaps = 25/192 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE+KVGK V K+ V E+ V L+V K I EVT+
Sbjct: 8 IRGKNIEVTPALRDYVEKKVGK-VTKYFDNVGEITVLLTV-----SKDRHI--VEVTVPV 59
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ G++ R +E +Y SIDLV I+R++RK K K R +G R ++ P +
Sbjct: 60 Q--GILLRGQEATMDMYTSIDLVIEKIERQIRKYKTKLEKRFR--EGSIRTEMMTPPAKP 115
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
VE D V +++ K F + P+ V EAI Q+ ++HDF+ +R+++T ++N+
Sbjct: 116 VEEDEAV------------VIKTKRFMVKPMDVQEAIMQMNLLNHDFFVYRDDKTEDVNV 163
Query: 282 VYKRKAGGYGVI 293
VYKRK G YG+I
Sbjct: 164 VYKRKDGKYGLI 175
>gi|335038976|ref|ZP_08532168.1| sigma 54 modulation protein/ribosomal protein S30EA
[Caldalkalibacillus thermarum TA2.A1]
gi|334181120|gb|EGL83693.1| sigma 54 modulation protein/ribosomal protein S30EA
[Caldalkalibacillus thermarum TA2.A1]
Length = 184
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 113/199 (56%), Gaps = 16/199 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T ++++VE+KVG+ + + +V V L V E E
Sbjct: 1 MKFNIRGENIEVTPALRDYVEKKVGRLERYFNEDITSDVYVTLKVTRDEHS-------VE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K ++RAEE + +YASIDLV ++R++RK K K R +L
Sbjct: 54 VTIPMPKL-LLRAEEKSLDMYASIDLVVEKLERQIRKYKTKIKRKFRQDGSMKQL----- 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
Q V A+ EEE D+ + EIVR+K F + P+ EA+ Q++ + H+F+ F + ET
Sbjct: 108 -FQEVNGQAEGTHEEETDDKI-EIVRIKRFNLKPMDAEEAVLQMDLLGHNFFVFSDAETQ 165
Query: 278 EINIVYKRKAGGYGVIIPK 296
++++VYKRK G YG+I P+
Sbjct: 166 KVSVVYKRKDGRYGLIQPE 184
>gi|269216146|ref|ZP_06160000.1| ribosomal subunit interface protein [Slackia exigua ATCC 700122]
gi|269130405|gb|EEZ61483.1| ribosomal subunit interface protein [Slackia exigua ATCC 700122]
Length = 189
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 109/199 (54%), Gaps = 23/199 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ + +TD+++++ EK+G ++ E +V L + P I CEVTL
Sbjct: 8 VTGRRITVTDSLRDYAIEKIGNSMKVLDDYSIEAEVILRIEKSHVV--PCI--CEVTLRP 63
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV---- 218
K H V+R EE +YA+ID+ ++ + R+LRK K + DH ++RE +
Sbjct: 64 KGH-VIRVEERDTDMYAAIDIAAAKVVRQLRKYKTRVIDH----------RMRETLKGAE 112
Query: 219 -TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
T V D D EE D DEIVR+K E P+T EA+ Q++ + HDF+ + + ++
Sbjct: 113 GTPVEPTDFDKLMEELSD---DEIVRVKEVEYSPMTEEEALIQIDLLGHDFFVYTDRDSN 169
Query: 278 EINIVYKRKAGGYGVIIPK 296
++ +VY+R GGYG++ PK
Sbjct: 170 DVQVVYRRSNGGYGMLKPK 188
>gi|261420552|ref|YP_003254234.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. Y412MC61]
gi|319768221|ref|YP_004133722.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. Y412MC52]
gi|261377009|gb|ACX79752.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. Y412MC61]
gi|317113087|gb|ADU95579.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. Y412MC52]
Length = 182
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 112/191 (58%), Gaps = 16/191 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ +VE+K+GK + ++ +V+V ++++ G+G + EVT+
Sbjct: 5 VRGENIEVTPALREYVEKKIGK-LERYFDRTDDVNVHVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
H ++RAEE E +YA+IDLV+ ++R++RK K K + R + K+ PV+
Sbjct: 59 IPHLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKVNRKLRDRE--KEAKLAAPVS--- 113
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ E ++ F EIVR K F + P+ EAI Q+ + H+F+ F N ET NIV
Sbjct: 114 ---IGASAAENEEEF--EIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNIV 168
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 169 YRRKDGKYGLI 179
>gi|402828529|ref|ZP_10877416.1| ribosomal subunit interface protein [Slackia sp. CM382]
gi|402286337|gb|EJU34812.1| ribosomal subunit interface protein [Slackia sp. CM382]
Length = 186
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 109/199 (54%), Gaps = 23/199 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ + +TD+++++ EK+G ++ E +V L + P I CEVTL
Sbjct: 5 VTGRRITVTDSLRDYAIEKIGNSMKVLDDYSIEAEVILRIEKSHVV--PCI--CEVTLRP 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV---- 218
K H V+R EE +YA+ID+ ++ + R+LRK K + DH ++RE +
Sbjct: 61 KGH-VIRVEERDTDMYAAIDIAAAKVVRQLRKYKTRVIDH----------RMRETLKGAE 109
Query: 219 -TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
T V D D EE D DEIVR+K E P+T EA+ Q++ + HDF+ + + ++
Sbjct: 110 GTPVEPTDFDKLMEELSD---DEIVRVKEVEYSPMTEEEALIQIDLLGHDFFVYTDRDSN 166
Query: 278 EINIVYKRKAGGYGVIIPK 296
++ +VY+R GGYG++ PK
Sbjct: 167 DVQVVYRRSNGGYGMLKPK 185
>gi|375085784|ref|ZP_09732407.1| ribosomal subunit interface protein [Megamonas funiformis YIT
11815]
gi|374566384|gb|EHR37627.1| ribosomal subunit interface protein [Megamonas funiformis YIT
11815]
Length = 177
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 109/192 (56%), Gaps = 25/192 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE+KVGK V K+ V E+ V L+V K I EVT+
Sbjct: 6 IRGKNIEVTPALRDYVEKKVGK-VTKYFDNVGEITVLLTV-----SKDRHI--VEVTVPV 57
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
G++ R +E +Y SIDLV I+R++RK K K R G R ++ P +
Sbjct: 58 --QGILLRGQEATMDMYTSIDLVIEKIERQIRKYKTKLEKRFRE--GSIRTEMMTPPAKP 113
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
VE D V +++ K F + P+ V EAI Q+ ++HDF+ +R+++T ++N+
Sbjct: 114 VEEDEAV------------VIKTKRFVVKPMDVQEAIMQMNLLNHDFFVYRDDKTEDVNV 161
Query: 282 VYKRKAGGYGVI 293
VYKRK G YG+I
Sbjct: 162 VYKRKDGKYGLI 173
>gi|291550761|emb|CBL27023.1| ribosomal subunit interface protein [Ruminococcus torques L2-14]
Length = 186
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 110/214 (51%), Gaps = 46/214 (21%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+E+T +K+ +E+K+GK + ++ E++V LSV G ++ EV
Sbjct: 1 MKFIISGKNIEVTPGLKDAIEQKLGK-LERYFTPETEINVTLSVEKGR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV II+R+LRK K N+L
Sbjct: 53 TIPVKGN-IIRSEQTSNDMYVSIDLVEEIIERQLRKYK-------------NKL------ 92
Query: 219 TQVVENDADVQSEEEDDN-----FVD-----------EIVRMKFFEMPPLTVSEAIEQLE 262
V N S N F D IVR K F + P+ +A Q+E
Sbjct: 93 --VARNQGHPTSYAPSGNSFRKEFFDSEEETTEDDEVRIVRTKKFGIKPMFPEDACVQME 150
Query: 263 NVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
+ H+F+ F N ET E+N+VYKRK G +G+I P+
Sbjct: 151 LLGHNFFVFSNAETDEVNVVYKRKDGSFGLIEPE 184
>gi|149182560|ref|ZP_01861032.1| ribosomal subunit interface protein [Bacillus sp. SG-1]
gi|148849752|gb|EDL63930.1| ribosomal subunit interface protein [Bacillus sp. SG-1]
Length = 189
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 111/193 (57%), Gaps = 14/193 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T +++HVE K+GK + ++ + + DV ++++ K + EVT+
Sbjct: 6 IRGENIEVTPAIRDHVENKIGK-LNRYFNETPDADVHVNLKVYPDKKT----KVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR--LKVREPVTQ 220
H V+RAEE E +YA+IDL+ ++R++RK K K + R KG + +E +T
Sbjct: 60 MPHLVLRAEERHEDMYAAIDLIVDKLERQIRKHKTKVNRKMRE-KGSPKEFFAAQEGLTT 118
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
N+ ++EE D E+VR K F + P+ EAI Q+ + H F+ F + ET N
Sbjct: 119 SQLNEKARETEEND-----EVVRTKQFNLKPMDSEEAILQMNLLGHSFFIFTDAETNATN 173
Query: 281 IVYKRKAGGYGVI 293
IVYKR+ G YG+I
Sbjct: 174 IVYKRRDGKYGLI 186
>gi|196249389|ref|ZP_03148087.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. G11MC16]
gi|196211146|gb|EDY05907.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. G11MC16]
Length = 182
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 113/194 (58%), Gaps = 22/194 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE+K+GK + ++ V V ++++ G+G + EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKIGK-LERYFDDTDHVHVNVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV- 221
H ++RAEE + +YA+IDLV+ ++R++RK K K + +L+ RE ++
Sbjct: 59 IPHLLLRAEERHDDMYAAIDLVTDKLERQIRKHKTKVN---------RKLRDREKGVKLA 109
Query: 222 --VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
V N A + E D+ F EIVR K F + P+ EAI Q+ + H+F+ F N ET
Sbjct: 110 APVPNGA--AAAENDEEF--EIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRT 165
Query: 280 NIVYKRKAGGYGVI 293
NIVY+RK G YG+I
Sbjct: 166 NIVYRRKDGRYGLI 179
>gi|166031027|ref|ZP_02233856.1| hypothetical protein DORFOR_00708 [Dorea formicigenerans ATCC
27755]
gi|166029294|gb|EDR48051.1| ribosomal subunit interface protein [Dorea formicigenerans ATCC
27755]
Length = 177
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 113/198 (57%), Gaps = 23/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+++T +K+ VE K+GK + ++ E+ V LSV+ ++ EV
Sbjct: 1 MKFIIIGKNIDVTPGLKDAVESKLGK-LQRYFTPDTEIHVTLSVQKEH-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E++++ +Y SIDLV +I+R+LRK K K + F++
Sbjct: 53 TIPVKGN-IIRSEQESDDMYVSIDLVEEVIERQLRKYKNKLVAKNQEGNNFSK------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ E + ++ +E +IVR K F + P+ +A Q+E + H+F+ F N E E
Sbjct: 105 -TLFETEESIEDDEV------KIVRTKRFGIKPMYPEDACVQMELLGHNFFVFFNAENEE 157
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK G +G+I P+
Sbjct: 158 VNVVYKRKDGSFGLIEPE 175
>gi|320450851|ref|YP_004202947.1| ribosomal subunit interface protein [Thermus scotoductus SA-01]
gi|320151020|gb|ADW22398.1| ribosomal subunit interface protein [Thermus scotoductus SA-01]
Length = 186
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 114/201 (56%), Gaps = 17/201 (8%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++ KLI G+NLE+TD ++ +VE K+ + + ++ + V LS+ G R +
Sbjct: 1 MNVYKLI--GRNLEITDAIREYVERKLSR-LDRYQNGELMAKVVLSLAGS--NHVARKAK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNRLKV 214
EV + G++R EE+ +YA+ID + ++ +L++ KE+ RH +G
Sbjct: 56 AEVQV-DLPGGLIRVEEEDPDLYAAIDRMVDRLETQLKRFKERRFIGKRHSYQG------ 108
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
P +V + +A + EEE+ +IVR+K FEM P+ EA Q+E + HDF+ FRN
Sbjct: 109 -PPPPEVQDLEALRKPEEEEGP---KIVRVKRFEMKPMDPEEAAFQMEALGHDFFVFRNA 164
Query: 275 ETGEINIVYKRKAGGYGVIIP 295
+T EIN++Y+RK G YG+I P
Sbjct: 165 KTDEINVIYRRKDGNYGLIEP 185
>gi|138896686|ref|YP_001127139.1| ribosomal subunit interface protein [Geobacillus
thermodenitrificans NG80-2]
gi|134268199|gb|ABO68394.1| Ribosomal subunit interface protein [Geobacillus
thermodenitrificans NG80-2]
Length = 182
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 111/195 (56%), Gaps = 24/195 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE+K+GK + ++ V V ++++ G+G + EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKIGK-LERYFDDTDHVHVNVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM-KGFNRLKVREPV--- 218
H ++RAEE + +YA+IDLV+ ++R++RK K K + R KG +K+ PV
Sbjct: 59 IPHLLLRAEERHDDMYAAIDLVTDKLERQIRKHKTKVNRKLRDREKG---VKLAAPVPNG 115
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
VEND + EIVR K F + P+ EAI Q+ + H+F+ F N ET
Sbjct: 116 AAAVENDEEF-----------EIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNR 164
Query: 279 INIVYKRKAGGYGVI 293
NIVY+RK G YG+I
Sbjct: 165 TNIVYRRKDGRYGLI 179
>gi|452993795|emb|CCQ94611.1| putative sigma-54 modulation protein [Clostridium ultunense Esp]
Length = 176
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 114/199 (57%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC-E 157
+KL GKN+E+T+ +K+ E+K+GK + K+ E +V SV R R+ E
Sbjct: 1 MKLNFVGKNMEVTEALKDVTEKKLGK-LDKYFQKDAEGNVTYSV--------ERNRKIIE 51
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ ++RAEE ++ +YASID +++R++RK K K R+ G
Sbjct: 52 VTI-NLPGTILRAEESSDDMYASIDKAVDVLERQMRKHKTKL--QRRYNNG--------- 99
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
T EN + +EED ++VR+K F+M P+ V EAI Q+E + H+F+ F N ++G
Sbjct: 100 ETIRFENIMPLNEDEEDR---PKVVRIKRFDMKPMNVEEAILQMELLRHNFFVFMNADSG 156
Query: 278 EINIVYKRKAGGYGVIIPK 296
++N++YKRK G YG+I P+
Sbjct: 157 DLNVLYKRKDGNYGLIEPE 175
>gi|228993894|ref|ZP_04153797.1| Ribosome-associated factor Y [Bacillus pseudomycoides DSM 12442]
gi|228999930|ref|ZP_04159502.1| Ribosome-associated factor Y [Bacillus mycoides Rock3-17]
gi|229007483|ref|ZP_04165080.1| Ribosome-associated factor Y [Bacillus mycoides Rock1-4]
gi|228753871|gb|EEM03312.1| Ribosome-associated factor Y [Bacillus mycoides Rock1-4]
gi|228759872|gb|EEM08846.1| Ribosome-associated factor Y [Bacillus mycoides Rock3-17]
gi|228765845|gb|EEM14496.1| Ribosome-associated factor Y [Bacillus pseudomycoides DSM 12442]
Length = 180
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 114/201 (56%), Gaps = 30/201 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ EV V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEVKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
T+ FT ++RAEE +YA+IDLV ++R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETHSDMYAAIDLVVDKVERQIRK----------HKTKVNR-KLREK 99
Query: 217 --PVTQVV--ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
P T + E A ++ +ED+ E+VR K F++ P+ V EAI Q++ + H+F+ F
Sbjct: 100 GSPKTAFILTEPAATLEEVKEDEL---ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFT 156
Query: 273 NEETGEINIVYKRKAGGYGVI 293
N +T E N+VY RK G YG+I
Sbjct: 157 NADTNETNVVYGRKDGKYGLI 177
>gi|384439973|ref|YP_005654697.1| Ribosomal subunit interface protein [Thermus sp. CCB_US3_UF1]
gi|359291106|gb|AEV16623.1| Ribosomal subunit interface protein [Thermus sp. CCB_US3_UF1]
Length = 186
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 115/201 (57%), Gaps = 17/201 (8%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++ KLI G+NLE+TD ++++VE K+ + + ++ + V LS+ G + R +
Sbjct: 1 MNVYKLI--GRNLEITDAIRDYVERKLSR-LDRYQNGELMAKVVLSLAGSAHVE--RKAK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNRLKV 214
EV + G+VR EE+ +YA+ID + ++ +L++ +E+ RH +G
Sbjct: 56 AEVQV-DLPGGLVRVEEEDPDLYAAIDRMVDRLETQLKRYRERRFIGKRHSYQG------ 108
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
P +V + +A + EEE+ IVR+K FEM P+ EA Q+E + HDF+ FRN
Sbjct: 109 -PPPPEVRDLEALRKPEEEEGP---RIVRVKRFEMKPMDPEEAAFQMEALGHDFFVFRNA 164
Query: 275 ETGEINIVYKRKAGGYGVIIP 295
ET +IN++Y+RK G YG+I P
Sbjct: 165 ETDQINVIYRRKDGNYGLIEP 185
>gi|425737697|ref|ZP_18855968.1| ribosomal subunit interface protein [Staphylococcus massiliensis
S46]
gi|425481354|gb|EKU48514.1| ribosomal subunit interface protein [Staphylococcus massiliensis
S46]
Length = 186
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 113/199 (56%), Gaps = 16/199 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I G NL +TD ++N++EEKVGK + ++ V V + V+ + + EV
Sbjct: 2 IKFEIHGDNLTITDAIRNYIEEKVGK-LERYFTNVPNVTAHVKVKTYQNSST----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAEE + +YA IDL+++ ++R++RK K K + +H N+ + PV
Sbjct: 57 TI-PLKNVTLRAEERHDDLYAGIDLINNKLERQVRKYKTKVN--RKHRAKGNKEDLFTPV 113
Query: 219 TQVVENDADVQSEEEDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
VEN +EEE N D EI++ K F + P+ EA+ Q+ + HDF+ F + +T
Sbjct: 114 ---VEN----TTEEEQQNEPDIEIIKSKEFALKPMDSEEAVLQMNLLGHDFFVFNDRDTE 166
Query: 278 EINIVYKRKAGGYGVIIPK 296
+IVYKRK G YG+I K
Sbjct: 167 GTSIVYKRKDGKYGLIQTK 185
>gi|392395512|ref|YP_006432114.1| ribosome-associated protein [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526590|gb|AFM02321.1| ribosome-associated protein Y (PSrp-1) [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 175
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 26/195 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GK +E+TD +K +V ++VGK + K+S +V V L V G R EVT
Sbjct: 5 VRGKQMEVTDALKEYVLKRVGK-LEKYSDEFMDVKVTLLVEEGR-------HRVEVT--A 54
Query: 163 KKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
HG ++R EE++ +YASIDLV ++R++ K R ++ + +
Sbjct: 55 PLHGMILRGEEESGDMYASIDLVVEKLERQIDKY---------------RTRINKRMRTK 99
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
V D +++ ++ +E+VR K F P++V EAI Q+ V H+FY F N +T IN+
Sbjct: 100 VLKDHEIEHPALHEDETEEVVRHKKFGTKPMSVEEAIMQMNLVGHNFYAFTNMDTNAINV 159
Query: 282 VYKRKAGGYGVIIPK 296
VY+R+ G YG++ P+
Sbjct: 160 VYRRRLGDYGLLEPE 174
>gi|315649819|ref|ZP_07902902.1| sigma 54 modulation protein/ribosomal protein S30EA [Paenibacillus
vortex V453]
gi|315274793|gb|EFU38174.1| sigma 54 modulation protein/ribosomal protein S30EA [Paenibacillus
vortex V453]
Length = 188
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 28/204 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--------VRLSVRGGEFGKG 150
++ I+G+ +++TD +K++V++K+ S L + D V LSV G
Sbjct: 1 MQFTIRGQQIDVTDALKDYVDKKL-------SRLDKYFDAPPTSEGYVTLSVIRG----- 48
Query: 151 PRIRRCEVTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
+ EVT+ GVV RAE+ ++ +YASID V ++R++RK K K + + G
Sbjct: 49 --LHTVEVTI--PLTGVVLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKIKQEGGL 104
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFY 269
L + DA+ Q E ++DN+ E+VR K F M P+ V EAI Q+ V H+F+
Sbjct: 105 KTLIAENGAAATSQMDAE-QVEYDEDNY--EVVRTKRFTMKPMDVEEAILQMNMVGHNFF 161
Query: 270 GFRNEETGEINIVYKRKAGGYGVI 293
F N +T E+N+VYKR G YG+I
Sbjct: 162 VFSNIDTQEVNVVYKRDDGKYGLI 185
>gi|210615353|ref|ZP_03290517.1| hypothetical protein CLONEX_02733 [Clostridium nexile DSM 1787]
gi|210150380|gb|EEA81389.1| hypothetical protein CLONEX_02733 [Clostridium nexile DSM 1787]
Length = 178
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 113/201 (56%), Gaps = 34/201 (16%)
Query: 102 IIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
II GKN+++T +K+ +E+K+GK + ++ E+ V LSV ++ EVT+
Sbjct: 4 IISGKNIDVTPGLKSTIEQKLGK-LERYFTPDTEIIVTLSVEKER-------QKIEVTIP 55
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K H ++R+E+ ++ +Y SIDLV +I+R+LRK K N+L R+
Sbjct: 56 VKGH-IIRSEQVSDDMYVSIDLVEEVIERQLRKYK-------------NKLIARQ----- 96
Query: 222 VENDADVQSE----EEDDNFVDEI--VRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+ + QSE E+D + DEI +R K F + P+ +A Q+E + H+F+ F N E
Sbjct: 97 -QEGGNFQSEFFEAEQDTSNNDEIKIIRTKRFGIKPMFPEDACVQMELLGHNFFVFSNAE 155
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
T E+N+VYKRK YG+I P+
Sbjct: 156 TDEVNVVYKRKNNTYGLIEPE 176
>gi|306490825|gb|ADM94946.1| ribosome-associated protein Y [uncultured candidate division JS1
bacterium]
Length = 183
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 119/195 (61%), Gaps = 16/195 (8%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
LII+GK ELTD++++++ +K+ K + K+ + E +SV K I EVTL
Sbjct: 3 LIIRGKQFELTDSIESYIRKKMKK-LQKYFDQIMEAVATVSVE-----KNRHI--FEVTL 54
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
KK ++RAEE+++ +Y SID V ++R+L IK KE + ++ +N++K +T+
Sbjct: 55 QAKK-AIIRAEEESDNIYTSIDRVVEKLERQL--IKYKEKLYYKYNNEYNKIK-EANITE 110
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
++D +++++D +IV+ K F + P++ EA Q+E + H FY F NEET +IN
Sbjct: 111 QEKSDIIAKADDKDI----KIVKTKKFVLKPMSPEEASLQMELLGHSFYVFNNEETDQIN 166
Query: 281 IVYKRKAGGYGVIIP 295
++YKRK G +G+I P
Sbjct: 167 VIYKRKDGNFGLIEP 181
>gi|167748492|ref|ZP_02420619.1| hypothetical protein ANACAC_03236 [Anaerostipes caccae DSM 14662]
gi|317471977|ref|ZP_07931309.1| sigma 54 modulation protein/S30EA ribosomal protein [Anaerostipes
sp. 3_2_56FAA]
gi|167652484|gb|EDR96613.1| ribosomal subunit interface protein [Anaerostipes caccae DSM 14662]
gi|316900381|gb|EFV22363.1| sigma 54 modulation protein/S30EA ribosomal protein [Anaerostipes
sp. 3_2_56FAA]
Length = 176
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 108/198 (54%), Gaps = 27/198 (13%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--VRLSVRGGEFGKGPRIRRCEV 158
II GKN+E+T+ ++ +EEK+G+ +L ++D V LSV+ ++ EV
Sbjct: 3 FIISGKNIEVTEGIRAAIEEKLGRL---DKYLTDDIDIIVTLSVQKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H ++RAE+D+ +Y SIDLV I++R++R+ K + G +
Sbjct: 53 TIPMKGH-IIRAEQDSADMYVSIDLVIDILERQIRRYKTRLMSKKYEGAGLKQ------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ +E+ D I+R K F + P+ V EA Q++ + H+F+ FRN +T E
Sbjct: 105 -------EFIDKDEDVDEDEIRIIRSKKFAIKPMDVEEACIQMDLLGHNFFVFRNADTFE 157
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 158 VNVVYKRKGNTYGLIEPE 175
>gi|346308229|ref|ZP_08850350.1| hypothetical protein HMPREF9457_02059 [Dorea formicigenerans
4_6_53AFAA]
gi|345903526|gb|EGX73289.1| hypothetical protein HMPREF9457_02059 [Dorea formicigenerans
4_6_53AFAA]
Length = 177
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 114/198 (57%), Gaps = 23/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+++T +K+ VE K+GK + ++ E+ V LSV+ ++ EV
Sbjct: 1 MKFIIIGKNIDVTPGLKDAVESKLGK-LQRYFTPDTEIHVTLSVQKEH-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E++++ +Y SIDLV +I+R+LRK K K ++ +G N K
Sbjct: 53 TIPVKGN-IIRSEQESDDMYVSIDLVEEVIERQLRKYKNKLV--AKNQEGNNFSKTLFET 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ +E D +V+ IVR K F + P+ +A Q+E + H+F+ F N E E
Sbjct: 110 EESIE-DGEVK-----------IVRTKRFGIKPMYPEDACVQMELLGHNFFVFFNAENEE 157
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK G +G+I P+
Sbjct: 158 VNVVYKRKDGSFGLIEPE 175
>gi|160941609|ref|ZP_02088940.1| hypothetical protein CLOBOL_06509 [Clostridium bolteae ATCC
BAA-613]
gi|158435503|gb|EDP13270.1| hypothetical protein CLOBOL_06509 [Clostridium bolteae ATCC
BAA-613]
Length = 187
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 114/208 (54%), Gaps = 25/208 (12%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLV-REVDVRLSVRGGEFG 148
+S + L ++ I G+N+E+T +K VE+K+GK L+H EV V LS +
Sbjct: 3 LSQEKELMFMRYTITGRNIEVTPGLKAAVEKKIGK--LEHFFTPDTEVIVALSAQKDR-- 58
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
++ EVT+ K + +RAEE + +Y SIDLV II+R++R+ ++K D +
Sbjct: 59 -----QKIEVTIPVKGN-TIRAEESSTDMYVSIDLVEEIIERQIRRYRKKLIDKKQAAIS 112
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
F++ A ++ E+E + +IV+ K F + P EA Q+E + H+F
Sbjct: 113 FSQ--------------AFIEEEDEVQDDEIQIVKTKKFAIKPTIPEEACLQMEMLGHNF 158
Query: 269 YGFRNEETGEINIVYKRKAGGYGVIIPK 296
Y F N +T ++N+VYKRK G YG+I P+
Sbjct: 159 YVFLNADTDQVNVVYKRKNGTYGLIEPE 186
>gi|153811224|ref|ZP_01963892.1| hypothetical protein RUMOBE_01616 [Ruminococcus obeum ATCC 29174]
gi|149832722|gb|EDM87806.1| ribosomal subunit interface protein [Ruminococcus obeum ATCC 29174]
Length = 175
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 108/198 (54%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+ ++ +K VE+K+GK + ++ EV V LSV ++ EV
Sbjct: 1 MKFIISGKNITVSQGLKTAVEDKLGK-LERYFTPDTEVVVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K ++R+E+ + +Y SIDLV +I+R+LRK K K D + F + +
Sbjct: 53 TI-PMKGNIIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKIVDKQQAAANFQKEYL---- 107
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
D D + +EE +I+R K F + P+ +A Q+E + H+F+ F N ET +
Sbjct: 108 ------DKDYEEDEEV-----KIIRTKKFGIKPMYPEDACVQMELLGHNFFVFFNAETEQ 156
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 157 VNVVYKRKGNTYGLIEPE 174
>gi|448239366|ref|YP_007403424.1| general stress protein [Geobacillus sp. GHH01]
gi|445208208|gb|AGE23673.1| general stress protein [Geobacillus sp. GHH01]
Length = 183
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 112/191 (58%), Gaps = 15/191 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ +VE+K+GK + ++ +V+V ++++ G+G + EVT+
Sbjct: 5 VRGENIEVTPALREYVEKKIGK-LERYFDRTDDVNVHVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
H ++RAEE E +YA+IDLV+ ++R++RK K K + +L+ RE ++V
Sbjct: 59 IPHLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKVN---------RKLRDREKEAKLV 109
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
S E++ EIVR K F + P+ EAI Q+ + H+F+ F N ET NIV
Sbjct: 110 APVPSGASAAENNEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNIV 169
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 170 YRRKDGKYGLI 180
>gi|153814581|ref|ZP_01967249.1| hypothetical protein RUMTOR_00795 [Ruminococcus torques ATCC 27756]
gi|145848075|gb|EDK24993.1| ribosomal subunit interface protein [Ruminococcus torques ATCC
27756]
Length = 198
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 23/209 (11%)
Query: 92 WDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP 151
+ L+S+ II GKN+E+T +K +E+K+GK + ++ E+ V LSV G
Sbjct: 7 YKKELNSMNFIISGKNIEVTPGLKEAIEQKLGK-LERYFTPETEIIVTLSVEKGR----- 60
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
++ EVT+ K ++R+E+ + +Y SIDLV +I+R+LRK K K +
Sbjct: 61 --QKIEVTI-PVKGSIIRSEQTSSDMYVSIDLVEEVIERQLRKYKNKLVAKSQG------ 111
Query: 212 LKVREPVTQV----VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHD 267
P V ++ + +E D+ IVR K F + P+ +A Q+E + H
Sbjct: 112 ----HPTAAVPSGSIKKEFIESDDESSDDDEIRIVRTKKFGIKPMFPEDACIQMELLGHS 167
Query: 268 FYGFRNEETGEINIVYKRKAGGYGVIIPK 296
F+ F N ET E+N+VYKRK G +G+I P+
Sbjct: 168 FFVFSNAETDEVNVVYKRKDGSFGLIEPE 196
>gi|284992660|ref|YP_003411214.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Geodermatophilus obscurus DSM 43160]
gi|284065905|gb|ADB76843.1| sigma 54 modulation protein/ribosomal protein S30EA
[Geodermatophilus obscurus DSM 43160]
Length = 228
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 19/208 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPR----I 153
++++++G+N+E+ + + HVE+KVG++ L + +DV L K PR
Sbjct: 1 MEIVVRGRNVEVPEHYRQHVEDKVGQSDRFDGKLKILRIDVELF-----HEKNPRQSGKC 55
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMKGFNRL 212
+R E+TL K VVRAE A YA++DL + + +LRK ++ HGR R+
Sbjct: 56 QRVEITLRGKG-PVVRAEAAAPDFYAALDLAAGKLDHRLRKAADRRRVHHGRRTPASVRV 114
Query: 213 KVREPVTQVVEN-DADVQSEEE------DDNFVDEIVRMKFFEMPPLTVSEAIEQLENVD 265
P T V E+ D D + E D++ +IVR K P+ V +A+ ++E V
Sbjct: 115 GGGAPDTDVTESFDRDRELAEGPHVTDLDEHLPGQIVREKHHPATPMHVDQALHEMELVG 174
Query: 266 HDFYGFRNEETGEINIVYKRKAGGYGVI 293
HDF+ F +TG+ +VY+R A YG+I
Sbjct: 175 HDFFLFLCADTGQPTVVYRRHAYDYGLI 202
>gi|295107859|emb|CBL21812.1| SSU ribosomal protein S30P/sigma 54 modulation protein
[Ruminococcus obeum A2-162]
Length = 175
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 108/198 (54%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+ ++ +K VE+K+GK + ++ EV V LSV ++ EV
Sbjct: 1 MKFIISGKNITVSPGLKTAVEDKLGK-LERYFTPDTEVIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K ++R+E+ + +Y SIDLV +I+R+LRK K K D + F +
Sbjct: 53 TI-PMKGNIIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKIVDKQQAAANFQK------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
D + EE+D+ +I+R K F + P+ +A Q+E + H+F+ F N ET +
Sbjct: 105 -----EYLDKEYEEDDEV---KIIRTKKFGIKPMYPEDACVQMELLGHNFFVFFNAETEQ 156
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 157 VNVVYKRKGNTYGLIEPE 174
>gi|225568877|ref|ZP_03777902.1| hypothetical protein CLOHYLEM_04956 [Clostridium hylemonae DSM
15053]
gi|225162376|gb|EEG74995.1| hypothetical protein CLOHYLEM_04956 [Clostridium hylemonae DSM
15053]
Length = 178
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 110/198 (55%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+++T ++ VE K+GK + K+ E+ V LSV ++ EV
Sbjct: 1 MKFIISGKNIDVTPGLRETVEHKLGK-LEKYFTSDTEIIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV +I+R+LRK K K RH +G N +
Sbjct: 53 TIPVKGN-IIRSEQVSSDMYVSIDLVEEVIERQLRKYKNKLV--ARHQEGGNFRQEFFES 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
E+D +V+ IVR K F + P+ +A Q++ + HDF+ F N +T E
Sbjct: 110 EYATEDDDEVK-----------IVRTKRFGIKPMYPEDACIQMDLLGHDFFVFCNADTDE 158
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VY+RK G +G+I P+
Sbjct: 159 VNVVYRRKNGTFGLIEPE 176
>gi|345023054|ref|ZP_08786667.1| hypothetical protein OTW25_17386 [Ornithinibacillus scapharcae
TW25]
Length = 182
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 115/204 (56%), Gaps = 31/204 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--EVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+NL++T++++ +VE+K+GK + K+ V+ EV V LSV + +R
Sbjct: 1 MKFNIRGENLKVTESIREYVEKKIGK-LEKYFDSVQTSEVYVNLSVYNNK-------QRI 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-----MKGFNR 211
EVT+ ++RAEE+ +YA+IDLV ++R++RK K K + R G N
Sbjct: 53 EVTI-PMTSLLLRAEEEHTDLYAAIDLVLDKLERQIRKYKTKVNRKPRQNGMPKYIGGNL 111
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
++ E + +V E EIV+ K F++ P+ EA+ Q++ + H FY F
Sbjct: 112 AEIPEVLDEVEEM---------------EIVKTKRFDLKPMDPEEAVLQMDLLGHAFYVF 156
Query: 272 RNEETGEINIVYKRKAGGYGVIIP 295
+N +GE N+VY+RK G YG+I P
Sbjct: 157 QNAVSGETNVVYRRKDGKYGLIEP 180
>gi|340757013|ref|ZP_08693617.1| ribosome-associated protein Y [Fusobacterium varium ATCC 27725]
gi|251834279|gb|EES62842.1| ribosome-associated protein Y [Fusobacterium varium ATCC 27725]
Length = 183
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 18/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I GK L +TD +K + E K+G+ H ++ E+DV LS + G EV
Sbjct: 1 MKMSIHGKQLVVTDAIKKYAETKLGRVEKYHDSII-ELDVSLSAVRTKTGSS---HTAEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ + + D + +YA+ID VS II+ +L+K KEK + + + G ++K P
Sbjct: 57 LAYLSGSTLKASCTDTD-LYAAIDQVSDIIEAQLKKHKEKRAINYGQVPGVKKIKYN-PE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T VE +A V +V++ + P+ + EAI QLE ++ FY F N ETGE
Sbjct: 115 TNTVEKEAAVN-----------VVKV-YLPPKPMDIEEAILQLELLNRVFYPFTNCETGE 162
Query: 279 INIVYKRKAGGYGVIIP 295
+NIVYKRK G Y + P
Sbjct: 163 MNIVYKRKDGDYAHVEP 179
>gi|339442561|ref|YP_004708566.1| hypothetical protein CXIVA_14980 [Clostridium sp. SY8519]
gi|338901962|dbj|BAK47464.1| hypothetical protein CXIVA_14980 [Clostridium sp. SY8519]
Length = 177
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 110/197 (55%), Gaps = 22/197 (11%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+II GKN+++T +++ VE+K+ K + +E + ++++ KG + EVT+
Sbjct: 3 IIIVGKNIDVTAGLRSVVEDKLSKL---EKYFTQETTIHVTMKAD---KGRH--KIEVTI 54
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K ++RAE+ +E +Y +IDLV +I+R+L+K K K + + R + E +
Sbjct: 55 PLKGR-IIRAEQVSEDMYQTIDLVEEVIERQLKKYKNKLINRKHQADDYFRPEYIEKEYE 113
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+++ ++ R+K FEM P+ + +A Q+E + H+FY F N ET E N
Sbjct: 114 DEDDEVQIE-------------RVKHFEMKPMFIEDACVQMELLGHNFYVFINAETDETN 160
Query: 281 IVYKRKAGGYGVIIPKG 297
+VYKRK GGYG+I P+
Sbjct: 161 VVYKRKNGGYGLIEPEA 177
>gi|392427779|ref|YP_006468773.1| ribosome-associated protein Y (PSrp-1) [Desulfosporosinus
acidiphilus SJ4]
gi|391357742|gb|AFM43441.1| ribosome-associated protein Y (PSrp-1) [Desulfosporosinus
acidiphilus SJ4]
Length = 174
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 109/199 (54%), Gaps = 27/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II+GK++ELTD +K +V ++VGK + K S +V V L V R EV
Sbjct: 1 MNIIIRGKHIELTDALKEYVTKRVGK-LEKFSDEFMDVQVTLLVERDR-------HRVEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T HG++ R EE+ E +Y+SID+V ++R++ K + + N+ ++R
Sbjct: 53 T--APIHGIILRGEEETEDMYSSIDMVVEKLERQIDKYRTR----------INK-RMRSK 99
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V + E A E + E+VR K F + P++V EAI Q+ + H F+ F N ET
Sbjct: 100 VMKDHEQPATATEEPRE-----EVVRQKKFPVKPMSVEEAIMQMNLIGHTFFVFTNSETQ 154
Query: 278 EINIVYKRKAGGYGVIIPK 296
E+N+VY R +G YG++ P+
Sbjct: 155 EMNVVYLRNSGDYGLLQPQ 173
>gi|338814370|ref|ZP_08626391.1| ribosomal subunit interface protein [Acetonema longum DSM 6540]
gi|337273692|gb|EGO62308.1| ribosomal subunit interface protein [Acetonema longum DSM 6540]
Length = 175
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 115/195 (58%), Gaps = 27/195 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+++T +K+HVE+++GK + K+ + E+ V L+V KG I EVT+
Sbjct: 5 VRGKNIDVTPALKDHVEKRIGK-ITKYFDNIGEIAVVLAVE-----KGRHI--VEVTVPV 56
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+G++ R EE +YASIDLV +++++ K K K S ++R+ + +V
Sbjct: 57 --NGILLRGEESTTDMYASIDLVIEKLEKQIGKYKTKLSR-----------RLRDGMLKV 103
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
D + +D+F ++V+ K F + P+ V EAI Q+ ++HDFY F N +T ++N+
Sbjct: 104 ---DLIPDNSGGNDDF--KVVKTKRFAIKPMDVEEAIMQMNLINHDFYVFMNADTEDVNV 158
Query: 282 VYKRKAGGYGVIIPK 296
+Y+RK G YG+I P+
Sbjct: 159 IYRRKDGHYGLIEPE 173
>gi|47567401|ref|ZP_00238114.1| ribosomal subunit interface protein [Bacillus cereus G9241]
gi|47568471|ref|ZP_00239171.1| ribosomal subunit interface protein [Bacillus cereus G9241]
gi|47569295|ref|ZP_00239980.1| ribosomal subunit interface protein [Bacillus cereus G9241]
gi|217962670|ref|YP_002341244.1| ribosomal subunit Interface protein [Bacillus cereus AH187]
gi|222098642|ref|YP_002532700.1| ribosomal subunit interface protein [Bacillus cereus Q1]
gi|228988412|ref|ZP_04148503.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229141916|ref|ZP_04270442.1| Ribosome-associated factor Y [Bacillus cereus BDRD-ST26]
gi|229158753|ref|ZP_04286811.1| Ribosome-associated factor Y [Bacillus cereus ATCC 4342]
gi|375287199|ref|YP_005107638.1| ribosomal subunit interface protein [Bacillus cereus NC7401]
gi|423375269|ref|ZP_17352606.1| ribosomal subunit interface protein [Bacillus cereus AND1407]
gi|423572127|ref|ZP_17548340.1| ribosomal subunit interface protein [Bacillus cereus MSX-A12]
gi|47554066|gb|EAL12432.1| ribosomal subunit interface protein [Bacillus cereus G9241]
gi|47554862|gb|EAL13213.1| ribosomal subunit interface protein [Bacillus cereus G9241]
gi|47556022|gb|EAL14360.1| ribosomal subunit interface protein [Bacillus cereus G9241]
gi|217063773|gb|ACJ78023.1| ribosomal subunit interface protein [Bacillus cereus AH187]
gi|221242701|gb|ACM15411.1| ribosomal subunit interface protein [Bacillus cereus Q1]
gi|228624737|gb|EEK81506.1| Ribosome-associated factor Y [Bacillus cereus ATCC 4342]
gi|228641531|gb|EEK97836.1| Ribosome-associated factor Y [Bacillus cereus BDRD-ST26]
gi|228771268|gb|EEM19743.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|358355726|dbj|BAL20898.1| ribosomal subunit interface protein [Bacillus cereus NC7401]
gi|401092688|gb|EJQ00813.1| ribosomal subunit interface protein [Bacillus cereus AND1407]
gi|401198683|gb|EJR05598.1| ribosomal subunit interface protein [Bacillus cereus MSX-A12]
Length = 180
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 111/200 (55%), Gaps = 28/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRK----------HKTKVNR-KLREK 99
Query: 218 VTQ----VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ ++ V E E+D E+VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GSMKTNFILPEAVAVLDEVEEDQL--ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTN 157
Query: 274 EETGEINIVYKRKAGGYGVI 293
+T E N+VY RK G YG+I
Sbjct: 158 ADTNETNVVYGRKDGKYGLI 177
>gi|373496161|ref|ZP_09586709.1| ribosomal subunit interface protein [Fusobacterium sp. 12_1B]
gi|371966072|gb|EHO83564.1| ribosomal subunit interface protein [Fusobacterium sp. 12_1B]
Length = 183
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 105/197 (53%), Gaps = 18/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I GK L +TD +K + E K+G+ H ++ ++DV LS + G EV
Sbjct: 1 MKMSIHGKQLVVTDAIKKYAETKLGRVEKYHDSII-DLDVSLSAVRTKTGSS---HTAEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ + + D + +YA+ID VS II+ +L+K KEK + + + G ++K +P
Sbjct: 57 LAYLSGSTLKASCTDTD-LYAAIDQVSDIIEAQLKKHKEKRAINYGQVPGVKKIKY-DPE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T VE +A V +V++ + P+ + EAI QLE ++ FY F N ETGE
Sbjct: 115 TNTVEKEAAVN-----------VVKV-YLPPKPMDIEEAILQLELLNRAFYPFTNCETGE 162
Query: 279 INIVYKRKAGGYGVIIP 295
+NIVYKRK G Y + P
Sbjct: 163 MNIVYKRKDGDYAHVEP 179
>gi|56421644|ref|YP_148962.1| ribosomal protein S30EA [Geobacillus kaustophilus HTA426]
gi|56381486|dbj|BAD77394.1| ribosomal protein S30EA [Geobacillus kaustophilus HTA426]
Length = 183
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 110/191 (57%), Gaps = 15/191 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+NLE+T ++ +VE+K+GK + ++ +V V ++++ G+G + EVT+
Sbjct: 5 VRGENLEVTPALREYVEKKIGK-LERYFDGTEDVHVHVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
H ++RAEE E +YA+IDLV+ ++R++RK K K + +L+ RE ++
Sbjct: 59 MPHLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKVN---------RKLRDREKEAKLA 109
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
S E++ EIVR K F + P+ EAI Q+ + H+F+ F N ET NIV
Sbjct: 110 APVPSGASAAENNEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNIV 169
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 170 YRRKDGKYGLI 180
>gi|154506052|ref|ZP_02042790.1| hypothetical protein RUMGNA_03594 [Ruminococcus gnavus ATCC 29149]
gi|153793551|gb|EDN75971.1| ribosomal subunit interface protein [Ruminococcus gnavus ATCC
29149]
Length = 185
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 113/205 (55%), Gaps = 29/205 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+++T +K+ +E+K+GK + ++ E+ V LSV ++ EV
Sbjct: 1 MNFIISGKNIDVTPGLKDAIEQKLGK-LERYFTPETEIIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR--- 215
T+ K + ++R+E+ ++ +Y S+DLV +I+R+LRK K N+L R
Sbjct: 53 TIPVKGN-IIRSEQTSDDMYVSVDLVEEVIERQLRKYK-------------NKLVARSQG 98
Query: 216 EPVTQVVENDADVQS-EEEDDNFVDE---IVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
P N+ + E EDD VD+ IVR K F + P+ +A Q++ + H F+ F
Sbjct: 99 HPTASGSGNNFKKEFFESEDDTSVDDEIRIVRTKRFGIKPMYPEDACIQMDLLGHAFFVF 158
Query: 272 RNEETGEINIVYKRKAGGYGVIIPK 296
N ET E+N+VYKRK G +G+I P+
Sbjct: 159 CNAETDEVNVVYKRKDGSFGLIEPE 183
>gi|297583377|ref|YP_003699157.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
selenitireducens MLS10]
gi|297141834|gb|ADH98591.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
selenitireducens MLS10]
Length = 183
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 119/199 (59%), Gaps = 24/199 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLV--REVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+NLE+T ++++VE+KVGK + K+ +V V++SV + ++ E+T+
Sbjct: 5 IRGENLEITPALRDYVEKKVGK-LEKYFETTPSSDVHVKMSVVNTD-------QKVEITI 56
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K ++RAEE +YA++DLV ++R++RK K K + R +G + LK
Sbjct: 57 PMPKL-LLRAEEKHADMYAAVDLVIEKLERQIRKHKTKVN---RKFRGEDSLKY------ 106
Query: 221 VVENDADVQSEEE--DDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ +N+ + SEEE DD++ EIVR K F++ P+ EAI Q++ + H+F+ F + +G
Sbjct: 107 MFKNELEPISEEETPDDDY--EIVRTKRFDLKPMDAEEAILQMDMLGHNFFVFSDAVSGV 164
Query: 279 INIVYKRKAGGYGVIIPKG 297
++VY+R G YG+I P+
Sbjct: 165 TSVVYRRSDGKYGLIEPEA 183
>gi|409358727|ref|ZP_11237086.1| hypothetical protein Dali7_12724 [Dietzia alimentaria 72]
Length = 233
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 26/222 (11%)
Query: 91 SWDGPLS------SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRG 144
++DGPL+ ++ I+G+N+E+ + + + K+ K + K S ++ DV L
Sbjct: 13 TFDGPLTEDPGIPDAQVTIRGRNVEVPEHFASRINTKLAK-IEKMSPAIQRFDVILL--- 68
Query: 145 GEFGKGPRI----RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK-- 198
PR+ +R E+T+ K GV RAE +T YA+++ + ++R++RK + +
Sbjct: 69 --HENNPRLSKVSQRIEITI-KGKSGVARAEAAEDTFYAALESAVAKLERQMRKARTRRK 125
Query: 199 --ESDHGRHMKGFNRLKVREPVTQVV-----ENDADVQSEEEDDNFVDEIVRMKFFEMPP 251
+S H R + DAD S + DD +IVR K + P
Sbjct: 126 ISQSGHRRPQSVAEATAELAATAAPAEALDRQGDADSYSGDVDDQLPGQIVRRKEHDGTP 185
Query: 252 LTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+TV EA+E++E V HDFY FR+ E+G +VY+R A YG++
Sbjct: 186 MTVDEALEKMELVGHDFYLFRDSESGAATVVYRRHAFDYGLL 227
>gi|418961687|ref|ZP_13513572.1| ribosome-associated factor Y [Lactobacillus salivarius SMXD51]
gi|380343782|gb|EIA32130.1| ribosome-associated factor Y [Lactobacillus salivarius SMXD51]
Length = 184
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 108/196 (55%), Gaps = 19/196 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCE 157
+K+ ++G+N+E+T ++ +VE+++ K + V L V + K E
Sbjct: 2 LKINVRGENIEVTGAIREYVEKRLAKLEKFFDNTADSTAHVNLKVYSDKTAK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KGF + P
Sbjct: 56 VTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKVNRKSRE-KGFKNFEF-AP 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V AD + E ED F EIVR K + P+ EA+ Q++ + HDF+ + + E G
Sbjct: 113 V-------ADEKEEVEDKKF--EIVRTKRLSLKPMDSEEAVLQMDMLGHDFFIYEDAENG 163
Query: 278 EINIVYKRKAGGYGVI 293
INIVY+R+ G YG+I
Sbjct: 164 GINIVYRRRDGRYGLI 179
>gi|163942874|ref|YP_001647758.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
weihenstephanensis KBAB4]
gi|229014357|ref|ZP_04171476.1| Ribosome-associated factor Y [Bacillus mycoides DSM 2048]
gi|423369156|ref|ZP_17346587.1| ribosomal subunit interface protein [Bacillus cereus VD142]
gi|423597557|ref|ZP_17573557.1| ribosomal subunit interface protein [Bacillus cereus VD078]
gi|423660003|ref|ZP_17635172.1| ribosomal subunit interface protein [Bacillus cereus VDM022]
gi|163865071|gb|ABY46130.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
weihenstephanensis KBAB4]
gi|228746957|gb|EEL96841.1| Ribosome-associated factor Y [Bacillus mycoides DSM 2048]
gi|401078286|gb|EJP86601.1| ribosomal subunit interface protein [Bacillus cereus VD142]
gi|401239089|gb|EJR45521.1| ribosomal subunit interface protein [Bacillus cereus VD078]
gi|401303664|gb|EJS09225.1| ribosomal subunit interface protein [Bacillus cereus VDM022]
Length = 180
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 113/196 (57%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVN---RKLREKGSMKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + V A + + EED+ E+VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 108 LPEAV---AVLDAVEEDEL---ELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|227891185|ref|ZP_04008990.1| ribosome-associated inhibitor protein Y [Lactobacillus salivarius
ATCC 11741]
gi|301301274|ref|ZP_07207429.1| ribosomal subunit interface protein [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|385840725|ref|YP_005864049.1| Ribosome-associated factor Y [Lactobacillus salivarius CECT 5713]
gi|417788602|ref|ZP_12436285.1| ribosomal subunit interface protein [Lactobacillus salivarius
NIAS840]
gi|417809958|ref|ZP_12456639.1| ribosome-associated inhibitor protein Y [Lactobacillus salivarius
GJ-24]
gi|227867059|gb|EEJ74480.1| ribosome-associated inhibitor protein Y [Lactobacillus salivarius
ATCC 11741]
gi|300214846|gb|ADJ79262.1| Ribosome-associated factor Y [Lactobacillus salivarius CECT 5713]
gi|300851150|gb|EFK78879.1| ribosomal subunit interface protein [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|334308779|gb|EGL99765.1| ribosomal subunit interface protein [Lactobacillus salivarius
NIAS840]
gi|335350882|gb|EGM52378.1| ribosome-associated inhibitor protein Y [Lactobacillus salivarius
GJ-24]
Length = 184
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 108/196 (55%), Gaps = 19/196 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCE 157
+K+ ++G+N+E+T ++ +VE+++ K + V L V + K E
Sbjct: 2 LKINVRGENIEVTGAIREYVEKRLAKLEKFFDNTADSTAHVNLKVYSDKTAK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KGF + P
Sbjct: 56 VTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKVNRKSRE-KGFKNFEF-AP 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V AD + E ED F EIVR K + P+ EA+ Q++ + HDF+ + + E G
Sbjct: 113 V-------ADEKEEVEDKKF--EIVRTKRLSLKPMDSEEAVLQMDMLGHDFFIYEDAENG 163
Query: 278 EINIVYKRKAGGYGVI 293
INIVY+R+ G YG+I
Sbjct: 164 GINIVYRRRDGRYGLI 179
>gi|345861350|ref|ZP_08813616.1| ribosome-associated protein Y [Desulfosporosinus sp. OT]
gi|344325615|gb|EGW37127.1| ribosome-associated protein Y [Desulfosporosinus sp. OT]
Length = 175
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 108/199 (54%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II+GK++ELTD +K +V ++VGK + K+S +V V L V R EV
Sbjct: 1 MNIIIRGKHIELTDALKEYVMKRVGK-LEKYSDEFMDVQVTLLVERDR-------HRVEV 52
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T HG ++R EE+ E +Y+SID+V ++R++ K + + + R LK EP
Sbjct: 53 T--APIHGMILRGEEETEDMYSSIDMVVEKLERQIDKYRTRINKRMRS----KVLKDHEP 106
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
Q V ND + EIVR K F P++V EAI Q+ + H F+ F N E+
Sbjct: 107 -KQAVMNDEPHE----------EIVRNKKFPAKPMSVEEAIMQMNLIGHTFFVFTNAESQ 155
Query: 278 EINIVYKRKAGGYGVIIPK 296
E+N+VY R G YG++ P+
Sbjct: 156 EMNVVYLRNNGDYGLLQPQ 174
>gi|291294809|ref|YP_003506207.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Meiothermus ruber DSM 1279]
gi|290469768|gb|ADD27187.1| sigma 54 modulation protein/ribosomal protein S30EA [Meiothermus
ruber DSM 1279]
Length = 183
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 112/203 (55%), Gaps = 25/203 (12%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++ KL+ G+ +E+T+ +KN++++K+ + + V E V LS+ +GPRI R
Sbjct: 1 MNVYKLV--GRQIEITEALKNYLDKKMARLDRYFDNNV-EAKVVLSM-----AQGPRIER 52
Query: 156 ---CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
E+ + G+VR EE +YA+ID ++ +L++ KE+ RH
Sbjct: 53 KAKAEIQVNVPG-GIVRVEEADPDMYAAIDRSIDRLEYQLKRYKERHFQRARH------- 104
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
V E V + A +++EEE + IVR K F M P+T +A ++E + HDF+ FR
Sbjct: 105 AVPEAV---LAGSAHLETEEEAE---PRIVRTKRFHMKPMTPEDAAFEMEALGHDFFVFR 158
Query: 273 NEETGEINIVYKRKAGGYGVIIP 295
N +T +IN++Y+R+ G YG+I P
Sbjct: 159 NADTEQINVIYRRRDGNYGLIEP 181
>gi|30265214|ref|NP_847591.1| ribosomal subunit interface protein [Bacillus anthracis str. Ames]
gi|47530736|ref|YP_022085.1| ribosomal subunit interface protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49188025|ref|YP_031278.1| ribosomal subunit interface protein [Bacillus anthracis str.
Sterne]
gi|52140376|ref|YP_086454.1| ribosomal subunit interface protein [Bacillus cereus E33L]
gi|65317161|ref|ZP_00390120.1| COG1544: Ribosome-associated protein Y (PSrp-1) [Bacillus anthracis
str. A2012]
gi|118480227|ref|YP_897378.1| sigma 54 modulation protein/30S ribosomal protein S30 [Bacillus
thuringiensis str. Al Hakam]
gi|165869962|ref|ZP_02214619.1| ribosomal subunit interface protein [Bacillus anthracis str. A0488]
gi|167635298|ref|ZP_02393613.1| ribosomal subunit interface protein [Bacillus anthracis str. A0442]
gi|167640491|ref|ZP_02398754.1| ribosomal subunit interface protein [Bacillus anthracis str. A0193]
gi|170687990|ref|ZP_02879203.1| ribosomal subunit interface protein [Bacillus anthracis str. A0465]
gi|170707806|ref|ZP_02898257.1| ribosomal subunit interface protein [Bacillus anthracis str. A0389]
gi|177652995|ref|ZP_02935322.1| ribosomal subunit interface protein [Bacillus anthracis str. A0174]
gi|190567823|ref|ZP_03020735.1| ribosomal subunit interface protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|196032848|ref|ZP_03100261.1| ribosomal subunit interface protein [Bacillus cereus W]
gi|196039551|ref|ZP_03106856.1| ribosomal subunit interface protein [Bacillus cereus NVH0597-99]
gi|196045660|ref|ZP_03112890.1| ribosomal subunit interface protein [Bacillus cereus 03BB108]
gi|218906364|ref|YP_002454198.1| ribosomal subunit interface protein [Bacillus cereus AH820]
gi|225867152|ref|YP_002752530.1| ribosomal subunit interface protein [Bacillus cereus 03BB102]
gi|227817948|ref|YP_002817957.1| ribosomal subunit interface protein [Bacillus anthracis str. CDC
684]
gi|228917792|ref|ZP_04081331.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228942324|ref|ZP_04104863.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228948907|ref|ZP_04111180.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228975253|ref|ZP_04135811.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981891|ref|ZP_04142186.1| Ribosome-associated factor Y [Bacillus thuringiensis Bt407]
gi|229094283|ref|ZP_04225359.1| Ribosome-associated factor Y [Bacillus cereus Rock3-42]
gi|229124695|ref|ZP_04253876.1| Ribosome-associated factor Y [Bacillus cereus 95/8201]
gi|229175859|ref|ZP_04303357.1| Ribosome-associated factor Y [Bacillus cereus MM3]
gi|229187399|ref|ZP_04314542.1| Ribosome-associated factor Y [Bacillus cereus BGSC 6E1]
gi|229600659|ref|YP_002869408.1| ribosomal subunit interface protein [Bacillus anthracis str. A0248]
gi|254686387|ref|ZP_05150246.1| ribosomal subunit interface protein [Bacillus anthracis str.
CNEVA-9066]
gi|254735592|ref|ZP_05193299.1| ribosomal subunit interface protein [Bacillus anthracis str.
Western North America USA6153]
gi|254744320|ref|ZP_05202000.1| ribosomal subunit interface protein [Bacillus anthracis str. Kruger
B]
gi|254755618|ref|ZP_05207651.1| ribosomal subunit interface protein [Bacillus anthracis str.
Vollum]
gi|254757073|ref|ZP_05209101.1| ribosomal subunit interface protein [Bacillus anthracis str.
Australia 94]
gi|301056651|ref|YP_003794862.1| ribosomal subunit interface protein [Bacillus cereus biovar
anthracis str. CI]
gi|376269086|ref|YP_005121798.1| Ribosomal subunit interface protein [Bacillus cereus F837/76]
gi|384189267|ref|YP_005575163.1| sigma (54) modulation protein/30S ribosomal protein S30 [Bacillus
thuringiensis serovar chinensis CT-43]
gi|386739043|ref|YP_006212224.1| sigma 54 modulation protein/30S ribosomal protein S30P [Bacillus
anthracis str. H9401]
gi|410677597|ref|YP_006929968.1| sigma (54) modulation protein/SSUribosomal protein S30P [Bacillus
thuringiensis Bt407]
gi|421508939|ref|ZP_15955849.1| sigma 54 modulation protein/30S ribosomal protein S30P [Bacillus
anthracis str. UR-1]
gi|421640940|ref|ZP_16081512.1| sigma 54 modulation protein/30S ribosomal protein S30P [Bacillus
anthracis str. BF1]
gi|423554365|ref|ZP_17530691.1| ribosomal subunit interface protein [Bacillus cereus ISP3191]
gi|452201678|ref|YP_007481759.1| Ribosomal subunit interface protein [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|30259891|gb|AAP29077.1| ribosomal subunit interface protein [Bacillus anthracis str. Ames]
gi|47505884|gb|AAT34560.1| ribosomal subunit interface protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181952|gb|AAT57328.1| ribosomal subunit interface protein [Bacillus anthracis str.
Sterne]
gi|51973845|gb|AAU15395.1| ribosomal subunit interface protein [Bacillus cereus E33L]
gi|118419452|gb|ABK87871.1| SSU ribosomal protein S30P [Bacillus thuringiensis str. Al Hakam]
gi|164714285|gb|EDR19805.1| ribosomal subunit interface protein [Bacillus anthracis str. A0488]
gi|167511534|gb|EDR86917.1| ribosomal subunit interface protein [Bacillus anthracis str. A0193]
gi|167529341|gb|EDR92093.1| ribosomal subunit interface protein [Bacillus anthracis str. A0442]
gi|170127363|gb|EDS96239.1| ribosomal subunit interface protein [Bacillus anthracis str. A0389]
gi|170668099|gb|EDT18849.1| ribosomal subunit interface protein [Bacillus anthracis str. A0465]
gi|172081770|gb|EDT66840.1| ribosomal subunit interface protein [Bacillus anthracis str. A0174]
gi|190561239|gb|EDV15212.1| ribosomal subunit interface protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|195994277|gb|EDX58232.1| ribosomal subunit interface protein [Bacillus cereus W]
gi|196023491|gb|EDX62168.1| ribosomal subunit interface protein [Bacillus cereus 03BB108]
gi|196029711|gb|EDX68313.1| ribosomal subunit interface protein [Bacillus cereus NVH0597-99]
gi|218538065|gb|ACK90463.1| ribosomal subunit interface protein [Bacillus cereus AH820]
gi|225790392|gb|ACO30609.1| ribosomal subunit interface protein [Bacillus cereus 03BB102]
gi|227004908|gb|ACP14651.1| ribosomal subunit interface protein [Bacillus anthracis str. CDC
684]
gi|228596103|gb|EEK53780.1| Ribosome-associated factor Y [Bacillus cereus BGSC 6E1]
gi|228607592|gb|EEK64916.1| Ribosome-associated factor Y [Bacillus cereus MM3]
gi|228658790|gb|EEL14449.1| Ribosome-associated factor Y [Bacillus cereus 95/8201]
gi|228689136|gb|EEL42959.1| Ribosome-associated factor Y [Bacillus cereus Rock3-42]
gi|228778003|gb|EEM26275.1| Ribosome-associated factor Y [Bacillus thuringiensis Bt407]
gi|228784532|gb|EEM32553.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228810663|gb|EEM57011.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228817368|gb|EEM63454.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228841841|gb|EEM86949.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229265067|gb|ACQ46704.1| ribosomal subunit interface protein [Bacillus anthracis str. A0248]
gi|300378820|gb|ADK07724.1| ribosomal subunit interface protein [Bacillus cereus biovar
anthracis str. CI]
gi|326942976|gb|AEA18872.1| sigma (54) modulation protein/SSUribosomal protein S30P [Bacillus
thuringiensis serovar chinensis CT-43]
gi|364514886|gb|AEW58285.1| Ribosomal subunit interface protein [Bacillus cereus F837/76]
gi|384388895|gb|AFH86556.1| Sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus
anthracis str. H9401]
gi|401181163|gb|EJQ88316.1| ribosomal subunit interface protein [Bacillus cereus ISP3191]
gi|401821115|gb|EJT20275.1| sigma 54 modulation protein/30S ribosomal protein S30P [Bacillus
anthracis str. UR-1]
gi|403391934|gb|EJY89198.1| sigma 54 modulation protein/30S ribosomal protein S30P [Bacillus
anthracis str. BF1]
gi|409176726|gb|AFV21031.1| sigma (54) modulation protein/SSUribosomal protein S30P [Bacillus
thuringiensis Bt407]
gi|452107071|gb|AGG04011.1| Ribosomal subunit interface protein [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 180
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 114/196 (58%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVN---RKLREKGSMKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + V A + + EED+ E+VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 108 LPEAV---AVLDAVEEDEL---ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|354558917|ref|ZP_08978170.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfitobacterium metallireducens DSM 15288]
gi|353545241|gb|EHC14693.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfitobacterium metallireducens DSM 15288]
Length = 175
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 113/200 (56%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ ++I+GK++E+TD +K +V ++VGK + K+S +V V L V G R EV
Sbjct: 1 MNIMIRGKHIEVTDALKEYVLKRVGK-LEKYSDEFMDVKVTLLVEEGR-------HRVEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T HG++ R EE++ +YASIDLV ++R++ K + + + R LK EP
Sbjct: 53 T--APIHGIILRGEEESTDMYASIDLVVEKLERQIDKYRTRINKRMRS----KVLKDHEP 106
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V +++ EEE ++VR K F + P++V EAI Q+ + H+F+ F N ++
Sbjct: 107 AHPV-----EIEDEEE------KVVRDKKFTLKPMSVEEAIMQMNLIGHNFFVFTNSDSQ 155
Query: 278 EINIVYKRKAGGYGVIIPKG 297
+N+VY+R G YG++ P+
Sbjct: 156 AVNVVYRRYNGDYGLLEPEA 175
>gi|410659496|ref|YP_006911867.1| Ribosomal subunit interface protein [Dehalobacter sp. DCA]
gi|410662474|ref|YP_006914845.1| Ribosomal subunit interface protein [Dehalobacter sp. CF]
gi|409021851|gb|AFV03882.1| Ribosomal subunit interface protein [Dehalobacter sp. DCA]
gi|409024830|gb|AFV06860.1| Ribosomal subunit interface protein [Dehalobacter sp. CF]
Length = 176
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 116/195 (59%), Gaps = 27/195 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GK +++TD +K++VE++V K + K+S ++ V LSV +R EVT
Sbjct: 5 VRGKQMKMTDALKDYVEKRVRK-LEKYSDDFLDIQVMLSVEKER-------QRVEVT--A 54
Query: 163 KKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK-VREPVTQ 220
+G ++R EE+ + +Y+SIDLV ++R++ K +++ G R+K +E +
Sbjct: 55 PLNGFLLRGEEETDDMYSSIDLVVDKLERQMEKYRKR--------IGKKRIKSTKEEPSY 106
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
++E+D EE DN + IV+ K F ++V EA Q++ + H+F+ F N +TG+IN
Sbjct: 107 ILEDD-----EEIFDN--NSIVKTKKFSAKLMSVDEAAMQMDLIGHNFFVFANADTGQIN 159
Query: 281 IVYKRKAGGYGVIIP 295
+VY+RK GGYG++ P
Sbjct: 160 VVYRRKHGGYGLLEP 174
>gi|253580000|ref|ZP_04857267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848519|gb|EES76482.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 175
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 24/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+ +T+ +K V++K+ K + ++ EV V LSV ++ EV
Sbjct: 1 MKFIISGKNITVTEGLKTAVQDKLSK-LERYFTPDTEVVVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV +I+R+LRK K K D + F + +
Sbjct: 53 TIPVKGN-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKIVDKQQAAANFQKAYL---- 107
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
D D +EE +I+R K F + P+ +A Q+E + H+F+ F N ET +
Sbjct: 108 ------DKDYDEDEEV-----KIIRTKKFGIKPMYPEDACVQMELLGHNFFVFYNAETEQ 156
Query: 279 INIVYKRKAGGYGVIIP 295
+N+VYKRK YG+I P
Sbjct: 157 VNVVYKRKGNTYGLIEP 173
>gi|229063846|ref|ZP_04200150.1| Ribosome-associated factor Y [Bacillus cereus AH603]
gi|229169897|ref|ZP_04297593.1| Ribosome-associated factor Y [Bacillus cereus AH621]
gi|423595628|ref|ZP_17571658.1| ribosomal subunit interface protein [Bacillus cereus VD048]
gi|228613611|gb|EEK70740.1| Ribosome-associated factor Y [Bacillus cereus AH621]
gi|228716483|gb|EEL68187.1| Ribosome-associated factor Y [Bacillus cereus AH603]
gi|401221522|gb|EJR28136.1| ribosomal subunit interface protein [Bacillus cereus VD048]
Length = 180
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 113/196 (57%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVN---RKLREKGSIKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + V A + + EED+ E+VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 108 LPEAV---AVLDAVEEDEL---ELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|404368966|ref|ZP_10974313.1| ribosomal subunit interface protein [Fusobacterium ulcerans ATCC
49185]
gi|313688260|gb|EFS25095.1| ribosomal subunit interface protein [Fusobacterium ulcerans ATCC
49185]
Length = 183
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 105/197 (53%), Gaps = 18/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I GK L +TD +K + E K+G+ H ++ ++DV LS + G EV
Sbjct: 1 MKMSIHGKQLVVTDAIKKYAETKLGRVEKYHDSII-DLDVSLSAVRTKTGSS---HTAEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ + + D + +YA+ID VS II+ +L+K KEK + + + G ++K +P
Sbjct: 57 LAYLSGSTLKASCTDTD-LYAAIDQVSDIIEAQLKKHKEKRAINYGQVPGVKKIK-YDPE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T VE +A V +V++ + P+ + EAI QLE ++ FY F N ETGE
Sbjct: 115 TNTVEKEAAVN-----------VVKV-YLPPKPMDIEEAILQLELLNRVFYPFTNCETGE 162
Query: 279 INIVYKRKAGGYGVIIP 295
+NIVYKRK G Y + P
Sbjct: 163 MNIVYKRKDGDYAHVEP 179
>gi|224072520|ref|XP_002335920.1| predicted protein [Populus trichocarpa]
gi|224161676|ref|XP_002338359.1| predicted protein [Populus trichocarpa]
gi|222836371|gb|EEE74778.1| predicted protein [Populus trichocarpa]
gi|222872022|gb|EEF09153.1| predicted protein [Populus trichocarpa]
Length = 93
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 61/95 (64%), Gaps = 17/95 (17%)
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
GKGPRIR+ EDAE + + KLRKIK+KESDHGRHM
Sbjct: 1 MGKGPRIRK----------------EDAEKSKQVLIWCRQLFN-KLRKIKDKESDHGRHM 43
Query: 207 KGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEI 241
KGFN+LKVREP++QVVENDAD S+ +DD+ +DE+
Sbjct: 44 KGFNKLKVREPMSQVVENDADTVSQRKDDDNLDEV 78
>gi|239623402|ref|ZP_04666433.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522368|gb|EEQ62234.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 187
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 25/208 (12%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLV-REVDVRLSVRGGEFG 148
+S + L ++ I G+N+E+T +K VE+K+GK L+H EV V LS +
Sbjct: 3 LSQEKELMIMRYTITGRNIEVTPGLKAAVEKKIGK--LEHFFTPDTEVIVALSAQKDR-- 58
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
++ EVT+ K + +RAEE + +Y SIDLV +I+R++R+ ++K D +
Sbjct: 59 -----QKIEVTIPVKGN-TIRAEESSTDMYVSIDLVEEVIERQIRRYRKKLIDKKQAAIS 112
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
F++ A ++ E+E + +IV+ K F + P EA Q+E + H F
Sbjct: 113 FSQ--------------AFIEEEDEVQDDEIQIVKTKKFAIKPTIPEEACLQMEMLGHSF 158
Query: 269 YGFRNEETGEINIVYKRKAGGYGVIIPK 296
Y F N +T ++N+VYKRK G YG+I P+
Sbjct: 159 YVFLNADTDQVNVVYKRKNGTYGLIEPE 186
>gi|121535515|ref|ZP_01667324.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermosinus
carboxydivorans Nor1]
gi|121305934|gb|EAX46867.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermosinus
carboxydivorans Nor1]
Length = 174
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 111/196 (56%), Gaps = 25/196 (12%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+I++GKN+++T +K++V ++VGK + K+ + E+ V L+V KG I EVT+
Sbjct: 3 IIVRGKNIDVTPALKDYVAKRVGK-ITKYFDALGEITVILTVE-----KGRHI--VEVTV 54
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
++R EE +YASIDLV +++++ K K K + +L+ T
Sbjct: 55 PVNGM-LLRGEEATTDMYASIDLVIEKLEKQIEKYKTKIA---------RKLRAGTFKTD 104
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+V + E ++F +V+ K F + P+ V EAI Q+ ++HDFY F N ET ++N
Sbjct: 105 LVAGNGG-----ESEDF--RVVKTKRFPVKPMDVEEAIMQMNLINHDFYVFMNAETEQVN 157
Query: 281 IVYKRKAGGYGVIIPK 296
++Y+RK G YG+I P+
Sbjct: 158 VIYRRKDGNYGLIEPE 173
>gi|387928636|ref|ZP_10131314.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
methanolicus PB1]
gi|387588222|gb|EIJ80544.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
methanolicus PB1]
Length = 184
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 107/192 (55%), Gaps = 16/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T ++ +VE+K+ K + + V V L + K EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKISKLERYFTETPKANVHVNLKTYSDKSAK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE E +YA+IDL++ ++R++RK K K + R N L T +
Sbjct: 58 PMTNLVLRAEEVHEDMYAAIDLIADKLERQIRKHKTKVNRKFREKGNVNSL-----FTTL 112
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+E + +V + EE++ EIVR K F++ P+ EAI Q+ + H+F+ F N ET NI
Sbjct: 113 ME-EPEVSAAEEENEL--EIVRQKSFDLKPMDSEEAILQMNLLGHNFFVFTNAETNRTNI 169
Query: 282 VYKRKAGGYGVI 293
VYKRK G YG+I
Sbjct: 170 VYKRKDGRYGLI 181
>gi|261409630|ref|YP_003245871.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Paenibacillus sp. Y412MC10]
gi|329928776|ref|ZP_08282625.1| ribosomal subunit interface protein [Paenibacillus sp. HGF5]
gi|261286093|gb|ACX68064.1| sigma 54 modulation protein/ribosomal protein S30EA [Paenibacillus
sp. Y412MC10]
gi|328937557|gb|EGG33975.1| ribosomal subunit interface protein [Paenibacillus sp. HGF5]
Length = 188
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 110/204 (53%), Gaps = 28/204 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--------VRLSVRGGEFGKG 150
++ I+G+ +E+TD +K++V++K+ S L + D V LSV G
Sbjct: 1 MQFTIRGQQIEVTDALKDYVDKKL-------SRLDKYFDAPPTSEGYVTLSVIRG----- 48
Query: 151 PRIRRCEVTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
+ EVT+ GVV RAE+ ++ +YASID V ++R++RK K K + + G
Sbjct: 49 --LHTVEVTI--PLTGVVLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKIKQEGGL 104
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFY 269
L + DA+ Q E ++D + E+VR K F M P+ V EAI Q+ V H+F+
Sbjct: 105 KTLIAENGAAATSQVDAE-QVEYDEDEY--EVVRTKRFTMKPMDVEEAILQMNMVGHNFF 161
Query: 270 GFRNEETGEINIVYKRKAGGYGVI 293
F N +T E+N+VYKR G YG+I
Sbjct: 162 VFSNIDTQEVNVVYKRDDGKYGLI 185
>gi|229135997|ref|ZP_04264757.1| Ribosome-associated factor Y [Bacillus cereus BDRD-ST196]
gi|423490334|ref|ZP_17467016.1| ribosomal subunit interface protein [Bacillus cereus BtB2-4]
gi|423496058|ref|ZP_17472702.1| ribosomal subunit interface protein [Bacillus cereus CER057]
gi|423497148|ref|ZP_17473765.1| ribosomal subunit interface protein [Bacillus cereus CER074]
gi|423513367|ref|ZP_17489897.1| ribosomal subunit interface protein [Bacillus cereus HuA2-1]
gi|423519843|ref|ZP_17496324.1| ribosomal subunit interface protein [Bacillus cereus HuA2-4]
gi|423670706|ref|ZP_17645735.1| ribosomal subunit interface protein [Bacillus cereus VDM034]
gi|423673067|ref|ZP_17648006.1| ribosomal subunit interface protein [Bacillus cereus VDM062]
gi|228647455|gb|EEL03530.1| Ribosome-associated factor Y [Bacillus cereus BDRD-ST196]
gi|401149894|gb|EJQ57361.1| ribosomal subunit interface protein [Bacillus cereus CER057]
gi|401157422|gb|EJQ64820.1| ribosomal subunit interface protein [Bacillus cereus HuA2-4]
gi|401162868|gb|EJQ70221.1| ribosomal subunit interface protein [Bacillus cereus CER074]
gi|401294993|gb|EJS00618.1| ribosomal subunit interface protein [Bacillus cereus VDM034]
gi|401311167|gb|EJS16475.1| ribosomal subunit interface protein [Bacillus cereus VDM062]
gi|402430013|gb|EJV62095.1| ribosomal subunit interface protein [Bacillus cereus BtB2-4]
gi|402445611|gb|EJV77480.1| ribosomal subunit interface protein [Bacillus cereus HuA2-1]
Length = 180
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSVKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
E A + + EED+ E+VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 110 -----EAVAVLDAVEEDEL---ELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|403382582|ref|ZP_10924639.1| ribosome-associated factor y [Paenibacillus sp. JC66]
Length = 184
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 111/200 (55%), Gaps = 21/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G N+E+T +++ +VE+K+GK S L E +V L V ++R E
Sbjct: 1 MKFNIRGANMEVTPSLREYVEKKLGKLERYFESPLTSEANVTLRVVKD-------VQRVE 53
Query: 158 VTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
VT+ GV+ RAE+ + +YASID V ++R++RK K + + R G +LK
Sbjct: 54 VTI--PLTGVLLRAEDKSNDMYASIDAVVDKLERQIRKHKTRVNRKLRQESG--QLK--- 106
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
VE+ A E+D+F E+VR K F + P+ V EAI Q+ + H+F+ F N E
Sbjct: 107 --NYFVEDPALNGGAAEEDSF--ELVRTKRFTLKPMDVEEAILQMNMIGHNFFVFSNTED 162
Query: 277 GE-INIVYKRKAGGYGVIIP 295
E +N+VYKR G YG+I P
Sbjct: 163 SENVNVVYKRHDGTYGLIEP 182
>gi|414161418|ref|ZP_11417678.1| ribosomal subunit interface protein [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876314|gb|EKS24225.1| ribosomal subunit interface protein [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 187
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 110/195 (56%), Gaps = 14/195 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++E+KVGK + ++ V VD + V+ + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKVGK-LERYFTNVPNVDAHVKVKTYANSST----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R + +EP
Sbjct: 57 TI-PLKDVTLRAEERNDDLYAGIDLITNKLERQVRKYKTRVNRKKR------KENEKEPF 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ A ++ ++D+N EI+R K F + P+ EA+ Q++ + HDF+ F + +T
Sbjct: 110 PSIPA--ATPETADQDNNDEIEIIRSKQFSLKPMDSEEAVLQMDLLGHDFFIFTDRDTDG 167
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 168 TSIVYRRKDGKYGLI 182
>gi|323489910|ref|ZP_08095132.1| hypothetical protein GPDM_11180 [Planococcus donghaensis MPA1U2]
gi|323396417|gb|EGA89241.1| hypothetical protein GPDM_11180 [Planococcus donghaensis MPA1U2]
Length = 189
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T +++H+E+K+ K + + V + + EVT+
Sbjct: 6 IRGENIEVTPAIRDHIEKKIEKI---ERYFTDGANATAMVNLKTYNHSQT--KVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE + +YA+IDL+ S ++R++RK K K + R G V
Sbjct: 60 MKNLTLRAEERHDDLYAAIDLIVSKLERQIRKYKTKVNRKFRDRDGMG------VSFAVA 113
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
END QS+ + D IVR K F++ P+ EA+ Q+ + H F+ F + E+ E NIV
Sbjct: 114 ENDTRHQSDSDSDEEDFTIVRTKQFDLKPMDEEEAVLQMNMLGHSFFVFTDAESNETNIV 173
Query: 283 YKRKAGGYGVI 293
YKRK G YG+I
Sbjct: 174 YKRKDGSYGLI 184
>gi|229032806|ref|ZP_04188762.1| Ribosome-associated factor Y [Bacillus cereus AH1271]
gi|423386676|ref|ZP_17363931.1| ribosomal subunit interface protein [Bacillus cereus BAG1X1-2]
gi|423388551|ref|ZP_17365777.1| ribosomal subunit interface protein [Bacillus cereus BAG1X1-3]
gi|423399982|ref|ZP_17377155.1| ribosomal subunit interface protein [Bacillus cereus BAG2X1-2]
gi|423462033|ref|ZP_17438829.1| ribosomal subunit interface protein [Bacillus cereus BAG5X2-1]
gi|423479325|ref|ZP_17456040.1| ribosomal subunit interface protein [Bacillus cereus BAG6X1-1]
gi|423526997|ref|ZP_17503442.1| ribosomal subunit interface protein [Bacillus cereus HuB1-1]
gi|228728479|gb|EEL79499.1| Ribosome-associated factor Y [Bacillus cereus AH1271]
gi|401133888|gb|EJQ41511.1| ribosomal subunit interface protein [Bacillus cereus BAG5X2-1]
gi|401632097|gb|EJS49887.1| ribosomal subunit interface protein [Bacillus cereus BAG1X1-2]
gi|401642626|gb|EJS60332.1| ribosomal subunit interface protein [Bacillus cereus BAG1X1-3]
gi|401656609|gb|EJS74124.1| ribosomal subunit interface protein [Bacillus cereus BAG2X1-2]
gi|402425629|gb|EJV57775.1| ribosomal subunit interface protein [Bacillus cereus BAG6X1-1]
gi|402454160|gb|EJV85953.1| ribosomal subunit interface protein [Bacillus cereus HuB1-1]
Length = 180
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 112/196 (57%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSVKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
E A + + EED+ E+VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 110 -----EAVAVLDAVEEDEL---ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|335357611|ref|ZP_08549481.1| ribosome-associated factor Y [Lactobacillus animalis KCTC 3501]
Length = 184
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 108/196 (55%), Gaps = 18/196 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCE 157
+K+ ++G+N+E+T ++ +VE+K+ K V L V + K E
Sbjct: 2 LKINVRGENIEVTGAIREYVEKKLSKLEKYFEDTSNSTAHVNLKVYSDKNSK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KGF +
Sbjct: 56 VTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKLNRKSRE-KGFKHM----- 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ V + Q+E+ED F E+VR K + P+ V EAI Q++ + HDF+ + + ET
Sbjct: 109 --EFVPTEDPKQAEKEDKKF--EVVRTKSVSLKPMDVEEAILQMDMLGHDFFIYEDAETE 164
Query: 278 EINIVYKRKAGGYGVI 293
NIVY+R+ G YG+I
Sbjct: 165 GTNIVYRRRDGRYGLI 180
>gi|297531364|ref|YP_003672639.1| ribosomal subunit interface protein [Geobacillus sp. C56-T3]
gi|297254616|gb|ADI28062.1| ribosomal subunit interface protein [Geobacillus sp. C56-T3]
Length = 183
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 112/191 (58%), Gaps = 15/191 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ +VE+K+GK + ++ +V+V ++++ G+G + EVT+
Sbjct: 5 VRGENIEVTPALREYVEKKIGK-LERYFDRTDDVNVHVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
H ++RAEE E +YA+IDLV+ ++R++RK K K + +L+ RE ++
Sbjct: 59 IPHLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKVN---------RKLRDREKEAKLA 109
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ S E++ EIVR K F + P+ EAI Q+ + H+F+ F N ET NIV
Sbjct: 110 APVSIGASAAENNEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNIV 169
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 170 YRRKDGKYGLI 180
>gi|89897617|ref|YP_521104.1| hypothetical protein DSY4871 [Desulfitobacterium hafniense Y51]
gi|219670744|ref|YP_002461179.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Desulfitobacterium hafniense DCB-2]
gi|423076126|ref|ZP_17064840.1| ribosomal subunit interface protein [Desulfitobacterium hafniense
DP7]
gi|89337065|dbj|BAE86660.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219541004|gb|ACL22743.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfitobacterium hafniense DCB-2]
gi|361852943|gb|EHL05141.1| ribosomal subunit interface protein [Desulfitobacterium hafniense
DP7]
Length = 175
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 109/194 (56%), Gaps = 24/194 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GK +E+TD +K +V ++VGK + K+S +V V L V G R EVT
Sbjct: 5 VRGKQMEVTDALKEYVLKRVGK-LEKYSDEFMDVKVTLLVEEGR-------HRVEVTAPL 56
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE++ +YASIDLV ++R++ K + R+ R +
Sbjct: 57 QGM-ILRGEEESGDMYASIDLVVEKLERQIDKYR-------------TRINKRMRTKVLK 102
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+++ + + EDD+ +E+VR K F P++V EAI Q+ V H+FY F N +T IN+V
Sbjct: 103 DHEIEHPALYEDDS--EEVVRHKKFGTKPMSVEEAIMQMNLVGHNFYAFTNMDTNVINVV 160
Query: 283 YKRKAGGYGVIIPK 296
Y+R++G YG++ P+
Sbjct: 161 YRRRSGDYGLLEPE 174
>gi|229020402|ref|ZP_04177157.1| Ribosome-associated factor Y [Bacillus cereus AH1273]
gi|229026631|ref|ZP_04182973.1| Ribosome-associated factor Y [Bacillus cereus AH1272]
gi|423416923|ref|ZP_17394012.1| ribosomal subunit interface protein [Bacillus cereus BAG3X2-1]
gi|228734664|gb|EEL85316.1| Ribosome-associated factor Y [Bacillus cereus AH1272]
gi|228740881|gb|EEL91124.1| Ribosome-associated factor Y [Bacillus cereus AH1273]
gi|401108341|gb|EJQ16272.1| ribosomal subunit interface protein [Bacillus cereus BAG3X2-1]
Length = 180
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 112/196 (57%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSVKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
E A + + EED+ E+VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 110 -----EAVAVLDAVEEDEL---ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|418329742|ref|ZP_12940795.1| ribosomal subunit interface protein [Staphylococcus epidermidis
14.1.R1.SE]
gi|418632602|ref|ZP_13195032.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU128]
gi|365229865|gb|EHM70993.1| ribosomal subunit interface protein [Staphylococcus epidermidis
14.1.R1.SE]
gi|374832172|gb|EHR95892.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU128]
Length = 189
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
N AD E D EI+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTTNNQADDIESENDI----EIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRETDG 170
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 171 TSIVYRRKDGKYGLI 185
>gi|23099953|ref|NP_693419.1| hypothetical protein OB2498 [Oceanobacillus iheyensis HTE831]
gi|22778184|dbj|BAC14454.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 185
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 111/202 (54%), Gaps = 24/202 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T +K +VE+K+ K S +V V LSV E +R E
Sbjct: 1 MKFNIRGENIEVTGAIKEYVEKKISKLERYFDSAPNTDVHVNLSVYNDE-------QRIE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLK 213
VT+ + ++R E +YA++DLV ++R++RK I K +G F +
Sbjct: 54 VTI-PMTNLLLRGEVQHIDLYAAVDLVVDKLERQIRKHKTKINRKFRQNGSPKHAFAEM- 111
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
E +A + +EED+N + EIVR K F + P+ EAI Q++ + H+F+ F N
Sbjct: 112 ---------EKEARLAEDEEDENQL-EIVRTKRFNLKPMDSEEAILQMDMLGHEFFVFTN 161
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
+++GE N+VY+R+ G YG+I P
Sbjct: 162 DDSGETNVVYRRRDGKYGLIEP 183
>gi|375089179|ref|ZP_09735511.1| ribosomal subunit interface protein [Dolosigranulum pigrum ATCC
51524]
gi|374560493|gb|EHR31858.1| ribosomal subunit interface protein [Dolosigranulum pigrum ATCC
51524]
Length = 193
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 110/197 (55%), Gaps = 17/197 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+TD ++ +VE KVGK V K+ V E + ++++ + + EVT+
Sbjct: 6 VRGENIEVTDAIREYVEAKVGK-VEKYFTDVPEANAHVNLKT----YSDKTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV---- 218
+ V+RAEE + +Y S+DLVS ++R++RK K K + R ++ EPV
Sbjct: 60 LPNVVLRAEETSPDMYGSVDLVSDKLERQIRKYKTKVNRRQRRQT----VEAPEPVDPDL 115
Query: 219 --TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
T V D + + E D V EIVR K ++ P+ EA+ Q++ + HDF+ F + ET
Sbjct: 116 LDTHVEGLDGEETEQLESDAGV-EIVRTKQLDLKPMHAEEAVLQMDMLGHDFFIFEDAET 174
Query: 277 GEINIVYKRKAGGYGVI 293
NIVYKR G YG++
Sbjct: 175 ESTNIVYKRHDGKYGLL 191
>gi|423520975|ref|ZP_17497448.1| ribosomal subunit interface protein [Bacillus cereus HuA4-10]
gi|401180072|gb|EJQ87235.1| ribosomal subunit interface protein [Bacillus cereus HuA4-10]
Length = 180
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSVKTNFIHP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
E A + + EED+ E+VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 110 -----EAVAVLDAVEEDEL---ELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|242242122|ref|ZP_04796567.1| ribosome-associated inhibitor protein Y [Staphylococcus epidermidis
W23144]
gi|416124889|ref|ZP_11595684.1| ribosomal subunit interface protein [Staphylococcus epidermidis
FRI909]
gi|418614088|ref|ZP_13177075.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU118]
gi|418633753|ref|ZP_13196159.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU129]
gi|420175420|ref|ZP_14681858.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM061]
gi|420176687|ref|ZP_14683094.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM057]
gi|420189999|ref|ZP_14695947.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM037]
gi|420193116|ref|ZP_14698971.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM023]
gi|420199742|ref|ZP_14705413.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM031]
gi|420203756|ref|ZP_14709317.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM015]
gi|242234435|gb|EES36747.1| ribosome-associated inhibitor protein Y [Staphylococcus epidermidis
W23144]
gi|319401171|gb|EFV89386.1| ribosomal subunit interface protein [Staphylococcus epidermidis
FRI909]
gi|374821661|gb|EHR85713.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU118]
gi|374838700|gb|EHS02238.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU129]
gi|394243355|gb|EJD88721.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM061]
gi|394252253|gb|EJD97291.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM057]
gi|394259292|gb|EJE04150.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM037]
gi|394260239|gb|EJE05054.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM023]
gi|394271492|gb|EJE15985.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM031]
gi|394274338|gb|EJE18759.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM015]
Length = 189
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
N AD E D EI+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTANNQADDIESENDI----EIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRETDG 170
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 171 TSIVYRRKDGKYGLI 185
>gi|225027508|ref|ZP_03716700.1| hypothetical protein EUBHAL_01764 [Eubacterium hallii DSM 3353]
gi|224955147|gb|EEG36356.1| ribosomal subunit interface protein [Eubacterium hallii DSM 3353]
Length = 175
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ II GKNLE+T+ +K V +K K + K EV V LSV+ K +I +
Sbjct: 1 MRYIIYGKNLEVTEGLKQAVHDKFSK-LEKFFTPETEVQVTLSVQ-----KDNQIVEATI 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ K ++R E ++ +Y SID+ +++R +RK K K S +G+ FN
Sbjct: 55 PM---KGTILRVEPNSTDMYVSIDMAVDLLERMIRKYKTKISKYGKGELKFN-------- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ E+ D++ I + K F + P+ V EA Q+E + H+F+ FRN ET E
Sbjct: 104 -------DEFMEEDVDNHETVTITKSKRFAIKPMDVEEACVQMELLGHNFFVFRNAETFE 156
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 157 VNVVYKRKDKTYGLIEPE 174
>gi|392971363|ref|ZP_10336759.1| ribosome-associated protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|403047240|ref|ZP_10902708.1| ribosome-associated protein Y [Staphylococcus sp. OJ82]
gi|392510755|emb|CCI60031.1| ribosome-associated protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|402762774|gb|EJX16868.1| ribosome-associated protein Y [Staphylococcus sp. OJ82]
Length = 188
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 111/196 (56%), Gaps = 14/196 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+NL +TD ++N++EEK+GK + ++ + V + V+ + + EV
Sbjct: 2 IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNDVPNAIAHVKVKTYQNSAA----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAEE + +YA IDL++ ++R++RK K + + NR + +
Sbjct: 57 TI-PLKNVTLRAEERHDDLYAGIDLINGKLERQVRKYKTR-------VNRKNRNRGEQEA 108
Query: 219 TQVVENDADVQSEEEDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ +++ + + DDN D EI+R K F + P+ EA+ Q++ + HDF+ F + ET
Sbjct: 109 FASLPQESEAEEIQNDDNESDIEIIRSKNFSLKPMDSEEAVLQMDLLGHDFFIFTDRETD 168
Query: 278 EINIVYKRKAGGYGVI 293
+IVYKR+ G YG+I
Sbjct: 169 GTSIVYKRRDGKYGLI 184
>gi|227824557|ref|ZP_03989389.1| sigma-54 modulation protein [Acidaminococcus sp. D21]
gi|226905056|gb|EEH90974.1| sigma-54 modulation protein [Acidaminococcus sp. D21]
Length = 180
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 26/197 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE--VTL 160
++GKNLE+T +K++VE+KV + + K V GE RI R + V +
Sbjct: 5 VRGKNLEVTPALKDYVEKKV-ETITKQFKTV-----------GEITAVMRIERNKHIVEI 52
Query: 161 FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
G+V RA+E +E +YASID I+R++ K K + R F V PV+
Sbjct: 53 TVPASGIVLRAQEGSENMYASIDNCVEKIERQIHKYKTRLMK--RKYNNFRDAAV-PPVS 109
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
DV+ D F ++ R K + M P+ V EAI Q+ ++HDF+ F N+ET +
Sbjct: 110 ------GDVEEASADGEF--KVARTKTYAMRPMNVQEAIMQMNMLNHDFFVFFNDETESM 161
Query: 280 NIVYKRKAGGYGVIIPK 296
+VY+RKAG YG+I P+
Sbjct: 162 AVVYRRKAGDYGLINPE 178
>gi|417892400|ref|ZP_12536450.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21201]
gi|341857862|gb|EGS98672.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21201]
Length = 193
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 18/200 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLK- 213
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
++E V+NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQETQETQVDNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 168
Query: 274 EETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 169 RETDGTSIVYRRKDGKYGLI 188
>gi|347750937|ref|YP_004858502.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Bacillus
coagulans 36D1]
gi|347583455|gb|AEO99721.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
coagulans 36D1]
Length = 186
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 14/192 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP-RIRRCEVTLF 161
I+G+N+E+T +++++E+KV K + V D ++V+ P + + E+T+
Sbjct: 5 IRGENIEVTPAIRDYIEKKVNKL---DRYFVETPDTSVNVK---LKVNPDKTSKVEITI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
V+RAEE E +YA+IDL++ ++R++RK K K + R KG R P T +
Sbjct: 58 PMPQVVLRAEETNEDMYAAIDLIADKLERQIRKHKTKVNRKLRE-KGSTRELFTTPDTGL 116
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
E A +EED +IVR K F + P+ EA+ Q+ + H+F+ + + ET NI
Sbjct: 117 KEKQA---RKEEDSEL--QIVRTKHFNLKPMDSEEAVLQMNLLGHNFFIYTDAETNHTNI 171
Query: 282 VYKRKAGGYGVI 293
VY+RK G YG+I
Sbjct: 172 VYRRKDGKYGLI 183
>gi|335045046|ref|ZP_08538069.1| ribosomal subunit interface protein [Oribacterium sp. oral taxon
108 str. F0425]
gi|363896221|ref|ZP_09322775.1| hypothetical protein HMPREF9624_00012 [Oribacterium sp. ACB7]
gi|333758832|gb|EGL36389.1| ribosomal subunit interface protein [Oribacterium sp. oral taxon
108 str. F0425]
gi|361961229|gb|EHL14447.1| hypothetical protein HMPREF9624_00012 [Oribacterium sp. ACB7]
Length = 175
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 44/207 (21%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I G+ + LT+ +KN VE+K+GK + K +V LS + +++ EV
Sbjct: 1 MKFSITGRTISLTEGLKNMVEKKLGK-LDKFFQADTPCNVTLSTQKD-------LQKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E +Y SIDLV +++R++RK K+K RH
Sbjct: 53 TI-PVKGSVIRAEESTEDMYQSIDLVVDVLERQIRKYKDKLV--ARH------------- 96
Query: 219 TQVVENDADVQSEEEDDNFVD----------EIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
QS F++ +IVR K ++ P+T EA Q+E + H+F
Sbjct: 97 ----------QSSSFTPEFLEEQESYDEEEIKIVRTKQIDLKPMTPEEACLQMELLGHNF 146
Query: 269 YGFRNEETGEINIVYKRKAGGYGVIIP 295
+ F N +TG++N+VYKRKA YG+I P
Sbjct: 147 FVFLNGDTGKVNVVYKRKAKSYGLIEP 173
>gi|392955447|ref|ZP_10320978.1| Ribosome-associated factor Y [Bacillus macauensis ZFHKF-1]
gi|391878374|gb|EIT86963.1| Ribosome-associated factor Y [Bacillus macauensis ZFHKF-1]
Length = 187
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 27/201 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--VRLSVRGGEFGKGPRIRRCEVTL 160
I+G+N+E+T ++ +VE+KV K + ++ + D V L V + + EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKVAK-LQRYFNETPNTDAHVNLKVYNND-------QSVEVTI 56
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
++RAEE +YA+IDLV ++R++RK K K + + G + +
Sbjct: 57 -PMTGLLLRAEESHTDMYAAIDLVIEKLERQIRKHKTKVNRRAKQNGG---------IHE 106
Query: 221 VVENDAD-----VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
++ N AD V EEED+ F +IVR K F++ P+ EAI Q++ + H F+ + + E
Sbjct: 107 IIANSADATATAVIEEEEDEAF--QIVREKRFDLKPMDTEEAILQMDLLGHSFFVYNHAE 164
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
TG N+VYKRK G YG+I P+
Sbjct: 165 TGTTNVVYKRKDGRYGLIGPE 185
>gi|357056767|ref|ZP_09117796.1| hypothetical protein HMPREF9467_04768 [Clostridium clostridioforme
2_1_49FAA]
gi|355379606|gb|EHG26762.1| hypothetical protein HMPREF9467_04768 [Clostridium clostridioforme
2_1_49FAA]
Length = 176
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 108/195 (55%), Gaps = 25/195 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLV-REVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I G+N+E+T +K VE+K+GK L+H EV V LS + ++ EVT+
Sbjct: 5 ITGRNIEVTPGLKAAVEKKIGK--LEHFFTPDTEVIVALSAQKDR-------QKIEVTIP 55
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K + +RAEE + +Y SIDLV II+R++R+ ++K D + F++
Sbjct: 56 VKGN-TIRAEESSSDMYVSIDLVEEIIERQIRRYRKKLIDKKQAAISFSQ---------- 104
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
A ++ E+E + +IV+ K F + P EA Q+E + H+FY F N +T ++N+
Sbjct: 105 ----AFIEEEDEVQDDEIQIVKTKKFAIKPAIPEEACLQMEMLGHNFYVFLNADTDQVNV 160
Query: 282 VYKRKAGGYGVIIPK 296
VYKRK G YG+I P+
Sbjct: 161 VYKRKNGTYGLIEPE 175
>gi|302872501|ref|YP_003841137.1| ribosomal subunit interface protein [Caldicellulosiruptor
obsidiansis OB47]
gi|302575360|gb|ADL43151.1| ribosomal subunit interface protein [Caldicellulosiruptor
obsidiansis OB47]
Length = 181
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 113/196 (57%), Gaps = 20/196 (10%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
II GKN+E+TD +K+ +E+K+ K + ++ L +V V LSV K I EVT+
Sbjct: 3 FIISGKNIEVTDALKDRIEKKLSK-LERYIKLDTDVHVTLSVE-----KISHI--IEVTI 54
Query: 161 FTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
HG ++RAEE + +Y++IDLV ++R++RK K K + + ++ +
Sbjct: 55 --PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIAKKEKDVESLRYM------- 105
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
+ + + EE+ FV I + K F + P++V EAI Q+ + H+F+ F N++T ++
Sbjct: 106 TYAPEEPEKEESEENGEFV--IAKTKKFPIKPMSVEEAILQMNLLGHNFFVFLNQDTDKV 163
Query: 280 NIVYKRKAGGYGVIIP 295
N+VYKRK G YG+I P
Sbjct: 164 NVVYKRKDGAYGIIEP 179
>gi|153956215|ref|YP_001396980.1| ribosome-associated protein [Clostridium kluyveri DSM 555]
gi|219856540|ref|YP_002473662.1| hypothetical protein CKR_3197 [Clostridium kluyveri NBRC 12016]
gi|146349073|gb|EDK35609.1| Predicted ribosome-associated protein [Clostridium kluyveri DSM
555]
gi|219570264|dbj|BAH08248.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 175
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 28/199 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + GKN+ LTD +KN V +K+ K + K+ + E V LSV+ +R EV
Sbjct: 1 MKITVNGKNIVLTDALKNAVRKKLSK-IDKYFNPDVEAHVTLSVQKNR-------QRIEV 52
Query: 159 TL-FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
T+ F GV+ R EE+ + +YASIDLV ++ ++RK K K +K N +R
Sbjct: 53 TIPFG---GVILRGEEENDDMYASIDLVLDKLEGQIRKQKTK------LLKRNNSESLRF 103
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ E+E DN +IV+ K F + P++ EA+ Q+E + H F+ +R+ E
Sbjct: 104 QF---------IPDEKETDNQEHKIVKTKRFAVKPMSSEEAVLQMELLGHSFFVYRDAEQ 154
Query: 277 GEINIVYKRKAGGYGVIIP 295
G++N++YKR+ G YG+I P
Sbjct: 155 GDVNVIYKRRDGNYGLIEP 173
>gi|429217935|ref|YP_007179579.1| ribosomal subunit interface protein [Deinococcus peraridilitoris
DSM 19664]
gi|429128798|gb|AFZ65813.1| ribosomal subunit interface protein [Deinococcus peraridilitoris
DSM 19664]
Length = 191
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 112/200 (56%), Gaps = 15/200 (7%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
KLI G+++++TD +K++++EK+ + + + S + + V L VR + R R EV
Sbjct: 5 KLI--GRDVDVTDALKDYLDEKLSR-LERFSDQITDAKVVLQVR--DVRDTMRRNRVEVQ 59
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVREP 217
L +G+VRAEE +YA+ID VS +++R+LRK+K K + H +++ + V P
Sbjct: 60 L-NVPNGLVRAEEHHSDMYAAIDKVSDVLERQLRKVKTKYLKRRHDNNVEDTGGM-VAAP 117
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+T ++ + EIVR K ++ P++ +A+ ++E + HDFY F N T
Sbjct: 118 LTDIIAASDEDDDAAP------EIVRQKRVDLRPMSPEDAVMEMEALHHDFYVFMNASTE 171
Query: 278 EINIVYKRKAGGYGVIIPKG 297
+VY+R+ G YG+I P
Sbjct: 172 SCAVVYRRRDGNYGLIEPNA 191
>gi|421077421|ref|ZP_15538392.1| ribosomal subunit interface protein [Pelosinus fermentans JBW45]
gi|392524809|gb|EIW47964.1| ribosomal subunit interface protein [Pelosinus fermentans JBW45]
Length = 176
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 26/199 (13%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+I++GKN+E+T +K +V ++ K + K+ + E+ L+V G R + L
Sbjct: 3 IIVRGKNIEITPALKEYVVKRASK-ITKYFDTLGEITAILAVEKG---------RHIIEL 52
Query: 161 FTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+G ++R EE +Y SIDLV I++++ K K K S R+KV
Sbjct: 53 TVPVNGMILRGEEATADMYTSIDLVVDKIEKQIEKYKTKIS---------RRMKVGAFKG 103
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
++V A + EE +V+ K F + P+ + EAI Q+ V+HDFY F N ET E+
Sbjct: 104 ELVAATAAPEVEEL------HVVKTKRFAVKPMDIEEAILQMNLVNHDFYVFSNSETEEV 157
Query: 280 NIVYKRKAGGYGVIIPKGN 298
N+VY+RK G YG+I P N
Sbjct: 158 NVVYRRKDGRYGLIEPDFN 176
>gi|222150751|ref|YP_002559904.1| ribosomal subunit interface protein [Macrococcus caseolyticus
JCSC5402]
gi|222119873|dbj|BAH17208.1| ribosomal subunit interface protein homolog [Macrococcus
caseolyticus JCSC5402]
Length = 186
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 108/196 (55%), Gaps = 26/196 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G N+ +TD ++N++EEK+ K + ++ V E + + ++ + GK + EVT+
Sbjct: 6 IHGDNITVTDAIRNYIEEKLSK-LERYFTNVPEANAHVKIKTYQDGKS----KVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K +RAEE +YA+++L+ ++R++RK H NR K RE + V
Sbjct: 60 LKDVTLRAEERHNDLYAAVNLIVEKLERQIRK----------HKTKVNR-KFRE---KGV 105
Query: 223 ENDA-----DVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ND + EEE + + EI+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 106 KNDIFPVLPGTEPEEEKGDEI-EIIRSKQFALKPMDAEEAVLQMNMLGHDFFIFNDRETN 164
Query: 278 EINIVYKRKAGGYGVI 293
E NIVYKRK G YG+I
Sbjct: 165 ETNIVYKRKDGKYGLI 180
>gi|27467452|ref|NP_764089.1| hypothetical protein SE0534 [Staphylococcus epidermidis ATCC 12228]
gi|57866379|ref|YP_188012.1| ribosomal subunit interface protein [Staphylococcus epidermidis
RP62A]
gi|251810186|ref|ZP_04824659.1| ribosome-associated inhibitor protein Y [Staphylococcus epidermidis
BCM-HMP0060]
gi|282875667|ref|ZP_06284538.1| ribosomal subunit interface protein [Staphylococcus epidermidis
SK135]
gi|293368214|ref|ZP_06614843.1| ribosomal subunit interface protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417647670|ref|ZP_12297504.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU144]
gi|417656302|ref|ZP_12305989.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU028]
gi|417658365|ref|ZP_12307999.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU045]
gi|417910205|ref|ZP_12553932.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU037]
gi|417911703|ref|ZP_12555403.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU105]
gi|417914175|ref|ZP_12557828.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU109]
gi|418326016|ref|ZP_12937212.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU071]
gi|418411277|ref|ZP_12984545.1| ribosomal subunit interface protein [Staphylococcus epidermidis
BVS058A4]
gi|418605507|ref|ZP_13168830.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU041]
gi|418608456|ref|ZP_13171651.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU057]
gi|418608767|ref|ZP_13171949.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU065]
gi|418611174|ref|ZP_13174269.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU117]
gi|418618001|ref|ZP_13180885.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU120]
gi|418622543|ref|ZP_13185288.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU123]
gi|418623655|ref|ZP_13186357.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU125]
gi|418625668|ref|ZP_13188310.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU126]
gi|418629726|ref|ZP_13192222.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU127]
gi|418665868|ref|ZP_13227305.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU081]
gi|419768251|ref|ZP_14294383.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-250]
gi|419771166|ref|ZP_14297226.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-K]
gi|420162886|ref|ZP_14669641.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM095]
gi|420166740|ref|ZP_14673421.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM088]
gi|420167328|ref|ZP_14673989.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM087]
gi|420171419|ref|ZP_14677961.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM070]
gi|420172082|ref|ZP_14678597.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM067]
gi|420182476|ref|ZP_14688612.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM049]
gi|420185953|ref|ZP_14692029.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM040]
gi|420187929|ref|ZP_14693944.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM039]
gi|420197769|ref|ZP_14703490.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM020]
gi|420201250|ref|ZP_14706875.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM018]
gi|420206817|ref|ZP_14712322.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM008]
gi|420208224|ref|ZP_14713694.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM003]
gi|420213595|ref|ZP_14718901.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH05005]
gi|420216603|ref|ZP_14721807.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH05001]
gi|420219571|ref|ZP_14724586.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH04008]
gi|420222339|ref|ZP_14727260.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH08001]
gi|420225265|ref|ZP_14730099.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH06004]
gi|420226661|ref|ZP_14731440.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH05003]
gi|420228981|ref|ZP_14733692.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH04003]
gi|420231338|ref|ZP_14735990.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH051668]
gi|420233977|ref|ZP_14738551.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH051475]
gi|421607648|ref|ZP_16048886.1| ribosomal subunit interface protein [Staphylococcus epidermidis
AU12-03]
gi|81675199|sp|Q5HQX7.1|Y419_STAEQ RecName: Full=Uncharacterized protein SERP0419
gi|81843991|sp|Q8CTF2.1|Y534_STAES RecName: Full=Uncharacterized protein SE_0534
gi|27314995|gb|AAO04131.1|AE016745_230 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637037|gb|AAW53825.1| ribosomal subunit interface protein [Staphylococcus epidermidis
RP62A]
gi|251806238|gb|EES58895.1| ribosome-associated inhibitor protein Y [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295694|gb|EFA88217.1| ribosomal subunit interface protein [Staphylococcus epidermidis
SK135]
gi|291317637|gb|EFE58054.1| ribosomal subunit interface protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329723283|gb|EGG59813.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU144]
gi|329736753|gb|EGG73018.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU028]
gi|329737992|gb|EGG74216.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU045]
gi|341651042|gb|EGS74849.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU037]
gi|341652214|gb|EGS76003.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU105]
gi|341653259|gb|EGS77030.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU109]
gi|365226927|gb|EHM68138.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU071]
gi|374401355|gb|EHQ72429.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU057]
gi|374402271|gb|EHQ73304.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU041]
gi|374407985|gb|EHQ78829.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU081]
gi|374409946|gb|EHQ80715.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU065]
gi|374817064|gb|EHR81254.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU120]
gi|374824069|gb|EHR88051.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU117]
gi|374826299|gb|EHR90198.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU123]
gi|374829965|gb|EHR93756.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU125]
gi|374833257|gb|EHR96952.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU127]
gi|374835185|gb|EHR98808.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU126]
gi|383360462|gb|EID37858.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-250]
gi|383362137|gb|EID39494.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-K]
gi|394233113|gb|EJD78723.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM088]
gi|394235883|gb|EJD81433.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM095]
gi|394238065|gb|EJD83549.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM070]
gi|394238957|gb|EJD84414.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM087]
gi|394243553|gb|EJD88915.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM067]
gi|394250021|gb|EJD95223.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM049]
gi|394253045|gb|EJD98061.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM040]
gi|394255571|gb|EJE00520.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM039]
gi|394265355|gb|EJE10012.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM020]
gi|394273156|gb|EJE17591.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM018]
gi|394276920|gb|EJE21253.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM008]
gi|394282098|gb|EJE26310.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM003]
gi|394285171|gb|EJE29255.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH05005]
gi|394288829|gb|EJE32729.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH04008]
gi|394289391|gb|EJE33275.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH08001]
gi|394291630|gb|EJE35425.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH05001]
gi|394293820|gb|EJE37522.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH06004]
gi|394298277|gb|EJE41854.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH05003]
gi|394299664|gb|EJE43199.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH04003]
gi|394302904|gb|EJE46338.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH051668]
gi|394304670|gb|EJE48066.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH051475]
gi|406656699|gb|EKC83100.1| ribosomal subunit interface protein [Staphylococcus epidermidis
AU12-03]
gi|410892821|gb|EKS40612.1| ribosomal subunit interface protein [Staphylococcus epidermidis
BVS058A4]
Length = 189
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
N AD E D EI+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTTNNHADDIESENDI----EIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRETDG 170
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 171 TSIVYRRKDGKYGLI 185
>gi|392374253|ref|YP_003206086.1| protein DR_1082 [Candidatus Methylomirabilis oxyfera]
gi|258591946|emb|CBE68251.1| Protein DR_1082 [Candidatus Methylomirabilis oxyfera]
Length = 180
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 21/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I +NLE+T+ ++++ EEK+ + + K + + V LSV K +I EV
Sbjct: 1 MQITITTRNLEITEPLRHYAEEKITR-LQKFVNQITSAHVVLSVE-----KHRQI--AEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRHMKGFNRLKVREP 217
TL ++H +R EE + +Y++IDLV+ I+R++ + KEK +H GR G R E
Sbjct: 53 TLHVREH-TIRGEESSTDLYSAIDLVADKIERQILRYKEKIVEHSGR---GSGRSLSPEE 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ A+ + ED IV+ K F M PL+ EA Q+ + H+F+ FRN T
Sbjct: 109 I-----GPAESEPFSEDG---PRIVKTKQFAMKPLSPDEAAMQMSLLGHNFFVFRNARTQ 160
Query: 278 EINIVYKRKAGGYGVIIPKG 297
E+N++Y+R+ G YG+I P G
Sbjct: 161 EVNVLYRRRDGDYGLIEPVG 180
>gi|420212401|ref|ZP_14717752.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM001]
gi|394279835|gb|EJE24132.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM001]
Length = 189
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVALRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
N AD E D EI+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTTNNHADDIESENDI----EIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRETDG 170
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 171 TSIVYRRKDGKYGLI 185
>gi|325264725|ref|ZP_08131454.1| ribosomal subunit interface protein [Clostridium sp. D5]
gi|324030017|gb|EGB91303.1| ribosomal subunit interface protein [Clostridium sp. D5]
Length = 185
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 110/202 (54%), Gaps = 23/202 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+++T +K+ +E K+GK + ++ E+ V LSV ++ EV
Sbjct: 1 MKFIISGKNIDVTPGLKDTIEHKLGK-LERYFTPETEIIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK----ESDHGRHMKGFNRLKV 214
T+ K + ++R+E+ + +Y SIDLV +I+R+LRK K K H G + K
Sbjct: 53 TIPVKGN-IIRSEQTSNDMYVSIDLVEEVIERQLRKYKNKLVAKSQGHPTSSAGGSNFK- 110
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ E++ +++E IVR K F + P+ +A Q++ V H F+ F N
Sbjct: 111 ----KEFFESEDSTPTDDEI-----RIVRTKRFGIKPMYPEDACIQMDLVGHSFFVFCNA 161
Query: 275 ETGEINIVYKRKAGGYGVIIPK 296
ET E+N+VYKRK G +G+I P+
Sbjct: 162 ETDEVNVVYKRKDGSFGLIEPE 183
>gi|73663273|ref|YP_302054.1| ribosome-associated protein Y [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123641963|sp|Q49VV1.1|Y1964_STAS1 RecName: Full=Uncharacterized protein SSP1964
gi|72495788|dbj|BAE19109.1| putative ribosome-associated protein Y [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 190
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 113/198 (57%), Gaps = 16/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+NL +TD ++N++EEK+GK + ++ + V + V+ + + EV
Sbjct: 2 IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNDVPNATAHVKVKTYQNSAT----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR---HMKGFNRLKVR 215
T+ KK +RAEE + +YA IDL+++ ++R++RK K + + R + F L
Sbjct: 57 TIPLKK-VTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRGEQEAFASLPEE 115
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+ ++ +ND E E DN + EI+R K F + P+ EA+ Q++ + HDF+ F + E
Sbjct: 116 KEAVEI-QND-----ENEADNEI-EIIRAKNFSLKPMDSEEAVLQMDLLGHDFFIFTDRE 168
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKRK G YG+I
Sbjct: 169 TDGTSIVYKRKDGKYGLI 186
>gi|319891754|ref|YP_004148629.1| ribosomal subunit interface protein [Staphylococcus
pseudintermedius HKU10-03]
gi|386319906|ref|YP_006016069.1| ribosomal subunit interface protein [Staphylococcus
pseudintermedius ED99]
gi|317161450|gb|ADV04993.1| Ribosomal subunit interface protein [Staphylococcus
pseudintermedius HKU10-03]
gi|323465077|gb|ADX77230.1| ribosomal subunit interface protein [Staphylococcus
pseudintermedius ED99]
Length = 186
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 103/195 (52%), Gaps = 21/195 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G NL +TD ++N++EEK+GK + ++ V + V+ + + EVT+
Sbjct: 6 IHGDNLTITDAIRNYIEEKIGK-LERYFTNVPNATAHVKVKTYQNSST----KIEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNRLKVREPV 218
K+ +RAEE + +YA IDL+++ ++R++RK K K D G F ++ EP
Sbjct: 60 LKNVTLRAEERHDDLYAGIDLINNKLERQVRKYKTRVNRKNRDRGYEEDVFTEVEATEPE 119
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ +D+ EI+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 120 VEQEATASDI-----------EIIRSKTFSLKPMDSEEAVLQMNLLGHDFFVFNDRETDG 168
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 169 TSIVYRRKDGKYGLI 183
>gi|288904719|ref|YP_003429940.1| Ribosome-associated protein Y [Streptococcus gallolyticus UCN34]
gi|288731444|emb|CBI12996.1| Ribosome-associated protein Y [Streptococcus gallolyticus UCN34]
Length = 182
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 113/195 (57%), Gaps = 17/195 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++N+VE K+GK + K+ H + +D R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTDAIRNYVESKLGK-IEKYFHAEQGLDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K + R + P
Sbjct: 57 TILVDSI-TLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIAKKYRE---------KLPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+Q+ ++ + + EE V ++VR K + P+ + EA+ Q++ + HDF+ + + E G
Sbjct: 107 SQIFTSEFEAEPVEE--GPVVKVVRTKHVSLKPMDIDEALLQMDLLGHDFFIYTDAEDGV 164
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G+I
Sbjct: 165 TNVLYRREDGELGLI 179
>gi|18311154|ref|NP_563088.1| 30S ribosomal protein S30 [Clostridium perfringens str. 13]
gi|18145837|dbj|BAB81878.1| 30S ribosomal protein S30AE family [Clostridium perfringens str.
13]
Length = 179
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 110/198 (55%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + KN+ELT+ +K+ VE+K+ K + K+ E LSV K +I V
Sbjct: 1 MKVTVHAKNIELTNALKDCVEKKISK-LSKYFEPGVEAKATLSVE-----KNKQI----V 50
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ +G++ R EE + +Y SIDLV I+R++RK K + S R+ R +P
Sbjct: 51 EIMIPFNGILLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRY--DSLRFAHIDP 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ D++ E+E +IV+ K F++ P+ EA+ Q+E + HDF+ F++ ET
Sbjct: 109 I-------EDMKEEKEA-----KIVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPETN 156
Query: 278 EINIVYKRKAGGYGVIIP 295
++N+VYKRK G YG+I P
Sbjct: 157 QLNVVYKRKDGNYGLIEP 174
>gi|403068170|ref|ZP_10909502.1| hypothetical protein ONdio_01079 [Oceanobacillus sp. Ndiop]
Length = 186
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 28/200 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+NLE+T +K++VE+K+GK + +V V LSV E +R EVT+
Sbjct: 5 IRGENLEVTGAIKDYVEKKIGKLERYFDNAPASDVHVNLSVYNDE-------QRIEVTI- 56
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PV 218
+ ++R+E +YA++DL ++R++RK K K NR K+++ P
Sbjct: 57 PMTNLLLRSEVQHVDLYAAVDLAVDKLERQIRKHKTK----------INR-KIKQNGSPK 105
Query: 219 TQVVEND---ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
E + + V E++ D+ EIVR K F + P+ EAI Q++ + H+F+ F N+E
Sbjct: 106 HMFAEMEKLASTVAVEDKTDDL--EIVRTKRFNLKPMDSEEAILQMDMLGHEFFVFTNDE 163
Query: 276 TGEINIVYKRKAGGYGVIIP 295
+GE N+VY+R+ G YG+I P
Sbjct: 164 SGETNVVYRRRDGRYGLIEP 183
>gi|294501811|ref|YP_003565511.1| sigma 54 modulation protein / S30EA ribosomal protein [Bacillus
megaterium QM B1551]
gi|295707160|ref|YP_003600235.1| sigma-54 modulation protein / S30EA ribosomal protein [Bacillus
megaterium DSM 319]
gi|384044354|ref|YP_005492371.1| Ribosome-associated factor Y [Bacillus megaterium WSH-002]
gi|294351748|gb|ADE72077.1| sigma 54 modulation protein / S30EA ribosomal protein [Bacillus
megaterium QM B1551]
gi|294804819|gb|ADF41885.1| sigma 54 modulation protein / S30EA ribosomal protein [Bacillus
megaterium DSM 319]
gi|345442045|gb|AEN87062.1| Ribosome-associated factor Y [Bacillus megaterium WSH-002]
Length = 183
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 106/194 (54%), Gaps = 17/194 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T ++ +VE+K+GK +V+V L V + ++ EVT+
Sbjct: 5 IRGENIEVTPAIREYVEKKLGKLERYFDETPTADVNVNLKVYNND-------QKIEVTI- 56
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
V+RAEE +YA++DLV ++R++RK K K + R KG + +
Sbjct: 57 PMNDLVLRAEETHSDLYAAVDLVLDKLERQIRKHKTKVNRKMRE-KGAEKY-----LFAA 110
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+E++A+V E+D E+VR K F + P+ EAI Q+ + H F+ F N ET N+
Sbjct: 111 LESEANVAVATEEDEL--ELVRTKRFNLKPMDSEEAILQMNMLGHSFFVFTNAETNITNV 168
Query: 282 VYKRKAGGYGVIIP 295
VY+RK G YG+I P
Sbjct: 169 VYRRKDGRYGLIEP 182
>gi|406837852|ref|ZP_11097446.1| Ribosome-associated factor Y [Lactobacillus vini DSM 20605]
Length = 184
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--VDVRLSVRGGEFGKGPRIRRC 156
+K I+G+N+E+T ++ ++++K+ K + K+ V L V + K
Sbjct: 2 LKYSIRGENIEVTAAIRTYIQKKL-KKLEKYFEDTSSSTAHVNLKVYSDKTAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +YAS+DLV+ ++R++RK K K + R KGF L+
Sbjct: 55 EVTI-PLPYLVLRAEETSPDMYASVDLVTDKLERQIRKYKTKINRKSRE-KGFKGLET-- 110
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+A Q+EE+ D D IVR K F + P+ EAI Q++ + HDF+ + + ET
Sbjct: 111 -------ANAPAQNEEKADKKFD-IVRTKRFSLKPMDSEEAILQMDMLGHDFFIYEDAET 162
Query: 277 GEINIVYKRKAGGYGVI 293
INIVY+R G YG+I
Sbjct: 163 NGINIVYRRNDGRYGLI 179
>gi|225376502|ref|ZP_03753723.1| hypothetical protein ROSEINA2194_02144 [Roseburia inulinivorans DSM
16841]
gi|225211674|gb|EEG94028.1| hypothetical protein ROSEINA2194_02144 [Roseburia inulinivorans DSM
16841]
Length = 176
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 109/198 (55%), Gaps = 23/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I G+N+ELT+ +K VE+K+ K + K+ EV+V LSV ++ EV
Sbjct: 1 MRIKITGRNIELTEGLKAAVEDKLNK-LEKYFTPDTEVNVTLSVEKER-------QKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +R+E+ + +Y SIDLV +I+R+L+K + K L ++
Sbjct: 53 TI-PMKGSYIRSEQVSSDMYVSIDLVEEVIERQLKKYRTK-------------LVTKQQN 98
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
V + + EDD + +I+R K F+M P+ +A ++E + HDFY F N ET +
Sbjct: 99 AAAVFKQDFLDEKSEDDEEI-KIIRTKKFDMKPMYPEDACVEMELLGHDFYVFINAETED 157
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 158 VNVVYKRKGNTYGLIEPE 175
>gi|354585139|ref|ZP_09004029.1| ribosomal subunit interface protein [Paenibacillus lactis 154]
gi|353189159|gb|EHB54671.1| ribosomal subunit interface protein [Paenibacillus lactis 154]
Length = 187
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 25/198 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL--VREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+ +E+TD +K++V++K+ + + K+ E V LSV G + EVT+
Sbjct: 5 IRGQQIEVTDALKDYVDKKLSR-LDKYFEAPPTSEGYVTLSVVRG-------LHTVEVTI 56
Query: 161 FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
GVV RAE+ ++ +YASID V ++R++RK K K + R G L
Sbjct: 57 --PLTGVVLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKIRQEGGLKTL------- 107
Query: 220 QVVENDADV--QSEEEDDNFVD--EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
V N A Q+E E D + D E+VR K F M P+ V EAI Q+ V H+F+ F N +
Sbjct: 108 -VAGNGAATATQTEVEQDEYEDHYEVVRTKRFTMKPMDVEEAILQMNMVGHNFFVFSNID 166
Query: 276 TGEINIVYKRKAGGYGVI 293
T E+N+VYKR G YG+I
Sbjct: 167 TQEVNVVYKRNDGKYGLI 184
>gi|358053702|ref|ZP_09147426.1| ribosomal subunit interface protein [Staphylococcus simiae CCM
7213]
gi|357256807|gb|EHJ07131.1| ribosomal subunit interface protein [Staphylococcus simiae CCM
7213]
Length = 187
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 108/195 (55%), Gaps = 14/195 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAEE + +YA IDL+++ ++R++RK K + + R +R V
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSR-----DRGDQDVFV 110
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
++ E AD +E DDN + EI+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 111 AELQEAPAD--NESSDDNDI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDG 167
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 168 TSIVYRRKDGKYGLI 182
>gi|357038235|ref|ZP_09100033.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum gibsoniae DSM 7213]
gi|355359810|gb|EHG07570.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum gibsoniae DSM 7213]
Length = 175
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 108/198 (54%), Gaps = 26/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K++++G+N+++TD +K++VE++VGK + K +E V L V G + EV
Sbjct: 1 MKVLVRGRNVDVTDALKDYVEKRVGK-LDKFLDGAKEATVILVVEGDA-------HKVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ F ++R EE +Y+SIDL+ +++++ K K K NR +V
Sbjct: 53 TVPFNGM--ILRGEEATGDMYSSIDLIVDKLEKQIEKYKGK----------LNRRRVASE 100
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
E Q +DD+ ++V+ K F + P+ V EA+ Q+ + H F+ F N ET
Sbjct: 101 QKAYAE-----QPRFQDDDDGMQVVKTKRFAIKPMPVDEAVMQMNLLGHSFFVFSNAETE 155
Query: 278 EINIVYKRKAGGYGVIIP 295
++N+VYKRK G YG+I P
Sbjct: 156 QVNVVYKRKDGKYGLIEP 173
>gi|240144450|ref|ZP_04743051.1| ribosomal subunit interface protein [Roseburia intestinalis L1-82]
gi|257203560|gb|EEV01845.1| ribosomal subunit interface protein [Roseburia intestinalis L1-82]
gi|291535662|emb|CBL08774.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Roseburia
intestinalis M50/1]
gi|291540929|emb|CBL14040.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Roseburia
intestinalis XB6B4]
gi|356668609|gb|AET35505.1| ribosomal subunit interface protein [uncultured bacterium]
Length = 176
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 111/198 (56%), Gaps = 23/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I G+N+ELTD +K+ VE+K+ K + K+ +V V LSV ++ EV
Sbjct: 1 MRIKITGRNIELTDGIKDAVEDKLNK-LEKYFTPDTDVYVTLSVEKER-------QKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +R+E+ + +Y SIDLV +I+R+L+K + K + ++
Sbjct: 53 TI-PMKGNYIRSEQVSNDMYVSIDLVEEVIERQLKKYRTK------------LVTKQQSA 99
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
V + D + + +DD + +I+R K F+M P+ +A Q+E + HDF+ F N ET +
Sbjct: 100 ASVFKQDF-LDAASDDDEEI-KIIRSKKFDMKPMYPEDACVQMELLGHDFFVFINAETED 157
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 158 VNVVYKRKGNTYGLIEPE 175
>gi|306830722|ref|ZP_07463887.1| ribosomal subunit interface protein [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|306832899|ref|ZP_07466032.1| ribosomal subunit interface protein [Streptococcus bovis ATCC
700338]
gi|336063759|ref|YP_004558618.1| putative sigma-54 modulation protein [Streptococcus pasteurianus
ATCC 43144]
gi|304424974|gb|EFM28107.1| ribosomal subunit interface protein [Streptococcus bovis ATCC
700338]
gi|304427230|gb|EFM30337.1| ribosomal subunit interface protein [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|334281959|dbj|BAK29532.1| putative sigma-54 modulation protein [Streptococcus pasteurianus
ATCC 43144]
Length = 182
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 113/195 (57%), Gaps = 17/195 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++N+VE K+GK + K+ H + +D R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTDAIRNYVESKLGK-IEKYFHAEQGLDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K + R + P
Sbjct: 57 TILVDSI-TLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIAKKHRE---------KLPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+Q+ ++ + + EE V ++VR K + P+ + EA+ Q++ + HDF+ + + E G
Sbjct: 107 SQIFTSEFEAEPVEE--GPVVKVVRTKHVSLKPMDIDEALLQMDLLGHDFFIYTDAEDGV 164
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G+I
Sbjct: 165 TNVLYRREDGELGLI 179
>gi|443630928|ref|ZP_21115109.1| hypothetical protein BSI_01800 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443348733|gb|ELS62789.1| hypothetical protein BSI_01800 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 189
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 107/202 (52%), Gaps = 28/202 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK H V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVEKKIGKLERYFDHSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP---- 217
+R+E E +Y +IDL ++ ++R++RK H NR K RE
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRK----------HKTKVNR-KFREQGSPK 106
Query: 218 --VTQVVENDAD--VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ +++D D VQ E E+D +D IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 107 YLLANGLDSDTDIAVQDEIEEDESLD-IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTN 165
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
ET N+VY+R G YG+I P
Sbjct: 166 AETNLTNVVYRRNDGKYGLIEP 187
>gi|110803848|ref|YP_699447.1| ribosomal protein S30AE familyprotein [Clostridium perfringens
SM101]
gi|110684349|gb|ABG87719.1| ribosomal subunit interface protein [Clostridium perfringens SM101]
Length = 179
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 110/198 (55%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + KN+ELT+ +K+ VE+K+ K + K+ E LSV K +I V
Sbjct: 1 MKVTVHAKNIELTNALKDCVEKKISK-LSKYFEPGVEAKATLSVE-----KNKQI----V 50
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ +G++ R EE + +Y SIDLV I+R++RK K + S R+ R +P
Sbjct: 51 EVMIPFNGILLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRY--DSLRFAHIDP 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ D++ E+E +IV+ K F++ P+ EA+ Q+E + HDF+ F++ ET
Sbjct: 109 I-------EDMKEEKEA-----KIVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPETN 156
Query: 278 EINIVYKRKAGGYGVIIP 295
++N+VYKRK G YG+I P
Sbjct: 157 QLNVVYKRKDGNYGLIEP 174
>gi|386360199|ref|YP_006058444.1| ribosomal subunit interface protein [Thermus thermophilus JL-18]
gi|383509226|gb|AFH38658.1| ribosomal subunit interface protein [Thermus thermophilus JL-18]
Length = 186
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 114/204 (55%), Gaps = 23/204 (11%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR- 154
++ KLI G+NLE+TD ++++VE+K+ + + ++ V LS+ G P +
Sbjct: 1 MNIYKLI--GRNLEITDAIRDYVEKKLAR-LDRYQDGELMAKVVLSLAGS-----PHVEK 52
Query: 155 --RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNR 211
R E+ + G+VR EE+ +YA+ID ++ ++++ +E+ RH +G
Sbjct: 53 KARAEIQV-DLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERRYVGKRHSYQG--- 108
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
P +V + +A + EEE+ +IVR+K FEM P+ EA Q+E + H F+ F
Sbjct: 109 ----PPPPEVRDLEALRKPEEEEGP---KIVRVKRFEMKPMDPEEAAFQMEALGHSFFVF 161
Query: 272 RNEETGEINIVYKRKAGGYGVIIP 295
RN +T EIN++Y+RK G YG+I P
Sbjct: 162 RNAKTDEINVIYRRKDGNYGLIEP 185
>gi|404417310|ref|ZP_10999112.1| ribosomal subunit interface protein [Staphylococcus arlettae
CVD059]
gi|403490323|gb|EJY95866.1| ribosomal subunit interface protein [Staphylococcus arlettae
CVD059]
Length = 189
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 111/192 (57%), Gaps = 14/192 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+NL +TD ++N++E+K+GK + ++ + V + V+ + + EVT+
Sbjct: 6 IHGENLTITDAIRNYIEDKIGK-LERYFNNVPNAIAHVKVKTYQNSAT----KIEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE + +YA IDL+++ ++R++RK K + + R KG +E ++V
Sbjct: 60 LKNVTLRAEERHDDLYAGIDLINNKLERQVRKYKTRVNRKSRD-KG-----DQEVFAEIV 113
Query: 223 E-NDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
E N AD + +N EI+R K F + P+ EA+ Q++ + HDF+ F + ET +I
Sbjct: 114 EDNKADALDDTSQENDF-EIIRSKQFSLKPMDSEEAVLQMDLLGHDFFIFTDRETDGTSI 172
Query: 282 VYKRKAGGYGVI 293
VYKRK G YG+I
Sbjct: 173 VYKRKDGKYGLI 184
>gi|171778163|ref|ZP_02919420.1| hypothetical protein STRINF_00256 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704780|ref|YP_005203239.1| ribosomal subunit interface protein [Streptococcus infantarius
subsp. infantarius CJ18]
gi|171283145|gb|EDT48569.1| ribosomal subunit interface protein [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gi|374681479|gb|AEZ61768.1| ribosomal subunit interface protein [Streptococcus infantarius
subsp. infantarius CJ18]
Length = 182
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 114/198 (57%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++N+VE K+GK + K+ + +E+D R++++ + + EV
Sbjct: 2 IKYSVRGENIEVTDAIRNYVESKLGK-IEKYFNAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K + R + P
Sbjct: 57 TILVNSI-TLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIAKKHRE---------KVPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+Q+ ++ ++E D+ +VR K + P+ + EA+ Q++ + HDF+ + + E G
Sbjct: 107 SQIFT--SEFEAEPVDEGPAVNVVRTKHVSLKPMDLDEALLQMDLLGHDFFIYTDAEDGV 164
Query: 279 INIVYKRKAGGYGVIIPK 296
NI+Y+R+ G G+I K
Sbjct: 165 TNILYRREDGELGLIEAK 182
>gi|312135787|ref|YP_004003125.1| ribosomal subunit interface protein [Caldicellulosiruptor
owensensis OL]
gi|311775838|gb|ADQ05325.1| ribosomal subunit interface protein [Caldicellulosiruptor
owensensis OL]
Length = 180
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 111/196 (56%), Gaps = 21/196 (10%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
II GKN+E+TD +K+ +E+K+ K + ++ L +V V LSV K I EVT+
Sbjct: 3 FIISGKNIEVTDALKDRIEKKLSK-LERYIKLNTDVHVTLSVE-----KISHI--VEVTI 54
Query: 161 FTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
HG ++RAEE + +Y++IDLV ++R++RK K K + + ++ R P
Sbjct: 55 --PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIAKKEKDVESL-RYMTYAPEE 111
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
+ EE+ FV I + K F + P++V EAI Q+ + H+F+ F N++T ++
Sbjct: 112 PE-------EESEENGEFV--IAKTKKFPIKPMSVEEAILQMNLLGHNFFVFLNQDTDKV 162
Query: 280 NIVYKRKAGGYGVIIP 295
N+VYKR G YG+I P
Sbjct: 163 NVVYKRNDGAYGLIEP 178
>gi|118586404|ref|ZP_01543852.1| ribosomal subunit interface protein [Oenococcus oeni ATCC BAA-1163]
gi|421186048|ref|ZP_15643444.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB418]
gi|118433166|gb|EAV39884.1| ribosomal subunit interface protein [Oenococcus oeni ATCC BAA-1163]
gi|399968244|gb|EJO02698.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB418]
Length = 190
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 105/194 (54%), Gaps = 21/194 (10%)
Query: 103 IQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
I+G+N+ TD + N+++ EK+ + + ++ + ++VR + + EVT
Sbjct: 6 IRGENMSTTDAINNYIKLRLEKLNNYIDQKNNPIAHINVR--------KYNEKTFKIEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ + +RAEE Y ++DLVS+ + R++RK K + + R +GF + E +
Sbjct: 58 I-PLPYLTLRAEETQSDFYNAVDLVSAKLLRQIRKFKTRVNRKSRE-RGFKGIDFNEAID 115
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
V S+ +D +D ++R K + P+ + EA+ Q+E +DHDF+ F N +T ++
Sbjct: 116 PV-------PSDTNEDKKID-VIRRKTLSLKPMDIEEAVLQMEMLDHDFFLFLNSDTNQL 167
Query: 280 NIVYKRKAGGYGVI 293
+IVYKR G YG+I
Sbjct: 168 DIVYKRDDGKYGLI 181
>gi|28210085|ref|NP_781029.1| SSU ribosomal protein S30P [Clostridium tetani E88]
gi|28202521|gb|AAO34966.1| SSU ribosomal protein S30P [Clostridium tetani E88]
Length = 176
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 33/202 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ + GKN+E+T+ ++N VE+K+ K + K+ E V LSV K +I EV
Sbjct: 1 MRITVTGKNIEITNALRNVVEKKLEK-LDKYFKPDVEAQVTLSVE-----KNRQI--IEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
T+ +GV+ R EE E +YASIDLV ++R++RK K K + HG ++
Sbjct: 53 TI--PFNGVILRGEEANEDMYASIDLVIDKLERQIRKQKTKLQKRMHGDSLR-------- 102
Query: 216 EPVTQVVENDADVQSEEEDDNFVDE--IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
Q + + E D F +E IV+ K F + P++ EA+ Q+E + H+F+ F +
Sbjct: 103 ---FQFI-------PDYEGDKFKEESKIVKTKRFAIKPMSSEEAVLQMELIGHNFFVFES 152
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
+TGE+N+VYKRK G YG+I P
Sbjct: 153 ADTGEVNVVYKRKDGNYGLIEP 174
>gi|374997885|ref|YP_004973384.1| ribosome-associated protein [Desulfosporosinus orientis DSM 765]
gi|357216251|gb|AET70869.1| ribosome-associated protein Y (PSrp-1) [Desulfosporosinus orientis
DSM 765]
Length = 176
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 106/195 (54%), Gaps = 25/195 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GK++ELTD +K +V ++VGK + K+S +V V L V R EVT
Sbjct: 5 IRGKHIELTDALKEYVMKRVGK-LAKYSDEFMDVQVTLLVERDR-------HRVEVT--A 54
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+G++ R EE+ E +Y+SID+V ++R++ K + + + R ++V
Sbjct: 55 PLNGIILRGEEETEDMYSSIDMVVEKLERQIDKYRTRINKRMR--------------SKV 100
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+++ Q E + +EIVR K F P++V EAI Q+ + H F+ F N E+ E+N+
Sbjct: 101 LKDHDPKQPAEGHEELREEIVRNKKFSAKPMSVQEAIMQMNLIGHSFFVFTNAESQEMNV 160
Query: 282 VYKRKAGGYGVIIPK 296
VY R G YG++ P+
Sbjct: 161 VYVRNNGDYGLLQPQ 175
>gi|257784786|ref|YP_003180003.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Atopobium
parvulum DSM 20469]
gi|257473293|gb|ACV51412.1| sigma 54 modulation protein/ribosomal protein S30EA [Atopobium
parvulum DSM 20469]
Length = 196
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 12/199 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
V + I G+ + +++ ++ HV++K+G A+ DV L V P + EV
Sbjct: 2 VDIKISGRKVSISEALRAHVDQKIGDALKVFDITPMSCDVVLRVDKNP--SNPDRKTTEV 59
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV-REP 217
T+F + + V ++ +YA+ID + + R+LRK K K + HMK + + +E
Sbjct: 60 TVFVRNNVVRVTAS-SDDMYAAIDEAADKVSRQLRKYKTKVVERRHHMKSERGIALTQED 118
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ ++E + +E+ DD ++VR K+ ++ P+T EA+ Q + + HDFY F N TG
Sbjct: 119 LANLIE----IPAEDLDD----QLVREKYVDLEPMTEEEALVQTDLLGHDFYVFVNSSTG 170
Query: 278 EINIVYKRKAGGYGVIIPK 296
N++Y RK GGYG+I PK
Sbjct: 171 LTNVIYHRKNGGYGIIKPK 189
>gi|227529546|ref|ZP_03959595.1| ribosome-associated inhibitor protein Y [Lactobacillus vaginalis
ATCC 49540]
gi|227350631|gb|EEJ40922.1| ribosome-associated inhibitor protein Y [Lactobacillus vaginalis
ATCC 49540]
Length = 189
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 112/205 (54%), Gaps = 21/205 (10%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAV-LKHSHLVREVDVRLSVRGGEFG 148
+ G ++ +K I+G+N+E+TD+++++V +++ K ++ V L V
Sbjct: 2 LELKGEITMLKFNIRGENIEVTDSIRDYVVKRINKLQKFFEDNVEATAHVNLKVYPN--- 58
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
R + EVT+ + +RAEE + +Y S+DLV+ ++R++RK K K + R KG
Sbjct: 59 ---RTYKVEVTI-PLPYLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KG 113
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
F L + V D D +S+++ +IVR K + P+ EA+ Q++ + HDF
Sbjct: 114 FKSL-------EFVPTDDDAESQDDL-----KIVRTKQISLKPMDPEEAVLQMDMLGHDF 161
Query: 269 YGFRNEETGEINIVYKRKAGGYGVI 293
+ F++ ET +IVY+RK G YG+I
Sbjct: 162 FVFQDAETDGTSIVYRRKDGRYGLI 186
>gi|46199231|ref|YP_004898.1| ribosomal associated protein [Thermus thermophilus HB27]
gi|55981263|ref|YP_144560.1| ribosomal subunit interface protein [Thermus thermophilus HB8]
gi|381190789|ref|ZP_09898305.1| ribosomal subunit interface protein [Thermus sp. RL]
gi|384431475|ref|YP_005640835.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermus
thermophilus SG0.5JP17-16]
gi|46196856|gb|AAS81271.1| putative ribosomal associated protein [Thermus thermophilus HB27]
gi|55772676|dbj|BAD71117.1| ribosomal subunit interface protein [Thermus thermophilus HB8]
gi|333966943|gb|AEG33708.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermus
thermophilus SG0.5JP17-16]
gi|380451357|gb|EIA38965.1| ribosomal subunit interface protein [Thermus sp. RL]
Length = 186
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 113/204 (55%), Gaps = 23/204 (11%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR- 154
++ KLI G+NLE+TD ++++VE+K+ + + ++ V LS+ G P +
Sbjct: 1 MNIYKLI--GRNLEITDAIRDYVEKKLAR-LDRYQDGELMAKVVLSLAGS-----PHVEK 52
Query: 155 --RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNR 211
R E+ + G+VR EE+ +YA+ID ++ ++++ +E+ RH +G
Sbjct: 53 KARAEIQV-DLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERRYVGKRHSYQG--- 108
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
P +V + +A + EEE+ IVR+K FEM P+ EA Q+E + H F+ F
Sbjct: 109 ----PPPPEVRDLEALRKPEEEEGP---RIVRVKRFEMKPMDPEEAAFQMEALGHSFFVF 161
Query: 272 RNEETGEINIVYKRKAGGYGVIIP 295
RN +T EIN++Y+RK G YG+I P
Sbjct: 162 RNAKTDEINVIYRRKDGNYGLIEP 185
>gi|289551388|ref|YP_003472292.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
HKU09-01]
gi|385784990|ref|YP_005761163.1| putative S30EA family ribosomal protein [Staphylococcus lugdunensis
N920143]
gi|418415772|ref|ZP_12988975.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418636851|ref|ZP_13199189.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
VCU139]
gi|289180919|gb|ADC88164.1| Ribosomal subunit interface protein [Staphylococcus lugdunensis
HKU09-01]
gi|339895246|emb|CCB54569.1| putative S30EA family ribosomal protein [Staphylococcus lugdunensis
N920143]
gi|374840412|gb|EHS03906.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
VCU139]
gi|410873630|gb|EKS21564.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 190
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 30/205 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL---VREVDVRLSVRGGEFGKGPRIRR 155
++ I G NL +TD ++N++E+K+GK +++ V V V+ +
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGKLERYFNNVPNAVAHVKVKTYANSA--------TK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNR 211
EVT+ K+ +RAEE + +YA+IDLV+ ++R++RK K K DHG
Sbjct: 54 IEVTI-PLKNVTLRAEERHDDLYAAIDLVNDKLERQVRKYKTRVNRKNRDHGDQEVFVAE 112
Query: 212 LKVREPV---TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
+ P +V ND+D+ EI+R K F + P+ EA+ Q+ + HDF
Sbjct: 113 VAEATPEPSELEVETNDSDI-----------EIIRSKHFSLKPMDSEEAVLQMNLLGHDF 161
Query: 269 YGFRNEETGEINIVYKRKAGGYGVI 293
+ F + ET +IVY+RK G YG+I
Sbjct: 162 FVFADRETEGTSIVYRRKDGKYGLI 186
>gi|422346839|ref|ZP_16427753.1| ribosomal subunit interface protein [Clostridium perfringens
WAL-14572]
gi|373225672|gb|EHP48003.1| ribosomal subunit interface protein [Clostridium perfringens
WAL-14572]
Length = 185
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 110/200 (55%), Gaps = 25/200 (12%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K+ + KN+ELT+ +K+ VE+K+ K + K+ E LSV K +I
Sbjct: 5 DDMKVTVHAKNIELTNALKDCVEKKISK-LSKYFEPGVEAKATLSVE-----KNKQI--- 55
Query: 157 EVTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
+ + +G++ R EE + +Y SIDLV I+R++RK K + S R+ R
Sbjct: 56 -IEVMIPFNGILLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRY--DSLRFAHI 112
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+P+ D++ E+E +IV+ K F++ P+ EA+ Q+E + HDF+ F++ E
Sbjct: 113 DPI-------EDMKEEKEA-----KIVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPE 160
Query: 276 TGEINIVYKRKAGGYGVIIP 295
T ++N+VYKRK G YG+I P
Sbjct: 161 TNQLNVVYKRKDGNYGLIEP 180
>gi|325977640|ref|YP_004287356.1| ribosomal subunit interface protein [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|386337161|ref|YP_006033330.1| putative sigma-54 modulation protein [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
gi|325177568|emb|CBZ47612.1| ribosomal subunit interface protein [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|334279797|dbj|BAK27371.1| putative sigma-54 modulation protein [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
Length = 182
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 112/195 (57%), Gaps = 17/195 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++N+VE K+GK + K+ H + +D R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTDAIRNYVESKLGK-IEKYFHAEQGLDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K + R + P
Sbjct: 57 TILVDSI-TLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIAKKHRE---------KLPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+Q+ ++ + + EE ++VR K + P+ + EA+ Q++ + HDF+ + + E G
Sbjct: 107 SQIFTSEFEAEPVEEGPAV--KVVRTKHVSLKPMDIDEALLQMDLLGHDFFIYTDAEDGV 164
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G+I
Sbjct: 165 TNVLYRREDGELGLI 179
>gi|312621632|ref|YP_004023245.1| sigma 54 modulation protein/ribosomal protein s30ea
[Caldicellulosiruptor kronotskyensis 2002]
gi|312202099|gb|ADQ45426.1| sigma 54 modulation protein/ribosomal protein S30EA
[Caldicellulosiruptor kronotskyensis 2002]
Length = 181
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 113/198 (57%), Gaps = 20/198 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+E+TD +K VE+K+ K + ++ L +V V LSV K I EV
Sbjct: 1 MNFIISGKNIEVTDALKERVEKKLSK-LERYIKLNTDVHVTLSVE-----KISHI--VEV 52
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HG ++RAEE + +Y++IDLV ++R++RK K K + R K E
Sbjct: 53 TI--PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIA---------KRAKDAES 101
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + + + E +++N +I + K F + P++V EAI Q+ + H+F+ F N++T
Sbjct: 102 LRYMTFELEEPEKEVQEENSEFKIAKTKRFPIKPMSVEEAILQMNLLGHNFFVFLNQDTD 161
Query: 278 EINIVYKRKAGGYGVIIP 295
++N+VYKR G YG+I P
Sbjct: 162 KVNVVYKRNDGAYGLIEP 179
>gi|110799719|ref|YP_696851.1| ribosomal subunit interface protein [Clostridium perfringens ATCC
13124]
gi|168205591|ref|ZP_02631596.1| ribosomal subunit interface protein [Clostridium perfringens E str.
JGS1987]
gi|168213724|ref|ZP_02639349.1| ribosomal subunit interface protein [Clostridium perfringens CPE
str. F4969]
gi|168215801|ref|ZP_02641426.1| ribosomal subunit interface protein [Clostridium perfringens NCTC
8239]
gi|169344213|ref|ZP_02865195.1| ribosomal subunit interface protein [Clostridium perfringens C str.
JGS1495]
gi|182623997|ref|ZP_02951785.1| ribosomal subunit interface protein [Clostridium perfringens D str.
JGS1721]
gi|422875086|ref|ZP_16921571.1| ribosomal subunit interface protein [Clostridium perfringens F262]
gi|110674366|gb|ABG83353.1| ribosomal subunit interface protein [Clostridium perfringens ATCC
13124]
gi|169297672|gb|EDS79772.1| ribosomal subunit interface protein [Clostridium perfringens C str.
JGS1495]
gi|170662953|gb|EDT15636.1| ribosomal subunit interface protein [Clostridium perfringens E str.
JGS1987]
gi|170714764|gb|EDT26946.1| ribosomal subunit interface protein [Clostridium perfringens CPE
str. F4969]
gi|177910890|gb|EDT73244.1| ribosomal subunit interface protein [Clostridium perfringens D str.
JGS1721]
gi|182381981|gb|EDT79460.1| ribosomal subunit interface protein [Clostridium perfringens NCTC
8239]
gi|380304081|gb|EIA16374.1| ribosomal subunit interface protein [Clostridium perfringens F262]
Length = 179
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 110/198 (55%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + KN+ELT+ +K+ VE+K+ K + K+ E LSV K +I +
Sbjct: 1 MKVTVHAKNIELTNALKDCVEKKISK-LSKYFEPGVEAKATLSVE-----KNKQI----I 50
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ +G++ R EE + +Y SIDLV I+R++RK K + S R+ R +P
Sbjct: 51 EVMIPFNGILLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRY--DSLRFAHIDP 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ D++ E+E +IV+ K F++ P+ EA+ Q+E + HDF+ F++ ET
Sbjct: 109 I-------EDMKEEKEA-----KIVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPETN 156
Query: 278 EINIVYKRKAGGYGVIIP 295
++N+VYKRK G YG+I P
Sbjct: 157 QLNVVYKRKDGNYGLIEP 174
>gi|254555777|ref|YP_003062194.1| ribosomal protein S30EA [Lactobacillus plantarum JDM1]
gi|300767560|ref|ZP_07077470.1| ribosomal subunit interface protein [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308179752|ref|YP_003923880.1| ribosomal protein S30EA [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380031728|ref|YP_004888719.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
plantarum WCFS1]
gi|392947893|ref|ZP_10313514.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
pentosus KCA1]
gi|418274367|ref|ZP_12889865.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
plantarum subsp. plantarum NC8]
gi|448820324|ref|YP_007413486.1| Sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
plantarum ZJ316]
gi|254044704|gb|ACT61497.1| ribosomal protein S30EA [Lactobacillus plantarum JDM1]
gi|300494545|gb|EFK29703.1| ribosomal subunit interface protein [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308045243|gb|ADN97786.1| ribosomal protein S30EA [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|339637512|emb|CCC16444.1| ribosomal protein S30EA [Lactobacillus pentosus IG1]
gi|342240971|emb|CCC78205.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
plantarum WCFS1]
gi|376009933|gb|EHS83259.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
plantarum subsp. plantarum NC8]
gi|392436868|gb|EIW14771.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
pentosus KCA1]
gi|448273821|gb|AGE38340.1| Sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
plantarum ZJ316]
Length = 188
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 105/195 (53%), Gaps = 22/195 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD----VRLSVRGGEFGKGPRIRRCEV 158
I+G+N+E+T ++++V+++VGK + VD V L V + K EV
Sbjct: 6 IRGENIEVTQAIRDYVQKRVGKL---QKYFDNNVDSIAHVNLKVHPDKTAK------VEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +YAS+DLV+ ++R++RK K K + R KG+ +
Sbjct: 57 TI-PLPYLVLRAEETSPDMYASVDLVTDKLERQIRKYKTKVNRKSRE-KGYKAIDFAATD 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
V D D +DD ++VR K + P+ EAI Q++ + HDF+ + + ET
Sbjct: 115 ETVAAADND-----QDDKL--DVVRTKRVALKPMDNEEAILQMDMLGHDFFIYEDAETDA 167
Query: 279 INIVYKRKAGGYGVI 293
INIVY+R G YG+I
Sbjct: 168 INIVYRRNDGRYGLI 182
>gi|15923742|ref|NP_371276.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926429|ref|NP_373962.1| hypothetical protein SA0707 [Staphylococcus aureus subsp. aureus
N315]
gi|21282443|ref|NP_645531.1| hypothetical protein MW0714 [Staphylococcus aureus subsp. aureus
MW2]
gi|49483009|ref|YP_040233.1| S30EA family ribosomal protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49485624|ref|YP_042845.1| S30EA family ribosomal protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|82750456|ref|YP_416197.1| hypothetical protein SAB0704 [Staphylococcus aureus RF122]
gi|87160033|ref|YP_493439.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194530|ref|YP_499325.1| hypothetical protein SAOUHSC_00767 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267212|ref|YP_001246155.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus JH9]
gi|150393261|ref|YP_001315936.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus JH1]
gi|151220933|ref|YP_001331755.1| sigma 54 modulation protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979080|ref|YP_001441339.1| hypothetical protein SAHV_0749 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509020|ref|YP_001574679.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|221141230|ref|ZP_03565723.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
subsp. aureus str. JKD6009]
gi|253731380|ref|ZP_04865545.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253732800|ref|ZP_04866965.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
subsp. aureus TCH130]
gi|255005543|ref|ZP_05144144.2| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257424872|ref|ZP_05601299.1| sigma 54 modulation protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427540|ref|ZP_05603939.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257430171|ref|ZP_05606555.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257432872|ref|ZP_05609232.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus E1410]
gi|257435776|ref|ZP_05611824.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M876]
gi|257794927|ref|ZP_05643906.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|258418243|ref|ZP_05682508.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258421540|ref|ZP_05684465.1| sigma 54 modulation protein [Staphylococcus aureus A9719]
gi|258423401|ref|ZP_05686292.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
A9635]
gi|258430735|ref|ZP_05688447.1| ribosomal subunit interface protein [Staphylococcus aureus A9299]
gi|258441773|ref|ZP_05691045.1| ribosomal subunit interface protein [Staphylococcus aureus A8115]
gi|258445786|ref|ZP_05693963.1| S30EA family ribosomal protein [Staphylococcus aureus A6300]
gi|258449597|ref|ZP_05697699.1| ribosomal subunit interface protein [Staphylococcus aureus A6224]
gi|258452960|ref|ZP_05700954.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus A5948]
gi|258453997|ref|ZP_05701969.1| ribosomal subunit interface protein [Staphylococcus aureus A5937]
gi|262049536|ref|ZP_06022406.1| hypothetical protein SAD30_0958 [Staphylococcus aureus D30]
gi|262052327|ref|ZP_06024530.1| hypothetical protein SA930_1053 [Staphylococcus aureus 930918-3]
gi|269202372|ref|YP_003281641.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ED98]
gi|282894521|ref|ZP_06302750.1| hypothetical protein SGAG_01870 [Staphylococcus aureus A8117]
gi|282903382|ref|ZP_06311273.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus C160]
gi|282905162|ref|ZP_06313019.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282908138|ref|ZP_06315969.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282910397|ref|ZP_06318201.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282913592|ref|ZP_06321381.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M899]
gi|282916094|ref|ZP_06323857.1| sigma-54 modulation protein [Staphylococcus aureus subsp. aureus
D139]
gi|282918545|ref|ZP_06326282.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282922049|ref|ZP_06329746.1| sigma-54 modulation protein [Staphylococcus aureus A9765]
gi|282923511|ref|ZP_06331191.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282926618|ref|ZP_06334248.1| sigma-54 modulation protein [Staphylococcus aureus A10102]
gi|283769915|ref|ZP_06342807.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus H19]
gi|283957584|ref|ZP_06375037.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus A017934/97]
gi|284023773|ref|ZP_06378171.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 132]
gi|293500637|ref|ZP_06666488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|293509585|ref|ZP_06668296.1| sigma-54 modulation protein [Staphylococcus aureus subsp. aureus
M809]
gi|293524171|ref|ZP_06670858.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M1015]
gi|294850539|ref|ZP_06791267.1| sigma-54 modulation protein [Staphylococcus aureus A9754]
gi|295406475|ref|ZP_06816281.1| sigma-54 modulation protein [Staphylococcus aureus A8819]
gi|295427330|ref|ZP_06819965.1| hypothetical protein SIAG_01865 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296275161|ref|ZP_06857668.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MR1]
gi|297208521|ref|ZP_06924950.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297245201|ref|ZP_06929075.1| sigma-54 modulation protein [Staphylococcus aureus A8796]
gi|297590316|ref|ZP_06948955.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MN8]
gi|300912613|ref|ZP_07130056.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381627|ref|ZP_07364277.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379014040|ref|YP_005290276.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VC40]
gi|379020523|ref|YP_005297185.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M013]
gi|384547034|ref|YP_005736287.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ED133]
gi|384549612|ref|YP_005738864.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus JKD6159]
gi|384861420|ref|YP_005744140.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|384864077|ref|YP_005749436.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|384868316|ref|YP_005748512.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus TCH60]
gi|384869338|ref|YP_005752052.1| hypothetical protein SAT0131_00824 [Staphylococcus aureus subsp.
aureus T0131]
gi|385781078|ref|YP_005757249.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 11819-97]
gi|386728518|ref|YP_006194901.1| ribosome-associated factor Y [Staphylococcus aureus subsp. aureus
71193]
gi|386830394|ref|YP_006237048.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|387142446|ref|YP_005730839.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus TW20]
gi|387149915|ref|YP_005741479.1| Ribosomal subunit interface protein [Staphylococcus aureus
04-02981]
gi|387602107|ref|YP_005733628.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ST398]
gi|387779887|ref|YP_005754685.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus LGA251]
gi|404478152|ref|YP_006709582.1| S30EA family ribosomal protein [Staphylococcus aureus 08BA02176]
gi|415683578|ref|ZP_11448794.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus CGS00]
gi|415689247|ref|ZP_11452646.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus CGS01]
gi|415693276|ref|ZP_11455109.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus CGS03]
gi|417650470|ref|ZP_12300241.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21189]
gi|417652414|ref|ZP_12302161.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21172]
gi|417655221|ref|ZP_12304935.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21193]
gi|417796152|ref|ZP_12443368.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21305]
gi|417798597|ref|ZP_12445757.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21310]
gi|417802480|ref|ZP_12449538.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21318]
gi|417887200|ref|ZP_12531333.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21195]
gi|417890533|ref|ZP_12534606.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21200]
gi|417900171|ref|ZP_12544066.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21259]
gi|417902346|ref|ZP_12546213.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21266]
gi|417904653|ref|ZP_12548475.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21269]
gi|418280799|ref|ZP_12893624.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21178]
gi|418283225|ref|ZP_12895979.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21202]
gi|418285708|ref|ZP_12898375.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21209]
gi|418308218|ref|ZP_12919861.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21194]
gi|418309511|ref|ZP_12921065.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21331]
gi|418313755|ref|ZP_12925240.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21334]
gi|418315287|ref|ZP_12926751.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21340]
gi|418318377|ref|ZP_12929782.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21232]
gi|418322144|ref|ZP_12933481.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VCU006]
gi|418423895|ref|ZP_12997037.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS1]
gi|418426872|ref|ZP_12999893.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS2]
gi|418429802|ref|ZP_13002728.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418432698|ref|ZP_13005491.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS4]
gi|418436413|ref|ZP_13008223.1| hypothetical protein MQI_01797 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418439310|ref|ZP_13011026.1| hypothetical protein MQK_00708 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418442288|ref|ZP_13013900.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS7]
gi|418445416|ref|ZP_13016902.1| hypothetical protein MQO_02176 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418448355|ref|ZP_13019755.1| hypothetical protein MQQ_02201 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451176|ref|ZP_13022515.1| hypothetical protein MQS_00679 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454198|ref|ZP_13025466.1| hypothetical protein MQU_01628 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457102|ref|ZP_13028312.1| hypothetical protein MQW_01802 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418560594|ref|ZP_13125107.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21252]
gi|418561304|ref|ZP_13125796.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21262]
gi|418565468|ref|ZP_13129872.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21264]
gi|418567893|ref|ZP_13132254.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21272]
gi|418569774|ref|ZP_13134088.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21283]
gi|418574161|ref|ZP_13138338.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21333]
gi|418578651|ref|ZP_13142746.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418581466|ref|ZP_13145547.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418595794|ref|ZP_13159389.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21342]
gi|418600605|ref|ZP_13164061.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21343]
gi|418601738|ref|ZP_13165154.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21345]
gi|418639416|ref|ZP_13201663.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-3]
gi|418640889|ref|ZP_13203105.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-24]
gi|418644363|ref|ZP_13206509.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-55]
gi|418647135|ref|ZP_13209214.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-88]
gi|418651026|ref|ZP_13213037.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-91]
gi|418654246|ref|ZP_13216159.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-99]
gi|418656302|ref|ZP_13218116.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-105]
gi|418659159|ref|ZP_13220849.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-111]
gi|418660933|ref|ZP_13222539.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-122]
gi|418872444|ref|ZP_13426783.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-125]
gi|418874773|ref|ZP_13429039.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418877597|ref|ZP_13431836.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418880456|ref|ZP_13434676.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418883382|ref|ZP_13437581.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418886044|ref|ZP_13440194.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418888650|ref|ZP_13442786.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418891394|ref|ZP_13445511.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418894208|ref|ZP_13448309.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418897169|ref|ZP_13451242.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418900139|ref|ZP_13454198.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418903027|ref|ZP_13457068.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418904875|ref|ZP_13458904.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418908545|ref|ZP_13462553.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418913941|ref|ZP_13467913.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418916617|ref|ZP_13470578.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418919624|ref|ZP_13473567.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418922421|ref|ZP_13476338.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418924990|ref|ZP_13478893.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418928075|ref|ZP_13481961.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418930785|ref|ZP_13484633.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418933687|ref|ZP_13487511.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418948877|ref|ZP_13501157.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-157]
gi|418950078|ref|ZP_13502286.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-160]
gi|418952694|ref|ZP_13504710.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-189]
gi|418979253|ref|ZP_13527050.1| Ribosome-associated factor Y [Staphylococcus aureus subsp. aureus
DR10]
gi|418981655|ref|ZP_13529370.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985293|ref|ZP_13532982.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|418987655|ref|ZP_13535328.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418990642|ref|ZP_13538303.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|418993465|ref|ZP_13541102.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|419775572|ref|ZP_14301511.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus CO-23]
gi|419784516|ref|ZP_14310280.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-M]
gi|421149524|ref|ZP_15609182.1| sigma 54 modulation protein [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|422744896|ref|ZP_16798851.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422746645|ref|ZP_16800576.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424775718|ref|ZP_18202709.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus CM05]
gi|424784609|ref|ZP_18211419.1| Ribosomal subunit interface protein [Staphylococcus aureus CN79]
gi|440706804|ref|ZP_20887526.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21282]
gi|440734232|ref|ZP_20913844.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443636563|ref|ZP_21120663.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21236]
gi|443640222|ref|ZP_21124213.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21196]
gi|448741990|ref|ZP_21723946.1| ribosomal subunit interface protein [Staphylococcus aureus
KT/314250]
gi|448744326|ref|ZP_21726220.1| ribosomal subunit interface protein [Staphylococcus aureus KT/Y21]
gi|81649741|sp|Q6GB78.1|Y717_STAAS RecName: Full=Uncharacterized protein SAS0717
gi|81651525|sp|Q6GIN9.1|Y806_STAAR RecName: Full=Uncharacterized protein SAR0806
gi|81704596|sp|Q7A1G5.1|Y714_STAAW RecName: Full=Uncharacterized protein MW0714
gi|81706023|sp|Q7A6R6.1|Y707_STAAN RecName: Full=Uncharacterized protein SA0707
gi|81781936|sp|Q99VM3.1|Y752_STAAM RecName: Full=Uncharacterized protein SAV0752
gi|122539988|sp|Q2G055.1|Y767_STAA8 RecName: Full=Uncharacterized protein SAOUHSC_00767
gi|123486758|sp|Q2FIN9.1|Y736_STAA3 RecName: Full=Uncharacterized protein SAUSA300_0736
gi|123547686|sp|Q2YSH7.1|Y704_STAAB RecName: Full=Uncharacterized protein SAB0704
gi|13700643|dbj|BAB41940.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14246521|dbj|BAB56914.1| putative ribosome-associated protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|21203880|dbj|BAB94579.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49241138|emb|CAG39816.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus MRSA252]
gi|49244067|emb|CAG42493.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus MSSA476]
gi|82655987|emb|CAI80392.1| conserved hypothetical protein [Staphylococcus aureus RF122]
gi|87126007|gb|ABD20521.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202088|gb|ABD29898.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740281|gb|ABQ48579.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Staphylococcus aureus subsp. aureus JH9]
gi|149945713|gb|ABR51649.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus JH1]
gi|150373733|dbj|BAF66993.1| sigma 54 modulation protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721215|dbj|BAF77632.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160367829|gb|ABX28800.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|253724905|gb|EES93634.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253729165|gb|EES97894.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
subsp. aureus TCH130]
gi|257272442|gb|EEV04565.1| sigma 54 modulation protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275733|gb|EEV07206.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257279368|gb|EEV09969.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257282287|gb|EEV12422.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus E1410]
gi|257284967|gb|EEV15086.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M876]
gi|257788899|gb|EEV27239.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|257839036|gb|EEV63515.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257842466|gb|EEV66890.1| sigma 54 modulation protein [Staphylococcus aureus A9719]
gi|257846462|gb|EEV70485.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
A9635]
gi|257849407|gb|EEV73377.1| ribosomal subunit interface protein [Staphylococcus aureus A9299]
gi|257852242|gb|EEV76169.1| ribosomal subunit interface protein [Staphylococcus aureus A8115]
gi|257855362|gb|EEV78300.1| S30EA family ribosomal protein [Staphylococcus aureus A6300]
gi|257857105|gb|EEV80004.1| ribosomal subunit interface protein [Staphylococcus aureus A6224]
gi|257859471|gb|EEV82325.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus A5948]
gi|257863862|gb|EEV86618.1| ribosomal subunit interface protein [Staphylococcus aureus A5937]
gi|259159767|gb|EEW44808.1| hypothetical protein SA930_1053 [Staphylococcus aureus 930918-3]
gi|259162372|gb|EEW46944.1| hypothetical protein SAD30_0958 [Staphylococcus aureus D30]
gi|262074662|gb|ACY10635.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ED98]
gi|269940329|emb|CBI48706.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus TW20]
gi|282314379|gb|EFB44769.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282317679|gb|EFB48051.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282320042|gb|EFB50389.1| sigma-54 modulation protein [Staphylococcus aureus subsp. aureus
D139]
gi|282322624|gb|EFB52946.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M899]
gi|282325789|gb|EFB56097.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282327803|gb|EFB58085.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282331569|gb|EFB61081.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282591511|gb|EFB96583.1| sigma-54 modulation protein [Staphylococcus aureus A10102]
gi|282593707|gb|EFB98699.1| sigma-54 modulation protein [Staphylococcus aureus A9765]
gi|282596337|gb|EFC01298.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus C160]
gi|282763234|gb|EFC03365.1| hypothetical protein SGAG_01870 [Staphylococcus aureus A8117]
gi|283460062|gb|EFC07152.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus H19]
gi|283470045|emb|CAQ49256.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ST398]
gi|283791035|gb|EFC29850.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus A017934/97]
gi|284999866|dbj|BAI67826.1| hibernation promoting factor [Staphylococcus aureus subsp. aureus]
gi|285816454|gb|ADC36941.1| Ribosomal subunit interface protein [Staphylococcus aureus
04-02981]
gi|290921134|gb|EFD98195.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M1015]
gi|291095642|gb|EFE25903.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|291467682|gb|EFF10197.1| sigma-54 modulation protein [Staphylococcus aureus subsp. aureus
M809]
gi|294822618|gb|EFG39059.1| sigma-54 modulation protein [Staphylococcus aureus A9754]
gi|294968620|gb|EFG44643.1| sigma-54 modulation protein [Staphylococcus aureus A8819]
gi|295128718|gb|EFG58349.1| hypothetical protein SIAG_01865 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296886776|gb|EFH25680.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297177872|gb|EFH37121.1| sigma-54 modulation protein [Staphylococcus aureus A8796]
gi|297576615|gb|EFH95330.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MN8]
gi|298694084|gb|ADI97306.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ED133]
gi|300886859|gb|EFK82061.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus TCH70]
gi|302332461|gb|ADL22654.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302750649|gb|ADL64826.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304339990|gb|EFM05934.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312438821|gb|ADQ77892.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus TCH60]
gi|312829244|emb|CBX34086.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315129436|gb|EFT85429.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus CGS03]
gi|315194370|gb|EFU24762.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus CGS00]
gi|315196427|gb|EFU26778.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus CGS01]
gi|320139913|gb|EFW31774.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320141996|gb|EFW33824.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329313473|gb|AEB87886.1| hypothetical protein SAT0131_00824 [Staphylococcus aureus subsp.
aureus T0131]
gi|329723825|gb|EGG60353.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21189]
gi|329724524|gb|EGG61031.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21172]
gi|329729682|gb|EGG66083.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21193]
gi|334270016|gb|EGL88424.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21305]
gi|334274480|gb|EGL92798.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21318]
gi|334275458|gb|EGL93747.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21310]
gi|341842943|gb|EGS84176.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21259]
gi|341843436|gb|EGS84663.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21266]
gi|341846559|gb|EGS87751.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21269]
gi|341854668|gb|EGS95534.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21200]
gi|341858253|gb|EGS99050.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21195]
gi|344176989|emb|CCC87453.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus LGA251]
gi|359829832|gb|AEV77810.1| Ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M013]
gi|364522067|gb|AEW64817.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 11819-97]
gi|365167370|gb|EHM58835.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21178]
gi|365168012|gb|EHM59371.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21202]
gi|365169269|gb|EHM60522.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21209]
gi|365223753|gb|EHM65028.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VCU006]
gi|365235454|gb|EHM76373.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21334]
gi|365238844|gb|EHM79672.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21331]
gi|365240806|gb|EHM81569.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21194]
gi|365243246|gb|EHM83932.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21232]
gi|365243917|gb|EHM84585.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21340]
gi|371971658|gb|EHO89055.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21252]
gi|371973397|gb|EHO90747.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21264]
gi|371977649|gb|EHO94912.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21262]
gi|371980258|gb|EHO97472.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21333]
gi|371981391|gb|EHO98572.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21272]
gi|371985380|gb|EHP02453.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21283]
gi|374362737|gb|AEZ36842.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VC40]
gi|374393412|gb|EHQ64725.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21343]
gi|374397549|gb|EHQ68758.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21345]
gi|374400402|gb|EHQ71516.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21342]
gi|375016532|gb|EHS10171.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-99]
gi|375017442|gb|EHS11056.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-3]
gi|375020086|gb|EHS13627.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-24]
gi|375025908|gb|EHS19301.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-55]
gi|375026838|gb|EHS20216.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-91]
gi|375030958|gb|EHS24253.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-88]
gi|375034024|gb|EHS27202.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-105]
gi|375036404|gb|EHS29477.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-111]
gi|375039708|gb|EHS32626.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-122]
gi|375367194|gb|EHS71162.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-125]
gi|375370384|gb|EHS74193.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-157]
gi|375376408|gb|EHS79943.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-189]
gi|375377859|gb|EHS81297.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-160]
gi|377696305|gb|EHT20661.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377696678|gb|EHT21033.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377698556|gb|EHT22904.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377705221|gb|EHT29529.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377707135|gb|EHT31429.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377707475|gb|EHT31768.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377711693|gb|EHT35922.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377716048|gb|EHT40233.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377716652|gb|EHT40834.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377719443|gb|EHT43613.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377722764|gb|EHT46889.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377727342|gb|EHT51449.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377732351|gb|EHT56402.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377732894|gb|EHT56944.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377735744|gb|EHT59774.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377737987|gb|EHT61996.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377742042|gb|EHT66027.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377746285|gb|EHT70256.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377746624|gb|EHT70594.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|377751122|gb|EHT75056.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377754160|gb|EHT78069.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377755884|gb|EHT79782.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|377757443|gb|EHT81331.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377761948|gb|EHT85817.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377766415|gb|EHT90248.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377767149|gb|EHT90962.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377771467|gb|EHT95221.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|377772113|gb|EHT95866.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|379992932|gb|EIA14381.1| Ribosome-associated factor Y [Staphylococcus aureus subsp. aureus
DR10]
gi|383363960|gb|EID41285.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-M]
gi|383970795|gb|EID86888.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus CO-23]
gi|384229811|gb|AFH69058.1| Ribosome-associated factor Y [Staphylococcus aureus subsp. aureus
71193]
gi|385195786|emb|CCG15395.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|387720233|gb|EIK08146.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387720484|gb|EIK08394.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS2]
gi|387722258|gb|EIK10083.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS1]
gi|387726882|gb|EIK14422.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS4]
gi|387729083|gb|EIK16549.1| hypothetical protein MQI_01797 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387731391|gb|EIK18699.1| hypothetical protein MQK_00708 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387737590|gb|EIK24655.1| hypothetical protein MQO_02176 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387738823|gb|EIK25840.1| hypothetical protein MQQ_02201 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387739265|gb|EIK26273.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS7]
gi|387746340|gb|EIK33072.1| hypothetical protein MQS_00679 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387747172|gb|EIK33882.1| hypothetical protein MQU_01628 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387748702|gb|EIK35371.1| hypothetical protein MQW_01802 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|394330441|gb|EJE56533.1| sigma 54 modulation protein [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|402346793|gb|EJU81869.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus CM05]
gi|404439641|gb|AFR72834.1| putative S30EA family ribosomal protein [Staphylococcus aureus
08BA02176]
gi|408423140|emb|CCJ10551.1| Sigma=54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus ST228]
gi|408425130|emb|CCJ12517.1| Sigma=54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus ST228]
gi|408427118|emb|CCJ14481.1| Sigma=54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus ST228]
gi|408429105|emb|CCJ26270.1| Sigma=54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus ST228]
gi|408431093|emb|CCJ18408.1| Uncharacterized protein SAR0806 [Staphylococcus aureus subsp.
aureus ST228]
gi|408433087|emb|CCJ20372.1| Uncharacterized protein SAR0806 [Staphylococcus aureus subsp.
aureus ST228]
gi|408435078|emb|CCJ22338.1| Uncharacterized protein SAR0806 [Staphylococcus aureus subsp.
aureus ST228]
gi|408437063|emb|CCJ24306.1| Uncharacterized protein SAR0806 [Staphylococcus aureus subsp.
aureus ST228]
gi|421957208|gb|EKU09532.1| Ribosomal subunit interface protein [Staphylococcus aureus CN79]
gi|436431260|gb|ELP28613.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436506678|gb|ELP42449.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21282]
gi|443405363|gb|ELS63966.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21196]
gi|443407427|gb|ELS65983.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21236]
gi|445547382|gb|ELY15652.1| ribosomal subunit interface protein [Staphylococcus aureus
KT/314250]
gi|445562329|gb|ELY18505.1| ribosomal subunit interface protein [Staphylococcus aureus KT/Y21]
Length = 190
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>gi|116491347|ref|YP_810891.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni PSU-1]
gi|419758551|ref|ZP_14284867.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB304]
gi|419856302|ref|ZP_14379024.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB202]
gi|419858461|ref|ZP_14381133.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184513|ref|ZP_15641935.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB318]
gi|421188116|ref|ZP_15645456.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB419]
gi|421189926|ref|ZP_15647233.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB422]
gi|421191640|ref|ZP_15648912.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB548]
gi|421192504|ref|ZP_15649759.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB553]
gi|116092072|gb|ABJ57226.1| SSU ribosomal protein S30P [Oenococcus oeni PSU-1]
gi|399904738|gb|EJN92190.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB304]
gi|399966157|gb|EJO00707.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB419]
gi|399967040|gb|EJO01531.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB318]
gi|399971344|gb|EJO05594.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB548]
gi|399971360|gb|EJO05609.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB422]
gi|399974574|gb|EJO08720.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB553]
gi|410498579|gb|EKP90028.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|410499788|gb|EKP91216.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB202]
Length = 190
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 105/194 (54%), Gaps = 21/194 (10%)
Query: 103 IQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
I+G+N+ TD + N+++ EK+ + + ++ + ++VR + + EVT
Sbjct: 6 IRGENMSTTDAINNYIKLRLEKLNNYIDQKNNPIAHINVR--------KYNEKTFKIEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ + +RAEE Y ++DLVS+ + R++RK K + + R +GF + E +
Sbjct: 58 I-PLPYLTLRAEETQSDFYNAVDLVSAKLLRQIRKFKTRVNRKSRE-RGFKGIDFNEAID 115
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
V S+ +D +D ++R K + P+ + EA+ Q+E +DHDF+ F N +T ++
Sbjct: 116 PV-------PSDTNEDKKID-VIRRKNLSLKPMDIEEAVLQMEMLDHDFFLFLNSDTNQL 167
Query: 280 NIVYKRKAGGYGVI 293
+IVYKR G YG+I
Sbjct: 168 DIVYKRDDGKYGLI 181
>gi|402574865|ref|YP_006624208.1| ribosome-associated protein [Desulfosporosinus meridiei DSM 13257]
gi|402256062|gb|AFQ46337.1| ribosome-associated protein Y (PSrp-1) [Desulfosporosinus meridiei
DSM 13257]
Length = 175
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 106/195 (54%), Gaps = 26/195 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GK++ELTD +K +V ++VGK + K+S +V V L V R EVT
Sbjct: 5 IRGKHIELTDALKEYVMKRVGK-LAKYSDEFMDVQVTLLVERDR-------HRVEVTALL 56
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+G++ R EE+ E +Y+SID+V ++R++ K + + NR ++R V +
Sbjct: 57 --NGIILRGEEETEDMYSSIDMVVEKLERQIDKYRTR----------INR-RMRTKVLK- 102
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
D D + + +EIVR K F P++V EAI Q+ V H F+ F N E+ E+N+
Sbjct: 103 ---DHDPKQSTAAEEPREEIVRHKKFSAKPMSVEEAIMQMNLVGHSFFVFTNSESQEMNV 159
Query: 282 VYKRKAGGYGVIIPK 296
VY R G YG++ P+
Sbjct: 160 VYLRNNGDYGLLQPQ 174
>gi|116492230|ref|YP_803965.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Pediococcus pentosaceus ATCC 25745]
gi|421895163|ref|ZP_16325638.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Pediococcus pentosaceus IE-3]
gi|116102380|gb|ABJ67523.1| SSU ribosomal protein S30P [Pediococcus pentosaceus ATCC 25745]
gi|385271932|emb|CCG91010.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Pediococcus pentosaceus IE-3]
Length = 184
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 110/192 (57%), Gaps = 19/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T+ ++++VE+++GK + V L V + K EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKRIGKIEKYFEQGANPKAHVNLKVYQDKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YAS+DLV+ ++R+LRK K K + R G+ +++ P +
Sbjct: 59 PLPYLVLRAEETSPDLYASVDLVTDKLERQLRKYKTKINRKSRET-GYKGVEI--PSGDI 115
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
VEN EEE F +IVR K + P+ EAI Q++ + H+F+ + + E+G ++I
Sbjct: 116 VEN------EEEASQF--DIVRTKQVSLKPMGSEEAILQMDMLGHNFFIYEDAESGSVDI 167
Query: 282 VYKRKAGGYGVI 293
VY+R+ G YG+I
Sbjct: 168 VYRRRDGRYGLI 179
>gi|429767406|ref|ZP_19299605.1| ribosomal subunit interface protein [Clostridium celatum DSM 1785]
gi|429181014|gb|EKY22209.1| ribosomal subunit interface protein [Clostridium celatum DSM 1785]
Length = 175
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 109/198 (55%), Gaps = 27/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ + GKN+++T +K VE+K+ K L R D + R + R + EV
Sbjct: 1 MRVTVIGKNIDVTPALKEIVEKKISK-------LDRYFDPEVQARATLTVQKNR-QIFEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ +GV+ R EE + +Y SIDLV + ++R++RK + K FN
Sbjct: 53 TI--PFNGVILRCEESTDDMYKSIDLVETKLERQIRKQRTKLQRRNNESLRFN------- 103
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
N ++ SEE++ N EIV++K F + P++ EAI Q+E V+H+F+ F++ +T
Sbjct: 104 ------NFDEIASEEDEHN---EIVKIKKFNIKPMSTEEAILQMELVEHNFFVFKDCDTD 154
Query: 278 EINIVYKRKAGGYGVIIP 295
+N++YKRK G YG++ P
Sbjct: 155 NVNVIYKRKDGNYGLLEP 172
>gi|418576818|ref|ZP_13140950.1| putative ribosome-associated protein Y [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379324483|gb|EHY91629.1| putative ribosome-associated protein Y [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 192
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 113/198 (57%), Gaps = 16/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+NL +TD ++N++EEK+GK + ++ + V + V+ + + EV
Sbjct: 4 IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNDVPNATAHVKVKTYQNSAT----KIEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR---HMKGFNRLKVR 215
T+ K+ +RAEE + +YA IDL+++ ++R++RK K + + R + F L
Sbjct: 59 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRGEQEAFASLPEE 117
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+ ++ +ND E E DN + EI+R K F + P+ EA+ Q++ + HDF+ F + E
Sbjct: 118 KEAVEI-QND-----ENEADNEI-EIIRAKNFSLKPMDSEEAVLQMDLLGHDFFIFTDRE 170
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKRK G YG+I
Sbjct: 171 TDGTSIVYKRKDGKYGLI 188
>gi|379795223|ref|YP_005325221.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus MSHR1132]
gi|356872213|emb|CCE58552.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus MSHR1132]
Length = 190
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 110/195 (56%), Gaps = 11/195 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E +
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRKSRD-RGDQEVFVAE-L 113
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
++ E D +E DDN + EI+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 114 QEMQETPVD--NETYDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDG 170
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 171 TSIVYRRKDGKYGLI 185
>gi|332983237|ref|YP_004464678.1| 30S ribosomal protein S30P;sigma 54 modulation protein [Mahella
australiensis 50-1 BON]
gi|332700915|gb|AEE97856.1| SSU ribosomal protein S30P;sigma 54 modulation protein [Mahella
australiensis 50-1 BON]
Length = 179
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 110/197 (55%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++II GKN+ +TD ++ V++K+GK ++ EV V +SV K I +
Sbjct: 1 MRIIISGKNIPITDALRAIVDKKLGK-FDRYFDEDTEVRVVMSVE-----KNRHIVEITI 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
L ++RAE+ ++ +Y SI+ V ++R++ K K K +++E
Sbjct: 55 PL---NGSILRAEDYSDDMYTSIERVLQKLERQIHKHKTKLEK-----------RIKEGA 100
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ E D+++E E+ D +VR K F + P+++ EAI Q+E + HDF+ F N ET E
Sbjct: 101 FKSDELLFDIETESEESEQHD-VVRTKRFALKPMSIEEAITQMELLGHDFFVFNNAETEE 159
Query: 279 INIVYKRKAGGYGVIIP 295
IN+VY+R+ GGYG+I P
Sbjct: 160 INVVYRRRDGGYGLIEP 176
>gi|418911429|ref|ZP_13465412.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377724807|gb|EHT48922.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG547]
Length = 190
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 110/200 (55%), Gaps = 21/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLS-VRGGEFGKGPRIRRCE 157
++ I G NL +TD ++N++EEK+GK +V + ++ V+ + + E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKMGKL----ERYFNDVPIAVAHVKVKTYSNSAT--KIE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLK 213
VT+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 56 VTI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQ 114
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 115 EMQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 274 EETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>gi|22536521|ref|NP_687372.1| ribosomal subunit interface protein [Streptococcus agalactiae
2603V/R]
gi|25010400|ref|NP_734795.1| ribosomal subunit interface protein [Streptococcus agalactiae
NEM316]
gi|76787963|ref|YP_329060.1| ribosomal subunit interface protein [Streptococcus agalactiae A909]
gi|76797828|ref|ZP_00780093.1| ribosomal subunit interface protein [Streptococcus agalactiae
18RS21]
gi|77406955|ref|ZP_00783974.1| ribosomal subunit interface protein [Streptococcus agalactiae H36B]
gi|77410652|ref|ZP_00787012.1| ribosomal subunit interface protein [Streptococcus agalactiae
CJB111]
gi|406708860|ref|YP_006763586.1| ribosomal subunit interface protein [Streptococcus agalactiae
GD201008-001]
gi|424050094|ref|ZP_17787644.1| ribosomal subunit interface protein [Streptococcus agalactiae
ZQ0910]
gi|22533354|gb|AAM99244.1|AE014207_5 ribosomal subunit interface protein [Streptococcus agalactiae
2603V/R]
gi|23094752|emb|CAD45971.1| unknown [Streptococcus agalactiae NEM316]
gi|76563020|gb|ABA45604.1| ribosomal subunit interface protein [Streptococcus agalactiae A909]
gi|76586842|gb|EAO63335.1| ribosomal subunit interface protein [Streptococcus agalactiae
18RS21]
gi|77163367|gb|EAO74318.1| ribosomal subunit interface protein [Streptococcus agalactiae
CJB111]
gi|77174433|gb|EAO77283.1| ribosomal subunit interface protein [Streptococcus agalactiae H36B]
gi|389648500|gb|EIM70005.1| ribosomal subunit interface protein [Streptococcus agalactiae
ZQ0910]
gi|406649745|gb|AFS45146.1| ribosomal subunit interface protein [Streptococcus agalactiae
GD201008-001]
Length = 184
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 17/200 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++ +VE K+ K V K+ + +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEAIREYVETKLSK-VEKYFNEAQELDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TILID-SITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKYRE---------KIPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+QV + + + +EE IVR K + P+ V EA+ Q+E + HDF+ + + E
Sbjct: 107 SQVFTTEFEAEPDEE--AVSQRIVRTKNVNLKPMDVEEALLQMELLGHDFFIYTDAEDNT 164
Query: 279 INIVYKRKAGGYGVIIPKGN 298
N++YKR+ G G+I KGN
Sbjct: 165 TNVLYKREDGELGLIEAKGN 184
>gi|114565806|ref|YP_752960.1| sigma 54 modulation protein/ribosomal protein S30EA [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114336741|gb|ABI67589.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 181
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 117/200 (58%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II+G+N+E+TD +K++ +++ K + K+ V+E V LS+ G + + EV
Sbjct: 1 MKFIIRGRNIEITDALKDYTTKRLSK-LEKYIDDVKEAQVALSIEGED-------HKVEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
T+ +G++ R EE ++ +Y+SID+V +++++ K K + S+ G +K
Sbjct: 53 TI--PLNGIILRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRLYRSNRGAGLK-------- 102
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+ + + ++ + D E+ + F ++VR K F + P+ V EAI Q+ + H F+ F N +
Sbjct: 103 KALAEEIKKELD--KGEKIEKF--KVVRSKRFALKPMDVEEAIMQMNLLGHSFFVFFNPQ 158
Query: 276 TGEINIVYKRKAGGYGVIIP 295
+ E+N+VYKRK G YG+I P
Sbjct: 159 SEEVNVVYKRKDGNYGLIEP 178
>gi|90962163|ref|YP_536079.1| ribosome-associated factor Y [Lactobacillus salivarius UCC118]
gi|90821357|gb|ABD99996.1| Ribosome-associated factor Y [Lactobacillus salivarius UCC118]
Length = 184
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 107/196 (54%), Gaps = 19/196 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCE 157
+K+ ++G+N+E+T ++ +VE+++ K + V L V + K E
Sbjct: 2 LKINVRGENIEVTGAIREYVEKRLAKLEKFFDNTADSTAHVNLKVYSDKTAK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KGF + P
Sbjct: 56 VTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKVNRKSRE-KGFKNFEF-AP 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V AD + E ED F EIVR K + P+ EA+ Q++ + HDF+ + + E G
Sbjct: 113 V-------ADEKEEVEDKKF--EIVRTKRLSLKPMDSEEAVLQMDMLGHDFFIYEDAENG 163
Query: 278 EINIVYKRKAGGYGVI 293
I IVY+R+ G YG+I
Sbjct: 164 GIYIVYRRRDGRYGLI 179
>gi|420195447|ref|ZP_14701239.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM021]
gi|394263242|gb|EJE07981.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM021]
Length = 189
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
N +D E D EI+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTTNNHSDDIESENDI----EIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRETDG 170
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 171 TSIVYRRKDGKYGLI 185
>gi|373463803|ref|ZP_09555385.1| ribosomal subunit interface protein [Lactobacillus kisonensis
F0435]
gi|371763817|gb|EHO52270.1| ribosomal subunit interface protein [Lactobacillus kisonensis
F0435]
Length = 195
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 112/202 (55%), Gaps = 17/202 (8%)
Query: 94 GPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGP 151
G + + I+G+N+E+T ++++VE+++ K + K+ L V L V + K
Sbjct: 4 GEIVMLMFNIRGENIEVTQAIRDYVEKRISK-LEKYFEKDLKNTAHVNLKVYSDKQAK-- 60
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
EVT+ + +RAEE + +YAS+DLV+ ++R++RK K K + R KGF
Sbjct: 61 ----VEVTI-PLPYLTLRAEEMSNDLYASVDLVTDKLERQIRKYKTKVNRKSRE-KGFKN 114
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
L+ Q AD QS+ ++++ ++VR K + P+ EAI Q++ + HDF+ +
Sbjct: 115 LEFAPTQEQ-----ADAQSDSDNESKF-QVVRTKQLALKPMDNEEAILQMDMLGHDFFIY 168
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
+ ET INIVY+R G YG+I
Sbjct: 169 EDAETSGINIVYRRNDGRYGLI 190
>gi|366163790|ref|ZP_09463545.1| sigma 54 modulation protein / 30S ribosomal protein S30P
[Acetivibrio cellulolyticus CD2]
Length = 176
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 110/198 (55%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I+ GKN+E+TD ++ +KVGK + K + E + +SV+ K +I EV
Sbjct: 1 MRFIVTGKNIEVTDALREKAIKKVGK-IEKFFNKNTEAHITMSVQ-----KNRQI--VEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K G++RA+E+ + +YASID V ++ ++R+ N+ K++
Sbjct: 53 TI-PFKGGLLRAQEENDDMYASIDKVVDSLEGQIRR---------------NKTKIQRKY 96
Query: 219 TQVVENDADVQSEEEDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + V E+ +D D ++VR K F + P+T+ EAI Q+ + H+F+ F N ET
Sbjct: 97 HESDLSFDSVNFEDHEDEVNDFKVVRSKKFSIKPMTIEEAILQMNMLGHEFFMFSNSETM 156
Query: 278 EINIVYKRKAGGYGVIIP 295
E N+VY+RK G YG+I P
Sbjct: 157 EANVVYRRKDGNYGLIEP 174
>gi|224475893|ref|YP_002633499.1| putative ribosome-associated protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|229462783|sp|P47995.2|Y400_STACT RecName: Full=Uncharacterized protein Sca_0400; AltName: Full=ORF1
gi|222420500|emb|CAL27314.1| putative ribosome-associated protein [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 188
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 27/202 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++E+KVGK + +V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKVGKL---ERYFTNVPNVNAHVKVKTYANSST--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK-------EKESDHGRHMKGFNR 211
T+ +RAEE + +YA IDL+++ ++R++RK K KES+H
Sbjct: 57 TI-PLNDVTLRAEERNDDLYAGIDLITNKLERQVRKYKTRVNRKKRKESEH--------- 106
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
EP E + + + D+ + EI+R K F + P+ EA+ Q++ + HDF+ F
Sbjct: 107 ----EPFPATPETPPETAVDHDKDDEI-EIIRSKQFSLKPMDSEEAVLQMDLLGHDFFIF 161
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
+ ET +IVY+RK G YG+I
Sbjct: 162 NDRETDGTSIVYRRKDGKYGLI 183
>gi|308071083|ref|YP_003872688.1| hypothetical protein PPE_04390 [Paenibacillus polymyxa E681]
gi|305860362|gb|ADM72150.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 186
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-IRRCE 157
+ L ++G+ +E+TD +K++V++K S L + D + G R + E
Sbjct: 1 MNLTVRGQQIEVTDALKDYVDKK-------FSRLEKYFDAPPTSDGSVTLSTTRDLHTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ V+RAE++++ +YASID V ++R++RK K K + R L V +P
Sbjct: 54 VTI-PLPGLVLRAEDESDDMYASIDAVVDKLERQIRKHKTKLNRKFRQEGSLKTLFVEDP 112
Query: 218 VTQV-VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
V V D DV+ +E E+VR K F + P+ V EAI Q+ V H+F+ F N +
Sbjct: 113 AGGVAVAEDEDVELDEL------EVVRTKRFLLKPMDVEEAILQMNMVGHNFFVFSNIDN 166
Query: 277 GEINIVYKRKAGGYGVI 293
E+N+VYKR G YG+I
Sbjct: 167 EEVNVVYKRNDGKYGLI 183
>gi|290890911|ref|ZP_06553975.1| hypothetical protein AWRIB429_1365 [Oenococcus oeni AWRIB429]
gi|421194382|ref|ZP_15651603.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB568]
gi|421196114|ref|ZP_15653305.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB576]
gi|290479310|gb|EFD87970.1| hypothetical protein AWRIB429_1365 [Oenococcus oeni AWRIB429]
gi|399978016|gb|EJO11982.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB576]
gi|399978110|gb|EJO12072.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB568]
Length = 190
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 105/194 (54%), Gaps = 21/194 (10%)
Query: 103 IQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
I+G+N+ TD + N+++ EK+ + + ++ + ++VR + + EVT
Sbjct: 6 IRGENMSTTDVINNYIKLRLEKLNNYIDQKNNPIAHINVR--------KYNEKTFKIEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ + +RAEE Y ++DLVS+ + R++RK K + + R +GF + E +
Sbjct: 58 I-PLPYLTLRAEETQSDFYNAVDLVSAKLLRQIRKFKTRVNRKSRE-RGFKGIDFNEAID 115
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
V S+ +D +D ++R K + P+ + EA+ Q+E +DHDF+ F N +T ++
Sbjct: 116 PV-------PSDTNEDKKID-VIRRKNLSLKPMDIEEAVLQMEMLDHDFFLFLNSDTNQL 167
Query: 280 NIVYKRKAGGYGVI 293
+IVYKR G YG+I
Sbjct: 168 DIVYKRDDGKYGLI 181
>gi|340750555|ref|ZP_08687395.1| sigma(54) modulation protein [Fusobacterium mortiferum ATCC 9817]
gi|340562419|gb|EEO35230.2| sigma(54) modulation protein [Fusobacterium mortiferum ATCC 9817]
Length = 200
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 23/200 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLS---VRGGEFGKGPRIRR 155
+K+ I GK L +TD +KN+ E K+G+ H ++ E+ + LS ++ G +
Sbjct: 18 MKMTIHGKQLVITDAIKNYAETKLGRVEKYHDGII-ELAINLSAVKLKTGNY------HT 70
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EV + V + DA+ +YA+ID VS +++ +L+K K+K ++ R
Sbjct: 71 AEVLAYLGGSTVKASCTDAD-LYAAIDGVSDVLEGQLKKHKDKIR---------TAVQSR 120
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EP+ + V+ D + + E++ +V++ + P+ V EAI QLE ++ F+ F N E
Sbjct: 121 EPMIRKVKYDPETNTVEKEAAV--NVVKV-YLPPKPMDVEEAILQLEILNRAFFPFTNAE 177
Query: 276 TGEINIVYKRKAGGYGVIIP 295
TGE+NIVYKRK G YG I P
Sbjct: 178 TGEMNIVYKRKDGDYGHIEP 197
>gi|163846965|ref|YP_001635009.1| ribosomal subunit interface protein [Chloroflexus aurantiacus
J-10-fl]
gi|222524786|ref|YP_002569257.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Chloroflexus sp. Y-400-fl]
gi|163668254|gb|ABY34620.1| ribosomal subunit interface protein [Chloroflexus aurantiacus
J-10-fl]
gi|222448665|gb|ACM52931.1| sigma 54 modulation protein/ribosomal protein S30EA [Chloroflexus
sp. Y-400-fl]
Length = 197
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L I+ +N +++D + H+EEK+ K + ++ H + + V V+ + + R +
Sbjct: 1 MELTIKSRNGKISDRQRAHIEEKLSK-LERYLHGITSITV--EVQHEQQRNAGEVYRVQT 57
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK----GFN--- 210
TL + HGV+ RAEE A +YA+ID V ++QR++ + K+K R + G
Sbjct: 58 TLVAE-HGVILRAEERAPDLYAAIDEVQEVLQRQIARYKDKYWRRSREQRRAPNGLTPAE 116
Query: 211 RLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
+ + E + +V SE ++R K F + P+ V +AIEQ+E + H+F+
Sbjct: 117 EVAIAEAEAAALATPTEVGSEAR-------VIRTKTFRLRPMFVDDAIEQMELLGHNFFV 169
Query: 271 FRNEETGEINIVYKRKAGGYGVIIPK 296
F++ ET +++++Y+R+ G YGVIIP+
Sbjct: 170 FQDAETMQVSVLYRRRDGNYGVIIPE 195
>gi|32307586|gb|AAP79198.1| ribosomal protein rpS22 [Bigelowiella natans]
Length = 170
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 16/156 (10%)
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
+ EVT++ K V+R + + Y+SIDLV+ ++ RKLRK KE++ G+ R
Sbjct: 15 KIEVTVYVKDSKVIRGSVSSVSEYSSIDLVTDLVNRKLRKYKERK--EGKRTASGVRTFY 72
Query: 215 REPVTQ-------VVENDADVQSEE-----EDDNFVDEI--VRMKFFEMPPLTVSEAIEQ 260
++ V+ DVQ EE E V+++ VR K F MPP+++ +A
Sbjct: 73 TNDISDSSDVEGAAVQGQDDVQQEEYSGIPEGYAPVEDVSVVRRKKFPMPPISIEDATLC 132
Query: 261 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
L+ +DHDFY FRN ET EIN+VY+R GG G+I P+
Sbjct: 133 LDYLDHDFYVFRNSETKEINVVYRRAEGGVGLIEPE 168
>gi|228930190|ref|ZP_04093199.1| Sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228829475|gb|EEM75103.1| Sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
Length = 180
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 113/196 (57%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +V +K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVGKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVN---RKLREKGSMKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + V A + + EED+ E+VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 108 LPEAV---AVLDAVEEDEL---ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|225387182|ref|ZP_03756946.1| hypothetical protein CLOSTASPAR_00934 [Clostridium asparagiforme
DSM 15981]
gi|225046730|gb|EEG56976.1| hypothetical protein CLOSTASPAR_00934 [Clostridium asparagiforme
DSM 15981]
Length = 176
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 25/194 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLV-REVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I G+N+E+T +K VE+K+GK L+H EV V LS + ++ EVT+
Sbjct: 5 ITGRNIEVTPGLKAAVEKKIGK--LEHFFTPDTEVIVALSAQKDR-------QKIEVTIP 55
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K + +RAEE + +Y SIDLV +I+R++R+ ++K D + F++
Sbjct: 56 VKGN-TIRAEESSTDMYVSIDLVEEVIERQIRRYRKKLIDKKQAALSFSQ---------- 104
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
A + EE++ IV+ K F + P EA Q+E + H+FY F N +T ++N+
Sbjct: 105 ----AFIDEEEDEQEDDIRIVKTKKFAIKPTIPEEACLQMEMLGHNFYVFLNSDTDQVNV 160
Query: 282 VYKRKAGGYGVIIP 295
VYKRK G YG+I P
Sbjct: 161 VYKRKNGTYGLIEP 174
>gi|410458994|ref|ZP_11312748.1| sigma 54 modulation protein / S30EA ribosomal protein [Bacillus
azotoformans LMG 9581]
gi|409930700|gb|EKN67695.1| sigma 54 modulation protein / S30EA ribosomal protein [Bacillus
azotoformans LMG 9581]
Length = 183
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 108/196 (55%), Gaps = 17/196 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+ +T ++ +VE+K+GK +V+V LSV E ++ E
Sbjct: 1 MKFNIRGENITVTPAIREYVEKKIGKLEKYFEQKPTSDVNVNLSVYNNE-------QKIE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + ++RAEE +YA+ DLV + ++R++RK K K + R + R E
Sbjct: 54 VTI-PMTNLLLRAEESHVDMYAAADLVVNKLERQIRKHKTKVNRKLRQAEESPRYGFAET 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V +A+ Q + D++F E+VR K F++ P+ EAI Q+ + H+F+ F N ET
Sbjct: 113 V------NANGQEDHGDEDF--EVVRNKRFDLKPMDSEEAILQMNMLGHNFFVFVNAETN 164
Query: 278 EINIVYKRKAGGYGVI 293
N+VY+R G YG+I
Sbjct: 165 STNVVYRRNDGKYGLI 180
>gi|416842072|ref|ZP_11904807.1| ribosomal subunit interface protein, partial [Staphylococcus aureus
O11]
gi|323438895|gb|EGA96630.1| ribosomal subunit interface protein [Staphylococcus aureus O11]
Length = 186
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>gi|315658894|ref|ZP_07911761.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
M23590]
gi|315496018|gb|EFU84346.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
M23590]
Length = 190
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 105/205 (51%), Gaps = 30/205 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL---VREVDVRLSVRGGEFGKGPRIRR 155
++ I G NL +TD ++N++E+K+GK +++ V V V+ +
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGKLERYFNNVPNAVAHVKVKTYANSAT--------K 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNR 211
EVT+ K+ +RAEE + +YA+IDLV+ ++R++RK K K DHG
Sbjct: 54 IEVTI-PLKNVTLRAEERHDDLYAAIDLVNDKLERQVRKYKTRVNRKNRDHGGQEVFVAE 112
Query: 212 LKVREPV---TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
+ P +V ND+D+ EI+R K F + P+ EA+ Q+ + HDF
Sbjct: 113 VAEATPEPSELEVETNDSDI-----------EIIRSKHFSLKPMDSEEAVLQMNLLGHDF 161
Query: 269 YGFRNEETGEINIVYKRKAGGYGVI 293
+ F + ET +IVY+RK G YG+I
Sbjct: 162 FVFADRETEGTSIVYRRKDGKYGLI 186
>gi|423451563|ref|ZP_17428416.1| ribosomal subunit interface protein [Bacillus cereus BAG5X1-1]
gi|423557292|ref|ZP_17533595.1| ribosomal subunit interface protein [Bacillus cereus MC67]
gi|401145271|gb|EJQ52797.1| ribosomal subunit interface protein [Bacillus cereus BAG5X1-1]
gi|401193100|gb|EJR00107.1| ribosomal subunit interface protein [Bacillus cereus MC67]
Length = 180
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 110/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T + +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALGEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSVKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
E A + + EED+ E+VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 110 -----EAVAVLDAVEEDEL---ELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|392963545|ref|ZP_10328971.1| ribosomal subunit interface protein [Pelosinus fermentans DSM
17108]
gi|392451369|gb|EIW28363.1| ribosomal subunit interface protein [Pelosinus fermentans DSM
17108]
Length = 176
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 104/199 (52%), Gaps = 26/199 (13%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+I++GKN+E+T +K +V ++ K + K+ + E+ L+V G R + L
Sbjct: 3 IIVRGKNIEITPALKEYVVKRTSK-ITKYFDTLGEITAILAVEKG---------RHIIEL 52
Query: 161 FTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+G ++R EE +Y SIDLV I++++ K K K S R+K
Sbjct: 53 TVPVNGMILRGEEATADMYTSIDLVVDKIEKQIEKYKTKIS---------RRMKAGTFKG 103
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
++V A + EE +V+ K F + P+ + EAI Q+ V+HDFY F N ET E+
Sbjct: 104 ELVAATAAPEVEEL------HVVKTKRFAVKPMDIEEAILQMNLVNHDFYVFSNSETEEV 157
Query: 280 NIVYKRKAGGYGVIIPKGN 298
N+VY+RK G YG+I P N
Sbjct: 158 NVVYRRKDGRYGLIEPDFN 176
>gi|421052303|ref|ZP_15515294.1| ribosomal subunit interface protein [Pelosinus fermentans B4]
gi|421058320|ref|ZP_15521031.1| ribosomal subunit interface protein [Pelosinus fermentans B3]
gi|421069113|ref|ZP_15530285.1| sigma 54 modulation protein/ribosomal protein S30EA [Pelosinus
fermentans A11]
gi|392443406|gb|EIW20947.1| ribosomal subunit interface protein [Pelosinus fermentans B4]
gi|392450133|gb|EIW27186.1| sigma 54 modulation protein/ribosomal protein S30EA [Pelosinus
fermentans A11]
gi|392461051|gb|EIW37282.1| ribosomal subunit interface protein [Pelosinus fermentans B3]
Length = 176
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 104/199 (52%), Gaps = 26/199 (13%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+I++GKN+E+T +K +V ++ K + K+ + E+ L+V G R + L
Sbjct: 3 IIVRGKNIEITPALKEYVVKRTNK-ITKYFDTLGEITAILAVEKG---------RHIIEL 52
Query: 161 FTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+G ++R EE +Y SIDLV I++++ K K K S R+K
Sbjct: 53 TVPVNGMILRGEEATADMYTSIDLVVDKIEKQIEKYKTKIS---------RRMKAGTFKG 103
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
++V A + EE +V+ K F + P+ + EAI Q+ V+HDFY F N ET E+
Sbjct: 104 ELVAATAAPEVEEL------HVVKTKRFAVKPMDIEEAILQMNLVNHDFYVFSNSETEEV 157
Query: 280 NIVYKRKAGGYGVIIPKGN 298
N+VY+RK G YG+I P N
Sbjct: 158 NVVYRRKDGRYGLIEPDFN 176
>gi|317501258|ref|ZP_07959462.1| ribosomal subunit interface protein [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089995|ref|ZP_08338885.1| hypothetical protein HMPREF1025_02468 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336439038|ref|ZP_08618657.1| hypothetical protein HMPREF0990_01051 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316897325|gb|EFV19392.1| ribosomal subunit interface protein [Lachnospiraceae bacterium
8_1_57FAA]
gi|330402909|gb|EGG82475.1| hypothetical protein HMPREF1025_02468 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017080|gb|EGN46850.1| hypothetical protein HMPREF0990_01051 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 185
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 106/200 (53%), Gaps = 23/200 (11%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
II GKN+E+T +K +E+K+GK + ++ E+ V LSV G ++ EVT+
Sbjct: 3 FIISGKNIEVTPGLKEAIEQKLGK-LERYFTPETEIIVTLSVEKGR-------QKIEVTI 54
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K ++R+E+ + +Y SIDLV +I+R+LRK K K + P
Sbjct: 55 -PVKGSIIRSEQTSSDMYVSIDLVEEVIERQLRKYKNKLVAKSQG----------HPTAA 103
Query: 221 V----VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
V ++ + +E D+ IVR K F + P+ +A Q+E + H F+ F N ET
Sbjct: 104 VPSGSIKKEFIESDDESSDDDEIRIVRTKKFGIKPMFPEDACIQMELLGHSFFVFSNAET 163
Query: 277 GEINIVYKRKAGGYGVIIPK 296
E+N+VYKRK G +G+I P+
Sbjct: 164 DEVNVVYKRKDGSFGLIEPE 183
>gi|366086469|ref|ZP_09452954.1| ribosomal subunit interface protein [Lactobacillus zeae KCTC 3804]
Length = 185
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 29/198 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++N+VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRNYVEKRISKLNKFFGGSVTATAH------VNLKVYPDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ V
Sbjct: 54 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDVD 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
A+ + E+DDN +VR K + P+ EAI Q++ + H+F+ F + +
Sbjct: 112 TSAP------AEPKPAEDDDNLT--VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDAD 163
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKR+ G YG+I
Sbjct: 164 TNGTSIVYKRRDGRYGLI 181
>gi|334881788|emb|CCB82694.1| ribosomal protein S30EA [Lactobacillus pentosus MP-10]
Length = 188
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 22/195 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD----VRLSVRGGEFGKGPRIRRCEV 158
++G+N+E+T ++++V+++VGK + VD V L V + K EV
Sbjct: 6 VRGENIEVTQAIRDYVQKRVGKL---QKYFDNNVDSIAHVNLKVHPDKTAK------VEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +YAS+DLV+ ++R++RK K K + R KG+ +
Sbjct: 57 TI-PLPYLVLRAEETSPDMYASVDLVTDKLERQIRKYKTKVNRKSRE-KGYKAIDFAATD 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
V D D +DD ++VR K + P+ EAI Q++ + HDF+ + + ET
Sbjct: 115 ETVAAADND-----QDDKL--DVVRTKRVALKPMDNEEAILQMDMLGHDFFIYEDAETDA 167
Query: 279 INIVYKRKAGGYGVI 293
INIVY+R G YG+I
Sbjct: 168 INIVYRRNDGRYGLI 182
>gi|302875857|ref|YP_003844490.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Clostridium cellulovorans 743B]
gi|307689290|ref|ZP_07631736.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Clostridium cellulovorans 743B]
gi|302578714|gb|ADL52726.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
cellulovorans 743B]
Length = 180
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I GKN+E+T +K VE+K+ K + K+ V LSV +++ EVT+
Sbjct: 5 ITGKNIEVTPALKEAVEKKLSK-LDKYLEKDYTAHVTLSVE-------RKLQVIEVTI-P 55
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNRLKVREPVTQ 220
K+ ++R EE E++YASIDLV ++ ++RK K K S + ++ ++ L E
Sbjct: 56 LKNVILRGEEATESMYASIDLVIDKLEGQMRKNKTKLSKQKYADSLRFYDALSKGELAAT 115
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
VE ++ +IV+ K F + P+ EA+ Q+E + H+F+ F ++ET E+N
Sbjct: 116 EVEEES-------------KIVKTKRFAIKPMNAEEAVLQMELLGHNFFVFMDDETSEVN 162
Query: 281 IVYKRKAGGYGVIIP 295
+VYKRK G +G+I P
Sbjct: 163 VVYKRKDGNFGLIEP 177
>gi|57650091|ref|YP_185689.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus COL]
gi|81694980|sp|Q5HHR8.1|Y815_STAAC RecName: Full=Uncharacterized protein SACOL0815
gi|57284277|gb|AAW36371.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus COL]
Length = 190
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFIDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>gi|348027320|ref|YP_004767125.1| ribosomal subunit interface protein [Megasphaera elsdenii DSM
20460]
gi|341823374|emb|CCC74298.1| ribosomal subunit interface protein [Megasphaera elsdenii DSM
20460]
Length = 174
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 105/199 (52%), Gaps = 35/199 (17%)
Query: 102 IIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRCEVT 159
I++GKNLE+T +K+HVE++ K + EV+V+ LSV K +I E+T
Sbjct: 4 IVRGKNLEITPALKDHVEKQEKKVT---KYFDNEVNVQALLSVE-----KDRKI--AEIT 53
Query: 160 LFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK--GFNRLKVRE 216
L K GVV R E + +YA+IDLV + R++ K K K + R MK FN V
Sbjct: 54 L--KVDGVVLRGVEANDDMYAAIDLVYDKLVRQIHKYKTKIA---RRMKKGAFNDALVEG 108
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
P ++ F E+ R+K F P+ V EAI Q+ V HDF+ F N +T
Sbjct: 109 PAVP-------------EETF--EVARVKKFAARPMDVEEAILQMNLVGHDFFVFLNSKT 153
Query: 277 GEINIVYKRKAGGYGVIIP 295
IN+VYKRK G YG+I P
Sbjct: 154 DTINVVYKRKHGKYGLIEP 172
>gi|242372986|ref|ZP_04818560.1| ribosome-associated inhibitor protein Y [Staphylococcus epidermidis
M23864:W1]
gi|242349312|gb|EES40913.1| ribosome-associated inhibitor protein Y [Staphylococcus epidermidis
M23864:W1]
Length = 191
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 107/199 (53%), Gaps = 17/199 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL---VREVDVRLSVRGGEFGKGPRIRR 155
++ I G NL +TD ++N++EEK+GK +++ V V V+ +
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNNVPNAVAHVKVKTYSNSAT--------K 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V
Sbjct: 54 IEVTI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQEVFVA 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
E E +V EE DN D EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 112 EVQEATPE---EVSGAEEPDNDSDIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDR 168
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 169 ETDGTSIVYRRKDGKYGLI 187
>gi|159036563|ref|YP_001535816.1| sigma 54 modulation protein/ribosomal protein S30EA [Salinispora
arenicola CNS-205]
gi|157915398|gb|ABV96825.1| sigma 54 modulation protein/ribosomal protein S30EA [Salinispora
arenicola CNS-205]
Length = 208
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 110/211 (52%), Gaps = 23/211 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV EK+ K + ++ H V VDV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHYRVHVAEKLAK-IERYDHKVIRVDVELF-----HERNPRQSDHCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDL-VSSIIQRKLRKIKEKESDHGRHM-----KG 208
R E+T F++ V+RAE Y+++D ++ + R R + HGRH
Sbjct: 55 RVEITCFSRG-PVMRAEACTSDFYSALDAAIARLDTRMRRAADRRRVHHGRHAPISVAAA 113
Query: 209 FNRLKVREPVTQVVEND------ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLE 262
RL V + V + +D A + EEE D+ I R K P+TV +A+ Q+E
Sbjct: 114 TARLPVTDLVAAPLSHDGATATVAAERPEEERDDQPWHIAREKVHPAEPMTVDDALFQME 173
Query: 263 NVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
V HDFY F+++E+G ++VY+R A YG+I
Sbjct: 174 LVGHDFYLFQDKESGRPSVVYRRHAYDYGII 204
>gi|15896102|ref|NP_349451.1| ribosome-associated protein [Clostridium acetobutylicum ATCC 824]
gi|337738056|ref|YP_004637503.1| ribosome-associated protein Y (PSrp-1) [Clostridium acetobutylicum
DSM 1731]
gi|384459567|ref|YP_005671987.1| Ribosome-associated protein Y (PSrp-1) [Clostridium acetobutylicum
EA 2018]
gi|15025892|gb|AAK80791.1|AE007782_5 Ribosome-associated protein Y (PSrp-1) [Clostridium acetobutylicum
ATCC 824]
gi|325510256|gb|ADZ21892.1| Ribosome-associated protein Y (PSrp-1) [Clostridium acetobutylicum
EA 2018]
gi|336292052|gb|AEI33186.1| ribosome-associated protein Y (PSrp-1) [Clostridium acetobutylicum
DSM 1731]
Length = 174
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 114/200 (57%), Gaps = 29/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KLI+ GKNLE+T+ ++ VE+++ K + K+ E V LSV K +I EV
Sbjct: 1 MKLIVSGKNLEVTEGLREAVEKQISK-LEKYFKPEVEAHVTLSVE-----KNRQI--VEV 52
Query: 159 TL-FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
T+ F +GV+ R EE +YASID+V ++R++RK K K R K +
Sbjct: 53 TIPF---NGVILRGEETNNDMYASIDIVGDKLERQVRKQKTK----------LERRKYSD 99
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ +N D EE++ EIV+ K F + P++ EA+ ++E + H+F+ F+N ++
Sbjct: 100 SLK--FQNIPDYHKEEQEP----EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDS 153
Query: 277 GEINIVYKRKAGGYGVIIPK 296
E+N+VYKRK G YG+I P+
Sbjct: 154 NEVNVVYKRKDGNYGLIEPE 173
>gi|310644314|ref|YP_003949073.1| ribosome-associated factor y [Paenibacillus polymyxa SC2]
gi|309249265|gb|ADO58832.1| Ribosome-associated factor Y [Paenibacillus polymyxa SC2]
Length = 186
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-IRRCE 157
+ L ++G+ +E+TD +K++VE+K S L + D + G R + E
Sbjct: 1 MNLTVRGQQIEVTDALKDYVEKK-------FSRLEKYFDAPPTSDGSVTLSTTRDLHTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ V+RAE++++ +YASID V ++R++RK K K + R L V +P
Sbjct: 54 VTI-PLPGLVLRAEDESDDMYASIDAVVDKLERQIRKHKTKLNRKFRQEGSLKTLFVEDP 112
Query: 218 VTQV-VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
V V D D + +E E+VR K F + P+ V EAI Q+ + H+F+ F N +
Sbjct: 113 ADGVAVAEDEDAELDEL------EVVRTKRFLLKPMDVEEAILQMNMIGHNFFVFANIDN 166
Query: 277 GEINIVYKRKAGGYGVI 293
E+N+VYKR G YG+I
Sbjct: 167 EEVNVVYKRNDGKYGLI 183
>gi|219849180|ref|YP_002463613.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Chloroflexus aggregans DSM 9485]
gi|219543439|gb|ACL25177.1| sigma 54 modulation protein/ribosomal protein S30EA [Chloroflexus
aggregans DSM 9485]
Length = 197
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 113/200 (56%), Gaps = 7/200 (3%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I+ +N ++++ + H+EEK+ K +L + + V+ + + R +
Sbjct: 1 MEFTIKSRNGKISERQREHIEEKLAKL---GRYLNGITSITVEVQHEQQRNVGEVYRVQT 57
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVRE 216
TL + HGV+ RAEE A +YA+ID V ++QR++++ K+K R ++ N L E
Sbjct: 58 TLVAE-HGVILRAEERAADLYAAIDAVQEVLQRQIQRYKDKYWRRSRELRRATNGLTPAE 116
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
V + + E + V +++R K F + P+ V +AIEQ+E + H F+ F++ ET
Sbjct: 117 EVAIAEAETEAMTAPVETEP-VAKVIRTKTFRLRPMFVDDAIEQMELLGHTFFVFQDAET 175
Query: 277 GEINIVYKRKAGGYGVIIPK 296
+I+++Y+R+ G YGVI+P+
Sbjct: 176 MQISVLYRRRDGNYGVIVPE 195
>gi|390562670|ref|ZP_10244856.1| Sigma 54 modulation protein/ribosomal protein S30EA [Nitrolancetus
hollandicus Lb]
gi|390172753|emb|CCF84168.1| Sigma 54 modulation protein/ribosomal protein S30EA [Nitrolancetus
hollandicus Lb]
Length = 196
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 20/205 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ ++I+ KN+ LTD ++ +++++V K + ++ D +L +R + G + +
Sbjct: 1 MDILIKTKNVRLTDGLREYIDKRVAKLDRLNERII---DAKLELRSEKNRSGAEEKIAQF 57
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR--- 215
T+ T K +RAEE + + A+IDL + R++++ H K F R + R
Sbjct: 58 TIATGK-TTLRAEEKNDDLRAAIDLAVDRMARQIQRFH--------HKKIFARRRQRQLT 108
Query: 216 --EPVTQVVENDADVQ---SEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
EP N A + EED+ V +VR K F++ P+ EAIEQ+E + HDF+
Sbjct: 109 APEPAPANAVNGAATELTLDLEEDEAPVSTLVRRKRFKIQPMGEDEAIEQMELLGHDFFV 168
Query: 271 FRNEETGEINIVYKRKAGGYGVIIP 295
F + + ++N++Y+RK G YG+I P
Sbjct: 169 FFSPDDAQVNVLYRRKDGQYGIIQP 193
>gi|417896608|ref|ZP_12540554.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21235]
gi|341840574|gb|EGS82077.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21235]
Length = 190
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV D DV DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV---DNDVY----DDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>gi|312126883|ref|YP_003991757.1| ribosomal subunit interface protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311776902|gb|ADQ06388.1| ribosomal subunit interface protein [Caldicellulosiruptor
hydrothermalis 108]
Length = 181
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 113/199 (56%), Gaps = 20/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+E+TD +K +E+K+ K + ++ L +V V LSV K I EV
Sbjct: 1 MNFIISGKNIEVTDALKERIEKKLSK-LERYIKLNTDVHVTLSVE-----KISHI--VEV 52
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HG ++RAEE + +Y++IDLV ++R++RK K K + R K E
Sbjct: 53 TI--PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIA---------KRAKDAES 101
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + + + + E ++N I + K F + P++V EAI Q+ + H+F+ F N++T
Sbjct: 102 LRYMTFDIEEPEKEATEENGEFRIAKTKRFPIKPMSVEEAILQMNLLGHNFFVFLNQDTD 161
Query: 278 EINIVYKRKAGGYGVIIPK 296
++N+VY+R G YG+I P+
Sbjct: 162 KVNVVYRRNDGAYGLIEPE 180
>gi|344997091|ref|YP_004799434.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Caldicellulosiruptor lactoaceticus 6A]
gi|343965310|gb|AEM74457.1| sigma 54 modulation protein/ribosomal protein S30EA
[Caldicellulosiruptor lactoaceticus 6A]
Length = 181
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 112/199 (56%), Gaps = 20/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+E+TD +K +E+K+ K + ++ L +V V LSV K I EV
Sbjct: 1 MNFIISGKNIEVTDALKERIEKKLSK-LERYIKLNTDVHVTLSVE-----KISHI--IEV 52
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HG ++RAEE + +Y++IDLV ++R++RK K K + R K E
Sbjct: 53 TI--PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIA---------KRAKDAES 101
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + + + E ++N I + K F + P++V EAI Q+ + H+F+ F N++T
Sbjct: 102 LRYMTFELEEPEKEAGEENGEFRIAKTKRFPIKPMSVEEAILQMNLLGHNFFVFLNQDTD 161
Query: 278 EINIVYKRKAGGYGVIIPK 296
++N+VYKR G YG+I P+
Sbjct: 162 KVNVVYKRNDGAYGLIEPE 180
>gi|312792715|ref|YP_004025638.1| sigma 54 modulation protein/ribosomal protein s30ea
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179855|gb|ADQ40025.1| sigma 54 modulation protein/ribosomal protein S30EA
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 181
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 113/199 (56%), Gaps = 20/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+E+TD +K +E+K+ K + ++ L +V V LSV K I EV
Sbjct: 1 MNFIISGKNIEVTDALKERIEKKLSK-LERYIKLNTDVHVTLSVE-----KISHI--IEV 52
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HG ++RAEE + +Y++IDLV ++R++RK K K + R K E
Sbjct: 53 TI--PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIA---------KRAKDAES 101
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + + + E +++N I + K F + P++V EAI Q+ + H+F+ F N++T
Sbjct: 102 LRYMTFELEEPEKEGQEENGEFRIAKTKRFPIKPMSVEEAILQMNLLGHNFFVFLNQDTD 161
Query: 278 EINIVYKRKAGGYGVIIPK 296
++N+VYKR G YG+I P+
Sbjct: 162 KVNVVYKRNDGAYGLIEPE 180
>gi|407478098|ref|YP_006791975.1| Sigma 54 modulation protein/ribosomal protein S30EA
[Exiguobacterium antarcticum B7]
gi|407062177|gb|AFS71367.1| Sigma 54 modulation protein/ribosomal protein S30EA
[Exiguobacterium antarcticum B7]
Length = 187
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 110/196 (56%), Gaps = 15/196 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSH--LVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+NL++TD +K++VE+K+ K + + V L V + ++ EVT+
Sbjct: 5 IRGENLDVTDALKDYVEKKLEKLTRYFTTPTEAQTAYVNLKVNNEK-------QKVEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
+ ++RAE+ +YA+IDLV ++R++RK K K + GR +G + E
Sbjct: 58 -PMPNLLLRAEDVNGDMYAAIDLVVDKLERQIRKHKTKINRRGRAKEG----GIGEYFKT 112
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+ +AD EED+ + E+VR K F + P+ EAI Q++ + H F+ F + ETG N
Sbjct: 113 LEGPEADAPVYEEDEAEL-ELVRTKRFTLKPMDTEEAILQMDMLGHTFFVFSDAETGNTN 171
Query: 281 IVYKRKAGGYGVIIPK 296
+VY+RK G YG+I P+
Sbjct: 172 VVYRRKDGRYGLIEPE 187
>gi|311070036|ref|YP_003974959.1| YvyD protein [Bacillus atrophaeus 1942]
gi|419821590|ref|ZP_14345183.1| YvyD protein [Bacillus atrophaeus C89]
gi|310870553|gb|ADP34028.1| YvyD [Bacillus atrophaeus 1942]
gi|388474226|gb|EIM10956.1| YvyD protein [Bacillus atrophaeus C89]
Length = 188
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 102/194 (52%), Gaps = 13/194 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK H V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVEKKIGKLERYFEHSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+R+E E +Y +IDL ++ ++R++RK K K + R L +
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTKVNRKFREQGSPKHLFTNGSAS-- 115
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
E D VQ E ++D+ EIVR K F + P+ EAI Q+ + H F+ F N ET N+
Sbjct: 116 -ETDVAVQDEIDEDS--PEIVRQKRFNLKPMDSEEAILQMNMLGHSFFVFTNAETNLTNV 172
Query: 282 VYKRKAGGYGVIIP 295
VY+R G YG+I P
Sbjct: 173 VYRRNDGKYGLIEP 186
>gi|163816072|ref|ZP_02207442.1| hypothetical protein COPEUT_02252 [Coprococcus eutactus ATCC 27759]
gi|158448882|gb|EDP25877.1| ribosomal subunit interface protein [Coprococcus eutactus ATCC
27759]
Length = 175
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 106/195 (54%), Gaps = 24/195 (12%)
Query: 102 IIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
II GKN+E+T+ ++N V++K+ K + K+ V SV ++ EVT+
Sbjct: 4 IISGKNIEVTEGLRNAVQDKLSK-LEKYFAADTGAQVTFSVEKDR-------QKIEVTIP 55
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K H ++RAE+ ++ +Y SIDLV +I+R++ K ++K D +++ N V E +
Sbjct: 56 MKGH-IIRAEQVSDDMYVSIDLVVEVIERQVTKHRKKLIDKEQNVAYLNEAFVDEDIEDD 114
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ +IVR K F + P+ +A Q++ + H+FY FRN ET E+N+
Sbjct: 115 DDI---------------KIVRTKKFAVKPMYPEDACIQMDLLGHNFYVFRNAETDEVNV 159
Query: 282 VYKRKAGGYGVIIPK 296
VYKRK YG+I P+
Sbjct: 160 VYKRKGNTYGLIEPE 174
>gi|365924323|ref|ZP_09447086.1| ribosome-associated factor Y [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420265654|ref|ZP_14768189.1| Ribosome-associated factor Y [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394427471|gb|EJF00166.1| Ribosome-associated factor Y [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 181
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 115/198 (58%), Gaps = 26/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K I+G+N+E+T+ ++++V++K+ K S+ V++++ + +
Sbjct: 2 LKYNIRGENIEVTEAIRSYVQKKLTKLEKYFEDTSNSTAHVNLKVY--------SDKTAK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAEE + +YAS+DLV+ ++R++RK K K + R KGFN V+
Sbjct: 54 VEVTI-PLPYLVLRAEETSPDMYASVDLVTDKLERQIRKHKTKINRKSRE-KGFNN-NVQ 110
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
E +ND +EE ++ F +IVR K F + P+ EA+ Q+ + HDF+ + + E
Sbjct: 111 E------KND----TEETENGF--DIVRSKHFSLKPMDSEEAVLQMNMLGHDFFIYEDAE 158
Query: 276 TGEINIVYKRKAGGYGVI 293
T +NIVY+RK G YG+I
Sbjct: 159 TDGVNIVYRRKDGRYGLI 176
>gi|418322603|ref|ZP_12933921.1| ribosomal subunit interface protein [Staphylococcus pettenkoferi
VCU012]
gi|365231319|gb|EHM72370.1| ribosomal subunit interface protein [Staphylococcus pettenkoferi
VCU012]
Length = 194
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 112/199 (56%), Gaps = 15/199 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+NL +TD ++N++EEK+GK + ++ + V + V+ + EV
Sbjct: 2 IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNNVPNATAHVKVKTYHNSAT----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL++S ++R++RK K K DHG +
Sbjct: 57 TI-PLKNVTLRAEERHDDLYAGIDLITSKLERQVRKYKTRVNRKNRDHG-----IQDVFA 110
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
P Q ++ + +++++DD EI+R K F + P+ EA+ Q+ + HDF+ FR+
Sbjct: 111 ALPDDQEIKATYNTEADKDDDEDEIEIIRSKQFSLKPMDAEEAVLQMNLLGHDFFVFRDR 170
Query: 275 ETGEINIVYKRKAGGYGVI 293
+T +IVYKRK G YG+I
Sbjct: 171 DTEGTSIVYKRKNGKYGLI 189
>gi|296330262|ref|ZP_06872743.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305676133|ref|YP_003867805.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296152530|gb|EFG93398.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305414377|gb|ADM39496.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 189
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 28/202 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK H V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTAALKDHVEKKIGKLERYFDHSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP---- 217
+R+E E +Y +IDL ++ ++R++RK H NR K RE
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRK----------HKTKVNR-KFREQGSPK 106
Query: 218 --VTQVVENDAD--VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ + +D D VQ E ED+ +D IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 107 YLLANGLGSDTDIAVQDEIEDEESLD-IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTN 165
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
ET N+VY+R G YG+I P
Sbjct: 166 AETNLTNVVYRRNDGKYGLIEP 187
>gi|311031924|ref|ZP_07710014.1| sigma 54 modulation protein / S30EA ribosomal protein [Bacillus sp.
m3-13]
Length = 186
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 107/201 (53%), Gaps = 24/201 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T ++++VE K+GK + ++ S E V L V + ++
Sbjct: 1 MKYNVRGENIEVTPAIRDYVENKIGK-IERYFDSTDNAECKVNLKVYNNQ-------QKI 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRL 212
EVT+ V+RAEE + +YA+IDLV ++R++RK + K D G FN
Sbjct: 53 EVTI-PMTGLVLRAEESHDDLYAAIDLVVDKLERQIRKHKTKVNRKLRDTGSPKYLFN-- 109
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
+V++N A EDD ++VR K + + P+ EAI Q+ + H+F+ F
Sbjct: 110 -------EVIDNGAPAHVAVEDDEDEADLVRTKRYNLKPMDSEEAILQMNLLGHNFFVFL 162
Query: 273 NEETGEINIVYKRKAGGYGVI 293
N T E N+VYKR G YG+I
Sbjct: 163 NAATNETNVVYKRNDGKYGLI 183
>gi|325291341|ref|YP_004267522.1| 30S ribosomal protein S30P;sigma 54 modulation protein
[Syntrophobotulus glycolicus DSM 8271]
gi|324966742|gb|ADY57521.1| SSU ribosomal protein S30P;sigma 54 modulation protein
[Syntrophobotulus glycolicus DSM 8271]
Length = 181
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 109/197 (55%), Gaps = 29/197 (14%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+II+GK ++TD +K++V ++V K + K S +V+V LSV+ +R EVT
Sbjct: 3 VIIRGKQFKVTDALKDYVIKRVSK-LEKFSDDFTDVNVTLSVQKER-------QRIEVT- 53
Query: 161 FTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVREPV 218
+G+ +R EE+ + +Y+SIDLV ++R++ K +++ + +K NR
Sbjct: 54 -APLNGMMIRGEEETDNMYSSIDLVVEKLERQIEKYRQRINKKRSKVLKEQNRQ------ 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
E D D++ D IVR+K F P+ V EA+ Q+ + H+F+ F N ET
Sbjct: 107 ----EKDPDLEER-------DRIVRVKKFNYKPMAVEEAVMQMNLIGHNFFVFVNLETET 155
Query: 279 INIVYKRKAGGYGVIIP 295
+N+VY+RK G YG++ P
Sbjct: 156 MNVVYRRKDGDYGLLEP 172
>gi|398305008|ref|ZP_10508594.1| hypothetical protein BvalD_05984 [Bacillus vallismortis DV1-F-3]
Length = 189
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 108/202 (53%), Gaps = 28/202 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK H V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVEKKIGKLERYFDHSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP---- 217
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 58 PMIDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPK 106
Query: 218 --VTQVVENDAD--VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ + +D D VQ E ED++ +D IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 107 YLLANGLGSDTDIAVQDEIEDEDSLD-IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTN 165
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
ET N+VY+R G YG+I P
Sbjct: 166 AETNLTNVVYRRNDGKYGLIEP 187
>gi|312142840|ref|YP_003994286.1| sigma 54 modulation protein/ribosomal protein S30EA [Halanaerobium
hydrogeniformans]
gi|311903491|gb|ADQ13932.1| sigma 54 modulation protein/ribosomal protein S30EA [Halanaerobium
hydrogeniformans]
Length = 196
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 12/201 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCE 157
+K++ GKN+++T ++K H EEKV K + K+ + RE ++ +++ E K I E
Sbjct: 1 MKIMTYGKNIDVTPSLKEHAEEKVRK-LQKYFNGAREPLEFNITM---EVEKERHI--VE 54
Query: 158 VTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
VT + HG++ RAEE +YASID V ++R+L+K K K +D K + + +E
Sbjct: 55 VTGYV--HGLILRAEESTGDMYASIDGVMDKLERQLKKYKTKINDKLIERKQEYKEEYKE 112
Query: 217 PVTQVVENDADVQSEEEDDN--FVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ + N EE D F ++V+ K F M P+ V EA Q++ + HDF+ F N
Sbjct: 113 ERKEQILNKGMEAEEERIDTEVFEPQVVKTKSFPMKPMNVEEACMQMDLIGHDFFVFYNG 172
Query: 275 ETGEINIVYKRKAGGYGVIIP 295
+T E N+VYKR G YG+I P
Sbjct: 173 DTEETNVVYKRNDGNYGLIEP 193
>gi|392304999|emb|CCI71362.1| hypothetical protein PPM_4555 [Paenibacillus polymyxa M1]
Length = 186
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-IRRCE 157
+ L ++G+ +E+TD +K++VE+K S L + D + G R + E
Sbjct: 1 MNLTVRGQQIEVTDALKDYVEKK-------FSRLEKYFDAPPTSDGSVTLSTTRDLHTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ V+RAE++++ +YASID V ++R++RK K K + R L V +P
Sbjct: 54 VTI-PLPGLVLRAEDESDDMYASIDAVVDKLERQIRKHKTKLNRKFRQEGSLKTLFVEDP 112
Query: 218 VTQV-VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
V V D D + +E E+VR K F + P+ V EAI Q+ + H+F+ F N +
Sbjct: 113 AGGVAVAEDEDAELDEL------EVVRTKRFLLKPMDVEEAILQMNMIGHNFFVFANIDN 166
Query: 277 GEINIVYKRKAGGYGVI 293
E+N+VYKR G YG+I
Sbjct: 167 EEVNVVYKRNDGKYGLI 183
>gi|350267769|ref|YP_004879076.1| hypothetical protein GYO_3873 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349600656|gb|AEP88444.1| YvyD [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 189
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 28/202 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK H V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVEKKIGKLERYFDHSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP---- 217
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPK 106
Query: 218 --VTQVVENDAD--VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ + +D D VQ E ED+ +D IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 107 YLLANGLGSDTDIAVQDEIEDEESLD-IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTN 165
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
ET N+VY+R G YG+I P
Sbjct: 166 AETNLTNVVYRRNDGKYGLIEP 187
>gi|199597234|ref|ZP_03210665.1| Ribosome-associated protein Y (PSrp-1) [Lactobacillus rhamnosus
HN001]
gi|258507891|ref|YP_003170642.1| ribosomal subunit interface protein [Lactobacillus rhamnosus GG]
gi|258539136|ref|YP_003173635.1| ribosomal subunit interface protein [Lactobacillus rhamnosus Lc
705]
gi|385827573|ref|YP_005865345.1| ribosome-associated protein [Lactobacillus rhamnosus GG]
gi|385834796|ref|YP_005872570.1| sigma 54 modulation protein/S30EA ribosomal protein [Lactobacillus
rhamnosus ATCC 8530]
gi|418070184|ref|ZP_12707459.1| ribosomal subunit interface protein [Lactobacillus rhamnosus R0011]
gi|421769335|ref|ZP_16206042.1| Ribosomal subunit interface protein [Lactobacillus rhamnosus
LRHMDP2]
gi|421772382|ref|ZP_16209038.1| Ribosomal subunit interface protein [Lactobacillus rhamnosus
LRHMDP3]
gi|199591750|gb|EDY99825.1| Ribosome-associated protein Y (PSrp-1) [Lactobacillus rhamnosus
HN001]
gi|257147818|emb|CAR86791.1| Ribosomal subunit interface protein [Lactobacillus rhamnosus GG]
gi|257150812|emb|CAR89784.1| Ribosomal subunit interface protein [Lactobacillus rhamnosus Lc
705]
gi|259649218|dbj|BAI41380.1| ribosome-associated protein [Lactobacillus rhamnosus GG]
gi|355394287|gb|AER63717.1| sigma 54 modulation protein/S30EA ribosomal protein [Lactobacillus
rhamnosus ATCC 8530]
gi|357539604|gb|EHJ23621.1| ribosomal subunit interface protein [Lactobacillus rhamnosus R0011]
gi|411183950|gb|EKS51085.1| Ribosomal subunit interface protein [Lactobacillus rhamnosus
LRHMDP3]
gi|411184466|gb|EKS51598.1| Ribosomal subunit interface protein [Lactobacillus rhamnosus
LRHMDP2]
Length = 185
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 29/198 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++N+VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRNYVEKRISKLNKFFGGSVTATAH------VNLKVYPDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 54 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
A+ + E+DDN ++VR K + P+ EAI Q++ + H+F+ F + +
Sbjct: 112 SNAP------AEPKPAEDDDNL--KVVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDAD 163
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKR+ G YG+I
Sbjct: 164 TNGTSIVYKRRDGRYGLI 181
>gi|377809275|ref|YP_005004496.1| Sigma 54 modulation protein / S30EA ribosomal protein [Pediococcus
claussenii ATCC BAA-344]
gi|361056016|gb|AEV94820.1| Sigma 54 modulation protein / S30EA ribosomal protein [Pediococcus
claussenii ATCC BAA-344]
Length = 188
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 113/195 (57%), Gaps = 21/195 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
++G+N+E+T+ ++++VE+++GK + K+ + V L V + K EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKRIGK-INKYFDDGSTPKAHVNLKVYQDKTAK------VEVTI 58
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
V+RAEE + +YAS+DLV+ ++R++RK K K + R KGF ++V P
Sbjct: 59 -PMSALVLRAEETSPDLYASVDLVTDKLERQIRKYKTKINRKSRE-KGFKGVEV--P--- 111
Query: 221 VVENDADVQSEEEDDNFVDE--IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
++A EE DD V E IVR K + P+ EAI Q++ + H+F+ + + E+G
Sbjct: 112 ---DEASTNDEEFDDEKVSEFDIVRTKQISLKPMDSEEAILQMDMLGHNFFIYEDAESGA 168
Query: 279 INIVYKRKAGGYGVI 293
++IVY+R+ G YG+I
Sbjct: 169 VDIVYRRRDGRYGLI 183
>gi|297565851|ref|YP_003684823.1| sigma 54 modulation protein/ribosomal protein S30EA [Meiothermus
silvanus DSM 9946]
gi|296850300|gb|ADH63315.1| sigma 54 modulation protein/ribosomal protein S30EA [Meiothermus
silvanus DSM 9946]
Length = 184
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 107/195 (54%), Gaps = 24/195 (12%)
Query: 105 GKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTL 160
G+N+E+T+ +KN++++K+ + L + + V LS+ + PRI + E+ +
Sbjct: 8 GRNVEITEALKNYLDKKLARLDRLAEGMGIMDARVVLSM-----AQSPRIGDRAKAEIQV 62
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K G+VR EE +YA+ID + ++ +L++ KE RH F + PV
Sbjct: 63 NLPK-GLVRVEESDADMYAAIDRMVDRLEVQLKRYKE------RH---FQEYRNHVPVMA 112
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+ + ++EE +IVR K F M P++ +A ++E + HDF+ FRN ET +IN
Sbjct: 113 GIPTPPESETEEGP-----QIVRTKRFAMKPMSPEDAAFEMEALGHDFFVFRNAETEDIN 167
Query: 281 IVYKRKAGGYGVIIP 295
++Y+R+ G YG+I P
Sbjct: 168 VIYRRRDGNYGLIEP 182
>gi|339627118|ref|YP_004718761.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Sulfobacillus acidophilus TPY]
gi|379008500|ref|YP_005257951.1| 30S ribosomal protein S30P [Sulfobacillus acidophilus DSM 10332]
gi|339284907|gb|AEJ39018.1| sigma 54 modulation protein/ribosomal protein S30EA [Sulfobacillus
acidophilus TPY]
gi|361054762|gb|AEW06279.1| SSU ribosomal protein S30P [Sulfobacillus acidophilus DSM 10332]
Length = 171
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 31/200 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +I++GKN+E+TD +K+HV K+ K H RLSV K I EV
Sbjct: 1 MDVIVRGKNVEVTDALKDHVTRKLSKMSKYFDHQEVTAQARLSVE-----KDRHI--VEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE-- 216
T+ + ++R EE +Y ++D V ++R+L K K RLK R
Sbjct: 54 TVPVGGY-LLRGEEAHPDMYVAVDRVVDKLERQLDKYK-------------TRLKPRHLN 99
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
V+E+ S EE D+ +VR K F P+TV EA+ Q+E + HDF+ F N ET
Sbjct: 100 DTKGVLED-----SGEEGDS---ALVRRKTFPRKPMTVDEAMMQMELLGHDFFAFTNAET 151
Query: 277 GEINIVYKRKAGGYGVIIPK 296
IN++Y+R+ G YG++ P+
Sbjct: 152 DTINVLYRRQDGNYGLLEPR 171
>gi|452991755|emb|CCQ96912.1| ribosome-associated sigma 54 modulation protein [Clostridium
ultunense Esp]
Length = 183
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 117/199 (58%), Gaps = 20/199 (10%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+I+G+N+E+T +K++VE+++ K + K+ R+++ ++++ + G R EVT+
Sbjct: 3 FLIRGENIEVTPALKDYVEKRMSK-LDKYFEYDRDIEATVTLKVYKDG-----HRVEVTI 56
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP--V 218
++RAE+ +E +YASID V ++R++RK K + NR K+RE +
Sbjct: 57 -PLTGLLLRAEDKSEDMYASIDNVVDKLERQVRKYKTR----------VNR-KLREGDGL 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ + + ++E D+ EIVR K F + P+ EAI Q+ + H+F+ F+N +T E
Sbjct: 105 KGAIHINGNGKTENPDEEEELEIVRTKRFNLKPMDAEEAILQMNLLGHNFFVFQNVDTNE 164
Query: 279 INIVYKRKAGGYGVIIPKG 297
+++VYKRK G YG+I P+
Sbjct: 165 VSVVYKRKDGRYGLIEPEA 183
>gi|389576795|ref|ZP_10166823.1| ribosomal subunit interface protein [Eubacterium cellulosolvens 6]
gi|389312280|gb|EIM57213.1| ribosomal subunit interface protein [Eubacterium cellulosolvens 6]
Length = 175
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 108/202 (53%), Gaps = 30/202 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+ + I GKN+E+T +K+ V EK+ K +H++ V LSV ++
Sbjct: 1 MNITISGKNIEVTSGLKSAVNEKLAKLERYFTPETHVM----VTLSVEKER-------QK 49
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ K ++R+E+ + +Y SIDLV +I+R+LRK K K D + F +
Sbjct: 50 IEVTIPVKGR-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKIIDKKQAAMNFQK---- 104
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+END +++EE +I R K FE+ P+ +A Q+E + H+F+ F N +
Sbjct: 105 ----AYIENDY-MENEE------IKIERSKKFEIKPMYPEDACVQMELLGHNFFVFMNAD 153
Query: 276 TGEINIVYKRKAGGYGVIIPKG 297
T ++N+VYKRK YG+I P+
Sbjct: 154 TDQVNVVYKRKGNTYGLIEPEN 175
>gi|423471338|ref|ZP_17448082.1| ribosomal subunit interface protein [Bacillus cereus BAG6O-2]
gi|402432818|gb|EJV64874.1| ribosomal subunit interface protein [Bacillus cereus BAG6O-2]
Length = 180
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 110/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T + +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALGEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSVKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
E A + + EED+ E+VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 110 -----EAVAVLDAVEEDEL---ELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|255659159|ref|ZP_05404568.1| ribosomal subunit interface protein [Mitsuokella multacida DSM
20544]
gi|260848610|gb|EEX68617.1| ribosomal subunit interface protein [Mitsuokella multacida DSM
20544]
Length = 181
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 109/191 (57%), Gaps = 19/191 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T +++ +VE++VGK V K+ V ++ V L+V KG I EVT+
Sbjct: 6 VRGKNIEITPSLREYVEKRVGK-VTKYFDSVGDIKVLLTV-----SKGRHI--VEVTVPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
++R EE +Y SIDLV ++R++ K K K + RL+ + T+ +
Sbjct: 58 PGGILLRGEESTMDMYTSIDLVVEKLERQIHKQKTKLA---------RRLRSGQFKTEEL 108
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
++ +E D + ++V+ K F + P+ V EAI ++ ++H+F+ FR+ ET +N+V
Sbjct: 109 KSSPMPDVHDESDTY--KVVKTKHFIVKPMDVQEAIMEMNLLNHNFFVFRDAETEAVNVV 166
Query: 283 YKRKAGGYGVI 293
Y+R G YG+I
Sbjct: 167 YRRDDGNYGLI 177
>gi|77408122|ref|ZP_00784869.1| ribosomal subunit interface protein [Streptococcus agalactiae COH1]
gi|77413335|ref|ZP_00789530.1| ribosomal subunit interface protein [Streptococcus agalactiae 515]
gi|339302218|ref|ZP_08651281.1| ribosomal subunit interface protein [Streptococcus agalactiae ATCC
13813]
gi|417004464|ref|ZP_11943197.1| ribosomal subunit interface protein [Streptococcus agalactiae FSL
S3-026]
gi|421147022|ref|ZP_15606716.1| ribosomal subunit interface protein [Streptococcus agalactiae
GB00112]
gi|421532662|ref|ZP_15979015.1| ribosomal subunit interface protein [Streptococcus agalactiae
STIR-CD-17]
gi|77160649|gb|EAO71765.1| ribosomal subunit interface protein [Streptococcus agalactiae 515]
gi|77173306|gb|EAO76428.1| ribosomal subunit interface protein [Streptococcus agalactiae COH1]
gi|319744322|gb|EFV96685.1| ribosomal subunit interface protein [Streptococcus agalactiae ATCC
13813]
gi|341578263|gb|EGS28660.1| ribosomal subunit interface protein [Streptococcus agalactiae FSL
S3-026]
gi|401686227|gb|EJS82213.1| ribosomal subunit interface protein [Streptococcus agalactiae
GB00112]
gi|403642070|gb|EJZ02945.1| ribosomal subunit interface protein [Streptococcus agalactiae
STIR-CD-17]
Length = 184
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 17/200 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++ +VE K+ K V K+ + +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEAIREYVETKLSK-VEKYFNEEQELDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TILID-SITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKYRE---------KIPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+QV + + + +EE IVR K + P+ V EA+ Q+E + HDF+ + + E
Sbjct: 107 SQVFTTEFEAEPDEE--AVSQRIVRTKNVNLKPMDVEEALLQMELLGHDFFIYTDAEDNT 164
Query: 279 INIVYKRKAGGYGVIIPKGN 298
N++YKR+ G G+I KGN
Sbjct: 165 TNVLYKREDGELGLIEAKGN 184
>gi|410452436|ref|ZP_11306425.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Bacillus
bataviensis LMG 21833]
gi|409934481|gb|EKN71366.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Bacillus
bataviensis LMG 21833]
Length = 182
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 103/195 (52%), Gaps = 16/195 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+T ++ +VE+K+ K + D + V +F + + + EV
Sbjct: 1 MKYNVRGENIEVTPAIREYVEKKITKL---ERYFTEAPDAMVHV-NLKFNQD-KTSKVEV 55
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ V+RAEE +YA IDL++ ++R++RK K K + R F PV
Sbjct: 56 TI-PLPQLVLRAEETNLDMYAGIDLITDKLERQIRKHKTKVNRKFREKGDF-------PV 107
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T ++ +EDD E+VR K F++ P+ EAI Q+ + H FY F N ++
Sbjct: 108 TFATTESSEAHDVDEDDL---ELVRTKRFDLKPMDSEEAILQMNMLGHSFYVFTNSDSNR 164
Query: 279 INIVYKRKAGGYGVI 293
N+VYKRK G YG+I
Sbjct: 165 TNVVYKRKDGRYGLI 179
>gi|423079071|ref|ZP_17067746.1| ribosomal subunit interface protein [Lactobacillus rhamnosus ATCC
21052]
gi|357548205|gb|EHJ30076.1| ribosomal subunit interface protein [Lactobacillus rhamnosus ATCC
21052]
Length = 226
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 29/198 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++N+VE+++ G +V +H V L V + K
Sbjct: 47 VRGENIEVTEAIRNYVEKRISKLNKFFGGSVTATAH------VNLKVYPDKTAK------ 94
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 95 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 152
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
A+ + E+DDN ++VR K + P+ EAI Q++ + H+F+ F + +
Sbjct: 153 SNAP------AEPKPAEDDDNL--KVVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDAD 204
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKR+ G YG+I
Sbjct: 205 TNGTSIVYKRRDGRYGLI 222
>gi|229551739|ref|ZP_04440464.1| ribosome-associated inhibitor protein Y [Lactobacillus rhamnosus
LMS2-1]
gi|229314870|gb|EEN80843.1| ribosome-associated inhibitor protein Y [Lactobacillus rhamnosus
LMS2-1]
Length = 226
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 29/198 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++N+VE+++ G +V +H V L V + K
Sbjct: 47 VRGENIEVTEAIRNYVEKRISKLNKFFGGSVTATAH------VNLKVYPDKTAK------ 94
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 95 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 152
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
A+ + E+DDN ++VR K + P+ EAI Q++ + H+F+ F + +
Sbjct: 153 SNAP------AEPKPAEDDDNL--KVVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDAD 204
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKR+ G YG+I
Sbjct: 205 TNGTSIVYKRRDGRYGLI 222
>gi|372324996|ref|ZP_09519585.1| Ribosomal subunit interface protein [Oenococcus kitaharae DSM
17330]
gi|366983804|gb|EHN59203.1| Ribosomal subunit interface protein [Oenococcus kitaharae DSM
17330]
Length = 190
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 21/194 (10%)
Query: 103 IQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
I+G+N+ T+ ++N+++ EK+ + +++ + V++R + + EVT
Sbjct: 6 IRGENISTTEAIENYIKMRLEKLNNYIDANNNPIAHVNLR--------KYNEKTFKVEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ +RAEE Y+++DLVS+ + R++RK K + + R KGF + E V
Sbjct: 58 M-PLPFLTLRAEETQSDFYSAVDLVSAKLLRQIRKFKTRVNRKSRE-KGFKGIDFNEQV- 114
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
D V E ED E++R K + P+ + EA Q+E +DHDF+ F N +T ++
Sbjct: 115 -----DPLVPEEAEDKKL--EVIRRKTLSLKPMDLEEAALQMEMLDHDFFLFLNADTNQL 167
Query: 280 NIVYKRKAGGYGVI 293
+I+YKR G YG+I
Sbjct: 168 DIIYKRDDGKYGLI 181
>gi|222530072|ref|YP_002573954.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Caldicellulosiruptor bescii DSM 6725]
gi|222456919|gb|ACM61181.1| sigma 54 modulation protein/ribosomal protein S30EA
[Caldicellulosiruptor bescii DSM 6725]
Length = 181
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 113/199 (56%), Gaps = 20/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+E+TD +K +E+K+ K + ++ L +V V LSV K I EV
Sbjct: 1 MNFIISGKNIEVTDALKERIEKKLSK-LERYIKLNTDVHVTLSVE-----KISHI--VEV 52
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HG ++RAEE + +Y++IDLV ++R++RK K K + R K E
Sbjct: 53 TI--PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIA---------KRAKDAES 101
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + + + E +++N I + K F + P++V EAI Q+ + H+F+ F N++T
Sbjct: 102 LRYMTFELEEPEKEVQEENSEFRIAKTKRFPIKPMSVEEAILQMNLLGHNFFVFLNQDTD 161
Query: 278 EINIVYKRKAGGYGVIIPK 296
++N+VY+R G YG+I P+
Sbjct: 162 KVNVVYRRNDGAYGLIEPE 180
>gi|299821878|ref|ZP_07053766.1| ribosomal subunit interface protein [Listeria grayi DSM 20601]
gi|299817543|gb|EFI84779.1| ribosomal subunit interface protein [Listeria grayi DSM 20601]
Length = 189
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 113/199 (56%), Gaps = 20/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE+K+ K + ++ + + +V ++++ + + EV
Sbjct: 2 LKYNIRGENIEVTEPIRDYVEKKIDK-LERYFNETPDANVHVNLKV----YSDKSAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ + V+RAEE +YAS+DL++ ++R++RK + K D G F ++
Sbjct: 57 TI-PLPNLVLRAEETNGDLYASVDLIADKLERQIRKHKTKVNRKFRDKGSEKDYFAFSEI 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
ND+ SEE D ++ EIVR K F + P+ EA+ Q+ + H+F+ F +
Sbjct: 116 ---------NDS-TPSEETDSDYDIEIVRTKSFSLKPMDSEEAVLQMNLLGHNFFVFNDA 165
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET NIVYKRK G YG+I
Sbjct: 166 ETNGTNIVYKRKDGKYGLI 184
>gi|225572934|ref|ZP_03781689.1| hypothetical protein RUMHYD_01125 [Blautia hydrogenotrophica DSM
10507]
gi|225039704|gb|EEG49950.1| ribosomal subunit interface protein [Blautia hydrogenotrophica DSM
10507]
Length = 175
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 24/196 (12%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
II GKNL +TD ++ VE+K+GK + ++ E+ V LSV ++ EVT+
Sbjct: 3 FIISGKNLTVTDGLRTAVEDKLGK-LERYFTPDTEIIVTLSVEKSR-------QKIEVTI 54
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K + ++R+E+ + +Y SIDLV +I+R+LRK K K D + F +
Sbjct: 55 PVKGN-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKTKIVDKEKAGDHFQK--------- 104
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
A ++ E E+++ V +I R K F++ P+ +A Q+E + H+F+ F N ET ++N
Sbjct: 105 -----AFIEKEYEEEDEV-KIQRTKKFDIKPMYPEDACVQMELLGHNFFVFCNAETDQVN 158
Query: 281 IVYKRKAGGYGVIIPK 296
+VYKRK YG+I P+
Sbjct: 159 VVYKRKGNTYGLIEPE 174
>gi|159900805|ref|YP_001547052.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Herpetosiphon aurantiacus DSM 785]
gi|159893844|gb|ABX06924.1| sigma 54 modulation protein/ribosomal protein S30EA [Herpetosiphon
aurantiacus DSM 785]
Length = 186
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 98/194 (50%), Gaps = 12/194 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+ +N++L D K ++EK+GK +L D ++ R + TL
Sbjct: 5 IKSRNIKLHDAQKAFIQEKLGKL---ERYLDGINDWKVECRFETLRGSGETYTVQATLLA 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
++RAEE +YA+++ V +QR++R+ KEK + R K+R +++
Sbjct: 62 DHGIILRAEERDRELYAAVEAVHDNLQRQIRRFKEKH---------YRRGKLRRTAGEII 112
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
E+ + +I+R K + P+ EAIEQ+E + H F+ FR+ ET +I +V
Sbjct: 113 AAPLPALPEDAEQAEERQIIRAKEVTLRPMFSDEAIEQMELLGHSFFVFRDAETEKIQVV 172
Query: 283 YKRKAGGYGVIIPK 296
Y+R G YG+I+P+
Sbjct: 173 YRRNDGNYGLIMPR 186
>gi|251799708|ref|YP_003014439.1| sigma 54 modulation protein/ribosomal protein S30EA [Paenibacillus
sp. JDR-2]
gi|247547334|gb|ACT04353.1| sigma 54 modulation protein/ribosomal protein S30EA [Paenibacillus
sp. JDR-2]
Length = 182
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 16/195 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II+G +++T+ ++ + +K+ + E V LSV G+ I V
Sbjct: 1 MKYIIRGHRIQVTEALREYAVKKISRLEKYFEAPASETTVTLSVTKGKHAVEVTIPLVGV 60
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
L RAE+ +E +Y+SID+V ++R++RK K K + RH G L +E +
Sbjct: 61 ML--------RAEDKSEDMYSSIDVVVDKLERQIRKHKTKMNRKFRHESGVKAL-FKEGL 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+Q + D EED+ E+VR K F + P+ V EAI Q+ V H+F+ F N + E
Sbjct: 112 SQTAVSVMD----EEDEL---ELVRTKRFMLKPMDVEEAILQMNMVGHNFFVFSNIDNKE 164
Query: 279 INIVYKRKAGGYGVI 293
+N+VYKR G YG+I
Sbjct: 165 VNVVYKRSDGKYGLI 179
>gi|430748510|ref|YP_007211418.1| ribosomal subunit interface protein [Thermobacillus composti KWC4]
gi|430732475|gb|AGA56420.1| ribosomal subunit interface protein [Thermobacillus composti KWC4]
Length = 184
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 38/203 (18%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL-- 160
I+G+ L +T+ ++++ E+K+ R ++ + P +VTL
Sbjct: 5 IRGRQLPVTEALRDYAEKKLS-------------------RLDKYFEAPLASDAQVTLSV 45
Query: 161 FTKKHGV----------VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFN 210
KH V +RAEE + +YA+IDLV ++R++RK K + + R +G
Sbjct: 46 IKNKHVVEVTIPLPGVLLRAEERHDDMYAAIDLVVDKLERQIRKHKTRVNRKLRQDRGLK 105
Query: 211 RLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
L + V V EEDD F E+VR K + P+ V EAI Q+ + H+F+
Sbjct: 106 ALFTEDSAGAVT-----VAEAEEDDAF--EVVRTKRHTLKPMDVDEAILQMNLLGHNFFV 158
Query: 271 FRNEETGEINIVYKRKAGGYGVI 293
F N+ET E+N+VY+R G YG+I
Sbjct: 159 FINDETKEVNVVYRRHDGKYGLI 181
>gi|336113347|ref|YP_004568114.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Bacillus
coagulans 2-6]
gi|335366777|gb|AEH52728.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
coagulans 2-6]
Length = 186
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 108/192 (56%), Gaps = 15/192 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP-RIRRCEVTLF 161
I+G+N+E+T ++++VE+KV K + V D ++V+ P + + E+T+
Sbjct: 6 IRGENIEVTPAIRDYVEKKVNKL---DRYFVETPDTSVNVK---LKVNPDKTSKVEITI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
V+RAEE E +YA+IDL++ ++R++RK K K + R KG R ++ P +
Sbjct: 59 PMPQLVLRAEETNEDMYAAIDLIADKLERQIRKHKTKVNRKLRE-KGSTR-ELFTPDAVL 116
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
E A +EED +IVR K F + P+ EA+ Q+ + H+F+ + + ET NI
Sbjct: 117 KEKQA---RKEEDSEL--QIVRTKHFNLKPMDSEEAVLQMNLLGHNFFIYTDAETNHTNI 171
Query: 282 VYKRKAGGYGVI 293
VY+RK G YG+I
Sbjct: 172 VYRRKDGKYGLI 183
>gi|78044633|ref|YP_359028.1| ribosomal subunit interface protein [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996748|gb|ABB15647.1| ribosomal subunit interface protein [Carboxydothermus
hydrogenoformans Z-2901]
Length = 177
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 106/193 (54%), Gaps = 22/193 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T +K + E+++ K + K+ + V V L V G + + EVT+
Sbjct: 5 VRGKNIEVTPALKEYAEKRLAK-LEKYLPKIDVVHVTLLVEGD-------LHKTEVTIPV 56
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE++ +Y+SIDLV ++R+ +K KEK ++ K +
Sbjct: 57 AGY-LLRGEEESPDMYSSIDLVVDKLERQAKKYKEKLYARFKNNKN------------IA 103
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ ++ E DN + +IV+ K F + P++ EA Q+E + H F+ F N +T EIN+V
Sbjct: 104 TGEKSAETTPEPDNEI-KIVKSKRFAIKPMSPEEAAMQMELLGHSFFVFTNADTDEINVV 162
Query: 283 YKRKAGGYGVIIP 295
YKR+ G YG+I P
Sbjct: 163 YKRRDGKYGLIEP 175
>gi|323703020|ref|ZP_08114676.1| ribosomal subunit interface protein [Desulfotomaculum nigrificans
DSM 574]
gi|333924713|ref|YP_004498293.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323532033|gb|EGB21916.1| ribosomal subunit interface protein [Desulfotomaculum nigrificans
DSM 574]
gi|333750274|gb|AEF95381.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 174
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 107/198 (54%), Gaps = 26/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKN+++T ++++VE+++GK + K + E L V G ++ EV
Sbjct: 1 MKVQVRGKNIDVTPALRDYVEKRLGK-LEKFLDNIGEAQATLVVEGDA-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE +Y++IDLV ++R++ + K K NR R P
Sbjct: 53 TIPVNGM-LLRGEEATGDMYSAIDLVVEKMERQISRYKGK----------INRRNGRNPA 101
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
DV E+ ++ +++R K F + P+ + EAI Q+ + HDF+ F N +T +
Sbjct: 102 -------GDVAGGEKIEDETPKVLRTKRFAIKPMPLDEAIMQMNLLGHDFFVFSNADTEQ 154
Query: 279 INIVYKRKAGGYGVIIPK 296
+N++YKRK G YG+I P+
Sbjct: 155 VNVIYKRKDGNYGLIEPE 172
>gi|417980130|ref|ZP_12620811.1| ribosomal subunit interface protein [Lactobacillus casei 12A]
gi|410525357|gb|EKQ00259.1| ribosomal subunit interface protein [Lactobacillus casei 12A]
Length = 185
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 107/198 (54%), Gaps = 29/198 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++++VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRSYVEKRISKLNKFFGGSVTATAH------VNLKVYSDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 54 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
A+ + E+DDN +VR K + P+ EAI Q++ + H+F+ F + +
Sbjct: 112 ATAP------AEPKPAEDDDNLT--VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDAD 163
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKR+ G YG+I
Sbjct: 164 TNGTSIVYKRRDGCYGLI 181
>gi|319650631|ref|ZP_08004771.1| ribosomal subunit interface protein [Bacillus sp. 2_A_57_CT2]
gi|317397812|gb|EFV78510.1| ribosomal subunit interface protein [Bacillus sp. 2_A_57_CT2]
Length = 185
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 21/195 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE+K+ K + D + V + + EVT+
Sbjct: 5 IRGENIEVTPAIREYVEKKIAKL---ERYFTETPDANVHVNLKTYNNNRS--KVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKVREPV 218
+ V+RAEED + +YA+IDL++ ++R++RK + K + G F L+
Sbjct: 59 MPNLVLRAEEDHDDMYAAIDLITDKLERQIRKHKTKVNRKFREKGNLTAVFAALENEIEA 118
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ E D D+ E+VR K F++ P+ EAI Q+ + H FY F N E+
Sbjct: 119 PEAEEEDNDL-----------EVVRQKSFDLKPMDSEEAILQMNMLGHSFYVFTNAESNL 167
Query: 279 INIVYKRKAGGYGVI 293
N+VYKRK G YG+I
Sbjct: 168 TNVVYKRKDGRYGLI 182
>gi|375310906|ref|ZP_09776170.1| hypothetical protein WG8_4704 [Paenibacillus sp. Aloe-11]
gi|375077104|gb|EHS55348.1| hypothetical protein WG8_4704 [Paenibacillus sp. Aloe-11]
Length = 184
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 18/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-IRRCE 157
+ L ++G+ +E+TD +K++V++K S L + D + G R + E
Sbjct: 1 MNLTVRGQQIEVTDALKDYVDKK-------FSRLEKYFDAPPTSDGSVTLSTTRDLHTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ V+RAE++++ +YASID V ++R++RK K K + R L V +P
Sbjct: 54 VTI-PLPGLVLRAEDESDDMYASIDAVVDKLERQIRKNKTKLNRKFRQKGSLKTLFVEDP 112
Query: 218 V-TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ VV DAD+ E +VR K F + P+ V EAI Q+ V H+F+ F N +
Sbjct: 113 AGSVVVAEDADLDELE--------VVRTKRFLLKPMDVEEAILQMNMVGHNFFVFANIDN 164
Query: 277 GEINIVYKRKAGGYGVI 293
E+++VYKR G YG+I
Sbjct: 165 EEVSVVYKRNDGKYGLI 181
>gi|210623869|ref|ZP_03294104.1| hypothetical protein CLOHIR_02055 [Clostridium hiranonis DSM 13275]
gi|210153295|gb|EEA84301.1| hypothetical protein CLOHIR_02055 [Clostridium hiranonis DSM 13275]
Length = 190
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 26/208 (12%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK 149
MS G S +++ + GK+++LTD +K + E+K+ K +L + +V+++V G+
Sbjct: 1 MSAKGE-SFMRVTVTGKHVKLTDGIKGYTEDKLKKL---GKYLDEDTEVKVTVSAGK--- 53
Query: 150 GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
++ EV + +R EE+ + +Y +IDLV + R++ K K+K
Sbjct: 54 --NRQKVEVMIPNVNGHTIRVEEEQDNLYPAIDLVCDKLSRQIIKYKDK----------- 100
Query: 210 NRLKVREPVTQVVENDADVQSEEEDD----NFVDEIVRMKFFEMPPLTVSEAIEQLENVD 265
K R P + + + +E D I R K F + P+++ EAI Q+ D
Sbjct: 101 --FKTRVPGNFSIRYEGIEELAQELDYEVEEPEVVIERRKKFNLKPMSIEEAILQMNLTD 158
Query: 266 HDFYGFRNEETGEINIVYKRKAGGYGVI 293
HDFY F++ E+ EI +VYKRK GGYG+I
Sbjct: 159 HDFYMFKDRESFEICLVYKRKEGGYGLI 186
>gi|237666372|ref|ZP_04526357.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|237657571|gb|EEP55126.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 177
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 111/198 (56%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + KN+ELT +K V++K+ K + K+ + E LSV+ K +I EV
Sbjct: 1 MKVTVIAKNIELTQALKEIVQKKISK-LEKYFEVEVEAKATLSVQ-----KNRQI--IEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ F ++R+EE + +Y SIDLV ++R++RK K + S F L
Sbjct: 53 TIPFN--GAILRSEESTDDMYKSIDLVEDKLERQIRKQKTRLSRKNNGSLKFAAL----- 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
ND+ V+S E+D+ +V++K F + P+ EAI Q++ + H+F+ +++ E+
Sbjct: 106 ------NDSKVESNEDDEG---SLVKVKKFGVKPMDSEEAILQMDLLGHNFFVYQDSESS 156
Query: 278 EINIVYKRKAGGYGVIIP 295
++N+VYKRK G YG++ P
Sbjct: 157 KVNVVYKRKDGNYGLLEP 174
>gi|416849489|ref|ZP_11908108.1| ribosomal subunit interface protein, partial [Staphylococcus aureus
O46]
gi|323441289|gb|EGA98957.1| ribosomal subunit interface protein [Staphylococcus aureus O46]
Length = 183
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 19/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDR 166
Query: 275 ETGEINIVYKRKAGGYG 291
ET +IVY+RK G YG
Sbjct: 167 ETDGTSIVYRRKDGKYG 183
>gi|253680810|ref|ZP_04861613.1| ribosomal subunit interface protein [Clostridium botulinum D str.
1873]
gi|416348665|ref|ZP_11680423.1| ribosomal subunit interface protein [Clostridium botulinum C str.
Stockholm]
gi|253562659|gb|EES92105.1| ribosomal subunit interface protein [Clostridium botulinum D str.
1873]
gi|338196737|gb|EGO88918.1| ribosomal subunit interface protein [Clostridium botulinum C str.
Stockholm]
Length = 178
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 117/202 (57%), Gaps = 31/202 (15%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
++K+I GKN+E+T ++ VE K+ K + K+ + +V LSV+ K +I E
Sbjct: 2 NIKVI--GKNIEVTKGLREAVERKLSK-LDKYFNPNVKVITTLSVQ-----KSRQI--VE 51
Query: 158 VTL-FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLK 213
VT+ F +GV+ RAEE +YA+IDLV ++R++RK K K + HG +K
Sbjct: 52 VTIPF---NGVILRAEEANNDMYAAIDLVLEKLERQIRKQKTKLEKRKHGDALKF----- 103
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ + + + DA+ DN +IV+ K F + P++ EA+ Q+E + H+F+ FRN
Sbjct: 104 --QFIPEYIPKDAE-------DNVESKIVKTKKFAVKPMSNEEAVLQMELLGHNFFVFRN 154
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
+T E+N++YKRK G YG+I P
Sbjct: 155 SDTDEVNVLYKRKDGQYGLIEP 176
>gi|410594009|ref|YP_006950736.1| Ribosomal subunit interface protein [Streptococcus agalactiae
SA20-06]
gi|410517648|gb|AFV71792.1| Ribosomal subunit interface protein [Streptococcus agalactiae
SA20-06]
Length = 184
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 17/200 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++ +VE K+ K V K+ + +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEAIREYVETKLSK-VEKYFNEEQELDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TILID-SITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKYRE---------KIPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+QV + + + +EE IVR K + P+ V EA+ Q+E + HDF+ + + E
Sbjct: 107 SQVFTTEFEAEPDEE--VVSQRIVRTKNVNLKPMDVEEALLQMELLGHDFFIYTDAEDNT 164
Query: 279 INIVYKRKAGGYGVIIPKGN 298
N++YKR+ G G+I KGN
Sbjct: 165 TNVLYKREDGELGLIEAKGN 184
>gi|299535988|ref|ZP_07049307.1| hypothetical protein BFZC1_08185 [Lysinibacillus fusiformis ZC1]
gi|424739935|ref|ZP_18168350.1| hypothetical protein C518_4174 [Lysinibacillus fusiformis ZB2]
gi|298728593|gb|EFI69149.1| hypothetical protein BFZC1_08185 [Lysinibacillus fusiformis ZC1]
gi|422946467|gb|EKU40876.1| hypothetical protein C518_4174 [Lysinibacillus fusiformis ZB2]
Length = 183
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 104/191 (54%), Gaps = 16/191 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE K+ K + +V+ +V + + + EVT+
Sbjct: 6 IRGENIEVTPAIREYVENKIDKV---ERYFNEDVNANANVNLKVYN--DKQTKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE +YA++DL+ ++R++RK K K + R +G + TQ
Sbjct: 60 MKNLTLRAEERHNDMYAAVDLIVDKLERQIRKHKTKVNRKFREREG---AGLYFATTQAA 116
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
AD SEEE+ + IVR K F++ P+ EA+ Q+ + HDFY F + E+ NIV
Sbjct: 117 ---ADAVSEEEEYS----IVRTKQFDLKPMDQEEAVLQMNMLGHDFYVFTDAESNGTNIV 169
Query: 283 YKRKAGGYGVI 293
YKRK G YG+I
Sbjct: 170 YKRKDGKYGLI 180
>gi|421766451|ref|ZP_16203225.1| Ribosomal subunit interface protein [Lactococcus garvieae DCC43]
gi|407625219|gb|EKF51934.1| Ribosomal subunit interface protein [Lactococcus garvieae DCC43]
Length = 185
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 113/196 (57%), Gaps = 16/196 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N ELTD+++++VE+KVGK + K+ + EV ++++ + + EV
Sbjct: 2 IKYNIRGENFELTDSIRSYVEDKVGK-LEKYFNDGHEVTAYVNLKV----YSDKRYKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAE+ A+ +YA+ID V + ++R++RK K + + + K+ P
Sbjct: 57 TV-PAKNVTLRAEDTADDMYAAIDFVEAKLERQIRKYKTRVN---------RKSKINVPT 106
Query: 219 TQVVEND-ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
Q ++ A + ++EE + +IVR K + P+ EA+ Q++ + HDFY F + +T
Sbjct: 107 GQSFGDEFAPLDADEEVNEEQVKIVRTKHVSLKPMDAEEAVLQMDMLGHDFYIFTDADTD 166
Query: 278 EINIVYKRKAGGYGVI 293
N+VY+R G G+I
Sbjct: 167 GTNVVYRRTDGNIGLI 182
>gi|284048022|ref|YP_003398361.1| ribosomal subunit interface protein [Acidaminococcus fermentans DSM
20731]
gi|283952243|gb|ADB47046.1| ribosomal subunit interface protein [Acidaminococcus fermentans DSM
20731]
Length = 181
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 107/196 (54%), Gaps = 23/196 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T +K++VE++V + + K V E+ + V G E+T+
Sbjct: 5 VRGKNIEVTQALKDYVEKRV-QTITKQFKTVGEITAVMRVEKGN-------HTVEITV-- 54
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVREPVTQ 220
G+V RA+E ++ +YASID I+R++ K K R MK ++ K P
Sbjct: 55 PASGIVLRAQETSDNMYASIDQCVEKIERQIHKYK------TRLMKRKYSNFKDAAPAP- 107
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+ E+ +V EE F + R K + M P+ V EAI Q+ ++HDF+ F N ET +I
Sbjct: 108 LPEDSEEV--PEETGEFT--VARTKNYAMRPMGVQEAIMQMNMLNHDFFVFFNAETEKIA 163
Query: 281 IVYKRKAGGYGVIIPK 296
IVY+RK+G YG+I P+
Sbjct: 164 IVYRRKSGDYGLINPE 179
>gi|418004631|ref|ZP_12644647.1| ribosomal subunit interface protein [Lactobacillus casei UW1]
gi|410549169|gb|EKQ23344.1| ribosomal subunit interface protein [Lactobacillus casei UW1]
Length = 185
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 107/198 (54%), Gaps = 29/198 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++++VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRSYVEKRISKLNKFFGGSVTATAH------VNLKVYSDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 54 VEVTI-PLPFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
A+ + E+DDN +VR K + P+ EAI Q++ + H+F+ F + +
Sbjct: 112 ATAP------AEPKPAEDDDNLT--VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDAD 163
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKR+ G YG+I
Sbjct: 164 TNGTSIVYKRRDGRYGLI 181
>gi|116494435|ref|YP_806169.1| ribosome-associated protein [Lactobacillus casei ATCC 334]
gi|191637819|ref|YP_001986985.1| ribosomal subunit interface protein [Lactobacillus casei BL23]
gi|227535602|ref|ZP_03965651.1| ribosome-associated inhibitor protein Y [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239631184|ref|ZP_04674215.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|301065944|ref|YP_003787967.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus casei str.
Zhang]
gi|385819558|ref|YP_005855945.1| ribosome-associated inhibitor protein Y [Lactobacillus casei LC2W]
gi|385822720|ref|YP_005859062.1| ribosome-associated inhibitor protein Y [Lactobacillus casei BD-II]
gi|409996680|ref|YP_006751081.1| hypothetical protein BN194_10150 [Lactobacillus casei W56]
gi|417982992|ref|ZP_12623636.1| ribosomal subunit interface protein [Lactobacillus casei 21/1]
gi|417986219|ref|ZP_12626791.1| ribosomal subunit interface protein [Lactobacillus casei 32G]
gi|417989102|ref|ZP_12629621.1| ribosomal subunit interface protein [Lactobacillus casei A2-362]
gi|417992430|ref|ZP_12632787.1| ribosomal subunit interface protein [Lactobacillus casei CRF28]
gi|417995712|ref|ZP_12636000.1| ribosomal subunit interface protein [Lactobacillus casei M36]
gi|418001540|ref|ZP_12641680.1| ribosomal subunit interface protein [Lactobacillus casei UCD174]
gi|418010340|ref|ZP_12650118.1| ribosomal subunit interface protein [Lactobacillus casei Lc-10]
gi|418013305|ref|ZP_12652949.1| ribosomal subunit interface protein [Lactobacillus casei Lpc-37]
gi|116104585|gb|ABJ69727.1| SSU ribosomal protein S30P [Lactobacillus casei ATCC 334]
gi|190712121|emb|CAQ66127.1| Ribosomal subunit interface protein [Lactobacillus casei BL23]
gi|227186732|gb|EEI66799.1| ribosome-associated inhibitor protein Y [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239525649|gb|EEQ64650.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|300438351|gb|ADK18117.1| Ribosome-associated protein Y (PSrp-1) [Lactobacillus casei str.
Zhang]
gi|327381885|gb|AEA53361.1| Ribosome-associated inhibitor protein Y [Lactobacillus casei LC2W]
gi|327385047|gb|AEA56521.1| Ribosome-associated inhibitor protein Y [Lactobacillus casei BD-II]
gi|406357692|emb|CCK21962.1| Uncharacterized protein SE_0534 [Lactobacillus casei W56]
gi|410526412|gb|EKQ01299.1| ribosomal subunit interface protein [Lactobacillus casei 32G]
gi|410529005|gb|EKQ03837.1| ribosomal subunit interface protein [Lactobacillus casei 21/1]
gi|410533421|gb|EKQ08100.1| ribosomal subunit interface protein [Lactobacillus casei CRF28]
gi|410536869|gb|EKQ11457.1| ribosomal subunit interface protein [Lactobacillus casei M36]
gi|410539694|gb|EKQ14220.1| ribosomal subunit interface protein [Lactobacillus casei A2-362]
gi|410546312|gb|EKQ20571.1| ribosomal subunit interface protein [Lactobacillus casei UCD174]
gi|410554064|gb|EKQ28048.1| ribosomal subunit interface protein [Lactobacillus casei Lc-10]
gi|410555831|gb|EKQ29762.1| ribosomal subunit interface protein [Lactobacillus casei Lpc-37]
Length = 185
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 107/198 (54%), Gaps = 29/198 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++++VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRSYVEKRISKLNKFFGGSVTATAH------VNLKVYSDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 54 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
A+ + E+DDN +VR K + P+ EAI Q++ + H+F+ F + +
Sbjct: 112 ATAP------AEPKPAEDDDNLT--VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDAD 163
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKR+ G YG+I
Sbjct: 164 TNGTSIVYKRRDGRYGLI 181
>gi|335048314|ref|ZP_08541334.1| ribosomal subunit interface protein [Parvimonas sp. oral taxon 110
str. F0139]
gi|333758114|gb|EGL35672.1| ribosomal subunit interface protein [Parvimonas sp. oral taxon 110
str. F0139]
Length = 174
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 105/197 (53%), Gaps = 24/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL GKN+E+TD +K +K K ++++ +++ K +I E
Sbjct: 1 MKLQFIGKNIEITDALKEITAKKFEKL---DKFFSKDIEGKVTYSAV---KNDKI--FEA 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ ++RAEE +Y SID+V ++R++RK K K + ++ K+ EP+
Sbjct: 53 TIYLPNSTILRAEESTNDMYTSIDIVLDNLERQIRKNKTKLQKKYQALETIRFEKIAEPL 112
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
EEE+ +IVR+K F++ ++ EAI Q+E ++HDF+ F+N + +
Sbjct: 113 ------------EEEES----KIVRVKNFDVATMSEEEAILQIELLNHDFFIFKNAKDSK 156
Query: 279 INIVYKRKAGGYGVIIP 295
N++YKRK G YG+II
Sbjct: 157 TNVLYKRKDGNYGLIIA 173
>gi|334139339|ref|ZP_08512731.1| ribosomal subunit interface protein [Paenibacillus sp. HGF7]
gi|333602152|gb|EGL13583.1| ribosomal subunit interface protein [Paenibacillus sp. HGF7]
Length = 182
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 112/199 (56%), Gaps = 21/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG-EFGKGPRIRRCE 157
+K ++G +LE+T ++ +VE+K+ S L + + L+ G I E
Sbjct: 1 MKFTVRGDHLEITAALREYVEKKL-------SRLEKYFEAPLNSEGFVTLSVVKNIHTVE 53
Query: 158 VTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
VT+ GV+ RAE + +YA+IDLV ++R++RK K K + R ++G N+ ++ +
Sbjct: 54 VTI--PLQGVLLRAENKDQDMYAAIDLVVDKLERQVRKHKTKMNRKIR-LEG-NKRELSK 109
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+QV+ D EEE+D E+VR K F + P+ + EAI Q+ V HDF+ F N +T
Sbjct: 110 LESQVLTMD-----EEEEDY---ELVRTKRFTLKPMDIDEAILQMNMVGHDFFVFSNMDT 161
Query: 277 GEINIVYKRKAGGYGVIIP 295
++N+VYKR G YG+I P
Sbjct: 162 EQVNVVYKRDDGRYGLIEP 180
>gi|363890325|ref|ZP_09317663.1| hypothetical protein HMPREF9628_00426 [Eubacteriaceae bacterium
CM5]
gi|363891272|ref|ZP_09318451.1| ribosomal subunit interface protein [Eubacteriaceae bacterium CM2]
gi|363893544|ref|ZP_09320642.1| hypothetical protein HMPREF9629_00156 [Eubacteriaceae bacterium
ACC19a]
gi|402837969|ref|ZP_10886484.1| ribosomal subunit interface protein [Eubacteriaceae bacterium
OBRC8]
gi|361963848|gb|EHL16914.1| hypothetical protein HMPREF9629_00156 [Eubacteriaceae bacterium
ACC19a]
gi|361965329|gb|EHL18311.1| ribosomal subunit interface protein [Eubacteriaceae bacterium CM2]
gi|361965769|gb|EHL18740.1| hypothetical protein HMPREF9628_00426 [Eubacteriaceae bacterium
CM5]
gi|402274400|gb|EJU23584.1| ribosomal subunit interface protein [Eubacteriaceae bacterium
OBRC8]
Length = 173
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 27/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC-E 157
+ +I+ GK + L+ K+ +E K+ S L + D + VR K + C E
Sbjct: 1 MNIILSGKQINLSQKQKDTIETKL-------SRLEKYFDKDMIVRATASHKKDK--SCVE 51
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K V+RAE +Y ++D V S + R+LRK K K + G F +
Sbjct: 52 VTIPVNK-SVIRAEATDYDMYCAVDEVVSKLARQLRKYKTKLKNRGTETIRFENI----- 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+D+ V +EEE +IVR K F+ P++ EA Q+E + HDF+ F N +T
Sbjct: 106 ------DDSSVSNEEEQ-----KIVRRKKFDFLPMSEEEACLQMEMIGHDFFVFVNADTD 154
Query: 278 EINIVYKRKAGGYGVIIP 295
+N++YKRK G YG+I P
Sbjct: 155 SVNVLYKRKDGHYGIIEP 172
>gi|397904226|ref|ZP_10505147.1| Ribosomal subunit interface protein [Caloramator australicus RC3]
gi|343178973|emb|CCC58046.1| Ribosomal subunit interface protein [Caloramator australicus RC3]
Length = 177
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 112/202 (55%), Gaps = 30/202 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K +I GKN+ LTD +K+ VE+K+GK + K+ +E V LSV+ K +I EV
Sbjct: 1 MKFMITGKNIVLTDALKDVVEKKLGK-LEKYFSPEQEAHVTLSVQ-----KNRQI--IEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK---EKESDHGRHMKGFNRLKV 214
T+ F ++R EE + +Y SID V I+R++ K K +K +G +K + +
Sbjct: 53 TIPFNGM--ILRGEESSGDMYTSIDNVVEKIERQIIKHKTKLQKRVHNGETLKFLDIPEY 110
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
R D +EE +IV+ K F + P+ V EAI ++E + H+F+ FRN
Sbjct: 111 R-----------DYDEDEEG-----KIVKKKRFSVKPMDVEEAILEMELLGHNFFVFRNA 154
Query: 275 ETGEINIVYKRKAGGYGVIIPK 296
T E+N+VYKRK G YG+I P+
Sbjct: 155 NTEEVNVVYKRKDGNYGIIEPE 176
>gi|56964833|ref|YP_176564.1| ribosomal protein S30EA [Bacillus clausii KSM-K16]
gi|56911076|dbj|BAD65603.1| ribosomal protein S30EA [Bacillus clausii KSM-K16]
Length = 184
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 110/199 (55%), Gaps = 23/199 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRG-GEFGKGPRIRRCEVTL 160
I+G+N+E+T ++ ++E+KVGK +V+V+L V G GE EVT+
Sbjct: 5 IRGENIEVTPAIREYIEKKVGKLERYFDTTPTADVNVKLQVLGSGE-------SSIEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K ++R EE +YA+ID+V ++R++RK K K + R + LK
Sbjct: 58 PMPKL-LLRGEEINADMYAAIDIVVEKLERQIRKYKTKVN---RKFRQEGSLKY------ 107
Query: 221 VVENDADVQSEE--EDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ +N+ + +E EDD E+VR K F + P+ EAI Q++ + H+F+ F + E+G
Sbjct: 108 MFKNELEPLRDEVAEDDEL--EVVRTKRFNLKPMDAEEAILQMDLLGHNFFVFSDAESGS 165
Query: 279 INIVYKRKAGGYGVIIPKG 297
N+VY+RK G YG+I P+
Sbjct: 166 TNVVYRRKDGKYGLIEPEA 184
>gi|332295606|ref|YP_004437529.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermodesulfobium narugense DSM 14796]
gi|332178709|gb|AEE14398.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermodesulfobium narugense DSM 14796]
Length = 179
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 20/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++++++ K + L++ +KN+ K+ K + K + EV V LS + K I EV
Sbjct: 1 MQIVVKDKGVNLSEDLKNYTTNKISK-LEKFFKKIIEVQVVLSKTSAK--KNKLIFSAEV 57
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F +RA+E +E + +IDLV ++R++ K KEK R++
Sbjct: 58 TIFAA-GSTIRAQERSEDLRTAIDLVYDKLERQISKYKEKLVQRHRNLMN---------- 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
EN + +SEE ++IV+ K F + P+T EAI +E + H+FY F N +T +
Sbjct: 107 ----ENFLEQKSEEVVHE--NKIVKTKKFPLKPITPEEAIIDMELLGHNFYVFINSQTMD 160
Query: 279 INIVYKRKAGGYGVIIP 295
+N++YKR GGYG+I P
Sbjct: 161 VNVIYKRNEGGYGLIEP 177
>gi|228476605|ref|ZP_04061287.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius SK126]
gi|340398184|ref|YP_004727209.1| ribosomal subunit interface protein, 30S ribosomal protein S30AE
family [Streptococcus salivarius CCHSS3]
gi|387761950|ref|YP_006068927.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius 57.I]
gi|387783447|ref|YP_006069530.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius JIM8777]
gi|418017206|ref|ZP_12656765.1| ribosomal subunit interface protein, 30S ribosomal protein S30AE
family [Streptococcus salivarius M18]
gi|421451738|ref|ZP_15901099.1| Ribosome-associated factor Y [Streptococcus salivarius K12]
gi|228251800|gb|EEK10865.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius SK126]
gi|338742177|emb|CCB92682.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius CCHSS3]
gi|338744329|emb|CCB94695.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius JIM8777]
gi|339292717|gb|AEJ54064.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius 57.I]
gi|345527899|gb|EGX31207.1| ribosomal subunit interface protein, 30S ribosomal protein S30AE
family [Streptococcus salivarius M18]
gi|400182169|gb|EJO16431.1| Ribosome-associated factor Y [Streptococcus salivarius K12]
Length = 182
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 114/198 (57%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K V K+ + +E++ R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSK-VEKYFNEDQELNARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TIPTGS-VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIARKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+V AD +E+ ++ E+VR K E+ P+ V EAI Q+E + HDF+ + + E
Sbjct: 107 GEVF--SADFNNEQVEEAPAVEVVRTKNIELKPMDVEEAILQMELLGHDFFIYTDSEDHT 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++YKR+ G YG+I K
Sbjct: 165 TNVLYKREDGNYGLIEAK 182
>gi|224166377|ref|XP_002338923.1| predicted protein [Populus trichocarpa]
gi|222873939|gb|EEF11070.1| predicted protein [Populus trichocarpa]
Length = 93
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 60/101 (59%), Gaps = 17/101 (16%)
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
GKGPRIR+ EDAE + + KLRKIK+KESDHGRHM
Sbjct: 1 MGKGPRIRK----------------EDAEKSKQVLIWCRQLFN-KLRKIKDKESDHGRHM 43
Query: 207 KGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFF 247
KGFN+LKVREP++Q VENDAD S+ +DD+ + E+ F
Sbjct: 44 KGFNKLKVREPMSQEVENDADTVSQRKDDDNLGEVGLFNIF 84
>gi|390457187|ref|ZP_10242715.1| hypothetical protein PpeoK3_24499 [Paenibacillus peoriae KCTC 3763]
Length = 184
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 16/196 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-IRRCE 157
+ L ++G+ +E+TD +K++V++K S L + D + G R + E
Sbjct: 1 MNLTVRGQQIEVTDALKDYVDKK-------FSRLEKYFDAPPTSDGSVTLSTTRDLHTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ V+RAE++++ +YASID V ++R++RK K K + R L V +P
Sbjct: 54 VTI-PLPGLVLRAEDESDDMYASIDAVVDKLERQIRKNKTKLNRKFRQKGSLKTLFVEDP 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
VV V + E D E+VR K F + P+ V EAI Q+ V H+F+ F N +
Sbjct: 113 AGNVV-----VAEDAELDEL--EVVRTKRFLLKPMDVEEAILQMNMVGHNFFVFANIDNE 165
Query: 278 EINIVYKRKAGGYGVI 293
E+++VYKR G YG+I
Sbjct: 166 EVSVVYKRNDGKYGLI 181
>gi|333372656|ref|ZP_08464580.1| ribosomal subunit interface protein [Desmospora sp. 8437]
gi|332971718|gb|EGK10666.1| ribosomal subunit interface protein [Desmospora sp. 8437]
Length = 215
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 113/203 (55%), Gaps = 25/203 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K ++G N+E+T ++++V +K+G+ + K+ S E +V L V E +
Sbjct: 33 MKYNVRGNNIEVTAALRDYVVKKLGR-LEKYFDSTAATEANVSLGVFRDE-------HKV 84
Query: 157 EVTL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ F +VRAEE +E +YASID V ++R++RK K K NR +
Sbjct: 85 EVTVPFPGL--LVRAEEASENMYASIDKVVEKLERQIRKYKTK----------VNRKFRQ 132
Query: 216 EPVTQVVENDA--DVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ + ++N +++ + DD E+VR K F + P+ EAI Q++ + H+FY F N
Sbjct: 133 DGTIRNLDNGITPELEMDRSDDGGEFEVVRTKRFNLKPMDAEEAILQMDLLGHNFYVFSN 192
Query: 274 EETGEINIVYKRKAGGYGVIIPK 296
T ++N+VYKRK G YG+I P+
Sbjct: 193 AVTDQVNVVYKRKDGRYGLIEPE 215
>gi|379737448|ref|YP_005330954.1| 30S ribosomal protein S30P [Blastococcus saxobsidens DD2]
gi|378785255|emb|CCG04928.1| SSU ribosomal protein S30P [Blastococcus saxobsidens DD2]
Length = 228
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 24/212 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
++++++G+N+E+ + + HVE+KVG+ + L R +DV L K PR +
Sbjct: 1 MEIVVRGRNVEVPEHYRQHVEDKVGQLERFDTKLSR-IDVELF-----HEKNPRQSASCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMKGFNRLK 213
R E+TL K VVRAE YA++DL S + +LR+ ++ HGR RL
Sbjct: 55 RVEITLRGKG-PVVRAEAAGPDFYAALDLASGKLDNRLRRAADRRRVHHGRRTPASVRLN 113
Query: 214 VRE--------PVTQVVENDADVQS----EEEDDNFVDEIVRMKFFEMPPLTVSEAIEQL 261
P+ Q ++ D ++ S E D++ +IVR K P+TV +A+ ++
Sbjct: 114 GAALDAGHSELPIEQQLQLDRELASGPHVTELDEHLPGQIVREKHHPATPMTVDQALHEM 173
Query: 262 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
E V HDF+ F+ +TG+ +VY+R A YG+I
Sbjct: 174 ELVGHDFFLFQCADTGQPTVVYRRHAYDYGLI 205
>gi|374583721|ref|ZP_09656815.1| ribosome-associated protein Y (PSrp-1) [Desulfosporosinus youngiae
DSM 17734]
gi|374419803|gb|EHQ92238.1| ribosome-associated protein Y (PSrp-1) [Desulfosporosinus youngiae
DSM 17734]
Length = 176
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 104/195 (53%), Gaps = 25/195 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GK++ELTD +K +V ++VGK + K+S +V V L V R EVT
Sbjct: 5 IRGKHIELTDALKEYVMKRVGK-LAKYSDEFMDVQVTLLVERDR-------HRVEVT--A 54
Query: 163 KKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+G ++R EE+ E +Y+SID+V ++R++ K + + + R T+V
Sbjct: 55 PLNGMILRGEEETEDMYSSIDMVVEKLERQIDKYRTRINKRMR--------------TKV 100
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+++ D +E+VR K F P++V EAI Q+ V H F+ F N E+ E+N+
Sbjct: 101 LKDHDSKHPVAAADEPREEVVRHKKFSAKPMSVEEAIMQMNLVGHSFFVFTNSESQEMNV 160
Query: 282 VYKRKAGGYGVIIPK 296
VY R G YG++ P+
Sbjct: 161 VYLRNNGDYGLLQPQ 175
>gi|357236409|ref|ZP_09123752.1| putative Ribosome-associated factor Y [Streptococcus criceti HS-6]
gi|356884391|gb|EHI74591.1| putative Ribosome-associated factor Y [Streptococcus criceti HS-6]
Length = 182
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 110/198 (55%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++N+VE K+ K + K+ + +E++ +++++ + + EV
Sbjct: 2 IKFSIRGENIEVTDAIRNYVESKLAK-IEKYFNQSQELNAKVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLVS I+R++RK K K + R + E V
Sbjct: 57 TIPVGSI-TLRAEDVSQDLYGSIDLVSDKIERQIRKNKTKIAKKHREKVATGEVFSAEFV 115
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ VE + + IVR K ++ P+ EAI Q++ + HDF+ + + E G
Sbjct: 116 AEAVEEVPEAK-----------IVRTKNIDLKPMDAEEAILQMDLLGHDFFIYTDAEDGT 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++Y+R+ G +G+I K
Sbjct: 165 TNVIYRREDGDFGLIEAK 182
>gi|322373963|ref|ZP_08048498.1| ribosomal subunit interface protein [Streptococcus sp. C150]
gi|419707524|ref|ZP_14235007.1| Ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius PS4]
gi|321277335|gb|EFX54405.1| ribosomal subunit interface protein [Streptococcus sp. C150]
gi|383282674|gb|EIC80655.1| Ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius PS4]
Length = 182
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 115/198 (58%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ + +E++ R++++ GK ++ EV
Sbjct: 2 IKYSIRGENIEVTEALRDYVENKLSK-IEKYFNEDQELNARVNLKIYR-GKTAKV---EV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T ++RAE+ ++ +Y SIDLV I+R++RK K K + K RE V
Sbjct: 57 TIPTGS-VILRAEDISQDMYGSIDLVVDKIERQIRKNKTKIA-----------RKHREKV 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ D EE ++ E+VR K E+ P+ V EAI Q+E + HDF+ + + E
Sbjct: 105 STGEVFSVDFNKEEVEEAPSIEVVRTKNIELKPMDVEEAILQMELLSHDFFIYADSEDHT 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++YKR+ G YG+I K
Sbjct: 165 TNVLYKREDGNYGLIEAK 182
>gi|381182379|ref|ZP_09891189.1| ribosomal subunit interface protein [Listeriaceae bacterium TTU
M1-001]
gi|380317722|gb|EIA21031.1| ribosomal subunit interface protein [Listeriaceae bacterium TTU
M1-001]
Length = 184
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 107/200 (53%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T+ ++N+VE+K+ K + + V V L V + K E
Sbjct: 2 LKYNIRGENIEVTEPIRNYVEKKIDKLERYFTEVPDANVHVNLKVYSDKNAK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLK 213
VT+ + V+RAEE + +YASIDL++ ++R++RK + K D G F +
Sbjct: 56 VTI-PLPNLVLRAEETSGDLYASIDLIADKLERQIRKHKTKVNRKMRDKGAQQDFFAFGE 114
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ E EN++D+ EIVR K F++ P+ EA+ Q+ + H FY + +
Sbjct: 115 ISESAPD--ENESDL-----------EIVRTKQFDLKPMDSEEAVLQMNLLGHSFYVYTD 161
Query: 274 EETGEINIVYKRKAGGYGVI 293
E+ NIVY+RK G YG+I
Sbjct: 162 AESDGTNIVYRRKDGKYGLI 181
>gi|363899704|ref|ZP_09326212.1| hypothetical protein HMPREF9625_00872 [Oribacterium sp. ACB1]
gi|361958002|gb|EHL11305.1| hypothetical protein HMPREF9625_00872 [Oribacterium sp. ACB1]
Length = 175
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 26/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I G+ + LT+ +KN VE+K+GK + K +V LS + +++ EV
Sbjct: 1 MKFSITGRTISLTEGLKNMVEKKLGK-LDKFFQADTPCNVTLSTQKD-------MQKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG-FNRLKVREP 217
T+ K V+RAEE E +Y SIDLV +++R++RK K+K +H F
Sbjct: 53 TI-PVKGSVIRAEESTEDMYQSIDLVVDVLERQIRKYKDKLI--AKHQSSSFTA------ 103
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
A ++ E D +IVR K ++ P+T EA Q+E + H F+ F N ++G
Sbjct: 104 --------AFLEEAAEYDEEEIKIVRTKQIDLKPMTPEEACLQMELLGHSFFVFLNGDSG 155
Query: 278 EINIVYKRKAGGYGVIIP 295
++N+VYKRK YG+I P
Sbjct: 156 KVNVVYKRKTKSYGLIEP 173
>gi|395208365|ref|ZP_10397606.1| ribosomal subunit interface protein [Oribacterium sp. ACB8]
gi|394705946|gb|EJF13470.1| ribosomal subunit interface protein [Oribacterium sp. ACB8]
Length = 192
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 106/200 (53%), Gaps = 26/200 (13%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
S +K I G+ + LT+ +KN VE+K+GK + K +V LS + +++
Sbjct: 16 SIMKFSITGRTISLTEGLKNMVEKKLGK-LDKFFQADTPCNVTLSTQKD-------MQKI 67
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG-FNRLKVR 215
EVT+ K V+RAEE E +Y SIDLV +++R++RK K+K +H F
Sbjct: 68 EVTIPVK-GSVIRAEESTEDMYQSIDLVVDVLERQIRKYKDKLI--AKHQSSSFTA---- 120
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
A ++ E D +IVR K ++ P+T EA Q+E + H F+ F N +
Sbjct: 121 ----------AFLEEAAEYDEEEIKIVRTKQIDLKPMTPEEACLQMELLGHSFFVFLNGD 170
Query: 276 TGEINIVYKRKAGGYGVIIP 295
+G++N+VYKRK YG+I P
Sbjct: 171 SGKVNVVYKRKTKSYGLIEP 190
>gi|409387489|ref|ZP_11239704.1| Ribosomal subunit interface protein [Lactococcus raffinolactis
4877]
gi|399205375|emb|CCK20619.1| Ribosomal subunit interface protein [Lactococcus raffinolactis
4877]
Length = 183
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 110/198 (55%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K I+G+N+E+TD+++++VEEK+ K ++ L V++++ + +
Sbjct: 2 IKFNIRGENIEVTDSIRSYVEEKISKLEKYFTENQELTAYVNLKVY--------AEKTSK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ K+ +RAE+ ++ +Y S+DLV ++R++RK K K H+
Sbjct: 54 VEVTI-PAKNITLRAEDTSQELYGSVDLVQEKLERQIRKYKTKVQKKRNHI--------- 103
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+V E D+ EEE + EIVR K ++ P+ EA+ Q++ +DHDF+ F + E
Sbjct: 104 -ATGKVFEIFVDLAPEEEIEESNIEIVRTKNIDLKPMDAEEAVLQMDLIDHDFFIFTDGE 162
Query: 276 TGEINIVYKRKAGGYGVI 293
TG +IVY+R+ G G+I
Sbjct: 163 TGATSIVYRREDGNIGLI 180
>gi|241894821|ref|ZP_04782117.1| ribosome-associated inhibitor protein Y [Weissella
paramesenteroides ATCC 33313]
gi|241871942|gb|EER75693.1| ribosome-associated inhibitor protein Y [Weissella
paramesenteroides ATCC 33313]
Length = 238
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 129/245 (52%), Gaps = 29/245 (11%)
Query: 64 SSFFGPFKQITVMRPTKVHTKPLPV-----------RMSWDGPLSSVKLIIQGKNLELTD 112
++FF ++ +T+ P + + V + S G ++ ++G+N+E+TD
Sbjct: 4 NAFFFCYQYVTIYLPIGYRNESIKVYKIKILGILSYKFSQTGDRIMLEFKVRGENIEITD 63
Query: 113 TVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR 169
+ ++E+++ + + + + V+VR S + G F + EVT+ + ++R
Sbjct: 64 AMSEYIEKRISRLERYLNTEASYIARVNVR-SYKEGTF-------KTEVTI-QLPYLLLR 114
Query: 170 AEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQ 229
AE+ +Y ++D VS ++R++RK K K + R KG+ L+ + + V+ A V+
Sbjct: 115 AEDTQTDMYQTVDFVSDKLERQIRKYKTKVNRKSRE-KGYKGLENTDFMA--VDPAAAVE 171
Query: 230 SEE-EDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAG 288
E EDD EIVR K ++ P+ V EA+ Q+E + H+F+ F++ ET +VYKR+ G
Sbjct: 172 EPEPEDDGL--EIVRTKHVDLKPMDVEEAVLQMELLGHEFFIFQDAETDLPAVVYKRRDG 229
Query: 289 GYGVI 293
Y ++
Sbjct: 230 KYALL 234
>gi|331701707|ref|YP_004398666.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
buchneri NRRL B-30929]
gi|406027257|ref|YP_006726089.1| ribosome-associated inhibitor protein Y [Lactobacillus buchneri
CD034]
gi|329129050|gb|AEB73603.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
buchneri NRRL B-30929]
gi|405125746|gb|AFS00507.1| ribosome-associated inhibitor protein Y [Lactobacillus buchneri
CD034]
Length = 188
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 109/194 (56%), Gaps = 19/194 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+N+E+T ++++VE+++ K + K+ + V L V + K EVT+
Sbjct: 6 IRGENIEVTQAIRDYVEKRISK-LEKYFEKDMKNTAHVNLKVYPDKQAK------VEVTI 58
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV-T 219
+ +RAEE + +YAS+DLV+ ++R++RK K K + R KGF L+ T
Sbjct: 59 -PLPYLTLRAEEMSNDLYASVDLVTDKLERQIRKYKTKVNRKSRE-KGFKNLEFAPAADT 116
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
E+D+D +S+ F ++VR K + P+ EAI Q++ + HDF+ + + ET I
Sbjct: 117 SASESDSDDESK-----F--QVVRTKQLALKPMDNEEAILQMDMLGHDFFIYEDAETSGI 169
Query: 280 NIVYKRKAGGYGVI 293
NIVY+R G YG+I
Sbjct: 170 NIVYRRNDGRYGLI 183
>gi|427414377|ref|ZP_18904567.1| ribosomal subunit interface protein [Veillonella ratti
ACS-216-V-Col6b]
gi|425714753|gb|EKU77756.1| ribosomal subunit interface protein [Veillonella ratti
ACS-216-V-Col6b]
Length = 176
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 102/199 (51%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKNLE+T ++ ++E++V K L R D V+ R E+
Sbjct: 1 MKVTVRGKNLEVTAALREYLEKRVDK-------LARYFDAPFDVQAV-LSVEKENRVVEL 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T F + G+V R +YASIDLV I R++ K K + + + GF +P
Sbjct: 53 TCFVE--GIVLRGVASNTDMYASIDLVVDKIVRQIHKYKTRLARRFKKEAGF------KP 104
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V E VQ EE +VR K F + P++V EAI Q+ V HDF+ F N ET
Sbjct: 105 DAYVPE--VPVQEEE------ISVVRRKHFAIRPMSVEEAIMQMNLVGHDFFMFYNAETE 156
Query: 278 EINIVYKRKAGGYGVIIPK 296
+N+VY+RK G YG+I P+
Sbjct: 157 VMNVVYRRKNGSYGLIEPE 175
>gi|347520960|ref|YP_004778531.1| hypothetical protein LCGT_0354 [Lactococcus garvieae ATCC 49156]
gi|385832323|ref|YP_005870098.1| hypothetical protein [Lactococcus garvieae Lg2]
gi|343179528|dbj|BAK57867.1| conserved hypothetical protein [Lactococcus garvieae ATCC 49156]
gi|343181476|dbj|BAK59814.1| conserved hypothetical protein [Lactococcus garvieae Lg2]
Length = 185
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 110/197 (55%), Gaps = 18/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N ELTD+++++VE+KVGK + K+ + EV ++++ + + EV
Sbjct: 2 IKYNIRGENFELTDSIRSYVEDKVGK-LEKYFNDGHEVTAYVNLKV----YSDKRYKAEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL-KVREP 217
T+ K+ +RAE+ A +YA+ID V ++R++RK K + NR K+ P
Sbjct: 57 TM-PAKNVTLRAEDTAADMYAAIDFVEEKLERQIRKYKTR----------VNRKSKINVP 105
Query: 218 VTQVVEND-ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
Q ++ A + EE + +IVR K + P+ EA+ Q++ + HDFY F + +T
Sbjct: 106 TGQAFGDEFAPLDEAEEVNEDQVKIVRTKHVSLKPMDAEEAVLQMDMLGHDFYIFTDADT 165
Query: 277 GEINIVYKRKAGGYGVI 293
N+VY+R+ G G+I
Sbjct: 166 DSTNVVYRREDGNIGLI 182
>gi|417998648|ref|ZP_12638864.1| ribosomal subunit interface protein [Lactobacillus casei T71499]
gi|410540489|gb|EKQ15002.1| ribosomal subunit interface protein [Lactobacillus casei T71499]
Length = 185
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 107/202 (52%), Gaps = 37/202 (18%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++ +VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRRYVEKRISKLNKFFGGSVTATAH------VNLKVYSDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 54 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDI- 110
Query: 216 EPVTQVVENDADVQSE----EEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
DA +E E+DDN +VR K + P+ EAI Q++ + H+F+ F
Sbjct: 111 ---------DATAPAEPKPAEDDDNLT--VVRTKRVSLKPMDSQEAILQMDMLGHNFFIF 159
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
+ +T +IVYKR+ G YG+I
Sbjct: 160 EDADTNGTSIVYKRRDGRYGLI 181
>gi|297622293|ref|YP_003703727.1| ribosomal subunit interface protein [Truepera radiovictrix DSM
17093]
gi|297163473|gb|ADI13184.1| ribosomal subunit interface protein [Truepera radiovictrix DSM
17093]
Length = 190
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 29/203 (14%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
G+N+E+TD ++ + EEK+ K H+V D ++ + G + EV L
Sbjct: 8 GRNIEVTDAMRAYAEEKLEKLERFSDHIV---DAKVVMSYATDGNPAMPAKVEVQL-NVP 63
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR--EPVTQVV 222
+G+VRAEE YA+ DLV ++R+LR+ KE+ RL R EP
Sbjct: 64 NGIVRAEESGPDTYAATDLVVEKLERQLRRFKER------------RLAKRNQEPPP--- 108
Query: 223 ENDADVQSEEEDDNFVDE-------IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+D DV E DE IVR+K M P++ +A Q+E + H F+ F N E
Sbjct: 109 -SDLDVAPMEGAGVAADESQEREPAIVRVKRHVMRPMSPEDAALQMEALGHAFFVFHNME 167
Query: 276 TGEINIVYKRKAGGYGVIIPKGN 298
T I+++Y+R G YG+I P N
Sbjct: 168 TDTISVLYRRHDGDYGLIEPANN 190
>gi|319948919|ref|ZP_08023027.1| hypothetical protein ES5_05987 [Dietzia cinnamea P4]
gi|319437416|gb|EFV92428.1| hypothetical protein ES5_05987 [Dietzia cinnamea P4]
Length = 233
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 34/226 (15%)
Query: 91 SWDGPLSS------VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRG 144
++DGP + ++ I+G+N+E+ D + + K+ K V K + L++ DV L
Sbjct: 13 TFDGPETDDPGTPEAQVTIRGRNVEVPDHFASRINTKLAK-VEKMAPLIQRFDVILL--- 68
Query: 145 GEFGKGPRI----RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES 200
PR+ +R E+T+ K GV RAE +T YA+++ + ++R++RK + +
Sbjct: 69 --HENNPRLAKVSQRVEITV-KGKPGVARAEAAEDTFYAALESAVAKLERQMRKARTRRK 125
Query: 201 -DHGRHMK-------GFNRLKVREPVTQVVENDADVQSEEEDDNFVD-----EIVRMKFF 247
H H + PV + D + E DD VD +IVR K
Sbjct: 126 ISHSGHRRPQSVAEATAELAADAAPVDAL---DQQLDGVEYDDG-VDASMPGQIVRRKEH 181
Query: 248 EMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ P++V EA+E++E V HDFY FR+ ETG +VY+R A YG+I
Sbjct: 182 DGTPMSVDEALEKMELVGHDFYLFRDAETGRATVVYRRHAFDYGLI 227
>gi|125975356|ref|YP_001039266.1| sigma 54 modulation protein / 30S ribosomal protein S30P
[Clostridium thermocellum ATCC 27405]
gi|256005498|ref|ZP_05430460.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
thermocellum DSM 2360]
gi|281419316|ref|ZP_06250331.1| ribosomal subunit interface protein [Clostridium thermocellum JW20]
gi|385777791|ref|YP_005686956.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
thermocellum DSM 1313]
gi|419724019|ref|ZP_14251112.1| ribosomal subunit interface protein [Clostridium thermocellum AD2]
gi|419726157|ref|ZP_14253180.1| ribosomal subunit interface protein [Clostridium thermocellum YS]
gi|125715581|gb|ABN54073.1| ribosomal subunit interface protein [Clostridium thermocellum ATCC
27405]
gi|255990553|gb|EEU00673.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
thermocellum DSM 2360]
gi|281406936|gb|EFB37199.1| ribosomal subunit interface protein [Clostridium thermocellum JW20]
gi|316939471|gb|ADU73505.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
thermocellum DSM 1313]
gi|380770209|gb|EIC04106.1| ribosomal subunit interface protein [Clostridium thermocellum YS]
gi|380779971|gb|EIC09676.1| ribosomal subunit interface protein [Clostridium thermocellum AD2]
Length = 177
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ + GKN+ +T+ +K +KVGK + K+ E + +SV+ K I EV
Sbjct: 1 MRFKVVGKNIVVTEALKEAAVKKVGK-LDKYFRRDAEATITMSVQ-----KNRHI--VEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVRE 216
T+ + G++RAEED+ +YASID V ++R++R+ K K + H ++ F +K
Sbjct: 53 TI-PFEGGLLRAEEDSPDMYASIDKVIDSLERQIRRNKTKLEKKVHDGSLR-FENIKF-- 108
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+D +V EE+ F E+VR K F + P+TV EAI Q+ + H F+ F N ET
Sbjct: 109 -------DDDEV---EEEPKF--EVVRTKKFAIKPMTVEEAILQMNLLGHQFFMFSNAET 156
Query: 277 GEINIVYKRKAGGYGVIIPK 296
E N+VY+RK G YG+I P+
Sbjct: 157 NEANVVYRRKDGNYGLIEPE 176
>gi|239636635|ref|ZP_04677637.1| ribosomal subunit interface protein [Staphylococcus warneri L37603]
gi|445060265|ref|YP_007385669.1| ribosomal subunit interface protein [Staphylococcus warneri SG1]
gi|239597990|gb|EEQ80485.1| ribosomal subunit interface protein [Staphylococcus warneri L37603]
gi|443426322|gb|AGC91225.1| ribosomal subunit interface protein [Staphylococcus warneri SG1]
Length = 191
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 108/196 (55%), Gaps = 12/196 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV-DVRLSVRGGEFGKGPRIRRCE 157
++ I G NL +TD ++N++EEK+GK +++ V V++ K E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNNVPNAVAHVKVKTYSNSTTK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K +RAEE + +YA +DL+++ ++R++RK K + + R +G + V E
Sbjct: 56 VTI-PLKDVTLRAEERHDDLYAGVDLITNKLERQVRKYKTRVNRKHRD-RGDQEVFVAE- 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
Q + +EE +DN + EI+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 113 -VQEAPPEEISGAEENNDNDI-EIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRETD 170
Query: 278 EINIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 171 GTSIVYRRKDGKYGLI 186
>gi|229164126|ref|ZP_04292062.1| Sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus
cereus R309803]
gi|228619362|gb|EEK76252.1| Sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus
cereus R309803]
Length = 180
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+GK + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLGK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 218 ---VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
T + +A V +E + E+VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GSVKTNFILPEA-VAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNA 158
Query: 275 ETGEINIVYKRKAGGYGVI 293
+T E N+VY RK G YG+I
Sbjct: 159 DTNETNVVYGRKDGKYGLI 177
>gi|172058434|ref|YP_001814894.1| sigma 54 modulation protein/ribosomal protein S30EA
[Exiguobacterium sibiricum 255-15]
gi|171990955|gb|ACB61877.1| sigma 54 modulation protein/ribosomal protein S30EA
[Exiguobacterium sibiricum 255-15]
Length = 187
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSH--LVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+NL++TD +K++VE+K+ K + + V L V + ++ EVT+
Sbjct: 5 IRGENLDVTDALKDYVEKKLEKLTRYFTTPTEAQTAYVNLKVNNEK-------QKVEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
+ ++RAE+ +YA+IDLV ++R++RK K K + GR G + E
Sbjct: 58 -PMPNLLLRAEDVNGDMYAAIDLVVDKLERQIRKHKTKINRRGRAKDG----GIGEYFKT 112
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+ +A+ EED+ + E+VR K F + P+ EAI Q++ + H F+ F + ETG N
Sbjct: 113 LEGPEAEAPVYEEDEAEL-ELVRTKRFTLKPMDTEEAILQMDMLGHTFFVFSDAETGNTN 171
Query: 281 IVYKRKAGGYGVIIPK 296
+VY+RK G YG+I P+
Sbjct: 172 VVYRRKDGRYGLIEPE 187
>gi|374340422|ref|YP_005097158.1| ribosomal subunit interface protein [Marinitoga piezophila KA3]
gi|372101956|gb|AEX85860.1| ribosomal subunit interface protein [Marinitoga piezophila KA3]
Length = 181
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 26/192 (13%)
Query: 106 KNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
KN+ELT +++++E EK+ + KH L+ ++R+ K + EVT
Sbjct: 8 KNIELTKALEDYLEKRMEKIDRMFKKHDDLLMGTEIRVE-------KDRETYKVEVTSHL 60
Query: 163 KKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K G + + EE +Y ID VS +RKL+K+K K +H N LK +PV
Sbjct: 61 KFKGSIFKVEERGTDLYEVIDKVSDAFERKLKKVKGKLQNHD----APNPLKDVKPV--- 113
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ ++ED+ F +I + K F+M ++ EAI QLE + H+F+ FRN E+ E+N+
Sbjct: 114 -------ELDDEDELF-SKIEKRKRFDMSMFSLEEAILQLELLGHEFFVFRNSESEEVNV 165
Query: 282 VYKRKAGGYGVI 293
+YKRK G G+I
Sbjct: 166 IYKRKDGTLGLI 177
>gi|392988942|ref|YP_006487535.1| ribosomal subunit interface protein [Enterococcus hirae ATCC 9790]
gi|392336362|gb|AFM70644.1| ribosomal subunit interface protein [Enterococcus hirae ATCC 9790]
Length = 186
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 107/191 (56%), Gaps = 13/191 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K + R G N +
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRET-GMNT----ADAAVLF 114
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
N+AD ++ E+D+ +D IVR K + P+ EA+ Q+ + H+F+ F + ET +IV
Sbjct: 115 NNEAD-DADHENDSELD-IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSIV 172
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 173 YRRKDGKYGLI 183
>gi|365903497|ref|ZP_09441320.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus
malefermentans KCTC 3548]
Length = 185
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 30/198 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD----VRLSVRGGEFGKGPRIRRCEV 158
I+G+N+E+T+ ++++VE+++ K + + VD V L V + K EV
Sbjct: 6 IRGENIEVTNAIRDYVEKRLNKL---EKYFEKNVDSTAHVNLKVYQNKTAK------VEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + +RAEE + +YAS+DLV+ ++R++RK K K + R KGF L
Sbjct: 57 TI-PLPYLTLRAEETSPDLYASVDLVTDKLERQIRKYKTKINRKSRE-KGFKNL------ 108
Query: 219 TQVVENDADVQSEEE---DDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
D QSEE+ +D E+VR K + P+ EAI Q++ + HDF+ + + +
Sbjct: 109 ------DFAPQSEEDSSNEDEKAIEVVRTKRVSLKPMDNEEAILQMDMLGHDFFVYEDSD 162
Query: 276 TGEINIVYKRKAGGYGVI 293
T ++IVY+R G YG+I
Sbjct: 163 TNGVSIVYRRNDGRYGLI 180
>gi|355681872|ref|ZP_09062160.1| hypothetical protein HMPREF9469_05197 [Clostridium citroniae
WAL-17108]
gi|354811283|gb|EHE95916.1| hypothetical protein HMPREF9469_05197 [Clostridium citroniae
WAL-17108]
Length = 176
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLV-REVDVRLSVRGGEFGKGPRIRRCE 157
++ I G+N+E+T +K VE+K+GK L+H EV V LS + ++ E
Sbjct: 1 MRYTITGRNIEVTPGLKAAVEKKIGK--LEHFFTPDTEVIVALSAQKDR-------QKIE 51
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K + +RAEE + +Y SIDLV +I+R++R+ ++K D + F++
Sbjct: 52 VTIPVKGN-TIRAEESSTDMYVSIDLVEEVIERQIRRYRKKLIDKKQAAVSFSQ------ 104
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
A ++ E+E + +IV+ K F + P EA Q+E + H+FY F N +T
Sbjct: 105 --------AFIEEEDEIQDDEIQIVKTKKFAIKPTIPEEACLQMEMLGHNFYVFLNADTD 156
Query: 278 EINIVYKRKAGGYGVIIP 295
++N+VYKRK G YG+I P
Sbjct: 157 QVNVVYKRKNGTYGLIEP 174
>gi|424715324|ref|YP_007016039.1| Uncharacterized protein SE_0534 [Listeria monocytogenes serotype 4b
str. LL195]
gi|424014508|emb|CCO65048.1| Uncharacterized protein SE_0534 [Listeria monocytogenes serotype 4b
str. LL195]
Length = 232
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 12/206 (5%)
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEF 147
+ + G ++ +K I+G+N+E+T+ ++++VE+K+ K + D + V +
Sbjct: 36 ILFYFKGGIAMLKYNIRGENIEVTEPIRDYVEKKIDKL---ERYFTETPDANVHVNLKVY 92
Query: 148 GKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK 207
+ + EVT+ + V+RAEE + +YASIDL+ ++R++RK K K + R K
Sbjct: 93 S--DKNAKVEVTI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-K 148
Query: 208 GFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHD 267
G R + + EE + +F EIVR K F + P+ EA+ Q+ + H
Sbjct: 149 GAER-----DYFAYSDVNGSTPPEENEGDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHS 203
Query: 268 FYGFRNEETGEINIVYKRKAGGYGVI 293
FY + + ET NIVY RK G YG+I
Sbjct: 204 FYVYTDAETNGTNIVYSRKDGKYGLI 229
>gi|398308474|ref|ZP_10511948.1| ribosome-associated sigma 54 modulation protein [Bacillus
mojavensis RO-H-1]
Length = 189
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 105/202 (51%), Gaps = 28/202 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTSALKDHVEKKIGKLERYFEQSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PV 218
+R+E E +Y +IDL ++ ++R++RK H NR K RE P
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRK----------HKTKVNR-KFREQGLPK 106
Query: 219 TQVV-----ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ + + D VQ E E+D + EIVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 107 SALANGLGSDTDIAVQDEIEEDESL-EIVRQKRFNLKPMDNEEAILQMNMLGHNFFVFTN 165
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
ET N+VY+R G YG+I P
Sbjct: 166 AETNLTNVVYRRNDGKYGLIEP 187
>gi|334342138|ref|YP_004547118.1| ribosomal subunit interface protein [Desulfotomaculum ruminis DSM
2154]
gi|334093492|gb|AEG61832.1| ribosomal subunit interface protein [Desulfotomaculum ruminis DSM
2154]
Length = 173
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 107/198 (54%), Gaps = 27/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKN+E+T ++++VE+++GK + + + E L V G ++ EV
Sbjct: 1 MKVQVRGKNIEVTPALRDYVEKRLGK-LDRFLDNMGEAMATLVVEGDS-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE + +Y+S+DLV I+R++ + K K NR R +
Sbjct: 53 TIPVNGM-LLRGEEATDDMYSSVDLVVEKIERQISRYKGK----------LNRRNGRSQM 101
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
E+ +D + + ++R K F + P+ + EA+ Q+ + HDF+ F N ET +
Sbjct: 102 EFSAEDKSDAEEPK--------VLRTKRFAIKPMPLDEAVMQMNLLGHDFFVFSNAETEQ 153
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK G YG+I P+
Sbjct: 154 VNVVYKRKDGNYGLIEPE 171
>gi|420143744|ref|ZP_14651241.1| Hypothetical protein Y7C_89176 [Lactococcus garvieae IPLA 31405]
gi|391856615|gb|EIT67155.1| Hypothetical protein Y7C_89176 [Lactococcus garvieae IPLA 31405]
Length = 185
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 110/197 (55%), Gaps = 18/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N ELTD+++++VE+KVGK + K+ + EV ++++ + + EV
Sbjct: 2 IKYNIRGENFELTDSIRSYVEDKVGK-LEKYFNDGHEVTAYVNLKV----YSDKRYKAEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL-KVREP 217
T+ K+ +RAE+ A +YA+ID V ++R++RK K + NR K+ P
Sbjct: 57 TV-PAKNVTLRAEDTAADMYAAIDFVEEKLERQIRKYKTR----------VNRKSKINVP 105
Query: 218 VTQVVEND-ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
Q ++ A + EE + +IVR K + P+ EA+ Q++ + HDFY F + +T
Sbjct: 106 TGQAFGDEFAPLDEAEEVNEDQVKIVRTKHVSLKPMDAEEAVLQMDMLGHDFYIFTDADT 165
Query: 277 GEINIVYKRKAGGYGVI 293
N+VY+R+ G G+I
Sbjct: 166 DSTNVVYRREDGNIGLI 182
>gi|156743010|ref|YP_001433139.1| sigma 54 modulation protein/ribosomal protein S30EA [Roseiflexus
castenholzii DSM 13941]
gi|156234338|gb|ABU59121.1| sigma 54 modulation protein/ribosomal protein S30EA [Roseiflexus
castenholzii DSM 13941]
Length = 198
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 114/207 (55%), Gaps = 22/207 (10%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR---- 152
+ + LI+ +N +L+D + H+E+K+ S L R +D R+ E + R
Sbjct: 4 ACMNLIVNSRNGKLSDRQRQHIEQKL-------SRLDRYLD-RIDKVTVEHMEEMRRNEG 55
Query: 153 -IRRCEVTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFN 210
+ R +VT+ HGV VRAE A +YA+ID V +QR++ + K+K H +
Sbjct: 56 NVHRVQVTV-VGDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDK------HWRRGR 108
Query: 211 RLKVREPVTQVV-ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFY 269
+ + + + E +A + +++ IVR K F++ P+ EA+EQ+E + H F+
Sbjct: 109 LRRQGGQIVEALPEMNAAAPAPIDEEEQRPRIVRTKEFQVKPMYSDEAVEQMELLGHSFF 168
Query: 270 GFRNEETGEINIVYKRKAGGYGVIIPK 296
F++ +TG++N++Y+R+ G YG+I+P+
Sbjct: 169 IFQDADTGKLNVLYRRQDGNYGLIVPE 195
>gi|336054488|ref|YP_004562775.1| ribosome-associated inhibitor protein Y [Lactobacillus
kefiranofaciens ZW3]
gi|333957865|gb|AEG40673.1| Ribosome-associated inhibitor protein Y [Lactobacillus
kefiranofaciens ZW3]
Length = 180
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 109/195 (55%), Gaps = 20/195 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELTQDVIAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V +P
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNKKSRE-KGLQDFFVEQP- 113
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
Q E++ F +IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 114 ----------QEEKKPSEF--DIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETNG 161
Query: 279 INIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 162 TSVVYRRNDGRYGLI 176
>gi|347530734|ref|YP_004837497.1| ribosome-associated protein Y (PSrp-1) [Roseburia hominis A2-183]
gi|345500882|gb|AEN95565.1| ribosome-associated protein Y (PSrp-1) [Roseburia hominis A2-183]
Length = 176
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 108/199 (54%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I G+N+ELT+ +K VE+K+ K + K+ +V V LSV ++ EV
Sbjct: 1 MRIKITGRNIELTEGLKAAVEDKLNK-LEKYFTPDTDVYVTLSVEKER-------QKAEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +R+E+ + +Y SIDLV +I+R+L+K + K ++ +
Sbjct: 53 TI-PAKGNYIRSEQVSNDMYVSIDLVEEVIERQLKKYRTKLVTKQQNASAVFK------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ ++ AD ED+ +I+R K F M P+ +A Q+E + HDF+ F N ET +
Sbjct: 105 QEFLDGAAD-----EDEEI--KIIRTKKFSMKPMYPEDACVQMELLGHDFFVFINAETED 157
Query: 279 INIVYKRKAGGYGVIIPKG 297
+N+VYKRK YG+I P+
Sbjct: 158 VNVVYKRKGNTYGLIEPEN 176
>gi|451344299|ref|ZP_21913359.1| ribosomal subunit interface protein [Eggerthia catenaformis OT 569
= DSM 20559]
gi|449337013|gb|EMD16181.1| ribosomal subunit interface protein [Eggerthia catenaformis OT 569
= DSM 20559]
Length = 176
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 112/198 (56%), Gaps = 28/198 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLV--REVDVRLSVRGGEFGKGPRIRRC 156
+K+ ++GKN+E+TD++K V +K+ K +L+ E++ ++ VR +G ++
Sbjct: 1 MKVNLRGKNIEITDSIKEKVTKKLSKL---DKYLIAGEEIEAKVLVRTYPYG-----QKI 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVR 215
EVT+ T+ ++RAEE E +Y +IDL+ ++R++RK K + S + K FN
Sbjct: 53 EVTIPTR-LVLLRAEETNEDLYDAIDLIIDKLERQIRKNKTRLSRKNKDNKLAFN----- 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
V + ++ EED E+V+ K P+ + EA+ Q+E + H F+ + + E
Sbjct: 107 ------VASLGELPEVEED-----EVVKTKAISPKPMDLEEAVMQMELIGHSFFVYEDVE 155
Query: 276 TGEINIVYKRKAGGYGVI 293
T ++++VYKR GGYG++
Sbjct: 156 TNKVSVVYKRTHGGYGLL 173
>gi|206901298|ref|YP_002251125.1| ribosomal subunit interface protein [Dictyoglomus thermophilum
H-6-12]
gi|206740401|gb|ACI19459.1| ribosomal subunit interface protein [Dictyoglomus thermophilum
H-6-12]
Length = 179
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 108/190 (56%), Gaps = 23/190 (12%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
KN+ +TD ++ + E+K+ + + + + ++V S ++ G + R EVT+ K +
Sbjct: 8 KNVNITDNLQQYAEKKLSR-LSRFFDNIENIEVLFS--EEDWKDGSKRHRVEVTI--KAN 62
Query: 166 G-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
G +++A E + SIDLV ++ +L+++KEK D GR + +RE +
Sbjct: 63 GRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKLVDKGRRAES-----IREIL------ 111
Query: 225 DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYK 284
A+ + EE+ ++V++K F + P+ V EAI Q+E + HDF+ FR+ ET I +VYK
Sbjct: 112 -AEKEVEEKP-----QVVKVKRFLLKPMDVEEAILQMELLGHDFFIFRDAETDRIGVVYK 165
Query: 285 RKAGGYGVII 294
RK G YG+II
Sbjct: 166 RKDGKYGLII 175
>gi|403383560|ref|ZP_10925617.1| hypothetical protein KJC30_02635 [Kurthia sp. JC30]
Length = 187
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 20/195 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++++VE K+ K + E+D +V + + + EVT+
Sbjct: 6 IRGENIEVTPAIRDYVEGKISKL---ERYFNNEMDATANVNLKVYND--KRTKVEVTIPM 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG----FNRLKVREPV 218
K+ +RAEE + +YA ID + ++R++RK K K + R +G F EP
Sbjct: 61 KRL-TLRAEERNDDLYAGIDAIIDKLERQIRKHKTKINRKFRDREGVGLYFATTPPPEPE 119
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T VE E ED+ ++VR K F + P+ EAI Q+ + HDFY F + ET E
Sbjct: 120 TDNVE-------EVEDEL---QVVRTKQFSLKPMDDEEAILQMNLLGHDFYIFTDAETNE 169
Query: 279 INIVYKRKAGGYGVI 293
NIVY+RK G YG+I
Sbjct: 170 TNIVYRRKDGKYGLI 184
>gi|374298114|ref|YP_005048305.1| ribosomal subunit interface protein [Clostridium clariflavum DSM
19732]
gi|359827608|gb|AEV70381.1| ribosomal subunit interface protein [Clostridium clariflavum DSM
19732]
Length = 176
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 112/197 (56%), Gaps = 23/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+ GKN+E+T+ +K +KVGK + K + E + +SV+ K +I EV
Sbjct: 1 MKFIVSGKNIEVTEALKEKAIKKVGK-LEKFFNDDTEAHITMSVQ-----KNRQI--VEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K G++RA+E+ E +YASID V ++ +LR+ K K S H G LK
Sbjct: 53 TI-PFKGGLLRAQEENEDMYASIDKVVDSLEGQLRRYKTKISKK-YHESG---LKF---- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+D +++ EE+ + ++VR K F + P+TV EAI Q+ + H F+ F N +T E
Sbjct: 104 -----DDTNIEEHEEETDEF-KVVRSKKFPIKPMTVEEAILQMNMLGHSFFMFLNADTME 157
Query: 279 INIVYKRKAGGYGVIIP 295
N+VY+RK G YG+I P
Sbjct: 158 ANVVYRRKDGNYGLIEP 174
>gi|297618039|ref|YP_003703198.1| ribosomal subunit interface protein [Syntrophothermus lipocalidus
DSM 12680]
gi|297145876|gb|ADI02633.1| ribosomal subunit interface protein [Syntrophothermus lipocalidus
DSM 12680]
Length = 180
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 111/201 (55%), Gaps = 26/201 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ ++GKN+ELTD ++ +VE+++ K + + ++E V LSV G R EV
Sbjct: 1 MRIEVRGKNIELTDALREYVEKRLSK-LERFIDDLKEAQVTLSVEGD-------THRVEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
T+ +GV+ R EE + +Y+S+DLV +++++ K K + R + G + E
Sbjct: 53 TI--PLNGVILRGEEKTDDMYSSVDLVVDKLEKQIDKYKTRIYRRYREV-GLKKGATGEA 109
Query: 217 -PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
PV +EE+ ++VR K F + P+ V EAI Q+ + H F+ F N E
Sbjct: 110 PPV------------KEEEKGEAAKVVRTKRFALKPMDVEEAIMQMNLLGHSFFVFFNVE 157
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
+ E+N++Y+R+ G YG+I P+
Sbjct: 158 SAEVNVLYRRRDGNYGLIEPE 178
>gi|383755056|ref|YP_005433959.1| putative sigma 54 modulation protein [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381367108|dbj|BAL83936.1| putative sigma 54 modulation protein [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 180
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 103/191 (53%), Gaps = 20/191 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T +++ +VE++VGK V K+ V ++ V L+V KG I EVT+
Sbjct: 6 VRGKNIEITPSLREYVEKRVGK-VTKYFENVGDISVLLTV-----SKGRHI--VEVTVPV 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +Y SIDLV ++R++ K K K + R GF ++ P +
Sbjct: 58 QGGILLRGEEATMDMYTSIDLVVEKLERQIHKQKTKLARRFRG-GGFKAEALKTPAVEGP 116
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+D + Q + + P+ V EAI Q+ ++H+F+ FRN ET ++ +V
Sbjct: 117 ADDEEYQVVKTKKF-----------VVKPMDVQEAIMQMNLLNHNFFVFRNAETEDVQVV 165
Query: 283 YKRKAGGYGVI 293
YKR G YG+I
Sbjct: 166 YKRTDGNYGLI 176
>gi|295395809|ref|ZP_06805997.1| S30AE family protein [Brevibacterium mcbrellneri ATCC 49030]
gi|294971344|gb|EFG47231.1| S30AE family protein [Brevibacterium mcbrellneri ATCC 49030]
Length = 230
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 38/223 (17%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR-- 154
S V ++++G+N+ L+++ ++HVE+KV K +R V+V L+ P +R
Sbjct: 11 SIVDIVVKGRNVTLSESFRSHVEDKVSKVEQLAPRALR-VEVVLT-------HDPNVRQP 62
Query: 155 ----RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE--SDHGRHMKG 208
R E+T+ K V+RAE A YA++DL + + +LR+ ++++ S G+H
Sbjct: 63 ENTERIEITVIAKG-PVLRAEATASDKYAALDLAWAKLLERLRRARDRQKISRQGKHRSA 121
Query: 209 -----FNRLKVREPVTQVVENDADVQSE-------------EEDDNFVDEIVRMKFFEMP 250
++V +PV EN+ D + E E D+ V ++R K F
Sbjct: 122 STAEVLASMEVVDPVIPS-ENEKDEKRETPQNIDQTGGRVPSEGDSPV--VLREKTFAAT 178
Query: 251 PLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
P+ + EAI ++E V HDFY F +E + + ++VYKR+ YGVI
Sbjct: 179 PIALDEAINRMEMVGHDFYLFIDEASTKPSVVYKRRGWSYGVI 221
>gi|331270419|ref|YP_004396911.1| ribosomal subunit interface protein [Clostridium botulinum
BKT015925]
gi|329126969|gb|AEB76914.1| ribosomal subunit interface protein [Clostridium botulinum
BKT015925]
Length = 184
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 115/202 (56%), Gaps = 31/202 (15%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
++K+I GKN+E+T ++ VE K+ K + K+ +V LSV+ K +I E
Sbjct: 8 NIKVI--GKNIEVTKGLREAVERKLSK-LDKYFDPNVKVITTLSVQ-----KSRQI--VE 57
Query: 158 VTL-FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLK 213
VT+ F +GV+ RAEE +YA+IDLV ++R++RK K K + HG +K
Sbjct: 58 VTIPF---NGVILRAEEANIDMYAAIDLVLEKLERQIRKQKTKLEKRKHGDALKF----- 109
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ + + V DA DN +IV+ K F + P++ EA+ Q+E + H+F+ FRN
Sbjct: 110 --QFIPEYVPKDAQ-------DNVESKIVKTKRFAIKPMSNEEAVLQMELLGHNFFVFRN 160
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
+T E+N++YKRK G YG+I P
Sbjct: 161 SDTDEVNVLYKRKDGQYGLIEP 182
>gi|385266426|ref|ZP_10044513.1| Sigma 54 modulation protein / S30EA ribosomal protein [Bacillus sp.
5B6]
gi|385150922|gb|EIF14859.1| Sigma 54 modulation protein / S30EA ribosomal protein [Bacillus sp.
5B6]
Length = 188
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 21/198 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE K+GK V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVERKIGKLERYFEQSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKVREP 217
+R+E E +Y +IDL ++ ++R++RK + K D G F
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTKVNRKFRDQGLPKHYFEN------ 111
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V + VQ E EDD+ EIVR K F + P+ EAI Q+ + H+F+ F N ET
Sbjct: 112 -GSVADTGVAVQDEIEDDS--PEIVRQKRFNLKPMDNEEAILQMNMLGHNFFVFTNAETN 168
Query: 278 EINIVYKRKAGGYGVIIP 295
N+VY+R G YG+I P
Sbjct: 169 LTNVVYRRNDGKYGLIEP 186
>gi|307243698|ref|ZP_07525838.1| ribosomal subunit interface protein [Peptostreptococcus stomatis
DSM 17678]
gi|306492907|gb|EFM64920.1| ribosomal subunit interface protein [Peptostreptococcus stomatis
DSM 17678]
Length = 183
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 110/195 (56%), Gaps = 15/195 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + GK ++LTD + ++++K K L E ++R++V + K ++ EV
Sbjct: 1 MKITVSGKKIKLTDGITGYIDKKFSKL---EKLLDPEAELRVTVSANKKEK----QKVEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
TL + VVRAE+ + +Y++IDLVS + R++ K K K G G + ++ E
Sbjct: 54 TLDSINGHVVRAEDVQDDLYSAIDLVSDKLNRQIVKYKNKFKTRG---AGNSTIRF-ENF 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
++VE + D+ D V E R K F + P++ EA+ Q+ + HDF+ F++++T E
Sbjct: 110 DELVEEEIDILPG--DSELVFE--RKKRFNLRPMSAEEAVLQMNLLGHDFFLFKDQDTFE 165
Query: 279 INIVYKRKAGGYGVI 293
+ +VY+R GGYG+I
Sbjct: 166 VCLVYRRGDGGYGLI 180
>gi|158321508|ref|YP_001514015.1| sigma 54 modulation protein/ribosomal protein S30EA [Alkaliphilus
oremlandii OhILAs]
gi|158141707|gb|ABW20019.1| sigma 54 modulation protein/ribosomal protein S30EA [Alkaliphilus
oremlandii OhILAs]
Length = 181
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+I+ G+N+ +TD +++ VE K+ K + K + E LSV+ K +I EV
Sbjct: 1 MKVIVSGRNMNITDALRDTVESKLSK-LDKFFYNELEAQATLSVQ-----KNRQI--IEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG--FNRLKVRE 216
T+ ++R EE + +Y+SID + R+LRK K K + K F + E
Sbjct: 53 TI-PINGSILRVEEATDDMYSSIDNAVDKLTRQLRKQKSKLENRNSKYKTIRFENIPAYE 111
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
P EN +S+ IVR K F + P+ EA+ Q+E + H+FY F + ET
Sbjct: 112 P-----ENGNASESK---------IVRTKRFSIKPMNAEEAVLQMELLGHNFYVFLDGET 157
Query: 277 GEINIVYKRKAGGYGVIIP 295
E+ +VYKRK G YG+I P
Sbjct: 158 DEVGVVYKRKDGNYGLIEP 176
>gi|410667008|ref|YP_006919379.1| ribosomal subunit interface protein YfiA [Thermacetogenium phaeum
DSM 12270]
gi|409104755|gb|AFV10880.1| ribosomal subunit interface protein YfiA [Thermacetogenium phaeum
DSM 12270]
Length = 177
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 110/199 (55%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+ +TD +K+++E+K+ K + ++ ++E V +S G F EV
Sbjct: 1 MKIAIRGKNVAVTDGLKSYLEKKLTK-LTRYFDSIQEAQVAVSTVGEGFA-------VEV 52
Query: 159 TLFTKKHGVVRAEEDA-ETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ ++R EE + E + ++DLV +++++ K + K + F +++
Sbjct: 53 TIPLNGGMILRGEEVSRENFFEAVDLVVEKLEKQIHKQRTK------LYRKFRNQGLKDL 106
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + EN+ + EE IVR K F M P+ V EA+ Q+ + HDF+ F N ETG
Sbjct: 107 IASMGENE---KREE------PVIVRTKRFAMKPMAVDEAVLQMNLLGHDFFVFTNSETG 157
Query: 278 EINIVYKRKAGGYGVIIPK 296
++N++Y+RK G G+I P+
Sbjct: 158 QVNVIYRRKDGNLGLIEPE 176
>gi|118444043|ref|YP_878982.1| ribosomal subunit interface protein [Clostridium novyi NT]
gi|118134499|gb|ABK61543.1| ribosomal subunit interface protein [Clostridium novyi NT]
Length = 178
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 112/197 (56%), Gaps = 27/197 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ GKN+++T+ +++ VE K+ K + K+ EV LSV+ K +I EVT+
Sbjct: 5 VNGKNIQVTEGLRDAVERKLSK-LDKYFDPNVEVITTLSVQ-----KNSQI--VEVTI-- 54
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVREPVT 219
+GV+ RAE+ +YA+ID+V ++R++RK K K HG +K + +
Sbjct: 55 PFNGVILRAEDSNSDMYAAIDIVLEKLERQIRKQKTKLQRRKHGDALKF-------QFIP 107
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
+ V D ++DN +IV+ K F + P++ EA+ Q+E + H+F+ F N ET E+
Sbjct: 108 EYVPKD-------DEDNIESKIVKTKRFAIKPMSREEAVLQMELLGHNFFVFTNAETEEV 160
Query: 280 NIVYKRKAGGYGVIIPK 296
N++YKRK G YG+I P+
Sbjct: 161 NVLYKRKDGQYGLIEPE 177
>gi|341819881|emb|CCC56090.1| ribosome-associated inhibitor protein Y [Weissella thailandensis
fsh4-2]
Length = 240
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 127/244 (52%), Gaps = 25/244 (10%)
Query: 64 SSFFGPFKQITVMRP--------TKVHTKPLPV---RMSWDGPLSSVKLIIQGKNLELTD 112
++FF ++ +T+ P T K L + + S G ++ ++G+N+E+TD
Sbjct: 4 NAFFFCYQYVTIYLPIGYRNESLTACKIKILGILSYKFSQTGDRIMLEFKVRGENIEITD 63
Query: 113 TVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR 169
+ ++E+++ + + + + V+VR S + G F + EVT+ + ++R
Sbjct: 64 AMSEYIEKRISRLERYLNTEASYIARVNVR-SYKEGTF-------KTEVTI-QLPYLLLR 114
Query: 170 AEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQ 229
AE+ +Y ++D VS ++R++RK K K + R KG+ L + + AD +
Sbjct: 115 AEDTQTDMYQTVDFVSDKLERQIRKYKTKVNRKSRE-KGYKGLANTDFMAVDPTTVADAR 173
Query: 230 SEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGG 289
E +D+ + EIVR K ++ P+ EA+ Q+E + H+F+ F++ ET +VYKR+ G
Sbjct: 174 EAEPEDDGI-EIVRKKHVDLKPMDAEEAVLQMELLGHEFFIFQDAETDLPAVVYKRRDGK 232
Query: 290 YGVI 293
Y ++
Sbjct: 233 YALL 236
>gi|302671844|ref|YP_003831804.1| ribosomal subunit interface protein [Butyrivibrio proteoclasticus
B316]
gi|302396317|gb|ADL35222.1| ribosomal subunit interface protein [Butyrivibrio proteoclasticus
B316]
Length = 176
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 106/198 (53%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I GKN+E+T +++ VE+K+GK + K+ +V L+V + EV
Sbjct: 1 MKFTIVGKNIEVTPGLRSAVEDKIGK-LEKYFTPDTNANVTLNVDKER-------HKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRLKVREP 217
T+ K ++RAE+ + +Y SIDLV +I+R+L+K K K D + F +
Sbjct: 53 TIPVKGK-IIRAEQISNDMYVSIDLVEEVIERQLKKYKSKLVDKQQAEASNFKK------ 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ +E D +EED I RMK F+ P+ +A Q+E + H+F+ F N +T
Sbjct: 106 --EYIETDY---MDEEDIR----IERMKKFDPKPMYAEDACVQMELLGHNFFVFVNADTD 156
Query: 278 EINIVYKRKAGGYGVIIP 295
++N+VYKRK YG+I P
Sbjct: 157 QVNVVYKRKGNTYGLIEP 174
>gi|313680329|ref|YP_004058068.1| 30S ribosomal protein S30/sigma-54 modulation protein
[Oceanithermus profundus DSM 14977]
gi|313153044|gb|ADR36895.1| SSU ribosomal protein S30P;sigma 54 modulation protein
[Oceanithermus profundus DSM 14977]
Length = 183
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 23/194 (11%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR---CEVTLF 161
G+N+E+T+ +KN+VE K + ++V + V LS+ G P + R E+ L
Sbjct: 8 GRNVEVTEALKNYVERKAERLDRYFDNIV-DAKVVLSIAGA-----PHVERRAKAEIQL- 60
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
G++R EE +YA+ID +++++L++ K + G+ G P
Sbjct: 61 NVPGGIIRVEESDPDMYAAIDRAVEVLEKQLKRFKGRLM--GKRHSGLG------PSAPP 112
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ + E EIVR+K FEM P+T +A Q+E + H F+ FRN +TGEIN+
Sbjct: 113 PPPPEEEEEPFEP-----EIVRVKRFEMKPMTPEDAALQMEALGHTFFVFRNADTGEINV 167
Query: 282 VYKRKAGGYGVIIP 295
+Y+R G YG+I P
Sbjct: 168 IYRRHDGNYGLIEP 181
>gi|374320754|ref|YP_005073883.1| hypothetical protein HPL003_04455 [Paenibacillus terrae HPL-003]
gi|357199763|gb|AET57660.1| hypothetical protein HPL003_04455 [Paenibacillus terrae HPL-003]
Length = 184
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 16/196 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-IRRCE 157
+ L ++G+ +E+TD +K++V++K S L + D + G R + E
Sbjct: 1 MNLTVRGQQIEVTDALKDYVDKK-------FSRLEKYFDAPPTSDGSVTLSTTRDLHTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ V+RAE++++ +YASID V ++R++RK K K + R L V +P
Sbjct: 54 VTI-PLPGLVLRAEDESDDMYASIDAVVDKLERQIRKNKTKLNRKFRQKGSLKTLFVEDP 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V V + E D E+VR K F + P+ V EAI Q+ V H+F+ F N +
Sbjct: 113 AGSVA-----VAEDAELDEL--EVVRTKRFLLKPMDVEEAILQMNMVGHNFFVFANIDNE 165
Query: 278 EINIVYKRKAGGYGVI 293
E+++VYKR G YG+I
Sbjct: 166 EVSVVYKRNDGKYGLI 181
>gi|116333275|ref|YP_794802.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus brevis ATCC
367]
gi|116098622|gb|ABJ63771.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Lactobacillus brevis ATCC 367]
Length = 186
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 105/192 (54%), Gaps = 18/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV-DVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+TD ++++VE+++ K + V + + L V + K EVT+
Sbjct: 6 IRGENIEVTDAIRDYVEKRISKLEKYFDNNVEAIAHINLKVYQNKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ +RAEE + +YAS+DLV+ ++R++RK K K + R KG+ L T+
Sbjct: 59 PLPYLTLRAEETSPDLYASVDLVTDKLERQIRKYKTKVNRKSRE-KGYKNLDFS---TET 114
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
E+D + E E+VR K + P+ EA+ Q++ + HDF+ + + E+ I+I
Sbjct: 115 SESDKPAEGSEL------EVVRTKRVSLKPMDTEEAVLQMDMLGHDFFIYEDAESDGISI 168
Query: 282 VYKRKAGGYGVI 293
VY+R G YG+I
Sbjct: 169 VYRRNDGRYGLI 180
>gi|315037898|ref|YP_004031466.1| phosphate starvation inducible protein stress related protein
[Lactobacillus amylovorus GRL 1112]
gi|325956371|ref|YP_004291783.1| phosphate starvation inducible protein stress-like protein
[Lactobacillus acidophilus 30SC]
gi|385817252|ref|YP_005853642.1| phosphate starvation inducible protein stress-like protein
[Lactobacillus amylovorus GRL1118]
gi|312276031|gb|ADQ58671.1| putative phosphate starvation inducible protein stress related
protein [Lactobacillus amylovorus GRL 1112]
gi|325332936|gb|ADZ06844.1| phosphate starvation inducible protein stress related protein
[Lactobacillus acidophilus 30SC]
gi|327183190|gb|AEA31637.1| phosphate starvation inducible protein stress-like protein
[Lactobacillus amylovorus GRL1118]
Length = 180
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 109/195 (55%), Gaps = 20/195 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVLAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V EP
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVEEP- 113
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
Q E++ F +IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 114 ----------QEEKKPSEF--DIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETNG 161
Query: 279 INIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 162 TSVVYRRNDGRYGLI 176
>gi|423100840|ref|ZP_17088546.1| ribosomal subunit interface protein [Listeria innocua ATCC 33091]
gi|370792646|gb|EHN60502.1| ribosomal subunit interface protein [Listeria innocua ATCC 33091]
Length = 196
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 107/202 (52%), Gaps = 12/202 (5%)
Query: 92 WDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP 151
+ G ++ +K I+G+N+E+T+ ++++VE+K+ K + D + V +
Sbjct: 4 FKGGIAMLKYNIRGENIEVTEPIRDYVEKKIDKL---ERYFTETPDANVHVNLKVYSD-- 58
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
+ + EVT+ + V+RAEE + +YASIDL+ ++R++RK K K + R KG R
Sbjct: 59 KNAKVEVTI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-KGAER 116
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
+ + EE + +F EIVR K F + P+ EA+ Q+ + H FY +
Sbjct: 117 -----DYFAYSDVNGSTPPEENEGDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVY 171
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
+ ET NIVY RK G YG+I
Sbjct: 172 TDAETNGTNIVYSRKDGKYGLI 193
>gi|418007519|ref|ZP_12647401.1| ribosomal subunit interface protein [Lactobacillus casei UW4]
gi|410548758|gb|EKQ22946.1| ribosomal subunit interface protein [Lactobacillus casei UW4]
Length = 185
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 107/198 (54%), Gaps = 29/198 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++++VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRSYVEKRISKLNKFFGGSVTATAH------VNLKVYSDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 54 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
A+ + E++DN +VR K + P+ EAI Q++ + H+F+ F + +
Sbjct: 112 ATAP------AEPKPAEDNDNLT--VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDAD 163
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKR+ G YG+I
Sbjct: 164 TNGTSIVYKRRDGRYGLI 181
>gi|374337472|ref|YP_005094174.1| ribosomal subunit interface protein [Streptococcus macedonicus
ACA-DC 198]
gi|372283574|emb|CCF01762.1| Ribosomal subunit interface protein [Streptococcus macedonicus
ACA-DC 198]
Length = 182
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 113/195 (57%), Gaps = 17/195 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++N+VE K+GK + K+ + +D R++++ GK ++ EV
Sbjct: 2 IKYSIRGENIEVTDAIRNYVESKLGK-IEKYFRPEQVLDTRVNLKVYR-GKTAKV---EV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K + R + P
Sbjct: 57 TILVDSI-TLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIAKKHRE---------KLPD 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+Q+ ++ + + EE ++VR K + P+ + EA+ Q++ + HDF+ + + E G
Sbjct: 107 SQIFTSEFEAEPVEEGPAV--KVVRTKHVSLKPMDIDEALLQMDLLGHDFFIYTDAEDGV 164
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G+I
Sbjct: 165 TNVLYRREDGELGLI 179
>gi|386760149|ref|YP_006233366.1| ribosome-associated sigma 54 modulation protein [Bacillus sp. JS]
gi|384933432|gb|AFI30110.1| ribosome-associated sigma 54 modulation protein [Bacillus sp. JS]
Length = 189
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 28/202 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK H V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVEKKIGKLERYFDHSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PV 218
+R+E E +Y +IDL ++ ++R++RK K K NR K RE P
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPK 106
Query: 219 TQVV-----ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ + D VQ + E++ +D IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 107 YLLASGFGSDTDIAVQDDIEEEESLD-IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTN 165
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
ET N+VY+R G YG+I P
Sbjct: 166 AETNLTNVVYRRNDGKYGLIEP 187
>gi|221195721|ref|ZP_03568775.1| light-repressed protein [Atopobium rimae ATCC 49626]
gi|221184487|gb|EEE16880.1| light-repressed protein [Atopobium rimae ATCC 49626]
Length = 195
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 22/204 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP---RIRR 155
V + I G+ + ++D +++HVEEK+G A+ DV L V K P +
Sbjct: 2 VDIKISGRKVTVSDALRSHVEEKIGDALKVFDIQPMTCDVVLRV-----DKNPSNLERKS 56
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD---HGRHMKGFNRL 212
EVT+F + V + +Y +ID + + R+LRK K + D H ++ +G R
Sbjct: 57 VEVTVFVRNSVVRVVSS-GDDMYGAIDEAAEKVTRQLRKYKTRIVDKHHHAQNTRG--RA 113
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
+E + ++E A+ + D++VR K+ ++ P+T EA+ Q + + HDFY F
Sbjct: 114 LSQEELANLIETPAE--------DLDDQLVREKYIDLLPMTEEEALVQTDLLGHDFYVFV 165
Query: 273 NEETGEINIVYKRKAGGYGVIIPK 296
N TG N++Y RK GGYG+I P+
Sbjct: 166 NSTTGLTNVIYHRKNGGYGIIKPR 189
>gi|255527899|ref|ZP_05394743.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
carboxidivorans P7]
gi|255508399|gb|EET84795.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
carboxidivorans P7]
Length = 175
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 114/201 (56%), Gaps = 30/201 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ + GKN+E+T ++N VE K+ K + K+ + EV LSV+ K +I EV
Sbjct: 1 MRITVSGKNIEVTSALRNTVERKLSK-LEKYFNPDVEVYATLSVQ-----KNRQI--VEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
T+ +G++ R EE+ + +YASIDLV ++ ++RK K K H +K F +
Sbjct: 53 TI--PFNGIILRGEEENDDMYASIDLVVDKLEGQIRKQKTKLQRRTHSDSLK-FQFIPDL 109
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EP + +EE +IV+ K F + P++ EA+ Q+E + H+F+ +++ E
Sbjct: 110 EP-----------KDKEES-----KIVKTKRFAIKPMSSEEAVLQMELLGHNFFVYKDAE 153
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
GE+N+VYKRK G YG+I P+
Sbjct: 154 NGEVNVVYKRKDGNYGLIEPE 174
>gi|150015322|ref|YP_001307576.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Clostridium beijerinckii NCIMB 8052]
gi|149901787|gb|ABR32620.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
beijerinckii NCIMB 8052]
Length = 177
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 108/198 (54%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + KN+ELTD +K V++K+ K + K+ + E LSV+ R ++
Sbjct: 1 MKVTVIAKNMELTDALKEIVQKKISK-LEKYFEVNVEAKATLSVQKN---------RHKI 50
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ +GVV R EE +Y S+DLV ++R++RK K + S F +
Sbjct: 51 EVMIPFNGVVLRGEESTSDMYKSLDLVEDKLERQIRKQKTRLSRKHSGSLRFGEI----- 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
N+ D++ EEDD ++V++K F + P+ EAI Q++ + H+F+ +++ ++
Sbjct: 106 ------NNIDIKPSEEDDG---KLVKVKKFGVKPMNSEEAILQMDLLGHNFFVYQDADSS 156
Query: 278 EINIVYKRKAGGYGVIIP 295
++N++YKRK G YG++ P
Sbjct: 157 KVNVIYKRKDGDYGLLEP 174
>gi|373454576|ref|ZP_09546442.1| ribosomal subunit interface protein [Dialister succinatiphilus YIT
11850]
gi|371935851|gb|EHO63594.1| ribosomal subunit interface protein [Dialister succinatiphilus YIT
11850]
Length = 178
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 105/198 (53%), Gaps = 27/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L ++GKNLE+TD + ++VE+ GK + + + + + +R K CEV
Sbjct: 1 MELTVRGKNLEITDALHSYVEKHTGKI---QRYFDKPIKINVLLRISNMTKT-----CEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+F G++ R E ++ +Y SIDLV ++R++ K K + + R K R
Sbjct: 53 TVFVD--GIILRGVEKSDDMYKSIDLVFDKVERQIHKYKTRLA---------KRFKERNT 101
Query: 218 VTQ--VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
++ V+E +A + D F EIV+ K F + P++ EA+ Q+ + H F+ F N E
Sbjct: 102 LSHQFVMEKEA---ASAPDTEF--EIVKTKHFNISPMSPEEAVLQMNLLGHSFFMFFNSE 156
Query: 276 TGEINIVYKRKAGGYGVI 293
T + +VY+R G YG+I
Sbjct: 157 TEAMAVVYRRDDGKYGLI 174
>gi|220932482|ref|YP_002509390.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Halothermothrix orenii H 168]
gi|219993792|gb|ACL70395.1| sigma 54 modulation protein/ribosomal protein S30EA
[Halothermothrix orenii H 168]
Length = 184
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 23/201 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ GKN+++T +K + EKV K +E + + V KG I EV
Sbjct: 1 MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDGEPQEAHISMEVE-----KGRHI--VEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T + ++R EE+++ +YASID V ++R++ K K K NR K+RE
Sbjct: 54 TAYLNGL-ILRGEEESQDMYASIDGVLEKLERQVHKYKTK----------INR-KIRERK 101
Query: 219 TQVVENDADVQSEE----EDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ + + + EE E+D F IVR K F + P++V EA Q++ + HDF+ F N
Sbjct: 102 QEFKKEYKEERREEILNSEEDEFKPRIVRTKKFAIKPMSVEEAAMQMDLLGHDFFVFTNA 161
Query: 275 ETGEINIVYKRKAGGYGVIIP 295
T ++N+VYKRK G YG+I P
Sbjct: 162 NTEQVNVVYKRKDGNYGLIEP 182
>gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|385815327|ref|YP_005851718.1| Putative phosphate starvation inducible protein stressrelated
[Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|418029070|ref|ZP_12667618.1| hypothetical protein LDBUL1632_00412 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|418035444|ref|ZP_12673901.1| hypothetical protein LDBUL1519_00601 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|116093026|gb|ABJ58179.1| SSU ribosomal protein S30P [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325125364|gb|ADY84694.1| Putative phosphate starvation inducible protein stressrelated
[Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|354690433|gb|EHE90381.1| hypothetical protein LDBUL1519_00601 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354690788|gb|EHE90730.1| hypothetical protein LDBUL1632_00412 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 185
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 112/197 (56%), Gaps = 19/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L ++V V L V K
Sbjct: 2 LKYNVRGENIEVTEALRDYVEKRLTK-LEKYFDLSQDVIAHVNLKVYRDHSAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG + E
Sbjct: 55 EVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGVEEFFIPE 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
DA V+ E+E+ + +IVR K + P+ EAI Q++ ++HDF+ F++ ET
Sbjct: 113 --------DAPVEEEKEEKAPMFKIVRNKRVNLKPMDPEEAILQMDMLEHDFFVFQDAET 164
Query: 277 GEINIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 165 NGTSVVYRRNDGSYGLI 181
>gi|260892368|ref|YP_003238465.1| sigma 54 modulation protein/ribosomal protein S30EA [Ammonifex
degensii KC4]
gi|260864509|gb|ACX51615.1| sigma 54 modulation protein/ribosomal protein S30EA [Ammonifex
degensii KC4]
Length = 177
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 110/198 (55%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ ++GKN+E+T+ ++ +VE+++GK + + ++ + E V LS+ + EV
Sbjct: 1 MRITVRGKNIEVTEALRQYVEKRLGK-LERFANYLGEAQVVLSLEREN-------HKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE +YA+IDLV ++R++ + K K R ++G P
Sbjct: 53 TI-NMNGMILRGEEATHDMYAAIDLVVDKLERQIERYKGKWLR--RRVEG-----SAAPS 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T +E + EE +V++K F P+++ EAI Q+ + H+F+ F N ET +
Sbjct: 105 TPYLEPAGKGEEEE------FRVVKVKRFAWKPMSIKEAILQMNLLGHNFFVFTNAETEQ 158
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VY+RK G YG+I P+
Sbjct: 159 VNVVYRRKDGNYGLIEPE 176
>gi|169826756|ref|YP_001696914.1| hypothetical protein Bsph_1176 [Lysinibacillus sphaericus C3-41]
gi|168991244|gb|ACA38784.1| Hypothetical yvyD protein [Lysinibacillus sphaericus C3-41]
Length = 183
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 16/191 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE K+ K + +V+ +V + + + EVT+
Sbjct: 6 IRGENIEVTPAIREYVENKIEKV---ERYFNEDVNANANVNLKVYN--DKQTKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE +YA++DL+ ++R++RK K K + R +G + TQ V
Sbjct: 60 MKNLTLRAEERHNDMYAAVDLIVDKLERQIRKHKTKVNRKFREREG---AGLYFATTQAV 116
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
AD +EE+ + IVR K F++ P+ EA+ Q+ + HDFY F + E+ NIV
Sbjct: 117 ---ADTTLDEEEYS----IVRTKQFDLKPMDQEEAVLQMNMLGHDFYVFTDAESNGTNIV 169
Query: 283 YKRKAGGYGVI 293
YKRK G YG+I
Sbjct: 170 YKRKDGKYGLI 180
>gi|376284197|ref|YP_005157407.1| hypothetical protein CD31A_0701 [Corynebacterium diphtheriae 31A]
gi|371577712|gb|AEX41380.1| hypothetical protein CD31A_0701 [Corynebacterium diphtheriae 31A]
Length = 220
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 106/209 (50%), Gaps = 23/209 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
VK+ I G+N+E V H E+V + K S L D L+ E P RR E
Sbjct: 15 VKVTITGRNVE----VPEHFAERVNTKLAKISRL----DPTLNFFHVELQHEPNPRRSEQ 66
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES----DH----GR 204
+T K H + RAE ++ YA+++ + ++R LRK+K + S H G
Sbjct: 67 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPLGT 125
Query: 205 HMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENV 264
+K E + ++D D +++ +D +IVR K P++V +A+ ++E V
Sbjct: 126 GEAAAELVKEAEVAREENKHDHDPYADKVEDVIPGQIVRTKEHPSTPMSVDDALSEMELV 185
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVI 293
HDFY F NEETG+ ++VY+R+A YG+I
Sbjct: 186 GHDFYLFVNEETGQPSVVYRRRAFDYGLI 214
>gi|229829657|ref|ZP_04455726.1| hypothetical protein GCWU000342_01754 [Shuttleworthia satelles DSM
14600]
gi|229791646|gb|EEP27760.1| hypothetical protein GCWU000342_01754 [Shuttleworthia satelles DSM
14600]
Length = 176
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 105/202 (51%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE---VDVRLSV-RGGEFGKGPRIR 154
+K I G+N+ELTD +K+ VE+ A+ K RE V +SV + G+
Sbjct: 1 MKTTITGRNIELTDGLKSAVED----ALSKLDRYFREDTLAHVTMSVDKAGQ-------- 48
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
R E+T+ K G+VR E+ + +Y SID S I+ +L K + K D R KG
Sbjct: 49 RVELTIPVKG-GIVRCEKTTDDMYVSIDAASEGIEDQLTKYRHKLVD--RAHKG------ 99
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
V N A + +ED+ +IVR K F++ P+ +A Q+E + H F+ F N
Sbjct: 100 ------AVLNAAFEEGFDEDEEEEIKIVRTKKFDLKPMYAEDACAQMELLGHSFFVFTNA 153
Query: 275 ETGEINIVYKRKAGGYGVIIPK 296
ET +N+VY+RK G YG+I P+
Sbjct: 154 ETDAVNVVYRRKNGSYGLIEPE 175
>gi|227903554|ref|ZP_04021359.1| ribosome-associated inhibitor protein Y [Lactobacillus acidophilus
ATCC 4796]
gi|227868441|gb|EEJ75862.1| ribosome-associated inhibitor protein Y [Lactobacillus acidophilus
ATCC 4796]
Length = 195
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 113/205 (55%), Gaps = 20/205 (9%)
Query: 89 RMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFG 148
R++ G +K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R
Sbjct: 7 RLAVKGESYMLKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDH 65
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
+ EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG
Sbjct: 66 SA----KVEVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KG 119
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
V +P + E++ F +IVR K + P+ EAI Q++ ++HDF
Sbjct: 120 LQDFFVEQP-----------EEEKKPSEF--DIVRNKRVSLKPMDPEEAILQMDMLEHDF 166
Query: 269 YGFRNEETGEINIVYKRKAGGYGVI 293
+ F + ET ++VY+R G YG+I
Sbjct: 167 FVFEDAETNGTSVVYRRNDGRYGLI 191
>gi|326203367|ref|ZP_08193232.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
papyrosolvens DSM 2782]
gi|325986625|gb|EGD47456.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
papyrosolvens DSM 2782]
Length = 176
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 113/200 (56%), Gaps = 27/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CE 157
+ +II GKN+E+T+ ++ V ++V K + K + EV V LSV+ R+ + E
Sbjct: 1 MNIIISGKNIEITEALREKVTKRV-KKLEKFFNSDTEVHVTLSVQ--------RVSQIVE 51
Query: 158 VTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
+T+ +GV +RAE+ E +Y SID +I+R++RK K R + F+ R
Sbjct: 52 ITI--PFNGVTLRAEDQNEDMYTSIDRAVDLIERQIRKNK------TRLERRFHDNDFRV 103
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
T+ ++ DVQ E E ++VR K F + P+ V EAI Q+ + H+F+ F N ++
Sbjct: 104 DNTKFID---DVQEETEF-----KVVRSKRFAVKPMDVEEAILQMNLLGHEFFMFYNADS 155
Query: 277 GEINIVYKRKAGGYGVIIPK 296
++N+VYKRK G YG+I P+
Sbjct: 156 RQVNVVYKRKDGNYGLIEPE 175
>gi|323340159|ref|ZP_08080423.1| ribosomal subunit interface protein [Lactobacillus ruminis ATCC
25644]
gi|417972738|ref|ZP_12613626.1| ribosome-associated factor Y [Lactobacillus ruminis ATCC 25644]
gi|323092350|gb|EFZ34958.1| ribosomal subunit interface protein [Lactobacillus ruminis ATCC
25644]
gi|346330803|gb|EGX99034.1| ribosome-associated factor Y [Lactobacillus ruminis ATCC 25644]
Length = 186
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 20/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--VDVRLSVRGGEFGKGPRIRRC 156
+K+ ++G+N+E+T +++ +VE+K+ K + K+ V L V + K
Sbjct: 2 LKINVRGENIEVTGSIREYVEKKLAK-LEKYFEDTSSSTAHVNLKVYSDKNCK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KGF
Sbjct: 55 EVTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKHKTKLNRKSRE-KGFKTF---- 108
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ V ++ ED F EIVR K + P+ EAI Q++ + HDF+ + + ET
Sbjct: 109 ---EFVPTADPKEAAAEDKKF--EIVRTKSVSLKPMDAEEAILQMDMLGHDFFIYEDAET 163
Query: 277 GEINIVYKRKAGGYGVI 293
I+IVY+R+ G YG+I
Sbjct: 164 SGIDIVYRRRDGRYGLI 180
>gi|393201993|ref|YP_006463835.1| ribosome-associated protein Y [Solibacillus silvestris StLB046]
gi|406667207|ref|ZP_11074967.1| hypothetical protein B857_02792 [Bacillus isronensis B3W22]
gi|327441324|dbj|BAK17689.1| ribosome-associated protein Y [Solibacillus silvestris StLB046]
gi|405384899|gb|EKB44338.1| hypothetical protein B857_02792 [Bacillus isronensis B3W22]
Length = 185
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 16/196 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T ++++VE K+ K + L +V L V + K E
Sbjct: 2 LKFNIRGENIEVTPAIRDYVENKIEKVERYFNEDLNANANVNLKVYNDKQTK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K+ +RAEE +YA++DL+ ++R++RK K K + R +G
Sbjct: 56 VTI-PMKNLTLRAEERHNDMYAAVDLIVDKLERQIRKHKTKVNRKFRDREGTGVYFAN-- 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
VT +E +A E +D + IVR K F++ P+ EA+ Q+ + HDFY F + ET
Sbjct: 113 VTSQMEANA----ESSEDEYT--IVRTKQFDLKPMDQEEAVLQMNMLGHDFYIFTDAETD 166
Query: 278 EINIVYKRKAGGYGVI 293
NIVYKRK G YG+I
Sbjct: 167 GTNIVYKRKDGKYGLI 182
>gi|258517066|ref|YP_003193288.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Desulfotomaculum acetoxidans DSM 771]
gi|257780771|gb|ACV64665.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum acetoxidans DSM 771]
Length = 177
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 24/196 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+++T +K++VE+++ K ++ E V + V R EVT+
Sbjct: 5 VRGRNIQVTPALKDYVEKRLSKMDKFADNYHFGEAQVTMKVE-------KESHRVEVTIP 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
++R EE +Y+SIDLV +++++ + K K S GR + G V V
Sbjct: 58 VNGM-ILRGEETTGDMYSSIDLVVEKLEKQINRFKGKLSRRGRALNG---------VPYV 107
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
E A V D+ +I+R K F M P++V EA+ Q+ + H F+ F N ++ N+
Sbjct: 108 SETQAAV------DDDAPKILRNKRFNMKPMSVEEAVLQMNLLGHSFFVFSNADSDRANV 161
Query: 282 VYKRKAGGYGVIIPKG 297
VYKRK G YG+I P+
Sbjct: 162 VYKRKDGNYGLIEPEA 177
>gi|253575892|ref|ZP_04853226.1| ribosomal subunit interface protein [Paenibacillus sp. oral taxon
786 str. D14]
gi|251844686|gb|EES72700.1| ribosomal subunit interface protein [Paenibacillus sp. oral taxon
786 str. D14]
Length = 183
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 107/200 (53%), Gaps = 33/200 (16%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--------VRLSVRGGEFGKGPRIR 154
I+G+ +E+T+ ++++V++K+ S L + D V LSV G +
Sbjct: 5 IRGQQIEVTEALRDYVDKKL-------SRLDKYFDAPPTSDGTVTLSVVRG-------LH 50
Query: 155 RCEVTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
EVT+ GVV RAE+ ++ +YASID V ++R++RK K K + R N L
Sbjct: 51 AVEVTI--PLTGVVLRAEDRSDDMYASIDAVVDKLERQIRKHKTKINRKLRQKGVKNSLF 108
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
V + T V D + EEE E+VR K F + P+ V EAI Q+ V H+F+ F N
Sbjct: 109 VEDATTGSVALD---EGEEEL-----EVVRTKRFTLKPMDVEEAILQMNMVGHNFFVFSN 160
Query: 274 EETGEINIVYKRKAGGYGVI 293
+T E+N+VYKR G YG+I
Sbjct: 161 IDTKEVNVVYKRNDGKYGLI 180
>gi|335998128|ref|ZP_08564040.1| ribosome-associated inhibitor protein Y [Lactobacillus ruminis
SPM0211]
gi|335348642|gb|EGM50143.1| ribosome-associated inhibitor protein Y [Lactobacillus ruminis
SPM0211]
Length = 186
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 20/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--VDVRLSVRGGEFGKGPRIRRC 156
+K+ ++G+N+E+T +++ +VE+K+ K + K+ V L V + K
Sbjct: 2 LKINVRGENIEVTGSIREYVEKKLAK-LEKYFEDTSSSTAHVNLKVYSDKNCK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KGF
Sbjct: 55 EVTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKHKTKLNRKSRE-KGFKTF---- 108
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ V ++ ED F EIVR K + P+ EAI Q++ + HDF+ + + ET
Sbjct: 109 ---EFVPTANPEEAAAEDKKF--EIVRTKSVSLKPMDAEEAILQMDMLGHDFFIYEDAET 163
Query: 277 GEINIVYKRKAGGYGVI 293
I+IVY+R+ G YG+I
Sbjct: 164 SGIDIVYRRRDGRYGLI 180
>gi|257063427|ref|YP_003143099.1| ribosomal subunit interface protein [Slackia heliotrinireducens DSM
20476]
gi|256791080|gb|ACV21750.1| ribosomal subunit interface protein [Slackia heliotrinireducens DSM
20476]
Length = 182
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 25/199 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+ G+ L +T T+ ++ EK+G A VL L EV +R+ + P I CEVT+
Sbjct: 5 VVGRKLTVTPTMNDYAVEKIGNALKVLDIDTLDAEVVLRVE----KAHVIPCI--CEVTI 58
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVREPV 218
K H +V EE +YA+ID+ ++ + R+LRK K + E G E +
Sbjct: 59 RPKGH-IVHVEERDSDMYAAIDIAAAKLTRQLRKYKTRVIEKRDG------------ETI 105
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ D D E + DE+VR+K E P+T +A Q++ + HDF+ + + +T E
Sbjct: 106 RTAADPDFDALMAELSAD--DEVVRVKEVEFTPMTEEQACVQIDLLGHDFFVYTDRDTNE 163
Query: 279 INIVYKRKAGGYGVIIPKG 297
+N++Y+R+ GGYG++ P+
Sbjct: 164 VNVLYRRENGGYGLLKPRA 182
>gi|157693931|ref|YP_001488393.1| ribosome-associated inhibitor A [Bacillus pumilus SAFR-032]
gi|194015625|ref|ZP_03054241.1| ribosome-associated inhibitor A [Bacillus pumilus ATCC 7061]
gi|157682689|gb|ABV63833.1| ribosome-associated inhibitor A [Bacillus pumilus SAFR-032]
gi|194013029|gb|EDW22595.1| ribosome-associated inhibitor A [Bacillus pumilus ATCC 7061]
Length = 187
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 16/197 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--EVDVRLSVRGGEFGKGPRIRRCEVTL 160
++G+N+++T +++HVE+K+GK L R E DV SV + + EVT+
Sbjct: 5 VRGENIDVTPALRDHVEKKIGK-------LERYFETDVDASVNVNLKFYNDQESKVEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
+RAE E +Y ++DL +S ++R++RK K K + R L T
Sbjct: 58 -PMTDLALRAEVHNEDMYNAVDLAASKLERQIRKHKTKVNRKFREQGAKKHLFAGGNGTA 116
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
D VQ +EE D EIVR K F + P+ EAI Q+ + H F+ F N ET N
Sbjct: 117 ----DVAVQDDEEIDE--TEIVRQKRFNLKPMDSEEAILQMNMLGHSFFVFTNAETNLTN 170
Query: 281 IVYKRKAGGYGVIIPKG 297
+VY+R G YG+I P
Sbjct: 171 VVYRRNDGKYGLIEPNA 187
>gi|402777694|ref|YP_006631638.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
QB928]
gi|430756688|ref|YP_007207967.1| hypothetical protein A7A1_1196 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|402482873|gb|AFQ59382.1| Ribosome-associated sigma 54 modulation protein [Bacillus subtilis
QB928]
gi|430021208|gb|AGA21814.1| Hypothetical protein YvyD [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 190
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 26/201 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T +K+HVE K+GK H V + DV ++++ + + EVT+
Sbjct: 6 IRGENIEVTPALKDHVERKIGKLERYFDHSV-DADVNVNLKF----YNDKESKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP----- 217
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 60 MTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPKY 108
Query: 218 -VTQVVENDAD--VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ + +D D VQ + E++ +D IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 109 LLANGLGSDTDIAVQDDIEEEESLD-IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTNA 167
Query: 275 ETGEINIVYKRKAGGYGVIIP 295
ET N+VY+R G YG+I P
Sbjct: 168 ETNLTNVVYRRNDGKYGLIEP 188
>gi|227552030|ref|ZP_03982079.1| ribosome-associated inhibitor protein Y [Enterococcus faecium
TX1330]
gi|257886809|ref|ZP_05666462.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,141,733]
gi|257895378|ref|ZP_05675031.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium Com12]
gi|257897989|ref|ZP_05677642.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium Com15]
gi|293378247|ref|ZP_06624416.1| ribosomal subunit interface protein [Enterococcus faecium PC4.1]
gi|293572410|ref|ZP_06683390.1| ribosomal subunit interface protein [Enterococcus faecium E980]
gi|424762476|ref|ZP_18189985.1| ribosomal subunit interface protein [Enterococcus faecalis
TX1337RF]
gi|425055592|ref|ZP_18459065.1| ribosomal subunit interface protein [Enterococcus faecium 505]
gi|430841788|ref|ZP_19459706.1| ribosomal subunit interface protein [Enterococcus faecium E1007]
gi|431033351|ref|ZP_19491197.1| ribosomal subunit interface protein [Enterococcus faecium E1590]
gi|431077651|ref|ZP_19495116.1| ribosomal subunit interface protein [Enterococcus faecium E1604]
gi|431112218|ref|ZP_19497594.1| ribosomal subunit interface protein [Enterococcus faecium E1613]
gi|431586370|ref|ZP_19520885.1| ribosomal subunit interface protein [Enterococcus faecium E1861]
gi|431737078|ref|ZP_19526034.1| ribosomal subunit interface protein [Enterococcus faecium E1972]
gi|431741079|ref|ZP_19529987.1| ribosomal subunit interface protein [Enterococcus faecium E2039]
gi|431752331|ref|ZP_19541014.1| ribosomal subunit interface protein [Enterococcus faecium E2620]
gi|431757175|ref|ZP_19545806.1| ribosomal subunit interface protein [Enterococcus faecium E3083]
gi|227178783|gb|EEI59755.1| ribosome-associated inhibitor protein Y [Enterococcus faecium
TX1330]
gi|257822863|gb|EEV49795.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,141,733]
gi|257831943|gb|EEV58364.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium Com12]
gi|257835901|gb|EEV60975.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium Com15]
gi|291607472|gb|EFF36814.1| ribosomal subunit interface protein [Enterococcus faecium E980]
gi|292643111|gb|EFF61252.1| ribosomal subunit interface protein [Enterococcus faecium PC4.1]
gi|402424701|gb|EJV56869.1| ribosomal subunit interface protein [Enterococcus faecium TX1337RF]
gi|403033665|gb|EJY45156.1| ribosomal subunit interface protein [Enterococcus faecium 505]
gi|430493846|gb|ELA70130.1| ribosomal subunit interface protein [Enterococcus faecium E1007]
gi|430564452|gb|ELB03636.1| ribosomal subunit interface protein [Enterococcus faecium E1590]
gi|430566066|gb|ELB05187.1| ribosomal subunit interface protein [Enterococcus faecium E1604]
gi|430569172|gb|ELB08189.1| ribosomal subunit interface protein [Enterococcus faecium E1613]
gi|430593548|gb|ELB31534.1| ribosomal subunit interface protein [Enterococcus faecium E1861]
gi|430599454|gb|ELB37160.1| ribosomal subunit interface protein [Enterococcus faecium E1972]
gi|430602403|gb|ELB39976.1| ribosomal subunit interface protein [Enterococcus faecium E2039]
gi|430613822|gb|ELB50821.1| ribosomal subunit interface protein [Enterococcus faecium E2620]
gi|430619464|gb|ELB56291.1| ribosomal subunit interface protein [Enterococcus faecium E3083]
Length = 183
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 18/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ EEE++N + +IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 DAAVLFNGEEENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 282 VYKRKAGGYGVI 293
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|403387504|ref|ZP_10929561.1| SSU ribosomal protein S30P [Clostridium sp. JC122]
Length = 174
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 31/192 (16%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRCEVTLFT 162
GKN+ELT +++ V++K+ K + EV+ LSV RC++ +
Sbjct: 7 GKNIELTSALRDVVDKKLSKL---DKYFSEEVNANATLSVEKN---------RCKIEVTI 54
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+GV +RAEE E +YA+IDLV ++ ++RK K K K ++ V
Sbjct: 55 PFNGVRLRAEEKHEDMYAAIDLVLDKLESQIRKQKTKLQ------------KRKQNVDLN 102
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
N D + E+E+ +IV+ K F + P++ EAI Q+E + HDF+ F N T N+
Sbjct: 103 FNNIDDYKYEDEEP----KIVKTKKFAIKPMSTEEAILQMELLGHDFFVFTNSHTSMANV 158
Query: 282 VYKRKAGGYGVI 293
+YKRK G YG+I
Sbjct: 159 LYKRKDGNYGLI 170
>gi|16080584|ref|NP_391411.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
subsp. subtilis str. 168]
gi|221311481|ref|ZP_03593328.1| hypothetical protein Bsubs1_19101 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315808|ref|ZP_03597613.1| hypothetical protein BsubsN3_19017 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320723|ref|ZP_03602017.1| hypothetical protein BsubsJ_18980 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325008|ref|ZP_03606302.1| hypothetical protein BsubsS_19136 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321313077|ref|YP_004205364.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
BSn5]
gi|384177163|ref|YP_005558548.1| YvyD [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|418031251|ref|ZP_12669736.1| hypothetical protein BSSC8_06800 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|428281126|ref|YP_005562861.1| hypothetical protein BSNT_05372 [Bacillus subtilis subsp. natto
BEST195]
gi|449095979|ref|YP_007428470.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
XF-1]
gi|452913692|ref|ZP_21962320.1| ribosomal subunit interface protein [Bacillus subtilis MB73/2]
gi|732321|sp|P28368.2|YVYD_BACSU RecName: Full=Putative sigma-54 modulation protein; AltName:
Full=Hst23; AltName: Full=SigL modulation protein
gi|499384|emb|CAA83251.1| orf189 [Bacillus subtilis]
gi|1762348|gb|AAC44956.1| sigma-54 modulator homolog [Bacillus subtilis subsp. subtilis str.
168]
gi|2636057|emb|CAB15548.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
subsp. subtilis str. 168]
gi|291486083|dbj|BAI87158.1| hypothetical protein BSNT_05372 [Bacillus subtilis subsp. natto
BEST195]
gi|320019351|gb|ADV94337.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
BSn5]
gi|349596387|gb|AEP92574.1| YvyD [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|351472310|gb|EHA32423.1| hypothetical protein BSSC8_06800 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407962367|dbj|BAM55607.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
BEST7613]
gi|407966381|dbj|BAM59620.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
BEST7003]
gi|449029894|gb|AGE65133.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
XF-1]
gi|452118720|gb|EME09114.1| ribosomal subunit interface protein [Bacillus subtilis MB73/2]
Length = 189
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 26/201 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T +K+HVE K+GK H V + DV ++++ + + EVT+
Sbjct: 5 IRGENIEVTPALKDHVERKIGKLERYFDHSV-DADVNVNLKF----YNDKESKVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP----- 217
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 59 MTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPKY 107
Query: 218 -VTQVVENDAD--VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ + +D D VQ + E++ +D IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 108 LLANGLGSDTDIAVQDDIEEEESLD-IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTNA 166
Query: 275 ETGEINIVYKRKAGGYGVIIP 295
ET N+VY+R G YG+I P
Sbjct: 167 ETNLTNVVYRRNDGKYGLIEP 187
>gi|296134262|ref|YP_003641509.1| ribosomal subunit interface protein [Thermincola potens JR]
gi|296032840|gb|ADG83608.1| ribosomal subunit interface protein [Thermincola potens JR]
Length = 173
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 26/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL ++GKN+++T +K +VE+++ K + K E V L V + EV
Sbjct: 1 MKLNVRGKNIDVTPALKEYVEKRLSK-LEKFFDNELEAQVTLVVEKD-------THKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE +YASIDLV ++R++ K K K R K PV
Sbjct: 53 TMPVNGM-ILRGEEATGDMYASIDLVIEKLERQINKYKTKIMSK--------RTKTGNPV 103
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+A +ED+ IV+ K F + P+ V EA+ Q+ + H+F+ F N ET E
Sbjct: 104 ------EAPAAGADEDE---PRIVKTKRFAIKPMPVDEAVLQMNMLGHNFFVFSNAETEE 154
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK G YG+I P+
Sbjct: 155 VNVVYKRKDGNYGLIEPE 172
>gi|217967793|ref|YP_002353299.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Dictyoglomus turgidum DSM 6724]
gi|217336892|gb|ACK42685.1| sigma 54 modulation protein/ribosomal protein S30EA [Dictyoglomus
turgidum DSM 6724]
Length = 179
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 107/190 (56%), Gaps = 23/190 (12%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
KN+ +T+ ++ + E+K+ K + + + ++V S ++ G + R EVTL K +
Sbjct: 8 KNVNITENLQEYAEKKLSK-LSRFFDNIENIEVVFS--EEDWRDGSKRHRVEVTL--KAN 62
Query: 166 G-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
G +++A E + +S+DLV ++ +L+K+KEK D GR + + + E
Sbjct: 63 GKIIKASEANQDFRSSVDLVVDKLEAQLKKLKEKLVDKGRRTESIRGILIEE-------- 114
Query: 225 DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYK 284
++EE E+V++K F + P+ + EAI Q+E + HDF+ FR+ ET +I +VYK
Sbjct: 115 -----TKEEKP----EVVKVKRFLLKPMDLEEAILQMELLGHDFFIFRDAETDKIEVVYK 165
Query: 285 RKAGGYGVII 294
RK G YG+I+
Sbjct: 166 RKDGKYGLIV 175
>gi|291460987|ref|ZP_06026274.2| putative sigma(54) modulation protein [Fusobacterium periodonticum
ATCC 33693]
gi|291379621|gb|EFE87139.1| putative sigma(54) modulation protein [Fusobacterium periodonticum
ATCC 33693]
Length = 195
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 30/203 (14%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
S+KL I G+ + LTD +K + EEK+ + V K + + ++D L+ + G E
Sbjct: 14 SMKLSIHGRKITLTDAIKKYAEEKISR-VEKFNDSILKIDATLAASKLKTGNA---HVTE 69
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ + ++A +YASID I++ +L+K KEK S R KV++
Sbjct: 70 ILAYLS-GSTLKATATETDLYASIDKAVDIMENQLKKHKEKRS----------RAKVQDD 118
Query: 218 VTQ-------VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
+ +VE + V E++ +VR+ + + P+ +SEAI QLE ++ F+
Sbjct: 119 TRKKSYSFDYIVEPEEKVSDEKK-------LVRV-YLPLKPMEISEAILQLEYLNRVFFA 170
Query: 271 FRNEETGEINIVYKRKAGGYGVI 293
F N ETG++ +VYKRK G YGVI
Sbjct: 171 FTNSETGKMAVVYKRKDGDYGVI 193
>gi|365851225|ref|ZP_09391665.1| ribosomal subunit interface protein [Lactobacillus parafarraginis
F0439]
gi|363717257|gb|EHM00637.1| ribosomal subunit interface protein [Lactobacillus parafarraginis
F0439]
Length = 219
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 23/207 (11%)
Query: 94 GPL----SSVKLI--IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGE 146
GPL +V LI I+G+N+E+T ++++VE+++ K + V L V +
Sbjct: 24 GPLMVKGENVMLIFNIRGENIEVTQAIRDYVEKRISKLEKYFEKDMKNTAHVNLRVYPDK 83
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
K EVT+ + +RAEE + +YAS+DLV+ ++R++RK K K + R
Sbjct: 84 QAK------VEVTI-PLPYLTLRAEEVSNDLYASVDLVTDKLERQIRKYKTKVNRKSRE- 135
Query: 207 KGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDH 266
KGF L+ TQ +++ DD ++VR K + P+ EAI Q++ + H
Sbjct: 136 KGFKNLEFIPNETQ--------PADDSDDESKFDVVRTKRLALKPMDNEEAILQMDMLGH 187
Query: 267 DFYGFRNEETGEINIVYKRKAGGYGVI 293
DF+ + + +T I+IVY+R G YG+I
Sbjct: 188 DFFIYEDADTSGIDIVYRRNDGRYGLI 214
>gi|72162891|ref|YP_290548.1| 30S ribosomal protein S30 [Thermobifida fusca YX]
gi|71916623|gb|AAZ56525.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Thermobifida fusca YX]
Length = 226
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 37/227 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+ +I++G+ ++D + HVE K+ K + VDV +S + PR+ R
Sbjct: 1 MDIIVKGRRTGVSDKFRRHVEHKLAKLRKWERKDMMSVDVEVSKE-----RNPRLANHRE 55
Query: 157 EVTLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH--GRHMKGFNRLK 213
V L + G VVR E A+ Y ++DL ++ +LRK+ ++ H R +
Sbjct: 56 RVELTIRSSGPVVRGEAAADDRYTALDLALDRVEARLRKLADRRKVHKGSRGLVSVAAAT 115
Query: 214 VREPVT----------QVVENDADVQSEEEDDN-----FVDE------------IVRMKF 246
+ PV QVVE+ + Q+EE D + F DE +VR KF
Sbjct: 116 AQLPVDGLPADSAIPPQVVEDREENQAEEFDGSAVDSAFADEFVELDTEGGGSLVVREKF 175
Query: 247 FEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
P+T+ +A+ ++E V HDFY FR++E G ++VY+RK YGV+
Sbjct: 176 HYAKPMTIDQALLEMELVGHDFYLFRDKEQGLPSVVYRRKGFNYGVL 222
>gi|294791753|ref|ZP_06756901.1| ribosomal subunit interface protein [Veillonella sp. 6_1_27]
gi|294456983|gb|EFG25345.1| ribosomal subunit interface protein [Veillonella sp. 6_1_27]
Length = 175
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+E+TD ++ ++E+++ K L R D L+ + E+
Sbjct: 1 MKVAIRGKNIEVTDALRAYIEKRLSK-------LTRYFDDELNAQAV-LSVVKDKSTIEL 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F K V+R E + +YA+IDLV I R++ K K + + + + F+ + PV
Sbjct: 53 TCFVDK-IVLRGVETNDDMYAAIDLVVDKIVRQIHKYKTRLAKRFKKQEAFHPEALATPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
EEE E+V+ K F + P+ V EAI Q+ + HDF+ F N ET
Sbjct: 112 ------------EEE----TIEVVKRKHFVVRPMDVEEAILQMNLIGHDFFMFFNAETES 155
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VY+R G YG+I P+
Sbjct: 156 MNVVYRRHDGFYGLIEPE 173
>gi|239828323|ref|YP_002950947.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Geobacillus sp. WCH70]
gi|239808616|gb|ACS25681.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. WCH70]
Length = 182
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 104/193 (53%), Gaps = 20/193 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+N+E+T ++ +VE+K+GK +++ + V V L V + GK EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKIGKLERYFENTEDI-HVHVNLKVYNDKQGK------IEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
++RAEE + +YA+IDLV+ ++R++RK H NR + Q
Sbjct: 58 -PMPQLLLRAEERHDDMYAAIDLVADKLERQIRK----------HKTKVNRKLRNKETKQ 106
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
V+ + EE++ EIVR K F + P+ EAI Q+ + H+F+ F N ET N
Sbjct: 107 VLVTQNNNPPVEENEEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTN 166
Query: 281 IVYKRKAGGYGVI 293
IVY+RK G YG+I
Sbjct: 167 IVYRRKDGKYGLI 179
>gi|282848849|ref|ZP_06258239.1| ribosomal subunit interface protein [Veillonella parvula ATCC
17745]
gi|294793614|ref|ZP_06758751.1| ribosomal subunit interface protein [Veillonella sp. 3_1_44]
gi|416998830|ref|ZP_11939499.1| ribosomal subunit interface protein [Veillonella parvula
ACS-068-V-Sch12]
gi|282581354|gb|EFB86747.1| ribosomal subunit interface protein [Veillonella parvula ATCC
17745]
gi|294455184|gb|EFG23556.1| ribosomal subunit interface protein [Veillonella sp. 3_1_44]
gi|333976983|gb|EGL77842.1| ribosomal subunit interface protein [Veillonella parvula
ACS-068-V-Sch12]
Length = 175
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+E+TD ++ ++E+++ K L R D L+ + E+
Sbjct: 1 MKVAIRGKNIEVTDALRAYIEKRLSK-------LTRYFDDELNAQAV-LSVVKDKSTIEL 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F K V+R E + +YA+IDLV I R++ K K + + + + F+ + PV
Sbjct: 53 TCFVDK-IVLRGVETNDDMYAAIDLVVDKIVRQIHKYKTRLAKRFKKQEAFHPETLATPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
EEE E+V+ K F + P+ V EAI Q+ + HDF+ F N ET
Sbjct: 112 ------------EEE----TIEVVKRKHFVVRPMDVEEAILQMNLIGHDFFMFFNAETES 155
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VY+R G YG+I P+
Sbjct: 156 MNVVYRRHDGFYGLIEPE 173
>gi|83589096|ref|YP_429105.1| sigma 54 modulation protein / SSU ribosomal protein S30P [Moorella
thermoacetica ATCC 39073]
gi|83572010|gb|ABC18562.1| SSU ribosomal protein S30P [Moorella thermoacetica ATCC 39073]
Length = 190
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 110/200 (55%), Gaps = 24/200 (12%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
S ++LII+GKNL +TD ++ ++ +++GK + ++ V E+ V L+V +
Sbjct: 14 SRMELIIRGKNLPVTDALRQYIAKRLGK-IERYLDGVDEIQVNLAVTRDK-------HVV 65
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + ++R EE +Y S+DLV +++++ K K + N+ K++
Sbjct: 66 EVTIPLNGY-ILRGEEATGDMYGSVDLVVEKLEKQIAKYKTR----------LNK-KIK- 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
++ A Q EEE+ ++R K F + P+ V EAI Q+ + H F+ F N ET
Sbjct: 113 --NGTIKEFAAGQPEEENGP-EPRLIRTKRFPIKPMPVEEAILQMNLLGHSFFVFSNAET 169
Query: 277 GEINIVYKRKAGGYGVIIPK 296
E+N++Y+R+ G YG+I P+
Sbjct: 170 EEVNVLYRRRDGNYGLIEPE 189
>gi|308175263|ref|YP_003921968.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens DSM 7]
gi|384161148|ref|YP_005543221.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens TA208]
gi|384166042|ref|YP_005547421.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens LL3]
gi|384170237|ref|YP_005551615.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens XH7]
gi|307608127|emb|CBI44498.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens DSM 7]
gi|328555236|gb|AEB25728.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens TA208]
gi|328913597|gb|AEB65193.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens LL3]
gi|341829516|gb|AEK90767.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens XH7]
Length = 187
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 103/201 (51%), Gaps = 28/201 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE K+GK V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVERKIGKLERYFEQSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP--VT 219
+R+E E +Y +IDL ++ ++R++RK H NR K RE
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRK----------HKTKVNR-KFREQGLPK 106
Query: 220 QVVEND--AD---VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
EN AD VQ E EDD+ EIVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 107 HYFENGSAADTVAVQDEIEDDS--PEIVRQKRFNLKPMDNEEAILQMNMLGHNFFVFTNA 164
Query: 275 ETGEINIVYKRKAGGYGVIIP 295
ET N+VY+R G YG+I P
Sbjct: 165 ETNLTNVVYRRNDGKYGLIEP 185
>gi|258645334|ref|ZP_05732803.1| ribosomal subunit interface protein [Dialister invisus DSM 15470]
gi|260402683|gb|EEW96230.1| ribosomal subunit interface protein [Dialister invisus DSM 15470]
Length = 177
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 100/196 (51%), Gaps = 24/196 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L ++GKNLE+T+ ++ +VE+ GK + + + + + +R K CEV
Sbjct: 1 MELTVRGKNLEITEALRTYVEKHTGKI---QRYFDKPIKINVLLRISNMTKT-----CEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T F GV+ R E ++ +Y SIDLV ++R++ K K + + + N+
Sbjct: 53 TAFV--DGVILRGVEKSDDMYKSIDLVFDKVERQIHKYKTRLAKRFKESNVLNK------ 104
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
Q V V E E EIVR K F + P++ EAI Q+ + H+F+ F N ET
Sbjct: 105 --QFVSEKESVPGESEF-----EIVRQKRFTINPMSPEEAILQMNLLGHNFFMFFNSETE 157
Query: 278 EINIVYKRKAGGYGVI 293
+ +VY+R G YG+I
Sbjct: 158 AMAVVYRRDDGKYGLI 173
>gi|375290365|ref|YP_005124905.1| hypothetical protein CD241_0636 [Corynebacterium diphtheriae 241]
gi|375292582|ref|YP_005127121.1| hypothetical protein CDB402_0611 [Corynebacterium diphtheriae INCA
402]
gi|376242340|ref|YP_005133192.1| hypothetical protein CDCE8392_0646 [Corynebacterium diphtheriae
CDCE 8392]
gi|376245198|ref|YP_005135437.1| hypothetical protein CDHC01_0636 [Corynebacterium diphtheriae HC01]
gi|376247969|ref|YP_005139913.1| hypothetical protein CDHC04_0602 [Corynebacterium diphtheriae HC04]
gi|376250791|ref|YP_005137672.1| hypothetical protein CDHC03_0623 [Corynebacterium diphtheriae HC03]
gi|376253802|ref|YP_005142261.1| hypothetical protein CDPW8_0700 [Corynebacterium diphtheriae PW8]
gi|376256602|ref|YP_005144493.1| hypothetical protein CDVA01_0584 [Corynebacterium diphtheriae VA01]
gi|376287185|ref|YP_005159751.1| hypothetical protein CDBH8_0659 [Corynebacterium diphtheriae BH8]
gi|376289856|ref|YP_005162103.1| hypothetical protein CDC7B_0652 [Corynebacterium diphtheriae C7
(beta)]
gi|376292754|ref|YP_005164428.1| hypothetical protein CDHC02_0642 [Corynebacterium diphtheriae HC02]
gi|419860312|ref|ZP_14382957.1| hypothetical protein W5M_03226 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|371580036|gb|AEX43703.1| hypothetical protein CD241_0636 [Corynebacterium diphtheriae 241]
gi|371582253|gb|AEX45919.1| hypothetical protein CDB402_0611 [Corynebacterium diphtheriae INCA
402]
gi|371584519|gb|AEX48184.1| hypothetical protein CDBH8_0659 [Corynebacterium diphtheriae BH8]
gi|372103252|gb|AEX66849.1| hypothetical protein CDC7B_0652 [Corynebacterium diphtheriae C7
(beta)]
gi|372105582|gb|AEX71644.1| hypothetical protein CDCE8392_0646 [Corynebacterium diphtheriae
CDCE 8392]
gi|372107828|gb|AEX73889.1| hypothetical protein CDHC01_0636 [Corynebacterium diphtheriae HC01]
gi|372110077|gb|AEX76137.1| hypothetical protein CDHC02_0642 [Corynebacterium diphtheriae HC02]
gi|372112295|gb|AEX78354.1| hypothetical protein CDHC03_0623 [Corynebacterium diphtheriae HC03]
gi|372114537|gb|AEX80595.1| hypothetical protein CDHC04_0602 [Corynebacterium diphtheriae HC04]
gi|372116886|gb|AEX69356.1| hypothetical protein CDPW8_0700 [Corynebacterium diphtheriae PW8]
gi|372119119|gb|AEX82853.1| hypothetical protein CDVA01_0584 [Corynebacterium diphtheriae VA01]
gi|387983520|gb|EIK56997.1| hypothetical protein W5M_03226 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 220
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 23/209 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
VK+ I G+N+E V H E+V + K S L D L+ E P RR E
Sbjct: 15 VKVTITGRNVE----VPEHFAERVNTKLAKISRL----DPTLNFFHVELQHEPNPRRSEQ 66
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES----DH----GR 204
+T K H + RAE ++ YA+++ + ++R LRK+K + S H G
Sbjct: 67 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPLGT 125
Query: 205 HMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENV 264
+K E + + D D +++ +D +IVR K P++V +A+ ++E V
Sbjct: 126 GEAAAELVKEAEVAREENKYDHDPYADKVEDVIPGQIVRTKEHPSTPMSVDDALSEMELV 185
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVI 293
HDFY F NEETG+ ++VY+R+A YG+I
Sbjct: 186 GHDFYLFVNEETGQPSVVYRRRAFDYGLI 214
>gi|431762437|ref|ZP_19550999.1| ribosomal subunit interface protein [Enterococcus faecium E3548]
gi|430625129|gb|ELB61779.1| ribosomal subunit interface protein [Enterococcus faecium E3548]
Length = 183
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 103/193 (53%), Gaps = 20/193 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T+ ++++VE+KVGK S V L V + K EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKLERYFSDAPDSTAHVNLKVYTEKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 59 PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNT 107
Query: 222 VENDADVQSEEEDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+ EEE++N + +IVR K + P+ EA+ Q+ + H+F+ F + ET +
Sbjct: 108 ADAAVLFNGEEENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTS 167
Query: 281 IVYKRKAGGYGVI 293
IVY+RK G YG+I
Sbjct: 168 IVYRRKDGKYGLI 180
>gi|147679089|ref|YP_001213304.1| ribosome-associated protein Y [Pelotomaculum thermopropionicum SI]
gi|146275186|dbj|BAF60935.1| ribosome-associated protein Y [Pelotomaculum thermopropionicum SI]
Length = 175
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++G+N+++TD +K++V ++VGK + K+ + V L+V R EV
Sbjct: 1 MKVQVRGRNIDVTDALKDYVVKRVGK-LDKYIDNFGDAQVTLAVE-------KESHRVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE +Y SIDLV +++++ K K K G N K P
Sbjct: 53 TIPVNGM-ILRGEESTGDMYTSIDLVVDKLEKQIEKYKGKLLKRGARFT--NDHKTAAPA 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
EEED +VR K F + P+ V EAI Q+ + H F+ F N ET +
Sbjct: 110 V----------PEEEDG---PRLVRTKRFAIKPMPVEEAILQMNLLGHSFFVFSNAETEQ 156
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VY+RK G YG+I P+
Sbjct: 157 VNVVYRRKDGNYGLIEPE 174
>gi|402814028|ref|ZP_10863622.1| ribosomal subunit interface protein [Paenibacillus alvei DSM 29]
gi|402507875|gb|EJW18396.1| ribosomal subunit interface protein [Paenibacillus alvei DSM 29]
Length = 182
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 32/199 (16%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--------VDVRLSVRGGEFGKGPRIR 154
++G+N+E+TD + ++VE+K+ S L R +V LSV +
Sbjct: 5 VRGQNIEVTDALLDYVEKKL-------SRLERYFETPPASGANVTLSVTKD-------VH 50
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
EVT+ ++RAE+ ++ +YASID V ++R++RK K K + R + L
Sbjct: 51 NIEVTI-PLPGLLLRAEDRSKDMYASIDGVVDKLERQIRKHKTKANRKFRQVGAAEHL-F 108
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
RE T V EEEDD E+VR K F + P+ V EAI Q+ + H+F+ F N
Sbjct: 109 REQSTS-----TPVAVEEEDDL---EVVRTKRFTLKPMDVEEAILQMNMIGHNFFVFSNA 160
Query: 275 ETGEINIVYKRKAGGYGVI 293
E+ E+N+VY+R G YG+I
Sbjct: 161 ESKEVNVVYRRDDGRYGLI 179
>gi|399924829|ref|ZP_10782187.1| SSU ribosomal protein S30P [Peptoniphilus rhinitidis 1-13]
Length = 175
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 102/189 (53%), Gaps = 22/189 (11%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
GKN+ELT+++KN E+K K + EV+ R+ F + EVT+F K
Sbjct: 7 GKNIELTESLKNVAEKKFSKL---DKYFSEEVEARVV-----FSTVREEQTVEVTIFLPK 58
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
++RAEE + +Y+SID + R++RK K K LK + + +
Sbjct: 59 -TIIRAEETTDDMYSSIDQAVDALARQIRKHKTK-------------LKRKYQNNESIRF 104
Query: 225 DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYK 284
D ++ E++ + ++IV+ K FE+ P++ EA+ Q+E ++H+F+ F + ++ + IVYK
Sbjct: 105 DEIMEREKDQEEPENKIVKRKNFELNPMSEEEAVLQMELLNHNFFVFLDADSERVAIVYK 164
Query: 285 RKAGGYGVI 293
RK G YG I
Sbjct: 165 RKDGNYGKI 173
>gi|427393821|ref|ZP_18887461.1| ribosomal subunit interface protein [Alloiococcus otitis ATCC
51267]
gi|425730436|gb|EKU93272.1| ribosomal subunit interface protein [Alloiococcus otitis ATCC
51267]
Length = 192
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 111/200 (55%), Gaps = 24/200 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+TD ++++ E+K+ K + + VD ++++ R + EVT+
Sbjct: 6 IRGENIEVTDALRDYTEKKISKIERYFNKELTNVDAHVNLKI----YSDRSAKVEVTV-P 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE ++ +Y SIDLV+ ++R++RK K K NR RE +++
Sbjct: 61 LSNIVLRAEETSQDMYGSIDLVADKLERQIRKYKTK----------VNRKIRRENLSRPE 110
Query: 223 ENDADVQSEEE---DDNFVDE------IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
D D+ + DDN D+ IVR+K ++ P++ EA+ Q++ + HDF+ F +
Sbjct: 111 AIDPDLWDSDVPALDDNSKDDGDVSSSIVRIKQVDLKPMSPEEAVLQMDLLGHDFFIFED 170
Query: 274 EETGEINIVYKRKAGGYGVI 293
ET +++VYKR YG++
Sbjct: 171 AETEGVSLVYKRHDDQYGLL 190
>gi|257873810|ref|ZP_05653463.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
casseliflavus EC10]
gi|257807974|gb|EEV36796.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
casseliflavus EC10]
Length = 185
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 109/195 (55%), Gaps = 22/195 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + ++ + V E ++++ + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGK-LERYFNDVPEATAHVNLKV----YTEKTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
V+RAEE + +YASIDLV ++R++RK K K NR K RE V
Sbjct: 60 LPFLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRE-TALVP 107
Query: 223 ENDADVQSEEEDDNFVD----EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
D D+ + E +D + +IVR K + P+ EA+ Q+ + H+F+ F + ET
Sbjct: 108 PTDGDLFTTEANDEETNGSDLDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNG 167
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 168 TSIVYRRKDGKYGLI 182
>gi|407980386|ref|ZP_11161175.1| ribosome-associated inhibitor A [Bacillus sp. HYC-10]
gi|407412867|gb|EKF34622.1| ribosome-associated inhibitor A [Bacillus sp. HYC-10]
Length = 187
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 16/197 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T +++HVE+K+GK + +VD ++V + + EVT+
Sbjct: 5 VRGENIEVTPALRDHVEKKIGKL---ERYFESDVDASVNVNLKFYNDQES--KVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+RAE E +Y ++DL +S ++R++RK K K + + F ++ +
Sbjct: 59 MTDLALRAEVHNEDMYNAVDLAASKLERQIRKHKTKVN------RKFREQGAKKHLFAGG 112
Query: 223 ENDADVQSEEEDDNFVDE--IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
ADV + DD VDE IVR K F + P+ EAI Q+ + H F+ F N ET N
Sbjct: 113 NGAADVAVQ--DDEEVDETEIVRQKRFNLKPMDSEEAILQMNMLGHSFFVFTNAETNLTN 170
Query: 281 IVYKRKAGGYGVIIPKG 297
+VY+R G YG+I P
Sbjct: 171 VVYRRNDGKYGLIEPNA 187
>gi|394991072|ref|ZP_10383880.1| YvyD [Bacillus sp. 916]
gi|393808055|gb|EJD69366.1| YvyD [Bacillus sp. 916]
Length = 188
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 99/198 (50%), Gaps = 21/198 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE K+GK V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVERKIGKLERYFEQSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKVREP 217
+R+E E +Y +IDL ++ ++R++RK + K D G F
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTKVNRKFRDQGLPKHYFEN------ 111
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ VQ E EDD+ EIVR K F + P+ EAI Q+ + H+F+ F N ET
Sbjct: 112 -GSAADTGVAVQDEIEDDS--PEIVRQKRFNLKPMDNEEAILQMNMLGHNFFVFTNAETN 168
Query: 278 EINIVYKRKAGGYGVIIP 295
N+VY+R G YG+I P
Sbjct: 169 LTNVVYRRNDGKYGLIEP 186
>gi|269797860|ref|YP_003311760.1| sigma 54 modulation protein/ribosomal protein S30EA [Veillonella
parvula DSM 2008]
gi|269094489|gb|ACZ24480.1| sigma 54 modulation protein/ribosomal protein S30EA [Veillonella
parvula DSM 2008]
Length = 175
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+E+TD ++ ++E+++ K L R D L + E+
Sbjct: 1 MKVAIRGKNIEVTDALRAYIEKRLSK-------LTRYFDDELDAQAV-LSVVKDKSTIEL 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F K V+R E + +YA+IDLV I R++ K K + + + + F+ + PV
Sbjct: 53 TCFVDK-IVLRGVETNDDMYAAIDLVVDKIVRQIHKYKTRLAKRFKKQEAFHPEALAAPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
EEE E+V+ K F + P+ V EAI Q+ + HDF+ F N ET
Sbjct: 112 ------------EEE----TIEVVKRKHFVVRPMDVEEAILQMNLIGHDFFMFFNAETEA 155
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VY+R G YG+I P+
Sbjct: 156 MNVVYRRHDGFYGLIEPE 173
>gi|38233305|ref|NP_939072.1| hypothetical protein DIP0698 [Corynebacterium diphtheriae NCTC
13129]
gi|38199564|emb|CAE49215.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 222
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 23/209 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
VK+ I G+N+E V H E+V + K S L D L+ E P RR E
Sbjct: 17 VKVTITGRNVE----VPEHFAERVNTKLAKISRL----DPTLNFFHVELQHEPNPRRSEQ 68
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES----DH----GR 204
+T K H + RAE ++ YA+++ + ++R LRK+K + S H G
Sbjct: 69 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPLGT 127
Query: 205 HMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENV 264
+K E + + D D +++ +D +IVR K P++V +A+ ++E V
Sbjct: 128 GEAAAELVKEAEVAREENKYDHDPYADKVEDVIPGQIVRTKEHPSTPMSVDDALSEMELV 187
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVI 293
HDFY F NEETG+ ++VY+R+A YG+I
Sbjct: 188 GHDFYLFVNEETGQPSVVYRRRAFDYGLI 216
>gi|206970023|ref|ZP_03230976.1| ribosomal subunit interface protein [Bacillus cereus AH1134]
gi|228955433|ref|ZP_04117438.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229072642|ref|ZP_04205844.1| Ribosome-associated factor Y [Bacillus cereus F65185]
gi|229082401|ref|ZP_04214864.1| Ribosome-associated factor Y [Bacillus cereus Rock4-2]
gi|229181450|ref|ZP_04308778.1| Ribosome-associated factor Y [Bacillus cereus 172560W]
gi|229193436|ref|ZP_04320383.1| Ribosome-associated factor Y [Bacillus cereus ATCC 10876]
gi|365162861|ref|ZP_09358985.1| ribosomal subunit interface protein [Bacillus sp. 7_6_55CFAA_CT2]
gi|423411069|ref|ZP_17388189.1| ribosomal subunit interface protein [Bacillus cereus BAG3O-2]
gi|423427279|ref|ZP_17404310.1| ribosomal subunit interface protein [Bacillus cereus BAG3X2-2]
gi|423433146|ref|ZP_17410150.1| ribosomal subunit interface protein [Bacillus cereus BAG4O-1]
gi|423438589|ref|ZP_17415570.1| ribosomal subunit interface protein [Bacillus cereus BAG4X12-1]
gi|423506929|ref|ZP_17483518.1| ribosomal subunit interface protein [Bacillus cereus HD73]
gi|449092247|ref|YP_007424688.1| ribosomal subunit interface protein [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|206734600|gb|EDZ51769.1| ribosomal subunit interface protein [Bacillus cereus AH1134]
gi|228589968|gb|EEK47840.1| Ribosome-associated factor Y [Bacillus cereus ATCC 10876]
gi|228602025|gb|EEK59518.1| Ribosome-associated factor Y [Bacillus cereus 172560W]
gi|228700833|gb|EEL53356.1| Ribosome-associated factor Y [Bacillus cereus Rock4-2]
gi|228710618|gb|EEL62591.1| Ribosome-associated factor Y [Bacillus cereus F65185]
gi|228804225|gb|EEM50839.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|363617589|gb|EHL68976.1| ribosomal subunit interface protein [Bacillus sp. 7_6_55CFAA_CT2]
gi|401108085|gb|EJQ16017.1| ribosomal subunit interface protein [Bacillus cereus BAG3O-2]
gi|401109464|gb|EJQ17388.1| ribosomal subunit interface protein [Bacillus cereus BAG3X2-2]
gi|401113058|gb|EJQ20930.1| ribosomal subunit interface protein [Bacillus cereus BAG4O-1]
gi|401116204|gb|EJQ24046.1| ribosomal subunit interface protein [Bacillus cereus BAG4X12-1]
gi|402445740|gb|EJV77608.1| ribosomal subunit interface protein [Bacillus cereus HD73]
gi|449026004|gb|AGE81167.1| ribosomal subunit interface protein [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 180
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 218 ---VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
T + +A V +E + E+VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GSMKTNFILPEA-VAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNA 158
Query: 275 ETGEINIVYKRKAGGYGVI 293
+T E N+VY RK G YG+I
Sbjct: 159 DTNETNVVYGRKDGKYGLI 177
>gi|423394623|ref|ZP_17371824.1| ribosomal subunit interface protein [Bacillus cereus BAG2X1-1]
gi|423405491|ref|ZP_17382640.1| ribosomal subunit interface protein [Bacillus cereus BAG2X1-3]
gi|401657405|gb|EJS74915.1| ribosomal subunit interface protein [Bacillus cereus BAG2X1-1]
gi|401661107|gb|EJS78577.1| ribosomal subunit interface protein [Bacillus cereus BAG2X1-3]
Length = 180
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE+ +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEENNSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 218 ---VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
T + +A V +E + E+VR K F++ P+ V EAI Q++ + H F+ F N
Sbjct: 100 GSVKTNFILPEA-VAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNA 158
Query: 275 ETGEINIVYKRKAGGYGVI 293
+T E N+VY RK G YG+I
Sbjct: 159 DTNETNVVYGRKDGKYGLI 177
>gi|30023223|ref|NP_834854.1| sigma (54) modulation protein / SSU ribosomal protein S30P
[Bacillus cereus ATCC 14579]
gi|218234476|ref|YP_002369963.1| ribosomal subunit interface protein [Bacillus cereus B4264]
gi|228923913|ref|ZP_04087190.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228961425|ref|ZP_04123038.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229050849|ref|ZP_04194401.1| Ribosome-associated factor Y [Bacillus cereus AH676]
gi|229112596|ref|ZP_04242133.1| Ribosome-associated factor Y [Bacillus cereus Rock1-15]
gi|229130434|ref|ZP_04259391.1| Ribosome-associated factor Y [Bacillus cereus BDRD-Cer4]
gi|229147718|ref|ZP_04276061.1| Ribosome-associated factor Y [Bacillus cereus BDRD-ST24]
gi|229153343|ref|ZP_04281521.1| Ribosome-associated factor Y [Bacillus cereus m1550]
gi|296505609|ref|YP_003667309.1| sigma (54) modulation protein/SSU ribosomal protein S30P [Bacillus
thuringiensis BMB171]
gi|423583337|ref|ZP_17559448.1| ribosomal subunit interface protein [Bacillus cereus VD014]
gi|423589007|ref|ZP_17565093.1| ribosomal subunit interface protein [Bacillus cereus VD045]
gi|423631932|ref|ZP_17607679.1| ribosomal subunit interface protein [Bacillus cereus VD154]
gi|423633968|ref|ZP_17609621.1| ribosomal subunit interface protein [Bacillus cereus VD156]
gi|423644341|ref|ZP_17619958.1| ribosomal subunit interface protein [Bacillus cereus VD166]
gi|423651029|ref|ZP_17626599.1| ribosomal subunit interface protein [Bacillus cereus VD169]
gi|423658102|ref|ZP_17633401.1| ribosomal subunit interface protein [Bacillus cereus VD200]
gi|29898783|gb|AAP12055.1| Probable Sigma (54) modulation protein / SSU ribosomal protein S30P
[Bacillus cereus ATCC 14579]
gi|218162433|gb|ACK62425.1| ribosomal subunit interface protein [Bacillus cereus B4264]
gi|228629947|gb|EEK86598.1| Ribosome-associated factor Y [Bacillus cereus m1550]
gi|228635731|gb|EEK92218.1| Ribosome-associated factor Y [Bacillus cereus BDRD-ST24]
gi|228653029|gb|EEL08910.1| Ribosome-associated factor Y [Bacillus cereus BDRD-Cer4]
gi|228670976|gb|EEL26283.1| Ribosome-associated factor Y [Bacillus cereus Rock1-15]
gi|228722505|gb|EEL73898.1| Ribosome-associated factor Y [Bacillus cereus AH676]
gi|228798239|gb|EEM45239.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228835712|gb|EEM81076.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|296326661|gb|ADH09589.1| sigma (54) modulation protein/SSU ribosomal protein S30P [Bacillus
thuringiensis BMB171]
gi|401209397|gb|EJR16156.1| ribosomal subunit interface protein [Bacillus cereus VD014]
gi|401225395|gb|EJR31944.1| ribosomal subunit interface protein [Bacillus cereus VD045]
gi|401263154|gb|EJR69287.1| ribosomal subunit interface protein [Bacillus cereus VD154]
gi|401271406|gb|EJR77423.1| ribosomal subunit interface protein [Bacillus cereus VD166]
gi|401280349|gb|EJR86270.1| ribosomal subunit interface protein [Bacillus cereus VD169]
gi|401281874|gb|EJR87779.1| ribosomal subunit interface protein [Bacillus cereus VD156]
gi|401288354|gb|EJR94107.1| ribosomal subunit interface protein [Bacillus cereus VD200]
Length = 180
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 218 ---VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
T + +A V +E + E+VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GSIKTNFILPEA-VAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNA 158
Query: 275 ETGEINIVYKRKAGGYGVI 293
+T E N+VY RK G YG+I
Sbjct: 159 DTNETNVVYGRKDGKYGLI 177
>gi|229099615|ref|ZP_04230543.1| Ribosome-associated factor Y [Bacillus cereus Rock3-29]
gi|229105792|ref|ZP_04236421.1| Ribosome-associated factor Y [Bacillus cereus Rock3-28]
gi|229118680|ref|ZP_04248032.1| Ribosome-associated factor Y [Bacillus cereus Rock1-3]
gi|407707659|ref|YP_006831244.1| transcription termination factor Rho [Bacillus thuringiensis MC28]
gi|423377017|ref|ZP_17354301.1| ribosomal subunit interface protein [Bacillus cereus BAG1O-2]
gi|423440120|ref|ZP_17417026.1| ribosomal subunit interface protein [Bacillus cereus BAG4X2-1]
gi|423449721|ref|ZP_17426600.1| ribosomal subunit interface protein [Bacillus cereus BAG5O-1]
gi|423463193|ref|ZP_17439961.1| ribosomal subunit interface protein [Bacillus cereus BAG6O-1]
gi|423532546|ref|ZP_17508964.1| ribosomal subunit interface protein [Bacillus cereus HuB2-9]
gi|423548423|ref|ZP_17524781.1| ribosomal subunit interface protein [Bacillus cereus HuB5-5]
gi|423619121|ref|ZP_17594954.1| ribosomal subunit interface protein [Bacillus cereus VD115]
gi|423621784|ref|ZP_17597562.1| ribosomal subunit interface protein [Bacillus cereus VD148]
gi|228664872|gb|EEL20362.1| Ribosome-associated factor Y [Bacillus cereus Rock1-3]
gi|228677681|gb|EEL31929.1| Ribosome-associated factor Y [Bacillus cereus Rock3-28]
gi|228683911|gb|EEL37861.1| Ribosome-associated factor Y [Bacillus cereus Rock3-29]
gi|401128002|gb|EJQ35709.1| ribosomal subunit interface protein [Bacillus cereus BAG5O-1]
gi|401176097|gb|EJQ83295.1| ribosomal subunit interface protein [Bacillus cereus HuB5-5]
gi|401251834|gb|EJR58104.1| ribosomal subunit interface protein [Bacillus cereus VD115]
gi|401262813|gb|EJR68950.1| ribosomal subunit interface protein [Bacillus cereus VD148]
gi|401639619|gb|EJS57356.1| ribosomal subunit interface protein [Bacillus cereus BAG1O-2]
gi|402419891|gb|EJV52163.1| ribosomal subunit interface protein [Bacillus cereus BAG4X2-1]
gi|402422064|gb|EJV54306.1| ribosomal subunit interface protein [Bacillus cereus BAG6O-1]
gi|402464800|gb|EJV96488.1| ribosomal subunit interface protein [Bacillus cereus HuB2-9]
gi|407385344|gb|AFU15845.1| Ribosome-associated factor Y [Bacillus thuringiensis MC28]
Length = 180
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 218 ---VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
T + +A V +E + E+VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GSVKTNFILPEA-VAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNA 158
Query: 275 ETGEINIVYKRKAGGYGVI 293
+T E N+VY RK G YG+I
Sbjct: 159 DTNETNVVYGRKDGKYGLI 177
>gi|423718625|ref|ZP_17692807.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Geobacillus thermoglucosidans TNO-09.020]
gi|383368227|gb|EID45500.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Geobacillus thermoglucosidans TNO-09.020]
Length = 183
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 31/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+N+E+T ++ +VE+K+GK +++ V V V L V + GK EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKIGKLERYFENTEDV-HVHVNLKVYNDKQGK------IEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---P 217
++RAEE + +YA+IDLV+ ++R++RK H NR K+R+
Sbjct: 58 -PMPQLLLRAEERHDDMYAAIDLVADKLERQIRK----------HKTKVNR-KLRDRDKE 105
Query: 218 VTQVVENDADVQSE---EEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
V QV A VQ+ E+++ EIVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 106 VKQV----ATVQTNAPAEDNEEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNA 161
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET NIVY+RK G YG+I
Sbjct: 162 ETNRTNIVYRRKDGKYGLI 180
>gi|154687646|ref|YP_001422807.1| hypothetical protein RBAM_032460 [Bacillus amyloliquefaciens FZB42]
gi|375363966|ref|YP_005132005.1| hypothetical protein BACAU_3276 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384267065|ref|YP_005422772.1| hypothetical protein BANAU_3435 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387900159|ref|YP_006330455.1| putative sigma-54 modulation protein [Bacillus amyloliquefaciens
Y2]
gi|421730071|ref|ZP_16169200.1| putative sigma-54 modulation protein [Bacillus amyloliquefaciens
subsp. plantarum M27]
gi|429506824|ref|YP_007188008.1| sigma-54 modulation protein [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451345317|ref|YP_007443948.1| sigma-54 modulation protein [Bacillus amyloliquefaciens IT-45]
gi|452857153|ref|YP_007498836.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|154353497|gb|ABS75576.1| YvyD [Bacillus amyloliquefaciens FZB42]
gi|371569960|emb|CCF06810.1| putative protein yvyD [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|380500418|emb|CCG51456.1| putative protein yvyD [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|387174269|gb|AFJ63730.1| putative sigma-54 modulation protein [Bacillus amyloliquefaciens
Y2]
gi|407076037|gb|EKE49021.1| putative sigma-54 modulation protein [Bacillus amyloliquefaciens
subsp. plantarum M27]
gi|429488414|gb|AFZ92338.1| putative sigma-54 modulation protein [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
gi|449849075|gb|AGF26067.1| sigma-54 modulation protein [Bacillus amyloliquefaciens IT-45]
gi|452081413|emb|CCP23181.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 188
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 104/202 (51%), Gaps = 29/202 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE K+GK V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVERKIGKLERYFEQSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP--VT 219
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGLPK 106
Query: 220 QVVEND--AD----VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
EN AD VQ E EDD+ EIVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 107 HYFENGSAADTGVAVQDEIEDDS--PEIVRQKRFNLKPMDNEEAILQMNMLGHNFFVFTN 164
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
ET N+VY+R G YG+I P
Sbjct: 165 AETNLTNVVYRRNDGKYGLIEP 186
>gi|423542191|ref|ZP_17518581.1| ribosomal subunit interface protein [Bacillus cereus HuB4-10]
gi|401169528|gb|EJQ76774.1| ribosomal subunit interface protein [Bacillus cereus HuB4-10]
Length = 180
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 218 ---VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
T + +A V +E + E+VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GSVKTNFILPEA-VAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNA 158
Query: 275 ETGEINIVYKRKAGGYGVI 293
+T E N+VY RK G YG+I
Sbjct: 159 DTNETNVVYGRKDGKYGLI 177
>gi|238019426|ref|ZP_04599852.1| hypothetical protein VEIDISOL_01295 [Veillonella dispar ATCC 17748]
gi|237864125|gb|EEP65415.1| hypothetical protein VEIDISOL_01295 [Veillonella dispar ATCC 17748]
Length = 175
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+E+TD ++ ++E+++ K L R D L + E+
Sbjct: 1 MKVAIRGKNIEVTDALRAYIEKRLSK-------LTRYFDDELDAQAV-LSVVKDKSTVEL 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F K V+R E + +YA+IDLV I R++ K K + + + + F+ + PV
Sbjct: 53 TCFVDK-IVLRGVETNDDMYAAIDLVIDKIVRQIHKHKTRLAKRFKKQEAFHPEALAAPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
EEE E+V+ K F + P+ V EAI Q+ + HDF+ F N ET
Sbjct: 112 ------------EEE----TIEVVKRKHFAVRPMDVEEAILQMNLIGHDFFMFFNAETEA 155
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VY+R G YG+I P+
Sbjct: 156 MNVVYRRHDGFYGLIEPE 173
>gi|163789842|ref|ZP_02184278.1| ribosomal subunit interface protein [Carnobacterium sp. AT7]
gi|159874782|gb|EDP68850.1| ribosomal subunit interface protein [Carnobacterium sp. AT7]
Length = 180
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 111/194 (57%), Gaps = 19/194 (9%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
K ++G+N+E+T ++++VE+KVGK V K+ + V E ++++ + + EVT
Sbjct: 3 KYNVRGENIEVTAAIRSYVEKKVGK-VEKYFNDVPEATAHVNLKT----YSDKTAKVEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ + V+RAEE + +Y S+DLVS ++R++RK K K + R +G N V PV
Sbjct: 58 I-PLPYLVLRAEETSPDLYGSVDLVSDKLERQMRKYKTKIN---RRTRGSN--VVVPPVL 111
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
E +S E++ N IVR K + P+ EA+ Q++ + H+F+ F + +T
Sbjct: 112 PGEEQ----ESHEDEVN----IVRTKRLSLKPMDSEEAVLQMDMLGHNFFIFEDADTNGT 163
Query: 280 NIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 164 SIVYRRKDGKYGLI 177
>gi|392530218|ref|ZP_10277355.1| ribosome-associated inhibitor protein Y [Carnobacterium
maltaromaticum ATCC 35586]
gi|414084916|ref|YP_006993627.1| ribosomal subunit interface protein [Carnobacterium maltaromaticum
LMA28]
gi|412998503|emb|CCO12312.1| ribosomal subunit interface protein [Carnobacterium maltaromaticum
LMA28]
Length = 179
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 104/194 (53%), Gaps = 26/194 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T ++ +VE+KVGK S + V L V + K EVT+
Sbjct: 6 VRGENIEVTAAIREYVEKKVGKLERYFSDVPDATAHVNLKVYSDKTAK------VEVTV- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YAS+DLV ++R++RK K K + R KGF+ V
Sbjct: 59 PLPYLVLRAEETSPDLYASVDLVVDKLERQMRKYKTKINRKSRE-KGFD---------FV 108
Query: 222 VENDA--DVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
V N A DV + E D IVR K + P+ EA+ Q++ + H+F+ F + ET I
Sbjct: 109 VPNAAELDVATGELD------IVRTKRVSLKPMDSEEAVLQMDMLGHNFFIFEDAETNGI 162
Query: 280 NIVYKRKAGGYGVI 293
+IVY+R G YG+I
Sbjct: 163 SIVYRRTDGKYGLI 176
>gi|300853465|ref|YP_003778449.1| ribosome-associated protein [Clostridium ljungdahlii DSM 13528]
gi|300433580|gb|ADK13347.1| predicted ribosome-associated protein [Clostridium ljungdahlii DSM
13528]
Length = 175
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 42/206 (20%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-------VLKHSHLVREVDVRLSVRGGEFGKGP 151
+K+ ++GKN+ +TD +KN VE+K+ K V+ H+ L SV+ K
Sbjct: 1 MKITVKGKNIVVTDALKNAVEKKLCKLEKYFNPDVVAHATL--------SVQ-----KTR 47
Query: 152 RIRRCEVTL-FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
+I EVT+ F GV+ R EE +YASIDLV ++R++RK K K ++
Sbjct: 48 QI--IEVTIPFG---GVILRGEEGNSDMYASIDLVVDKLERQIRKQKTK------LLRRN 96
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFY 269
N +R Q + ++++ +E+ +IVR K F + P++ EA+ Q+E + H F+
Sbjct: 97 NSESLR---FQCIPDESEKDEQEQ------KIVRTKKFAIKPMSSEEAVLQMELLGHSFF 147
Query: 270 GFRNEETGEINIVYKRKAGGYGVIIP 295
+++ E GE+N+VYKR+ G YG+I P
Sbjct: 148 VYQDAENGEVNVVYKRRDGNYGLIEP 173
>gi|421858649|ref|ZP_16290913.1| ribosome-associated protein Y [Paenibacillus popilliae ATCC 14706]
gi|410831822|dbj|GAC41350.1| ribosome-associated protein Y [Paenibacillus popilliae ATCC 14706]
Length = 180
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 30/197 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+++E+TD + ++VE+K+G+ + +V+V LSV IR +
Sbjct: 5 VRGQHIEVTDALLDYVEKKLGRLERYFEAPPTSDVNVTLSV----------IRDLHIVEV 54
Query: 162 T--KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
T ++RAE+ ++ +YASID V+ ++R++RK K K NR K R+ T
Sbjct: 55 TIPLPGLLLRAEDRSKDMYASIDSVTDKLERQIRKHKTK----------VNR-KFRQTGT 103
Query: 220 QV---VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ + A V +EED E+VRMK F + P+ V EAI Q+ + H F+ F N ET
Sbjct: 104 EAHLFSDVAAPVPVDEEDQL---EVVRMKRFTLKPMDVEEAILQMNMIGHSFFVFSNAET 160
Query: 277 GEINIVYKRKAGGYGVI 293
E+N+VY+R G YG+I
Sbjct: 161 KEVNVVYRRDDGRYGLI 177
>gi|376259769|ref|YP_005146489.1| ribosomal subunit interface protein [Clostridium sp. BNL1100]
gi|373943763|gb|AEY64684.1| ribosomal subunit interface protein [Clostridium sp. BNL1100]
Length = 176
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 113/204 (55%), Gaps = 35/204 (17%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CE 157
+ +II GKN+E+T+ ++ V ++V K + K + EV V LSV+ R+ + E
Sbjct: 1 MNIIISGKNIEITEALREKVTKRV-KKLEKFFNSDTEVHVTLSVQ--------RVSQIVE 51
Query: 158 VTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
+T+ +GV +RAE+ E +Y SID +I+R++RK K RL+ R
Sbjct: 52 ITI--PFNGVTLRAEDQNEDMYTSIDRAVDLIERQIRKNK-------------TRLERR- 95
Query: 217 PVTQVVENDADVQSEEEDDNFVDE----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
END V + + +D+ +E +VR K F + P+ V EAI Q+ + H+F+ F
Sbjct: 96 ----FHENDFRVDNSKFNDDVQEETEFKVVRSKRFAIKPMDVEEAILQMNLLGHEFFMFY 151
Query: 273 NEETGEINIVYKRKAGGYGVIIPK 296
N ++ ++N+VYKRK G YG+I P+
Sbjct: 152 NADSRQVNVVYKRKDGNYGLIEPE 175
>gi|365839540|ref|ZP_09380776.1| ribosomal subunit interface protein [Anaeroglobus geminatus F0357]
gi|364564508|gb|EHM42272.1| ribosomal subunit interface protein [Anaeroglobus geminatus F0357]
Length = 174
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 108/200 (54%), Gaps = 37/200 (18%)
Query: 103 IQGKNLELTDTVKNHV---EEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRCE 157
++GKNLE+TD +KN+V E+KV K + EV+++ LSV K +I E
Sbjct: 5 VRGKNLEVTDALKNYVLKHEKKVTK------YFESEVNLQAMLSVE-----KERKI--AE 51
Query: 158 VTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
+TL K GVV R E E +YA+IDL I + +R+I + ++ R +K +
Sbjct: 52 LTL--KVDGVVLRVVEANEDMYAAIDL---IFDKMVRQIHKYKTRIARRIKSGS------ 100
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ ++ E D+ F E+VR K F P+ V EAI Q+ V HDF+ F N ET
Sbjct: 101 -----FQTALATEAPESDEVF--EVVRTKKFAARPMDVEEAILQMNLVGHDFFVFLNAET 153
Query: 277 GEINIVYKRKAGGYGVIIPK 296
I++VYKRK G YG+I P+
Sbjct: 154 ENISVVYKRKHGKYGLIEPE 173
>gi|329768615|ref|ZP_08260100.1| hypothetical protein HMPREF0428_01797 [Gemella haemolysans M341]
gi|328836448|gb|EGF86111.1| hypothetical protein HMPREF0428_01797 [Gemella haemolysans M341]
Length = 181
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+NLE+T ++ +VE KV K + K+ E +V + + + K ++ E+T+
Sbjct: 6 VRGENLEITQAIREYVENKVSK-LEKYFADSLEANVYANAKVYKNNK----KKIEITVPL 60
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K GV +RAEE E +YA++DLV ++R++RK K K + GR KGF
Sbjct: 61 K--GVTLRAEETNEDLYAAVDLVVDKLERQMRKHKTKINRKGRE-KGF------------ 105
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
VE + EE + + ++K ++ P+T EA+ Q+E + HDF+ F + T EI++
Sbjct: 106 VEENLLTNELEEAEETTLDFGKVKQLKVEPMTREEAVFQMELLGHDFFAFLDSNTNEISV 165
Query: 282 VYKRKAGGYGVI 293
VYKR+ GYGV+
Sbjct: 166 VYKRRDTGYGVL 177
>gi|303229878|ref|ZP_07316654.1| ribosomal subunit interface protein [Veillonella atypica
ACS-134-V-Col7a]
gi|303232150|ref|ZP_07318853.1| ribosomal subunit interface protein [Veillonella atypica
ACS-049-V-Sch6]
gi|401679763|ref|ZP_10811687.1| ribosomal subunit interface protein [Veillonella sp. ACP1]
gi|429759676|ref|ZP_19292172.1| ribosomal subunit interface protein [Veillonella atypica KON]
gi|302513256|gb|EFL55295.1| ribosomal subunit interface protein [Veillonella atypica
ACS-049-V-Sch6]
gi|302515434|gb|EFL57400.1| ribosomal subunit interface protein [Veillonella atypica
ACS-134-V-Col7a]
gi|400218890|gb|EJO49761.1| ribosomal subunit interface protein [Veillonella sp. ACP1]
gi|429179266|gb|EKY20522.1| ribosomal subunit interface protein [Veillonella atypica KON]
Length = 177
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 105/200 (52%), Gaps = 27/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRC 156
+K+ I+GKN+E+T ++ +VE+++GK + E+D + LSV +
Sbjct: 1 MKVAIRGKNIEVTAALREYVEKRLGKLT---RYFDDELDAQAVLSVVRDK-------ATI 50
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
E+T F K V+R E + +YA+IDLV I R++ K K R K F R +
Sbjct: 51 EITCFVDK-IVLRGVETNDDMYAAIDLVVDKIVRQIHKHK------TRLAKRFKRQEAFH 103
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
P V D V+ E+ E+V+ K F + P+ V EAI Q+ + HDF+ F N ET
Sbjct: 104 P--DVAPLDTPVEEEKI------EVVKRKHFAVRPMDVEEAILQMNLIGHDFFMFFNAET 155
Query: 277 GEINIVYKRKAGGYGVIIPK 296
+N+VY+R G YG+I P+
Sbjct: 156 ETMNVVYRRHDGFYGLIEPE 175
>gi|384183051|ref|YP_005568813.1| ribosomal subunit interface protein [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324329135|gb|ADY24395.1| ribosomal subunit interface protein [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 180
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 109/196 (55%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSMKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
T V +E + E+VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 110 ET--------VAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|404330084|ref|ZP_10970532.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Sporolactobacillus vineae DSM 21990 = SL153]
Length = 187
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 107/196 (54%), Gaps = 17/196 (8%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
L I+G+N+ +T ++K + E+++GK + K+ + L V + V E + EV
Sbjct: 3 LNIRGENIAVTPSLKEYAEKRIGK-LEKYFGAPLAASARVNMRVHNKE-------QVIEV 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP- 217
T+ + ++RAE E +YA+IDLV + ++R+++K K K + R R ++ P
Sbjct: 55 TIPIQGL-LLRAEVGQEDMYAAIDLVVTKLERQIKKYKTKINRKSRQ---DTRQAIQTPG 110
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + A + E D EIVR K F + P+T EAI Q+E + H F+ F N + G
Sbjct: 111 AGTLTQTTAAAGQKTEAD--APEIVRRKSFVLKPMTAKEAILQMEMLGHTFFVFNNADNG 168
Query: 278 EINIVYKRKAGGYGVI 293
E ++VY+RK G YG+I
Sbjct: 169 ETSVVYERKDGRYGLI 184
>gi|229916625|ref|YP_002885271.1| sigma 54 modulation protein/ribosomal protein S30EA
[Exiguobacterium sp. AT1b]
gi|229468054|gb|ACQ69826.1| sigma 54 modulation protein/ribosomal protein S30EA
[Exiguobacterium sp. AT1b]
Length = 187
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD-----VRLSVRGGEFGKGPRIRRCE 157
I+G+N+E+T +K++VE+K+ K + D V L V + ++ E
Sbjct: 5 IRGENIEVTPAIKDYVEKKLEKLT---RYFTTPTDAQTAYVNLKVYNEK-------QKVE 54
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + ++RAE+ +YA+IDLV ++R++RK K K + GR +G V E
Sbjct: 55 VTI-PMPNLLLRAEDINLDMYAAIDLVVDKLERQIRKHKTKLNRKGRGKEG----GVGE- 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ +E D + ++D E+VR K F + P+ EAI Q++ + H F+ F + ETG
Sbjct: 109 YFKSLEGPDDTPAVYDEDEAELELVRTKRFTLKPMDTEEAILQMDMLGHSFFVFSDAETG 168
Query: 278 EINIVYKRKAGGYGVIIPK 296
N+VY+RK G YG+I P+
Sbjct: 169 NTNVVYRRKDGKYGLIEPE 187
>gi|312109504|ref|YP_003987820.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Geobacillus sp. Y4.1MC1]
gi|336233897|ref|YP_004586513.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Geobacillus thermoglucosidasius C56-YS93]
gi|311214605|gb|ADP73209.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. Y4.1MC1]
gi|335360752|gb|AEH46432.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
thermoglucosidasius C56-YS93]
Length = 183
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 110/199 (55%), Gaps = 31/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+N+E+T ++ +VE+K+GK +++ + V V L V + GK EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKIGKLERYFENTENI-HVHVNLKVYNDKQGK------IEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---P 217
++RAEE + +YA+IDLV+ ++R++RK H NR K+R+
Sbjct: 58 -PMPQLLLRAEERHDDMYAAIDLVADKLERQIRK----------HKTKVNR-KLRDRDKE 105
Query: 218 VTQVVENDADVQSE---EEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
V QV A VQ+ E+++ EIVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 106 VKQV----ATVQTNAPAEDNEEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNA 161
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET NIVY+RK G YG+I
Sbjct: 162 ETNRTNIVYRRKDGKYGLI 180
>gi|257867481|ref|ZP_05647134.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
casseliflavus EC30]
gi|257877560|ref|ZP_05657213.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
casseliflavus EC20]
gi|257801537|gb|EEV30467.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
casseliflavus EC30]
gi|257811726|gb|EEV40546.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
casseliflavus EC20]
Length = 180
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 109/195 (55%), Gaps = 22/195 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + ++ + V E ++++ + + EVT+
Sbjct: 1 MRGENIEVTEAIRDYVEKKVGK-LERYFNDVPEATAHVNLKV----YTEKTAKVEVTI-P 54
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
V+RAEE + +YASIDLV ++R++RK K K NR K RE V
Sbjct: 55 LPFLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRE-TALVP 102
Query: 223 ENDADVQSEEEDDNFVD----EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
D D+ + E +D + +IVR K + P+ EA+ Q+ + H+F+ F + ET
Sbjct: 103 PTDGDLFTTEANDEETNGSDLDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNG 162
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 163 TSIVYRRKDGKYGLI 177
>gi|304407679|ref|ZP_07389330.1| ribosomal subunit interface protein [Paenibacillus curdlanolyticus
YK9]
gi|304343162|gb|EFM09005.1| ribosomal subunit interface protein [Paenibacillus curdlanolyticus
YK9]
Length = 181
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 109/197 (55%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL--VREVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+++++T+ ++ +VE+K + + K+ E +V LSV G
Sbjct: 1 MKYNIRGQHIQVTEALREYVEKKTSR-LEKYFEAPETSETNVTLSVTKGYHA-------V 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EV++ ++RAE +E +YASID V ++R++RK K + + R+ G
Sbjct: 53 EVSI-PLTGAMLRAEVKSEDMYASIDAVVDKLERQIRKHKTRVNRKIRNESGIR------ 105
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
T E+ + V+ +E+++F E+VR K F P+ V EAI Q+ V H+F+ F N +T
Sbjct: 106 --TFFKESGSTVRVLDEEEDF--EVVRTKQFTFKPMDVEEAILQMNMVGHNFFVFANSDT 161
Query: 277 GEINIVYKRKAGGYGVI 293
E+N+VYKR G YG+I
Sbjct: 162 KEVNVVYKRSDGKYGLI 178
>gi|358468154|ref|ZP_09177782.1| ribosomal subunit interface protein [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357065469|gb|EHI75674.1| ribosomal subunit interface protein [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 181
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 30/202 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD +K + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIKKYAEEKISK-VEKFNDSIIKIDANLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ +L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATETDLYASIDKAVDIMENQLKKHKEKRS----------RAKVQDDT 105
Query: 219 TQ-------VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
+ +VE + V E++ +VR+ + + P+ +SEAI QLE ++ F+ F
Sbjct: 106 RKKSYSFDYIVEPEEKVSDEKK-------LVRV-YLPLKPMEISEAILQLEYLNRVFFAF 157
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
N ETG++ +VYKRK G YGVI
Sbjct: 158 TNSETGKMAVVYKRKDGDYGVI 179
>gi|295697364|ref|YP_003590602.1| ribosomal subunit interface protein [Kyrpidia tusciae DSM 2912]
gi|295412966|gb|ADG07458.1| ribosomal subunit interface protein [Kyrpidia tusciae DSM 2912]
Length = 180
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 110/199 (55%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGPRIRRC 156
+++ ++G NL +T+ ++ + KVG+ + K+ + ++V V LSV+ G + +
Sbjct: 1 MRIHVRGDNLAVTEALREYAVRKVGR-LEKYFDAPADQDVYVTLSVKRG-------LHKV 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ T V RAEE++ +Y S+DLV + + + E + K F + +R
Sbjct: 53 EVTM-TLGGIVFRAEEESGDMYGSLDLVVD------KLVSQAERHKSKINKRFRQAGIR- 104
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+T VE + Q E E+VR+K F + P+ V EAI Q++ + HDF+ F N +T
Sbjct: 105 TLTAEVEPAKEGQRE-----IAGEVVRVKRFPVKPMPVEEAILQMDLLGHDFFVFANADT 159
Query: 277 GEINIVYKRKAGGYGVIIP 295
E+N+VY+RK G YG+I P
Sbjct: 160 DEVNVVYRRKDGNYGLIEP 178
>gi|220927826|ref|YP_002504735.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Clostridium cellulolyticum H10]
gi|219998154|gb|ACL74755.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
cellulolyticum H10]
Length = 176
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 112/203 (55%), Gaps = 33/203 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CE 157
+ +II GKN+E+T+ ++ V +KV K + K + EV V LSV+ R+ + E
Sbjct: 1 MNIIISGKNIEITEALREKVTKKV-KKLEKFFNSDTEVHVTLSVQ--------RVSQIVE 51
Query: 158 VTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
+T+ +GV +RAE+ E +Y SID V +I+R++RK K + + H F
Sbjct: 52 ITI--PFNGVTLRAEDQNEDMYTSIDRVIDLIERQIRKNKTR-LERRLHDHDFK------ 102
Query: 217 PVTQVVENDA---DVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
V+N DVQ E E ++VR K F + P+ V EAI Q+ + H+F+ F N
Sbjct: 103 -----VDNSKFTYDVQEETEF-----KVVRSKRFAVKPMDVEEAILQMNLLGHEFFMFYN 152
Query: 274 EETGEINIVYKRKAGGYGVIIPK 296
++ ++N+VYKRK G YG+I P+
Sbjct: 153 ADSRQVNVVYKRKDGNYGLIEPE 175
>gi|160946865|ref|ZP_02094068.1| hypothetical protein PEPMIC_00826 [Parvimonas micra ATCC 33270]
gi|343520633|ref|ZP_08757602.1| ribosomal subunit interface protein [Parvimonas sp. oral taxon 393
str. F0440]
gi|158447249|gb|EDP24244.1| ribosomal subunit interface protein [Parvimonas micra ATCC 33270]
gi|343397591|gb|EGV10125.1| ribosomal subunit interface protein [Parvimonas sp. oral taxon 393
str. F0440]
Length = 174
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 105/197 (53%), Gaps = 24/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL GKN+E+T+ +K +K K ++++ +++ K +I E
Sbjct: 1 MKLQFIGKNIEVTNALKEITAKKFEKL---DKFFSKDIEGKVTYSAV---KNDKI--FEA 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ ++RAEE +Y SID+V ++R++RK K K + ++ K+ EP+
Sbjct: 53 TIYLPNSTILRAEESTNDMYTSIDIVLDNLERQIRKNKTKLQKKYQALETIRFEKIAEPL 112
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
EEE+ +IVR+K F++ ++ EAI Q+E ++HDF+ F+N + +
Sbjct: 113 ------------EEEES----KIVRVKKFDVATMSEEEAILQIELLNHDFFIFKNAKDYK 156
Query: 279 INIVYKRKAGGYGVIIP 295
N++YKRK G YG+II
Sbjct: 157 TNVLYKRKDGNYGLIIA 173
>gi|405980057|ref|ZP_11038398.1| ribosomal subunit interface protein [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391432|gb|EJZ86496.1| ribosomal subunit interface protein [Actinomyces turicensis
ACS-279-V-Col4]
Length = 215
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 26/214 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K L + R VDV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITLFYPRAQR-VDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH----MKGFN 210
R E+T++ K ++RAE ++ YA++D+ + + +LR+++++ DH R M
Sbjct: 55 RIELTVYGKG-PIIRAEAESGDRYAAVDIAAGKLFERLRRLRDRAKDHRRRYSHEMDEVE 113
Query: 211 RLKVREPVTQVVENDADVQSEEEDDNFVDE-----------IVRMKFFEMPPLTVSEAIE 259
L+ PV +E A ++ +D V E +VR K E P+TV EA+
Sbjct: 114 FLEEPAPVEDTIEEAAPLKLRSAEDLKVGEAREEQLGDTPILVRQKVHEAEPMTVDEALN 173
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
Q+E V H F+ F ++ET + +VY R YGV+
Sbjct: 174 QMEMVGHPFFLFIDKETKQPCVVYHRHGWTYGVL 207
>gi|297587624|ref|ZP_06946268.1| ribosomal subunit interface protein [Finegoldia magna ATCC 53516]
gi|297574313|gb|EFH93033.1| ribosomal subunit interface protein [Finegoldia magna ATCC 53516]
Length = 179
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 105/200 (52%), Gaps = 28/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL K+++LTD +K E K+ K + K+ H ++ V F K R EV
Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHK-LDKYFHDEQQARVV-------FKKEKDKARVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E + +ID V + R++RK ++ K+++
Sbjct: 53 TMILDKGVVLRAEESNEDIKTAIDKVEDALARQIRK---------------HKTKLQKRF 97
Query: 219 TQVVENDADVQSEEEDDNF---VDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
T+ N ++ EE+++ + IV+ K F + P+ EAI Q+E +DHDF+ F + +
Sbjct: 98 TE--SNSIRFEAVEENNDKEIPIGAIVKTKEFGIKPMDKEEAIMQMELIDHDFFVFLDSK 155
Query: 276 TGEINIVYKRKAGGYGVIIP 295
T +N+VYKRK G YG+++P
Sbjct: 156 TNNVNVVYKRKDGNYGLLVP 175
>gi|414073877|ref|YP_006999094.1| putative sigma 54 modulation protein [Lactococcus lactis subsp.
cremoris UC509.9]
gi|413973797|gb|AFW91261.1| putative sigma 54 modulation protein [Lactococcus lactis subsp.
cremoris UC509.9]
Length = 185
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+N+E+TD ++ +VE+K+GK H V V L V + K
Sbjct: 2 IKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHQVTAY-VNLKVYTEKRAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVTL K+ +RAE+ ++ +Y+SID V ++R++RK K + + R+
Sbjct: 55 EVTL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAV--------- 104
Query: 217 PVTQVVEND---ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P QV ++ D E +D+ +IVR K + P+ EA+ Q++ + HDFY F +
Sbjct: 105 PTGQVFGDEFAPLDTTDEVAEDHV--DIVRTKHVALKPMNAEEAVLQMDMLGHDFYVFTD 162
Query: 274 EETGEINIVYKRKAGGYGVI 293
++ ++VY+R G YG+I
Sbjct: 163 ADSNGTHVVYRRTDGRYGLI 182
>gi|332686411|ref|YP_004456185.1| ribosomal subunit interface protein [Melissococcus plutonius ATCC
35311]
gi|332370420|dbj|BAK21376.1| ribosomal subunit interface protein [Melissococcus plutonius ATCC
35311]
Length = 184
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 19/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T+ ++N++E+KVGK + V V L V + K EVT+
Sbjct: 8 VRGENIEVTEAIRNYIEKKVGKLERYFNDSPVATVHANLKVYTEKTAK------VEVTI- 60
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YASIDLV ++R++RK K + NR K RE
Sbjct: 61 PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTR----------INR-KSRETGIDT 109
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ + E +D +IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 110 AKASVFLNDEGTEDPTDLDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDSETNGTSI 169
Query: 282 VYKRKAGGYGVI 293
VY+RK G YG+I
Sbjct: 170 VYRRKDGKYGLI 181
>gi|423484787|ref|ZP_17461476.1| ribosomal subunit interface protein [Bacillus cereus BAG6X1-2]
gi|401137373|gb|EJQ44955.1| ribosomal subunit interface protein [Bacillus cereus BAG6X1-2]
Length = 182
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 218 ---VTQVVENDAD-VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
T + +A+ V +E + E+VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GSVKTNFILPEAEAVAVMDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTN 159
Query: 274 EETGEINIVYKRKAGGYGVI 293
+T E N+VY RK G YG+I
Sbjct: 160 ADTNETNVVYGRKDGKYGLI 179
>gi|75759029|ref|ZP_00739137.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218900308|ref|YP_002448719.1| ribosomal subunit interface protein [Bacillus cereus G9842]
gi|228903662|ref|ZP_04067782.1| Ribosome-associated factor Y [Bacillus thuringiensis IBL 4222]
gi|228911022|ref|ZP_04074830.1| Ribosome-associated factor Y [Bacillus thuringiensis IBL 200]
gi|228968290|ref|ZP_04129288.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402563212|ref|YP_006605936.1| ribosomal subunit interface protein [Bacillus thuringiensis HD-771]
gi|423362974|ref|ZP_17340474.1| ribosomal subunit interface protein [Bacillus cereus VD022]
gi|434378305|ref|YP_006612949.1| ribosomal subunit interface protein [Bacillus thuringiensis HD-789]
gi|74493495|gb|EAO56603.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218543998|gb|ACK96392.1| ribosomal subunit interface protein [Bacillus cereus G9842]
gi|228791463|gb|EEM39067.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228848677|gb|EEM93523.1| Ribosome-associated factor Y [Bacillus thuringiensis IBL 200]
gi|228855930|gb|EEN00470.1| Ribosome-associated factor Y [Bacillus thuringiensis IBL 4222]
gi|401076725|gb|EJP85076.1| ribosomal subunit interface protein [Bacillus cereus VD022]
gi|401791864|gb|AFQ17903.1| ribosomal subunit interface protein [Bacillus thuringiensis HD-771]
gi|401876862|gb|AFQ29029.1| ribosomal subunit interface protein [Bacillus thuringiensis HD-789]
Length = 180
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 107/196 (54%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSMKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V ++ + E VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 110 EAVAVMDEVEEDELEL--------VRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|257870237|ref|ZP_05649890.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
gallinarum EG2]
gi|357050503|ref|ZP_09111701.1| hypothetical protein HMPREF9478_01684 [Enterococcus saccharolyticus
30_1]
gi|257804401|gb|EEV33223.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
gallinarum EG2]
gi|355381156|gb|EHG28283.1| hypothetical protein HMPREF9478_01684 [Enterococcus saccharolyticus
30_1]
Length = 185
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 110/195 (56%), Gaps = 22/195 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + ++ + V E ++++ + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGK-LERYFNDVPEATAHVNLKV----YTEKTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
V+RAEE + +YASIDLV ++R++RK K K NR K RE V
Sbjct: 60 LPFLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETAL-VA 107
Query: 223 ENDADV----QSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
++ D+ +EEE + +IVR K + P+ EA+ Q+ + H+F+ F + ET
Sbjct: 108 PDNGDLFTTDTNEEETNGAELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNG 167
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 168 TSIVYRRKDGKYGLI 182
>gi|116511438|ref|YP_808654.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Lactococcus lactis subsp. cremoris SK11]
gi|116107092|gb|ABJ72232.1| SSU ribosomal protein S30P [Lactococcus lactis subsp. cremoris
SK11]
Length = 185
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 106/200 (53%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK--AVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+N+E+TD ++++VE+K+GK H V V L V + K
Sbjct: 2 IKFNIRGENVEVTDAIRDYVEDKIGKLDKYFNDGHEVTAY-VNLKVYTEKRAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVTL K+ +RAE+ ++ +Y+SID V ++R++RK K + + R+
Sbjct: 55 EVTL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAV--------- 104
Query: 217 PVTQVVEND---ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
P QV ++ D E +D+ +IVR K + P+ EA+ Q++ + HDFY F +
Sbjct: 105 PTGQVFGDEFAPLDTTDEVAEDHV--DIVRTKHVALKPMDAEEAVLQMDMLGHDFYVFTD 162
Query: 274 EETGEINIVYKRKAGGYGVI 293
++ ++VY+R G YG+I
Sbjct: 163 ADSNGTHVVYRRTDGRYGLI 182
>gi|402299800|ref|ZP_10819373.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
alcalophilus ATCC 27647]
gi|401725046|gb|EJS98360.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
alcalophilus ATCC 27647]
Length = 184
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 21/198 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T ++ +VE+KVGK V +V+V++ V + E+T+
Sbjct: 5 IRGENIEVTPALREYVEKKVGKLERYFDTTPVADVNVKMQVLNNQ-------HIIEITI- 56
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL--KVREPVT 219
++R EE +YA+ID+V ++R++RK K K + R + EP+
Sbjct: 57 PLPQLLLRGEEVHTDMYAAIDVVIEKLERQIRKHKTKVNRKFRQEGSLKYMFKNELEPLE 116
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
Q V D D E+VR K F + P+ EAI Q++ + H F+ F N E G+
Sbjct: 117 QEVIVDEDEL----------EVVRTKRFNLKPMDAEEAILQMDLLGHSFFVFSNSENGDT 166
Query: 280 NIVYKRKAGGYGVIIPKG 297
N+VYKRK G YG+I P+
Sbjct: 167 NVVYKRKDGRYGLIEPEA 184
>gi|423613303|ref|ZP_17589163.1| ribosomal subunit interface protein [Bacillus cereus VD107]
gi|401242465|gb|EJR48840.1| ribosomal subunit interface protein [Bacillus cereus VD107]
Length = 180
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 28/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 218 VTQVVEND----ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ V+N+ V +E + E+VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GS--VKNNFILPEAVAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTN 157
Query: 274 EETGEINIVYKRKAGGYGVI 293
+T E N+VY RK G YG+I
Sbjct: 158 ADTNETNVVYGRKDGKYGLI 177
>gi|325571394|ref|ZP_08146894.1| ribosomal subunit interface protein [Enterococcus casseliflavus
ATCC 12755]
gi|420262010|ref|ZP_14764653.1| ribosomal subunit interface protein [Enterococcus sp. C1]
gi|325155870|gb|EGC68066.1| ribosomal subunit interface protein [Enterococcus casseliflavus
ATCC 12755]
gi|394771032|gb|EJF50816.1| ribosomal subunit interface protein [Enterococcus sp. C1]
Length = 185
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 110/195 (56%), Gaps = 22/195 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + ++ + V E ++++ + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGK-LERYFNDVPEATAHVNLKV----YTEKTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
V+RAEE + +YASIDLV ++R++RK K K NR K RE V
Sbjct: 60 LPFLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRE-TALVP 107
Query: 223 ENDADV----QSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
D D+ ++EE++ +IVR K + P+ EA+ Q+ + H+F+ F + ET
Sbjct: 108 PTDGDLFTTEANDEENNGSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNG 167
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 168 TSIVYRRKDGKYGLI 182
>gi|253701983|ref|YP_003023172.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacter sp.
M21]
gi|251776833|gb|ACT19414.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacter sp.
M21]
Length = 182
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
+++E +D +K++ EEK+ + V K+ V V L+V +IR T K
Sbjct: 8 RHMEPSDALKSYAEEKLER-VKKYIDEPIVVQVFLTVE--------KIRHMAEVTITAKG 58
Query: 166 GVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEND 225
++A E+ +YASID VS I+R+LR+ KE+ H R QV ++
Sbjct: 59 ITIKAAEETNDMYASIDAVSDKIERQLRRFKERIKAHKPAPDARER--------QVQKSI 110
Query: 226 ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKR 285
+ QS EE I++ K F M P++V EA+ Q+E + DF + T +IN+VY+R
Sbjct: 111 VEAQSIEEGAQ-APVIIKTKSFSMKPMSVEEAVMQMELLHKDFLVYTESSTEKINVVYRR 169
Query: 286 KAGGYGVIIPKG 297
K G YG+I P+
Sbjct: 170 KDGNYGLISPEN 181
>gi|256848107|ref|ZP_05553551.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Lactobacillus coleohominis 101-4-CHN]
gi|256715167|gb|EEU30144.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Lactobacillus coleohominis 101-4-CHN]
Length = 179
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 106/195 (54%), Gaps = 20/195 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N++LTD ++++VE+++ K + L VD V + + + EV
Sbjct: 2 LKFNIRGENVDLTDAIRDYVEKRISKI---NKFLEDNVDATAHVNLKVYKN--KTFKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + +RAEE + +YASIDLV+ ++R++RK K K + R KG L
Sbjct: 57 TI-PLPYLTLRAEETSNDMYASIDLVTDKLERQIRKYKTKVNRKSRE-KGLKNL------ 108
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ V D EDD+ +IVR K + P+ EA+ Q++ + HDF+ F++ +T
Sbjct: 109 -EFVPGD----DGTEDDSL--KIVRTKEISLKPMDSEEAVLQMDMLGHDFFIFQDADTNG 161
Query: 279 INIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 162 TSVVYRRNDGRYGLI 176
>gi|42784341|ref|NP_981588.1| ribosomal subunit interface protein [Bacillus cereus ATCC 10987]
gi|49481144|ref|YP_039178.1| ribosomal subunit interface protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|206976850|ref|ZP_03237753.1| ribosomal subunit interface protein [Bacillus cereus H3081.97]
gi|228936475|ref|ZP_04099273.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229199305|ref|ZP_04325972.1| Ribosome-associated factor Y [Bacillus cereus m1293]
gi|402554727|ref|YP_006595998.1| ribosomal subunit interface protein [Bacillus cereus FRI-35]
gi|423355666|ref|ZP_17333290.1| ribosomal subunit interface protein [Bacillus cereus IS075]
gi|423573163|ref|ZP_17549282.1| ribosomal subunit interface protein [Bacillus cereus MSX-D12]
gi|423608475|ref|ZP_17584367.1| ribosomal subunit interface protein [Bacillus cereus VD102]
gi|42740272|gb|AAS44196.1| ribosomal subunit interface protein [Bacillus cereus ATCC 10987]
gi|49332700|gb|AAT63346.1| ribosomal subunit interface protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|206744985|gb|EDZ56389.1| ribosomal subunit interface protein [Bacillus cereus H3081.97]
gi|228584165|gb|EEK42316.1| Ribosome-associated factor Y [Bacillus cereus m1293]
gi|228823307|gb|EEM69141.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|401082018|gb|EJP90289.1| ribosomal subunit interface protein [Bacillus cereus IS075]
gi|401215561|gb|EJR22277.1| ribosomal subunit interface protein [Bacillus cereus MSX-D12]
gi|401238484|gb|EJR44925.1| ribosomal subunit interface protein [Bacillus cereus VD102]
gi|401795937|gb|AFQ09796.1| ribosomal subunit interface protein [Bacillus cereus FRI-35]
Length = 180
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRK----------HKTKVNR-KLREK 99
Query: 218 ---VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
T + +A V +E + E+VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GSMKTNFILPEA-VAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNA 158
Query: 275 ETGEINIVYKRKAGGYGVI 293
+T E N+VY RK G YG+I
Sbjct: 159 DTNETNVVYGRKDGKYGLI 177
>gi|329769497|ref|ZP_08260907.1| hypothetical protein HMPREF0433_00671 [Gemella sanguinis M325]
gi|328838712|gb|EGF88310.1| hypothetical protein HMPREF0433_00671 [Gemella sanguinis M325]
Length = 181
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 113/196 (57%), Gaps = 29/196 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+NLE+T ++ +VE KV K + K+ E +V + + + K ++ E+T+
Sbjct: 6 VRGENLEITQPIREYVENKVSK-LEKYFADSLEANVYANAKVYKNNK----KKIEITVPL 60
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K GV +RAEE E +YA++DL ++R++RK K K + GR KGF
Sbjct: 61 K--GVTLRAEETNEDLYAAVDLAVDKLERQMRKHKTKINRKGRE-KGFV----------- 106
Query: 222 VENDADVQSEEEDDNFVDE----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
N+ + SE ED V+E + ++K ++ +T EA+ Q+E + HDF+ F +++TG
Sbjct: 107 --NENLLTSELED---VEEPSVNLGKVKQLKVEVMTREEAVFQMELLGHDFFAFLDDKTG 161
Query: 278 EINIVYKRKAGGYGVI 293
E++IVYKR+ GYGV+
Sbjct: 162 EVSIVYKRRDTGYGVL 177
>gi|126652455|ref|ZP_01724627.1| ribosomal subunit interface protein [Bacillus sp. B14905]
gi|126590726|gb|EAZ84841.1| ribosomal subunit interface protein [Bacillus sp. B14905]
Length = 183
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 103/191 (53%), Gaps = 16/191 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE K+ K + +V+ +V + + + EVT+
Sbjct: 6 IRGENIEVTPAIREYVENKIEKV---ERYFNEDVNANANVNLKVYN--DKQTKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE +YA++DL+ ++R++RK K K + R +G + TQ V
Sbjct: 60 MKNLTLRAEERHNDMYAAVDLIVDKLERQIRKHKTKVNRKFREREG---AGLYFATTQAV 116
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
D +EE+ + IVR K F++ P+ EA+ Q+ + HDFY F + E+ NIV
Sbjct: 117 ---VDTTLDEEEYS----IVRTKQFDLKPMDQEEAVLQMNMLGHDFYVFTDAESNGTNIV 169
Query: 283 YKRKAGGYGVI 293
YKRK G YG+I
Sbjct: 170 YKRKDGKYGLI 180
>gi|116873875|ref|YP_850656.1| ribosomal subunit interface protein [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|217963387|ref|YP_002349065.1| ribosomal subunit interface protein [Listeria monocytogenes HCC23]
gi|290892675|ref|ZP_06555667.1| yfiA protein [Listeria monocytogenes FSL J2-071]
gi|315283650|ref|ZP_07871779.1| ribosome-associated factor Y [Listeria marthii FSL S4-120]
gi|386009228|ref|YP_005927506.1| ribosomal subunit interface protein [Listeria monocytogenes L99]
gi|386027840|ref|YP_005948616.1| putative ribosome-associated inhibitor (protein Y) [Listeria
monocytogenes M7]
gi|404408888|ref|YP_006691603.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2376]
gi|422410788|ref|ZP_16487749.1| ribosome-associated factor Y [Listeria monocytogenes FSL F2-208]
gi|422810541|ref|ZP_16858952.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
J1-208]
gi|116742753|emb|CAK21877.1| ribosomal subunit interface protein [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|217332657|gb|ACK38451.1| ribosomal subunit interface protein [Listeria monocytogenes HCC23]
gi|290557735|gb|EFD91257.1| yfiA protein [Listeria monocytogenes FSL J2-071]
gi|307572038|emb|CAR85217.1| ribosomal subunit interface protein [Listeria monocytogenes L99]
gi|313606797|gb|EFR83473.1| ribosome-associated factor Y [Listeria monocytogenes FSL F2-208]
gi|313612702|gb|EFR86715.1| ribosome-associated factor Y [Listeria marthii FSL S4-120]
gi|336024421|gb|AEH93558.1| putative ribosome-associated inhibitor (protein Y) [Listeria
monocytogenes M7]
gi|378751431|gb|EHY62021.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
J1-208]
gi|404243037|emb|CBY64437.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2376]
Length = 187
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 103/195 (52%), Gaps = 12/195 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE+K+ K + D + V + + + EV
Sbjct: 2 LKYNIRGENIEVTEPIRDYVEKKIDKL---ERYFTETPDANVHVNLKVYSD--KNAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +YASIDL+ ++R++RK K K + R KG R
Sbjct: 57 TI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-KGAER-----DY 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ + EE + +F EIVR K F + P+ EA+ Q+ + H FY + + ET
Sbjct: 110 FAYSDVNGSTPPEENESDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNG 169
Query: 279 INIVYKRKAGGYGVI 293
NIVY RK G YG+I
Sbjct: 170 TNIVYSRKDGKYGLI 184
>gi|260584687|ref|ZP_05852433.1| ribosomal subunit interface protein [Granulicatella elegans ATCC
700633]
gi|260157710|gb|EEW92780.1| ribosomal subunit interface protein [Granulicatella elegans ATCC
700633]
Length = 182
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 107/191 (56%), Gaps = 18/191 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T+ ++N+ E+K+ K + K+ V V ++++ + + EVT+
Sbjct: 6 IRGENIEVTEAIRNYAEKKLSK-LEKYFGDVANATVHVNLKV----YTEKTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +Y SIDLV ++R++RK K K + R KGF+ +
Sbjct: 60 LPYLVLRAEETSGDLYGSIDLVIDKLERQVRKYKTKINRKSRE-KGFD-----------I 107
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
V ++D V EIVR K ++ P+ EA+ Q+ + H+F+ +++ ET E +IV
Sbjct: 108 PVAPVVPEPVDEDESVLEIVRTKRVDLKPMDSEEAVLQMNMLGHNFFIYQDAETNETHIV 167
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 168 YRRKDGKYGLI 178
>gi|259502721|ref|ZP_05745623.1| ribosomal subunit interface protein [Lactobacillus antri DSM 16041]
gi|259169366|gb|EEW53861.1| ribosomal subunit interface protein [Lactobacillus antri DSM 16041]
Length = 179
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 107/202 (52%), Gaps = 34/202 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+E+TD ++++V +++ K +V +H V L V
Sbjct: 2 LKFNIRGENVEVTDAIRDYVVKRISKLQKFFEDSVEATAH------VNLKVYPN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y S+DLV+ ++R++RK K K + R KG
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
L + V +D D S+E +IVR K + P+ EA+ Q++ + HDF+ F
Sbjct: 108 L-------EFVPSDDDAASDEL------KIVRTKQVSLKPMDPEEAVLQMDMLGHDFFVF 154
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
++ ET +IVY+R+ G YG+I
Sbjct: 155 QDAETNGTSIVYRRRDGRYGLI 176
>gi|313893723|ref|ZP_07827290.1| ribosomal subunit interface protein [Veillonella sp. oral taxon 158
str. F0412]
gi|313441737|gb|EFR60162.1| ribosomal subunit interface protein [Veillonella sp. oral taxon 158
str. F0412]
Length = 175
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+E+TD ++ ++E+++ K L R D L + E+
Sbjct: 1 MKVAIRGKNIEVTDALRAYIEKRLSK-------LTRYFDDELDAQAV-LSVVKDKSTIEL 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F K V+R E + +YA+IDLV I R++ K K + + + + F+ + PV
Sbjct: 53 TCFVDK-IVLRGVETNDDMYAAIDLVIDKIVRQIHKHKTRLAKRFKKQEAFHPEVLAAPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
EEE E+V+ K F + P+ V EAI Q+ + HDF+ F N ET
Sbjct: 112 ------------EEE----TIEVVKRKHFAVRPMDVEEAILQMNLIGHDFFMFFNAETEA 155
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VY+R G YG+I P+
Sbjct: 156 MNVVYRRHDGFYGLIEPE 173
>gi|297206287|ref|ZP_06923682.1| ribosomal subunit interface protein [Lactobacillus jensenii JV-V16]
gi|297149413|gb|EFH29711.1| ribosomal subunit interface protein [Lactobacillus jensenii JV-V16]
Length = 181
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 108/197 (54%), Gaps = 23/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L +V V L V K
Sbjct: 2 LKYNVRGENIEVTEALRSYVEKRLEK-LEKYFELTSDVIAHVNLKVYKNHDAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE ++ +Y SID VS ++R++RK K + + GR KG +
Sbjct: 55 EVTI-PLPYLVLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGRE-KGVKDFFIET 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
P +EEE +IVR K + P+ EAI Q++ ++HDF+ F++ ET
Sbjct: 113 P------------AEEEKPTSEFDIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAET 160
Query: 277 GEINIVYKRKAGGYGVI 293
+IVY+R G YG+I
Sbjct: 161 NGTSIVYRRNDGRYGLI 177
>gi|256851472|ref|ZP_05556861.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Lactobacillus jensenii 27-2-CHN]
gi|260660893|ref|ZP_05861808.1| ribosome-associated protein Y [Lactobacillus jensenii 115-3-CHN]
gi|256616534|gb|EEU21722.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Lactobacillus jensenii 27-2-CHN]
gi|260548615|gb|EEX24590.1| ribosome-associated protein Y [Lactobacillus jensenii 115-3-CHN]
Length = 187
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 108/197 (54%), Gaps = 23/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L +V V L V K
Sbjct: 8 LKYNVRGENIEVTEALRSYVEKRLEK-LEKYFELTSDVIAHVNLKVYKNHDAK------V 60
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE ++ +Y SID VS ++R++RK K + + GR KG +
Sbjct: 61 EVTI-PLPYLVLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGRE-KGVKDFFIET 118
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
P +EEE +IVR K + P+ EAI Q++ ++HDF+ F++ ET
Sbjct: 119 P------------AEEEKPTSEFDIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAET 166
Query: 277 GEINIVYKRKAGGYGVI 293
+IVY+R G YG+I
Sbjct: 167 NGTSIVYRRNDGRYGLI 183
>gi|420146099|ref|ZP_14653537.1| 30S ribosomal interface protein S30EA [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398402223|gb|EJN55592.1| 30S ribosomal interface protein S30EA [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 185
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 107/192 (55%), Gaps = 18/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T ++++VE+++GK ++ V L V + K EVT+
Sbjct: 6 VRGENIEVTAAIRSYVEKRLGKLEKYFTNTAESTAHVNLKVYPDKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ +RAEE + +YAS+DLV+ ++R++RK K K + R KG +R+ V
Sbjct: 59 PLPYLTLRAEETSPDLYASVDLVTDKLERQIRKFKTKINRKSRE-KG-----IRDFDLTV 112
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ DA+ S+EE + +VR K + P+ EAI Q++ + H+F+ F + ET +I
Sbjct: 113 LAADANDDSKEEKLD----VVRTKRVNLKPMDSEEAILQMDMLGHNFFIFEDAETNGTSI 168
Query: 282 VYKRKAGGYGVI 293
VYKR+ G YG+I
Sbjct: 169 VYKRRDGRYGLI 180
>gi|407472787|ref|YP_006787187.1| ribosomal subunit interface protein [Clostridium acidurici 9a]
gi|407049295|gb|AFS77340.1| ribosomal subunit interface protein [Clostridium acidurici 9a]
Length = 176
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I GK +E+TD +K ++EK + + K+ H V+V LSV+ KG +I E
Sbjct: 1 MKLTISGKQMEVTDALKVVIDEKFER-LDKYFHKEIPVNVTLSVQ-----KGRQI--VEA 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ F+ ++RAEE +YASID V +++R++RK K K R K ++
Sbjct: 53 TIPFS--GAMLRAEEATPDMYASIDKVIDVLERQVRKHKTKLQ---RRTKAGETIRFEN- 106
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
QV+ + D +S+ IV+ K F + P+ EAI Q+E + H+F+ + + +T
Sbjct: 107 -IQVLPYNEDEESK---------IVKTKKFTIKPMDEEEAILQMELLRHNFFVYIDGQTD 156
Query: 278 EINIVYKRKAGGYGVIIPK 296
E+ +VYKRK G YG+I P+
Sbjct: 157 EVKVVYKRKDGNYGLIEPQ 175
>gi|212640385|ref|YP_002316905.1| ribosome-associated protein [Anoxybacillus flavithermus WK1]
gi|212561865|gb|ACJ34920.1| Ribosome-associated protein Y (PSrp-1) [Anoxybacillus flavithermus
WK1]
Length = 182
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 105/199 (52%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE---VDVRLSVRGGEFGKGPRIRR 155
+K I+G+N+E+T ++ +VE+K+GK L+ E V V L V + K
Sbjct: 1 MKYNIRGENIEVTQAIREYVEKKIGK--LERYFESTEGVTVHVNLKVYNDKQAK------ 52
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ V+RAEE + +YA+IDLV ++R++RK H NR K+R
Sbjct: 53 IEVTI-PMPQIVLRAEERHDDMYAAIDLVVDKLERQIRK----------HKTKVNR-KMR 100
Query: 216 EPVTQVVENDADV-QSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
E V A V + EE + E+VR K F + P+ EAI Q+ + H+FY F N
Sbjct: 101 EKEANGVTLTATVPVATEEHEEEEFEVVRTKRFSLKPMDSEEAILQMNMLGHNFYVFINA 160
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET N+VYKRK G YG+I
Sbjct: 161 ETNRTNVVYKRKDGKYGLI 179
>gi|197117262|ref|YP_002137689.1| ribosomal subunit interface-associated sigma-54 modulation protein
[Geobacter bemidjiensis Bem]
gi|197086622|gb|ACH37893.1| ribosomal subunit interface-associated sigma-54 modulation protein
RaiA [Geobacter bemidjiensis Bem]
Length = 182
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 18/191 (9%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
+++E +D +K++ EEK+ + V K+ V V L+V +IR T K
Sbjct: 8 RHMEPSDALKSYAEEKLER-VKKYIDEPIVVQVFLTVE--------KIRHMAEVTITAKG 58
Query: 166 GVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEND 225
++A E+ +YASID VS I+R+LR+ KE+ H R QV ++
Sbjct: 59 ITIKAAEETNDMYASIDAVSDKIERQLRRFKERIKAHKPAPDARER--------QVQKSI 110
Query: 226 ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKR 285
+ QS EE I++ K F M P++V EA+ Q+E + DF + T +IN+VY+R
Sbjct: 111 VEAQSIEEGAQ-APVIIKTKSFSMKPMSVEEAVMQMELLHKDFLVYTESSTEKINVVYRR 169
Query: 286 KAGGYGVIIPK 296
K G YG+I P+
Sbjct: 170 KDGNYGLISPE 180
>gi|415883548|ref|ZP_11545577.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
methanolicus MGA3]
gi|387591343|gb|EIJ83660.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
methanolicus MGA3]
Length = 184
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 109/191 (57%), Gaps = 14/191 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE+K+ K + ++ +V+V +++R + + EVT+
Sbjct: 5 IRGENIEVTPAIREYVEKKISK-LERYFAETPKVNVHVNLRTY----SDKSAKVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE E +YA+IDL++ ++R++RK K K + R N L T V
Sbjct: 59 MPNIVLRAEEVHEDMYAAIDLIADKLERQIRKHKTKVNRKLREKGSVNSL----FATMVE 114
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
E +A EE + EIVR K F++ P+ EAI Q+ + H+F+ F N ET NIV
Sbjct: 115 EPEAPAAEEENEL----EIVRQKSFDLKPMDSEEAILQMNLLGHNFFVFTNAETNRTNIV 170
Query: 283 YKRKAGGYGVI 293
YKRK G YG+I
Sbjct: 171 YKRKDGRYGLI 181
>gi|227486946|ref|ZP_03917262.1| ribosome-associated inhibitor protein Y [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227093020|gb|EEI28332.1| ribosome-associated inhibitor protein Y [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 225
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 30/229 (13%)
Query: 83 TKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSV 142
TKP D ++++I G+N+E+ + K V K+ K + +D L+
Sbjct: 2 TKPENNETQRDELRPDIQVVITGRNVEVPEHFKERVNTKLAK--------ISVLDPTLNY 53
Query: 143 RGGEFGKGPRIRRC------EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK 196
E P RR ++T K H + RAE ++ YA++++ + ++R LRK+K
Sbjct: 54 FHVELKHEPNPRRADRADKIQITATGKGH-IARAEAKEDSFYAALEVALAKMERSLRKVK 112
Query: 197 EKES-DHGRHMKGFNRLKVREPVTQVVENDADVQSEEE-----------DDNFVDEIVRM 244
+ S H H L + ++V+ + +S++E DD +IVR
Sbjct: 113 VRRSISHQGHRAP---LGAGQQAAKLVQEAEEARSKQEQYDTDPYEGLVDDVLPGQIVRR 169
Query: 245 KFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
K P++V +A+ ++E V HDFY F NEETG ++VY+R+A YG+I
Sbjct: 170 KEHPAKPMSVDDALSEMELVGHDFYLFINEETGRPSVVYRRRAFDYGLI 218
>gi|58336994|ref|YP_193579.1| phosphate starvation inducible protein stressrelated [Lactobacillus
acidophilus NCFM]
gi|58254311|gb|AAV42548.1| putative phosphate starvation inducible protein stressrelated
[Lactobacillus acidophilus NCFM]
Length = 180
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 109/195 (55%), Gaps = 20/195 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V +P
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVEQP- 113
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ E++ F +IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 114 ----------EEEKKPSEF--DIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETNG 161
Query: 279 INIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 162 TSVVYRRNDGRYGLI 176
>gi|227541892|ref|ZP_03971941.1| ribosome-associated inhibitor protein Y [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227182335|gb|EEI63307.1| ribosome-associated inhibitor protein Y [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 225
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 30/229 (13%)
Query: 83 TKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSV 142
TKP D ++++I G+N+E+ + K V K+ K + +D L+
Sbjct: 2 TKPENNETQRDELRPDIQVVITGRNVEVPEHFKERVNTKLAKISV--------LDPTLNY 53
Query: 143 RGGEFGKGPRIRRC------EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK 196
E P RR ++T K H + RAE ++ YA++++ + ++R LRK+K
Sbjct: 54 FHVELKHEPNPRRADRADKIQITATGKGH-IARAEAKEDSFYAALEVALAKMERSLRKVK 112
Query: 197 EKES-DHGRHMKGFNRLKVREPVTQVVENDADVQSEEE-----------DDNFVDEIVRM 244
+ S H H L + ++V+ + +S++E DD +IVR
Sbjct: 113 VRRSISHQGHRAP---LGAGQQAAKLVQEAEEARSKQEQYDTDPYEGLVDDVLPGQIVRR 169
Query: 245 KFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
K P++V +A+ ++E V HDFY F NEETG ++VY+R+A YG+I
Sbjct: 170 KEHPAKPMSVDDALSEMELVGHDFYLFINEETGRPSVVYRRRAFDYGLI 218
>gi|379727564|ref|YP_005319749.1| ribosomal subunit interface protein [Melissococcus plutonius
DAT561]
gi|376318467|dbj|BAL62254.1| ribosomal subunit interface protein [Melissococcus plutonius
DAT561]
Length = 182
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 19/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T+ ++N++E+KVGK + V V L V + K EVT+
Sbjct: 6 VRGENIEVTEAIRNYIEKKVGKLERYFNDSPVATVHANLKVYTEKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YASIDLV ++R++RK K + + R G + K V
Sbjct: 59 PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTRINRKSRET-GIDTAK-----AAV 112
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
ND + + D IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 113 FLNDEGTEDPTDLD-----IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDSETNGTSI 167
Query: 282 VYKRKAGGYGVI 293
VY+RK G YG+I
Sbjct: 168 VYRRKDGKYGLI 179
>gi|403236258|ref|ZP_10914844.1| Ribosome-associated factor Y [Bacillus sp. 10403023]
Length = 185
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 17/195 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRCEVTL 160
++G+N+E+T ++ +VE+K+GK L R D +V + + EVT+
Sbjct: 5 VRGENIEVTPALREYVEKKLGK-------LERYFDNTPDANVNVNLKVNNAKDHKIEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
++RAEE E +YA+ID+V+ ++R++RK K K + R KG +
Sbjct: 58 -PMPQLLLRAEESHEDMYAAIDIVTDKLERQIRKHKTKVNRKLRE-KGSTKTMFGNGGAA 115
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
D+ ED+++ E+VR K F++ P+ EAI Q+ + H+F+ F N ET N
Sbjct: 116 TATAVQDI----EDEDY--ELVRTKRFDLKPMDSEEAILQMNMLGHNFFVFTNAETNTTN 169
Query: 281 IVYKRKAGGYGVIIP 295
+VY+RK G YG+I P
Sbjct: 170 VVYRRKDGKYGIIEP 184
>gi|255283238|ref|ZP_05347793.1| ribosomal subunit interface protein [Bryantella formatexigens DSM
14469]
gi|255266311|gb|EET59516.1| ribosomal subunit interface protein [Marvinbryantia formatexigens
DSM 14469]
Length = 176
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 109/198 (55%), Gaps = 23/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I GKN+E+T+ ++ V +K+GK + ++ E+ V +SV ++ EV
Sbjct: 1 MRFTISGKNIEITEGLRTTVMDKLGK-LERYFTPDTEIIVTMSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV +I+R+LRK K K +H +G N RE +
Sbjct: 53 TIPVKGN-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKLI--AKHQEGSNFR--REFI 107
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ + + + I+R K F + P+ +A Q+E + H+F+ F N ET E
Sbjct: 108 EKEETVEPEEVN----------IIRTKHFGIKPMYPEDACIQMELLGHNFFVFCNAETEE 157
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VYKRK YG+I P+
Sbjct: 158 VNVVYKRKGNTYGLIEPE 175
>gi|389574970|ref|ZP_10165021.1| ribosome-associated inhibitor A [Bacillus sp. M 2-6]
gi|388425394|gb|EIL83228.1| ribosome-associated inhibitor A [Bacillus sp. M 2-6]
Length = 187
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 104/202 (51%), Gaps = 26/202 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T +++HVE+K+GK + +VD ++V + + EVT+
Sbjct: 5 VRGENIEVTPALRDHVEKKIGKL---ERYFESDVDASVNVNLKFYNDQES--KVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK------ESDHGRHM-KGFNRLKVR 215
+RAE E +Y ++DL +S ++R++RK K K E +H+ G N
Sbjct: 59 MTDLALRAEVHNEDMYNAVDLATSKLERQIRKHKTKVNRKFREQGAKKHLFAGGN----- 113
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
++V VQ +EE D EIVR K F + P+ EAI Q+ + H F+ F N E
Sbjct: 114 -GASEVA-----VQDDEEIDE--TEIVRQKRFNLKPMDSEEAILQMNMLGHSFFVFTNAE 165
Query: 276 TGEINIVYKRKAGGYGVIIPKG 297
T N+VY+R G YG+I P
Sbjct: 166 TNLTNVVYRRNDGKYGLIEPNA 187
>gi|422940054|ref|ZP_16967414.1| ribosome-associated protein Y [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
gi|339890237|gb|EGQ79395.1| ribosome-associated protein Y [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 195
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 18/197 (9%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
S+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E
Sbjct: 14 SMKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTE 69
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ + ++A +YASID I++ L+K KEK S R K+++
Sbjct: 70 ILAYLS-GSTLKATATESDLYASIDKAVDIMESLLKKHKEKRS----------RAKIQDD 118
Query: 218 V-TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ D V+ EE+ N ++VR+ + + P+ +SEAI QLE ++ F+ F N ET
Sbjct: 119 TRKRSYSFDYIVEPEEKLSN-EKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNSET 176
Query: 277 GEINIVYKRKAGGYGVI 293
G + +VYKRK G YGVI
Sbjct: 177 GNMAVVYKRKDGDYGVI 193
>gi|365904808|ref|ZP_09442567.1| 30S ribosomal interface protein S30EA [Lactobacillus versmoldensis
KCTC 3814]
Length = 182
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 104/194 (53%), Gaps = 24/194 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
++G+N+E+T +++ +VE+KV K S+ + V++++ G + EVT
Sbjct: 6 VRGENIEVTPSIREYVEKKVTKMEKYFSPDSNPIAHVNLKIYPSKG--------TKVEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ + +RAEE + +YA IDLV ++R+++K K K + R G + P+
Sbjct: 58 I-PLPYITLRAEEMNDDMYAGIDLVIDKLERQIKKFKTKVNRKDRDKPGIKDI----PLD 112
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
V DA +ED++ EIVR K + P+ EA+ Q+E + H+F+ F + ET
Sbjct: 113 DVPAEDA-----KEDES---EIVRTKRLSLKPMDAEEAVLQMEMLGHEFFIFEDSETNGA 164
Query: 280 NIVYKRKAGGYGVI 293
+IVYKR G YG+I
Sbjct: 165 SIVYKRNDGKYGLI 178
>gi|16801716|ref|NP_471984.1| hypothetical protein lin2655 [Listeria innocua Clip11262]
gi|16804549|ref|NP_466034.1| hypothetical protein lmo2511 [Listeria monocytogenes EGD-e]
gi|46908683|ref|YP_015072.1| ribosomal subunit interface protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093713|ref|ZP_00231465.1| ribosomal subunit interface protein [Listeria monocytogenes str. 4b
H7858]
gi|47096104|ref|ZP_00233705.1| ribosomal subunit interface protein [Listeria monocytogenes str.
1/2a F6854]
gi|226225059|ref|YP_002759166.1| Conserved hypothetical proteins like to B. subtilis YvyD protein
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254825367|ref|ZP_05230368.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
J1-194]
gi|254828086|ref|ZP_05232773.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
N3-165]
gi|254853960|ref|ZP_05243308.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
R2-503]
gi|254913410|ref|ZP_05263422.1| ribosomal subunit interface protein [Listeria monocytogenes J2818]
gi|254932248|ref|ZP_05265607.1| ribosomal subunit interface protein [Listeria monocytogenes
HPB2262]
gi|254937791|ref|ZP_05269488.1| ribosomal subunit interface protein [Listeria monocytogenes F6900]
gi|255025544|ref|ZP_05297530.1| hypothetical protein LmonocytFSL_02963 [Listeria monocytogenes FSL
J2-003]
gi|255028457|ref|ZP_05300408.1| hypothetical protein LmonL_03211 [Listeria monocytogenes LO28]
gi|255521850|ref|ZP_05389087.1| hypothetical protein LmonocFSL_11602 [Listeria monocytogenes FSL
J1-175]
gi|284802949|ref|YP_003414814.1| hypothetical protein LM5578_2706 [Listeria monocytogenes 08-5578]
gi|284996090|ref|YP_003417858.1| hypothetical protein LM5923_2655 [Listeria monocytogenes 08-5923]
gi|289435772|ref|YP_003465644.1| ribosomal subunit interface protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|300764990|ref|ZP_07074978.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
N1-017]
gi|386044813|ref|YP_005963618.1| sigma-54 modulation protein [Listeria monocytogenes 10403S]
gi|386048177|ref|YP_005966509.1| ribosomal subunit interface protein [Listeria monocytogenes J0161]
gi|386051482|ref|YP_005969473.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
R2-561]
gi|386054700|ref|YP_005972258.1| ribosomal subunit interface protein [Listeria monocytogenes Finland
1998]
gi|386733196|ref|YP_006206692.1| ribosomal subunit interface protein [Listeria monocytogenes
07PF0776]
gi|404282069|ref|YP_006682967.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2755]
gi|404285004|ref|YP_006685901.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2372]
gi|404287882|ref|YP_006694468.1| ribosomal subunit interface protein [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|404411754|ref|YP_006697342.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC5850]
gi|404414529|ref|YP_006700116.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC7179]
gi|405750856|ref|YP_006674322.1| ribosomal subunit interface protein [Listeria monocytogenes ATCC
19117]
gi|405753719|ref|YP_006677184.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2378]
gi|405756623|ref|YP_006680087.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2540]
gi|405759561|ref|YP_006688837.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2479]
gi|406705246|ref|YP_006755600.1| ribosomal subunit interface protein [Listeria monocytogenes L312]
gi|417316293|ref|ZP_12102943.1| ribosomal subunit interface protein [Listeria monocytogenes J1816]
gi|417318499|ref|ZP_12105079.1| ribosomal subunit interface protein [Listeria monocytogenes J1-220]
gi|422414022|ref|ZP_16490981.1| ribosome-associated factor Y [Listeria innocua FSL S4-378]
gi|422416994|ref|ZP_16493951.1| ribosome-associated factor Y [Listeria innocua FSL J1-023]
gi|422420069|ref|ZP_16497024.1| ribosome-associated factor Y [Listeria seeligeri FSL N1-067]
gi|422423221|ref|ZP_16500174.1| ribosome-associated factor Y [Listeria seeligeri FSL S4-171]
gi|424824261|ref|ZP_18249274.1| Sigma 54 modulation protein [Listeria monocytogenes str. Scott A]
gi|16411999|emb|CAD00589.1| lmo2511 [Listeria monocytogenes EGD-e]
gi|16415191|emb|CAC97881.1| lin2655 [Listeria innocua Clip11262]
gi|46881955|gb|AAT05249.1| ribosomal subunit interface protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47015565|gb|EAL06497.1| ribosomal subunit interface protein [Listeria monocytogenes str.
1/2a F6854]
gi|47017907|gb|EAL08688.1| ribosomal subunit interface protein [Listeria monocytogenes str. 4b
H7858]
gi|225877521|emb|CAS06235.1| Conserved hypothetical proteins like to B. subtilis YvyD protein
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|258600470|gb|EEW13795.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
N3-165]
gi|258607350|gb|EEW19958.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
R2-503]
gi|258610394|gb|EEW23002.1| ribosomal subunit interface protein [Listeria monocytogenes F6900]
gi|284058511|gb|ADB69452.1| hypothetical protein LM5578_2706 [Listeria monocytogenes 08-5578]
gi|284061557|gb|ADB72496.1| hypothetical protein LM5923_2655 [Listeria monocytogenes 08-5923]
gi|289172016|emb|CBH28562.1| ribosomal subunit interface protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|293583805|gb|EFF95837.1| ribosomal subunit interface protein [Listeria monocytogenes
HPB2262]
gi|293591416|gb|EFF99750.1| ribosomal subunit interface protein [Listeria monocytogenes J2818]
gi|293594610|gb|EFG02371.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
J1-194]
gi|300514290|gb|EFK41349.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
N1-017]
gi|313617175|gb|EFR89689.1| ribosome-associated factor Y [Listeria innocua FSL S4-378]
gi|313622367|gb|EFR92840.1| ribosome-associated factor Y [Listeria innocua FSL J1-023]
gi|313631963|gb|EFR99088.1| ribosome-associated factor Y [Listeria seeligeri FSL N1-067]
gi|313636335|gb|EFS02123.1| ribosome-associated factor Y [Listeria seeligeri FSL S4-171]
gi|328465117|gb|EGF36385.1| ribosomal subunit interface protein [Listeria monocytogenes J1816]
gi|328471122|gb|EGF42026.1| ribosomal subunit interface protein [Listeria monocytogenes J1-220]
gi|332312941|gb|EGJ26036.1| Sigma 54 modulation protein [Listeria monocytogenes str. Scott A]
gi|345535168|gb|AEO04609.1| ribosomal subunit interface protein [Listeria monocytogenes J0161]
gi|345538047|gb|AEO07487.1| sigma-54 modulation protein [Listeria monocytogenes 10403S]
gi|346425328|gb|AEO26853.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
R2-561]
gi|346647351|gb|AEO39976.1| ribosomal subunit interface protein [Listeria monocytogenes Finland
1998]
gi|384391954|gb|AFH81024.1| ribosomal subunit interface protein [Listeria monocytogenes
07PF0776]
gi|404220056|emb|CBY71420.1| ribosomal subunit interface protein [Listeria monocytogenes ATCC
19117]
gi|404222919|emb|CBY74282.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2378]
gi|404225823|emb|CBY77185.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2540]
gi|404228704|emb|CBY50109.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2755]
gi|404231580|emb|CBY52984.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC5850]
gi|404234506|emb|CBY55909.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2372]
gi|404237443|emb|CBY58845.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2479]
gi|404240228|emb|CBY61629.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC7179]
gi|404246811|emb|CBY05036.1| ribosomal subunit interface protein [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406362276|emb|CBY68549.1| ribosomal subunit interface protein [Listeria monocytogenes L312]
gi|441472296|emb|CCQ22051.1| Uncharacterized protein SE_0534 [Listeria monocytogenes]
gi|441475438|emb|CCQ25192.1| Uncharacterized protein SE_0534 [Listeria monocytogenes N53-1]
Length = 187
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 103/195 (52%), Gaps = 12/195 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE+K+ K + D + V + + + EV
Sbjct: 2 LKYNIRGENIEVTEPIRDYVEKKIDKL---ERYFTETPDANVHVNLKVYSD--KNAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +YASIDL+ ++R++RK K K + R KG R
Sbjct: 57 TI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-KGAER-----DY 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ + EE + +F EIVR K F + P+ EA+ Q+ + H FY + + ET
Sbjct: 110 FAYSDVNGSTPPEENEGDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNG 169
Query: 279 INIVYKRKAGGYGVI 293
NIVY RK G YG+I
Sbjct: 170 TNIVYSRKDGKYGLI 184
>gi|406671409|ref|ZP_11078648.1| ribosomal subunit interface protein [Facklamia hominis CCUG 36813]
gi|405580659|gb|EKB54718.1| ribosomal subunit interface protein [Facklamia hominis CCUG 36813]
Length = 185
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 19/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD-VRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T ++ + E+KV K + + V L V + K EVT+
Sbjct: 6 VRGENIEVTQAIREYAEKKVSKLERFFTDVPNATAYVNLKVYPDKTAK------AEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
V+RAEE +YASID V ++R++RK K K + R KG + +
Sbjct: 59 PLSFLVLRAEETNPDLYASIDFVVDKLERQVRKYKTKINRKSRE-KGLD--------FAL 109
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
D V+ E D + EIVR K E+ P+ EA+ Q+ + HDF+ + + +T EINI
Sbjct: 110 PHLDTPVKEESSDSDL--EIVRSKKIELKPMDSEEAVLQMNMLGHDFFVYHDRDTDEINI 167
Query: 282 VYKRKAGGYGVI 293
VY+RK G YG+I
Sbjct: 168 VYRRKDGRYGLI 179
>gi|421525829|ref|ZP_15972439.1| sigma(54) modulation protein [Fusobacterium nucleatum ChDC F128]
gi|402258398|gb|EJU08870.1| sigma(54) modulation protein [Fusobacterium nucleatum ChDC F128]
Length = 181
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ +L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATETDLYASIDKAVDIMENQLKKHKEKRS----------RAKVQDDT 105
Query: 219 -TQVVENDADVQSEEEDDNFVDE--IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+ D V++EE+ DE +VR+ + + P+ +SEAI QLE ++ F+ F N E
Sbjct: 106 RKKSYSFDYIVEAEEK---LSDEKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNTE 161
Query: 276 TGEINIVYKRKAGGYGVI 293
TG++ +VYKRK G YGVI
Sbjct: 162 TGKMAVVYKRKDGDYGVI 179
>gi|342215022|ref|ZP_08707691.1| ribosomal subunit interface protein [Veillonella sp. oral taxon 780
str. F0422]
gi|341590128|gb|EGS33377.1| ribosomal subunit interface protein [Veillonella sp. oral taxon 780
str. F0422]
Length = 177
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 23/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKNLE+T ++ ++E+++ K + ++ V V LS+ E R+ EV
Sbjct: 1 MKVSVRGKNLEVTAALREYIEKRLEK-LSRYFETPVTVQVVLSLEKEE-------RKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F + V+R E +YA+IDLV I R++ K K + + R GF+
Sbjct: 53 TCFVES-VVLRGVESHLDMYAAIDLVVDKIVRQIHKHKTRLAKRFRKETGFHV------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ V++ E+ E+VR K F + P++V EAI Q+ ++HDF+ F NE+T
Sbjct: 105 -----DVTPVEAIPEEKEL--EVVRRKNFTVRPMSVEEAILQMNLLEHDFFMFFNEDTEI 157
Query: 279 INIVYKRKAGGYGVIIPK 296
+N+VY+R G YG++ P+
Sbjct: 158 MNVVYRRHDGKYGLLEPE 175
>gi|424828122|ref|ZP_18252863.1| ribosomal subunit interface protein [Clostridium sporogenes PA
3679]
gi|365979605|gb|EHN15658.1| ribosomal subunit interface protein [Clostridium sporogenes PA
3679]
Length = 175
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + GKN+++T+ +K VE+K+ K + V V LSV + + EV
Sbjct: 1 MKITVIGKNIDITNALKETVEKKLSKLERFFNPDVV-VTATLSVHKNK-------QTIEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HGV+ R EE E +YASID+V ++R++RK +K + G R +
Sbjct: 53 TI--PFHGVILRGEETTEDMYASIDMVIDKLERQIRK--QKTKLQRKIHDGSLRFQY--- 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ E +N +IV+ K F M P++ EA+ Q+E + H+F+ ++N +T
Sbjct: 106 ----------IPDYESGENKETQIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNADTE 155
Query: 278 EINIVYKRKAGGYGVIIPK 296
E+N++Y+RK G YG+I P+
Sbjct: 156 EVNVIYRRKDGNYGLIEPE 174
>gi|148272233|ref|YP_001221794.1| putative ribosome-associated protein [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830163|emb|CAN01092.1| putative ribosome-associated protein [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 229
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 17/206 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+N E+TD + + EK K +++ + +D+++S + G R E+TL
Sbjct: 5 ITGRNAEITDRFRVYATEKADK-IVQLAEKSISLDIKVSRHSEKSGGSAGDDRVEITLVG 63
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRH---------MKGFNRL 212
V+RAE A +A+ DL + +LR+ K+K+ H G H GF ++
Sbjct: 64 PGP-VIRAESSAADKFAAFDLALGRMLERLRRAKDKKKIHRGNHRPVSLQEAATDGFAQI 122
Query: 213 KVREPVTQVVE-----NDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHD 267
+ +++E + A V ++D++ ++R K F +TV +A+E +E V HD
Sbjct: 123 DLDPADAELIERVNGKSVAPVDQPVDEDDYCPVVIRTKVFPSQSMTVDQALEHMELVGHD 182
Query: 268 FYGFRNEETGEINIVYKRKAGGYGVI 293
F+ F + ET ++VY+RK YGVI
Sbjct: 183 FFLFIDAETDRPSVVYRRKGWDYGVI 208
>gi|417886561|ref|ZP_12530705.1| ribosomal subunit interface protein [Lactobacillus oris F0423]
gi|341592952|gb|EGS35809.1| ribosomal subunit interface protein [Lactobacillus oris F0423]
Length = 179
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 107/202 (52%), Gaps = 34/202 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+E+TD ++++V +++ K +V +H V L V
Sbjct: 2 LKFNIRGENVEVTDAIRDYVVKRISKLQKFFEDSVEATAH------VNLKVYPN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y S+DLV+ ++R++RK K K + R KG
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
L + V +D D S+E +IVR K + P+ EA+ Q++ + HDF+ F
Sbjct: 108 L-------EFVPSDDDSASDEL------KIVRTKQVSLKPMDPEEAVLQMDMLGHDFFVF 154
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
++ ET +IVY+R+ G YG+I
Sbjct: 155 QDAETNGTSIVYRRRDGRYGLI 176
>gi|322517384|ref|ZP_08070258.1| ribosomal subunit interface protein [Streptococcus vestibularis
ATCC 49124]
gi|322123982|gb|EFX95538.1| ribosomal subunit interface protein [Streptococcus vestibularis
ATCC 49124]
Length = 182
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 113/198 (57%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K V K+ + +E+ R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSK-VEKYFNEDQELHARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T +RAE+ ++ +Y SIDLV I+R++RK K K + K RE V
Sbjct: 57 TIPTGS-VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAR-----------KHREKV 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
++ A+ EE ++ E+VR K E+ P+ V EAI Q+E + HDF+ + + +
Sbjct: 105 SRGEVFSAEFNKEEIEEAPTVEVVRTKNIELKPMDVEEAILQMELLGHDFFIYTDSKDHM 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++YKR+ G YG+I K
Sbjct: 165 TNVLYKREDGNYGLIEAK 182
>gi|313472387|ref|ZP_07812879.1| ribosomal subunit interface protein [Lactobacillus jensenii 1153]
gi|313449137|gb|EEQ68754.2| ribosomal subunit interface protein [Lactobacillus jensenii 1153]
Length = 187
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 108/197 (54%), Gaps = 23/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L +V V L V K
Sbjct: 8 LKYNVRGENIEVTEALRSYVEKRLEK-LEKYFELTSDVIAHVNLKVYKNHDAK------V 60
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE ++ +Y SID VS ++R++RK K + + GR KG +
Sbjct: 61 EVTI-PLPYLVLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGRE-KGVKDFFIET 118
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
P +EEE +IVR K + P+ EAI Q++ ++HDF+ F++ ET
Sbjct: 119 P------------AEEEKPTSEFDIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAET 166
Query: 277 GEINIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 167 NGTSVVYRRNDGRYGLI 183
>gi|238854886|ref|ZP_04645216.1| ribosome-associated protein Y [Lactobacillus jensenii 269-3]
gi|260664173|ref|ZP_05865026.1| ribosome-associated protein Y [Lactobacillus jensenii SJ-7A-US]
gi|238832676|gb|EEQ24983.1| ribosome-associated protein Y [Lactobacillus jensenii 269-3]
gi|260562059|gb|EEX28028.1| ribosome-associated protein Y [Lactobacillus jensenii SJ-7A-US]
Length = 181
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 108/197 (54%), Gaps = 23/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L +V V L V K
Sbjct: 2 LKYNVRGENIEVTEALRSYVEKRLEK-LEKYFELTSDVIAHVNLKVYKNHDAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE ++ +Y SID VS ++R++RK K + + GR KG +
Sbjct: 55 EVTI-PLPYLVLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGRE-KGVKDFFIET 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
P +EEE +IVR K + P+ EAI Q++ ++HDF+ F++ ET
Sbjct: 113 P------------AEEEKPTSEFDIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAET 160
Query: 277 GEINIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 161 NGTSVVYRRNDGRYGLI 177
>gi|269837492|ref|YP_003319720.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Sphaerobacter thermophilus DSM 20745]
gi|269786755|gb|ACZ38898.1| sigma 54 modulation protein/ribosomal protein S30EA [Sphaerobacter
thermophilus DSM 20745]
Length = 194
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 108/194 (55%), Gaps = 6/194 (3%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+ +NL LTD ++ ++E ++ + + K V D + +R G + T+ T
Sbjct: 5 IKARNLRLTDALQEYIESRLQR-LDKIDQKV--TDAKFEIRSERNRTGGEQMVAQFTIAT 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K ++R EE ++ +IDL ++R++R+ ++K + R + + EP+
Sbjct: 62 K-DAILRTEEKNRDIHVAIDLAIERMERQIRRFRDKRVFYRRRQRQMA-AEAGEPLPVST 119
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ DV +EEE++ + +VR K F++ P++ EAIEQ+E + HDF+ F N + EIN++
Sbjct: 120 LDGLDV-AEEEEETPSELLVRRKRFKIQPMSEEEAIEQMELLGHDFFVFFNPDLAEINVL 178
Query: 283 YKRKAGGYGVIIPK 296
Y+R+ G YGVI P+
Sbjct: 179 YRRRDGLYGVIQPE 192
>gi|399047324|ref|ZP_10739383.1| ribosomal subunit interface protein [Brevibacillus sp. CF112]
gi|433543809|ref|ZP_20500207.1| hypothetical protein D478_08903 [Brevibacillus agri BAB-2500]
gi|398054761|gb|EJL46871.1| ribosomal subunit interface protein [Brevibacillus sp. CF112]
gi|432184896|gb|ELK42399.1| hypothetical protein D478_08903 [Brevibacillus agri BAB-2500]
Length = 184
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 114/198 (57%), Gaps = 14/198 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+++T +K +VE+KVG+ +V V + V GE EV
Sbjct: 1 MKFNIRGENIQVTAALKEYVEKKVGRLEKYFETTPADVQVTMHVHRGEGT-------IEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAEE E +YA+IDLV+ ++R++RK K K R ++ + KV +
Sbjct: 54 TI-PLAGVIIRAEETHEDMYAAIDLVAEKLERQVRKHKTKLM---RKLRVDSAAKVGQRD 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+Q V A + + ++++ +IVR K F++ P+ EA+ Q++ + H F+ F+N +T +
Sbjct: 110 SQPV---AVMIPDVDEEDVDIDIVRTKRFDLKPMDAQEAVMQMDMLGHSFFVFQNSDTND 166
Query: 279 INIVYKRKAGGYGVIIPK 296
+++VY+R G YG+I PK
Sbjct: 167 VSVVYRRNDGRYGLIEPK 184
>gi|294783210|ref|ZP_06748534.1| sigma(54) modulation protein [Fusobacterium sp. 1_1_41FAA]
gi|340753701|ref|ZP_08690477.1| sigma(54) modulation protein [Fusobacterium sp. 2_1_31]
gi|422316389|ref|ZP_16397788.1| ribosomal subunit interface protein [Fusobacterium periodonticum
D10]
gi|229423264|gb|EEO38311.1| sigma(54) modulation protein [Fusobacterium sp. 2_1_31]
gi|294480088|gb|EFG27865.1| sigma(54) modulation protein [Fusobacterium sp. 1_1_41FAA]
gi|404591201|gb|EKA93378.1| ribosomal subunit interface protein [Fusobacterium periodonticum
D10]
Length = 181
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 30/202 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD +K + EEK+ + V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIKKYAEEKISR-VEKFNDSILKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ +L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATETDLYASIDKAVDIMENQLKKHKEKRS----------RAKVQDDT 105
Query: 219 TQ-------VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
+ +VE + + E++ +VR+ + + P+ +SEAI QLE ++ F+ F
Sbjct: 106 RKKSYSFDYIVEPEEKISDEKK-------LVRV-YLPLKPMEISEAILQLEYLNRVFFAF 157
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
N ETG++ +VYKRK G YGVI
Sbjct: 158 TNSETGKMAVVYKRKDGDYGVI 179
>gi|125623477|ref|YP_001031960.1| sigma 54 modulation protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|385838924|ref|YP_005876554.1| Ribosomal subunit interface protein [Lactococcus lactis subsp.
cremoris A76]
gi|389853803|ref|YP_006356047.1| putative sigma 54 modulation protein [Lactococcus lactis subsp.
cremoris NZ9000]
gi|7800896|emb|CAB91549.1| hypothetical protein [Lactococcus lactis]
gi|124492285|emb|CAL97217.1| Putative Sigma 54 modulation protein [Lactococcus lactis subsp.
cremoris MG1363]
gi|300070225|gb|ADJ59625.1| putative sigma 54 modulation protein [Lactococcus lactis subsp.
cremoris NZ9000]
gi|358750152|gb|AEU41131.1| Ribosomal subunit interface protein [Lactococcus lactis subsp.
cremoris A76]
Length = 185
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 110/198 (55%), Gaps = 20/198 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++ +VE+K+GK + K+ + EV ++++ + + EV
Sbjct: 2 IKFNIRGENVEVTDAIRAYVEDKIGK-LDKYFNDGHEVTAYVNLKVYTEKRA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
TL K+ +RAE+ ++ +Y+SID V ++R++RK K + + R+ P
Sbjct: 57 TL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAV---------PT 106
Query: 219 TQVVEND---ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
QV ++ D E +D+ +IVR K + P+ EA+ Q++ + HDFY F + +
Sbjct: 107 GQVFGDEFAPLDTTDEVAEDHV--DIVRTKHVALKPMDAEEAVLQMDMLGHDFYVFTDAD 164
Query: 276 TGEINIVYKRKAGGYGVI 293
+ ++VY+R G YG+I
Sbjct: 165 SNGTHVVYRRTDGRYGLI 182
>gi|295398529|ref|ZP_06808563.1| ribosomal subunit interface protein [Aerococcus viridans ATCC
11563]
gi|294973252|gb|EFG49045.1| ribosomal subunit interface protein [Aerococcus viridans ATCC
11563]
Length = 194
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 13/192 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ + E+K+ K + D V + + + EVT+
Sbjct: 6 VRGENIEITPAIREYAEKKISKI---ERYFTDSPDATAYVNAKVYPN--KDAKAEVTIPL 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+RAEE ++ +Y SIDLV ++R++RK K K + R G P
Sbjct: 61 TGGLTLRAEETSQDLYGSIDLVVDKLERQVRKYKTKMNRKPRVSAGL-------PGAVET 113
Query: 223 ENDAD-VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ AD V+ E E+ + +IVR K + P+T EA+ Q+E + H+F+ F + ETG+ +
Sbjct: 114 QVQADRVEQEAEEGHDPIKIVRRKTLSVKPMTAEEAVLQMEMLGHNFFIFEDAETGKGAL 173
Query: 282 VYKRKAGGYGVI 293
VY R+ G YG+I
Sbjct: 174 VYARRKGSYGLI 185
>gi|29376312|ref|NP_815466.1| ribosomal subunit interface protein [Enterococcus faecalis V583]
gi|255972542|ref|ZP_05423128.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis T1]
gi|255975655|ref|ZP_05426241.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis T2]
gi|256619258|ref|ZP_05476104.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis ATCC 4200]
gi|256762750|ref|ZP_05503330.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis T3]
gi|256853319|ref|ZP_05558689.1| ribosomal subunit interface protein [Enterococcus faecalis T8]
gi|256959171|ref|ZP_05563342.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis DS5]
gi|256961734|ref|ZP_05565905.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis Merz96]
gi|256964930|ref|ZP_05569101.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis HIP11704]
gi|257079208|ref|ZP_05573569.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis JH1]
gi|257082361|ref|ZP_05576722.1| sigma 54 modulation protein [Enterococcus faecalis E1Sol]
gi|257084987|ref|ZP_05579348.1| sigma 54 modulation protein [Enterococcus faecalis Fly1]
gi|257087049|ref|ZP_05581410.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis D6]
gi|257090080|ref|ZP_05584441.1| 30S ribosomal protein S30EA [Enterococcus faecalis CH188]
gi|257416285|ref|ZP_05593279.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis ARO1/DG]
gi|257419491|ref|ZP_05596485.1| 30S ribosomal protein S30EA [Enterococcus faecalis T11]
gi|257422369|ref|ZP_05599359.1| ribosomal subunit interface protein [Enterococcus faecalis X98]
gi|294779422|ref|ZP_06744823.1| ribosomal subunit interface protein [Enterococcus faecalis PC1.1]
gi|300860732|ref|ZP_07106819.1| ribosomal subunit interface protein [Enterococcus faecalis TUSoD
Ef11]
gi|384518789|ref|YP_005706094.1| ribosomal subunit interface protein [Enterococcus faecalis 62]
gi|397700072|ref|YP_006537860.1| ribosomal subunit interface protein [Enterococcus faecalis D32]
gi|421512668|ref|ZP_15959470.1| Ribosomal subunit interface protein [Enterococcus faecalis ATCC
29212]
gi|428767256|ref|YP_007153367.1| ribosomal protein S30Ae/sigma 54 modulation family protein
[Enterococcus faecalis str. Symbioflor 1]
gi|430361791|ref|ZP_19426868.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
OG1X]
gi|430368473|ref|ZP_19428214.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis M7]
gi|29343775|gb|AAO81536.1| ribosomal subunit interface protein [Enterococcus faecalis V583]
gi|255963560|gb|EET96036.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis T1]
gi|255968527|gb|EET99149.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis T2]
gi|256598785|gb|EEU17961.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis ATCC 4200]
gi|256684001|gb|EEU23696.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis T3]
gi|256711778|gb|EEU26816.1| ribosomal subunit interface protein [Enterococcus faecalis T8]
gi|256949667|gb|EEU66299.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis DS5]
gi|256952230|gb|EEU68862.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis Merz96]
gi|256955426|gb|EEU72058.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis HIP11704]
gi|256987238|gb|EEU74540.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis JH1]
gi|256990391|gb|EEU77693.1| sigma 54 modulation protein [Enterococcus faecalis E1Sol]
gi|256993017|gb|EEU80319.1| sigma 54 modulation protein [Enterococcus faecalis Fly1]
gi|256995079|gb|EEU82381.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis D6]
gi|256998892|gb|EEU85412.1| 30S ribosomal protein S30EA [Enterococcus faecalis CH188]
gi|257158113|gb|EEU88073.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis ARO1/DG]
gi|257161319|gb|EEU91279.1| 30S ribosomal protein S30EA [Enterococcus faecalis T11]
gi|257164193|gb|EEU94153.1| ribosomal subunit interface protein [Enterococcus faecalis X98]
gi|294453551|gb|EFG21952.1| ribosomal subunit interface protein [Enterococcus faecalis PC1.1]
gi|295113139|emb|CBL31776.1| ribosomal subunit interface protein [Enterococcus sp. 7L76]
gi|300849771|gb|EFK77521.1| ribosomal subunit interface protein [Enterococcus faecalis TUSoD
Ef11]
gi|323480922|gb|ADX80361.1| ribosomal subunit interface protein [Enterococcus faecalis 62]
gi|397336711|gb|AFO44383.1| ribosomal subunit interface protein [Enterococcus faecalis D32]
gi|401674235|gb|EJS80591.1| Ribosomal subunit interface protein [Enterococcus faecalis ATCC
29212]
gi|427185429|emb|CCO72653.1| ribosomal protein S30Ae/sigma 54 modulation family protein
[Enterococcus faecalis str. Symbioflor 1]
gi|429512344|gb|ELA01952.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
OG1X]
gi|429516229|gb|ELA05723.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis M7]
Length = 183
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 18/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T+ ++++VE+KVGK S V V L V + K EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKLERYFSDSPEATVHVNLKVYTEKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YASIDLV ++R++RK K K + R G N K V V
Sbjct: 59 PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRET-GRNNTKA--AVFLV 115
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
E + SE + IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 116 GEETEETPSELD-------IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 282 VYKRKAGGYGVI 293
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|104773714|ref|YP_618694.1| ribosomal protein S30EA [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|12642652|gb|AAK00333.1|AF320250_6 YvyD [Lactobacillus delbrueckii]
gi|103422795|emb|CAI97436.1| Ribosomal protein S30EA [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 185
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 111/197 (56%), Gaps = 19/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L ++V V L V K
Sbjct: 2 LKYNVRGENIEVTEALRDYVEKRLTK-LEKYFDLSQDVIAHVNLKVYRDHSAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG + E
Sbjct: 55 EVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGVEEFFIPE 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
DA V+ E+ + + +IVR K + P+ EAI Q++ ++HDF+ F++ ET
Sbjct: 113 --------DAPVEEEKVEKAPMFKIVRNKRVNLKPMDPEEAILQMDMLEHDFFVFQDAET 164
Query: 277 GEINIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 165 NGTSVVYRRNDGSYGLI 181
>gi|333394244|ref|ZP_08476063.1| 30S ribosomal interface protein S30EA [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|336391391|ref|ZP_08572790.1| 30S ribosomal interface protein S30EA [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 185
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 104/192 (54%), Gaps = 18/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T ++++VE+++GK ++ V L V + K EVT+
Sbjct: 6 VRGENIEVTAAIRSYVEKRLGKLEKYFTNTAESTAHVNLKVYPDKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ +RAEE + +YAS+DLV+ ++R++RK K K + R KG + P
Sbjct: 59 PLPYLTLRAEETSPDLYASVDLVTDKLERQIRKFKTKINRKSRE-KGIRDFDLTVPAA-- 115
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
DA+ S+EE + +VR K + P+ EAI Q++ + H+F+ F + ET +I
Sbjct: 116 ---DANDDSKEEKLD----VVRTKRVNLKPMDSEEAILQMDMLGHNFFIFEDAETNGTSI 168
Query: 282 VYKRKAGGYGVI 293
VYKR+ G YG+I
Sbjct: 169 VYKRRDGRYGLI 180
>gi|312862987|ref|ZP_07723226.1| ribosomal subunit interface protein [Streptococcus vestibularis
F0396]
gi|311101482|gb|EFQ59686.1| ribosomal subunit interface protein [Streptococcus vestibularis
F0396]
Length = 182
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 113/198 (57%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K V K+ + +E+ R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSK-VEKYFNEDQELHARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T +RAE+ ++ +Y SIDLV I+R++RK K K + K RE V
Sbjct: 57 TIPTGS-VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAR-----------KHREKV 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
++ A+ EE ++ E+VR K E+ P+ V EAI Q+E + HDF+ + + +
Sbjct: 105 SRGEVFSAEFTKEEIEEAPTVEVVRTKNIELKPMDVEEAILQMELLGHDFFIYTDSKDHM 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++YKR+ G YG+I K
Sbjct: 165 TNVLYKREDGNYGLIEAK 182
>gi|440783100|ref|ZP_20960911.1| Ribosome-associated protein Y (PSrp-1) [Clostridium pasteurianum
DSM 525]
gi|440219675|gb|ELP58886.1| Ribosome-associated protein Y (PSrp-1) [Clostridium pasteurianum
DSM 525]
Length = 178
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 110/200 (55%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I GKN+E+T+ +++ +E+K+ K + ++ + V LSV + EV
Sbjct: 1 MRITISGKNVEVTNGLRSAIEKKLTK-LDRYFNPDVTAHVTLSVENYR-------QIVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVRE 216
T+ ++R EE +YA+IDLV+ ++R++RK K K +G ++
Sbjct: 53 TI-PFGGAILRGEESNTDMYAAIDLVTDKMERQVRKQKTKLDRKKYGASLR--------- 102
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
++ D + + +DD IV+ K F + P++ EA+ Q+E + H+F+ F+N ++
Sbjct: 103 -----FQSIPDFEEDNKDDVKEPSIVKTKRFAIKPMSEEEAVLQMELLAHNFFVFQNADS 157
Query: 277 GEINIVYKRKAGGYGVIIPK 296
E+N+VYKRK G YG+I P+
Sbjct: 158 SEVNVVYKRKDGNYGLIEPE 177
>gi|422759562|ref|ZP_16813324.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus dysgalactiae subsp. dysgalactiae ATCC
27957]
gi|322412397|gb|EFY03305.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus dysgalactiae subsp. dysgalactiae ATCC
27957]
Length = 182
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 112/198 (56%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ + +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFNEEQEIDARVNLKVYR----EKSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
QV + ++E+ D+ ++VR K + P+ V EA Q+E + HDF+ + + E GE
Sbjct: 107 GQVF--TTEFEAEQVDETPEVKVVRTKNLTLKPMDVEEARLQMELLGHDFFIYTDAEDGE 164
Query: 279 INIVYKRKAGGYGVIIPK 296
NI+Y+R+ G G+I K
Sbjct: 165 TNILYRREDGDLGLIEAK 182
>gi|312898759|ref|ZP_07758148.1| ribosomal subunit interface protein [Megasphaera micronuciformis
F0359]
gi|310620190|gb|EFQ03761.1| ribosomal subunit interface protein [Megasphaera micronuciformis
F0359]
Length = 178
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 105/199 (52%), Gaps = 33/199 (16%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSH-LVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++GKNLE+T +K++V LKH +++ D ++++ + R + E+TL
Sbjct: 9 VRGKNLEITAALKDYV--------LKHEKKIMKYFDTDVALQAMLSVEKER-KIAELTL- 58
Query: 162 TKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK--GFNRLKVREPV 218
+ GVV R E E +YA+ID+V + R++ K K K + R +K F V E
Sbjct: 59 -RVDGVVLRVVETGEDMYAAIDIVFDKMVRQIHKYKTKLA---RRIKDGSFKPTLVTE-- 112
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
S E D+ F EIVR K F P+ V EAI Q+ V HDF+ F N +T +
Sbjct: 113 -----------SPESDEAF--EIVRTKTFTPQPMDVEEAILQMNLVGHDFFVFLNADTDK 159
Query: 279 INIVYKRKAGGYGVIIPKG 297
I++VYKRK G YG+I P+
Sbjct: 160 ISVVYKRKHGKYGLIEPEA 178
>gi|379012636|ref|YP_005270448.1| ribosomal subunit interface protein Cls [Acetobacterium woodii DSM
1030]
gi|375303425|gb|AFA49559.1| ribosomal subunit interface protein Cls [Acetobacterium woodii DSM
1030]
Length = 177
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 22/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I GKN+ +++ +K +++K+GK + +E +V + F K + EV
Sbjct: 1 MRFTIYGKNMHVSEGLKETLKKKLGKF---ERYFSQETEVYAT-----FSKEKNYQMLEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K ++RAEE +E + SI+ V + ++ +LRK K K R+ N+
Sbjct: 53 TIPVGK-TILRAEERSEDMVTSIENVINKLEGQLRKHKTKLQK--RNQDEANKF------ 103
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
N ++S E D F ++VR K F + P+ V EA Q+E + H+F+ F N +T +
Sbjct: 104 -----NLEGIESSAEADGFQPKVVRTKKFAVKPMNVDEATLQMELLGHNFFVFLNGDTDD 158
Query: 279 INIVYKRKAGGYGVIIP 295
+N+VY RK G YG+I P
Sbjct: 159 VNVVYMRKDGNYGLIEP 175
>gi|317496129|ref|ZP_07954489.1| sigma 54 modulation protein/S30EA ribosomal protein [Gemella
morbillorum M424]
gi|316913704|gb|EFV35190.1| sigma 54 modulation protein/S30EA ribosomal protein [Gemella
morbillorum M424]
Length = 181
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+NLE+T ++ +VE KV K + + + + + + E+T+
Sbjct: 6 VRGENLEITQAIREYVENKVSKL---EKYFADSLQANVYANAKVYKNNKK--KIEITVPL 60
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K GV +RAEE E +YA+IDLV ++R++RK K + + GR KGF V
Sbjct: 61 K--GVTLRAEETNEDLYAAIDLVVDKLERQMRKHKTRINRKGRE-KGF-----------V 106
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
EN E+ ++ +D ++K ++ +T EA+ Q+E + HDF+ F + T EI+I
Sbjct: 107 EENLLTSALEDVEETSLD-FGKVKQLKVETMTRDEAVFQMELLGHDFFAFLDANTNEISI 165
Query: 282 VYKRKAGGYGVI 293
VYKR+ GYGV+
Sbjct: 166 VYKRRDTGYGVL 177
>gi|227518953|ref|ZP_03949002.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
TX0104]
gi|227553574|ref|ZP_03983623.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
HH22]
gi|229545624|ref|ZP_04434349.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
TX1322]
gi|229549814|ref|ZP_04438539.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis ATCC
29200]
gi|293383439|ref|ZP_06629352.1| ribosomal subunit interface protein [Enterococcus faecalis R712]
gi|293388908|ref|ZP_06633393.1| ribosomal subunit interface protein [Enterococcus faecalis S613]
gi|307269579|ref|ZP_07550918.1| ribosomal subunit interface protein [Enterococcus faecalis TX4248]
gi|307273023|ref|ZP_07554269.1| ribosomal subunit interface protein [Enterococcus faecalis TX0855]
gi|307275773|ref|ZP_07556912.1| ribosomal subunit interface protein [Enterococcus faecalis TX2134]
gi|307277869|ref|ZP_07558953.1| ribosomal subunit interface protein [Enterococcus faecalis TX0860]
gi|307289306|ref|ZP_07569262.1| ribosomal subunit interface protein [Enterococcus faecalis TX0109]
gi|307291795|ref|ZP_07571666.1| ribosomal subunit interface protein [Enterococcus faecalis TX0411]
gi|312901828|ref|ZP_07761093.1| ribosomal subunit interface protein [Enterococcus faecalis TX0470]
gi|312903516|ref|ZP_07762696.1| ribosomal subunit interface protein [Enterococcus faecalis TX0635]
gi|312907733|ref|ZP_07766724.1| ribosomal subunit interface protein [Enterococcus faecalis DAPTO
512]
gi|312910351|ref|ZP_07769198.1| ribosomal subunit interface protein [Enterococcus faecalis DAPTO
516]
gi|312951697|ref|ZP_07770592.1| ribosomal subunit interface protein [Enterococcus faecalis TX0102]
gi|384513441|ref|YP_005708534.1| ribosomal subunit interface protein [Enterococcus faecalis OG1RF]
gi|422685788|ref|ZP_16744001.1| ribosomal subunit interface protein [Enterococcus faecalis TX4000]
gi|422689167|ref|ZP_16747279.1| ribosomal subunit interface protein [Enterococcus faecalis TX0630]
gi|422692823|ref|ZP_16750838.1| ribosomal subunit interface protein [Enterococcus faecalis TX0031]
gi|422695180|ref|ZP_16753168.1| ribosomal subunit interface protein [Enterococcus faecalis TX4244]
gi|422696616|ref|ZP_16754572.1| ribosomal subunit interface protein [Enterococcus faecalis TX1346]
gi|422701961|ref|ZP_16759801.1| ribosomal subunit interface protein [Enterococcus faecalis TX1342]
gi|422704674|ref|ZP_16762484.1| ribosomal subunit interface protein [Enterococcus faecalis TX1302]
gi|422706468|ref|ZP_16764166.1| ribosomal subunit interface protein [Enterococcus faecalis TX0043]
gi|422708669|ref|ZP_16766197.1| ribosomal subunit interface protein [Enterococcus faecalis TX0027]
gi|422714422|ref|ZP_16771148.1| ribosomal subunit interface protein [Enterococcus faecalis TX0309A]
gi|422715679|ref|ZP_16772395.1| ribosomal subunit interface protein [Enterococcus faecalis TX0309B]
gi|422720719|ref|ZP_16777328.1| ribosomal subunit interface protein [Enterococcus faecalis TX0017]
gi|422722026|ref|ZP_16778603.1| ribosomal subunit interface protein [Enterococcus faecalis TX2137]
gi|422727251|ref|ZP_16783694.1| ribosomal subunit interface protein [Enterococcus faecalis TX0312]
gi|422729704|ref|ZP_16786102.1| ribosomal subunit interface protein [Enterococcus faecalis TX0012]
gi|422731550|ref|ZP_16787908.1| ribosomal subunit interface protein [Enterococcus faecalis TX0645]
gi|422735921|ref|ZP_16792187.1| ribosomal subunit interface protein [Enterococcus faecalis TX1341]
gi|422739202|ref|ZP_16794385.1| ribosomal subunit interface protein [Enterococcus faecalis TX2141]
gi|424673019|ref|ZP_18109962.1| ribosomal subunit interface protein [Enterococcus faecalis 599]
gi|424676567|ref|ZP_18113438.1| ribosomal subunit interface protein [Enterococcus faecalis ERV103]
gi|424681618|ref|ZP_18118405.1| ribosomal subunit interface protein [Enterococcus faecalis ERV116]
gi|424683808|ref|ZP_18120558.1| ribosomal subunit interface protein [Enterococcus faecalis ERV129]
gi|424686288|ref|ZP_18122956.1| ribosomal subunit interface protein [Enterococcus faecalis ERV25]
gi|424690440|ref|ZP_18126975.1| ribosomal subunit interface protein [Enterococcus faecalis ERV31]
gi|424695534|ref|ZP_18131917.1| ribosomal subunit interface protein [Enterococcus faecalis ERV37]
gi|424696728|ref|ZP_18133069.1| ribosomal subunit interface protein [Enterococcus faecalis ERV41]
gi|424699886|ref|ZP_18136097.1| ribosomal subunit interface protein [Enterococcus faecalis ERV62]
gi|424703100|ref|ZP_18139234.1| ribosomal subunit interface protein [Enterococcus faecalis ERV63]
gi|424707403|ref|ZP_18143387.1| ribosomal subunit interface protein [Enterococcus faecalis ERV65]
gi|424716937|ref|ZP_18146235.1| ribosomal subunit interface protein [Enterococcus faecalis ERV68]
gi|424720515|ref|ZP_18149616.1| ribosomal subunit interface protein [Enterococcus faecalis ERV72]
gi|424724063|ref|ZP_18153012.1| ribosomal subunit interface protein [Enterococcus faecalis ERV73]
gi|424733655|ref|ZP_18162210.1| ribosomal subunit interface protein [Enterococcus faecalis ERV81]
gi|424744046|ref|ZP_18172351.1| ribosomal subunit interface protein [Enterococcus faecalis ERV85]
gi|424750446|ref|ZP_18178510.1| ribosomal subunit interface protein [Enterococcus faecalis ERV93]
gi|424761117|ref|ZP_18188699.1| ribosomal subunit interface protein [Enterococcus faecalis R508]
gi|227073642|gb|EEI11605.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
TX0104]
gi|227177267|gb|EEI58239.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
HH22]
gi|229305083|gb|EEN71079.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis ATCC
29200]
gi|229309282|gb|EEN75269.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
TX1322]
gi|291079230|gb|EFE16594.1| ribosomal subunit interface protein [Enterococcus faecalis R712]
gi|291081689|gb|EFE18652.1| ribosomal subunit interface protein [Enterococcus faecalis S613]
gi|306497061|gb|EFM66607.1| ribosomal subunit interface protein [Enterococcus faecalis TX0411]
gi|306500015|gb|EFM69376.1| ribosomal subunit interface protein [Enterococcus faecalis TX0109]
gi|306505266|gb|EFM74452.1| ribosomal subunit interface protein [Enterococcus faecalis TX0860]
gi|306507465|gb|EFM76596.1| ribosomal subunit interface protein [Enterococcus faecalis TX2134]
gi|306510008|gb|EFM79032.1| ribosomal subunit interface protein [Enterococcus faecalis TX0855]
gi|306514199|gb|EFM82775.1| ribosomal subunit interface protein [Enterococcus faecalis TX4248]
gi|310626761|gb|EFQ10044.1| ribosomal subunit interface protein [Enterococcus faecalis DAPTO
512]
gi|310630414|gb|EFQ13697.1| ribosomal subunit interface protein [Enterococcus faecalis TX0102]
gi|310633392|gb|EFQ16675.1| ribosomal subunit interface protein [Enterococcus faecalis TX0635]
gi|311289624|gb|EFQ68180.1| ribosomal subunit interface protein [Enterococcus faecalis DAPTO
516]
gi|311291021|gb|EFQ69577.1| ribosomal subunit interface protein [Enterococcus faecalis TX0470]
gi|315027923|gb|EFT39855.1| ribosomal subunit interface protein [Enterococcus faecalis TX2137]
gi|315029500|gb|EFT41432.1| ribosomal subunit interface protein [Enterococcus faecalis TX4000]
gi|315031973|gb|EFT43905.1| ribosomal subunit interface protein [Enterococcus faecalis TX0017]
gi|315037177|gb|EFT49109.1| ribosomal subunit interface protein [Enterococcus faecalis TX0027]
gi|315145006|gb|EFT89022.1| ribosomal subunit interface protein [Enterococcus faecalis TX2141]
gi|315147463|gb|EFT91479.1| ribosomal subunit interface protein [Enterococcus faecalis TX4244]
gi|315149824|gb|EFT93840.1| ribosomal subunit interface protein [Enterococcus faecalis TX0012]
gi|315152282|gb|EFT96298.1| ribosomal subunit interface protein [Enterococcus faecalis TX0031]
gi|315156083|gb|EFU00100.1| ribosomal subunit interface protein [Enterococcus faecalis TX0043]
gi|315158276|gb|EFU02293.1| ribosomal subunit interface protein [Enterococcus faecalis TX0312]
gi|315162417|gb|EFU06434.1| ribosomal subunit interface protein [Enterococcus faecalis TX0645]
gi|315163920|gb|EFU07937.1| ribosomal subunit interface protein [Enterococcus faecalis TX1302]
gi|315167272|gb|EFU11289.1| ribosomal subunit interface protein [Enterococcus faecalis TX1341]
gi|315169442|gb|EFU13459.1| ribosomal subunit interface protein [Enterococcus faecalis TX1342]
gi|315174823|gb|EFU18840.1| ribosomal subunit interface protein [Enterococcus faecalis TX1346]
gi|315576024|gb|EFU88215.1| ribosomal subunit interface protein [Enterococcus faecalis TX0309B]
gi|315577788|gb|EFU89979.1| ribosomal subunit interface protein [Enterococcus faecalis TX0630]
gi|315580599|gb|EFU92790.1| ribosomal subunit interface protein [Enterococcus faecalis TX0309A]
gi|327535330|gb|AEA94164.1| ribosomal subunit interface protein [Enterococcus faecalis OG1RF]
gi|402350717|gb|EJU85615.1| ribosomal subunit interface protein [Enterococcus faecalis ERV116]
gi|402352829|gb|EJU87665.1| ribosomal subunit interface protein [Enterococcus faecalis 599]
gi|402356579|gb|EJU91310.1| ribosomal subunit interface protein [Enterococcus faecalis ERV103]
gi|402364173|gb|EJU98616.1| ribosomal subunit interface protein [Enterococcus faecalis ERV129]
gi|402364283|gb|EJU98725.1| ribosomal subunit interface protein [Enterococcus faecalis ERV31]
gi|402367822|gb|EJV02159.1| ribosomal subunit interface protein [Enterococcus faecalis ERV25]
gi|402368229|gb|EJV02549.1| ribosomal subunit interface protein [Enterococcus faecalis ERV37]
gi|402375385|gb|EJV09372.1| ribosomal subunit interface protein [Enterococcus faecalis ERV62]
gi|402377057|gb|EJV10968.1| ribosomal subunit interface protein [Enterococcus faecalis ERV41]
gi|402385001|gb|EJV18542.1| ribosomal subunit interface protein [Enterococcus faecalis ERV65]
gi|402385105|gb|EJV18645.1| ribosomal subunit interface protein [Enterococcus faecalis ERV63]
gi|402386285|gb|EJV19791.1| ribosomal subunit interface protein [Enterococcus faecalis ERV68]
gi|402391268|gb|EJV24579.1| ribosomal subunit interface protein [Enterococcus faecalis ERV81]
gi|402392986|gb|EJV26216.1| ribosomal subunit interface protein [Enterococcus faecalis ERV72]
gi|402396044|gb|EJV29119.1| ribosomal subunit interface protein [Enterococcus faecalis ERV73]
gi|402399469|gb|EJV32341.1| ribosomal subunit interface protein [Enterococcus faecalis ERV85]
gi|402402586|gb|EJV35294.1| ribosomal subunit interface protein [Enterococcus faecalis R508]
gi|402406745|gb|EJV39291.1| ribosomal subunit interface protein [Enterococcus faecalis ERV93]
Length = 189
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 105/201 (52%), Gaps = 18/201 (8%)
Query: 94 GPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPR 152
G + + ++G+N+E+T+ ++++VE+KVGK S V V L V + K
Sbjct: 3 GVIVMFRYNVRGENIEVTEAIRDYVEKKVGKLERYFSDSPEATVHVNLKVYTEKTAK--- 59
Query: 153 IRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
EVT+ + V+RAEE + +YASIDLV ++R++RK K K + R G N
Sbjct: 60 ---VEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRET-GRNNT 114
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
K V V E + SE + IVR K + P+ EA+ Q+ + H+F+ F
Sbjct: 115 KA--AVFLVGEETEETPSELD-------IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFE 165
Query: 273 NEETGEINIVYKRKAGGYGVI 293
+ ET +IVY+RK G YG+I
Sbjct: 166 DAETNGTSIVYRRKDGKYGLI 186
>gi|187934798|ref|YP_001884725.1| ribosome-associated protein Y [Clostridium botulinum B str. Eklund
17B]
gi|188590439|ref|YP_001919912.1| 30S ribosomal protein S30AE family [Clostridium botulinum E3 str.
Alaska E43]
gi|251779001|ref|ZP_04821921.1| ribosomal protein S30AE family [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|187722951|gb|ACD24172.1| ribosome-associated protein Y [Clostridium botulinum B str. Eklund
17B]
gi|188500720|gb|ACD53856.1| ribosomal protein S30AE family [Clostridium botulinum E3 str.
Alaska E43]
gi|243083316|gb|EES49206.1| ribosomal protein S30AE family [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 177
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 105/197 (53%), Gaps = 23/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+I+ KN+ELT+ ++ VE+K+ K + K+ + E LSV+ R R+
Sbjct: 1 MKVIVIAKNIELTNALREMVEKKISK-LGKYFNSDIEAKATLSVQ--------RNRQIVE 51
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ V+R EE E +Y +IDLV+ ++R++RK K K S F + PV
Sbjct: 52 VMIPFNGVVLRGEEANEDMYRAIDLVAEKLERQIRKQKTKLSRKKSGSLKFGEIVDLSPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
V EE ++V+ K F + P+ + EAI Q+E V H+F+ +++ ++ +
Sbjct: 112 A--------VDEEEA------KLVKRKRFGVKPMDIDEAILQMELVGHNFFVYQDVDSNK 157
Query: 279 INIVYKRKAGGYGVIIP 295
IN++YKRK G YG++ P
Sbjct: 158 INVIYKRKDGDYGLLDP 174
>gi|410729115|ref|ZP_11367199.1| ribosomal subunit interface protein [Clostridium sp. Maddingley
MBC34-26]
gi|410596238|gb|EKQ50920.1| ribosomal subunit interface protein [Clostridium sp. Maddingley
MBC34-26]
Length = 177
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 108/201 (53%), Gaps = 31/201 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + KN+ELTD +K V++KV K + K+ + E LSV+ R ++
Sbjct: 1 MKVTVIAKNMELTDALKEIVQKKVSK-LEKYFEVEVEAKATLSVQKN---------RHKI 50
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMK--GFNRLKV 214
+ +GVV R EE +Y S+DLV ++R++RK K + S H +K N +++
Sbjct: 51 EVMIPFNGVVLRGEEATSDMYKSLDLVEDKLERQIRKQKTRLSRKHSGSLKFGEINNIEI 110
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
P EEE N +VR+K F + P+ EAI Q++ + H+F+ +++
Sbjct: 111 NSP-------------EEEHGN----LVRVKKFGVKPMNSEEAILQMDLLGHNFFVYQDA 153
Query: 275 ETGEINIVYKRKAGGYGVIIP 295
++ ++N+VYKRK G YG++ P
Sbjct: 154 DSNKVNVVYKRKDGDYGLLEP 174
>gi|357420014|ref|YP_004933006.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermovirga
lienii DSM 17291]
gi|355397480|gb|AER66909.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermovirga
lienii DSM 17291]
Length = 182
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 108/192 (56%), Gaps = 19/192 (9%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
K++EL D +K ++E K+ K R +DV++ V +F +G + E+T +
Sbjct: 8 KHVELQDEMKEYMERKLSKL---EKFFDRILDVQVEV---DFTRGMYV--VEIT--ADVN 57
Query: 166 GVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
GV+ R EE A+ + + D I+R+++K H +K R+K E +T +
Sbjct: 58 GVIMRGEEYAQDIRKAFDKGLKNIERQVKK-------HKEFLKDKARMKSHEELTFEIGE 110
Query: 225 DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYK 284
+ S E +++F D +V++K F + P+T EA Q++ + H+FY F+N E G IN++Y+
Sbjct: 111 FINEVSGEAEESFND-VVKVKRFPLRPMTAKEASMQMDLLGHNFYVFKNAENGGINVIYR 169
Query: 285 RKAGGYGVIIPK 296
RK GG+G+++P+
Sbjct: 170 RKNGGFGLLVPE 181
>gi|402310859|ref|ZP_10829818.1| ribosomal subunit interface protein [Eubacterium sp. AS15]
gi|400366788|gb|EJP19812.1| ribosomal subunit interface protein [Eubacterium sp. AS15]
Length = 173
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 25/195 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +I+ GK + L+ K VE K+ + + +V+VR++ K I EV
Sbjct: 1 MNIILSGKQISLSPKQKATVETKLSRL---EKYFNEDVNVRVT---ASRRKDDSI--VEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ V+RAE +Y ++D V S + ++LRK K K + G F +
Sbjct: 53 TIPVNKN-VIRAEATDSDLYCAVDEVVSKLSKQLRKFKTKLKNRGTETIRFENI------ 105
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+D+ +++ +E I R K FE P++ EAI QLE V HDF+ F N +T
Sbjct: 106 -----DDSSIENSKES-----LISRRKKFEFTPMSEEEAILQLELVGHDFFVFVNSDTDM 155
Query: 279 INIVYKRKAGGYGVI 293
IN++YKRK G YG+I
Sbjct: 156 INVIYKRKDGDYGII 170
>gi|340355248|ref|ZP_08677940.1| ribosomal subunit interface protein [Sporosarcina newyorkensis
2681]
gi|339622688|gb|EGQ27203.1| ribosomal subunit interface protein [Sporosarcina newyorkensis
2681]
Length = 186
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 105/194 (54%), Gaps = 19/194 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
I+G+N+E+T ++ +VE+K+ K + ++ V++++ + + EVT
Sbjct: 6 IRGENVEVTPAIREYVEKKIQKLERYFTEGANATAHVNLKVY--------NDKQTKVEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ K+ +RAEE +YA++DL+ ++R++RK K + + R +G
Sbjct: 58 I-PMKNLTLRAEERHSDMYAAVDLIVDKLERQIRKYKTRVNRKSREREGV------AAFF 110
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
Q VE+ + Q +DD + +VR K F++ P+ EAI Q+ + H+F+ F + E+
Sbjct: 111 QSVEDSNNTQESLDDDQDFN-VVRTKQFDLKPMDQEEAILQMNMLGHNFFIFTDAESDGT 169
Query: 280 NIVYKRKAGGYGVI 293
NIVYKRK G YG+I
Sbjct: 170 NIVYKRKDGRYGLI 183
>gi|227494986|ref|ZP_03925302.1| ribosome-associated inhibitor protein Y [Actinomyces coleocanis DSM
15436]
gi|226831438|gb|EEH63821.1| ribosome-associated inhibitor protein Y [Actinomyces coleocanis DSM
15436]
Length = 220
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 113/216 (52%), Gaps = 27/216 (12%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----I 153
++ + I G+N E+ + +VEEKV K + R +DV L+ + PR
Sbjct: 4 TMDITIVGRNAEIHPNFRAYVEEKVAKVTQLYPRAQR-IDVELT-----HERNPRQAETA 57
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-------- 205
R E+T+F K ++RAE + +A++D+ + +LR+ +++ DH R
Sbjct: 58 ERIELTVFGKG-PIIRAEASSSDRHAAVDIAVGKLFERLRRARDRAKDHRRRYDTPIAVD 116
Query: 206 MKGF--NRLKVRE-PVT--QVVENDADVQ-SEEEDDNFVDE--IVRMKFFEMPPLTVSEA 257
+ G + ++V E PVT + + + AD++ E ++ F D IVR K E P+TV +A
Sbjct: 117 LGGIVPDEVEVEEAPVTAEESLRSAADLKPGEVREEQFGDSPVIVRQKLHEAEPMTVDQA 176
Query: 258 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ Q+E V H F+ F + ETG+ +VY R+ YGVI
Sbjct: 177 LYQMELVGHPFFLFVDVETGQPCVVYHREGWTYGVI 212
>gi|282882948|ref|ZP_06291553.1| ribosome-associated factor Y [Peptoniphilus lacrimalis 315-B]
gi|281297359|gb|EFA89850.1| ribosome-associated factor Y [Peptoniphilus lacrimalis 315-B]
Length = 176
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 31/193 (16%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
GKN++L D +KN ++K K + EV R F K ++ EVT+F
Sbjct: 7 GKNIDLKDGLKNQAQKKFSKL---DKYFAEEVQAR-----AVFSKQKNGQKVEVTIFLP- 57
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
++RAEE ++ ++ SID ++R++RK K RLK R + +
Sbjct: 58 GTILRAEETSQDMFVSIDKTVDKLERQVRKYK-------------TRLKKRYQNNETIRF 104
Query: 225 D----ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
D VQ EE+ D I + K F + P+ EAI Q+E ++H+F+ F+N E +I
Sbjct: 105 DNFDKEPVQKEEDKD-----IKKRKTFTLRPMHEDEAILQMELLNHNFFIFKNAENDKIE 159
Query: 281 IVYKRKAGGYGVI 293
+ YKR G YG+I
Sbjct: 160 VSYKRSDGDYGII 172
>gi|320547866|ref|ZP_08042149.1| ribosomal subunit interface protein [Streptococcus equinus ATCC
9812]
gi|320447406|gb|EFW88166.1| ribosomal subunit interface protein [Streptococcus equinus ATCC
9812]
Length = 182
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 113/198 (57%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE K+GK + K+ + +E+D R++++ + + EV
Sbjct: 2 IKYSVRGENIEVTDAIRSYVESKLGK-IKKYFNAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K + R + P
Sbjct: 57 TILVDS-ITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIARKHRE---------KLPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ + ++ + + EE +VR K + P+ + EA+ Q++ + HDF+ + + E GE
Sbjct: 107 SHIFTSEFEAEETEESPAV--NVVRTKHVSLKPMDLDEALLQMDLLGHDFFIYTDAEDGE 164
Query: 279 INIVYKRKAGGYGVIIPK 296
NI+Y+R+ G G+I K
Sbjct: 165 TNILYRREDGELGLIEAK 182
>gi|347549814|ref|YP_004856142.1| hypothetical protein LIV_2421 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982885|emb|CBW86919.1| Conserved hypothetical protein like to B. subtilis YvyD protein
[Listeria ivanovii subsp. ivanovii PAM 55]
Length = 187
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 16/197 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE+K+ K + D + V + + + EV
Sbjct: 2 LKYNIRGENIEVTEPIRDYVEKKIDKL---ERYFTETPDANVHVNLKVYSD--KNAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +YASIDL+ ++R++RK K K + R KG R
Sbjct: 57 TI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-KGAER------- 107
Query: 219 TQVVENDADVQSEEEDD--NFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+D + + ED+ +F EIVR K F + P+ EA+ Q+ + H FY + + ET
Sbjct: 108 DYFAYSDVNGSAPPEDNEGDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAET 167
Query: 277 GEINIVYKRKAGGYGVI 293
NIVY RK G YG+I
Sbjct: 168 NGTNIVYSRKDGKYGLI 184
>gi|342217783|ref|ZP_08710421.1| ribosomal subunit interface protein [Megasphaera sp. UPII 135-E]
gi|341592770|gb|EGS35630.1| ribosomal subunit interface protein [Megasphaera sp. UPII 135-E]
Length = 174
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 102/196 (52%), Gaps = 27/196 (13%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+I++GKNLE+T +K +V K K +LK+ + LS+ K +I E+TL
Sbjct: 3 MIVRGKNLEITPALKEYVL-KNEKKLLKYFDNEVQSQTMLSIE-----KERKI--AEITL 54
Query: 161 FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ GVV R+ E E +YASIDL + R++ K K + R MK E V
Sbjct: 55 --RIDGVVLRSIEANEDMYASIDLAYDKLVRQIHKYKTR---LARRMK--------ESVF 101
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
+ V+ EE+ EI R+K F P+ EAI Q+ V HDF+ F N ET +I
Sbjct: 102 HASLIEGKVEPEEKF-----EIARVKKFAARPMDTEEAILQMNLVGHDFFVFLNAETDKI 156
Query: 280 NIVYKRKAGGYGVIIP 295
N+VYKRK G YG+I P
Sbjct: 157 NVVYKRKHGKYGLIEP 172
>gi|386317537|ref|YP_006013701.1| sigma-54 modulation protein / S30EA ribosomal protein
[Streptococcus dysgalactiae subsp. equisimilis ATCC
12394]
gi|408402141|ref|YP_006860105.1| ribosome-associated factor Y [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410495470|ref|YP_006905316.1| Ribosome-associated factor Y [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|323127824|gb|ADX25121.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus dysgalactiae subsp. equisimilis ATCC
12394]
gi|407968370|dbj|BAM61608.1| ribosome-associated factor Y [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410440630|emb|CCI63258.1| Ribosome-associated factor Y [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 182
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 111/195 (56%), Gaps = 17/195 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+DVR++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDVRVNLKVYR----EKSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
QV + ++E+ D+ ++VR K + P+ V EA Q+E + HDF+ + + E GE
Sbjct: 107 GQVF--TTEFEAEQVDETPEVKVVRTKNLTLKPMDVEEARLQMELLGHDFFIYTDAEDGE 164
Query: 279 INIVYKRKAGGYGVI 293
NI+Y+R+ G G+I
Sbjct: 165 TNILYRREDGDLGLI 179
>gi|306821519|ref|ZP_07455120.1| ribosomal subunit interface protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304550445|gb|EFM38435.1| ribosomal subunit interface protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 173
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 25/195 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +I+ GK + L+ K VE K+ + + +V+VR++ K I EV
Sbjct: 1 MNIILSGKQISLSPKQKATVETKLSRL---EKYFNEDVNVRVT---ASRRKDDSI--VEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ V+RAE +Y ++D V S + ++LRK K K + G F +
Sbjct: 53 TIPVNKN-VIRAEATDSDLYCAVDEVVSKLSKQLRKFKTKLKNRGTETIRFENI------ 105
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+D+ +++ +E I R K FE P++ EAI QLE V HDF+ F N +T
Sbjct: 106 -----DDSSIENPKES-----LISRRKKFEFTPMSEEEAILQLELVGHDFFVFVNSDTDM 155
Query: 279 INIVYKRKAGGYGVI 293
IN++YKRK G YG+I
Sbjct: 156 INVIYKRKDGDYGII 170
>gi|317050781|ref|YP_004111897.1| ribosomal subunit interface protein [Desulfurispirillum indicum S5]
gi|316945865|gb|ADU65341.1| ribosomal subunit interface protein [Desulfurispirillum indicum S5]
Length = 186
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 108/202 (53%), Gaps = 27/202 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I GK ++LT+ +K + EEK+GK + ++ V + + SV ++ EV L
Sbjct: 5 ITGKQIDLTEPLKQYAEEKIGK-LSRYFDTVMDAHIVFSVNKHR-------QKVEVNLLV 56
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+G+ + AE + +YASID V+ I+R++++ K K H K R+ +
Sbjct: 57 --NGINISAESTTQDMYASIDTVTDKIERQVKRYKNKIKSH----------KPRQQAKDM 104
Query: 222 VEN------DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
V N ++ + EE+ ++++ F++ P++V EA+ Q+ + ++F FRN +
Sbjct: 105 VVNMNVFAAESFEEREEQAGGSEPKVIKSSSFKVKPMSVDEAVMQMNLISNEFLVFRNAD 164
Query: 276 TGEINIVYKRKAGGYGVIIPKG 297
+ +IN++Y+RK G YG++ P+
Sbjct: 165 SDQINVIYQRKDGNYGLVQPEA 186
>gi|187777239|ref|ZP_02993712.1| hypothetical protein CLOSPO_00786 [Clostridium sporogenes ATCC
15579]
gi|187774167|gb|EDU37969.1| ribosomal subunit interface protein [Clostridium sporogenes ATCC
15579]
Length = 175
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + GKN+E+T+ ++ VE+K+ K + V LSV + + EV
Sbjct: 1 MKITVIGKNIEITNALRETVEKKLSKLERFFNPDVV-ATATLSVHKNK-------QTIEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HGV+ R EE E +YASID+V ++R++RK K K + G R +
Sbjct: 53 TI--PFHGVILRGEETTEDMYASIDMVIDKLERQIRKQKTKLQRNIH--DGSLRFQY--- 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ E +N +IV+ K F M P++ EA+ Q+E + H+F+ ++N +T
Sbjct: 106 ----------IPDYESGENKETQIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNADTE 155
Query: 278 EINIVYKRKAGGYGVIIPK 296
E+N++Y+RK G YG+I P+
Sbjct: 156 EVNVIYRRKDGNYGLIEPE 174
>gi|314933060|ref|ZP_07840426.1| ribosomal subunit interface protein [Staphylococcus caprae C87]
gi|313654379|gb|EFS18135.1| ribosomal subunit interface protein [Staphylococcus caprae C87]
Length = 191
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 103/198 (52%), Gaps = 15/198 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL---VREVDVRLSVRGGEFGKGPRIRR 155
++ I G NL +TD ++N++E+K+GK +++ V V V+ +
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGKLERYFNNVPNAVAHVKVKTYSNSAT--------K 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ K +RAEE + +YA IDL++ ++R++RK K + + R +G + V
Sbjct: 54 IEVTI-PLKDVTLRAEERHDDLYAGIDLITGKLERQVRKYKTRVNRKHRD-RGDQEVFVA 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
E E + + D + EI+R K F + P+ EA+ Q+ + HDF+ F + E
Sbjct: 112 EVQEASPEEVSGAEEPVSDSDI--EIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRE 169
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVY+RK G YG+I
Sbjct: 170 TDGTSIVYRRKDGKYGLI 187
>gi|56808645|ref|ZP_00366371.1| COG1544: Ribosome-associated protein Y (PSrp-1) [Streptococcus
pyogenes M49 591]
Length = 182
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 110/198 (55%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ R + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFAKDQEIDARVNLKVYR----ERSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
QV + ++EE D+ ++VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 GQVF--TTEFEAEEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSENGA 164
Query: 279 INIVYKRKAGGYGVIIPK 296
NI+Y+R+ G G+I K
Sbjct: 165 TNILYRREDGNLGLIEAK 182
>gi|303235315|ref|ZP_07321933.1| ribosomal subunit interface protein [Finegoldia magna BVS033A4]
gi|417925480|ref|ZP_12568899.1| ribosomal subunit interface protein [Finegoldia magna
SY403409CC001050417]
gi|302493629|gb|EFL53417.1| ribosomal subunit interface protein [Finegoldia magna BVS033A4]
gi|341591106|gb|EGS34314.1| ribosomal subunit interface protein [Finegoldia magna
SY403409CC001050417]
Length = 179
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL K+++LTD +K E K+ K + K+ H ++ V F K R EV
Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHK-LDKYFHDEQQARVV-------FKKEKDKARVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E + +ID V + R++RK ++ K+++
Sbjct: 53 TMILDKGVVLRAEESNEDIKTAIDKVEDALARQVRK---------------HKTKLQKRF 97
Query: 219 TQVVENDADVQSEEEDDNFVDEI-----VRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
T+ ++ E ++N EI V+ K F + P+ EAI Q+E +DHDF+ F +
Sbjct: 98 TE----SNSIRFEAVEENSAKEIPTGSIVKTKEFGIKPMDKEEAIMQMELIDHDFFVFLD 153
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
+T +N+VYKRK G YG+++P
Sbjct: 154 SKTNNVNVVYKRKDGNYGLLVP 175
>gi|15616170|ref|NP_244475.1| ribosomal protein S30AE familyprotein [Bacillus halodurans C-125]
gi|10176232|dbj|BAB07327.1| ribosomal protein S30AE family [Bacillus halodurans C-125]
Length = 187
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 105/197 (53%), Gaps = 17/197 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+NLE+T ++ +VE+KVGK V +V+VR+ V + EVT+
Sbjct: 5 VRGENLEVTPALREYVEKKVGKLERYFDTTPVADVNVRMQVLNN-------LHIIEVTIP 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL--KVREPVT 219
+ ++RAEE +YA+IDLV ++R++RK K K + R + EP+
Sbjct: 58 MSRL-LLRAEEKHSDMYAAIDLVIEKLERQIRKHKTKVNRKFRQEGSLKYMFKNDLEPM- 115
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
D + ++ ++VR K F + P+ EAI Q++ + H+F+ F N +G+
Sbjct: 116 -----DGMREEILLEEEDDLQVVRKKRFNLKPMDTEEAILQMDMLGHNFFVFSNAISGDT 170
Query: 280 NIVYKRKAGGYGVIIPK 296
N+VY+RK G YG+I P+
Sbjct: 171 NVVYRRKDGKYGLIEPE 187
>gi|184154808|ref|YP_001843148.1| ribosomal subunit interface protein [Lactobacillus fermentum IFO
3956]
gi|227514373|ref|ZP_03944422.1| ribosome-associated inhibitor protein Y [Lactobacillus fermentum
ATCC 14931]
gi|260663164|ref|ZP_05864056.1| ribosomal subunit interface protein [Lactobacillus fermentum
28-3-CHN]
gi|183226152|dbj|BAG26668.1| ribosomal subunit interface protein [Lactobacillus fermentum IFO
3956]
gi|227087239|gb|EEI22551.1| ribosome-associated inhibitor protein Y [Lactobacillus fermentum
ATCC 14931]
gi|260552356|gb|EEX25407.1| ribosomal subunit interface protein [Lactobacillus fermentum
28-3-CHN]
Length = 181
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 106/202 (52%), Gaps = 32/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-------VLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+E+TD ++++V +++ K V ++H V L V
Sbjct: 2 LKFNIRGENVEVTDAIRDYVVKRISKLERFLEPNVEANAH------VNLKVYSN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y S+DLV+ ++R++RK K K + R KG+
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KGYKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
L+ D SEE + + +IVR K + P+ EA+ Q++ + HDF+ +
Sbjct: 108 LEF-----------VDTPSEEVEASDSLKIVRTKQIPLKPMDSEEAVLQMDMLGHDFFVY 156
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
++ ET +IVY+R G YG+I
Sbjct: 157 QDAETNGTSIVYRRNDGRYGLI 178
>gi|374601532|ref|ZP_09674532.1| ribosome-associated factor y [Paenibacillus dendritiformis C454]
gi|374392867|gb|EHQ64189.1| ribosome-associated factor y [Paenibacillus dendritiformis C454]
Length = 180
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 110/195 (56%), Gaps = 26/195 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+++E+TD + ++VE+K+G+ + +V+V LSV + EVT+
Sbjct: 5 VRGQHIEVTDALLDYVEKKLGRLERYFEAPPKSDVNVTLSVIRDQHT-------VEVTI- 56
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
++RAE+ ++ +YASID V+ ++R++RK K K NR K R+ T+
Sbjct: 57 PLPGLLLRAEDRSKDMYASIDSVTDKLERQIRKHKTK----------VNR-KFRQTGTEA 105
Query: 222 -VENDAD--VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ +DA V +EED E+VR K F + P+ V EAI Q+ + H F+ F N ET E
Sbjct: 106 HLFSDAATPVPVDEEDQL---EVVRTKRFTLKPMDVEEAILQMNMIGHSFFVFSNAETKE 162
Query: 279 INIVYKRKAGGYGVI 293
+N+VY+R G YG+I
Sbjct: 163 VNVVYRRNDGRYGLI 177
>gi|375091089|ref|ZP_09737390.1| ribosomal subunit interface protein [Helcococcus kunzii ATCC 51366]
gi|374564451|gb|EHR35744.1| ribosomal subunit interface protein [Helcococcus kunzii ATCC 51366]
Length = 177
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 100/191 (52%), Gaps = 25/191 (13%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
GKN+ + D K VE+K+GK + + ++D + + F + EVT++ KK
Sbjct: 7 GKNINIRDNFKEDVEKKLGKL---NKYFDEDIDAKAT-----FSVDGNFKTVEVTIWLKK 58
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV--TQVV 222
++R+EE + + +S+D V + R++RK K K K E + +
Sbjct: 59 GTILRSEETTDDMLSSVDRVVESLDRQMRKYKTK----------LQTRKTGESIRYEAIP 108
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
++ +Q +EE IV++K + P+ V +AI Q++ +DHDF+ +++ ET +++V
Sbjct: 109 TDNLTIQEDEEP-----TIVKVKKIGLKPMFVEDAIMQMDLLDHDFFVYQDAETELVSVV 163
Query: 283 YKRKAGGYGVI 293
Y+R G YG+I
Sbjct: 164 YRRTDGNYGII 174
>gi|170781106|ref|YP_001709438.1| hypothetical protein CMS_0672 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155674|emb|CAQ00794.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 235
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 17/206 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+N E+TD + + EK K +++ + +D+++S + G R E+TL
Sbjct: 11 ITGRNAEITDRFRVYATEKADK-IVQLAEKSISLDIKVSRHSEKSGGSAGDDRVEITLVG 69
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRH---------MKGFNRL 212
V+RAE A +A+ DL + +LR+ K+K+ H G H GF ++
Sbjct: 70 PGP-VIRAESSAADKFAAFDLALGRMLERLRRAKDKKKIHRGNHRPLSLHEAATDGFAQI 128
Query: 213 KVREPVTQVVE-----NDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHD 267
+ +++E + A V +D++ ++R K F +TV +A+E +E V HD
Sbjct: 129 DLDPADAELIERVNGKSVAPVDQPVAEDDYCPVVIRTKVFPSQSMTVDQALEHMELVGHD 188
Query: 268 FYGFRNEETGEINIVYKRKAGGYGVI 293
F+ F + ET ++VY+RK YGVI
Sbjct: 189 FFLFIDAETDRPSVVYRRKGWDYGVI 214
>gi|289423900|ref|ZP_06425693.1| SSU ribosomal protein S30P [Peptostreptococcus anaerobius 653-L]
gi|289155677|gb|EFD04349.1| SSU ribosomal protein S30P [Peptostreptococcus anaerobius 653-L]
Length = 183
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 110/195 (56%), Gaps = 15/195 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+++ GK + LT+ + ++++K K L + ++R++V + K ++ EV
Sbjct: 1 MKILVTGKKIRLTEGINGYIDKKFSKL---EKLLSEDTELRVTVSANKKEK----QKVEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
TL +VRAE+ E +Y++ID+V + R++ K K K G + ++ E
Sbjct: 54 TLDNINGHIVRAEDVQEDLYSAIDVVCDKLNRQIVKYKHKFKSRA---SGNDTIRF-ENF 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
Q++E + +++ ED V E R K F++ P++ EA+ Q+ + HDF+ F++++T E
Sbjct: 110 NQLLEEE--IEAVPEDSELVFE--RRKKFDIRPMSPEEAVLQMNLLGHDFFLFKDQDTFE 165
Query: 279 INIVYKRKAGGYGVI 293
+ +VY+R GGYG+I
Sbjct: 166 VCLVYRRGDGGYGLI 180
>gi|15672625|ref|NP_266799.1| hypothetical protein L32389 [Lactococcus lactis subsp. lactis
Il1403]
gi|281491119|ref|YP_003353099.1| ribosome-associated factor Y [Lactococcus lactis subsp. lactis
KF147]
gi|385830136|ref|YP_005867949.1| ribosome-associated factor Y [Lactococcus lactis subsp. lactis
CV56]
gi|418036955|ref|ZP_12675346.1| hypothetical protein LLCRE1631_00153 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|12723547|gb|AAK04741.1|AE006297_4 hypothetical protein L32389 [Lactococcus lactis subsp. lactis
Il1403]
gi|281374869|gb|ADA64388.1| Ribosome-associated factor Y [Lactococcus lactis subsp. lactis
KF147]
gi|326406144|gb|ADZ63215.1| ribosome-associated factor Y [Lactococcus lactis subsp. lactis
CV56]
gi|354695100|gb|EHE94722.1| hypothetical protein LLCRE1631_00153 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|374672635|dbj|BAL50526.1| hypothetical protein lilo_0525 [Lactococcus lactis subsp. lactis
IO-1]
Length = 185
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 28/202 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK--AVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+N+E+TD ++ +VE+K+GK H V V L V + K
Sbjct: 2 IKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAY-VNLKVYSEKRAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM----KGF-NR 211
EVTL K+ +RAE+ ++ +Y+SID V ++R++RK K + + R+ + F +
Sbjct: 55 EVTL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAVPTGQAFGDE 113
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
E +V E+ D IVR K + P+ EA+ Q++ + HDFY F
Sbjct: 114 FAPLEKADEVAEDHVD-------------IVRTKHVALKPMDAEEAVLQMDMLGHDFYVF 160
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
+ ++ ++VY+R G YG+I
Sbjct: 161 TDADSNGTHVVYRRTDGRYGLI 182
>gi|256396691|ref|YP_003118255.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Catenulispora acidiphila DSM 44928]
gi|256362917|gb|ACU76414.1| sigma 54 modulation protein/ribosomal protein S30EA [Catenulispora
acidiphila DSM 44928]
Length = 237
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 112/219 (51%), Gaps = 33/219 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD---VRLSVRGGEFGKGPRI-- 153
+ ++++ ++ E+TD + HV EK+ K V E+D + L+V GE K PR
Sbjct: 1 MDIVVKSRHHEVTDRFRRHVVEKLAK--------VEEMDGKAISLTVVLGE-EKNPRQSE 51
Query: 154 --RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R E+TL + V+RAE A Y+++DL ++ +Q +LR++K++ H +
Sbjct: 52 QKDRIELTLDCPRSPVIRAEACAGDPYSALDLAAAKLQAQLRRVKDRRKIHRNRKAIADS 111
Query: 212 LKVREPVTQVVENDADVQSEEE---DDNFVD--------------EIVRMKFFEMPPLTV 254
+K P+ + A + + + D+ VD +VR K P+T+
Sbjct: 112 IKHLPPMADLPPGTAPLLTSDGAAGDNPEVDLPAYGVPGQAGEGPMVVREKTHAAAPMTL 171
Query: 255 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+A+ ++E V HDFY + ++++G +VY+R+A YGVI
Sbjct: 172 DQALYEMELVGHDFYLYVDKDSGLPAVVYRRRAYDYGVI 210
>gi|167628824|ref|YP_001679323.1| sigma 54 modulation protein/ribosomal protein s30ae [Heliobacterium
modesticaldum Ice1]
gi|167591564|gb|ABZ83312.1| sigma 54 modulation protein/ribosomal protein s30ae [Heliobacterium
modesticaldum Ice1]
Length = 174
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 102/194 (52%), Gaps = 26/194 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T+ +K +V +++ K + K+ H + L+V G + + EVT+
Sbjct: 5 VRGKNIEVTNALKEYVVKRLSK-LEKYFHNIGGARTTLAVEGD-------MAKVEVTV-P 55
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
++RAEE +YA+IDLV +++++ K K S R +KG
Sbjct: 56 AGDLLLRAEESHPDMYAAIDLVFEKLEKQVDAYKTKLS---RRLKG-------------- 98
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ + + E++ +VR K F + P+ V EAI Q+ + H F+ F N ET ++N+V
Sbjct: 99 QGFKEFAAAEKNGATEPRVVRSKRFALKPMPVDEAIMQMNLIGHSFFVFSNAETEQVNVV 158
Query: 283 YKRKAGGYGVIIPK 296
Y RK G YG+I P+
Sbjct: 159 YLRKDGNYGLIEPE 172
>gi|259046382|ref|ZP_05736783.1| ribosomal subunit interface protein [Granulicatella adiacens ATCC
49175]
gi|259036927|gb|EEW38182.1| ribosomal subunit interface protein [Granulicatella adiacens ATCC
49175]
Length = 186
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 102/192 (53%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD-VRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T+ ++ + E+K+ K + + V L V + K EVT+
Sbjct: 12 IRGENIEVTEAIRQYAEKKISKLEKYFTDVANATAYVNLKVYTEKTAK------VEVTI- 64
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +Y SIDLV ++R++RK K K + R KGF+ +
Sbjct: 65 PLPYLVLRAEETSIDLYGSIDLVVDKLERQVRKHKTKINRKSRE-KGFD----------I 113
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
V EEE+ EIVR K ++ P+ EA+ Q+ + H+F+ +++ ET E NI
Sbjct: 114 VLPTLPEAPEEEETGL--EIVRTKRIDLKPMDSEEAVLQMNMLGHNFFIYQDAETNETNI 171
Query: 282 VYKRKAGGYGVI 293
VY+RK G YG+I
Sbjct: 172 VYRRKDGKYGLI 183
>gi|423565935|ref|ZP_17542210.1| ribosomal subunit interface protein [Bacillus cereus MSX-A1]
gi|401193068|gb|EJR00076.1| ribosomal subunit interface protein [Bacillus cereus MSX-A1]
Length = 180
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ F ++RAEE +YA+IDLV I+R++RK K K + R KG + P
Sbjct: 53 TIPFI--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSMKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V ++ + E VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 110 EAVAVMDEVEEDELEL--------VRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADTN 161
Query: 278 EINIVYKRKAGGYGVI 293
E N+VY RK G YG+I
Sbjct: 162 ETNVVYGRKDGKYGLI 177
>gi|34763431|ref|ZP_00144379.1| PROBABLE SIGMA(54) MODULATION PROTEIN; SSU ribosomal protein S30P
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
gi|237741496|ref|ZP_04571977.1| sigma(54) modulation protein [Fusobacterium sp. 4_1_13]
gi|256844831|ref|ZP_05550289.1| ribosome-associated protein Y [Fusobacterium sp. 3_1_36A2]
gi|294785888|ref|ZP_06751176.1| sigma(54) modulation protein [Fusobacterium sp. 3_1_27]
gi|421144372|ref|ZP_15604286.1| sigma(54) modulation protein [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|27886900|gb|EAA24024.1| PROBABLE SIGMA(54) MODULATION PROTEIN; SSU ribosomal protein S30P
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
gi|229429144|gb|EEO39356.1| sigma(54) modulation protein [Fusobacterium sp. 4_1_13]
gi|256718390|gb|EEU31945.1| ribosome-associated protein Y [Fusobacterium sp. 3_1_36A2]
gi|294487602|gb|EFG34964.1| sigma(54) modulation protein [Fusobacterium sp. 3_1_27]
gi|395489166|gb|EJG10007.1| sigma(54) modulation protein [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 181
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATESDLYASIDKAVDIMESLLKKHKEKRS----------RAKVQDDT 105
Query: 219 -TQVVENDADVQSEEEDDNFVDE--IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+ D V++ E+ F DE +VR+ + + P+ +SEAI QLE ++ F+ F N E
Sbjct: 106 RKKSYSFDYIVEAGEK---FSDEKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNSE 161
Query: 276 TGEINIVYKRKAGGYGVI 293
TG++ +VYKRK G YGVI
Sbjct: 162 TGKMAVVYKRKDGDYGVI 179
>gi|373855711|ref|ZP_09598457.1| ribosomal subunit interface protein [Bacillus sp. 1NLA3E]
gi|372454780|gb|EHP28245.1| ribosomal subunit interface protein [Bacillus sp. 1NLA3E]
Length = 183
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 25/196 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE K+ K + D ++V + + EVT+
Sbjct: 5 IRGENIEVTPAIREYVERKIAKL---ERYFTETPDAHVNVNLRVYNDKKS--KVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP----- 217
V+RAEE E +YA+IDL+ ++R++RK H NR K RE
Sbjct: 59 MTQLVLRAEETNEDMYAAIDLIVDKLERQIRK----------HKTKVNR-KFREKGSLTS 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ VVE+ + +EE + E+VR K F++ P+ EAI Q+ + H FY F N
Sbjct: 108 MFTVVEDSSLPVVDEEHEL---ELVRTKRFDLKPMDSEEAILQMNMLGHSFYVFTNSANH 164
Query: 278 EINIVYKRKAGGYGVI 293
N+VYKRK G YG+I
Sbjct: 165 NTNVVYKRKDGRYGLI 180
>gi|306826957|ref|ZP_07460257.1| ribosomal subunit interface protein [Streptococcus pyogenes ATCC
10782]
gi|304430975|gb|EFM33984.1| ribosomal subunit interface protein [Streptococcus pyogenes ATCC
10782]
Length = 182
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 110/198 (55%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ R + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFAKDQEIDTRVNLKVYR----ERSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
QV + ++EE D+ ++VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 GQVFT--TEFEAEEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGA 164
Query: 279 INIVYKRKAGGYGVIIPK 296
NI+Y+R+ G G+I K
Sbjct: 165 TNILYRREDGNLGLIEAK 182
>gi|15675492|ref|NP_269666.1| hypothetical protein SPy_1613 [Streptococcus pyogenes SF370]
gi|19746540|ref|NP_607676.1| hypothetical protein spyM18_1623 [Streptococcus pyogenes MGAS8232]
gi|21910894|ref|NP_665162.1| ribosomal subunit interface protein [Streptococcus pyogenes
MGAS315]
gi|28895415|ref|NP_801765.1| hypothetical protein SPs0503 [Streptococcus pyogenes SSI-1]
gi|50914717|ref|YP_060689.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS10394]
gi|71904028|ref|YP_280831.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS6180]
gi|71911138|ref|YP_282688.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS5005]
gi|94988950|ref|YP_597051.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS9429]
gi|94992843|ref|YP_600942.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS2096]
gi|94994830|ref|YP_602928.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS10750]
gi|139473337|ref|YP_001128052.1| sigma-54 modulation protein / S30EA ribosomal protein
[Streptococcus pyogenes str. Manfredo]
gi|383480350|ref|YP_005389244.1| ribosomal associated protein [Streptococcus pyogenes MGAS15252]
gi|383494332|ref|YP_005412008.1| ribosomal associated protein [Streptococcus pyogenes MGAS1882]
gi|386363170|ref|YP_006072501.1| ribosomal subunit interface protein [Streptococcus pyogenes Alab49]
gi|410680988|ref|YP_006933390.1| Ribosomal subunit interface protein [Streptococcus pyogenes A20]
gi|417856496|ref|ZP_12501555.1| ribosomal subunit interface protein [Streptococcus pyogenes HKU
QMH11M0907901]
gi|421892424|ref|ZP_16323084.1| Ribosomal subunit interface protein [Streptococcus pyogenes NS88.2]
gi|81371745|sp|Q5XAQ7.1|RAFY_STRP6 RecName: Full=Ribosome-associated factor Y
gi|13622688|gb|AAK34387.1| conserved protein - function unknown [Streptococcus pyogenes M1
GAS]
gi|19748751|gb|AAL98175.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|21905100|gb|AAM79965.1| putative ribosomal subunit interface protein [Streptococcus
pyogenes MGAS315]
gi|28810661|dbj|BAC63598.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|50903791|gb|AAT87506.1| Ribosome-associated factor Y [Streptococcus pyogenes MGAS10394]
gi|71803123|gb|AAX72476.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS6180]
gi|71853920|gb|AAZ51943.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS5005]
gi|94542458|gb|ABF32507.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS9429]
gi|94544458|gb|ABF34506.1| Ribosome-associated factor Y [Streptococcus pyogenes MGAS10270]
gi|94546351|gb|ABF36398.1| Ribosome-associated factor Y [Streptococcus pyogenes MGAS2096]
gi|94548338|gb|ABF38384.1| Ribosome-associated factor Y [Streptococcus pyogenes MGAS10750]
gi|134271583|emb|CAM29808.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pyogenes str. Manfredo]
gi|350277579|gb|AEQ24947.1| ribosomal subunit interface protein [Streptococcus pyogenes Alab49]
gi|378928340|gb|AFC66546.1| ribosomal associated protein [Streptococcus pyogenes MGAS15252]
gi|378930059|gb|AFC68476.1| ribosomal associated protein [Streptococcus pyogenes MGAS1882]
gi|379981822|emb|CCG26806.1| Ribosomal subunit interface protein [Streptococcus pyogenes NS88.2]
gi|387933451|gb|EIK41564.1| ribosomal subunit interface protein [Streptococcus pyogenes HKU
QMH11M0907901]
gi|409693577|gb|AFV38437.1| Ribosomal subunit interface protein [Streptococcus pyogenes A20]
Length = 182
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 110/198 (55%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ R + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFAKDQEIDARVNLKVYR----ERSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
QV + ++EE D+ ++VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 GQVFT--TEFEAEEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGA 164
Query: 279 INIVYKRKAGGYGVIIPK 296
NI+Y+R+ G G+I K
Sbjct: 165 TNILYRREDGNLGLIEAK 182
>gi|398813972|ref|ZP_10572658.1| ribosomal subunit interface protein [Brevibacillus sp. BC25]
gi|398037383|gb|EJL30575.1| ribosomal subunit interface protein [Brevibacillus sp. BC25]
Length = 187
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 113/202 (55%), Gaps = 19/202 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--EVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+N+++T ++ +VE+KVG+ + K+ + EV V + V GE
Sbjct: 1 MKFNIRGENIQVTAALREYVEKKVGR-LEKYFETPQPTEVQVTMHVHRGEGT-------I 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ ++RAEE E +YA+IDLV ++R++RK K K R + R+ RE
Sbjct: 53 EVTI-PLSGVIIRAEETHEDMYAAIDLVVEKLERQIRKHKTKLMRKLR-VDSTGRIAQRE 110
Query: 217 --PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
PV ++ + + + + D VR K F++ P+ EA+ Q++ + H F+ F+N
Sbjct: 111 SQPVAVMIPDVDEDDIDIDIDI-----VRTKRFDLKPMDAQEAVMQMDMLGHSFFVFQNS 165
Query: 275 ETGEINIVYKRKAGGYGVIIPK 296
+T ++++VY+R G YG+I PK
Sbjct: 166 DTNDVSVVYRRNDGRYGLIEPK 187
>gi|365156910|ref|ZP_09353197.1| ribosomal subunit interface protein [Bacillus smithii 7_3_47FAA]
gi|363626377|gb|EHL77367.1| ribosomal subunit interface protein [Bacillus smithii 7_3_47FAA]
Length = 182
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 110/193 (56%), Gaps = 20/193 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ + E+K+G+ + ++ + + +V ++++ ++ + EVT+
Sbjct: 5 IRGENIEVTPAIREYAEKKIGR-LERYFNETPDANVHVNLKV----YPDKMAKVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP--VTQ 220
+ V+RAEE + +YA+IDL+ ++R++RK H NR K+RE +
Sbjct: 59 LPNLVLRAEERNQDMYAAIDLIVDKLERQIRK----------HKTKVNR-KLREQGSTKE 107
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+ + QS E++N + IVR K F + P+ EAI Q+ + H+F+ + + ET N
Sbjct: 108 LFTVNESGQSNAEEENDIT-IVRTKQFSLKPMDSEEAILQMNLLGHNFFIYTDAETNATN 166
Query: 281 IVYKRKAGGYGVI 293
IVY+RK G YG+I
Sbjct: 167 IVYRRKDGKYGLI 179
>gi|322386967|ref|ZP_08060591.1| ribosomal subunit interface protein [Streptococcus cristatus ATCC
51100]
gi|417922214|ref|ZP_12565703.1| ribosomal subunit interface protein [Streptococcus cristatus ATCC
51100]
gi|321269249|gb|EFX52185.1| ribosomal subunit interface protein [Streptococcus cristatus ATCC
51100]
gi|342833102|gb|EGU67390.1| ribosomal subunit interface protein [Streptococcus cristatus ATCC
51100]
Length = 180
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 107/195 (54%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 LKYSIRGENLEVTDALRDYVVSKLEK-IEKYFQAEQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K R N++ +
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVIDKIERQIRKNKTKIEKKNR-----NKVATSQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T + DAD S + +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 111 TDALVEDADAASSK--------VVRSKHIDLKPMDLDEAILQMDLLGHDFFIYTDVEDST 162
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 163 TNVIYRREDGDIGLL 177
>gi|347525095|ref|YP_004831843.1| ribosome-associated factor Y [Lactobacillus ruminis ATCC 27782]
gi|345284054|gb|AEN77907.1| Ribosome-associated factor Y [Lactobacillus ruminis ATCC 27782]
Length = 186
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 10/129 (7%)
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
+ V+RAEE + +YASIDLV+ ++R++RK K K + R KGF + V
Sbjct: 62 YLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKLNRKSRE-KGFKTF-------EFVPT 113
Query: 225 DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYK 284
++ ED F EIVR K + P+ EAI Q++ + HDF+ + + ET I+IVY+
Sbjct: 114 SDPKEAAAEDKKF--EIVRTKSVSLKPMDAEEAILQMDMLGHDFFIYEDAETSGIDIVYR 171
Query: 285 RKAGGYGVI 293
R+ G YG+I
Sbjct: 172 RRDGRYGLI 180
>gi|239616947|ref|YP_002940269.1| sigma 54 modulation protein/ribosomal protein S30EA [Kosmotoga
olearia TBF 19.5.1]
gi|239505778|gb|ACR79265.1| sigma 54 modulation protein/ribosomal protein S30EA [Kosmotoga
olearia TBF 19.5.1]
Length = 178
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 103/197 (52%), Gaps = 25/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K I K++ +TDT+K H+++K+ K + H +DVR+ G + +
Sbjct: 1 MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFT-SMDVRVMKERGLY-------KV 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
E+T VVR EE + Y ++ +++ ++R++++ KE+ R++ R
Sbjct: 53 EITGHLPGF-VVRVEERGDDFYGVVEAIANTLERRIKRYKER-----------ARMRHRA 100
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+++E +V EEE +I R K F + P+ + EA+ Q+E + H F+ FRN +T
Sbjct: 101 SAKEILEAIPEVPDEEERGL---QITRTKRFSIKPMKIDEALLQMEMLGHTFFVFRNVDT 157
Query: 277 GEINIVYKRKAGGYGVI 293
E+N++Y RK G G+I
Sbjct: 158 DEVNVLYLRKNGTVGLI 174
>gi|397632968|gb|EJK70774.1| hypothetical protein THAOC_07839 [Thalassiosira oceanica]
Length = 139
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 71/112 (63%), Gaps = 7/112 (6%)
Query: 190 RKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDE----IVRMK 245
RKLRK KE+ D G H G N + V +E + DV +E+D FVD I ++K
Sbjct: 29 RKLRKYKERRLD-GYH-GGPNMGENLADVLNSIEVEDDVAVPQEEDAFVDPEQAVITKVK 86
Query: 246 FFEM-PPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
F++ P+++ EAI L+ +DHDFY FR+EE+ ++++VYKR AGG G+I P+
Sbjct: 87 SFDLSKPISIKEAIFALDYIDHDFYVFRDEESNDVSVVYKRNAGGVGLIQPE 138
>gi|406659586|ref|ZP_11067724.1| ribosomal subunit interface protein [Streptococcus iniae 9117]
gi|405577695|gb|EKB51843.1| ribosomal subunit interface protein [Streptococcus iniae 9117]
Length = 182
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 109/200 (54%), Gaps = 21/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLAK-IEKYFVEENEIDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TILLG-NMTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KLPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEI--VRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
QV + + E E+D EI VR K + P+ V EA Q+E + HDF+ + + +
Sbjct: 107 GQVFTS----EFEAEEDEVAPEIKIVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSDN 162
Query: 277 GEINIVYKRKAGGYGVIIPK 296
G NI+Y+R+ G G+I K
Sbjct: 163 GATNILYRREDGDLGLIEAK 182
>gi|145593528|ref|YP_001157825.1| ribosomal subunit interface protein [Salinispora tropica CNB-440]
gi|145302865|gb|ABP53447.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Salinispora tropica CNB-440]
Length = 208
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 23/211 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV EK+ K + ++ H + VDV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHFRVHVAEKLAK-IERYDHKIIRVDVELF-----HERNPRQADHCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDL-VSSIIQRKLRKIKEKESDHGRHMK-GFNRL 212
R E+T ++ V+RAE Y+++D ++ + R R + HGRH
Sbjct: 55 RVEITCVSRG-PVMRAEAGTSDFYSALDAAIARLDARMRRAADRRRVHHGRHAPISVAAA 113
Query: 213 KVREPVTQVVEN----------DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLE 262
PVT +V ++EEE D+ I R K P+T+ +A+ Q+E
Sbjct: 114 TAGLPVTDLVAGPLSADAATATAVAERAEEEHDDQPWHIAREKVHPAEPMTIDDALFQME 173
Query: 263 NVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
V HDFY F+++E+G ++VY+R A YG+I
Sbjct: 174 LVGHDFYLFQDKESGRPSVVYRRHAYDYGII 204
>gi|429204739|ref|ZP_19196022.1| Ribosome-associated factor Y [Lactobacillus saerimneri 30a]
gi|428146962|gb|EKW99195.1| Ribosome-associated factor Y [Lactobacillus saerimneri 30a]
Length = 183
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 106/199 (53%), Gaps = 27/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K ++G+N+E+T ++ +VE+K+ K S+ V++++ + +
Sbjct: 2 LKYNVRGENIEVTSALREYVEKKISKLEKFFEDTSNSTAHVNMKVY--------SDKNAK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK-V 214
EVT+ + V+RAEE + +YAS+DLV+ ++R++RK K K + R KGF L V
Sbjct: 54 VEVTI-PLPYLVLRAEETSPDMYASVDLVTDKLERQIRKYKTKVNRKSRE-KGFKNLDFV 111
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+V E D IVR K + P+ EAI Q++ + HDF+ +++
Sbjct: 112 PSETEEVPEKSFD-------------IVRTKQVSIKPMDSEEAILQMDMLGHDFFIYQDA 158
Query: 275 ETGEINIVYKRKAGGYGVI 293
E+ INIVY+R+ G YG+I
Sbjct: 159 ESDGINIVYRRRDGRYGLI 177
>gi|406935804|gb|EKD69677.1| hypothetical protein ACD_47C00038G0001, partial [uncultured
bacterium]
Length = 174
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 92/179 (51%), Gaps = 11/179 (6%)
Query: 117 HVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 176
+V EK K H++ E+DV LSV + K R + EVT++ V+RA E +
Sbjct: 5 YVREKFSKLTNYFEHII-EIDVTLSVEQTK-NKEDR-QTVEVTIWANG-AVLRACESSFD 60
Query: 177 VYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDN 236
+YAS+DLV I+R++ K KEK D R R RE V+ SE+ D
Sbjct: 61 MYASVDLVLDKIERQIIKYKEKLKDIPRRTAHHKR--EREATHTVLS-----LSEKTSDA 113
Query: 237 FVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIP 295
+I+R K F + P+ EA QL+ + DF F N +T E+N+VY+R G G+I P
Sbjct: 114 SEPKIIRTKKFALKPMFADEAAMQLDLLGQDFVVFSNAQTSEVNVVYRRNDGNIGLIEP 172
>gi|223042827|ref|ZP_03612875.1| ribosomal subunit interface protein [Staphylococcus capitis SK14]
gi|417905703|ref|ZP_12549502.1| ribosomal subunit interface protein [Staphylococcus capitis VCU116]
gi|222443681|gb|EEE49778.1| ribosomal subunit interface protein [Staphylococcus capitis SK14]
gi|341598597|gb|EGS41097.1| ribosomal subunit interface protein [Staphylococcus capitis VCU116]
Length = 191
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 15/198 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL---VREVDVRLSVRGGEFGKGPRIRR 155
++ I G NL +TD ++N++E+K+GK +++ V V V+ +
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGKLERYFNNVPNAVAHVKVKTYSNSAT--------K 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ K +RAEE + +YA IDL++ ++R++RK K + + R +G + V
Sbjct: 54 IEVTI-PLKDVTLRAEERHDDLYAGIDLITGKLERQVRKYKTRVNRKHRD-RGDQEVFVA 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
E V + + E D+ + EI+R K F + P+ EA+ Q+ + HDF+ F + E
Sbjct: 112 E-VQEASPGEVSGAEESVSDSEI-EIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRE 169
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVY RK G YG+I
Sbjct: 170 TDGTSIVYTRKDGKYGLI 187
>gi|366053904|ref|ZP_09451626.1| ribosomal subunit interface protein [Lactobacillus suebicus KCTC
3549]
Length = 184
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 19/196 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+TD+++ +V +++ K + V + L V + K E
Sbjct: 2 LKFNIRGENIEVTDSIREYVTKRISKLEKYFENSVEATAHINLKVYSNKDAK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + +RAEE + +Y+S DLV+ ++R++RK K K + R KG+ L
Sbjct: 56 VTI-PLPYLTLRAEETSSDMYSSADLVTDKLERQIRKYKTKINRKSRE-KGYKNL----- 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ ND +SEE + + +IVR K + P+ EAI Q++ + HDF+ F + ET
Sbjct: 109 --EFTPND---RSEETNKDEELKIVRTKQVSLKPMDNEEAILQMDMLGHDFFVFEDAETN 163
Query: 278 EINIVYKRKAGGYGVI 293
+IVY+R G YG+I
Sbjct: 164 GTSIVYRRNDGRYGLI 179
>gi|226314895|ref|YP_002774791.1| hypothetical protein BBR47_53100 [Brevibacillus brevis NBRC 100599]
gi|226097845|dbj|BAH46287.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 185
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 112/202 (55%), Gaps = 21/202 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--EVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+N+++T ++ +VE+KVG+ + K+ + EV V + V GE
Sbjct: 1 MKFNIRGENIQVTAALREYVEKKVGR-LEKYFETPQPTEVQVTMHVHRGEGT-------I 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ ++RAEE E +YA+IDLV ++R++RK K K R + R+ RE
Sbjct: 53 EVTI-PLSGVIIRAEETHEDMYAAIDLVVEKLERQIRKHKTKLMRKLR-VDSTGRIAQRE 110
Query: 217 --PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
PV ++ + + + + VR K F++ P+ EA+ Q++ + H F+ F+N
Sbjct: 111 SQPVAVMIPDVDEEDIDIDI-------VRTKRFDLKPMDAQEAVMQMDMLGHSFFVFQNS 163
Query: 275 ETGEINIVYKRKAGGYGVIIPK 296
+T ++++VY+R G YG+I PK
Sbjct: 164 DTNDVSVVYRRNDGRYGLIEPK 185
>gi|425733662|ref|ZP_18851982.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Brevibacterium casei S18]
gi|425482102|gb|EKU49259.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Brevibacterium casei S18]
Length = 224
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 23/214 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI-RRCE 157
+ +++ G+ L ++D+ + H+E+K+ K R V + V + + P R E
Sbjct: 1 MDIVVTGRQLTISDSFRAHIEDKIAKV---EQLAPRAQRVEVHVAHDKNTRQPETSERVE 57
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE--KESDHGRHMK-----GFN 210
+T+ K V+RAE A YA++DL + + +LR+ ++ K S G H K
Sbjct: 58 LTVVAKG-PVIRAEAMASDKYAALDLAWAKLVERLRRARDRNKVSRAGHHRKESTAEALA 116
Query: 211 RLKVREPV------TQVVENDADVQSEEEDDNFVDE-----IVRMKFFEMPPLTVSEAIE 259
++ V +P+ T+ E DA + + E ++R K F P+ + EA+
Sbjct: 117 KMPVADPIVPTDGGTESAETDAAAGPDRTNGRIKAEGDSPVVLREKSFAAAPIGIEEALN 176
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
++E V HDFY F +E + + ++VY+RK YGVI
Sbjct: 177 RMELVGHDFYLFIDEASQKPSVVYRRKGWSYGVI 210
>gi|336323245|ref|YP_004603212.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Flexistipes sinusarabici DSM 4947]
gi|336106826|gb|AEI14644.1| sigma 54 modulation protein/ribosomal protein S30EA [Flexistipes
sinusarabici DSM 4947]
Length = 177
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I KN++LTD ++++V +K+GK V K+ V EV V L V+ + EV L
Sbjct: 5 ITAKNIDLTDAIRSYVNKKIGK-VKKYFDQVIEVHVVLEVQKN-------LHIAEV-LVN 55
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFN---RLKVREPVT 219
K ++ E +E +YASIDL I+R+L K KEK K F +L V E +
Sbjct: 56 AKGVFLKGLEKSEDLYASIDLAVDKIERQLVKYKEKIQSKKLMNKDFEEPFKLNVIETGS 115
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
+N V S++ + P+ V EA+ Q++ ++ +F+ FRN ++ E+
Sbjct: 116 LDTDNPVTVISKQ--------------IPVKPMDVEEAVMQMDLLNKNFFVFRNADSSEV 161
Query: 280 NIVYKRKAGGYGVIIP 295
N+VYKR G G+I P
Sbjct: 162 NVVYKRDDGNIGLIEP 177
>gi|332798800|ref|YP_004460299.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Tepidanaerobacter acetatoxydans Re1]
gi|438001826|ref|YP_007271569.1| Ribosomal subunit interface protein [Tepidanaerobacter
acetatoxydans Re1]
gi|332696535|gb|AEE90992.1| sigma 54 modulation protein/ribosomal protein S30EA
[Tepidanaerobacter acetatoxydans Re1]
gi|432178620|emb|CCP25593.1| Ribosomal subunit interface protein [Tepidanaerobacter
acetatoxydans Re1]
Length = 175
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 25/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I GKN +T +K++ E+K+GK V E V LSV K I EV
Sbjct: 1 MKLNISGKNFTVTKALKDYAEKKLGKLERFFDSEV-EAQVTLSVE-----KNRHI--VEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R E + +Y+SID V +++++ K K K + + +++
Sbjct: 53 TMPINGM-LLRGETETYDMYSSIDAVVDKLEKQIEKYKTKTARN-----------IKKKS 100
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
N +E E IVR+K F + P+ + EA+ Q++ + HDF+ F N ET E
Sbjct: 101 FDYSGNGKKASNENEP-----RIVRIKKFALKPMDLEEAVMQMDLLGHDFFVFSNAETDE 155
Query: 279 INIVYKRKAGGYGVIIP 295
+N+VYKR+ G YG+I P
Sbjct: 156 VNVVYKRRDGNYGLIEP 172
>gi|375089824|ref|ZP_09736149.1| ribosomal subunit interface protein [Facklamia languida CCUG 37842]
gi|374566671|gb|EHR37910.1| ribosomal subunit interface protein [Facklamia languida CCUG 37842]
Length = 190
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 16/193 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD-VRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T ++ + E++V K + + V L V + K EVT+
Sbjct: 6 VRGENIEVTQAIREYAEKRVSKLEKYFTDVPNATAYVNLKVYPDKTAK------AEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
V+RAEE +YASID V ++R++RK K K + R KGF E + +
Sbjct: 59 PLSFLVLRAEETTPDLYASIDFVVDKLERQVRKYKTKINRKSRE-KGF------EGINEA 111
Query: 222 VENDADVQSEEEDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+ D E++D D +IVR K + P+ EA+ Q+ + HDF+ F++ E+ EI+
Sbjct: 112 IGPDKVEVKEDQDTQESDLKIVRSKHIHLKPMDSEEAVLQMNMLGHDFFVFKDAESDEIH 171
Query: 281 IVYKRKAGGYGVI 293
IVY+RK G YG+I
Sbjct: 172 IVYRRKDGRYGLI 184
>gi|352517920|ref|YP_004887237.1| putative ribosome-associated protein [Tetragenococcus halophilus
NBRC 12172]
gi|348602027|dbj|BAK95073.1| putative ribosome-associated protein [Tetragenococcus halophilus
NBRC 12172]
Length = 184
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 108/193 (55%), Gaps = 19/193 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++++VE+KVGK + ++ + V E ++++ + + EVT+
Sbjct: 6 VRGENIEVTQAIRDYVEKKVGK-LERYFNDVPEATAHVNLKV----YTEKTAKAEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +Y SIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYGSIDLVVDKLERQVRKFKTK----------INR-KKREASKPEA 108
Query: 223 ENDADVQSEE-EDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+ + EE E++N D +IVR K + P+ EA+ Q+ + H+F+ F + +T +
Sbjct: 109 NQEVFFEDEEPEENNGSDLDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDADTTGTS 168
Query: 281 IVYKRKAGGYGVI 293
IVY+RK G YG+I
Sbjct: 169 IVYRRKDGKYGLI 181
>gi|237745102|ref|ZP_04575583.1| sigma(54) modulation protein [Fusobacterium sp. 7_1]
gi|260494876|ref|ZP_05815006.1| sigma(54) modulation protein [Fusobacterium sp. 3_1_33]
gi|289764715|ref|ZP_06524093.1| sigma(54) modulation protein [Fusobacterium sp. D11]
gi|336419293|ref|ZP_08599558.1| putative sigma(54) modulation protein [Fusobacterium sp. 11_3_2]
gi|423138422|ref|ZP_17126065.1| ribosomal subunit interface protein [Fusobacterium nucleatum subsp.
animalis F0419]
gi|229432331|gb|EEO42543.1| sigma(54) modulation protein [Fusobacterium sp. 7_1]
gi|260198038|gb|EEW95555.1| sigma(54) modulation protein [Fusobacterium sp. 3_1_33]
gi|289716270|gb|EFD80282.1| sigma(54) modulation protein [Fusobacterium sp. D11]
gi|336163804|gb|EGN66719.1| putative sigma(54) modulation protein [Fusobacterium sp. 11_3_2]
gi|371957787|gb|EHO75530.1| ribosomal subunit interface protein [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 181
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 18/196 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ L+K KEK S R K+++
Sbjct: 57 LAYLS-GSTLKATATESDLYASIDKAVDIMESLLKKHKEKRS----------RAKIQDDT 105
Query: 219 -TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ D V+ EE+ N ++VR+ + + P+ +SEAI QLE ++ F+ F N ETG
Sbjct: 106 RKRSYSFDYIVEPEEKLSN-EKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNSETG 163
Query: 278 EINIVYKRKAGGYGVI 293
+ +VYKRK G YGVI
Sbjct: 164 NMAVVYKRKDGDYGVI 179
>gi|451817485|ref|YP_007453686.1| ribosomal subunit interface protein [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451783464|gb|AGF54432.1| ribosomal subunit interface protein [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 177
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 110/202 (54%), Gaps = 33/202 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRC 156
+K+ + KN+ELTD +K V++K+ K + VD + LSV+ +
Sbjct: 1 MKVTVIAKNMELTDALKEIVQKKISKL---EKYFDSNVDAKATLSVQKSR-------HKI 50
Query: 157 EVTL-FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMKGFNRLK 213
EVT+ F +GV+ R EE +Y S+DLV ++R++RK K + S HG ++ F L
Sbjct: 51 EVTIPF---NGVILRGEESTSDMYKSLDLVEDKLERQIRKQKTRLSRKHGGSLR-FGELG 106
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
E D +EEE ++V++K F + P+ EAI Q++ + H+F+ + +
Sbjct: 107 SVE----------DNTAEEEHG----KLVKVKKFGIKPMNSEEAILQMDLIGHNFFVYED 152
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
++G++N++YKRK G YG++ P
Sbjct: 153 ADSGKVNVIYKRKDGDYGLLEP 174
>gi|342732929|ref|YP_004771768.1| ribosomal subunit interface protein [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384456297|ref|YP_005668894.1| 30S ribosomal protein S30 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417962234|ref|ZP_12604486.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-2]
gi|417964132|ref|ZP_12605903.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-3]
gi|417964942|ref|ZP_12606575.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-4]
gi|417966274|ref|ZP_12607667.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-5]
gi|417969363|ref|ZP_12610304.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-co]
gi|418015663|ref|ZP_12655228.1| ribosomal subunit interface protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373180|ref|ZP_12965271.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330384|dbj|BAK57026.1| ribosomal subunit interface protein [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345505998|gb|EGX28292.1| ribosomal subunit interface protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984642|dbj|BAK80318.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380330421|gb|EIA21696.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-3]
gi|380330770|gb|EIA21945.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-2]
gi|380338026|gb|EIA26979.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-co]
gi|380339443|gb|EIA28180.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-4]
gi|380341569|gb|EIA30043.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|380343214|gb|EIA31619.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-5]
Length = 177
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 111/198 (56%), Gaps = 28/198 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--VRLSVRGGEFGKGPRIRRC 156
+K++I GKN+E+T +++ + +K+ K ++ +E++ V LSV K +I
Sbjct: 1 MKIVIHGKNIEVTRALEDAINKKLSKL---DNYFSQELEAHVTLSVE-----KNNQIIEV 52
Query: 157 EVTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
+ LF +G+ +RA+E +Y +IDLV + +++R+ K K +K ++ +R
Sbjct: 53 GI-LF---NGIYLRAQERNSDLYIAIDLVVDKLYKQIRRQKTK------LVKKYSNKDIR 102
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
D + + E DD D I+++K F + P+ EAI Q+E + HDFY F N E
Sbjct: 103 SL-------DILLDNIENDDLEDDIIIKVKKFPIKPMYKDEAILQMELIGHDFYVFINAE 155
Query: 276 TGEINIVYKRKAGGYGVI 293
T ++N++Y+RK+G YG+I
Sbjct: 156 TNDVNVLYRRKSGNYGLI 173
>gi|312868555|ref|ZP_07728752.1| ribosomal subunit interface protein [Lactobacillus oris PB013-T2-3]
gi|311095926|gb|EFQ54173.1| ribosomal subunit interface protein [Lactobacillus oris PB013-T2-3]
Length = 179
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 34/202 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+E+TD + ++V +++ K +V +H V L V
Sbjct: 2 LKFNIRGENVEVTDAIWDYVVKRISKLQKFFEDSVEATAH------VNLKVYPN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y S+DLV+ ++R++RK K K + R KG
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
L + V +D D S+E +IVR K + P+ EA+ Q++ + HDF+ F
Sbjct: 108 L-------EFVPSDDDSVSDEL------KIVRTKQVSLKPMDPEEAVLQMDMLGHDFFVF 154
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
++ ET +IVY+R+ G YG+I
Sbjct: 155 QDAETNGTSIVYRRRDGRYGLI 176
>gi|359410415|ref|ZP_09202880.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
sp. DL-VIII]
gi|357169299|gb|EHI97473.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
sp. DL-VIII]
Length = 177
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 110/199 (55%), Gaps = 27/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ + KN+ELTD ++ V++K+ K S V E LSV+ R ++
Sbjct: 1 MRVTVIAKNMELTDALREIVQKKISKLEKYFSGNV-EAKATLSVQKN---------RHKI 50
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMKGFNRLKVRE 216
+ +GV+ R EE +Y S+DLV ++R++RK K + S H +K F +
Sbjct: 51 EVMIPFNGVILRGEEATSDMYKSLDLVEDKLERQIRKQKTRLSRKHSESLK-FAEI---- 105
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
N+ D+++EEE+ ++V++K F + P+ EAI Q++ + H+F+ +++ ++
Sbjct: 106 -------NNIDIKAEEEEHG---KLVKVKKFGVKPMNSEEAILQMDLLGHNFFVYQDADS 155
Query: 277 GEINIVYKRKAGGYGVIIP 295
++N+VYKRK G YG++ P
Sbjct: 156 SKVNVVYKRKDGDYGLLEP 174
>gi|433447239|ref|ZP_20410872.1| ribosome-associated protein [Anoxybacillus flavithermus TNO-09.006]
gi|432000073|gb|ELK20979.1| ribosome-associated protein [Anoxybacillus flavithermus TNO-09.006]
Length = 182
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 105/199 (52%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE---VDVRLSVRGGEFGKGPRIRR 155
+K I+G+N+E+T ++ +VE+K+GK L+ E V V L V + K
Sbjct: 1 MKYNIRGENIEVTQAIREYVEKKIGK--LERYFESTEGITVYVNLKVYNDKQAK------ 52
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR-LKV 214
EVT+ V+RAEE + +YA+IDLV ++R++RK H NR ++
Sbjct: 53 IEVTI-PMPQIVLRAEERHDDMYAAIDLVVDKLERQIRK----------HKTKVNRKMRE 101
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+E + A V + E ++ EIVR K F + P+ EAI Q+ + H+FY F N
Sbjct: 102 KEANGVTLTTTAPVATGEHEEE-EFEIVRTKRFSLKPMDSEEAILQMNMLGHNFYVFINA 160
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET N+VYKRK G YG+I
Sbjct: 161 ETNRTNVVYKRKDGKYGLI 179
>gi|251783075|ref|YP_002997378.1| ribosome-associated factor Y [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|417928290|ref|ZP_12571678.1| ribosomal subunit interface protein [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
gi|242391705|dbj|BAH82164.1| ribosome-associated factor Y [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|340766164|gb|EGR88690.1| ribosomal subunit interface protein [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
Length = 182
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 111/198 (56%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDARVNLKVYR----EKSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
QV + ++E+ D+ ++VR K + P+ V EA Q+E + HDF+ + + E GE
Sbjct: 107 GQVF--TTEFEAEQVDETPEVKVVRTKNLTLKPMDVEEARLQMELLGHDFFIYTDAEDGE 164
Query: 279 INIVYKRKAGGYGVIIPK 296
NI+Y+R+ G G+I K
Sbjct: 165 TNILYRREDGDLGLIEAK 182
>gi|288554126|ref|YP_003426061.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
pseudofirmus OF4]
gi|288545286|gb|ADC49169.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
pseudofirmus OF4]
Length = 185
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 106/198 (53%), Gaps = 20/198 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T ++++VE+KVGK V +V+VR+ V + E+T+
Sbjct: 5 IRGENIEVTPALRDYVEKKVGKLERYFDTTPVADVNVRMQVLNNQ-------HIIEITI- 56
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL--KVREPVT 219
++R EE +YA+ID V ++R++RK K K + R + EP+
Sbjct: 57 PMPQLLLRGEETHTDMYAAIDNVIEKLERQIRKHKTKVNRKFRQEGSLKYMFKNELEPLE 116
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
Q +V+ +E++ E+VR K F + P+ EAI Q++ + H+F+ F N G+
Sbjct: 117 Q-----EEVEPDEDEI----EVVRKKRFNLKPMDAEEAILQMDMLGHNFFVFSNAVNGDT 167
Query: 280 NIVYKRKAGGYGVIIPKG 297
++VY+RK G YG+I P+
Sbjct: 168 SVVYRRKDGKYGLIEPEA 185
>gi|194468148|ref|ZP_03074134.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
reuteri 100-23]
gi|423336078|ref|ZP_17313829.1| ribosomal subunit interface protein [Lactobacillus reuteri ATCC
53608]
gi|194453001|gb|EDX41899.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
reuteri 100-23]
gi|337729281|emb|CCC04408.1| ribosomal subunit interface protein [Lactobacillus reuteri ATCC
53608]
Length = 182
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 110/202 (54%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+E+T++++++V +++ K +V +H V L V
Sbjct: 2 LKFNIRGENVEVTESIRDYVVKRISKLQKFFEDSVEATAH------VNLKVYPN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y SIDLV+ ++R++RK K K + R KG
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSIDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
L + + +D D ++E+DD +IVR K + P+ EA+ Q++ + H+F+ F
Sbjct: 108 L-------EFISSDND-GADEQDDEL--KIVRTKQVSLKPMDPEEAVLQMDMLGHNFFIF 157
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
++ ET +IVY+R G YG+I
Sbjct: 158 QDAETNGTSIVYRRNDGRYGLI 179
>gi|443673700|ref|ZP_21138755.1| S30AE family protein [Rhodococcus sp. AW25M09]
gi|443413702|emb|CCQ17093.1| S30AE family protein [Rhodococcus sp. AW25M09]
Length = 222
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 39/217 (17%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGK------------AVLKHSHLVREVDVRLSVRG 144
++ ++++G+N+E+ D + +V EK+ + L+H R+ V
Sbjct: 22 TNADVVVKGRNVEIPDHFRVYVSEKLARLERFDPSIYLFDVELQHERNRRQAKACQRVEI 81
Query: 145 GEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR 204
GKGP VVRAE A++ YA+++ V+S ++ +LR+ K++ H
Sbjct: 82 TAKGKGP---------------VVRAEACADSFYAALEAVTSKLENRLRRTKDRRKVH-- 124
Query: 205 HMKGFNR-LKVREPVTQVVENDA-------DVQSEEEDDNFVDEIVRMKFFEMPPLTVSE 256
G R + V E ++ E+D ++S ++D + IVR K P++V +
Sbjct: 125 --YGEKRPVSVAEATAELAEDDTLALDPETKLESFDDDQSGPGHIVRTKIHSAAPMSVDD 182
Query: 257 AIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
A+ ++E V HDF+ F + T ++VY+R A YG+I
Sbjct: 183 ALYEMELVGHDFFLFHDSATDRPSVVYRRHAFDYGLI 219
>gi|395239464|ref|ZP_10417343.1| Ribosome-associated inhibitor protein Y [Lactobacillus gigeriorum
CRBIP 24.85]
gi|394476371|emb|CCI87320.1| Ribosome-associated inhibitor protein Y [Lactobacillus gigeriorum
CRBIP 24.85]
Length = 181
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 23/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+TD ++++V++++ K + K+ L ++V V L V K
Sbjct: 2 LKYNVRGENIEVTDALRSYVDKRL-KKLEKYFELSQDVIAHVNLKVYRDHSAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V
Sbjct: 55 EVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVET 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
P +EEE +IVR K + P+ EAI Q++ + HDF+ F++ ET
Sbjct: 113 P------------AEEEKKTGEFDIVRNKRVSLKPMEPEEAILQMDMLGHDFFVFQDAET 160
Query: 277 GEINIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 161 NGTSVVYRRNDGRYGLI 177
>gi|383807036|ref|ZP_09962597.1| hypothetical protein IMCC13023_05590 [Candidatus Aquiluna sp.
IMCC13023]
gi|383299466|gb|EIC92080.1| hypothetical protein IMCC13023_05590 [Candidatus Aquiluna sp.
IMCC13023]
Length = 202
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 16/205 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L I KNL ++D +++V EK GK V + +H +E++++++ G G + E+
Sbjct: 1 MELRISAKNLTVSDRFRDYVTEKAGK-VEQFAHRPQELNIKITRYEHSKGAGQE-DQVEL 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG------RHMKGFNRL 212
T++ H VVRAE A +A+ D+ + + +LR+ +K+ H F L
Sbjct: 59 TVYEPGH-VVRAEARASDKFAAFDIAFAKLLERLRRYSDKQKKHQGLGASELTASDFRDL 117
Query: 213 KVREPVTQVVENDADV----QSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
+ +Q++ + V Q EE + V +R K FE +T EA+ +E V HDF
Sbjct: 118 AIVPADSQLLTGEIPVLKQEQPEEPEGQLV---IRSKEFEKNAMTKEEAVSHMELVGHDF 174
Query: 269 YGFRNEETGEINIVYKRKAGGYGVI 293
Y + + E + +VY+RKA YGVI
Sbjct: 175 YLYHDLEHDKAAVVYRRKAYSYGVI 199
>gi|392329720|ref|ZP_10274336.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus canis FSL Z3-227]
gi|391419592|gb|EIQ82403.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus canis FSL Z3-227]
Length = 182
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 110/195 (56%), Gaps = 17/195 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDARINLKVYR----EKSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KIPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
QV + ++E+ D+ ++VR K + P+ V EA Q+E + HDF+ + + E GE
Sbjct: 107 GQVF--TTEFEAEQVDETPEVKVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDAEDGE 164
Query: 279 INIVYKRKAGGYGVI 293
NI+Y+R+ G G+I
Sbjct: 165 TNILYRREDGNLGLI 179
>gi|148378176|ref|YP_001252717.1| ribosomal subunit interface protein [Clostridium botulinum A str.
ATCC 3502]
gi|153933462|ref|YP_001382576.1| ribosomal subunit interface protein [Clostridium botulinum A str.
ATCC 19397]
gi|153936354|ref|YP_001386129.1| ribosomal subunit interface protein [Clostridium botulinum A str.
Hall]
gi|153938529|ref|YP_001389535.1| ribosomal subunit interface protein [Clostridium botulinum F str.
Langeland]
gi|168182219|ref|ZP_02616883.1| ribosomal subunit interface protein [Clostridium botulinum Bf]
gi|170755531|ref|YP_001779799.1| ribosomal subunit interface protein [Clostridium botulinum B1 str.
Okra]
gi|170761554|ref|YP_001785500.1| ribosomal subunit interface protein [Clostridium botulinum A3 str.
Loch Maree]
gi|237793490|ref|YP_002861042.1| ribosomal subunit interface protein [Clostridium botulinum Ba4 str.
657]
gi|384460616|ref|YP_005673211.1| ribosomal subunit interface protein [Clostridium botulinum F str.
230613]
gi|387816399|ref|YP_005676743.1| ribosomal subunit interface protein [Clostridium botulinum H04402
065]
gi|429243943|ref|ZP_19207425.1| ribosomal subunit interface protein [Clostridium botulinum
CFSAN001628]
gi|148287660|emb|CAL81725.1| putative sigma 54 modulation protein/S30EA ribosomal protein
[Clostridium botulinum A str. ATCC 3502]
gi|152929506|gb|ABS35006.1| ribosomal subunit interface protein [Clostridium botulinum A str.
ATCC 19397]
gi|152932268|gb|ABS37767.1| ribosomal subunit interface protein [Clostridium botulinum A str.
Hall]
gi|152934425|gb|ABS39923.1| ribosomal subunit interface protein [Clostridium botulinum F str.
Langeland]
gi|169120743|gb|ACA44579.1| ribosomal subunit interface protein [Clostridium botulinum B1 str.
Okra]
gi|169408543|gb|ACA56954.1| ribosomal subunit interface protein [Clostridium botulinum A3 str.
Loch Maree]
gi|182674506|gb|EDT86467.1| ribosomal subunit interface protein [Clostridium botulinum Bf]
gi|229262083|gb|ACQ53116.1| ribosomal subunit interface protein [Clostridium botulinum Ba4 str.
657]
gi|295317633|gb|ADF98010.1| ribosomal subunit interface protein [Clostridium botulinum F str.
230613]
gi|322804440|emb|CBZ01990.1| ribosomal subunit interface protein [Clostridium botulinum H04402
065]
gi|428758863|gb|EKX81254.1| ribosomal subunit interface protein [Clostridium botulinum
CFSAN001628]
Length = 175
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 30/201 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + GKN+E+T+ ++ VE+K+ K + V LSV + + EV
Sbjct: 1 MKITVIGKNIEITNALRETVEKKLSKLERFFNPDVV-ATATLSVHKNK-------QTIEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
T+ HGV+ R EE E +YASID+V ++ ++RK K K H ++ F +
Sbjct: 53 TI--PFHGVILRGEETTEDMYASIDMVIDKLEGQVRKQKTKLQRKIHDGSLR-FQYI--- 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
D +SEE + +IV+ K F M P++ EA+ Q+E + H+F+ ++N +
Sbjct: 107 ----------PDYESEENKET---QIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNAD 153
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
T E+N++Y+RK G YG+I P+
Sbjct: 154 TEEVNVIYRRKDGNYGLIEPE 174
>gi|452973510|gb|EME73332.1| hypothetical protein BSONL12_16449 [Bacillus sonorensis L12]
Length = 186
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 21/197 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ HVE+K+GK + +VD + V + + EVT+
Sbjct: 5 VRGENIEVTAALREHVEKKIGKL---GRYFENDVDAIVQVNLKFYNDQES--KVEVTIPM 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PVT 219
+ RAE E +Y +IDL ++ ++R++RK K K NR K RE P
Sbjct: 60 IDLSL-RAEVHHEDMYNAIDLAATKLERQIRKHKTK----------VNR-KFREKGSPKH 107
Query: 220 QVVE-NDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
E N +EE D ++VR K F + P+ EAI Q+ + HDF+ F N ET
Sbjct: 108 LFAEGNGIGTAVQEETDEEQPQVVRQKRFNLKPMDNEEAILQMNMLGHDFFVFTNAETNL 167
Query: 279 INIVYKRKAGGYGVIIP 295
N+VY+R G YG+I P
Sbjct: 168 TNVVYRRNDGKYGLIEP 184
>gi|417067162|ref|ZP_11949911.1| ribosomal subunit interface protein [Lactobacillus rhamnosus MTCC
5462]
gi|328466530|gb|EGF37672.1| ribosomal subunit interface protein [Lactobacillus rhamnosus MTCC
5462]
Length = 165
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 75/126 (59%), Gaps = 9/126 (7%)
Query: 168 VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDAD 227
+RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ + A+
Sbjct: 45 LRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDIDSNAP------AE 97
Query: 228 VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKA 287
+ E+DDN ++VR K + P+ EAI Q++ + H+F+ F + +T +IVYKR+
Sbjct: 98 PKPAEDDDNL--KVVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDADTNGTSIVYKRRD 155
Query: 288 GGYGVI 293
G YG+I
Sbjct: 156 GRYGLI 161
>gi|241889111|ref|ZP_04776415.1| ribosome-associated factor Y [Gemella haemolysans ATCC 10379]
gi|241864360|gb|EER68738.1| ribosome-associated factor Y [Gemella haemolysans ATCC 10379]
Length = 181
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 107/192 (55%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+NLE+T ++ +VE KV K + K+ E +V + + + K ++ E+T+
Sbjct: 6 VRGENLEITQAIREYVENKVSK-LEKYFADSLEANVYANAKVYKNNK----KKIEITVPL 60
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ GV +RAEE E +YA++DLV ++R++RK K K + GR KGF
Sbjct: 61 R--GVTLRAEETNEDLYAAVDLVVDKLERQMRKHKTKINRKGRE-KGF------------ 105
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
E EE + ++ ++K ++ P+T EA+ Q+E + HDF+ F + T EI++
Sbjct: 106 AEEIILTSELEEAEETTLDLGKVKQLKVEPMTREEAVFQMELLGHDFFAFLDNTTNEISV 165
Query: 282 VYKRKAGGYGVI 293
VYKR+ GYGV+
Sbjct: 166 VYKRRDTGYGVL 177
>gi|154483107|ref|ZP_02025555.1| hypothetical protein EUBVEN_00808 [Eubacterium ventriosum ATCC
27560]
gi|149735915|gb|EDM51801.1| ribosomal subunit interface protein [Eubacterium ventriosum ATCC
27560]
Length = 179
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I GKN+E+T+ +++ VEEK+GK + R VDV LSV E ++ EV
Sbjct: 1 MKIKIFGKNIEVTEGIRSAVEEKIGKLDKYFAEETR-VDVTLSVNKNE-------QKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL-RKIKEKESDHGRHMKGFNRLKVREP 217
T+ K ++RAEE ++ +Y SID+V I+R+L + + + F +
Sbjct: 53 TIPVKGR-IIRAEEISDDMYVSIDMVEETIERQLVKYKNKIIDKKKSIKEAFTETYIEAD 111
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
E+ ++ + K F + P+ EA ++E + H+F+ F N ET
Sbjct: 112 YEDEDEDQIKIK-------------KTKRFGIKPMDPEEACVEMELLGHNFFVFLNAETE 158
Query: 278 EINIVYKRKAGGYGVIIPK 296
E+N+VYKRK YG+I P+
Sbjct: 159 EVNVVYKRKGNTYGLIEPE 177
>gi|169337981|ref|ZP_02620581.2| ribosomal subunit interface protein [Clostridium botulinum C str.
Eklund]
gi|169295933|gb|EDS78066.1| ribosomal subunit interface protein [Clostridium botulinum C str.
Eklund]
Length = 184
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 27/196 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ GKN+++T+ +++ VE K+ K + K+ EV LSV+ + +I EVT+
Sbjct: 11 VNGKNIQVTEGLRDAVERKLSK-LDKYFDPNVEVITTLSVQ-----RNSQI--VEVTI-- 60
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVREPVT 219
+GV+ RAE+ +YA+ID+V ++R++RK K K HG +K F + P
Sbjct: 61 PFNGVILRAEDSNSDMYAAIDIVLEKLERQIRKQKTKLQRRKHGDALK-FQFIPEYVP-- 117
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
++ +D+ +IV+ K F + P++ EA+ Q+E + H+F+ F N +T E+
Sbjct: 118 -----------KDNEDSIESKIVKTKRFAIKPMSKEEAVLQMELLGHNFFVFTNGDTEEV 166
Query: 280 NIVYKRKAGGYGVIIP 295
N++YKRK G YG+I P
Sbjct: 167 NVLYKRKDGQYGLIEP 182
>gi|293375589|ref|ZP_06621863.1| ribosomal subunit interface protein [Turicibacter sanguinis PC909]
gi|292645806|gb|EFF63842.1| ribosomal subunit interface protein [Turicibacter sanguinis PC909]
Length = 182
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 113/202 (55%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKN-LELTDTVKNHVEEKVG--KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+++ I+G N +T+ +KN++E+KVG + L ++ ++++ R+ ++ + I++
Sbjct: 1 MRIQIRGANRFVVTEAIKNYIEDKVGSLQRFLPNN---QDLEARVYIKIYDV-----IQK 52
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV- 214
EVT+ ++RAEE+ + +YA+IDLV ++R++R+ K K + R +G + V
Sbjct: 53 VEVTI-PGNQFILRAEEENDDLYAAIDLVVDKLERQIRRNKTKANKKIREREGISDYFVT 111
Query: 215 --REPVTQVVENDADVQSEEEDDNFVDEI-VRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
PVT Q+E DE+ ++K + P+ V EAI QL+ + HDFY +
Sbjct: 112 VDDTPVTH--------QAE-------DEVPYKVKNVHLKPMDVEEAIMQLDLLGHDFYVY 156
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
R+ + +VY+RK G YGVI
Sbjct: 157 RDMAVDAVCVVYRRKDGKYGVI 178
>gi|169824099|ref|YP_001691710.1| 30S ribosomal protein S30AE [Finegoldia magna ATCC 29328]
gi|167830904|dbj|BAG07820.1| 30S ribosomal protein S30AE family [Finegoldia magna ATCC 29328]
Length = 179
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 32/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL K+++LTD +K E K+ K + K+ H ++ V F K R EV
Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHK-LDKYFHDEQQARVV-------FKKEKDKARVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E + +ID V + R++RK ++ K+++
Sbjct: 53 TMILDKGVVLRAEESNEDIKTAIDKVEDALARQVRK---------------HKTKLQKRF 97
Query: 219 TQVVENDADVQSEEEDDNFVDEI-----VRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
T+ ++ E ++N EI V+ K F + P+ EAI Q+E +DHDF+ F +
Sbjct: 98 TE----SNSIRFEAVEENSAKEIPTGSIVKTKEFGIKPMDKEEAIMQMELIDHDFFVFLD 153
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
+T +N+VYKR G YG+++P
Sbjct: 154 SKTNNVNVVYKRNDGNYGLLVP 175
>gi|304439051|ref|ZP_07398970.1| ribosomal subunit interface protein [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372410|gb|EFM25997.1| ribosomal subunit interface protein [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 174
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 39/202 (19%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KLI+ GKNL LTD +K E+K+ K + EV+ R F +R EV
Sbjct: 1 MKLILTGKNLTLTDDLKALAEKKLSKL---DKYFADEVEAR-----AVFSHIKNRKRIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F K +RAEE ++ + S+D V ++ R++RK K RLK +
Sbjct: 53 TVFLK-GATLRAEETSDDMETSMDKVVDVLSRQVRKYK-------------TRLKNKSQE 98
Query: 219 TQVVENDADVQSEEEDDNFVDE-------IVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
+ + D NF + IV+ K F++ P+ EA+ Q+E ++HDF+ +
Sbjct: 99 KETIRFD----------NFEEPKEEPKEKIVKRKRFKIHPMFEEEAVVQMELLNHDFFVY 148
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
NE+ G ++Y+R G YG+I
Sbjct: 149 INEKDGTPAVIYRRDDGDYGII 170
>gi|297200100|ref|ZP_06917497.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Streptomyces sviceus ATCC 29083]
gi|297147574|gb|EDY61230.2| sigma 54 modulation protein/SSU ribosomal protein S30P
[Streptomyces sviceus ATCC 29083]
Length = 274
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 25/215 (11%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
V ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R
Sbjct: 44 CVDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVS-KEPNPRQADRCDRV 102
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
E+TL ++ V+RAE A YA++DL + + +LRK E + H R +G RL E
Sbjct: 103 EITLRSRG-PVIRAEAAASDPYAALDLAAEKLDARLRK--EHDKRHTR--RGARRLTAAE 157
Query: 217 -----PVTQVVENDADVQSEEEDDNFVDE-------------IVRMKFFEMPPLTVSEAI 258
P + D EE+ D + +VR K P+T+ +A+
Sbjct: 158 VPDHVPDAATLNGHGDPVHEEDSDGVPVKKIGSLEIKGEGPLVVREKTHVASPMTLDQAL 217
Query: 259 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 218 YEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 252
>gi|310778313|ref|YP_003966646.1| ribosomal subunit interface protein [Ilyobacter polytropus DSM
2926]
gi|309747636|gb|ADO82298.1| ribosomal subunit interface protein [Ilyobacter polytropus DSM
2926]
Length = 191
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 104/197 (52%), Gaps = 18/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++LII G++L +T+ ++ H E+K+ K + K+ + EVDV LS + G +V
Sbjct: 12 MRLIIHGRHLNVTEPIRLHAEKKINK-IKKYFDNIMEVDVTLSAESLKTGD---YHTADV 67
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
++ + + +A E +YASID V +++++++K KEK D +H G P
Sbjct: 68 LVYMNGNKI-KATATDEDLYASIDEVVDVLEQQVKKHKEKLRD-NKHNAGRKNTIKYNPE 125
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T+ ++ +E+ V + + P+ V EA+ Q+E ++ FY F N +T E
Sbjct: 126 TKTID-------KEDSKKIVQTTISAR-----PMFVEEAVMQMEVLNKQFYVFMNADTEE 173
Query: 279 INIVYKRKAGGYGVIIP 295
+N+VY+R G YG + P
Sbjct: 174 LNVVYRRNDGDYGHVEP 190
>gi|329120946|ref|ZP_08249577.1| ribosomal subunit interface protein [Dialister micraerophilus DSM
19965]
gi|327471108|gb|EGF16562.1| ribosomal subunit interface protein [Dialister micraerophilus DSM
19965]
Length = 176
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 25/196 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L I+GKNLE+T + ++VE+ GK + + + + + +R + CEV
Sbjct: 1 MELKIRGKNLEVTKALHSYVEKHTGKI---QRYFDKPIKMNVLMRISN-----KTNTCEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+F + GV+ R E ++ +Y SIDLV ++R++ K K + + R F++ K RE
Sbjct: 53 TVFVE--GVILRGVEKSDDMYKSIDLVFDKVERQIHKYKTRLARRYREENVFSK-KFREE 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
E + EIV+ K F + P++ EAI Q+ V HDF+ F N ET
Sbjct: 110 KETFGEEEF-------------EIVKTKKFNINPMSPEEAILQMNLVGHDFFMFFNSETS 156
Query: 278 EINIVYKRKAGGYGVI 293
+I +VYKR G YG+I
Sbjct: 157 DIAVVYKRNDGKYGLI 172
>gi|456385100|gb|EMF50678.1| hypothetical protein SBD_8242 [Streptomyces bottropensis ATCC
25435]
Length = 275
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 109/226 (48%), Gaps = 25/226 (11%)
Query: 87 PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGG 145
PV S G V ++++G+ E+ + + HV EK+ + + K V +DV +S +
Sbjct: 34 PVERSDPGTEFCVDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVS-KEP 92
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
+ R R E+TL ++ V+RAE A YA++DL + ++ +LRK +K
Sbjct: 93 NPRQADRSDRVEITLHSRG-PVIRAEAAASDPYAALDLAADKLEARLRKQHDKRYTR--- 148
Query: 206 MKGFNRLKVRE-----PVTQVVENDADVQSEEEDDNFVDE-------------IVRMKFF 247
+G RL E P + + V EE+ D + IVR K
Sbjct: 149 -RGARRLTAAEVADHVPGVATLNGNGYVADEEKTDGVPTKKIGSLEVKGEGPLIVREKTH 207
Query: 248 EMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
P+T+ +A+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 208 VASPMTLDQALYEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 253
>gi|383776047|ref|YP_005460613.1| putative S30AE family protein [Actinoplanes missouriensis 431]
gi|381369279|dbj|BAL86097.1| putative S30AE family protein [Actinoplanes missouriensis 431]
Length = 206
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 39/218 (17%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV EK+ K L+R VDV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHYREHVAEKLSKVERYDPKLMR-VDVELF-----HERNPRQSDTCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRHMK------ 207
R E+T+ T+ VVRAE A+ YA++D + + +LR+ ++ H GRH
Sbjct: 55 RVEITVMTRG-PVVRAEAQAQDFYAALDCAINKLDGRLRRSADRRRVHRGRHAPVSVAAA 113
Query: 208 ----------GFNRLKVREPV--TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVS 255
G V EP T++ E+ AD IVR K P+TV
Sbjct: 114 TANLPTDVSPGRTATLVAEPALDTELAEHGADQPWR---------IVREKEHSAEPMTVD 164
Query: 256 EAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+A+ Q+E V HDFY F+++E+G ++VY+R+ YG++
Sbjct: 165 DALFQMELVGHDFYLFQDKESGRPSVVYRRRGYDYGIL 202
>gi|352685086|ref|YP_004897071.1| sigma-54 modulation protein [Acidaminococcus intestini RyC-MR95]
gi|350279741|gb|AEQ22931.1| sigma-54 modulation protein [Acidaminococcus intestini RyC-MR95]
Length = 165
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 73/130 (56%), Gaps = 11/130 (8%)
Query: 167 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDA 226
V+RA+E +E +YASID I+R++ K K + R F V PV+
Sbjct: 45 VLRAQEGSENMYASIDNCVEKIERQIHKYKTRLMK--RKYNNFRDAAV-PPVS------G 95
Query: 227 DVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRK 286
DV+ D F ++ R K + M P+ V EAI Q+ ++HDF+ F N+ET + +VY+RK
Sbjct: 96 DVEEASADGEF--KVARTKTYAMRPMNVQEAIMQMNMLNHDFFVFFNDETESMAVVYRRK 153
Query: 287 AGGYGVIIPK 296
AG YG+I P+
Sbjct: 154 AGDYGLINPE 163
>gi|19551984|ref|NP_599986.1| ribosome-associated protein Y [Corynebacterium glutamicum ATCC
13032]
gi|62389646|ref|YP_225048.1| ribosome-associated protein Y (PSrp-1) [Corynebacterium glutamicum
ATCC 13032]
gi|145294921|ref|YP_001137742.1| hypothetical protein cgR_0867 [Corynebacterium glutamicum R]
gi|417971988|ref|ZP_12612904.1| hypothetical protein CgS9114_13226 [Corynebacterium glutamicum
S9114]
gi|418246666|ref|ZP_12873060.1| hypothetical protein KIQ_14292 [Corynebacterium glutamicum ATCC
14067]
gi|21323525|dbj|BAB98152.1| Ribosome-associated protein Y (PSrp-1) [Corynebacterium glutamicum
ATCC 13032]
gi|41324981|emb|CAF19462.1| Ribosome-associated protein Y (PSrp-1) [Corynebacterium glutamicum
ATCC 13032]
gi|140844841|dbj|BAF53840.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043742|gb|EGV39430.1| hypothetical protein CgS9114_13226 [Corynebacterium glutamicum
S9114]
gi|354509281|gb|EHE82216.1| hypothetical protein KIQ_14292 [Corynebacterium glutamicum ATCC
14067]
gi|385142906|emb|CCH23945.1| ribosome-associated protein Y [Corynebacterium glutamicum K051]
Length = 221
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 42/219 (19%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC--- 156
K+ I G+N+E+ D H E+V + K + +D L+ E P RR
Sbjct: 15 KVSITGRNVEVPD----HFAERVNTKLAK----IERLDPTLTFFHVELQHEPNPRRADES 66
Query: 157 ---EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
++T K H + RAE ++ YA+++ + ++R LRK+K + S +R
Sbjct: 67 DRIQITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKARRS--------ISRSG 117
Query: 214 VREPV------TQVVEN-------------DADVQSEEEDDNFVDEIVRMKFFEMPPLTV 254
R P+ Q+V D D +++ DD ++VR K P++V
Sbjct: 118 HRAPLGTGEVGAQLVAESQEARGADELGKYDVDPYADKVDDVMPGQVVRTKEHPATPMSV 177
Query: 255 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+A+ ++E V HDFY F NEET + ++VY+R A YG+I
Sbjct: 178 DDALSEMELVGHDFYLFVNEETNQPSVVYRRHAFDYGLI 216
>gi|254304059|ref|ZP_04971417.1| ribosome-associated protein Y [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|422339678|ref|ZP_16420636.1| putative sigma(54) modulation protein [Fusobacterium nucleatum
subsp. polymorphum F0401]
gi|148324251|gb|EDK89501.1| ribosome-associated protein Y [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|355370821|gb|EHG18200.1| putative sigma(54) modulation protein [Fusobacterium nucleatum
subsp. polymorphum F0401]
Length = 181
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATETDLYASIDKAVDIMEGLLKKHKEKRS----------RAKVQDDT 105
Query: 219 -TQVVENDADVQSEEEDDNFVDE--IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+ D V+ EE+ DE +VR+ + + P+ +SEAI QLE ++ F+ F N E
Sbjct: 106 RKKSYSFDYIVEPEEK---LSDEKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNSE 161
Query: 276 TGEINIVYKRKAGGYGVI 293
TG++ +VYKRK G YGVI
Sbjct: 162 TGKMAVVYKRKDGDYGVI 179
>gi|302381104|ref|ZP_07269564.1| ribosomal subunit interface protein [Finegoldia magna
ACS-171-V-Col3]
gi|302311151|gb|EFK93172.1| ribosomal subunit interface protein [Finegoldia magna
ACS-171-V-Col3]
Length = 179
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 102/200 (51%), Gaps = 28/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL K+++LTD +K E K+ K + K+ H ++ V F K R EV
Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHK-LDKYFHDEQQARVV-------FKKEKDKARVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E + +ID V + R++RK ++ K+++
Sbjct: 53 TMILDKGVVLRAEESNEDIKTAIDKVEDALARQVRK---------------HKTKLQKRF 97
Query: 219 TQVVENDADVQSEEEDDNF---VDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
T+ N ++ EE++ IV+ K F + P+ EAI Q+E +DHDF+ F + +
Sbjct: 98 TE--SNSIRFEAVEENNGKEIPTGSIVKTKEFGIKPMDKEEAIMQMELIDHDFFVFLDSK 155
Query: 276 TGEINIVYKRKAGGYGVIIP 295
T +N+VYKR G YG+++P
Sbjct: 156 TNNVNVVYKRNDGNYGLLVP 175
>gi|282855680|ref|ZP_06264989.1| 30S ribosomal protein S30AE family [Pyramidobacter piscolens W5455]
gi|282586480|gb|EFB91739.1| 30S ribosomal protein S30AE family [Pyramidobacter piscolens W5455]
Length = 176
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 13/129 (10%)
Query: 167 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDA 226
++R EE + S DL ++R++R+ KE D H+K +R E
Sbjct: 60 IMRGEEKDVDLRKSFDLGLKNLERRIRRHKEYLVDRA-HLKTHDR-----------EFSF 107
Query: 227 DVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRK 286
D Q E D+ V IV+ K F++ P+T EA+ Q++ ++H FY F N E+G++N+VYKR+
Sbjct: 108 DDQPEL-DELPVGTIVKEKRFDLYPMTPDEAVMQMDLLEHSFYMFLNAESGKVNVVYKRE 166
Query: 287 AGGYGVIIP 295
AGGYGV+IP
Sbjct: 167 AGGYGVLIP 175
>gi|322418294|ref|YP_004197517.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacter sp.
M18]
gi|320124681|gb|ADW12241.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacter sp.
M18]
Length = 182
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 26/196 (13%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
+++E ++ +K++ EEK+ + V K+ V V L+V +IR T K
Sbjct: 8 RHMEPSEALKSYAEEKLDR-VKKYIDDPIVVQVFLTVE--------KIRHLAEVTITAKG 58
Query: 166 GVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEND 225
++A E+ +YASID VS I+R+LR+ KE R+K +P E
Sbjct: 59 ITIKAAEETNDMYASIDAVSDKIERQLRRFKE-------------RIKAHKPAADARERQ 105
Query: 226 ---ADVQSEE-EDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
A VQ++ E+ I++ K F M P++V EA+ Q+E + DF + T IN+
Sbjct: 106 VQKAIVQAQGIEEGTQTPVIIKTKSFTMKPMSVEEAVMQMELLHKDFLVYTESSTETINV 165
Query: 282 VYKRKAGGYGVIIPKG 297
VY+RK G YG+I P+
Sbjct: 166 VYRRKDGNYGLISPEN 181
>gi|328956711|ref|YP_004374097.1| ribosome-associated sigma 54 modulation protein [Carnobacterium sp.
17-4]
gi|328673035|gb|AEB29081.1| ribosome-associated sigma 54 modulation protein [Carnobacterium sp.
17-4]
Length = 180
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 106/191 (55%), Gaps = 19/191 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++++VE+KVGK V K+ + V E ++++ + + EVT+
Sbjct: 6 VRGENIEVTAAIRSYVEKKVGK-VEKYFNDVPEATAHVNLKT----YSDKTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +Y SIDLV+ ++R++RK K K + R +G N VV
Sbjct: 60 LPYLVLRAEETSPDLYGSIDLVTDKLERQMRKYKTKVN---RRSRGSN----------VV 106
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
A EEE IVR K + P+ EA+ Q++ + H+F+ F + +T +IV
Sbjct: 107 VPPALPGEEEELMEDEVNIVRTKRLSLKPMDSEEAVLQMDMLGHNFFIFEDADTNGTSIV 166
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 167 YRRKDGKYGLI 177
>gi|377557110|ref|ZP_09786769.1| Ribosomal subunit interface protein [Lactobacillus gastricus PS3]
gi|376166355|gb|EHS85266.1| Ribosomal subunit interface protein [Lactobacillus gastricus PS3]
Length = 180
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 33/202 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+TD ++ +VE+++ K ++ E V L V + + E
Sbjct: 2 LKFNIRGENIEVTDAIREYVEKRLSKLEKYLEENVPAEAHVNLKVYSN------KTYKVE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV--- 214
VT+ + +RAEE + +Y SIDLV+ ++R++RK K K + R KG L+
Sbjct: 56 VTI-PLPYLTLRAEETSNDMYGSIDLVTDKLERQVRKYKTKVNRKARE-KGLKDLEFVDT 113
Query: 215 ---REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
EPV+ + +IVR K + P+ EA+ Q++ + HDF+ F
Sbjct: 114 VDDEEPVSDL------------------KIVRTKQISLKPMDSEEAVLQMDMLGHDFFVF 155
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
+ +T +IVY+R G YG+I
Sbjct: 156 EDADTNGTSIVYRRNDGCYGLI 177
>gi|414157016|ref|ZP_11413317.1| ribosome-associated factor Y [Streptococcus sp. F0442]
gi|410870009|gb|EKS17969.1| ribosome-associated factor Y [Streptococcus sp. F0442]
Length = 180
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 105/195 (53%), Gaps = 20/195 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K R G +L
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIEKKNRVKSGAGKL----FT 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
VVE A + +VR K ++ P+ + EAI Q+E + HDF+ +R+ E
Sbjct: 112 DAVVEEAATTEK----------VVRSKTIDLEPMDIEEAILQMELLAHDFFIYRDAEDNT 161
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 162 TNVIYRREDGDIGLL 176
>gi|304386242|ref|ZP_07368575.1| ribosomal subunit interface protein [Pediococcus acidilactici DSM
20284]
gi|304327599|gb|EFL94826.1| ribosomal subunit interface protein [Pediococcus acidilactici DSM
20284]
Length = 197
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 108/192 (56%), Gaps = 19/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T++++++VE+++GK + V L V R + EVT+
Sbjct: 19 VRGENIEVTESIRDYVEKRIGKIEKYFDQGANPKAHVNLKVYQ------DRTAKVEVTI- 71
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YAS+DLV+ ++R++RK K K NR K RE +
Sbjct: 72 PLPYLVLRAEETSPDLYASVDLVTDKLERQIRKYKTK----------INR-KSRETGYKG 120
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
VE + E+E++ +IVR K + P+ EAI Q++ + H+F+ + + +TG ++I
Sbjct: 121 VEIPQEDAREDEEEASEFDIVRTKQVSLKPMGAEEAILQMDMLGHNFFIYEDADTGSVDI 180
Query: 282 VYKRKAGGYGVI 293
VY+R G YG+I
Sbjct: 181 VYRRHDGRYGLI 192
>gi|25027329|ref|NP_737383.1| hypothetical protein CE0773 [Corynebacterium efficiens YS-314]
gi|23492610|dbj|BAC17583.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 235
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 42/216 (19%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC------ 156
I G+N+E V H E+V K + K + +D L+ E P RR
Sbjct: 29 ITGRNVE----VPEHFAERVHKKLAK----IERLDPTLTFFHVELQHEPNPRRADESNRI 80
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
++T K H + RAE ++ YA+++ + ++R LRK+K + S +R R
Sbjct: 81 QITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKARRS--------ISRSGHRA 131
Query: 217 PVT------QVVEN-------------DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEA 257
P++ Q+V D D +++ DD +IVR K P++V +A
Sbjct: 132 PLSTGEVGAQLVAESQEARGADDLGKYDVDPYADKVDDVVPGQIVRTKEHPATPMSVDDA 191
Query: 258 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ ++E V HDFY F NEET + ++VY+R A YG+I
Sbjct: 192 LSEMELVGHDFYLFINEETQQPSVVYRRHAFDYGLI 227
>gi|313888609|ref|ZP_07822274.1| ribosomal subunit interface protein [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845338|gb|EFR32734.1| ribosomal subunit interface protein [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 175
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 22/189 (11%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
GKN+ELT+++K E+K + + EV+ R+ F + E T+F K
Sbjct: 7 GKNIELTESLKEIAEKKFSRL---DKYFSEEVETRIV-----FSTIKDEQTVEATIFLPK 58
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
++RAEE + +Y+S+D + R++RK K RLK R + +
Sbjct: 59 -TIIRAEETTDDMYSSMDNAVDALARQIRKHK-------------TRLKRRYQNNETIRF 104
Query: 225 DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYK 284
D + E D +IV+ K FE+ P+ EAI Q++ ++H+F+ F + +T ++IVYK
Sbjct: 105 DELMDKEAAKDEPEHKIVKRKNFELNPMNEEEAILQMDLLNHNFFVFLDGDTDGVSIVYK 164
Query: 285 RKAGGYGVI 293
RK G YG I
Sbjct: 165 RKDGNYGKI 173
>gi|259506533|ref|ZP_05749435.1| S30AE family protein [Corynebacterium efficiens YS-314]
gi|259165953|gb|EEW50507.1| S30AE family protein [Corynebacterium efficiens YS-314]
Length = 234
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 42/216 (19%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC------ 156
I G+N+E V H E+V K + K + +D L+ E P RR
Sbjct: 28 ITGRNVE----VPEHFAERVHKKLAK----IERLDPTLTFFHVELQHEPNPRRADESNRI 79
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
++T K H + RAE ++ YA+++ + ++R LRK+K + S +R R
Sbjct: 80 QITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKARRS--------ISRSGHRA 130
Query: 217 PVT------QVVEN-------------DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEA 257
P++ Q+V D D +++ DD +IVR K P++V +A
Sbjct: 131 PLSTGEVGAQLVAESQEARGADDLGKYDVDPYADKVDDVVPGQIVRTKEHPATPMSVDDA 190
Query: 258 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ ++E V HDFY F NEET + ++VY+R A YG+I
Sbjct: 191 LSEMELVGHDFYLFINEETQQPSVVYRRHAFDYGLI 226
>gi|227505516|ref|ZP_03935565.1| ribosome-associated inhibitor protein Y [Corynebacterium striatum
ATCC 6940]
gi|227197880|gb|EEI77928.1| ribosome-associated inhibitor protein Y [Corynebacterium striatum
ATCC 6940]
Length = 215
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 29/214 (13%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR- 155
++ ++ I G+N+E+ D + V EK+ K + +D L+ E P RR
Sbjct: 5 TNAQVTITGRNVEVPDHFQERVTEKLAK--------IERLDPTLTFFHVELQHEPNPRRE 56
Query: 156 -----CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK----ESDHGRHM 206
++T K H + RAE ++ YA+++ + ++R LRK+K + +S H R
Sbjct: 57 AESDRIQITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKVRRENVKSGH-RAQ 114
Query: 207 KGFNRLKVREPVTQVVEND-------ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIE 259
KG L + EN+ D +E +D +IVR K P++V EA+
Sbjct: 115 KGTGELAAE--MVAAAENERAKEERYIDPYAETVEDVRPGQIVRSKEHPATPMSVDEALS 172
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
++E V HDFY F NEE + ++VY+R A YG+I
Sbjct: 173 EMELVGHDFYLFINEENNKPSVVYRRHAFDYGII 206
>gi|384515111|ref|YP_005710203.1| hypothetical protein CULC809_00570 [Corynebacterium ulcerans 809]
gi|397653433|ref|YP_006494116.1| hypothetical protein CULC0102_0680 [Corynebacterium ulcerans 0102]
gi|334696312|gb|AEG81109.1| hypothetical protein CULC809_00570 [Corynebacterium ulcerans 809]
gi|393402389|dbj|BAM26881.1| hypothetical protein CULC0102_0680 [Corynebacterium ulcerans 0102]
Length = 220
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 33/214 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
V++ I G+N+E V H E+V + K + +D L+ E P RR E
Sbjct: 15 VQVSITGRNVE----VPEHFAERVNAKLAK----IARLDPTLTFFHVELQHEPNPRRSEQ 66
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES---DHGRHMKGF 209
+T K H + RAE ++ YA+++ + ++R LRK+K + S R KG
Sbjct: 67 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPKGA 125
Query: 210 NRLKVREPVTQVVEN--DADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIE 259
E ++V+ A S+ + D + D +VR K P++V +A+
Sbjct: 126 G-----ETAAELVQEAETARADSQYDHDPYADSVEEVLPGRVVRHKEHPSTPMSVDDALS 180
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
++E V HDFY F NEETG ++VY+R A YG+I
Sbjct: 181 EMELVGHDFYMFVNEETGRPSVVYRRHAFDYGLI 214
>gi|395242685|ref|ZP_10419681.1| Putative phosphate starvation inducible protein stressrelated
[Lactobacillus pasteurii CRBIP 24.76]
gi|394479933|emb|CCI85921.1| Putative phosphate starvation inducible protein stressrelated
[Lactobacillus pasteurii CRBIP 24.76]
Length = 181
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 23/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+TD ++++V++++ K + K+ L ++V V L V K
Sbjct: 2 LKYNVRGENIEVTDALRSYVDKRL-KKLEKYFELSQDVIAHVNLKVYRDHSAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V
Sbjct: 55 EVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGIQDFFVET 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
P +EEE +IVR K + P+ EAI Q++ + HDF+ F++ ET
Sbjct: 113 P------------AEEEKKPGEFDIVRNKRVSLKPMEPEEAILQMDMLGHDFFVFQDAET 160
Query: 277 GEINIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 161 NGTSVVYRRNDGRYGLI 177
>gi|296111497|ref|YP_003621879.1| phosphate starvation inducible stress related protein [Leuconostoc
kimchii IMSNU 11154]
gi|339491234|ref|YP_004705739.1| putative phosphate starvation inducible stress-like protein
[Leuconostoc sp. C2]
gi|295833029|gb|ADG40910.1| putative phosphate starvation inducible stress related protein
[Leuconostoc kimchii IMSNU 11154]
gi|338852906|gb|AEJ31116.1| putative phosphate starvation inducible stress related protein
[Leuconostoc sp. C2]
Length = 182
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 112/191 (58%), Gaps = 19/191 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+ +TD ++ +VE+++ K + ++ + +++R K + EVT+
Sbjct: 6 VRGENIAVTDALREYVEKRLTKL---NRYIEEKSRANVNLRTY---KSDNSGKAEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ +YA++D VS ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTNPDLYAAVDAVSEKLERQIRKYKTK----------INR-KSRETGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+++ ++ + E DD+ + +IVR K ++ P++ EA Q++ ++HDF+ F++ ET +++
Sbjct: 108 DSNDEIPAAEVDDDAL-QIVRTKQVDLKPMSPEEAALQMDLLEHDFFIFQDAETNTDSVI 166
Query: 283 YKRKAGGYGVI 293
YKR+ G YG++
Sbjct: 167 YKRQDGKYGLL 177
>gi|339480905|ref|ZP_08656564.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Leuconostoc pseudomesenteroides KCTC 3652]
gi|399516855|ref|ZP_10758437.1| Ribosomal subunit interface protein [Leuconostoc
pseudomesenteroides 4882]
gi|398648304|emb|CCJ66464.1| Ribosomal subunit interface protein [Leuconostoc
pseudomesenteroides 4882]
Length = 181
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRL-SVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+TD ++++VE+++ K + ++ + +V L + R GK EVT+
Sbjct: 6 VRGENIEVTDAIRDYVEKRLTK-LNRYIEESAKANVNLRTYRSDNSGK------VEVTIV 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAE+ +YA++D VS I+R++RK K K + R GF + + + +
Sbjct: 59 LP-YVVLRAEDTNADMYAAVDNVSEKIERQIRKYKTKINRKSRET-GFKGIDSHDEIPET 116
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+D+ +Q IVR K ++ P++ EA Q++ ++HDF+ F++ E+ ++
Sbjct: 117 DVDDSALQ-----------IVRTKQVDLKPMSPEEAALQMDLLEHDFFIFKDAESNTDSV 165
Query: 282 VYKRKAGGYGVI 293
+YKR G YG++
Sbjct: 166 IYKRTDGKYGLL 177
>gi|354807384|ref|ZP_09040853.1| 30S ribosomal interface protein S30EA [Lactobacillus curvatus CRL
705]
gi|354514106|gb|EHE86084.1| 30S ribosomal interface protein S30EA [Lactobacillus curvatus CRL
705]
Length = 181
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 104/198 (52%), Gaps = 33/198 (16%)
Query: 103 IQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+TD ++++VE+K+ K + +H V L V + K
Sbjct: 6 VRGENIEVTDAIRSYVEKKISKLEKYFDDSATATAH------VNLKVYSDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAEE + +Y S+DLV+ ++R++RK K K + R +G +++
Sbjct: 54 VEVTI-PLPYLVLRAEETSPDMYGSVDLVTDKLERQIRKFKTKINRKSRE-RGIKGMELT 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
P +A+ EE ++VR K + P+ EAI Q+ + H+F+ F + E
Sbjct: 112 VP-------EAEALPEESM-----QVVRTKRVSLKPMDSEEAILQMNMLGHEFFIFEDSE 159
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKR+ G YG+I
Sbjct: 160 TNGTSIVYKRQDGRYGLI 177
>gi|337290191|ref|YP_004629212.1| hypothetical protein CULC22_00577 [Corynebacterium ulcerans
BR-AD22]
gi|334698497|gb|AEG83293.1| hypothetical protein CULC22_00577 [Corynebacterium ulcerans
BR-AD22]
Length = 220
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 33/214 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
V++ I G+N+E V H E+V + K + +D L+ E P RR E
Sbjct: 15 VQVSITGRNVE----VPEHFAERVNTKLAK----IARLDPTLTFFHVELQHEPNPRRSEQ 66
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES---DHGRHMKGF 209
+T K H + RAE ++ YA+++ + ++R LRK+K + S R KG
Sbjct: 67 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPKGA 125
Query: 210 NRLKVREPVTQVVEN--DADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIE 259
E ++V+ A S+ + D + D +VR K P++V +A+
Sbjct: 126 G-----ETAAELVQEAETARADSQYDHDPYADSVEEVLPGRVVRHKEHPSTPMSVDDALS 180
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
++E V HDFY F NEETG ++VY+R A YG+I
Sbjct: 181 EMELVGHDFYMFVNEETGRPSVVYRRHAFDYGLI 214
>gi|313891980|ref|ZP_07825581.1| ribosomal subunit interface protein [Dialister microaerophilus UPII
345-E]
gi|313119623|gb|EFR42814.1| ribosomal subunit interface protein [Dialister microaerophilus UPII
345-E]
Length = 176
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 25/196 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L I+GKNLE+T + ++VE+ GK + + + + + +R + CEV
Sbjct: 1 MELKIRGKNLEVTKALHSYVEKHTGKI---QRYFDKPIKMNVLMRISN-----KTNTCEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T F + GV+ R E ++ +Y SIDLV ++R++ K K + + R F++ K RE
Sbjct: 53 TAFVE--GVILRGVEKSDDMYKSIDLVFDKVERQIHKYKTRLARRYREENVFSK-KFREE 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
E + EIV+ K F + P++ EAI Q+ V HDF+ F N ET
Sbjct: 110 KETFGEEEF-------------EIVKTKKFNINPMSPEEAILQMNLVGHDFFMFFNSETS 156
Query: 278 EINIVYKRKAGGYGVI 293
+I +VYKR G YG+I
Sbjct: 157 DIAVVYKRNDGKYGLI 172
>gi|325836787|ref|ZP_08166254.1| ribosomal subunit interface protein [Turicibacter sp. HGF1]
gi|325491165|gb|EGC93454.1| ribosomal subunit interface protein [Turicibacter sp. HGF1]
Length = 182
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 110/202 (54%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKN-LELTDTVKNHVEEKVG--KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+++ I+G N +T+ +KN++E KVG + L ++ ++++ R+ ++ + I++
Sbjct: 1 MRIQIRGANRFVVTEAIKNYIENKVGSLQRFLPNN---QDLEARVYIKIYDV-----IQK 52
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV- 214
EVT+ ++RAEE+ + +YA+IDLV ++R++R+ K K + R +G + V
Sbjct: 53 VEVTI-PGNQFILRAEEENDDLYAAIDLVVDKLERQIRRNKTKANKKIREREGISDYFVT 111
Query: 215 --REPVTQVVENDADVQSEEEDDNFVDEI-VRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
PVT VE DE+ ++K + P+ V EAI QL+ + HDFY +
Sbjct: 112 VDDTPVTHQVE---------------DEVPYKVKNVHLKPMDVEEAIMQLDLLGHDFYVY 156
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
R+ + +VY RK G YGVI
Sbjct: 157 RDMAVDAVCVVYLRKDGKYGVI 178
>gi|386585592|ref|YP_006081994.1| ribosome-associated protein [Streptococcus suis D12]
gi|353737738|gb|AER18746.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis D12]
Length = 180
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 112/197 (56%), Gaps = 24/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++ +VEEKV K + K+ + +E++ ++++ K R +R +V
Sbjct: 2 IKFSIRGENLEVTDALRTYVEEKVAK-IEKYFNEEQELNAKVNL------KVYRDKRAKV 54
Query: 159 TLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVRE 216
+ V +RAE+ ++ +Y SIDLV I+R++R+ K K E H R KV
Sbjct: 55 EVTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKH--------RQKV-- 104
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
QV ++ Q+ EE ++VR K ++ P+ + EA+ QLE + HDF+ + +
Sbjct: 105 ATGQVFTDELVEQTGEEV-----KVVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDAND 159
Query: 277 GEINIVYKRKAGGYGVI 293
G N++Y+R+ G G++
Sbjct: 160 GTTNVLYRREDGDLGLL 176
>gi|336400400|ref|ZP_08581179.1| hypothetical protein HMPREF0404_00470 [Fusobacterium sp. 21_1A]
gi|336162588|gb|EGN65552.1| hypothetical protein HMPREF0404_00470 [Fusobacterium sp. 21_1A]
Length = 181
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 30/202 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ L+K KEK S R K+++
Sbjct: 57 LAYLS-GSTLKATATESDLYASIDKAVDIMESLLKKHKEKRS----------RAKIQDDT 105
Query: 219 TQ-------VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
+ +VE + E++ +VR+ + + P+ +SEAI QLE ++ F+ F
Sbjct: 106 RKRSYSFDYIVEAGEKLSDEKK-------LVRV-YLPLKPMEISEAILQLEYLNRVFFAF 157
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
N ETG++ +VYKRK G YGVI
Sbjct: 158 TNSETGKMAVVYKRKDGDYGVI 179
>gi|339634881|ref|YP_004726522.1| ribosome-associated protein Y (PSrp-1) [Weissella koreensis KACC
15510]
gi|420160880|ref|ZP_14667651.1| ribosome-associated inhibitor protein Y [Weissella koreensis KCTC
3621]
gi|338854677|gb|AEJ23843.1| ribosome-associated protein Y (PSrp-1) [Weissella koreensis KACC
15510]
gi|394745630|gb|EJF34448.1| ribosome-associated inhibitor protein Y [Weissella koreensis KCTC
3621]
Length = 187
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 111/199 (55%), Gaps = 21/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++ I++G+N+E+T+ +K +V +++ + + + V V++R R +
Sbjct: 2 LEFIVRGENIEVTEAIKAYVIKRLTRLERYLNDDNKYVAHVNLR--------SYQERTFK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + ++RAE+ + +Y SID VS ++R++RK K K + R KG+ +
Sbjct: 54 IEVTI-QLPYLLLRAEDTQDDLYQSIDFVSDKLERQIRKYKTKVNRKSRE-KGYKGID-- 109
Query: 216 EPVTQVVENDADVQSEEEDD-NFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
T + E+ + Q EEE+D F EIVR K + P+ V EAI Q++ + H+F+ F++
Sbjct: 110 ---TFMNESLDEPQLEEEEDAQF--EIVRTKHLSLKPMDVEEAILQMDLLGHNFFVFQDA 164
Query: 275 ETGEINIVYKRKAGGYGVI 293
E+ +VYKRK G Y +I
Sbjct: 165 ESDLPAVVYKRKDGKYALI 183
>gi|195978647|ref|YP_002123891.1| ribosomal subunit interface protein [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195975352|gb|ACG62878.1| ribosomal subunit interface protein [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 182
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 110/198 (55%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ + +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVVEQEIDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R +
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KMST 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+QV ++ + + EE ++VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 SQVFTSEFEAEQAEETPEI--KVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDAEDGA 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++Y+R+ G G+I K
Sbjct: 165 TNVLYRREDGDLGLIEAK 182
>gi|380303017|ref|ZP_09852710.1| 30S ribosomal protein S30P/sigma 54 modulation protein
[Brachybacterium squillarum M-6-3]
Length = 216
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 26/214 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI----R 154
+++ + G+++++ D + H+ EK+ K +R VDV +S K PR
Sbjct: 1 MEINVVGRHMDVPDRFRRHLSEKLDKVTQLAPAALR-VDVEVSQE-----KNPRQSELSD 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-----HMKGF 209
R E+T+ V+R+E A+ +Y ++D+ + +LR+ ++K DH R H G
Sbjct: 55 RVELTVVDNG-AVIRSEARADDLYGALDIAYGKLLERLRRARDKRKDHRRGRDRSHQAGA 113
Query: 210 NRLKVR----EPVTQVVEND--ADVQSEEEDDNFVDE----IVRMKFFEMPPLTVSEAIE 259
L+ EP + E + A +S+ + + + ++R K P+ + +A+
Sbjct: 114 PSLRTMTPDGEPPAPLSEPEPAAPAESDAAEQDLATQGSPVVIREKKHPARPMDIDDALY 173
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
Q+E V HDF+ F + ETG +VY+RK YGVI
Sbjct: 174 QMELVGHDFFLFVDAETGNPKVVYRRKGWNYGVI 207
>gi|414153365|ref|ZP_11409692.1| conserved hypothetical protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411455747|emb|CCO07595.1| conserved hypothetical protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 173
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 26/197 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKN+++T ++++VE+++ K + + + E L V G + EV
Sbjct: 1 MKVQVRGKNIQVTPALRDYVEKRLNK-LDRFLDNMGEAVATLVVEGDS-------HKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE +Y+S+DLV ++R++ + K + NR R
Sbjct: 53 TIPVNGM-LLRGEEATGEMYSSVDLVVEKLERQIERYKAR----------INRRSGRSAT 101
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
V E AD ++E ++++ K F + P+++ EAI Q+ + HDF+ F N ET +
Sbjct: 102 GAVAE--ADKPADE-----APQVIKTKRFAIKPMSLDEAILQMNLLGHDFFVFSNAETEQ 154
Query: 279 INIVYKRKAGGYGVIIP 295
N+VY+RK G YG+I P
Sbjct: 155 TNVVYRRKDGNYGLIEP 171
>gi|326792474|ref|YP_004310295.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
lentocellum DSM 5427]
gi|326543238|gb|ADZ85097.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
lentocellum DSM 5427]
Length = 177
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I GKN+ELT ++N VEEK+ K + K+ + + LSV K I E+
Sbjct: 1 MKYNISGKNIELTAALENAVEEKIVK-LDKYFNDSVMAQITLSVE-----KLSHI--IEI 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ F V+RAE + + +Y +D ++I++++ K K + D R+
Sbjct: 53 TIPFNG--SVLRAEVEGKNMYNIMDDAVAVIEKQINKYKNRLRDKHRN------------ 98
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V E E+E+D +I + K F + P++ EA+ Q+E V H+F+ + + ET
Sbjct: 99 --TVSEFTPSFLEEDENDGVTLKIEKTKKFAIKPMSAEEAVLQMELVGHNFFVYLDGETE 156
Query: 278 EINIVYKRKAGGYGVIIP 295
E+N+VYKRK G YG+I P
Sbjct: 157 EVNVVYKRKNGTYGLIEP 174
>gi|319938278|ref|ZP_08012675.1| 30S ribosomal interface protein S30EA [Coprobacillus sp. 29_1]
gi|319806571|gb|EFW03229.1| 30S ribosomal interface protein S30EA [Coprobacillus sp. 29_1]
Length = 176
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 109/196 (55%), Gaps = 24/196 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+I++GKN+ELT+ +++ + +K+ + K+ + V+ ++ +R G ++ EV
Sbjct: 1 MKIIVRGKNIELTEGIESKINKKLN-MLDKYFIMSDNVEAKVLIRTYPLG-----QKIEV 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVREP 217
T+ T+ + ++RAE + +Y +IDLV ++ ++RK K + S + K FN
Sbjct: 55 TIPTE-YVLLRAEVVDQDLYNAIDLVIDKLEGQIRKYKTRLSRKSKDNKLAFN------- 106
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ + ++ +EED +V+ K P+ + EAI Q+E + H F+ +R+ ET
Sbjct: 107 ----IASIVPLEDQEEDI-----VVKTKTISPKPMDMEEAIMQMELIGHSFFVYRDTETN 157
Query: 278 EINIVYKRKAGGYGVI 293
I++ YKR GGYG+I
Sbjct: 158 LISVAYKRHDGGYGLI 173
>gi|404369856|ref|ZP_10975183.1| ribosomal subunit interface protein [Clostridium sp. 7_2_43FAA]
gi|226914017|gb|EEH99218.1| ribosomal subunit interface protein [Clostridium sp. 7_2_43FAA]
Length = 178
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 13/129 (10%)
Query: 167 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDA 226
++RAEE E +Y SIDLV + ++R++RK + K S F +L +VVE +
Sbjct: 60 ILRAEESTEDMYKSIDLVVAKLERQIRKQRTKLSRRNNESLRFPQLDEVALSDEVVETNG 119
Query: 227 DVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRK 286
E+V++K F + P++V EA+ Q+E V H+F+ +++ E ++ +VYKRK
Sbjct: 120 -------------EVVKVKRFGVKPMSVEEAVLQMELVGHNFFVYQDSEANKVCVVYKRK 166
Query: 287 AGGYGVIIP 295
G YG++ P
Sbjct: 167 DGDYGLLEP 175
>gi|347542946|ref|YP_004857583.1| SSU 30S ribosomal protein S30P [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985982|dbj|BAK81657.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 177
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 32/200 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--VRLSVRGGEFGKGPRIRRC 156
+K++ GKN+E+T +++ + +K+ K ++ RE++ V LSV + +
Sbjct: 1 MKIVTHGKNIEITHALEDIINKKLSKL---DNYFSRELEAQVTLSVEKND-------QVI 50
Query: 157 EV-TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EV LF + +RA+E +Y +IDLV + +++R+ K K +K ++ R
Sbjct: 51 EVGILFNGTY--LRAQERNSDLYVAIDLVVDKLYKQIRRQKTK------LVKKYSNKDAR 102
Query: 216 --EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ + +END + EDD IV++K F + P+ EAI Q+E + HDFY F N
Sbjct: 103 SLDILFDNIEND-----DLEDD----VIVKVKKFPIKPMYRDEAILQMELIGHDFYVFIN 153
Query: 274 EETGEINIVYKRKAGGYGVI 293
ET ++N++Y+R++G YG+I
Sbjct: 154 AETNDVNVLYRRRSGNYGLI 173
>gi|296118808|ref|ZP_06837384.1| S30AE family protein [Corynebacterium ammoniagenes DSM 20306]
gi|295968297|gb|EFG81546.1| S30AE family protein [Corynebacterium ammoniagenes DSM 20306]
Length = 217
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 35/218 (16%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR- 155
++ ++ I G+N+E+ + + V+ K+ K + +D L+ E P RR
Sbjct: 6 TAAQVTITGRNVEVPEHFSDRVKAKLAK--------IERLDPTLTFFHVELQHEPNPRRD 57
Query: 156 -----CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK---EKESDHGRHMK 207
++T K H + RAE ++ YAS++ + ++R LRK+K E R K
Sbjct: 58 AQAERIQITATGKGH-IARAEAKEDSFYASLETAVAKMERSLRKVKVRREATKSGHRARK 116
Query: 208 GFNRLKVREPVTQVVENDADVQSEEEDDNFVD------------EIVRMKFFEMPPLTVS 255
G L ++V + + ++ +D VD +IVR K P++V
Sbjct: 117 GTGEL-----AAEIVADAEAAREQQREDRMVDPYAESIEDQRPGQIVRSKEHAATPMSVD 171
Query: 256 EAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
A+ ++E V HDFY F NEET ++VY+R A YG+I
Sbjct: 172 AALSEMELVGHDFYLFINEETQRPSVVYRRHAFDYGLI 209
>gi|270290717|ref|ZP_06196941.1| sigma-54 modulation protein [Pediococcus acidilactici 7_4]
gi|418068671|ref|ZP_12705953.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Pediococcus acidilactici MA18/5M]
gi|427443992|ref|ZP_18925870.1| ribosomal subunit interface protein [Pediococcus lolii NGRI 0510Q]
gi|270280777|gb|EFA26611.1| sigma-54 modulation protein [Pediococcus acidilactici 7_4]
gi|357539407|gb|EHJ23426.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Pediococcus acidilactici MA18/5M]
gi|425786470|dbj|GAC46658.1| ribosomal subunit interface protein [Pediococcus lolii NGRI 0510Q]
Length = 184
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 108/192 (56%), Gaps = 19/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T++++++VE+++GK + V L V R + EVT+
Sbjct: 6 VRGENIEVTESIRDYVEKRIGKIEKYFDQGANPKAHVNLKVYQD------RTAKVEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YAS+DLV+ ++R++RK K K NR K RE +
Sbjct: 59 PLPYLVLRAEETSPDLYASVDLVTDKLERQIRKYKTK----------INR-KSRETGYKG 107
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
VE + E+E++ +IVR K + P+ EAI Q++ + H+F+ + + +TG ++I
Sbjct: 108 VEIPQEDAREDEEEASEFDIVRTKQVSLKPMGAEEAILQMDMLGHNFFIYEDADTGSVDI 167
Query: 282 VYKRKAGGYGVI 293
VY+R G YG+I
Sbjct: 168 VYRRHDGRYGLI 179
>gi|224543027|ref|ZP_03683566.1| hypothetical protein CATMIT_02221 [Catenibacterium mitsuokai DSM
15897]
gi|224524052|gb|EEF93157.1| ribosomal subunit interface protein [Catenibacterium mitsuokai DSM
15897]
Length = 193
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 113/197 (57%), Gaps = 25/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVL-KHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K+I++GKN+ +TD +++ + +K+ A+L K+ + ++V+ ++ +R FG ++ E
Sbjct: 16 MKVIVRGKNVTITDAIEDKITKKL--ALLDKYFIMGQDVEAKVLIRTYPFG-----QKIE 68
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVRE 216
VT+ T+ + ++RAEE ++ +Y +IDLV ++R++RK K K S ++ K FN
Sbjct: 69 VTIPTE-YVLLRAEETSDDLYEAIDLVIDKLERQIRKYKTKLSRKSKNNKLAFN------ 121
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ E+ D +V+ K P+ + EAI Q+E + H F+ +++ ET
Sbjct: 122 ---------INTLEALEEPEEEDVVVKTKTINPKPMDMEEAIMQMELIGHSFFVYKDIET 172
Query: 277 GEINIVYKRKAGGYGVI 293
+VYKR+ GGYG++
Sbjct: 173 NTACVVYKRRDGGYGLL 189
>gi|300857939|ref|YP_003782922.1| hypothetical protein cpfrc_00522 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288104|ref|YP_005122645.1| ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 3/99-5]
gi|384504119|ref|YP_005680789.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 1002]
gi|385806975|ref|YP_005843372.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 267]
gi|387136061|ref|YP_005692041.1| ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 42/02-A]
gi|392400074|ref|YP_006436674.1| ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis Cp162]
gi|300685393|gb|ADK28315.1| hypothetical protein cpfrc_00522 [Corynebacterium
pseudotuberculosis FRC41]
gi|302330219|gb|ADL20413.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 1002]
gi|348606506|gb|AEP69779.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371575393|gb|AEX38996.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383804368|gb|AFH51447.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 267]
gi|390531152|gb|AFM06881.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis Cp162]
Length = 220
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 29/212 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
V++ I G+N+E V H E+V + K + +D L+ E P RR E
Sbjct: 15 VQVSITGRNVE----VPEHFAERVNTKLAK----IARLDPTLTFFHVELQHEPNPRRAEQ 66
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES---DHGRHMKGF 209
+T K H + RAE ++ YA+++ + ++R LRK+K + S R KG
Sbjct: 67 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPKGA 125
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIEQL 261
E V + AD Q + D + D +VR K P++V +A+ ++
Sbjct: 126 GETAA-ELVHEAETARADSQYDH--DPYADSVEEVLPGRVVRHKEHPSTPMSVDDALSEM 182
Query: 262 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
E V HDFY F NEETG ++VY+R A YG+I
Sbjct: 183 ELVGHDFYMFVNEETGRPSVVYRRHAFDYGLI 214
>gi|206891020|ref|YP_002248083.1| SSU ribosomal protein S30P [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742958|gb|ACI22015.1| SSU ribosomal protein S30P [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 173
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 106/197 (53%), Gaps = 26/197 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+++T+ +K ++E++V K L + +++ +F + +V
Sbjct: 1 MKITIRGKNIDVTEALKQYIEKRVTKF---ERFLTDTSEAIVTISTEKFT-----HKIDV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
L H +++AE E +Y+++D V +++++ K KEK + + +K +
Sbjct: 53 LLKVDGH-LIQAEGKTEDLYSAVDQVVEKLEKQVLKYKEKVQNKNKK----ETIKYPSAL 107
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
++ VE IV+ K F++ P++ EA++QLE +D DF+ F N +G+
Sbjct: 108 SEEVET-------------AKRIVKYKKFDLRPMSPEEAVDQLELLDKDFFIFINSFSGD 154
Query: 279 INIVYKRKAGGYGVIIP 295
+N++YKRK G +G+I P
Sbjct: 155 VNVIYKRKDGNFGLIEP 171
>gi|315304740|ref|ZP_07874923.1| ribosome-associated factor Y [Listeria ivanovii FSL F6-596]
gi|313626884|gb|EFR95834.1| ribosome-associated factor Y [Listeria ivanovii FSL F6-596]
Length = 187
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 16/197 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ +VE+K+ K + D + V + + + EV
Sbjct: 2 LKYNIRGENIEVTEPXXXYVEKKIDKL---ERYFTETPDANVHVNLKVYSD--KNAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +YASIDL+ ++R++RK K K + R KG R
Sbjct: 57 TI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-KGAER------- 107
Query: 219 TQVVENDADVQSEEEDD--NFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+D + + ED+ +F EIVR K F + P+ EA+ Q+ + H FY + + ET
Sbjct: 108 DYFAYSDVNGSTPPEDNEGDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAET 167
Query: 277 GEINIVYKRKAGGYGVI 293
NIVY RK G YG+I
Sbjct: 168 NGTNIVYSRKDGKYGLI 184
>gi|429732014|ref|ZP_19266634.1| ribosomal subunit interface protein [Corynebacterium durum F0235]
gi|429144249|gb|EKX87368.1| ribosomal subunit interface protein [Corynebacterium durum F0235]
Length = 221
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 28/212 (13%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC--- 156
++ I G+N+E+ D V K+ K + +D L+ E P RR
Sbjct: 16 QVTITGRNVEVPDHFAERVHAKLAK--------IARLDPTLTFFHVELQHEPNPRRADES 67
Query: 157 ---EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE----SDHGRHMKGF 209
++T K H + RAE ++ YA+++ + ++R LRK+K + S H R KG
Sbjct: 68 DKIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRRISRSGH-RAPKGV 125
Query: 210 NRL------KVREPVTQVVENDADVQSEEED--DNFVDEIVRMKFFEMPPLTVSEAIEQL 261
+ V Q E DV E+ D ++VR K P++V +A+ ++
Sbjct: 126 GEVAADLVADATAAVAQQPEGKFDVDPYEDSVTDVVPGQVVRTKEHSSTPMSVDDALSEM 185
Query: 262 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
E V HDFY F NEETG ++VY+R A YG+I
Sbjct: 186 ELVGHDFYLFVNEETGRPSVVYRRHAFDYGLI 217
>gi|383313699|ref|YP_005374554.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis P54B96]
gi|384506212|ref|YP_005682881.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis C231]
gi|384508300|ref|YP_005684968.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis I19]
gi|384510394|ref|YP_005689972.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis PAT10]
gi|302205668|gb|ADL10010.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis C231]
gi|308275903|gb|ADO25802.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis I19]
gi|341824333|gb|AEK91854.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis PAT10]
gi|380869200|gb|AFF21674.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis P54B96]
Length = 222
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 29/212 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
V++ I G+N+E V H E+V + K + +D L+ E P RR E
Sbjct: 17 VQVSITGRNVE----VPEHFAERVNTKLAK----IARLDPTLTFFHVELQHEPNPRRAEQ 68
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES---DHGRHMKGF 209
+T K H + RAE ++ YA+++ + ++R LRK+K + S R KG
Sbjct: 69 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPKGA 127
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIEQL 261
E V + AD Q + D + D +VR K P++V +A+ ++
Sbjct: 128 GETAA-ELVHEAETARADSQYDH--DPYADSVEEVLPGRVVRHKEHPSTPMSVDDALSEM 184
Query: 262 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
E V HDFY F NEETG ++VY+R A YG+I
Sbjct: 185 ELVGHDFYMFVNEETGRPSVVYRRHAFDYGLI 216
>gi|309804568|ref|ZP_07698633.1| ribosomal subunit interface protein [Lactobacillus iners LactinV
09V1-c]
gi|308165960|gb|EFO68178.1| ribosomal subunit interface protein [Lactobacillus iners LactinV
09V1-c]
Length = 185
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 106/200 (53%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K ++G+N+E+TD +K++VE EK+ K S ++ V++++ + +
Sbjct: 2 LKYNVRGENIEVTDALKSYVEKRLEKLEKYFEIESDVIAHVNLKVY--------SEKSSK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAE+ + +Y SID VS ++R++RK K + NR K R
Sbjct: 54 VEVTI-PLPYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTR----------INR-KSR 101
Query: 216 EPVTQVVENDADVQSEEEDDNFVD--EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
E + D DV S ++ V +IVR K + P+ EAI Q+ + H+F+ F +
Sbjct: 102 ERGMRDFFYDTDVASGATEEKAVSGFDIVRNKHLNLKPMDAEEAILQMNMLGHNFFIFED 161
Query: 274 EETGEINIVYKRKAGGYGVI 293
+T +IVY+R G YG+I
Sbjct: 162 ADTNGTSIVYRRNDGRYGLI 181
>gi|308811250|ref|XP_003082933.1| chloroplast-specific ribosomal protein (ISS) [Ostreococcus tauri]
gi|116054811|emb|CAL56888.1| chloroplast-specific ribosomal protein (ISS) [Ostreococcus tauri]
Length = 184
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 8/114 (7%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL----VREVDVRLSVRGGEFGKGPR 152
+ VK+++QG +LE+T + +V K+G+A SH+ +REVDVR S RGGE KG
Sbjct: 48 TDVKMLVQGLHLEITPAIDEYVRSKIGRAC---SHVDSRDIREVDVRCSARGGEGSKGGV 104
Query: 153 IRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG-RH 205
+ EVT+ + + A+ E +YA+ID + I+ R +RK KEK G RH
Sbjct: 105 EHKTEVTVLMTRGPTLHADGVGENLYATIDQCADIVTRSIRKHKEKHGGKGARH 158
>gi|312867853|ref|ZP_07728058.1| ribosomal subunit interface protein [Streptococcus parasanguinis
F0405]
gi|311096608|gb|EFQ54847.1| ribosomal subunit interface protein [Streptococcus parasanguinis
F0405]
Length = 180
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 107/195 (54%), Gaps = 20/195 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K R G +L
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIEKKNRVKSGAGKL----FT 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
VVE A + ++VR K ++ P+ + EAI Q++ + HDF+ +R+ E +
Sbjct: 112 DAVVEEAATTE----------KVVRSKTIDLEPMDLDEAILQMDLLAHDFFIYRDAEDNK 161
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 162 TNVIYRREDGDIGLL 176
>gi|330718319|ref|ZP_08312919.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Leuconostoc fallax KCTC 3537]
Length = 182
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 107/191 (56%), Gaps = 19/191 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++ +V +++ K + ++ + +++R K ++ EVT+
Sbjct: 6 VRGENIEVTEAIREYVIKRLNKL---NRYIEEDAVANVNLRTYNSNKSGKV---EVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ +YA++D V ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTHADLYAAVDNVGEKLERQIRKYKTK----------INR-KSRETGYKGI 107
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
++ + +EE DD + EIVR K + P+ EA Q++ + HDF+ F + ET +N++
Sbjct: 108 DSRNEFDTEETDDEAL-EIVRTKSVGLKPMNSEEAALQMDLLGHDFFIFEDSETQSVNVI 166
Query: 283 YKRKAGGYGVI 293
YKR+ G YG++
Sbjct: 167 YKRRDGRYGLL 177
>gi|19703796|ref|NP_603358.1| sigma(54) modulation protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19713942|gb|AAL94657.1| Probable sigma(54) modulation protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 181
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATESDLYASIDKAVDIMESLLKKHKEKRS----------RAKVQDDT 105
Query: 219 -TQVVENDADVQSEEEDDNFVDE--IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+ D V+ EE+ DE +VR+ + + P+ +SEAI QLE ++ F+ F N
Sbjct: 106 RKKSYSFDYIVEPEEK---LSDEKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNTT 161
Query: 276 TGEINIVYKRKAGGYGVI 293
TG++ +VYKRK G YGVI
Sbjct: 162 TGKMAVVYKRKDGDYGVI 179
>gi|169832220|ref|YP_001718202.1| sigma 54 modulation protein/ribosomal protein S30EA [Candidatus
Desulforudis audaxviator MP104C]
gi|169639064|gb|ACA60570.1| sigma 54 modulation protein/ribosomal protein S30EA [Candidatus
Desulforudis audaxviator MP104C]
Length = 174
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 26/197 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ ++GKN+E+T ++ +VE+++ K + K H V V LSV R EV
Sbjct: 1 MRIYVRGKNIEVTPALRGYVEKRLAK-LSKFEHHFGSVQVALSVEKDS-------HRVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE +YASIDLV ++++L + K K NR V
Sbjct: 53 TVPIDGM-ILRGEEVTGDMYASIDLVVEKLEKQLERYKGKL---------LNRRPGAGGV 102
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T+ E D + IVR K F + P+ V EA+ Q+ + H F+ F N E +
Sbjct: 103 TREQETQEDEEEYR--------IVRTKRFALKPMPVDEAVMQMNLLGHSFFVFANAENQQ 154
Query: 279 INIVYKRKAGGYGVIIP 295
+N++Y+RK G YG+I P
Sbjct: 155 VNVIYRRKDGHYGLIEP 171
>gi|377832081|ref|ZP_09815045.1| ribosome-associated inhibitor protein Y [Lactobacillus mucosae LM1]
gi|377554088|gb|EHT15803.1| ribosome-associated inhibitor protein Y [Lactobacillus mucosae LM1]
Length = 180
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 104/196 (53%), Gaps = 21/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T++++++V +++ K ++ V L V + K E
Sbjct: 2 LKFNIRGENVEVTESIRDYVIKRISKLEKFFEDNVEANAHVNLKVYPNKTFK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + +RAEE + +Y SIDLV+ ++R++RK K K + R KG+ +
Sbjct: 56 VTI-PLPYLTLRAEETSSDMYGSIDLVTDKLERQIRKYKTKVNRKSRE-KGYKNMDFV-- 111
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
DV+ E D+ +IVR K + P+ EA+ Q++ + HDF+ F + ET
Sbjct: 112 --------PDVEDEPVSDDL--KIVRTKQISLKPMDPEEAVLQMDMLGHDFFVFEDAETN 161
Query: 278 EINIVYKRKAGGYGVI 293
++VY+RK G YG+I
Sbjct: 162 GTSVVYRRKDGRYGLI 177
>gi|417091490|ref|ZP_11956367.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis R61]
gi|353533098|gb|EHC02765.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis R61]
Length = 180
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 112/197 (56%), Gaps = 24/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++ +VEEKV K + K+ + +E++ ++++ K R +R +V
Sbjct: 2 IKFSIRGENLEVTDALRTYVEEKVTK-IEKYFNEEQELNAKVNL------KVYRDKRAKV 54
Query: 159 TLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVRE 216
+ V +RAE+ ++ +Y SIDLV I+R++R+ K K E H R KV
Sbjct: 55 EVTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKH--------RQKV-- 104
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
QV ++ Q+ EE ++VR K ++ P+ + EA+ QLE + HDF+ + +
Sbjct: 105 ATGQVFTDELVEQTGEEV-----KVVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDAND 159
Query: 277 GEINIVYKRKAGGYGVI 293
G N++Y+R+ G G++
Sbjct: 160 GTTNVLYRREDGDLGLL 176
>gi|335429926|ref|ZP_08556822.1| sigma 54 modulation protein/ribosomal protein S30EA [Haloplasma
contractile SSD-17B]
gi|334889008|gb|EGM27302.1| sigma 54 modulation protein/ribosomal protein S30EA [Haloplasma
contractile SSD-17B]
Length = 185
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 111/199 (55%), Gaps = 21/199 (10%)
Query: 99 VKLIIQGKN-LELTDTVKNHVEEKVGKAVLKHSHLVREVD-VRLSVRGGEFGKGPRIRRC 156
+K++I+GK+ ++T+ ++N+VE+K+ K H + D + V + ++
Sbjct: 1 MKVLIRGKDGFKITEAIRNYVEDKISKI----GHYFTDTDELEARVVCKVYNHKQKV--- 53
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ T + ++RAE+ +YA+IDLV + +++R+ K+K + RH RE
Sbjct: 54 EVTIPTNQ-ILLRAEDIEGDLYAAIDLVIDKLDKQIRRHKDKINSIYRH---------RE 103
Query: 217 PVTQVVENDADVQSEEEDDNFVDE-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
V +++ ++ E + V E +V+ K + P+TV +AI +E VDH FY F N+E
Sbjct: 104 GVANFFKSNEELDINELEAKIVGESLVKNKKVSLEPMTVDDAIMNMELVDHSFYVFLNKE 163
Query: 276 TGEINIVYKRKAG-GYGVI 293
T ++NIVYKR+ Y VI
Sbjct: 164 TDKVNIVYKREDDTDYAVI 182
>gi|366089973|ref|ZP_09456339.1| ribosome-associated factor Y [Lactobacillus acidipiscis KCTC 13900]
Length = 184
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 109/197 (55%), Gaps = 20/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--VDVRLSVRGGEFGKGPRIRRC 156
+K+ ++G+N+E+T ++ +VE+K+ K + K+ V L V + K
Sbjct: 2 LKVNVRGENIEVTAALRGYVEKKLAK-LEKYFEDTSNSTAHVNLKVYSDKNAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KG+ L+
Sbjct: 55 EVTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKHKTKINRKSRE-KGYKGLEFAS 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
PV++ E+ D + IVR K + P+ EA+ Q+E + H+F+ + + E+
Sbjct: 113 PVSEKDESKDDDDIQ---------IVRTKNIALKPMDSEEAVLQMEMLGHNFFIYEDAES 163
Query: 277 GEINIVYKRKAGGYGVI 293
+NIVY+R+ G YG+I
Sbjct: 164 QGVNIVYRRRDGRYGLI 180
>gi|386846022|ref|YP_006264035.1| sigma 54 modulation protein/ribosomal protein S30EA [Actinoplanes
sp. SE50/110]
gi|359833526|gb|AEV81967.1| sigma 54 modulation protein/ribosomal protein S30EA [Actinoplanes
sp. SE50/110]
Length = 205
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 20/208 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV +K+ K L+R VDV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHYREHVADKLSKVERYDQKLMR-VDVELF-----HERNPRQSDTCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRHMK-GFNRL 212
R E+T+ TK VVRAE A+ YA++D + + +LR+ ++ H GRH
Sbjct: 55 RVEITVMTKG-PVVRAEAQAQDFYAALDCAINKLDARLRRSADRRRVHRGRHAPVSVAAA 113
Query: 213 KVREPVTQVVENDADVQSE-------EEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVD 265
P A + +E E DD IVR K P+TV +A+ Q+E V
Sbjct: 114 TANLPTDLTRGGAATLTAEPEVDELTEHDDGQPWRIVREKEHSGEPMTVDDALFQMELVG 173
Query: 266 HDFYGFRNEETGEINIVYKRKAGGYGVI 293
HDFY F ++E+G ++VY+R+ YG++
Sbjct: 174 HDFYLFHDKESGRPSVVYRRRGYDYGIL 201
>gi|296328456|ref|ZP_06870977.1| ribosome-associated protein Y [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154422|gb|EFG95219.1| ribosome-associated protein Y [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 181
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATETDLYASIDKAVDIMESLLKKHKEKRS----------RAKVQDDT 105
Query: 219 -TQVVENDADVQSEEEDDNFVDE--IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+ D V+ EE+ DE +VR+ + + P+ +SEAI QLE ++ F+ F N
Sbjct: 106 RKKSYSFDYIVEPEEK---LSDEKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNTT 161
Query: 276 TGEINIVYKRKAGGYGVI 293
TG++ +VYKRK G YGVI
Sbjct: 162 TGKMAVVYKRKDGDYGVI 179
>gi|315653888|ref|ZP_07906804.1| ribosomal subunit interface protein [Lactobacillus iners ATCC
55195]
gi|349611784|ref|ZP_08891014.1| hypothetical protein HMPREF1027_00441 [Lactobacillus sp. 7_1_47FAA]
gi|315488584|gb|EFU78230.1| ribosomal subunit interface protein [Lactobacillus iners ATCC
55195]
gi|348608249|gb|EGY58234.1| hypothetical protein HMPREF1027_00441 [Lactobacillus sp. 7_1_47FAA]
Length = 185
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 106/200 (53%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K ++G+N+E+TD +K++VE EK+ K S ++ V++++ + +
Sbjct: 2 LKYNVRGENIEVTDALKSYVEKRLEKLEKYFEIESDVIAHVNLKVY--------SEKSSK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAE+ + +Y SID VS ++R++RK K + NR K R
Sbjct: 54 VEVTI-PLPYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTR----------INR-KSR 101
Query: 216 EPVTQVVENDADVQSEEEDDNFVD--EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
E + D DV S ++ V +IVR K + P+ EAI Q+ + H+F+ F +
Sbjct: 102 ERGMRDFFYDTDVASVATEEKAVSGFDIVRNKHLNLKPMDAEEAILQMNMLGHNFFIFED 161
Query: 274 EETGEINIVYKRKAGGYGVI 293
+T +IVY+R G YG+I
Sbjct: 162 ADTNGTSIVYRRNDGRYGLI 181
>gi|312864930|ref|ZP_07725160.1| ribosomal subunit interface protein [Streptococcus downei F0415]
gi|311099550|gb|EFQ57764.1| ribosomal subunit interface protein [Streptococcus downei F0415]
Length = 182
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 113/195 (57%), Gaps = 17/195 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++++VE K+ K + K+ + +E++ +++++ + + EV
Sbjct: 2 IKFSIRGENIEVTDAIRSYVESKLAK-IEKYFNPAQELNAKVNLKVYR----KKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLVS I+R++RK K K + +H RE V
Sbjct: 57 TIPVDSI-TLRAEDVSQDLYGSIDLVSDKIERQIRKNKTKIA--KKH---------REKV 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
A+ +EE ++ +IVR K ++ P+ EAI Q++ + HDF+ + + E G
Sbjct: 105 ATGEVFSAEFVAEEVEEAPEPKIVRTKNVDLKPMDAEEAILQMDLLGHDFFIYTDAEDGT 164
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G +G+I
Sbjct: 165 TNVIYRREDGDFGLI 179
>gi|29831610|ref|NP_826244.1| hypothetical protein SAV_5067 [Streptomyces avermitilis MA-4680]
gi|29608726|dbj|BAC72779.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Streptomyces avermitilis MA-4680]
Length = 286
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 25/215 (11%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
V ++++G+ E+ + + HV EK+ + + K V +DV +S + R R
Sbjct: 56 CVDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVSKEPNPR-QADRCDRV 114
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
E+TL ++ V+RAE A YA++DL + ++ +LRK E + H R +G RL +
Sbjct: 115 EITLRSRGP-VIRAEAAASDPYAALDLAADKLEARLRK--EHDKRHTR--RGAGRLSAAD 169
Query: 217 -----PVTQVVENDADVQSEEEDDNFVDE-------------IVRMKFFEMPPLTVSEAI 258
P + + SE E D + +VR K P+++ +A+
Sbjct: 170 VADTVPGAATLNGSGGIVSEAESDGIPTKKIGSLEVKGEGPLVVREKTHVASPMSLDQAL 229
Query: 259 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 230 YEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 264
>gi|167756742|ref|ZP_02428869.1| hypothetical protein CLORAM_02289 [Clostridium ramosum DSM 1402]
gi|237734461|ref|ZP_04564942.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|365832378|ref|ZP_09373911.1| ribosomal subunit interface protein [Coprobacillus sp. 3_3_56FAA]
gi|374625857|ref|ZP_09698273.1| ribosomal subunit interface protein [Coprobacillus sp. 8_2_54BFAA]
gi|167702917|gb|EDS17496.1| ribosomal subunit interface protein [Clostridium ramosum DSM 1402]
gi|229382281|gb|EEO32372.1| conserved hypothetical protein [Coprobacillus sp. D7]
gi|365260323|gb|EHM90280.1| ribosomal subunit interface protein [Coprobacillus sp. 3_3_56FAA]
gi|373915517|gb|EHQ47288.1| ribosomal subunit interface protein [Coprobacillus sp. 8_2_54BFAA]
Length = 176
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 109/196 (55%), Gaps = 25/196 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKN+E+T+ ++ + EK+ K + K+ + V+ ++ R +G+ + EV
Sbjct: 1 MKISVRGKNIEITEAIEAKISEKLSK-LDKYFIVSDNVEAKVLCRVYPYGQ-----KLEV 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVREP 217
T+ T+ + ++RAE + +Y ++DLV ++ ++RK K + S + K FN +
Sbjct: 55 TIPTE-YVLLRAEVVDDDLYNAMDLVVDKLEGQIRKYKTRLSRKSKDNKLAFNLSSIE-- 111
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
DV+SEE D +V++K P+ + EAI Q+E + H F+ +R+ E+
Sbjct: 112 ---------DVESEE------DVLVKVKSITPKPMDMEEAIMQMELIGHSFFVYRDVESD 156
Query: 278 EINIVYKRKAGGYGVI 293
I+IVY+R G YG+I
Sbjct: 157 SISIVYRRNDGDYGLI 172
>gi|51891261|ref|YP_073952.1| 30S ribosomal protein S30AE [Symbiobacterium thermophilum IAM
14863]
gi|51854950|dbj|BAD39108.1| 30S ribosomal protein S30AE family [Symbiobacterium thermophilum
IAM 14863]
Length = 178
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 106/199 (53%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ ++GKN+E+T ++ +VE+K+GK H ++ L V G R +
Sbjct: 1 MQVAVRGKNIEITKALREYVEKKLGKIEKFVDHPIK-AQANLYVERG---------RHII 50
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ +G ++R EE +YASIDLV+ +++++++ + + P
Sbjct: 51 EVTADLNGWILRGEEATGDMYASIDLVADKLEKQVQRYRARLR--------RRGGAGASP 102
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V A + + D ++V++K F + P+TV EAI Q++ + HDF+ F N +TG
Sbjct: 103 EAAV----AGAEDQGVDAELDGKVVKVKRFPVKPVTVDEAILQMDLLSHDFFVFVNSDTG 158
Query: 278 EINIVYKRKAGGYGVIIPK 296
++N++Y+R G YG+++P+
Sbjct: 159 KVNVLYRRHDGDYGLLVPE 177
>gi|379714805|ref|YP_005303142.1| ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 316]
gi|386739867|ref|YP_006213047.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 31]
gi|387138126|ref|YP_005694105.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|387140144|ref|YP_005696122.1| ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 1/06-A]
gi|389849872|ref|YP_006352107.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 258]
gi|349734604|gb|AEQ06082.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|355391935|gb|AER68600.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 1/06-A]
gi|377653511|gb|AFB71860.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 316]
gi|384476561|gb|AFH90357.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 31]
gi|388247178|gb|AFK16169.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 258]
Length = 220
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 29/212 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
V++ I G+N+E V H E+V + K + +D L+ E P RR E
Sbjct: 15 VQVSITGRNVE----VPEHFAERVNTKLAK----IARLDPTLTFFHVELQHEPNPRRAEQ 66
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES---DHGRHMKGF 209
+T K H + RAE ++ YA+++ + ++R LRK+K + S R KG
Sbjct: 67 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPKGA 125
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVD--------EIVRMKFFEMPPLTVSEAIEQL 261
E V + AD Q + D + D +VR K P++V +A+ ++
Sbjct: 126 GETAA-ELVHEAETARADSQYDH--DPYADSVEEVLPGRVVRDKEHPSTPMSVDDALSEM 182
Query: 262 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
E V HDFY F NEETG ++VY+R A YG+I
Sbjct: 183 ELVGHDFYMFVNEETGRPSVVYRRHAFDYGLI 214
>gi|291518130|emb|CBK73351.1| Sigma 54 modulation protein / S30EA ribosomal protein [Butyrivibrio
fibrisolvens 16/4]
Length = 122
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 13/133 (9%)
Query: 164 KHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVE 223
K +RAEE +YASI+ V++ ++ +L+K + K D R + ++ + + V
Sbjct: 2 KGSYLRAEEVTSDMYASIEAVTNTLEAQLKKHRNKIID--RKQSDSRVIFAQDFIEEKVA 59
Query: 224 NDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVY 283
++ +Q I+R K F+M P+ +A ++E + HDF+ FRN +T EIN+VY
Sbjct: 60 DEEKIQ-----------IIRTKKFDMKPMYAEDACLEMEMLGHDFFMFRNADTDEINVVY 108
Query: 284 KRKAGGYGVIIPK 296
KRK G YG+I P+
Sbjct: 109 KRKNGAYGLIEPE 121
>gi|168177504|ref|ZP_02612168.1| ribosomal subunit interface protein [Clostridium botulinum NCTC
2916]
gi|226947394|ref|YP_002802485.1| ribosomal subunit interface protein [Clostridium botulinum A2 str.
Kyoto]
gi|421839231|ref|ZP_16272863.1| ribosomal subunit interface protein [Clostridium botulinum
CFSAN001627]
gi|182671065|gb|EDT83039.1| ribosomal subunit interface protein [Clostridium botulinum NCTC
2916]
gi|226841492|gb|ACO84158.1| ribosomal subunit interface protein [Clostridium botulinum A2 str.
Kyoto]
gi|409735365|gb|EKN36955.1| ribosomal subunit interface protein [Clostridium botulinum
CFSAN001627]
Length = 175
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + GKN+E+T+ ++ VE+K+ K + V LSV + + EV
Sbjct: 1 MKITVIGKNIEITNALRETVEKKLSKLERFFNPDVV-ATATLSVHKNK-------QTIEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HGV+ R EE E +YASID+V ++ ++RK K K + G R +
Sbjct: 53 TI--PFHGVILRGEETTEDMYASIDMVIDKLEGQVRKQKTKL--QRKIHDGSLRFQY--- 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ E +N +IV+ K F M P++ EA+ Q+E + H+F+ ++N +T
Sbjct: 106 ----------IPDYESGENKETQIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNADTE 155
Query: 278 EINIVYKRKAGGYGVIIPK 296
E+N++Y+RK G YG+I P+
Sbjct: 156 EVNVIYRRKDGNYGLIEPE 174
>gi|134300910|ref|YP_001114406.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum reducens MI-1]
gi|134053610|gb|ABO51581.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Desulfotomaculum reducens MI-1]
Length = 173
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 108/198 (54%), Gaps = 26/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKN+++T ++++VE+++GK + + + E L V G + EV
Sbjct: 1 MKVQVRGKNIQVTPALRDYVEKRLGK-LDRFLENMGEAIATLVVEG-------ETHKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE E +Y+++D V ++R++ + K K + R +G L V
Sbjct: 53 TIPINGM-ILRGEEATEEMYSAVDNVVEKMERQIERYKGK--INRRDNRGIADLGV---- 105
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
VVE D++ E ++++ K F + P+ + EAI Q+ + HDF+ F N ET +
Sbjct: 106 --VVE---DMEDE------TPQVIKTKRFAIKPMALDEAIMQMNLLGHDFFVFSNAETEQ 154
Query: 279 INIVYKRKAGGYGVIIPK 296
N++YKRK G YG+I P+
Sbjct: 155 TNVIYKRKDGNYGLIEPE 172
>gi|452851253|ref|YP_007492937.1| Sigma 54 modulation protein/ribosomal protein S30EA [Desulfovibrio
piezophilus]
gi|451894907|emb|CCH47786.1| Sigma 54 modulation protein/ribosomal protein S30EA [Desulfovibrio
piezophilus]
Length = 179
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 27/196 (13%)
Query: 106 KNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
KN E +D +K + + EK+GK V E D+++++ +F R +
Sbjct: 8 KNFEPSDHLKGYAQKRFEKIGKFVPD-----SEADLQVNLLVEKF------RHKADVILN 56
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ + A ED+E +Y++ID+V ++ +LR+++EK + + +G N++++
Sbjct: 57 ADNIHISAYEDSEDMYSTIDMVLDKLEAQLRRMREKVKNRSKQARG-NKVQM-----NFF 110
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
D DV E + IV +E P+++ EA EQL D++F F N ET ++N++
Sbjct: 111 SYD-DVTGEH-----IPTIVGTDSYEAKPMSIDEAAEQLNTFDNEFLVFLNAETEDVNVI 164
Query: 283 YKRKAGGYGVIIPKGN 298
YKRK G YG+I P GN
Sbjct: 165 YKRKNGDYGLIDP-GN 179
>gi|326804107|ref|YP_004321925.1| ribosomal subunit interface protein [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650373|gb|AEA00556.1| ribosomal subunit interface protein [Aerococcus urinae
ACS-120-V-Col10a]
Length = 189
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 106/191 (55%), Gaps = 16/191 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++++ E K+ K + K+ + V ++ + + G+ + EVT+
Sbjct: 6 VRGENIEITPAIRDYAENKISK-IEKYFKDAPDTTVYVNAKVYQNGEA----KAEVTVPL 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ +RAEE ++ +Y SIDLV ++R+++K K + + R KG + +
Sbjct: 61 PRL-TLRAEETSQDLYGSIDLVVDKLERQVKKYKTRINRKSRE-KGISDV-------MFT 111
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
EN+ + ++ D N EIVR K + P++ EA+ Q+E + H F+ + + E+ +++V
Sbjct: 112 ENNQEDSKDDNDSNI--EIVRTKSIAVKPMSAEEAVLQMEMLGHSFFIYEDAESESVSLV 169
Query: 283 YKRKAGGYGVI 293
YKR G YG+I
Sbjct: 170 YKRHNGKYGLI 180
>gi|337281493|ref|YP_004620964.1| ribosomal subunit interface protein [Streptococcus parasanguinis
ATCC 15912]
gi|387878772|ref|YP_006309075.1| ribosomal subunit interface protein [Streptococcus parasanguinis
FW213]
gi|417917996|ref|ZP_12561550.1| ribosomal subunit interface protein [Streptococcus parasanguinis
SK236]
gi|419800675|ref|ZP_14325944.1| ribosomal subunit interface protein [Streptococcus parasanguinis
F0449]
gi|335369086|gb|AEH55036.1| ribosomal subunit interface protein [Streptococcus parasanguinis
ATCC 15912]
gi|342829311|gb|EGU63669.1| ribosomal subunit interface protein [Streptococcus parasanguinis
SK236]
gi|385694406|gb|EIG25012.1| ribosomal subunit interface protein [Streptococcus parasanguinis
F0449]
gi|386792229|gb|AFJ25264.1| ribosomal subunit interface protein [Streptococcus parasanguinis
FW213]
Length = 180
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 106/195 (54%), Gaps = 20/195 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K R G +L
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIEKKNRVKSGAGKL-----F 110
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T V +A +++VR K ++ P+ + EAI Q++ + HDF+ +R+ E
Sbjct: 111 TDAVVEEA---------TTTEKVVRSKTIDLEPMDIDEAILQMDLLAHDFFIYRDAEDNT 161
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 162 TNVIYRREDGDIGLL 176
>gi|322390989|ref|ZP_08064494.1| ribosomal subunit interface protein [Streptococcus parasanguinis
ATCC 903]
gi|321142293|gb|EFX37766.1| ribosomal subunit interface protein [Streptococcus parasanguinis
ATCC 903]
Length = 180
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 106/195 (54%), Gaps = 20/195 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K R G +L
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIEKKNRIKSGAGKL----FT 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
VVE A + ++VR K ++ P+ + EAI Q++ + HDF+ +R+ E
Sbjct: 112 DAVVEEAATTE----------KVVRSKTIDLEPMDLDEAILQMDLLAHDFFIYRDAEDNT 161
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 162 TNVIYRREDGDIGLL 176
>gi|209559755|ref|YP_002286227.1| ribosomal subunit Interface protein [Streptococcus pyogenes NZ131]
gi|209540956|gb|ACI61532.1| Ribosomal subunit interface protein [Streptococcus pyogenes NZ131]
Length = 182
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 107/195 (54%), Gaps = 17/195 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ R + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFAKDQEIDARVNLKVYR----ERSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ + +Y SI LV I+R++RK K K + R + P
Sbjct: 57 TI-PLDSVTLRAEDVSXDMYGSIXLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
QV + ++EE D+ ++VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 GQVF--TTEFEAEEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEBGA 164
Query: 279 INIVYKRKAGGYGVI 293
NI+Y+R+ G G+I
Sbjct: 165 TNILYRREDGNLGLI 179
>gi|148543600|ref|YP_001270970.1| sigma 54 modulation protein/30S ribosomal protein S30P
[Lactobacillus reuteri DSM 20016]
gi|184153008|ref|YP_001841349.1| ribosomal subunit interface protein [Lactobacillus reuteri JCM
1112]
gi|227363438|ref|ZP_03847562.1| ribosome-associated inhibitor protein Y [Lactobacillus reuteri
MM2-3]
gi|227545123|ref|ZP_03975172.1| ribosome-associated inhibitor protein Y [Lactobacillus reuteri
CF48-3A]
gi|325681953|ref|ZP_08161471.1| ribosomal subunit interface protein [Lactobacillus reuteri MM4-1A]
gi|338203928|ref|YP_004650073.1| ribosomal subunit interface protein [Lactobacillus reuteri SD2112]
gi|148530634|gb|ABQ82633.1| SSU ribosomal protein S30P [Lactobacillus reuteri DSM 20016]
gi|183224352|dbj|BAG24869.1| ribosomal subunit interface protein [Lactobacillus reuteri JCM
1112]
gi|227071538|gb|EEI09837.1| ribosome-associated inhibitor protein Y [Lactobacillus reuteri
MM2-3]
gi|227184911|gb|EEI64982.1| ribosome-associated inhibitor protein Y [Lactobacillus reuteri
CF48-3A]
gi|324978597|gb|EGC15546.1| ribosomal subunit interface protein [Lactobacillus reuteri MM4-1A]
gi|336449168|gb|AEI57783.1| ribosomal subunit interface protein [Lactobacillus reuteri SD2112]
Length = 182
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 109/202 (53%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+E+T++++++V +++ K +V +H V L V
Sbjct: 2 LKFNIRGENVEVTESIRDYVVKRISKLQKFFEDSVEATAH------VNLKVYPN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y SIDLV+ ++R++RK K K + R KG
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSIDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
L + + +D D ++ +DD +IVR K + P+ EA+ Q++ + H+F+ F
Sbjct: 108 L-------EFIPSDND-GTDGQDDEL--KIVRTKQVSLKPMDPEEAVLQMDMLGHNFFIF 157
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
++ ET +IVY+R G YG+I
Sbjct: 158 QDAETNGTSIVYRRNDGRYGLI 179
>gi|420151290|ref|ZP_14658414.1| ribosomal subunit interface protein [Actinomyces georgiae F0490]
gi|394771831|gb|EJF51553.1| ribosomal subunit interface protein [Actinomyces georgiae F0490]
Length = 217
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 29/217 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K + R +DV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFRQYVEEKVSKVTQFYPRAQR-IDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRLK 213
R E+T++ K ++RAE + YA++D+ + + +LR+++++ DH R + + +
Sbjct: 55 RIELTVYGKG-PIIRAEAKSADRYAAVDIAAGKLYERLRRLRDRAKDHRRGYARDLTDTE 113
Query: 214 VRE-PVTQVVENDADVQS--------------EEEDDNFVDE--IVRMKFFEMPPLTVSE 256
V E PV E ++ E ++ + D IVR K E PP+TV E
Sbjct: 114 VLEAPVLPKQEESPAEEAAPKPLRSAEDLKVGEAREEQWGDSPIIVRQKVHEAPPMTVDE 173
Query: 257 AIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
A++Q+ V H F+ F ++ET + +VY R YGV+
Sbjct: 174 ALDQMMMVGHPFFLFVDKETRQPCVVYHRHGWTYGVL 210
>gi|300173965|ref|YP_003773131.1| ribosome-associated factor Y [Leuconostoc gasicomitatum LMG 18811]
gi|333445851|ref|ZP_08480793.1| ribosome-associated factor Y [Leuconostoc inhae KCTC 3774]
gi|299888344|emb|CBL92312.1| Ribosome-associated factor Y [Leuconostoc gasicomitatum LMG 18811]
Length = 182
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 111/191 (58%), Gaps = 19/191 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+ +TD ++ +VE+++ K + ++ + +++R K + EVT+
Sbjct: 6 VRGENIAVTDALREYVEKRLTKL---NRYIEEKSSANVNLRTY---KSDNSGKVEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ +YA++D VS ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTNPDLYAAVDAVSEKLERQIRKYKTK----------INR-KSRETGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+++ ++ + E DD+ + +IVR K ++ P++ EA Q++ ++H F+ F++ ET +++
Sbjct: 108 DSNDEIPASEVDDDAL-QIVRTKQVDLKPMSPEEAALQMDLLEHSFFIFKDAETNTDSVI 166
Query: 283 YKRKAGGYGVI 293
YKR+ G YG++
Sbjct: 167 YKRQDGKYGLL 177
>gi|146318094|ref|YP_001197806.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis 05ZYH33]
gi|146320273|ref|YP_001199984.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis 98HAH33]
gi|386577393|ref|YP_006073798.1| Sigma 54 modulation protein [Streptococcus suis GZ1]
gi|145688900|gb|ABP89406.1| Ribosome-associated protein Y (PSrp-1) [Streptococcus suis 05ZYH33]
gi|145691079|gb|ABP91584.1| Ribosome-associated protein Y (PSrp-1) [Streptococcus suis 98HAH33]
gi|292557855|gb|ADE30856.1| Sigma 54 modulation protein [Streptococcus suis GZ1]
Length = 192
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 112/197 (56%), Gaps = 24/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++ +VEEKV K + K+ + +E++ ++++ K R +R +V
Sbjct: 14 IKFSIRGENLEVTEALRTYVEEKVAK-IEKYFNEEQELNAKVNL------KVYRDKRAKV 66
Query: 159 TLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVRE 216
+ V +RAE+ ++ +Y SIDLV I+R++R+ K K E H R KV
Sbjct: 67 EVTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKH--------RQKV-- 116
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
QV ++ Q+ EE ++VR K ++ P+ + EA+ QLE + HDF+ + +
Sbjct: 117 ATGQVFTDELVEQTGEEV-----KVVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDAND 171
Query: 277 GEINIVYKRKAGGYGVI 293
G N++Y+R+ G G++
Sbjct: 172 GTTNVLYRREDGDLGLL 188
>gi|259501052|ref|ZP_05743954.1| ribosomal subunit interface protein [Lactobacillus iners DSM 13335]
gi|302190499|ref|ZP_07266753.1| ribosome-associated protein Y [Lactobacillus iners AB-1]
gi|309803084|ref|ZP_07697183.1| ribosomal subunit interface protein [Lactobacillus iners LactinV
11V1-d]
gi|309808693|ref|ZP_07702583.1| ribosomal subunit interface protein [Lactobacillus iners LactinV
01V1-a]
gi|309810018|ref|ZP_07703865.1| ribosomal subunit interface protein [Lactobacillus iners SPIN
2503V10-D]
gi|312870686|ref|ZP_07730794.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
3008A-a]
gi|312872612|ref|ZP_07732680.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
2062A-h1]
gi|312874362|ref|ZP_07734393.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
2052A-d]
gi|312874720|ref|ZP_07734739.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
2053A-b]
gi|325911467|ref|ZP_08173879.1| ribosomal subunit interface protein [Lactobacillus iners UPII
143-D]
gi|325913182|ref|ZP_08175552.1| ribosomal subunit interface protein [Lactobacillus iners UPII 60-B]
gi|329920467|ref|ZP_08277199.1| ribosomal subunit interface protein [Lactobacillus iners SPIN
1401G]
gi|259167746|gb|EEW52241.1| ribosomal subunit interface protein [Lactobacillus iners DSM 13335]
gi|308164865|gb|EFO67113.1| ribosomal subunit interface protein [Lactobacillus iners LactinV
11V1-d]
gi|308168054|gb|EFO70182.1| ribosomal subunit interface protein [Lactobacillus iners LactinV
01V1-a]
gi|308169658|gb|EFO71704.1| ribosomal subunit interface protein [Lactobacillus iners SPIN
2503V10-D]
gi|311089465|gb|EFQ47890.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
2053A-b]
gi|311090128|gb|EFQ48541.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
2052A-d]
gi|311091974|gb|EFQ50350.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
2062A-h1]
gi|311093797|gb|EFQ52133.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
3008A-a]
gi|325476817|gb|EGC79971.1| ribosomal subunit interface protein [Lactobacillus iners UPII
143-D]
gi|325477603|gb|EGC80745.1| ribosomal subunit interface protein [Lactobacillus iners UPII 60-B]
gi|328936143|gb|EGG32596.1| ribosomal subunit interface protein [Lactobacillus iners SPIN
1401G]
Length = 185
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 106/200 (53%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K ++G+N+E+TD +K++VE EK+ K S ++ V++++ + +
Sbjct: 2 LKYNVRGENIEVTDALKSYVEKRLEKLEKYFEIESDVIAHVNLKVY--------SEKSSK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAE+ + +Y SID VS ++R++RK K + NR K R
Sbjct: 54 VEVTI-PLPYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTR----------INR-KSR 101
Query: 216 EPVTQVVENDADVQSEEEDDNFVD--EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
E + D DV S ++ V +IVR K + P+ EAI Q+ + H+F+ F +
Sbjct: 102 ERGMRDFFYDTDVVSGATEEKAVSGFDIVRNKHLNLKPMDAEEAILQMNMLGHNFFIFED 161
Query: 274 EETGEINIVYKRKAGGYGVI 293
+T +IVY+R G YG+I
Sbjct: 162 ADTNGTSIVYRRNDGRYGLI 181
>gi|329117365|ref|ZP_08246082.1| ribosomal subunit interface protein [Streptococcus parauberis NCFD
2020]
gi|333905476|ref|YP_004479347.1| sigma-54 modulation protein / S30EA ribosomal protein
[Streptococcus parauberis KCTC 11537]
gi|326907770|gb|EGE54684.1| ribosomal subunit interface protein [Streptococcus parauberis NCFD
2020]
gi|333120741|gb|AEF25675.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus parauberis KCTC 11537]
gi|456369402|gb|EMF48302.1| Ribosomal subunit interface protein [Streptococcus parauberis
KRS-02109]
gi|457094751|gb|EMG25264.1| Ribosomal subunit interface protein [Streptococcus parauberis
KRS-02083]
Length = 182
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 107/198 (54%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I+G+N+E+T+ ++++VE K+ K + K+ E+D R++++ + + EV
Sbjct: 2 IRFSIRGENIEVTEAIRDYVESKLSK-IEKYFVEDNEIDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TIILGSM-TLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KMPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
QV + + + EE +VR K + P+ + EA Q+E + HDFY + + E GE
Sbjct: 107 GQVFTTEFEAEEVEETPEI--RVVRTKNVTLKPMDIEEARLQMELLGHDFYIYTDAENGE 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++YKR+ G G+I K
Sbjct: 165 TNVLYKREDGDLGLIEAK 182
>gi|403667839|ref|ZP_10933139.1| hypothetical protein KJC8E_03657 [Kurthia sp. JC8E]
Length = 186
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 13/191 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE K+ K + E+D +V + + + EVT+
Sbjct: 6 IRGENIEVTPAIREYVESKLSKL---ERYFNNEMDATANVNLKTYN--DKRTKVEVTIPM 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE + +Y +D + + ++R++RK K K + R +G P +
Sbjct: 61 KRL-TLRAEERNDDLYTGVDAIVAKLERQIRKHKTKINRKFREREGVGVYFATVPSQETE 119
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
A+ + E E IVR K F + P+ EAI Q+ + HDF+ F + E+ E NIV
Sbjct: 120 AVQAEQEEELE-------IVRTKQFSLKPMDDEEAILQMNLLGHDFFIFTDSESNETNIV 172
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 173 YRRKDGKYGLI 183
>gi|294102171|ref|YP_003554029.1| sigma 54 modulation protein/ribosomal protein S30EA [Aminobacterium
colombiense DSM 12261]
gi|293617151|gb|ADE57305.1| sigma 54 modulation protein/ribosomal protein S30EA [Aminobacterium
colombiense DSM 12261]
Length = 179
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 104/195 (53%), Gaps = 28/195 (14%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
+N + D +++++ EKV K R +D ++ V FG+G + E+T +
Sbjct: 7 ARNAVIDDELRSYMREKVSKL---GKFFNRILDNQVLV---SFGRG--MHNVEIT--SNA 56
Query: 165 HGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PVTQ 220
+GV+ R+EE A + + D I+R++++ H ++K L+ R+ +
Sbjct: 57 NGVIMRSEESAPDMRKAFDKALKNIERQIKR-------HNDYLKDRALLRTRDISFNLEG 109
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
VE + + +EEE IV+ K F + P+T EA Q+E + H+F+ F+N ETG +N
Sbjct: 110 FVETEPLLPAEEE-------IVKTKRFPLRPMTAKEATMQMELLGHEFFLFKNVETGLVN 162
Query: 281 IVYKRKAGGYGVIIP 295
+VYKRK GG+G+I P
Sbjct: 163 VVYKRKNGGFGLIEP 177
>gi|414564606|ref|YP_006043567.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus equi subsp. zooepidemicus ATCC 35246]
gi|338847671|gb|AEJ25883.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus equi subsp. zooepidemicus ATCC 35246]
Length = 182
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 109/198 (55%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R +
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KMST 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+QV ++ + + EE ++VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 SQVFTSEFEAEQAEETPEI--KVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDAEDGA 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++Y+R+ G G+I K
Sbjct: 165 TNVLYRREDGDLGLIEAK 182
>gi|225871014|ref|YP_002746961.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus equi subsp. equi 4047]
gi|225700418|emb|CAW94798.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus equi subsp. equi 4047]
Length = 182
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 109/198 (55%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R +
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KMST 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+QV ++ + + EE ++VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 SQVFTSEFEAEKAEETPEI--KVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDAEDGA 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++Y+R+ G G+I K
Sbjct: 165 TNVLYRREDGDLGLIEAK 182
>gi|297571962|ref|YP_003697736.1| ribosomal subunit interface protein [Arcanobacterium haemolyticum
DSM 20595]
gi|296932309|gb|ADH93117.1| ribosomal subunit interface protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 222
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 18/210 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ +++G+N E++D + VEEK+ K + + + + V+V ++ + R E+
Sbjct: 1 MEFVVKGRNAEVSDNFREFVEEKLAK-IEQFAPRAQRVEVEVTHEPNP-AQAEISERIEI 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH------------- 205
T+ K VVRAE A Y ++DL + + +LR+ EK D H
Sbjct: 59 TV-RDKGPVVRAEAAASDRYGAVDLAAQKLFERLRRKSEKMKDRKHHAVKDVPAGELNVD 117
Query: 206 --MKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLEN 263
M KV EP + A ++ E +VR K +E P++V +A++++E
Sbjct: 118 ELMAEVKSAKVEEPAEEPTRPTAVGEAVETQVGDSPVVVRQKLYEAKPMSVEQAVDEMEL 177
Query: 264 VDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
V H F+ F +EET + Y+R+ YGVI
Sbjct: 178 VGHPFFLFIDEETSQPCAAYRRRGWTYGVI 207
>gi|212697030|ref|ZP_03305158.1| hypothetical protein ANHYDRO_01595 [Anaerococcus hydrogenalis DSM
7454]
gi|212675805|gb|EEB35412.1| hypothetical protein ANHYDRO_01595 [Anaerococcus hydrogenalis DSM
7454]
Length = 176
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 22/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I+GKN+ + +++K +EK + + K+ + E+D++ S G ++ E
Sbjct: 1 MKLNIKGKNINVYESLKEEAKEKFDR-LDKYFNKEEEMDLKFSTEGN-------FKKVES 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F K ++RAEE E ID V + R++RK K K + R +
Sbjct: 53 TIFLKGGTILRAEEVNEDFSTGIDKVIDALVRQIRKQKTKLQRNRRSGESIK-------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
E+ V E+EDD I R K + P++ EA Q+E ++HDF+ + +++ +
Sbjct: 105 ---FESFDKVDEEKEDDPI---IKREKEILLRPMSDEEACMQMELLNHDFFLYLDDQDMK 158
Query: 279 INIVYKRKAGGYGVIIP 295
+VYKRK G YG+IIP
Sbjct: 159 TRLVYKRKDGHYGLIIP 175
>gi|227510663|ref|ZP_03940712.1| ribosome-associated inhibitor protein Y [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227513678|ref|ZP_03943727.1| ribosome-associated inhibitor protein Y [Lactobacillus buchneri
ATCC 11577]
gi|227524823|ref|ZP_03954872.1| ribosome-associated inhibitor protein Y [Lactobacillus hilgardii
ATCC 8290]
gi|227083089|gb|EEI18401.1| ribosome-associated inhibitor protein Y [Lactobacillus buchneri
ATCC 11577]
gi|227088038|gb|EEI23350.1| ribosome-associated inhibitor protein Y [Lactobacillus hilgardii
ATCC 8290]
gi|227190315|gb|EEI70382.1| ribosome-associated inhibitor protein Y [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 194
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 16/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T ++++VE++V K + V L V + K EVT+
Sbjct: 13 IRGENIEVTQAIRDYVEKRVSKLEKYFEKDMKNTAHVNLRVYPDKQAK------VEVTI- 65
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+RAEE + +YAS+DLV+ ++R++RK K K + R KGF L +
Sbjct: 66 PLPFLTLRAEELSNDLYASVDLVTDKLERQIRKYKTKVNRKSRE-KGFKNL-------EF 117
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
V ND S+ +D+ ++VR K + P+ EAI Q++ + HDF+ + + +T I+I
Sbjct: 118 VPNDDQTTSDSDDNQSQFDVVRTKRLALKPMDNEEAILQMDMLGHDFFIYEDADTSNIDI 177
Query: 282 VYKRKAGGYGVI 293
VY+R G YG+I
Sbjct: 178 VYRRNDGRYGLI 189
>gi|442318119|ref|YP_007358140.1| ribosomal subunit interface protein [Myxococcus stipitatus DSM
14675]
gi|441485761|gb|AGC42456.1| ribosomal subunit interface protein [Myxococcus stipitatus DSM
14675]
Length = 220
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 30/154 (19%)
Query: 167 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGR----HMKGF-NRLKVRE---- 216
V+R + ++ +YASIDL I+R+LR+ ++K ++ HGR H + N LKVR
Sbjct: 60 VLRGRDKSDDMYASIDLAMDKIERQLRRYRDKLKTHHGRERVHHRQDLVNHLKVRHAVFE 119
Query: 217 ---------------PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQL 261
PV +VVE+ A + +VR + PL+V EA+ Q+
Sbjct: 120 VPDAEEPAAKPTPEAPVAKVVESAASTPI-----SAATRVVRATQLTVKPLSVDEAVMQM 174
Query: 262 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIP 295
+++DFY F N E+ + I+Y+RK G YG+I P
Sbjct: 175 NLMNNDFYVFHNVESDALGIIYRRKDGQYGLIEP 208
>gi|313673389|ref|YP_004051500.1| sigma 54 modulation protein/ribosomal protein s30ea
[Calditerrivibrio nitroreducens DSM 19672]
gi|312940145|gb|ADR19337.1| sigma 54 modulation protein/ribosomal protein S30EA
[Calditerrivibrio nitroreducens DSM 19672]
Length = 178
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 25/196 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I GKN+ELTD ++++VE+KV + + K+ V +V V L V+ + E+ L
Sbjct: 5 ITGKNIELTDAIRSYVEKKVSR-LKKYFEQVLDVQVILDVQKN-------VHLAEI-LVN 55
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR---LKVREPVT 219
K ++ E +E +YASIDL I+R+L K KEK K F + L + E +
Sbjct: 56 AKGVFLKGLEKSEDLYASIDLSVDKIERQLVKYKEKLKTKKLMEKDFEKPLTLNIYEH-S 114
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
VVE DA +I+ K + P+ V EA+ Q++ ++ +F+ FRN +GE+
Sbjct: 115 SVVEKDAP------------QIIVSKQIPVKPMDVEEAVMQMDLLNKNFFVFRNASSGEV 162
Query: 280 NIVYKRKAGGYGVIIP 295
++VY+R G G+I P
Sbjct: 163 SVVYRRDDGNIGLIEP 178
>gi|188997628|ref|YP_001931879.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188932695|gb|ACD67325.1| sigma 54 modulation protein/ribosomal protein S30EA
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 187
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 32/203 (15%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDV-----RLSVRGGEFGKGPRIRRCEVT 159
GKN+E+TD +K + E K+ + H ++++DV R+ V +F K R ++
Sbjct: 7 GKNIEITDFIKAYTEHKLERL----KHYLKDLDVAPDSVRVRV-VYDFEKHRHRNRVDID 61
Query: 160 LF--TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
++ T GV+ A E++ +Y++ID V ++R+L ++K++ + R ++K E
Sbjct: 62 VYLNTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRLKQRRIEASRRESRLEKMK--EH 119
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMP---PLTVSEAIEQLENVDHDFYGFRNE 274
Q +S E V E MP PLTV +A LE F F N
Sbjct: 120 TVQ--------ESSIERALIVIE-------PMPSEKPLTVEDARLMLEETGAFFLPFINS 164
Query: 275 ETGEINIVYKRKAGGYGVIIPKG 297
ETGE+N++Y++KAG YG+I P+
Sbjct: 165 ETGEVNVIYRKKAGNYGLITPRA 187
>gi|357239237|ref|ZP_09126572.1| ribosomal subunit interface protein [Streptococcus ictaluri 707-05]
gi|356751806|gb|EHI68936.1| ribosomal subunit interface protein [Streptococcus ictaluri 707-05]
Length = 182
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 109/198 (55%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDARVNLKVYR----EKSAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAE+ ++ +Y SIDLV I+R++RK K K + R ++ E
Sbjct: 57 TI-PLGSVMLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHREKISTGQVFTTEFE 115
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ VE +V+ +VR K + P+ V EA Q+E + HDF+ + + E GE
Sbjct: 116 AEQVEEIPEVK-----------VVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDAEDGE 164
Query: 279 INIVYKRKAGGYGVIIPK 296
NI+Y+R+ G G+I K
Sbjct: 165 TNILYRREDGDLGLIEAK 182
>gi|293189440|ref|ZP_06608160.1| S30AE family protein [Actinomyces odontolyticus F0309]
gi|292821530|gb|EFF80469.1| S30AE family protein [Actinomyces odontolyticus F0309]
Length = 214
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 105/217 (48%), Gaps = 31/217 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K + R VDV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQR-VDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRLK 213
R E+T++ K ++RAE + YA++D+ + + +LR+++++ DH R + + +
Sbjct: 55 RIELTVYGKG-PIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDHRRRYPRDLAEAE 113
Query: 214 VREPVTQVVENDADVQSE-----------------EEDDNFVDEIVRMKFFEMPPLTVSE 256
+ E VVE A ++E EE IVR K E PP++V E
Sbjct: 114 ILE--APVVEETATFETEAPKPLRSAEDLKVGEAREEQWGDTPIIVRQKVHEAPPMSVDE 171
Query: 257 AIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
A++Q+ V H F+ F +++T + +VY R YGV+
Sbjct: 172 ALDQMMMVGHPFFLFVDKDTNQPCVVYHRHGWTYGVL 208
>gi|385260413|ref|ZP_10038559.1| ribosomal subunit interface protein [Streptococcus sp. SK140]
gi|385191257|gb|EIF38673.1| ribosomal subunit interface protein [Streptococcus sp. SK140]
Length = 180
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 108/195 (55%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K R N++ +
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVTDKIERQIRKNKTKIERKNR-----NKVSTSQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T V+ D DV + +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 111 TDVLVEDLDVSQPK--------VVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDET 162
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 163 TNVIYRREDGDIGLL 177
>gi|223932600|ref|ZP_03624600.1| sigma 54 modulation protein/ribosomal protein S30EA [Streptococcus
suis 89/1591]
gi|253751286|ref|YP_003024427.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus suis SC84]
gi|253753187|ref|YP_003026327.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus suis P1/7]
gi|253755010|ref|YP_003028150.1| sigma-54 modulation protein / S30EA ribosomal protein
[Streptococcus suis BM407]
gi|330832290|ref|YP_004401115.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis ST3]
gi|386579375|ref|YP_006075780.1| ribosome-associated protein [Streptococcus suis JS14]
gi|386581439|ref|YP_006077843.1| ribosome-associated protein [Streptococcus suis SS12]
gi|386583550|ref|YP_006079953.1| ribosome-associated protein [Streptococcus suis D9]
gi|386587670|ref|YP_006084071.1| ribosome-associated protein [Streptococcus suis A7]
gi|403061079|ref|YP_006649295.1| Sigma 54 modulation protein [Streptococcus suis S735]
gi|223898710|gb|EEF65071.1| sigma 54 modulation protein/ribosomal protein S30EA [Streptococcus
suis 89/1591]
gi|251815575|emb|CAZ51158.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus suis SC84]
gi|251817474|emb|CAZ55215.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus suis BM407]
gi|251819432|emb|CAR44909.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus suis P1/7]
gi|319757567|gb|ADV69509.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis JS14]
gi|329306513|gb|AEB80929.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis ST3]
gi|353733585|gb|AER14595.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis SS12]
gi|353735696|gb|AER16705.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis D9]
gi|354984831|gb|AER43729.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis A7]
gi|402808405|gb|AFQ99896.1| Sigma 54 modulation protein [Streptococcus suis S735]
Length = 180
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 112/197 (56%), Gaps = 24/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++ +VEEKV K + K+ + +E++ ++++ K R +R +V
Sbjct: 2 IKFSIRGENLEVTEALRTYVEEKVAK-IEKYFNEEQELNAKVNL------KVYRDKRAKV 54
Query: 159 TLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVRE 216
+ V +RAE+ ++ +Y SIDLV I+R++R+ K K E H R KV
Sbjct: 55 EVTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKH--------RQKV-- 104
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
QV ++ Q+ EE ++VR K ++ P+ + EA+ QLE + HDF+ + +
Sbjct: 105 ATGQVFTDELVEQTGEEV-----KVVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDAND 159
Query: 277 GEINIVYKRKAGGYGVI 293
G N++Y+R+ G G++
Sbjct: 160 GTTNVLYRREDGDLGLL 176
>gi|338733797|ref|YP_004672270.1| hypothetical protein SNE_A19020 [Simkania negevensis Z]
gi|336483180|emb|CCB89779.1| putative uncharacterized protein [Simkania negevensis Z]
Length = 208
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 106/201 (52%), Gaps = 20/201 (9%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
GKN+E+T +++++EEK+ K +H++ EVDVRL V+ ++ +
Sbjct: 19 GKNIEITKPIRDYIEEKISKIEKITNHII-EVDVRLDVQ--------KLNHTVDIILKFS 69
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV--------RE 216
H V+ E +Y++ID +Q KL K K + DH H +G + ++ R+
Sbjct: 70 HFRVKVGAVTENMYSAIDKAFERLQTKLLKWKSRIQDH--HARGVSVTEMEINVLEHGRD 127
Query: 217 PVTQVVENDADVQSEEEDDNF-VDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
V Q+ + D +++ ++ + + +++ K + LT+ EA+ ++E D F +R+EE
Sbjct: 128 EVEQINQEITDANNQKLEEQYSLPTVIKKKKRPLKHLTLDEAVMKMELSDDHFMVYRSEE 187
Query: 276 TGEINIVYKRKAGGYGVIIPK 296
+ ++Y+R+ G YG+I P+
Sbjct: 188 EQNLKVIYRRRDGSYGIIAPE 208
>gi|257890394|ref|ZP_05670047.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,410]
gi|257893002|ref|ZP_05672655.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,408]
gi|260559611|ref|ZP_05831791.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium C68]
gi|293560374|ref|ZP_06676867.1| ribosomal subunit interface protein [Enterococcus faecium E1162]
gi|314939595|ref|ZP_07846822.1| ribosomal subunit interface protein [Enterococcus faecium
TX0133a04]
gi|314941221|ref|ZP_07848117.1| ribosomal subunit interface protein [Enterococcus faecium TX0133C]
gi|314949846|ref|ZP_07853156.1| ribosomal subunit interface protein [Enterococcus faecium TX0082]
gi|314953360|ref|ZP_07856287.1| ribosomal subunit interface protein [Enterococcus faecium TX0133A]
gi|314993439|ref|ZP_07858804.1| ribosomal subunit interface protein [Enterococcus faecium TX0133B]
gi|314995788|ref|ZP_07860877.1| ribosomal subunit interface protein [Enterococcus faecium
TX0133a01]
gi|383329359|ref|YP_005355243.1| ribosomal subunit interface protein [Enterococcus faecium Aus0004]
gi|424793824|ref|ZP_18219882.1| ribosomal subunit interface protein [Enterococcus faecium V689]
gi|424849351|ref|ZP_18273808.1| ribosomal subunit interface protein [Enterococcus faecium R501]
gi|424866977|ref|ZP_18290795.1| ribosomal subunit interface protein [Enterococcus faecium R497]
gi|424953949|ref|ZP_18368876.1| ribosomal subunit interface protein [Enterococcus faecium R494]
gi|424971320|ref|ZP_18384763.1| ribosomal subunit interface protein [Enterococcus faecium P1139]
gi|424978548|ref|ZP_18391461.1| ribosomal subunit interface protein [Enterococcus faecium P1123]
gi|424985593|ref|ZP_18398056.1| ribosomal subunit interface protein [Enterococcus faecium ERV69]
gi|424989412|ref|ZP_18401679.1| ribosomal subunit interface protein [Enterococcus faecium ERV38]
gi|424990524|ref|ZP_18402732.1| ribosomal subunit interface protein [Enterococcus faecium ERV26]
gi|425035285|ref|ZP_18440128.1| ribosomal subunit interface protein [Enterococcus faecium 514]
gi|425038119|ref|ZP_18442748.1| ribosomal subunit interface protein [Enterococcus faecium 513]
gi|425041548|ref|ZP_18445941.1| ribosomal subunit interface protein [Enterococcus faecium 511]
gi|425048912|ref|ZP_18452792.1| ribosomal subunit interface protein [Enterococcus faecium 509]
gi|425059821|ref|ZP_18463139.1| ribosomal subunit interface protein [Enterococcus faecium 503]
gi|257826754|gb|EEV53380.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,410]
gi|257829381|gb|EEV55988.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,408]
gi|260074279|gb|EEW62601.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium C68]
gi|291605662|gb|EFF35103.1| ribosomal subunit interface protein [Enterococcus faecium E1162]
gi|313590060|gb|EFR68905.1| ribosomal subunit interface protein [Enterococcus faecium
TX0133a01]
gi|313592104|gb|EFR70949.1| ribosomal subunit interface protein [Enterococcus faecium TX0133B]
gi|313594636|gb|EFR73481.1| ribosomal subunit interface protein [Enterococcus faecium TX0133A]
gi|313599945|gb|EFR78788.1| ribosomal subunit interface protein [Enterococcus faecium TX0133C]
gi|313641135|gb|EFS05715.1| ribosomal subunit interface protein [Enterococcus faecium
TX0133a04]
gi|313643919|gb|EFS08499.1| ribosomal subunit interface protein [Enterococcus faecium TX0082]
gi|378939053|gb|AFC64125.1| ribosomal subunit interface protein [Enterococcus faecium Aus0004]
gi|402915940|gb|EJX36861.1| ribosomal subunit interface protein [Enterococcus faecium V689]
gi|402917218|gb|EJX38026.1| ribosomal subunit interface protein [Enterococcus faecium R501]
gi|402937869|gb|EJX56928.1| ribosomal subunit interface protein [Enterococcus faecium R494]
gi|402938280|gb|EJX57297.1| ribosomal subunit interface protein [Enterococcus faecium R497]
gi|402959554|gb|EJX76808.1| ribosomal subunit interface protein [Enterococcus faecium P1139]
gi|402961406|gb|EJX78442.1| ribosomal subunit interface protein [Enterococcus faecium P1123]
gi|402965406|gb|EJX82124.1| ribosomal subunit interface protein [Enterococcus faecium ERV69]
gi|402968828|gb|EJX85285.1| ribosomal subunit interface protein [Enterococcus faecium ERV38]
gi|402979297|gb|EJX94972.1| ribosomal subunit interface protein [Enterococcus faecium ERV26]
gi|403018357|gb|EJY31045.1| ribosomal subunit interface protein [Enterococcus faecium 514]
gi|403020154|gb|EJY32712.1| ribosomal subunit interface protein [Enterococcus faecium 513]
gi|403025836|gb|EJY37881.1| ribosomal subunit interface protein [Enterococcus faecium 511]
gi|403029452|gb|EJY41204.1| ribosomal subunit interface protein [Enterococcus faecium 509]
gi|403043207|gb|EJY54129.1| ribosomal subunit interface protein [Enterococcus faecium 503]
Length = 183
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 103/191 (53%), Gaps = 16/191 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K + R G N T +
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRET-GMNT----ADATALF 114
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ + +++ E D IVR K + P+ EA+ Q+ + H+F+ F + ET +IV
Sbjct: 115 NEEDENENDSELD-----IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSIV 169
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 170 YRRKDGKYGLI 180
>gi|260102490|ref|ZP_05752727.1| ribosomal subunit interface protein [Lactobacillus helveticus DSM
20075]
gi|260083695|gb|EEW67815.1| ribosomal subunit interface protein [Lactobacillus helveticus DSM
20075]
Length = 188
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 108/200 (54%), Gaps = 19/200 (9%)
Query: 94 GPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI 153
G +K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R
Sbjct: 4 GESYMLKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDHSA--- 59
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
+ EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG
Sbjct: 60 -KVEVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFF 116
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
V +P + + +IVR K + P+ EAI Q++ ++HDF+ F +
Sbjct: 117 VEQPEEEEKKPSEF------------DIVRNKRVSLKPMDPEEAILQMDMMEHDFFVFED 164
Query: 274 EETGEINIVYKRKAGGYGVI 293
ET I++VY+R G YG+I
Sbjct: 165 AETNGISVVYRRNDGRYGLI 184
>gi|300779610|ref|ZP_07089466.1| ribosome-associated inhibitor protein Y [Corynebacterium genitalium
ATCC 33030]
gi|300533720|gb|EFK54779.1| ribosome-associated inhibitor protein Y [Corynebacterium genitalium
ATCC 33030]
Length = 224
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 30/214 (14%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-- 155
+ ++ I G+N+E V H +E+V + K + ++D L+ E P RR
Sbjct: 15 NAQVTITGRNVE----VPEHFQERVNTKLAK----IEKLDPTLNFFHVELKHEPNPRREA 66
Query: 156 ----CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
++T K H + RAE ++ YA+++ ++R LRK+K + M G
Sbjct: 67 QANRIQITATGKGH-LARAEAKEDSFYAALESAIGKMERSLRKVKVRREIS---MGGHRA 122
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVD------------EIVRMKFFEMPPLTVSEAIE 259
K VT + +A+ +E+DD + D ++VR K P++V EA+
Sbjct: 123 PKSTYEVTSELVAEAEQARQEQDDRYADKYAESINENLPGQVVRTKEHPATPMSVDEALS 182
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
++E V HDFY F N+E ++VY+R A YG+I
Sbjct: 183 EMELVGHDFYLFINDENQRPSVVYRRHAYDYGLI 216
>gi|169350334|ref|ZP_02867272.1| hypothetical protein CLOSPI_01095 [Clostridium spiroforme DSM 1552]
gi|169293117|gb|EDS75250.1| ribosomal subunit interface protein [Clostridium spiroforme DSM
1552]
Length = 175
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 107/195 (54%), Gaps = 23/195 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKN+E+T+ +++ + +K+ K + K+ + V+ ++ R +G+ + EV
Sbjct: 1 MKISVRGKNIEITEAIESKISDKLSK-LDKYFIVSDNVEAKVLCRVYPYGQ-----KLEV 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T+ + ++RAE +Y ++DLV ++ ++RK K + S + N+L
Sbjct: 55 TIPTE-YVLLRAEVVDSDLYTAMDLVVDKLEGQIRKYKTRLSRKSKD----NKLAFNLSS 109
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ VE D DV +V++K P+ + EAI Q+E + H F+ +R+ E+
Sbjct: 110 IEDVETDDDV------------LVKVKSITPKPMDMEEAIMQMELIGHSFFVYRDAESDS 157
Query: 279 INIVYKRKAGGYGVI 293
I+IVY+R G YG+I
Sbjct: 158 ISIVYRRNDGDYGLI 172
>gi|430825834|ref|ZP_19444034.1| ribosomal subunit interface protein [Enterococcus faecium E0164]
gi|430445731|gb|ELA55453.1| ribosomal subunit interface protein [Enterococcus faecium E0164]
Length = 183
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 18/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ A E+E++N + +IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 DAAALFNEEDENENDSELDIVRTKRLSLKPMVSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 282 VYKRKAGGYGVI 293
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|339639963|ref|ZP_08661407.1| ribosomal subunit interface protein [Streptococcus sp. oral taxon
056 str. F0418]
gi|339453232|gb|EGP65847.1| ribosomal subunit interface protein [Streptococcus sp. oral taxon
056 str. F0418]
Length = 180
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 111/195 (56%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEALRDYVVSKLEK-IEKYFQADQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAE+ ++ +Y SIDLV I+R++RK K K R +++ +
Sbjct: 57 TI-PLGSIMLRAEDISQDMYGSIDLVVDKIERQIRKNKTKIERKNR-----SKVSASQIF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T+V+ EE+D ++VR K ++ P+ + EA+ Q++ + HDF+ + + E G
Sbjct: 111 TEVLV--------EENDEVSAKVVRSKHIDLKPMDLEEALLQMDLLGHDFFIYTDVEDGT 162
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 163 TNVIYRREDGDIGLL 177
>gi|431764484|ref|ZP_19553023.1| ribosomal subunit interface protein [Enterococcus faecium E4215]
gi|430630871|gb|ELB67211.1| ribosomal subunit interface protein [Enterococcus faecium E4215]
Length = 183
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 18/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKAEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ A E+E++N + +IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 DAAALFNEEDENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 282 VYKRKAGGYGVI 293
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|389856121|ref|YP_006358364.1| ribosome-associated protein [Streptococcus suis ST1]
gi|353739839|gb|AER20846.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis ST1]
Length = 180
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 112/197 (56%), Gaps = 24/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++ +VEEKV K + K+ + +E++ ++++ K R +R +V
Sbjct: 2 IKFSIRGENLEVTEALRTYVEEKVAK-IEKYFNEEQELNAKVNL------KVYRDKRAKV 54
Query: 159 TLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVRE 216
+ V +RAE+ ++ +Y SIDLV I+R++R+ K K E H R KV
Sbjct: 55 EVTIPIGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKH--------RQKV-- 104
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
QV ++ Q+ EE ++VR K ++ P+ + EA+ QLE + HDF+ + +
Sbjct: 105 ATGQVFTDELVEQTGEEV-----KVVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDAND 159
Query: 277 GEINIVYKRKAGGYGVI 293
G N++Y+R+ G G++
Sbjct: 160 GTTNVLYRREDGDLGLL 176
>gi|323350289|ref|ZP_08085954.1| ribosomal subunit interface protein [Streptococcus sanguinis VMC66]
gi|401681021|ref|ZP_10812927.1| ribosomal subunit interface protein [Streptococcus sp. AS14]
gi|422820641|ref|ZP_16868834.1| ribosomal subunit interface protein [Streptococcus sanguinis SK353]
gi|422851017|ref|ZP_16897687.1| ribosomal subunit interface protein [Streptococcus sanguinis SK150]
gi|322123474|gb|EFX95145.1| ribosomal subunit interface protein [Streptococcus sanguinis VMC66]
gi|324991783|gb|EGC23715.1| ribosomal subunit interface protein [Streptococcus sanguinis SK353]
gi|325695235|gb|EGD37136.1| ribosomal subunit interface protein [Streptococcus sanguinis SK150]
gi|400187815|gb|EJO22007.1| ribosomal subunit interface protein [Streptococcus sp. AS14]
Length = 180
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 111/195 (56%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 LKYSIRGENLEVTDALRDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ NR KV
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVTDKIERQIRKNKTK-------IERKNRNKV--AT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+Q+ + ++EE ++VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 107 SQLFTDSFAEEAEE----IPSKVVRSKHIDLKPMDLEEAILQMDLLGHDFFIYSDAEDSS 162
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 163 TNVIYRREDGDIGLL 177
>gi|417794046|ref|ZP_12441309.1| ribosomal subunit interface protein [Streptococcus oralis SK255]
gi|334271156|gb|EGL89550.1| ribosomal subunit interface protein [Streptococcus oralis SK255]
Length = 182
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 109/195 (55%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K K N++ +
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-----IERKNKNKVATSQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T + DADV + +VR K ++ P+ + EA+ Q++ + HDF+ + + E
Sbjct: 111 TDALVEDADVVQPK--------VVRSKQIDLKPMDLEEALLQMDLLGHDFFIYVDVEDQT 162
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ GG G++
Sbjct: 163 TNVLYRREDGGVGLL 177
>gi|154509498|ref|ZP_02045140.1| hypothetical protein ACTODO_02030 [Actinomyces odontolyticus ATCC
17982]
gi|153799132|gb|EDN81552.1| ribosomal subunit interface protein [Actinomyces odontolyticus ATCC
17982]
Length = 214
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 31/217 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K + R VDV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQR-VDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRLK 213
R E+T++ K ++RAE + YA++D+ + + +LR+++++ DH R + + +
Sbjct: 55 RIELTVYGKG-PIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDHRRRYPRDLAEAE 113
Query: 214 VREPVTQVVENDADVQSE-----------------EEDDNFVDEIVRMKFFEMPPLTVSE 256
+ E VVE A + E EE IVR K E PP++V E
Sbjct: 114 ILE--APVVEETATFEPEAPKPLRSAEDLKVGEAREEQWGDTPIIVRQKVHEAPPMSVDE 171
Query: 257 AIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
A++Q+ V H F+ F +++T + +VY R YGV+
Sbjct: 172 ALDQMMMVGHPFFLFVDKDTNQPCVVYHRHGWTYGVL 208
>gi|145356942|ref|XP_001422682.1| Plastid-specific ribosomal protein 1 [Ostreococcus lucimarinus
CCE9901]
gi|144582925|gb|ABP00999.1| Plastid-specific ribosomal protein 1 [Ostreococcus lucimarinus
CCE9901]
Length = 132
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL----VREVDVRLSVRGGEFGKGPRIRRC 156
+++QG +LE+T + + K+GKA SH+ +REVDVR S RGGE +G +
Sbjct: 1 MLVQGLHLEITPAIDEYCRAKIGKAC---SHVDPREIREVDVRCSARGGEDSRGGHEHKT 57
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG-RH 205
EVT+ + + A+ E +YA+ID + I+ R +RK KEK S G RH
Sbjct: 58 EVTVLMTRGTTLHADGTGENLYATIDSCADIVTRAIRKHKEKHSGKGSRH 107
>gi|313889480|ref|ZP_07823127.1| ribosomal subunit interface protein [Streptococcus pseudoporcinus
SPIN 20026]
gi|416852090|ref|ZP_11909235.1| ribosomal subunit interface protein [Streptococcus pseudoporcinus
LQ 940-04]
gi|313122150|gb|EFR45242.1| ribosomal subunit interface protein [Streptococcus pseudoporcinus
SPIN 20026]
gi|356739579|gb|EHI64811.1| ribosomal subunit interface protein [Streptococcus pseudoporcinus
LQ 940-04]
Length = 182
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 108/195 (55%), Gaps = 17/195 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++++VE K+ K + K+ E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTDAIRDYVESKLAK-IEKYFVEENEIDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TILLGSM-TLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KIPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
QV ++ + + EE V ++VR K + P+ + EA Q+E + HDF+ + + E G
Sbjct: 107 GQVFTSEFESEEVEE--GPVVKVVRTKNVTLKPMDIEEARLQMELLGHDFFIYTDSEDGA 164
Query: 279 INIVYKRKAGGYGVI 293
NI+Y+R+ G G+I
Sbjct: 165 TNILYRREDGDLGLI 179
>gi|293556400|ref|ZP_06674981.1| ribosomal subunit interface protein [Enterococcus faecium E1039]
gi|291601467|gb|EFF31738.1| ribosomal subunit interface protein [Enterococcus faecium E1039]
Length = 183
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 18/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDSPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ A E+E++N + +IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 DAAALFNEEDENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 282 VYKRKAGGYGVI 293
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|399887173|ref|ZP_10773050.1| Ribosome-associated protein Y (PSrp-1) [Clostridium arbusti SL206]
Length = 178
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 105/212 (49%), Gaps = 49/212 (23%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-------VLKHSHLVRE-----VDVRLSVRGGE 146
+++ I GKN+E+T+ +++ +E+K+ K V H+ L E V+V + G
Sbjct: 1 MRITISGKNVEVTNGLRSAIEKKLTKLDRYFNPDVTAHATLSVENYRQIVEVTIPFGGA- 59
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGR 204
++R EE +YA+IDLV+ ++R++RK K K +G
Sbjct: 60 --------------------ILRGEESNTDMYAAIDLVADKMERQVRKQKTKLDRKKYGA 99
Query: 205 HMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENV 264
++ ++ D + +D+ IV+ K F + P++ EA+ Q+E +
Sbjct: 100 SLR--------------FQSIPDFEDYGKDEVKEPSIVKTKKFAIKPMSEEEAVLQMELL 145
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296
H F+ F+N ++ E+N+VYKRK G YG+I P+
Sbjct: 146 AHSFFVFQNADSTEVNVVYKRKDGNYGLIEPE 177
>gi|300814123|ref|ZP_07094406.1| ribosomal subunit interface protein [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300511780|gb|EFK38997.1| ribosomal subunit interface protein [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 176
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 31/193 (16%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
GKN++L + +K+ ++K K + EV R F K ++ EVT+F
Sbjct: 7 GKNIDLKEGLKDQAQKKFSKL---DKYFAEEVQAR-----AVFSKQKNGQKVEVTIFLP- 57
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
++RAEE ++ ++ SID ++R++RK K RLK R + +
Sbjct: 58 GTILRAEETSQDMFVSIDKTVDKLERQVRKYK-------------TRLKKRYQNNETIRF 104
Query: 225 D----ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
D Q EE+ D I + K F + P+ EAI Q+E ++H+F+ F+N E +I
Sbjct: 105 DNFDKEPAQKEEDKD-----IKKRKTFTLRPMHEDEAILQMELLNHNFFIFKNAENDKIE 159
Query: 281 IVYKRKAGGYGVI 293
+ YKR G YG+I
Sbjct: 160 VSYKRSDGDYGII 172
>gi|161507198|ref|YP_001577152.1| putative phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus DPC 4571]
gi|403515422|ref|YP_006656242.1| phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus R0052]
gi|160348187|gb|ABX26861.1| putative phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus DPC 4571]
gi|403080860|gb|AFR22438.1| putative phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus R0052]
Length = 181
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 107/195 (54%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V +P
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVEQPE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ + +IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 115 EEEKKPSEF------------DIVRNKRVSLKPMDPEEAILQMDMMEHDFFVFEDAETNG 162
Query: 279 INIVYKRKAGGYGVI 293
I++VY+R G YG+I
Sbjct: 163 ISVVYRRNDGRYGLI 177
>gi|310829211|ref|YP_003961568.1| ribosome-associated protein [Eubacterium limosum KIST612]
gi|308740945|gb|ADO38605.1| ribosome-associated protein [Eubacterium limosum KIST612]
Length = 177
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 22/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I GKN+ +++ +K + +K K + +E +V + F K + E+
Sbjct: 1 MKFTIYGKNMHVSEGLKEALRKKFEKF---DRYFGQETEVYAT-----FSKEKNFQMLEI 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K ++RAEE +E + SI+ V ++ +LRK K K L+ R
Sbjct: 53 TIPMGK-TILRAEEKSEDMAGSIEAVVDKLEGQLRKHKTK-------------LQKRYAE 98
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ N ++ E+ + ++VR K F + P++V EA Q+E + HDF+ F N ET +
Sbjct: 99 EALKYNLDGLEPMEDYEEHPPKVVRTKKFAVKPMSVDEATMQMELLGHDFFVFLNAETED 158
Query: 279 INIVYKRKAGGYGVIIP 295
+N+VY RK G YG+I P
Sbjct: 159 VNVVYMRKDGNYGLIEP 175
>gi|269128236|ref|YP_003301606.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Thermomonospora curvata DSM 43183]
gi|268313194|gb|ACY99568.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermomonospora curvata DSM 43183]
Length = 221
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 39/225 (17%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+ +I++G++ E+ D + HV+ K+ K + + + + VDV +S PR+ RR
Sbjct: 1 MDIIVKGRHTEVNDRFREHVDNKLAK-IERFARKIIRVDVEVSEE-----HNPRLADRRE 54
Query: 157 EVTLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRHMKGFNRLKV 214
V L + G V+RAE AE Y ++DL ++ +LR+ ++ H + +L
Sbjct: 55 RVELTIRSRGPVIRAEAAAEDRYGALDLALDKLEARLRRSADRRKIHYNSGTRAPAKLAH 114
Query: 215 REPVTQVVENDADVQSEEED--------------------------DNFVDEIVRMKFFE 248
EP+T E A E+ D +VR KF
Sbjct: 115 LEPLT---EPPAAAPPEDSAEGAPAAEPAAATEPAEEGGNVVPIAMDGDGPLVVREKFHR 171
Query: 249 MPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
P+T+ +A+ ++E V HDF+ FR++E G ++VY+RK YGVI
Sbjct: 172 SAPMTIDQALYEMELVGHDFFLFRDKENGHPSVVYRRKGWNYGVI 216
>gi|160902874|ref|YP_001568455.1| sigma 54 modulation protein/ribosomal protein S30EA [Petrotoga
mobilis SJ95]
gi|160360518|gb|ABX32132.1| sigma 54 modulation protein/ribosomal protein S30EA [Petrotoga
mobilis SJ95]
Length = 199
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 109/203 (53%), Gaps = 24/203 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGK---AVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
+ K +ELT+ ++N++E+++ K + KH +V DVR++ G I + E+T
Sbjct: 5 VYTKEVELTEALENYIEKRMSKPDHLLKKHPDIVSPSDVRITKERG-------IYKVEIT 57
Query: 160 LFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+++ EE + +Y +ID V+ ++RK+RK+K + + R K K R +
Sbjct: 58 THINPLSKIIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQEQSRTDK-----KARMEI 112
Query: 219 TQVVEN----DADVQSEEEDDNFVD----EIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
Q ++N + D+ E E + +IVR K F++ ++V EA+ Q++ + H F+
Sbjct: 113 EQNLQNPDIKNLDLAEENESEIEEKPDAPKIVRTKNFDLTLMSVEEAMLQMQLLGHSFFV 172
Query: 271 FRNEETGEINIVYKRKAGGYGVI 293
FRN + I+++Y+RK G G+I
Sbjct: 173 FRNPDNDAISVLYERKDGDLGLI 195
>gi|422824683|ref|ZP_16872868.1| ribosomal subunit interface protein [Streptococcus sanguinis SK405]
gi|422872084|ref|ZP_16918577.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1087]
gi|324991963|gb|EGC23885.1| ribosomal subunit interface protein [Streptococcus sanguinis SK405]
gi|328945018|gb|EGG39174.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1087]
Length = 180
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 111/195 (56%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 LKYSIRGENLEVTDALRDYVVSKLEK-IEKYFQAEQELDARVNLKIYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ NR KV
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVTDKIERQIRKNKTK-------IERKNRNKV--AT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+Q+ + ++EE ++VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 107 SQLFTDSFAEEAEE----IPSKVVRSKHIDLKPMDLEEAILQMDLLGHDFFIYSDAEDSS 162
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 163 TNVIYRREDGDIGLL 177
>gi|295836934|ref|ZP_06823867.1| S30AE family protein [Streptomyces sp. SPB74]
gi|295826283|gb|EDY45817.2| S30AE family protein [Streptomyces sp. SPB74]
Length = 279
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 27/216 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 44 IDIVVKGRKTEVPERFRKHVAEKLNVEKIQKLDGKVMSLDVEVS-KEHNPRQADRCDRVE 102
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + + ++RK E D R +G RL E
Sbjct: 103 ITLRSRG-PVIRAEACAADPYAALDLAVAKLAARMRK----EHDKRRTRRGTERLTAAEV 157
Query: 217 ----PVTQVVENDAD-VQSEEEDDNFVDE--------------IVRMKFFEMPPLTVSEA 257
P T + D + E E D V +VR K P+++ +A
Sbjct: 158 AERVPGTAGLNEDGTFAEPEPESDGGVPTKKVGSLEVQGDGPLVVREKTHLAAPMSLDQA 217
Query: 258 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 218 LYEMELVGHDFYLFVDAETKEPSVVYRRHAYDYGVI 253
>gi|333397311|ref|ZP_08479124.1| ribosome-associated factor Y [Leuconostoc gelidum KCTC 3527]
gi|406600566|ref|YP_006745912.1| ribosome-associated factor Y [Leuconostoc gelidum JB7]
gi|406372101|gb|AFS41026.1| ribosome-associated factor Y [Leuconostoc gelidum JB7]
Length = 182
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 110/191 (57%), Gaps = 19/191 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+ +TD ++ +VE+++ K + ++ + +++R K + EVT+
Sbjct: 6 VRGENIAVTDALREYVEKRLTKL---NRYIEEKSSANVNLRTY---KSDNSGKVEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ +YA++D VS ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTNPDLYAAVDAVSEKLERQIRKYKTK----------INR-KSRETGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+++ ++ + E DD+ + +IVR K ++ P++ EA Q++ + H F+ F++ ET +++
Sbjct: 108 DSNDEIPASEVDDDAL-QIVRTKQVDLKPMSPEEAALQMDLLAHSFFIFKDAETNTDSVI 166
Query: 283 YKRKAGGYGVI 293
YKR+ G YG++
Sbjct: 167 YKRQDGKYGLL 177
>gi|253315814|ref|ZP_04839027.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
Length = 163
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 14/143 (9%)
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFN 210
+ EVT+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G
Sbjct: 26 KIEVTI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVA 84
Query: 211 RLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
L+ + TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+
Sbjct: 85 ELQEMQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFV 135
Query: 271 FRNEETGEINIVYKRKAGGYGVI 293
F + ET +IVY+RK G YG+I
Sbjct: 136 FTDRETDGTSIVYRRKDGKYGLI 158
>gi|417020649|ref|ZP_11947318.1| putative phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus MTCC 5463]
gi|328461866|gb|EGF34088.1| putative phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus MTCC 5463]
Length = 181
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 107/195 (54%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V +P
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVEQPE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ + +IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 115 EEEKKPSEF------------DIVRNKRVSLKPMDPEEAILQMDMMEHDFFVFEDAETNG 162
Query: 279 INIVYKRKAGGYGVI 293
I++VY+R G YG+I
Sbjct: 163 ISLVYRRNDGRYGLI 177
>gi|295692543|ref|YP_003601153.1| ribosomal subunit interface protein [Lactobacillus crispatus ST1]
gi|295030649|emb|CBL50128.1| Ribosomal subunit interface protein [Lactobacillus crispatus ST1]
Length = 181
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 108/195 (55%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYR----DRSAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V +P
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVEQPE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ + F +IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 115 EEEKKPSE----------F--DIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETNG 162
Query: 279 INIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 163 TSVVYRRNDGRYGLI 177
>gi|335029753|ref|ZP_08523258.1| ribosomal subunit interface protein [Streptococcus infantis SK1076]
gi|417938721|ref|ZP_12582015.1| ribosomal subunit interface protein [Streptococcus infantis SK970]
gi|334268277|gb|EGL86719.1| ribosomal subunit interface protein [Streptococcus infantis SK1076]
gi|343390736|gb|EGV03315.1| ribosomal subunit interface protein [Streptococcus infantis SK970]
Length = 182
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 109/198 (55%), Gaps = 19/198 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K R N++ +
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIERKNR-----NKVSTSQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T + D+DV + +VR K ++ P+ + EA+ Q++ + HDF+ + + E
Sbjct: 111 TDALVEDSDVAQAK--------VVRSKHIDLKPMDLEEALLQMDLLGHDFFIYIDVEDET 162
Query: 279 INIVYKRKAGGYGVIIPK 296
N++Y+R+ G G++ K
Sbjct: 163 TNVIYRREDGDIGLLEAK 180
>gi|320095866|ref|ZP_08027498.1| ribosome-associated protein Y [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319977203|gb|EFW08914.1| ribosome-associated protein Y [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 221
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 29/218 (13%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----I 153
++ + + +N E+ + +VEEKV K + R +DV L+ + PR
Sbjct: 4 NMDITVVARNAEIHPNFRQYVEEKVSKVTQFYPRAQR-IDVELT-----HERNPRQADTA 57
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRL 212
R E+T++ K ++RAE + YA++D+ + + +LR+++++ DH R + +
Sbjct: 58 ERIELTVYGKG-PIIRAEAKSADRYAAVDIAAGKLYERLRRLRDRAKDHRRGYARDLTDT 116
Query: 213 KVRE-PVTQV-------------VENDADVQ-SEEEDDNFVDE--IVRMKFFEMPPLTVS 255
+V E PV + + D++ E ++ + D IVR K E PP+TV
Sbjct: 117 EVLEAPVPPQQEEAPAEEAAPKPLRSAEDLKVGEAREEQWGDSPIIVRQKVHEAPPMTVD 176
Query: 256 EAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
EA++Q+ V H F+ F ++ET + +VY R YGV+
Sbjct: 177 EALDQMMMVGHPFFLFVDKETRQPCVVYHRHGWTYGVL 214
>gi|257882723|ref|ZP_05662376.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,502]
gi|261208676|ref|ZP_05923113.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium TC 6]
gi|289566066|ref|ZP_06446503.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|293568707|ref|ZP_06680022.1| ribosomal subunit interface protein [Enterococcus faecium E1071]
gi|294616266|ref|ZP_06696059.1| ribosomal subunit interface protein [Enterococcus faecium E1636]
gi|294617598|ref|ZP_06697228.1| ribosomal subunit interface protein [Enterococcus faecium E1679]
gi|294622338|ref|ZP_06701371.1| ribosomal subunit interface protein [Enterococcus faecium U0317]
gi|406590695|ref|ZP_11065053.1| ribosomal subunit interface protein [Enterococcus sp. GMD1E]
gi|410936779|ref|ZP_11368642.1| ribosome-associated inhibitor protein Y [Enterococcus sp. GMD5E]
gi|415889752|ref|ZP_11549369.1| ribosomal subunit interface protein [Enterococcus faecium E4453]
gi|416140992|ref|ZP_11599328.1| ribosomal subunit interface protein [Enterococcus faecium E4452]
gi|424795783|ref|ZP_18221595.1| ribosomal subunit interface protein [Enterococcus faecium S447]
gi|424856157|ref|ZP_18280416.1| ribosomal subunit interface protein [Enterococcus faecium R499]
gi|424950544|ref|ZP_18365705.1| ribosomal subunit interface protein [Enterococcus faecium R496]
gi|424956317|ref|ZP_18371104.1| ribosomal subunit interface protein [Enterococcus faecium R446]
gi|424961533|ref|ZP_18375971.1| ribosomal subunit interface protein [Enterococcus faecium P1986]
gi|424966709|ref|ZP_18380469.1| ribosomal subunit interface protein [Enterococcus faecium P1140]
gi|424995715|ref|ZP_18407579.1| ribosomal subunit interface protein [Enterococcus faecium ERV168]
gi|424997606|ref|ZP_18409353.1| ribosomal subunit interface protein [Enterococcus faecium ERV165]
gi|425000206|ref|ZP_18411782.1| ribosomal subunit interface protein [Enterococcus faecium ERV161]
gi|425005548|ref|ZP_18416786.1| ribosomal subunit interface protein [Enterococcus faecium ERV102]
gi|425007086|ref|ZP_18418237.1| ribosomal subunit interface protein [Enterococcus faecium ERV1]
gi|425010476|ref|ZP_18421425.1| ribosomal subunit interface protein [Enterococcus faecium E422]
gi|425015982|ref|ZP_18426569.1| ribosomal subunit interface protein [Enterococcus faecium E417]
gi|425016232|ref|ZP_18426805.1| ribosomal subunit interface protein [Enterococcus faecium C621]
gi|425032039|ref|ZP_18437128.1| ribosomal subunit interface protein [Enterococcus faecium 515]
gi|425059090|ref|ZP_18462442.1| ribosomal subunit interface protein [Enterococcus faecium 504]
gi|430819565|ref|ZP_19438216.1| ribosomal subunit interface protein [Enterococcus faecium E0045]
gi|430827931|ref|ZP_19446061.1| ribosomal subunit interface protein [Enterococcus faecium E0269]
gi|430834251|ref|ZP_19452258.1| ribosomal subunit interface protein [Enterococcus faecium E0679]
gi|430835487|ref|ZP_19453477.1| ribosomal subunit interface protein [Enterococcus faecium E0680]
gi|430838446|ref|ZP_19456392.1| ribosomal subunit interface protein [Enterococcus faecium E0688]
gi|430843698|ref|ZP_19461597.1| ribosomal subunit interface protein [Enterococcus faecium E1050]
gi|430847825|ref|ZP_19465659.1| ribosomal subunit interface protein [Enterococcus faecium E1133]
gi|430849264|ref|ZP_19467045.1| ribosomal subunit interface protein [Enterococcus faecium E1185]
gi|430852011|ref|ZP_19469746.1| ribosomal subunit interface protein [Enterococcus faecium E1258]
gi|430857799|ref|ZP_19475432.1| ribosomal subunit interface protein [Enterococcus faecium E1552]
gi|430860553|ref|ZP_19478152.1| ribosomal subunit interface protein [Enterococcus faecium E1573]
gi|430882351|ref|ZP_19484044.1| ribosomal subunit interface protein [Enterococcus faecium E1575]
gi|430946961|ref|ZP_19485741.1| ribosomal subunit interface protein [Enterococcus faecium E1576]
gi|431003680|ref|ZP_19488778.1| ribosomal subunit interface protein [Enterococcus faecium E1578]
gi|431149495|ref|ZP_19499353.1| ribosomal subunit interface protein [Enterococcus faecium E1620]
gi|431230170|ref|ZP_19502373.1| ribosomal subunit interface protein [Enterococcus faecium E1622]
gi|431251994|ref|ZP_19504052.1| ribosomal subunit interface protein [Enterococcus faecium E1623]
gi|431301390|ref|ZP_19507709.1| ribosomal subunit interface protein [Enterococcus faecium E1626]
gi|431374532|ref|ZP_19510220.1| ribosomal subunit interface protein [Enterococcus faecium E1627]
gi|431514004|ref|ZP_19516052.1| ribosomal subunit interface protein [Enterococcus faecium E1634]
gi|431746564|ref|ZP_19535389.1| ribosomal subunit interface protein [Enterococcus faecium E2134]
gi|431748971|ref|ZP_19537723.1| ribosomal subunit interface protein [Enterococcus faecium E2297]
gi|431767563|ref|ZP_19556010.1| ribosomal subunit interface protein [Enterococcus faecium E1321]
gi|431771169|ref|ZP_19559555.1| ribosomal subunit interface protein [Enterococcus faecium E1644]
gi|431772610|ref|ZP_19560948.1| ribosomal subunit interface protein [Enterococcus faecium E2369]
gi|431775408|ref|ZP_19563681.1| ribosomal subunit interface protein [Enterococcus faecium E2560]
gi|431780139|ref|ZP_19568324.1| ribosomal subunit interface protein [Enterococcus faecium E4389]
gi|431781565|ref|ZP_19569710.1| ribosomal subunit interface protein [Enterococcus faecium E6012]
gi|431786059|ref|ZP_19574076.1| ribosomal subunit interface protein [Enterococcus faecium E6045]
gi|257818381|gb|EEV45709.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,502]
gi|260077178|gb|EEW64898.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium TC 6]
gi|289162173|gb|EFD10036.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|291588667|gb|EFF20500.1| ribosomal subunit interface protein [Enterococcus faecium E1071]
gi|291590780|gb|EFF22496.1| ribosomal subunit interface protein [Enterococcus faecium E1636]
gi|291596204|gb|EFF27467.1| ribosomal subunit interface protein [Enterococcus faecium E1679]
gi|291598165|gb|EFF29264.1| ribosomal subunit interface protein [Enterococcus faecium U0317]
gi|364090321|gb|EHM32924.1| ribosomal subunit interface protein [Enterococcus faecium E4452]
gi|364094611|gb|EHM36758.1| ribosomal subunit interface protein [Enterococcus faecium E4453]
gi|402924022|gb|EJX44264.1| ribosomal subunit interface protein [Enterococcus faecium S447]
gi|402930465|gb|EJX50116.1| ribosomal subunit interface protein [Enterococcus faecium R499]
gi|402932942|gb|EJX52408.1| ribosomal subunit interface protein [Enterococcus faecium R496]
gi|402943463|gb|EJX61948.1| ribosomal subunit interface protein [Enterococcus faecium P1986]
gi|402946270|gb|EJX64554.1| ribosomal subunit interface protein [Enterococcus faecium R446]
gi|402955996|gb|EJX73483.1| ribosomal subunit interface protein [Enterococcus faecium P1140]
gi|402976604|gb|EJX92482.1| ribosomal subunit interface protein [Enterococcus faecium ERV168]
gi|402985772|gb|EJY00952.1| ribosomal subunit interface protein [Enterococcus faecium ERV165]
gi|402985897|gb|EJY01058.1| ribosomal subunit interface protein [Enterococcus faecium ERV102]
gi|402989723|gb|EJY04635.1| ribosomal subunit interface protein [Enterococcus faecium ERV161]
gi|402993590|gb|EJY08188.1| ribosomal subunit interface protein [Enterococcus faecium E417]
gi|402995828|gb|EJY10252.1| ribosomal subunit interface protein [Enterococcus faecium ERV1]
gi|402999852|gb|EJY14021.1| ribosomal subunit interface protein [Enterococcus faecium E422]
gi|403007572|gb|EJY21138.1| ribosomal subunit interface protein [Enterococcus faecium C621]
gi|403014218|gb|EJY27235.1| ribosomal subunit interface protein [Enterococcus faecium 515]
gi|403036809|gb|EJY48150.1| ribosomal subunit interface protein [Enterococcus faecium 504]
gi|404469010|gb|EKA13851.1| ribosomal subunit interface protein [Enterococcus sp. GMD1E]
gi|410734809|gb|EKQ76727.1| ribosome-associated inhibitor protein Y [Enterococcus sp. GMD5E]
gi|430440475|gb|ELA50725.1| ribosomal subunit interface protein [Enterococcus faecium E0045]
gi|430484012|gb|ELA61047.1| ribosomal subunit interface protein [Enterococcus faecium E0269]
gi|430485482|gb|ELA62388.1| ribosomal subunit interface protein [Enterococcus faecium E0679]
gi|430489478|gb|ELA66092.1| ribosomal subunit interface protein [Enterococcus faecium E0680]
gi|430491688|gb|ELA68140.1| ribosomal subunit interface protein [Enterococcus faecium E0688]
gi|430497557|gb|ELA73594.1| ribosomal subunit interface protein [Enterococcus faecium E1050]
gi|430536499|gb|ELA76867.1| ribosomal subunit interface protein [Enterococcus faecium E1133]
gi|430538110|gb|ELA78409.1| ribosomal subunit interface protein [Enterococcus faecium E1185]
gi|430542593|gb|ELA82701.1| ribosomal subunit interface protein [Enterococcus faecium E1258]
gi|430547009|gb|ELA86951.1| ribosomal subunit interface protein [Enterococcus faecium E1552]
gi|430551951|gb|ELA91701.1| ribosomal subunit interface protein [Enterococcus faecium E1573]
gi|430556893|gb|ELA96384.1| ribosomal subunit interface protein [Enterococcus faecium E1575]
gi|430558358|gb|ELA97777.1| ribosomal subunit interface protein [Enterococcus faecium E1576]
gi|430561769|gb|ELB01023.1| ribosomal subunit interface protein [Enterococcus faecium E1578]
gi|430574156|gb|ELB12934.1| ribosomal subunit interface protein [Enterococcus faecium E1622]
gi|430575384|gb|ELB14100.1| ribosomal subunit interface protein [Enterococcus faecium E1620]
gi|430578420|gb|ELB16972.1| ribosomal subunit interface protein [Enterococcus faecium E1623]
gi|430580580|gb|ELB19047.1| ribosomal subunit interface protein [Enterococcus faecium E1626]
gi|430583156|gb|ELB21545.1| ribosomal subunit interface protein [Enterococcus faecium E1627]
gi|430586260|gb|ELB24521.1| ribosomal subunit interface protein [Enterococcus faecium E1634]
gi|430608466|gb|ELB45712.1| ribosomal subunit interface protein [Enterococcus faecium E2134]
gi|430612496|gb|ELB49536.1| ribosomal subunit interface protein [Enterococcus faecium E2297]
gi|430630516|gb|ELB66871.1| ribosomal subunit interface protein [Enterococcus faecium E1321]
gi|430633694|gb|ELB69848.1| ribosomal subunit interface protein [Enterococcus faecium E1644]
gi|430637689|gb|ELB73688.1| ribosomal subunit interface protein [Enterococcus faecium E2369]
gi|430640618|gb|ELB76452.1| ribosomal subunit interface protein [Enterococcus faecium E4389]
gi|430643124|gb|ELB78880.1| ribosomal subunit interface protein [Enterococcus faecium E2560]
gi|430646272|gb|ELB81763.1| ribosomal subunit interface protein [Enterococcus faecium E6045]
gi|430649281|gb|ELB84667.1| ribosomal subunit interface protein [Enterococcus faecium E6012]
Length = 183
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 18/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ A E+E++N + +IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 DAAALFNEEDENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 282 VYKRKAGGYGVI 293
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|421767330|ref|ZP_16204084.1| Ribosomal subunit interface protein [Lactococcus garvieae DCC43]
gi|407624183|gb|EKF50965.1| Ribosomal subunit interface protein [Lactococcus garvieae DCC43]
Length = 185
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 105/198 (53%), Gaps = 20/198 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+ +N+E+TD++++++E+KVGK + K+ + EV ++++ + + EV
Sbjct: 2 IKFNIRAENVEITDSIRSYIEDKVGK-LNKYFNDGHEVTAYVNIKS----YSDKRYKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAE A+ + ASID V ++R++RK K + + + K P
Sbjct: 57 TV-PAKNVTLRAENMAQDILASIDFVEEKLERQIRKYKTRVN---------RKSKANVPT 106
Query: 219 TQVVEND---ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
++ E EDD +IVR K ++ P+ EA+ Q++ + HDFY F +
Sbjct: 107 GMAFGDEFAPLAAADEVEDDKV--KIVRTKRIDLKPMDAEEAVLQMDMLGHDFYVFLDAY 164
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVY+R G G+I
Sbjct: 165 TESTSIVYRRTDGNIGLI 182
>gi|227876266|ref|ZP_03994382.1| ribosome-associated inhibitor protein Y [Mobiluncus mulieris ATCC
35243]
gi|269977981|ref|ZP_06184934.1| ribosome-associated protein Y [Mobiluncus mulieris 28-1]
gi|306819541|ref|ZP_07453248.1| ribosomal subunit interface protein [Mobiluncus mulieris ATCC
35239]
gi|307701250|ref|ZP_07638272.1| ribosomal subunit interface protein [Mobiluncus mulieris FB024-16]
gi|227843227|gb|EEJ53420.1| ribosome-associated inhibitor protein Y [Mobiluncus mulieris ATCC
35243]
gi|269933828|gb|EEZ90409.1| ribosome-associated protein Y [Mobiluncus mulieris 28-1]
gi|304647833|gb|EFM45151.1| ribosomal subunit interface protein [Mobiluncus mulieris ATCC
35239]
gi|307613644|gb|EFN92891.1| ribosomal subunit interface protein [Mobiluncus mulieris FB024-16]
Length = 209
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 21/207 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+++ ++ +N E+ + +VEEK+ K V + + + VDV L+ + PR
Sbjct: 1 MEITLKARNAEIHPNFREYVEEKIAK-VEQLAPRTQRVDVELT-----HERNPRQVDTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNRLK 213
R E+T+ K VVRAE + YA++D+ + + +LR+ +++ +H R+ + L
Sbjct: 55 RIEITVHGKG-PVVRAEASSSDRYAAVDIAAGKLYERLRRARDRIKNHRRYDIPPDVDLD 113
Query: 214 VREPVTQVVENDADVQS-----EEEDDNFVDE--IVRMKFFEMPPLTVSEAIEQLENVDH 266
V P Q A V++ E +D D IVR K E P++V EA++++E V H
Sbjct: 114 VAMPEPQA--KPAPVRAPLKPGEVREDQLGDSPVIVREKLHETTPVSVEEALDEMELVGH 171
Query: 267 DFYGFRNEETGEINIVYKRKAGGYGVI 293
FY F + ET + +VY R+ YGVI
Sbjct: 172 PFYLFIDSETMQPAVVYHRQGWTYGVI 198
>gi|220913184|ref|YP_002488493.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Arthrobacter chlorophenolicus A6]
gi|219860062|gb|ACL40404.1| sigma 54 modulation protein/ribosomal protein S30EA [Arthrobacter
chlorophenolicus A6]
Length = 241
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 104/215 (48%), Gaps = 23/215 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ +I G+NL ++D + + EK+ K + V+ VD ++S G ++ EV
Sbjct: 1 MEFMISGRNLTVSDRFREYAGEKISK-IESLGDKVQRVDAKVSKETNARQTGDQLT-VEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHMKGFNR------ 211
T+ + V+RAE A +A+ DL + + +LR+ K+ K+ HGRH R
Sbjct: 59 TVLGRG-PVIRAEASAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKAVREATASL 117
Query: 212 --LKVREPVTQVVENDADVQSEEED------DNFVDE-----IVRMKFFEMPPLTVSEAI 258
EP+ + ++ + D DN + ++R K F LT+ +A+
Sbjct: 118 EPASAHEPLYMEASHRSEASASSADRSPYDVDNDIPAGDSPVLIRRKVFPAASLTLDDAV 177
Query: 259 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ +E V HDFY F ++ T ++VY+R+ YGVI
Sbjct: 178 DNMELVGHDFYLFVDKATNTPSVVYRRRGWTYGVI 212
>gi|170017878|ref|YP_001728797.1| ribosome-associated protein Y (PSrp-1) [Leuconostoc citreum KM20]
gi|414596230|ref|ZP_11445806.1| Ribosomal subunit interface protein [Leuconostoc citreum LBAE E16]
gi|421876076|ref|ZP_16307636.1| Ribosomal subunit interface protein [Leuconostoc citreum LBAE C10]
gi|421878455|ref|ZP_16309935.1| Ribosomal subunit interface protein [Leuconostoc citreum LBAE C11]
gi|169804735|gb|ACA83353.1| Ribosome-associated protein Y (PSrp-1) [Leuconostoc citreum KM20]
gi|372558111|emb|CCF23756.1| Ribosomal subunit interface protein [Leuconostoc citreum LBAE C10]
gi|390447582|emb|CCF26055.1| Ribosomal subunit interface protein [Leuconostoc citreum LBAE C11]
gi|390483163|emb|CCF27867.1| Ribosomal subunit interface protein [Leuconostoc citreum LBAE E16]
Length = 182
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 110/191 (57%), Gaps = 19/191 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+ +TD ++++VE+++ K + ++ + +++R K + EVT+
Sbjct: 6 VRGENIAVTDALRDYVEKRLTKL---NRYIEEKSSANVNLRTY---KSDNSGKAEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ +YA++D VS ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTNPDLYAAVDAVSEKLERQIRKYKTK----------INR-KSRETGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
++ ++ + + DD + +IVR K ++ P++ EA Q++ + H+F+ FR+ +T +++
Sbjct: 108 DSKNEIPATDSDDEAL-QIVRTKQVDLKPMSPEEAALQMDLLGHNFFIFRDADTNTDSVI 166
Query: 283 YKRKAGGYGVI 293
YKR+ G YG++
Sbjct: 167 YKRQDGKYGLL 177
>gi|429727778|ref|ZP_19262535.1| ribosomal subunit interface protein [Peptostreptococcus anaerobius
VPI 4330]
gi|429151629|gb|EKX94490.1| ribosomal subunit interface protein [Peptostreptococcus anaerobius
VPI 4330]
Length = 183
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 104/195 (53%), Gaps = 15/195 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+++ GK + LT+ + ++++K K L + ++R++V + K ++ EV
Sbjct: 1 MKILVTGKKIRLTEGINGYIDKKFSKL---EKLLSEDTELRVTVSANKKEK----QKVEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
TL +VRAE+ E +Y++ID+V + R++ K K K + E +
Sbjct: 54 TLDNINGHIVRAEDVQEDLYSAIDVVCDKLNRQIVKYKHKFKSRASGNETIRFENFNELL 113
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ +E + ED V E R K F++ P++ EA+ Q+ + HDF+ F++++T E
Sbjct: 114 EEEIE------AVPEDSELVFE--RRKKFDIRPMSPEEAVLQMNLLGHDFFLFKDQDTFE 165
Query: 279 INIVYKRKAGGYGVI 293
+ +VY+R GGYG+I
Sbjct: 166 VCLVYRRGDGGYGLI 180
>gi|443289003|ref|ZP_21028097.1| Sigma 54 modulation protein / SSU ribosomal protein S30P
[Micromonospora lupini str. Lupac 08]
gi|385887681|emb|CCH16171.1| Sigma 54 modulation protein / SSU ribosomal protein S30P
[Micromonospora lupini str. Lupac 08]
Length = 210
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 25/213 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV EK+ K V ++ H + +DV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHYRVHVAEKLAK-VERYDHKIIRIDVELF-----HERNPRQADHCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDL-VSSIIQRKLRKIKEKESDHGRHMK-GFNRL 212
R E+T ++ V+RAE Y+++D ++ + R R + GRH
Sbjct: 55 RVEITCVSRG-PVIRAEACTNDFYSALDAAIAKLDTRLRRAADRRRVHRGRHAPISVAAA 113
Query: 213 KVREPVTQVVE------------NDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQ 260
PVT +V A + EE+ + I R K P+T+ +A+ Q
Sbjct: 114 TADLPVTDLVAAPLSAPSAGARAGTAVAERVEEEHDQPWHIAREKVHPAEPMTIDDALFQ 173
Query: 261 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+E V HDFY F+++ETG ++VY+R A YG+I
Sbjct: 174 MELVGHDFYLFQDKETGRPSVVYRRHAYDYGII 206
>gi|399527913|ref|ZP_10767592.1| ribosomal subunit interface protein [Actinomyces sp. ICM39]
gi|398361572|gb|EJN45322.1| ribosomal subunit interface protein [Actinomyces sp. ICM39]
Length = 214
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 110/215 (51%), Gaps = 27/215 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K + R VDV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQR-VDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRLK 213
R E+T++ K ++RAE + YA++D+ + + +LR+++++ DH R + + +
Sbjct: 55 RIELTVYGKG-PIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDHRRRYPRDLAEAE 113
Query: 214 VRE-PVTQVV-----ENDADVQSEEE-------DDNFVDE--IVRMKFFEMPPLTVSEAI 258
+ E PV + V E ++S E+ ++ + D IVR K E PP++V EA+
Sbjct: 114 ILEAPVVEEVAAPEPEAPKPLRSAEDLKVGEAREEQWGDTPIIVRQKVHEAPPMSVDEAL 173
Query: 259 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+Q+ V H F+ F +++T + +VY R YGV+
Sbjct: 174 DQMMMVGHPFFLFVDKDTNQPCVVYHRHGWTYGVL 208
>gi|315924853|ref|ZP_07921070.1| ribosomal subunit interface protein [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315621752|gb|EFV01716.1| ribosomal subunit interface protein [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 185
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I GKN+ +++ +K+ +++K K + +E ++ + F K + EV
Sbjct: 8 MKFTIYGKNMHVSEGLKDILKKKFQKF---DRYFDKETEIYAT-----FSKDKNGQMLEV 59
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K ++RAEE ++ + +SI+ V ++ +LRK K K R+ +L +
Sbjct: 60 TIPLGK-TILRAEEWSDDMKSSIEAVVDKLEGQLRKYKTKL--QKRYANEAPKL-----I 111
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
E++ D +S + V ++VR K F + P++V EA Q++ ++HDF+ F N ET +
Sbjct: 112 FDAFEDEEDAESVD-----VPKVVRTKKFAIKPMSVDEATMQMDLLEHDFFVFLNAETDD 166
Query: 279 INIVYKRKAGGYGVIIP 295
+N+VY+R G +G+I P
Sbjct: 167 VNVVYRRHDGNFGLIEP 183
>gi|242279720|ref|YP_002991849.1| sigma 54 modulation protein/ribosomal protein S30EA [Desulfovibrio
salexigens DSM 2638]
gi|242122614|gb|ACS80310.1| sigma 54 modulation protein/ribosomal protein S30EA [Desulfovibrio
salexigens DSM 2638]
Length = 178
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 30/152 (19%)
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
+ R +F+ H V A E +E +Y+++D+V ++ +LR+ EK H R R
Sbjct: 47 KFRHVAEVVFSSDHMHVSAYEVSEDMYSTVDMVLDKLEAQLRRANEKMRSHRRKEAAPAR 106
Query: 212 LKV--------REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLEN 263
+ + REPV +VE+D+ F P++V EA EQL+
Sbjct: 107 MDILSYGEEEYREPV--IVESDS--------------------FVPKPMSVDEAAEQLQT 144
Query: 264 VDHDFYGFRNEETGEINIVYKRKAGGYGVIIP 295
+DH+F FRN + IN++Y+R G +G+I P
Sbjct: 145 LDHEFLVFRNADNEAINVIYRRNNGDFGLIDP 176
>gi|433448441|ref|ZP_20411373.1| ribosome-associated protein Y (PSrp-1) [Weissella ceti NC36]
gi|429539912|gb|ELA07946.1| ribosome-associated protein Y (PSrp-1) [Weissella ceti NC36]
Length = 182
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 102/196 (52%), Gaps = 28/196 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD----VRLSV-RGGEFGKGPRIRRCE 157
++G N E+T+ ++ +VE++V K + + D V+L+ + +F E
Sbjct: 6 VRGINFEVTEAIQEYVEKRVSKL---ERYFKDDADYTAHVKLTANKNKQFT-------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
V + T + +VRAE+ E +Y +ID V ++R++RK K K + R KG+ L+
Sbjct: 56 VLIQTP-YVLVRAEDTQEDLYQAIDFVVEKLERQVRKYKTKVNRKSRE-KGYKGLEF--- 110
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
+ D+ EE +D+ IVR K E+ P+ EA+ Q+E + HDFY F N ET
Sbjct: 111 ------DVEDIDIEEPEDSL--NIVRKKSVELKPMDPEEAVLQMELLQHDFYIFINAETD 162
Query: 278 EINIVYKRKAGGYGVI 293
+ +VYKRK Y ++
Sbjct: 163 QPGVVYKRKDNKYALL 178
>gi|333024921|ref|ZP_08452985.1| putative S30AE family protein [Streptomyces sp. Tu6071]
gi|332744773|gb|EGJ75214.1| putative S30AE family protein [Streptomyces sp. Tu6071]
Length = 292
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 27/216 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 57 IDIVVKGRKTEVPERFRKHVAEKLNVEKIQKLDGKVMSLDVEVS-KEHNPRQADRCDRVE 115
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + + ++RK E D R +G RL E
Sbjct: 116 ITLRSRGP-VIRAEACAADPYAALDLAVAKLAARMRK----EHDKRRTRRGSERLTAAEV 170
Query: 217 ----PVTQVVENDAD-VQSEEEDDNFVDE--------------IVRMKFFEMPPLTVSEA 257
P T + D + E E D V +VR K P+++ +A
Sbjct: 171 AERVPGTAGLNEDGSFAEPEPESDGGVPTKKVGSLEVQGDGPLVVREKTHLAAPMSLDQA 230
Query: 258 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 231 LYEMELVGHDFYLFVDAETKEPSVVYRRHAYDYGVI 266
>gi|422883555|ref|ZP_16930004.1| ribosomal subunit interface protein, partial [Streptococcus
sanguinis SK49]
gi|332362999|gb|EGJ40788.1| ribosomal subunit interface protein [Streptococcus sanguinis SK49]
Length = 179
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 111/195 (56%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 LKYSIRGENLEVTDALRDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ NR KV
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVTDKIERQIRKNKTK-------IERKNRNKV--AT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+Q+ + ++EE ++VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 107 SQLFTDSFAEEAEE----VPSKVVRSKHIDLKPMDLEEAILQMDLLGHDFFIYSDAEDSS 162
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 163 TNVIYRREDGDIGLL 177
>gi|125718633|ref|YP_001035766.1| 30S ribosomal interface protein S30EA [Streptococcus sanguinis
SK36]
gi|422826956|ref|ZP_16875135.1| ribosomal subunit interface protein [Streptococcus sanguinis SK678]
gi|422847328|ref|ZP_16894011.1| ribosomal subunit interface protein [Streptococcus sanguinis SK72]
gi|422850313|ref|ZP_16896989.1| ribosomal subunit interface protein [Streptococcus sanguinis SK115]
gi|422853170|ref|ZP_16899834.1| ribosomal subunit interface protein [Streptococcus sanguinis SK160]
gi|422856780|ref|ZP_16903434.1| ribosomal subunit interface protein [Streptococcus sanguinis SK1]
gi|422857803|ref|ZP_16904453.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1057]
gi|422861260|ref|ZP_16907901.1| ribosomal subunit interface protein [Streptococcus sanguinis SK330]
gi|422863869|ref|ZP_16910498.1| ribosomal subunit interface protein [Streptococcus sanguinis SK408]
gi|422864290|ref|ZP_16910915.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1058]
gi|422878143|ref|ZP_16924613.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1056]
gi|422879985|ref|ZP_16926449.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1059]
gi|422880576|ref|ZP_16927032.1| ribosomal subunit interface protein [Streptococcus sanguinis SK355]
gi|422930408|ref|ZP_16963347.1| ribosomal subunit interface protein [Streptococcus sanguinis ATCC
29667]
gi|422930999|ref|ZP_16963930.1| ribosomal subunit interface protein [Streptococcus sanguinis SK340]
gi|125498550|gb|ABN45216.1| 30S ribosomal interface protein S30EA, putative [Streptococcus
sanguinis SK36]
gi|324994060|gb|EGC25974.1| ribosomal subunit interface protein [Streptococcus sanguinis SK678]
gi|325686905|gb|EGD28929.1| ribosomal subunit interface protein [Streptococcus sanguinis SK72]
gi|325688793|gb|EGD30802.1| ribosomal subunit interface protein [Streptococcus sanguinis SK115]
gi|325697722|gb|EGD39607.1| ribosomal subunit interface protein [Streptococcus sanguinis SK160]
gi|327459266|gb|EGF05612.1| ribosomal subunit interface protein [Streptococcus sanguinis SK1]
gi|327462465|gb|EGF08790.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1057]
gi|327467199|gb|EGF12703.1| ribosomal subunit interface protein [Streptococcus sanguinis SK330]
gi|327472692|gb|EGF18119.1| ribosomal subunit interface protein [Streptococcus sanguinis SK408]
gi|327490484|gb|EGF22265.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1058]
gi|332358071|gb|EGJ35904.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1056]
gi|332364561|gb|EGJ42330.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1059]
gi|332366347|gb|EGJ44098.1| ribosomal subunit interface protein [Streptococcus sanguinis SK355]
gi|339613902|gb|EGQ18624.1| ribosomal subunit interface protein [Streptococcus sanguinis ATCC
29667]
gi|339620975|gb|EGQ25543.1| ribosomal subunit interface protein [Streptococcus sanguinis SK340]
Length = 180
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 111/195 (56%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 LKYSIRGENLEVTDALRDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ NR KV
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVTDKIERQIRKNKTK-------IERKNRNKV--AT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+Q+ + ++EE ++VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 107 SQLFTDSFAEEAEE----VPSKVVRSKHIDLKPMDLEEAILQMDLLGHDFFIYSDAEDSS 162
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 163 TNVIYRREDGDIGLL 177
>gi|116671254|ref|YP_832187.1| 30S ribosomal protein S30P / sigma 54 modulation protein
[Arthrobacter sp. FB24]
gi|116611363|gb|ABK04087.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Arthrobacter sp. FB24]
Length = 241
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ +I G+NL ++D + + +EK+ K + V+ VD ++S + + + + E+
Sbjct: 1 MEFMISGRNLTVSDRFREYADEKISK-IASLGDKVQRVDAKVS-KETKARQTAELLTVEL 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHM--------KGF 209
T+ + V+RAE A +A+ DL + + +LR+ K+ K+ HGRH
Sbjct: 59 TVLGRG-PVIRAEASAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKSVTEATASL 117
Query: 210 NRLKVREPVTQVVENDADVQ------SEEEDDNFVDE-----IVRMKFFEMPPLTVSEAI 258
EP+ N + Q S + DN + ++R K F LT+ +A+
Sbjct: 118 EPASTTEPLYVEASNHQEPQAAPVEKSPYDVDNDIPAGDSPVLIRRKVFPAASLTLDDAV 177
Query: 259 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ +E V HDFY F ++ET ++VY+R YGVI
Sbjct: 178 DNMELVGHDFYLFVDKETKAPSVVYRRDGWTYGVI 212
>gi|227893183|ref|ZP_04010988.1| ribosome-associated inhibitor protein Y [Lactobacillus ultunensis
DSM 16047]
gi|227865049|gb|EEJ72470.1| ribosome-associated inhibitor protein Y [Lactobacillus ultunensis
DSM 16047]
Length = 181
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 110/195 (56%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELSQDVIAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE+ + +Y SID VS ++R++RK K + NR K RE
Sbjct: 57 TI-PLPYLVLRAEENTDDMYRSIDFVSEKLERQIRKYKTR----------VNR-KSREKG 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
Q + + E++ F +IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 105 MQDFFVEQPEEEEKKPSEF--DIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETNG 162
Query: 279 INIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 163 TSVVYRRNDGRYGLI 177
>gi|423684071|ref|ZP_17658910.1| hypothetical protein MUY_03924 [Bacillus licheniformis WX-02]
gi|383440845|gb|EID48620.1| hypothetical protein MUY_03924 [Bacillus licheniformis WX-02]
Length = 186
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 100/199 (50%), Gaps = 25/199 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ HVE+K+GK + VD + V + + EVT+
Sbjct: 5 VRGENIEVTPALREHVEKKIGKL---ERYFENNVDAIVHVNLKFYNDQES--KVEVTIPM 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PVT 219
+ RAE E +Y +IDL ++ ++R++RK K K NR K RE P
Sbjct: 60 TDLSL-RAEVHHEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREKGSPKH 107
Query: 220 QVVENDA---DVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
E + VQ + ED+ ++VR K F + P+ EAI Q+ + H F+ F N ET
Sbjct: 108 VFAEGNGIGTAVQEDIEDEQ--PQVVRQKRFNLKPMDNEEAILQMNMLGHSFFVFTNAET 165
Query: 277 GEINIVYKRKAGGYGVIIP 295
N+VY+R G YG+I P
Sbjct: 166 NLTNVVYRRNDGKYGLIEP 184
>gi|436841972|ref|YP_007326350.1| Sigma 54 modulation protein/ribosomal protein S30EA [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432170878|emb|CCO24249.1| Sigma 54 modulation protein/ribosomal protein S30EA [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 179
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 21/161 (13%)
Query: 135 EVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK 194
E+ V LSV + R + + H + A E++E +Y+++DLV ++ +LR+
Sbjct: 38 EMQVNLSV--------DKFRHVAEVVLSSDHIHISAYEESEDMYSTVDLVLDKLEVQLRR 89
Query: 195 IKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTV 254
++EK H R R+ V + +EED+N IV F P+++
Sbjct: 90 MREKMRSHRRKEVTSARMDV-------------ISFDEEDENREPVIVESDSFVPKPMSI 136
Query: 255 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIP 295
EA QL+ +DH+F FRN + IN++Y+R G +G+I P
Sbjct: 137 DEAAMQLQTLDHEFLVFRNADNEAINVIYRRNNGDFGLIDP 177
>gi|225868030|ref|YP_002743978.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus equi subsp. zooepidemicus]
gi|225701306|emb|CAW98316.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus equi subsp. zooepidemicus]
Length = 182
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 108/198 (54%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R +++ E
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHREKVSTSQVFTSEFE 115
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ VE +++ +VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 116 AEQVEETPEIK-----------VVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDAEDGA 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++Y+R+ G G+I K
Sbjct: 165 TNVLYRREDGDLGLIEAK 182
>gi|302023440|ref|ZP_07248651.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis 05HAS68]
Length = 180
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 111/196 (56%), Gaps = 24/196 (12%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
K I+G+NLE+T+ ++ +VEEKV K + K+ + +E++ ++++ K R +R +V
Sbjct: 3 KFSIRGENLEVTEALRTYVEEKVAK-IEKYFNEEQELNAKVNL------KVYRDKRAKVE 55
Query: 160 LFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVREP 217
+ V +RAE+ ++ +Y SIDLV I+R++R+ K K E H R KV
Sbjct: 56 VTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKH--------RQKV--A 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
QV ++ Q+ EE ++VR K ++ P+ + EA+ QLE + HDF+ + + G
Sbjct: 106 TGQVFTDELVEQTGEEV-----KVVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDANDG 160
Query: 278 EINIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 161 TTNVLYRREDGDLGLL 176
>gi|69249984|ref|ZP_00605075.1| Sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium DO]
gi|257879879|ref|ZP_05659532.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,230,933]
gi|257884037|ref|ZP_05663690.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,501]
gi|389869213|ref|YP_006376636.1| ribosome-associated inhibitor protein Y [Enterococcus faecium DO]
gi|424966086|ref|ZP_18379930.1| ribosomal subunit interface protein [Enterococcus faecium P1190]
gi|424975037|ref|ZP_18388230.1| ribosomal subunit interface protein [Enterococcus faecium P1137]
gi|424980978|ref|ZP_18393734.1| ribosomal subunit interface protein [Enterococcus faecium ERV99]
gi|425021271|ref|ZP_18431538.1| ribosomal subunit interface protein [Enterococcus faecium C497]
gi|425025990|ref|ZP_18434757.1| ribosomal subunit interface protein [Enterococcus faecium C1904]
gi|425044675|ref|ZP_18448816.1| ribosomal subunit interface protein [Enterococcus faecium 510]
gi|425051788|ref|ZP_18455430.1| ribosomal subunit interface protein [Enterococcus faecium 506]
gi|430831061|ref|ZP_19449114.1| ribosomal subunit interface protein [Enterococcus faecium E0333]
gi|430855238|ref|ZP_19472947.1| ribosomal subunit interface protein [Enterococcus faecium E1392]
gi|431414451|ref|ZP_19512270.1| ribosomal subunit interface protein [Enterococcus faecium E1630]
gi|431546349|ref|ZP_19518974.1| ribosomal subunit interface protein [Enterococcus faecium E1731]
gi|431637445|ref|ZP_19523214.1| ribosomal subunit interface protein [Enterococcus faecium E1904]
gi|431755190|ref|ZP_19543844.1| ribosomal subunit interface protein [Enterococcus faecium E2883]
gi|431759665|ref|ZP_19548276.1| ribosomal subunit interface protein [Enterococcus faecium E3346]
gi|447912253|ref|YP_007393665.1| Ribosomal subunit interface protein [Enterococcus faecium NRRL
B-2354]
gi|68194045|gb|EAN08596.1| Sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium DO]
gi|257814107|gb|EEV42865.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,230,933]
gi|257819875|gb|EEV47023.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,501]
gi|388534462|gb|AFK59654.1| ribosome-associated inhibitor protein Y [Enterococcus faecium DO]
gi|402941829|gb|EJX60499.1| ribosomal subunit interface protein [Enterococcus faecium P1190]
gi|402954953|gb|EJX72528.1| ribosomal subunit interface protein [Enterococcus faecium P1137]
gi|402964805|gb|EJX81562.1| ribosomal subunit interface protein [Enterococcus faecium ERV99]
gi|403006056|gb|EJY19728.1| ribosomal subunit interface protein [Enterococcus faecium C1904]
gi|403007275|gb|EJY20863.1| ribosomal subunit interface protein [Enterococcus faecium C497]
gi|403029069|gb|EJY40844.1| ribosomal subunit interface protein [Enterococcus faecium 510]
gi|403036697|gb|EJY48039.1| ribosomal subunit interface protein [Enterococcus faecium 506]
gi|430481932|gb|ELA59073.1| ribosomal subunit interface protein [Enterococcus faecium E0333]
gi|430547244|gb|ELA87180.1| ribosomal subunit interface protein [Enterococcus faecium E1392]
gi|430589184|gb|ELB27329.1| ribosomal subunit interface protein [Enterococcus faecium E1630]
gi|430591668|gb|ELB29697.1| ribosomal subunit interface protein [Enterococcus faecium E1731]
gi|430602329|gb|ELB39904.1| ribosomal subunit interface protein [Enterococcus faecium E1904]
gi|430617190|gb|ELB54064.1| ribosomal subunit interface protein [Enterococcus faecium E2883]
gi|430625846|gb|ELB62449.1| ribosomal subunit interface protein [Enterococcus faecium E3346]
gi|445187962|gb|AGE29604.1| Ribosomal subunit interface protein [Enterococcus faecium NRRL
B-2354]
Length = 183
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K + R G N +
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRET-GMNTANAAALFNEED 118
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
EN+ D + + IVR K + P+ EA+ Q+ + H+F+ F + ET +IV
Sbjct: 119 ENENDSELD---------IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSIV 169
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 170 YRRKDGKYGLI 180
>gi|238063014|ref|ZP_04607723.1| 30S ribosomal protein S30EA [Micromonospora sp. ATCC 39149]
gi|237884825|gb|EEP73653.1| 30S ribosomal protein S30EA [Micromonospora sp. ATCC 39149]
Length = 211
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 26/214 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV EK+ K + ++ H + VDV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHYRVHVAEKLAK-IERYDHKLIRVDVELF-----HERNPRQSDHCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDL-VSSIIQRKLRKIKEKESDHGRH-------- 205
R E+T ++ V+RAE + Y+++D ++ + R R + GRH
Sbjct: 55 RVEITCVSRG-PVIRAEACTDDFYSALDAAIAKLDNRLRRAADRRRVHRGRHAPISVAAA 113
Query: 206 -----MKGFNR-LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIE 259
+ G + + + V + EEE D+ I R K P+TV +A+
Sbjct: 114 TADLPVAGLDAPVPALDGVRSATATAVAERFEEEPDDQPWHIARAKVHPAEPMTVDDALF 173
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
Q+E V HDFY F ++E+G ++VY+R A YG+I
Sbjct: 174 QMELVGHDFYLFHDKESGRPSVVYRRHAYDYGII 207
>gi|419841380|ref|ZP_14364752.1| ribosomal subunit interface protein [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|386905314|gb|EIJ70083.1| ribosomal subunit interface protein [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
Length = 180
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLS---VRGGEFGKGPRIRR 155
+KL IQGK L LTD +K + E K K H ++ E++V LS ++ G +
Sbjct: 1 MKLSIQGKRLVLTDAIKAYAERKFEKVEKFHDGIL-EINVTLSAVKLKTGNY------HS 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EV + ++A E +Y +ID + ++ +L+K K+K + KG K
Sbjct: 54 AEVLAYLSGK-TLKATSTEEDLYFAIDQAADALEVQLKKHKDK-NKRANSQKGGKSWKF- 110
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+P + +V N +E+ V ++ K P+++ EA+ QLE +D F+ F++ E
Sbjct: 111 DPESGIVTN-------QEERRMVKVLLPKK-----PMSMEEALLQLEVLDKQFFAFKSLE 158
Query: 276 TGEINIVYKRKAGGYGVII 294
TG+++IVYKRK G YG II
Sbjct: 159 TGKMSIVYKRKDGDYGYII 177
>gi|424780246|ref|ZP_18207126.1| Ribosomal subunit interface protein [Catellicoccus marimammalium
M35/04/3]
gi|422843204|gb|EKU27645.1| Ribosomal subunit interface protein [Catellicoccus marimammalium
M35/04/3]
Length = 189
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 106/195 (54%), Gaps = 13/195 (6%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
K +I+G+N+E+TD ++ +VE+K+ K + ++ + V E +++R R + EVT
Sbjct: 3 KYVIRGENIEVTDAIRAYVEKKIDK-LTRYFNQVPEATAHVNLRVY----PERSTKIEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFN-RLKVREPV 218
L + +RAEE +Y+ IDLV ++R+LRK K K + R + F+ L E +
Sbjct: 58 L-PLPYLTLRAEEMNPDLYSGIDLVVDKLERQLRKYKTKINRKMREKEKFSEHLHNLEVL 116
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
E D + ++ D IVR K + P+ EAI Q+ + HDF+ F + + G
Sbjct: 117 AAQEEADEWEEEKQFD------IVRTKHVNVKPMDSEEAILQMNMLGHDFFIFEDVDHGG 170
Query: 279 INIVYKRKAGGYGVI 293
++IVY+RK YG+I
Sbjct: 171 VSIVYRRKDKKYGLI 185
>gi|326693423|ref|ZP_08230428.1| ribosome-associated factor Y [Leuconostoc argentinum KCTC 3773]
Length = 182
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 108/195 (55%), Gaps = 19/195 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+TD + +VE+++ K + ++ + +++R + K + EVT+
Sbjct: 6 VRGENIEVTDALFEYVEKRLTKL---NRYIGEKATANVNLRTYQSDKSDK---AEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE +YA+ID VS ++R++RK K K NR K R + +
Sbjct: 60 P-YVVLRAEAIEPDMYAAIDAVSDKLERQVRKYKTK----------INR-KSRATGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ + ++ E DD+ + ++VR K ++ P++ EA Q++ + H+F+ F++ ET ++
Sbjct: 108 DAEGEIPETEVDDDAI-QVVRTKHVDLKPMSPEEAALQMDLLAHNFFIFKDAETNTDAVI 166
Query: 283 YKRKAGGYGVIIPKG 297
YKRK G YG++ G
Sbjct: 167 YKRKDGRYGLLETAG 181
>gi|383788717|ref|YP_005473286.1| putative ribosome-associated protein [Caldisericum exile AZM16c01]
gi|381364354|dbj|BAL81183.1| putative ribosome-associated protein [Caldisericum exile AZM16c01]
Length = 173
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 110/200 (55%), Gaps = 29/200 (14%)
Query: 99 VKLIIQGKNLE-LTDTVKNHVEEKVGKAVLKHSHLVREVDVRLS-VRGGEFGKGPRIRRC 156
+++ I K +E L D + +++K+GK + K+ +++ +V +S VRG I
Sbjct: 1 MEITITAKGIEKLPDFTEEEIKKKIGK-LEKYFDNIQQANVVISKVRG--------IFEM 51
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F + ++R + ++D V ++ +++K++++ +KG R+ E
Sbjct: 52 EVTIFASQK-IIRGVGKGSLIDEALDNVVEKLETQVKKLRDR-------LKGEKRISKEE 103
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ EEE+ F I ++K F + P+++ EA+ Q+E + HDF+ FR+EET
Sbjct: 104 IFGNI---------EEEESEF-PRITKIKTFPVKPMSLEEAMLQIELLGHDFFIFRDEET 153
Query: 277 GEINIVYKRKAGGYGVIIPK 296
EIN++Y+RK G YG+I P+
Sbjct: 154 NEINVLYRRKDGNYGLIKPQ 173
>gi|50954329|ref|YP_061617.1| sigma-54 modulation protein [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50950811|gb|AAT88512.1| sigma-54 modulation protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 232
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 111/233 (47%), Gaps = 31/233 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV---DVRLSVRGGEFGKGPRIRRCEVT 159
I G+NL +TD + + EK K +HL ++++S + G R E+T
Sbjct: 5 IVGRNLGITDRFREYAAEKSEKV----AHLAERAISFEIKVSRHNEKLGTQNGDDRVELT 60
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRH---------MKGF 209
L + VR+E YA+ D+ + ++R+ K++ H G+H +GF
Sbjct: 61 LVGPR-ATVRSEATGTDKYAAFDIALGKLLERVRRAKDRRKVHRGQHRPTSLREASTQGF 119
Query: 210 NRLKVREPVTQVVEN---------DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQ 260
+ + + V+E AD + ++ + ++R K F P+TV +A+
Sbjct: 120 SAVGLSAASVAVLEQVRTGSVPAIAADAEPVGAEEEYCPVVIRRKVFASVPMTVDDALYY 179
Query: 261 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETAS 313
+E V HDFY F ++ET ++VY+RK YGVI + A++L+ EV TAS
Sbjct: 180 MELVGHDFYLFVDQETKRPSVVYRRKGWDYGVI--SLDDDAEELQ--EVATAS 228
>gi|429758551|ref|ZP_19291065.1| ribosomal subunit interface protein [Actinomyces sp. oral taxon 181
str. F0379]
gi|429173265|gb|EKY14796.1| ribosomal subunit interface protein [Actinomyces sp. oral taxon 181
str. F0379]
Length = 218
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 26/214 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + ++EEK+ K V + + VDV L+ K PR
Sbjct: 1 MDITVAARNAEIHPNFRAYIEEKLAK-VTQFYPRAQRVDVELT-----HQKNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF----- 209
R E+T+F K ++RAE ++ YA++D+ + + +LR+++++ DH R +
Sbjct: 55 RIELTVFGKG-PIIRAEAESADRYAAVDIAAGKLFERLRRMRDRAKDHHRTEEILAPDLD 113
Query: 210 ---------NRLKVREPVTQVVENDADV-QSEEEDDNFVDEIVRMKFFEMPPLTVSEAIE 259
L + P + D V ++ EE IVR K E P++V EA+
Sbjct: 114 VLPASVGEEEELAEQAPTSLKSAGDLKVGEAREEQLGDSPIIVRQKVHETVPMSVDEALN 173
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
Q+E V H F+ F +EET + +VY R YGV+
Sbjct: 174 QMELVGHPFFLFVDEETMQPCVVYHRHGWTYGVL 207
>gi|422294701|gb|EKU22001.1| sigma 54 modulation protein ribosomal protein s30ea
[Nannochloropsis gaditana CCMP526]
Length = 59
Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 241 IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKG 297
+V+ K F+MP ++ ++AI LE + HDFY FRNE++GEIN+VYKRK GG GVI P+
Sbjct: 3 VVKRKQFDMPAMSTADAIVCLEYIGHDFYVFRNEDSGEINVVYKRKLGGVGVIEPRA 59
>gi|302521431|ref|ZP_07273773.1| ribosomal subunit interface protein [Streptomyces sp. SPB78]
gi|302430326|gb|EFL02142.1| ribosomal subunit interface protein [Streptomyces sp. SPB78]
Length = 246
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 27/216 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 11 IDIVVKGRKTEVPERFRKHVAEKLNVEKIQKLDGKVMSLDVEVS-KEHNPRQADRCDRVE 69
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + + ++RK E D R +G RL E
Sbjct: 70 ITLRSRG-PVIRAEACAADPYAALDLAVAKLAARMRK----EHDKRRTRRGSERLTAAEV 124
Query: 217 ----PVTQVVENDAD-VQSEEEDDNFVDE--------------IVRMKFFEMPPLTVSEA 257
P T + D + E E D V +VR K P+++ +A
Sbjct: 125 AERVPGTAGLNEDGSFAEPEPESDGGVPTKKVGSLEVQGDGPLVVREKTHLAAPMSLDQA 184
Query: 258 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 185 LYEMELVGHDFYLFVDAETKEPSVVYRRHAYDYGVI 220
>gi|315502062|ref|YP_004080949.1| sigma 54 modulation protein/ribosomal protein s30ea [Micromonospora
sp. L5]
gi|315408681|gb|ADU06798.1| sigma 54 modulation protein/ribosomal protein S30EA [Micromonospora
sp. L5]
Length = 214
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 31/218 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV EK+ K L+R VDV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHYRVHVAEKLAKIERYDQKLIR-VDVELF-----HERNPRQADTCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDL-VSSIIQRKLRKIKEKESDHGRHMK------ 207
R E+T T+ V+RAE Y+++D ++ + R R + GRH
Sbjct: 55 RVEITCVTRG-PVIRAEACTNDFYSALDAAIAKLDTRFRRAADRRRVHRGRHAPISVAAA 113
Query: 208 ------------GFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVS 255
G L T V E + E DD I R K P+TV
Sbjct: 114 TAGLPVADLDGPGLAALDGHGTATAVAERPDESGHTEPDDQPW-HIARAKVHPAEPMTVD 172
Query: 256 EAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+A+ Q+E V HDFY F+++E+G ++VY+R A YG+I
Sbjct: 173 DALFQMELVGHDFYLFQDKESGRPSVVYRRHAYDYGII 210
>gi|293401431|ref|ZP_06645574.1| ribosomal subunit interface protein [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|373452371|ref|ZP_09544285.1| ribosomal subunit interface protein [Eubacterium sp. 3_1_31]
gi|291305069|gb|EFE46315.1| ribosomal subunit interface protein [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|371966638|gb|EHO84123.1| ribosomal subunit interface protein [Eubacterium sp. 3_1_31]
Length = 177
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 106/200 (53%), Gaps = 31/200 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG---KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K+ I GKN+ +T + +E+K+ K + +++ V VR+ P ++
Sbjct: 1 MKVQIYGKNITVTPAIAEKIEKKLNHLEKYFIIDENVIANVVVRVY---------PNKQK 51
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ TK V+RAE + +YA+IDL ++ ++R+ K + + + +
Sbjct: 52 IEVTIPTK-FAVLRAEVVHDDLYAAIDLAIDKLEDQIRRQKTRLTRKNKEKLAY------ 104
Query: 216 EPVTQVVENDADVQSEEEDDNF--VDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
A +++EE D+ + DE+V+ K + + EAI ++E ++H+F+ +R+
Sbjct: 105 ----------AFLETEELDEEYDEADEVVKTKSIVPDTMELDEAIMRMEMLNHNFFIYRD 154
Query: 274 EETGEINIVYKRKAGGYGVI 293
+ET EI +VYKR GGYG+I
Sbjct: 155 DETKEIAVVYKRHDGGYGLI 174
>gi|284029595|ref|YP_003379526.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Kribbella
flavida DSM 17836]
gi|283808888|gb|ADB30727.1| sigma 54 modulation protein/ribosomal protein S30EA [Kribbella
flavida DSM 17836]
Length = 207
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 106/210 (50%), Gaps = 22/210 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G + E++D + +VEEK+ + + K H V +V +S K PR
Sbjct: 1 MDVVVKGHHCEVSDRFRQYVEEKLAR-IEKVDHRVLRCEVEVSQE-----KNPRQHDRAM 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRHM-KGFNRL 212
R E+T++TK VVRAE ET A+ D+ ++ ++RK ++ H G H +G L
Sbjct: 55 RVELTMYTKG-PVVRAEACGETKQAAFDVSLDRLRAQVRKAADRRRVHRGEHAPEGLRHL 113
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDE---------IVRMKFFEMPPLTVSEAIEQLEN 263
++PV + D +E + ++R K P+++ +A+ +LE
Sbjct: 114 NAKQPVNGLAPEAEDSTEDEVPTQKIGSLTVTGDGPLVMREKTHTAKPMSLDQALYELEL 173
Query: 264 VDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
V HDFY F + + + ++VY+R+ YGVI
Sbjct: 174 VGHDFYLFVDADENQPSVVYRRRGYDYGVI 203
>gi|390935742|ref|YP_006393247.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389571243|gb|AFK87648.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 179
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 14/130 (10%)
Query: 167 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ-VVEND 225
+ RAEE ++ +YASID V +++++ K K K ++ F +R V Q ++ND
Sbjct: 61 IFRAEEVSDDMYASIDNVVDKLEKQILKYKTKLKNN------FTPDSIRFDVQQDYIKND 114
Query: 226 ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKR 285
VQ E E E+V+ K F + P++V EAI Q+ + H+F+ F N ET + +VYKR
Sbjct: 115 --VQDESEF-----EVVKTKRFAVKPMSVQEAILQMNLLGHNFFVFTNSETDDFTVVYKR 167
Query: 286 KAGGYGVIIP 295
K G YG+I P
Sbjct: 168 KDGKYGLIEP 177
>gi|357413095|ref|YP_004924831.1| sigma 54 modulation protein/ribosomal protein S30EA [Streptomyces
flavogriseus ATCC 33331]
gi|320010464|gb|ADW05314.1| sigma 54 modulation protein/ribosomal protein S30EA [Streptomyces
flavogriseus ATCC 33331]
Length = 248
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 106/230 (46%), Gaps = 33/230 (14%)
Query: 87 PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGG 145
P + S G V ++++G+ E+ + + HV EK+ + K V +DV +S +
Sbjct: 8 PSKRSDPGTEFCVDIVVKGRKTEVPERFRKHVAEKLKLDKIQKFDGKVISLDVEVS-KEP 66
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
+ R R E+TL ++ V+RAE A YA++DL + + +LRK E D
Sbjct: 67 NPRQADRAARVEITLRSRGP-VIRAEAAAGDPYAALDLATDKLDARLRK----EHDKRYS 121
Query: 206 MKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDE----------------------IVR 243
+G RL E V +VV A D + E +VR
Sbjct: 122 RRGNGRLSASE-VAEVVPGAASFNG---DGELIPEETTPSVPTTRIGSLEVQGEGPLVVR 177
Query: 244 MKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
K P+T+ +A+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 178 EKTHVAAPMTLDQALYEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 227
>gi|256545456|ref|ZP_05472818.1| ribosomal subunit interface protein [Anaerococcus vaginalis ATCC
51170]
gi|256398852|gb|EEU12467.1| ribosomal subunit interface protein [Anaerococcus vaginalis ATCC
51170]
Length = 177
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I+GKN+ + +++K +EK + + K+ + E+D++ S G +++ E
Sbjct: 1 MKLNIKGKNINVYESLKEEAKEKFDR-LDKYFNKEEEMDLKFSTEGN-------LKKVES 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F K ++RAEE + ID V + R++RK K K + R+ +
Sbjct: 53 TIFLKGGTILRAEEVNDNFSTGIDKVIDALVRQIRKQKTKLQRNRRNGESIK-------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
E+ +++ +E++ + +I R K + P++ EA Q+E ++HDF+ + ++E +
Sbjct: 105 ---FESFDNIEEGKEEN--IPKIKRQKEIVLRPMSDEEACMQMELLNHDFFIYLDDEEMK 159
Query: 279 INIVYKRKAGGYGVIIP 295
+VYKRK G YG+IIP
Sbjct: 160 TRLVYKRKDGHYGLIIP 176
>gi|405981406|ref|ZP_11039733.1| ribosomal subunit interface protein [Actinomyces neuii BVS029A5]
gi|404392330|gb|EJZ87390.1| ribosomal subunit interface protein [Actinomyces neuii BVS029A5]
Length = 218
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 51/228 (22%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAV------------LKHSHLVREVDVRLSVRGGE 146
+ +I+ +N E+ + +VEEKV K L H R+ D +
Sbjct: 1 MDIIVNARNAEIHPNFREYVEEKVSKVTQFYPRAQRVNVELNHERNPRQADTAERIELTV 60
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
GKGP V+RAE + YA++D+ + + +LR+ +++ DH
Sbjct: 61 HGKGP---------------VIRAEASSSDRYAAVDIAAGKLYERLRRARDRAKDH---R 102
Query: 207 KGFNRLKVREP------------------VTQVVENDADVQSEEEDDNFVDE---IVRMK 245
KG + +P V + ++ AD+++ EE + + + IVR K
Sbjct: 103 KGVTHQETEKPLDIEALKFELAVEDAPKAVHEETKSVADMKAGEEREEQLGDSPVIVRQK 162
Query: 246 FFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
E +TVSEA+ Q+E V H FY F + ET + +VY+R YGV+
Sbjct: 163 LHEPDRMTVSEALYQMELVGHPFYLFVDTETSQPCVVYRRHGWTYGVL 210
>gi|95928723|ref|ZP_01311469.1| sigma 54 modulation protein/ribosomal protein S30EA [Desulfuromonas
acetoxidans DSM 684]
gi|95135068|gb|EAT16721.1| sigma 54 modulation protein/ribosomal protein S30EA [Desulfuromonas
acetoxidans DSM 684]
Length = 182
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 106/192 (55%), Gaps = 19/192 (9%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CEVTLFTKK 164
++++ ++ V+N+VEEK+ + V K+ + V L+V +IR EV L K
Sbjct: 8 RHMDTSEPVRNYVEEKLVR-VNKYIEEPIDAQVVLTVEK-------KIRHNAEVALVAKG 59
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
+ + E + +YA+ID V ++R+L++ KEK H KG R +T+ +
Sbjct: 60 VTIKASAEVTDDMYAAIDAVVDKLERQLKRYKEKLKRHSSR-KGKER-----DLTKTIYE 113
Query: 225 DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYK 284
A V E+ + +++R F + P++V EA+ Q++ + +F F +++T E+N++Y+
Sbjct: 114 AASV----EEGHPEPKVIRSHSFSIKPMSVDEAVMQMDLLQKEFLVFTDDDTEEVNVIYR 169
Query: 285 RKAGGYGVIIPK 296
RK G YG+I+PK
Sbjct: 170 RKDGNYGLIVPK 181
>gi|133930475|gb|ABO43809.1| ribosome-associated protein Y [Lactobacillus reuteri]
Length = 182
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 109/202 (53%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+++T++++++V +++ + +V +H V L V
Sbjct: 2 LKFNIRGENVQVTESIRDYVVKRISRLQKFFEDSVEATAH------VNLKVYPN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y SIDLV+ ++R++RK K K + R KG
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSIDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
L + + +D D ++ +DD +IVR K + P+ EA+ Q++ + H+F+ F
Sbjct: 108 L-------EFIPSDND-GTDGQDDEL--KIVRTKQVSLKPMDPEEAVLQMDMLGHNFFIF 157
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
++ ET +IVY+R G YG+I
Sbjct: 158 QDAETNGTSIVYRRNDGRYGLI 179
>gi|386344003|ref|YP_006040167.1| ribosomal subunit interface protein [Streptococcus thermophilus JIM
8232]
gi|339277464|emb|CCC19212.1| ribosomal subunit interface protein [Streptococcus thermophilus JIM
8232]
Length = 182
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 108/198 (54%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K V K+ H +E+ R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSK-VEKYFHEDQELHARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T +RAE+ + +Y SIDLV I R++RK K K + K RE V
Sbjct: 57 TIPTGS-VTLRAEDVSLDMYGSIDLVVDKIARQIRKNKTKIAR-----------KYREKV 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ EE ++ E+VR K E+ P+ V EAI Q+E + HDF+ + + E
Sbjct: 105 PTSEMFSTEFNKEEVEEAPAVEVVRTKNIELKPMDVEEAILQMELLGHDFFIYTDSEDHT 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++YKR+ G YG+I K
Sbjct: 165 TNVLYKREDGNYGLIEAK 182
>gi|345016978|ref|YP_004819331.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Thermoanaerobacter wiegelii Rt8.B1]
gi|344032321|gb|AEM78047.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 181
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 40/208 (19%)
Query: 99 VKLIIQGKN-LELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRR 155
+ + + GKN + +TD +++ V + V K + + +VR LSV+ K I
Sbjct: 1 MNITVSGKNGMTVTDGLRDAVIKNVSKL---SKYFTEDTEVRTVLSVQ-----KNNHI-- 50
Query: 156 CEVTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
E+T+ K G++ RAEE ++ +Y SID V I++++ K H +K NR
Sbjct: 51 AEITIPFK--GIIFRAEEVSDDMYVSIDRVVDKIEKQILK-------HKAKLK--NRFGA 99
Query: 215 RE-------PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHD 267
E PV Q + + EEE+ +F EIV+ K F + P++ EAI Q+ + H+
Sbjct: 100 NESIRFEIPPVYQ------EARGEEEEASF--EIVKTKRFPIKPMSPEEAILQMNLLGHN 151
Query: 268 FYGFRNEETGEINIVYKRKAGGYGVIIP 295
F+ F N ET IN+VYKRK G YG+I P
Sbjct: 152 FFVFTNAETDTINVVYKRKDGKYGLIEP 179
>gi|318056753|ref|ZP_07975476.1| hypothetical protein SSA3_02349 [Streptomyces sp. SA3_actG]
gi|318078615|ref|ZP_07985947.1| hypothetical protein SSA3_18356 [Streptomyces sp. SA3_actF]
Length = 238
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 27/216 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 3 IDIVVKGRKTEVPERFRKHVAEKLNVEKIQKLDGKVMSLDVEVS-KEHNPRQADRCDRVE 61
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + + ++RK E D R +G RL E
Sbjct: 62 ITLRSRG-PVIRAEACAADPYAALDLAVAKLAARMRK----EHDKRRTRRGSERLTAAEV 116
Query: 217 ----PVTQVVENDAD-VQSEEEDDNFVDE--------------IVRMKFFEMPPLTVSEA 257
P T + D + E E D V +VR K P+++ +A
Sbjct: 117 AERVPGTAGLNEDGSFAEPEPESDGGVPTKKVGSLEVQGDGPLVVREKTHLAAPMSLDQA 176
Query: 258 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 177 LYEMELVGHDFYLFVDAETKEPSVVYRRHAYDYGVI 212
>gi|445372665|ref|ZP_21426153.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus thermophilus MTCC 5460]
gi|445387669|ref|ZP_21427867.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus thermophilus MTCC 5461]
gi|444751005|gb|ELW75781.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus thermophilus MTCC 5461]
gi|444751206|gb|ELW75971.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus thermophilus MTCC 5460]
Length = 182
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 109/198 (55%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K V K+ H +E+ R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSK-VEKYFHEDQELHARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T +RAE+ + +Y SIDLV I R++RK K K + K RE V
Sbjct: 57 TIPTGS-VTLRAEDVSLDMYGSIDLVVDKIARQIRKNKTKIAR-----------KYREKV 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ EE ++ E+VR+K E+ P+ V EAI Q+E + HDF+ + + E
Sbjct: 105 PTGEMFSTEFNKEEVEEAPAVEVVRIKNIELKPMDVEEAILQMELLGHDFFIYTDSEDHT 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++YKR+ G YG+I K
Sbjct: 165 TNVLYKREDGNYGLIEAK 182
>gi|358445596|ref|ZP_09156194.1| ribosome-associated protein [Corynebacterium casei UCMA 3821]
gi|356608464|emb|CCE54462.1| ribosome-associated protein [Corynebacterium casei UCMA 3821]
Length = 221
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR- 155
++ ++ I G+N+E+ + + V+ K+ K + +D L+ E P RR
Sbjct: 6 TAAQVTITGRNVEVPEHFSDRVKGKLSK--------IERLDPTLTFFHVELQHEPNPRRD 57
Query: 156 -----CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK---EKESDHGRHMK 207
++T K H + RAE ++ YA+++ + ++R LRK+K E R K
Sbjct: 58 AQSERIQITATGKGH-IARAEAKEDSFYAALETAMAKMERSLRKVKVRREATKSGHRARK 116
Query: 208 GFNRLKVREPVTQVVENDADVQSEEEDDNFVD------------EIVRMKFFEMPPLTVS 255
G L E V D + ++ ++ +VD ++VR K P++V
Sbjct: 117 GTGELAA-EIVADAEAAREDQREDQREERYVDPYAETIEDQRPGQVVRSKEHPATPMSVD 175
Query: 256 EAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+A+ ++E V HDFY F NEET ++VY+R A YG+I
Sbjct: 176 DALSEMELVGHDFYLFINEETQRPSVVYRRHAFDYGLI 213
>gi|315917285|ref|ZP_07913525.1| sigma(54) modulation protein [Fusobacterium gonidiaformans ATCC
25563]
gi|317058622|ref|ZP_07923107.1| sigma(54) modulation protein [Fusobacterium sp. 3_1_5R]
gi|313684298|gb|EFS21133.1| sigma(54) modulation protein [Fusobacterium sp. 3_1_5R]
gi|313691160|gb|EFS27995.1| sigma(54) modulation protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 180
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLS---VRGGEFGKGPRIRR 155
+KL IQGK LELTD +K + E K K H ++ E++V LS ++ G +
Sbjct: 1 MKLSIQGKRLELTDAIKAYAERKFEKVEKFHDGIL-EINVTLSAVKLKTGNY------HS 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EV + ++A E +Y +ID + ++ +L+K K+K +G K
Sbjct: 54 AEVLAYLSGK-TLKATSTEEDLYFAIDQAADALEIQLKKHKDKNKRANSQKRG-KSWKF- 110
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+P + VV N +E+ V ++ K P+++ EA+ QLE ++ F+ F++ E
Sbjct: 111 DPESGVVTN-------QEERRMVKVLLPKK-----PMSMEEALLQLEVLEKQFFAFKSLE 158
Query: 276 TGEINIVYKRKAGGYGVII 294
TG+++IVYKRK G YG I+
Sbjct: 159 TGKMSIVYKRKDGDYGYIV 177
>gi|407277816|ref|ZP_11106286.1| hypothetical protein RhP14_15008 [Rhodococcus sp. P14]
Length = 224
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 17/209 (8%)
Query: 93 DGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR 152
+GP + V +++G+N+E+ D + +V EK+ + + + + DV L +
Sbjct: 22 NGPRADV--VVKGRNVEVPDHFRVYVSEKLAR-LERFDPTIFLFDVELQHERNR-RQLKS 77
Query: 153 IRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMKGFNR 211
+R E+T K VVRAE A++ YA+ + V+ ++ +LR+ K++ HG
Sbjct: 78 CQRVEITARAKG-PVVRAEASADSFYAAFESVTDKLEARLRRTKDRRKVHHGEKTP---- 132
Query: 212 LKVREPVTQVVENDA-DVQSEEEDDNFVDE------IVRMKFFEMPPLTVSEAIEQLENV 264
+ V E ++ +D+ + E D + E IVR K P+TV +A+ ++E V
Sbjct: 133 VSVAEATAELARDDSLGISPEISLDQYEPEPSGPGRIVRTKEHTAEPMTVDDALYEMELV 192
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVI 293
HDFY F ++ET ++VY+R A YG+I
Sbjct: 193 GHDFYLFHDKETDSPSVVYRRHAFDYGLI 221
>gi|340755689|ref|ZP_08692357.1| sigma(54) modulation protein [Fusobacterium sp. D12]
gi|421500529|ref|ZP_15947527.1| ribosomal subunit interface protein [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|313686336|gb|EFS23171.1| sigma(54) modulation protein [Fusobacterium sp. D12]
gi|402268151|gb|EJU17536.1| ribosomal subunit interface protein [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 180
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLS---VRGGEFGKGPRIRR 155
+KL IQGK L LTD +K + E K K H ++ E++V LS ++ G +
Sbjct: 1 MKLSIQGKRLVLTDAIKAYAERKFEKVEKFHDGIL-EINVTLSAVKLKTGNY------HS 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EV + ++A E +Y +ID + ++ +L+K K+K + KG K
Sbjct: 54 AEVLAYLSGK-TLKATSTEEDLYFAIDQAADALEVQLKKHKDK-NKRANSQKGGKSWKF- 110
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+P + +V N +E+ V ++ K P+++ EA+ QLE +D F+ F++ E
Sbjct: 111 DPESGIVTN-------QEERRMVKVLLPKK-----PMSMEEALLQLEVLDKQFFAFKSLE 158
Query: 276 TGEINIVYKRKAGGYGVII 294
TG+++IVYKRK G YG I+
Sbjct: 159 TGKMSIVYKRKDGDYGYIL 177
>gi|206895901|ref|YP_002247295.1| ribosomal subunit interface protein [Coprothermobacter
proteolyticus DSM 5265]
gi|206738518|gb|ACI17596.1| ribosomal subunit interface protein [Coprothermobacter
proteolyticus DSM 5265]
Length = 190
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 106/200 (53%), Gaps = 24/200 (12%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+VK+ + GKN+ELT +K ++EEK+G+ + + + V++ V + P + E
Sbjct: 6 NVKIDMVGKNIELTAAIKQYIEEKIGRV---YRYFDPILGVKVVVEKERQAREP-VFDVE 61
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
VTL ++RAE + +YA+ID + ++ +++ KEK +S G ++ L V
Sbjct: 62 VTLDANGR-LIRAEVEDPDLYAAIDKAADKLESNIKRFKEKLFDSRQGGKVEKTTTLNV- 119
Query: 216 EPVTQVVENDADVQSEEEDDNFVDE--IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ EE+ V+E I R K F + P++ EA+ Q+E++ H F+ F +
Sbjct: 120 ----------GSLLGEEK----VEEPLIERRKRFVVLPMSEEEAVLQMESLGHTFFVFMD 165
Query: 274 EETGEINIVYKRKAGGYGVI 293
+TG IVYKRK GYGVI
Sbjct: 166 PDTGNPKIVYKRKKRGYGVI 185
>gi|374709025|ref|ZP_09713459.1| sigma 54 modulation protein / S30EA ribosomal protein
[Sporolactobacillus inulinus CASD]
Length = 181
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 104/196 (53%), Gaps = 23/196 (11%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
LII+G+N+ +T +++++ E+++ K + K+ + + R+++R + EVT+
Sbjct: 3 LIIRGENITVTPSLQDYAEKRISK-LEKYFNEPIKTSARVNLRVHNTDQV-----VEVTI 56
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
+ ++RAE E +Y +ID + ++R+++K H NR K R+ + Q
Sbjct: 57 -PLQGLLLRAEVGEEDLYTAIDGAVTKLERQIKK----------HKTKINR-KSRQGLRQ 104
Query: 221 VVEN---DADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
V+N D E+D ++VR K F P+TV EAI Q++ + H FY F N E
Sbjct: 105 AVQNASSDITATKPTEEDTL--DVVRRKHFVFKPMTVEEAILQMDMLGHSFYVFNNAEDN 162
Query: 278 EINIVYKRKAGGYGVI 293
+VY+RK G YG+I
Sbjct: 163 SAAVVYRRKDGRYGLI 178
>gi|269219047|ref|ZP_06162901.1| S30AE family protein [Actinomyces sp. oral taxon 848 str. F0332]
gi|269212158|gb|EEZ78498.1| S30AE family protein [Actinomyces sp. oral taxon 848 str. F0332]
Length = 212
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 16/208 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++I++G+N E++D + HV EK+ K + + + + VDV ++ + R E+
Sbjct: 1 MEIIVKGRNAEVSDRFRTHVNEKLSK-IEQFAPRAQRVDVEITHEPNP-SQAEVSERIEI 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR---HM--------K 207
T+ K V+RAE A Y ++DL S + +LR+ +++ +H R H+ K
Sbjct: 59 TVIDKG-PVIRAEAAASDRYGALDLASGKLLERLRRARDRRKEHRRSDAHVSAPLTLTPK 117
Query: 208 GFNRLKVREPVTQVVENDADVQSEEEDDNFVDE--IVRMKFFEMPPLTVSEAIEQLENVD 265
N K +E V EE ++ D +VR K +E P++V +A+ ++E V
Sbjct: 118 DVNIPKAKEQAAPEAAKVPTVPGEEVENQLGDSPVVVRQKLYEAQPMSVDQALYEMELVG 177
Query: 266 HDFYGFRNEETGEINIVYKRKAGGYGVI 293
H FY F +EET + VY R YGVI
Sbjct: 178 HPFYLFIDEETKQPCAVYHRHGWTYGVI 205
>gi|149201448|ref|ZP_01878423.1| ribosomal subunit interface protein, putative [Roseovarius sp.
TM1035]
gi|149145781|gb|EDM33807.1| ribosomal subunit interface protein, putative [Roseovarius sp.
TM1035]
Length = 238
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 22/199 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I GK +++ + ++ HV+E++G AV K++ + V S EF CE +
Sbjct: 56 ISGKQIDIGEALQTHVKEELGTAVAKYAERPTDAMVVFSKSASEFA-------CEAIVHL 108
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV---- 218
+A A +YA+ D ++++LR+ K + DH R EPV
Sbjct: 109 STGLTAQASAKAHEIYAAFDACCEKMEKQLRRYKRRLKDHHRDRA--------EPVELFG 160
Query: 219 --TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
T ++ D+ + E E D+ IV ++P L+V EA+ Q+E FR +
Sbjct: 161 ASTYILAGDS-AEPESEPDSLQPIIVAEMETKIPSLSVGEAVMQMELAGAPVLVFRKQGK 219
Query: 277 GEINIVYKRKAGGYGVIIP 295
+N+VY+R+ G G I P
Sbjct: 220 DTVNVVYRREDGNIGWIDP 238
>gi|417919027|ref|ZP_12562570.1| ribosomal subunit interface protein [Streptococcus australis ATCC
700641]
gi|342834827|gb|EGU69087.1| ribosomal subunit interface protein [Streptococcus australis ATCC
700641]
Length = 185
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 113/204 (55%), Gaps = 28/204 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ + ++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIHDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TL----FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
T+ T +RAE+ ++ +Y SIDLV I+R++RK K K ++ NR K
Sbjct: 57 TIPLGSIT-----LRAEDVSQDMYGSIDLVVDKIERQIRKNKTK-------IEKKNRSK- 103
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
T + DA V E+ ++++VR K ++ P+ + EAI Q+E + HDF+ +++
Sbjct: 104 --SATSKIFTDALV----EESVALEKVVRTKTIDIEPMELDEAILQMELLGHDFFIYKDV 157
Query: 275 ETGEINIVYKRKAGGYGVIIPKGN 298
E N++Y+R+ G G++ K N
Sbjct: 158 EDNTTNVIYRREDGDVGLLEVKEN 181
>gi|160893551|ref|ZP_02074335.1| hypothetical protein CLOL250_01105 [Clostridium sp. L2-50]
gi|156864536|gb|EDO57967.1| ribosomal subunit interface protein [Clostridium sp. L2-50]
Length = 170
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 82/151 (54%), Gaps = 34/151 (22%)
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
++ EVT+ K H ++RAE+ ++ +Y SIDLV +I+R++ + K+K D
Sbjct: 43 QKIEVTIPMKGH-IIRAEQVSDDMYVSIDLVLEVIERQVNRHKKKLIDKE---------- 91
Query: 214 VREPVTQVVENDADVQSEEEDDNFVD---------EIVRMKFFEMPPLTVSEAIEQLENV 264
+N A +Q ++FV+ +IVR K F + P+ +A Q++ +
Sbjct: 92 ---------QNAAYLQ-----NSFVEEETDEDDEIKIVRCKKFAVKPMYPEDACIQMDLL 137
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVIIP 295
H+FY FRN ET E+N+VYKRK YG+I P
Sbjct: 138 GHNFYVFRNAETEEVNVVYKRKGNTYGLIEP 168
>gi|427396511|ref|ZP_18889270.1| ribosomal subunit interface protein [Enterococcus durans
FB129-CNAB-4]
gi|431742781|ref|ZP_19531665.1| ribosomal subunit interface protein [Enterococcus faecium E2071]
gi|425723181|gb|EKU86072.1| ribosomal subunit interface protein [Enterococcus durans
FB129-CNAB-4]
gi|430607750|gb|ELB45051.1| ribosomal subunit interface protein [Enterococcus faecium E2071]
Length = 183
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 16/191 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K + R G N +
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRET-GMNTANAAVLFNEED 118
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
EN+ D + + IVR K + P+ EA+ Q+ + H+F+ F + ET +IV
Sbjct: 119 ENENDSELD---------IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSIV 169
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 170 YRRKDGKYGLI 180
>gi|325675699|ref|ZP_08155383.1| S30AE family protein [Rhodococcus equi ATCC 33707]
gi|325553670|gb|EGD23348.1| S30AE family protein [Rhodococcus equi ATCC 33707]
Length = 221
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 104/199 (52%), Gaps = 5/199 (2%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
++ +++++G+N+E+ + + +V EK+ + + + + DV L + +R
Sbjct: 23 NNAEIVVKGRNVEVPEHFRVYVSEKLAR-LERFDPTIFHFDVELQHERNR-RQAKSCQRV 80
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
E+T K V RAE A++ YA+ + V++ ++ +LR+ K++ H + +
Sbjct: 81 EITA-RGKGPVARAEASADSFYAAFESVTAKLESRLRRTKDRRKVHYGEKTPVSVAQATA 139
Query: 217 PVTQ--VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ Q + D D+ + E +IVR K P+TV +A+ ++E V HDFY F ++
Sbjct: 140 ALAQDDSLAIDRDLSLDGEAPPGPGQIVRTKVHSASPMTVDDALYEMELVGHDFYLFHDK 199
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET ++VY+R A YG+I
Sbjct: 200 ETDRPSVVYRRHAFDYGLI 218
>gi|336396095|ref|ZP_08577494.1| 30S ribosomal interface protein S30EA [Lactobacillus farciminis
KCTC 3681]
Length = 182
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 100/194 (51%), Gaps = 24/194 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
++G+N+E+T +++ +VE+++ K S+ + V+++ G + EVT
Sbjct: 6 VRGENIEVTSSIREYVEKRLSKMEKYFSDGSNPIAHVNLKTYPSKG--------TKVEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ + +RAEE + +YA IDLV ++R+++K K + + R L P+
Sbjct: 58 I-PLPYITLRAEEVNDDLYAGIDLVVDKLERQVKKFKTRVNRKSREGGSLKDL----PLD 112
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
+ D EED + +IVR K + P+ EA+ Q+E + H+F+ F + ET
Sbjct: 113 DITPKDT-----EEDKS---QIVRTKRLSLKPMDAEEAVLQMEMLGHEFFIFEDSETNGA 164
Query: 280 NIVYKRKAGGYGVI 293
+IVYKR G YG+I
Sbjct: 165 SIVYKRNDGKYGLI 178
>gi|451943485|ref|YP_007464121.1| hypothetical protein A605_03740 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451902872|gb|AGF71759.1| hypothetical protein A605_03740 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 222
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 25/207 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR------C 156
I G+N+E+ D + V K+ K + +D L+ E P RR
Sbjct: 19 ITGRNVEVPDHFADRVNTKLAK--------IERLDPTLTFFHVELQHEPNPRRDSQSDRI 70
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES---DHGRHMKGFNRLK 213
++T K H + RAE ++ YA+++ + ++R LRK+K + S R +G +
Sbjct: 71 QITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKARRSISRSGHRAPQGTGEVA 129
Query: 214 VREPVTQVV-------ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDH 266
+ DAD ++ +D IVR K P++V +A+ ++E V H
Sbjct: 130 AELAAEARRAADETGRDRDADPYADTVEDVVPGRIVRTKEHPANPMSVDDALSEMELVGH 189
Query: 267 DFYGFRNEETGEINIVYKRKAGGYGVI 293
DFY F NEE G ++VY+R A YG+I
Sbjct: 190 DFYLFINEENGRPSVVYRRHAFDYGLI 216
>gi|407717729|ref|YP_006795134.1| ribosome-associated factor Y [Leuconostoc carnosum JB16]
gi|407241485|gb|AFT81135.1| ribosome-associated factor Y [Leuconostoc carnosum JB16]
Length = 180
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 111/191 (58%), Gaps = 19/191 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+ +TD+++ +VE+++ K + ++ + +++R + + EVT+
Sbjct: 6 VRGENIAVTDSLREYVEKRLTKL---NRYIEETANANINLRTYQSNNSGK---AEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ +Y +ID VS ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTNPDLYTAIDAVSEKLERQIRKYKTK----------INR-KSRETGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+++ ++ + + DD+ + +IVR K ++ P++ EA Q++ ++H+F+ F++ E+ +++
Sbjct: 108 DSNDEIPATDVDDDSL-QIVRRKQVDLKPMSPEEAALQMDLLEHNFFIFKDAESNTDSVI 166
Query: 283 YKRKAGGYGVI 293
YKR G YG++
Sbjct: 167 YKRADGKYGLL 177
>gi|323140699|ref|ZP_08075620.1| ribosomal subunit interface protein [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414823|gb|EFY05621.1| ribosomal subunit interface protein [Phascolarctobacterium
succinatutens YIT 12067]
Length = 195
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 25/195 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+++T +K +VE+K+ K V K V ++ L V KG I E+T+
Sbjct: 21 VKGRNIDVTPALKEYVEKKITK-VTKQFKTVGDISAVLKVE-----KGNHI--VEITV-- 70
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVREPVTQ 220
G++ RA+E + +Y+SIDLV I+R++ K K R MK ++
Sbjct: 71 PASGILLRAQETTKDMYSSIDLVVEKIERQIHKYKT------RLMKRKYSNFADTAVPAP 124
Query: 221 VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 280
+A E E I++ K F M P+T EAI Q+ ++HDF+ F + + G N
Sbjct: 125 APAAEAADDGEFE-------IIKNKRFIMHPMTPEEAILQMNLLNHDFFVFYDPDLGATN 177
Query: 281 IVYKRKAGGYGVIIP 295
+VY+RK G YG++ P
Sbjct: 178 VVYRRKDGKYGLLSP 192
>gi|260906855|ref|ZP_05915177.1| sigma 54 modulation protein/ribosomal protein S30EA [Brevibacterium
linens BL2]
Length = 219
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 21/212 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI-RRCE 157
+ +++ G+ L ++D+ + H+E+K+ K R V + V + + P R E
Sbjct: 1 MDIVVNGRQLTISDSFRAHIEDKIAKV---EQLAPRAQRVEVHVAHEKNSRQPETSERVE 57
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES--DHGRHMK-----GFN 210
+T+ K + RAE A YA++DL + + +LR+ +++ G H K
Sbjct: 58 LTVVAKGPAI-RAEAMASDKYAALDLAWAKLVERLRRARDRNKVPRAGHHRKESTAEALA 116
Query: 211 RLKVREPVT----QVVENDADVQSEEEDDNFVDE-----IVRMKFFEMPPLTVSEAIEQL 261
++ V + + + ++ +A +++ + E ++R K F P+ + EA+ ++
Sbjct: 117 KMPVADSLVPEEGEAIDANASANNDQTNGRIKAEGDSPVVLREKTFNGSPIGIEEALNRM 176
Query: 262 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
E V HDFY F +EE+ + ++VY+RK YGVI
Sbjct: 177 ELVGHDFYLFIDEESSKPSVVYRRKGWSYGVI 208
>gi|417003372|ref|ZP_11942435.1| ribosomal subunit interface protein [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325478564|gb|EGC81676.1| ribosomal subunit interface protein [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 178
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 32/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL + KN LTD ++N E+K + + K+ H +E+DVR + G +F E
Sbjct: 1 MKLNLIAKNFTLTDDIRNESEKKFDR-LDKYFHDQQEMDVRFAKEGNDFV-------VET 52
Query: 159 TLFTKKHGVVRAEEDAETVYASID-----LVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
T ++R+E T +ID LV I + K + +++++S G+ +K F+
Sbjct: 53 TAILDGGKILRSETTDPTYQTAIDKNIDGLVRQIRKNKTKLMRDRQS--GQSIK-FDNFD 109
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
E N IVR K + P++ EAI Q+E +DH+F+ + +
Sbjct: 110 PYEDDDDKDAN----------------IVRKKEIHVKPMSAEEAILQMELLDHNFFVYLD 153
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
+ ++ +VY+RK G YG IIP
Sbjct: 154 ADDMQVRVVYRRKKGDYGQIIP 175
>gi|283768961|ref|ZP_06341867.1| ribosomal subunit interface protein [Bulleidia extructa W1219]
gi|283104318|gb|EFC05695.1| ribosomal subunit interface protein [Bulleidia extructa W1219]
Length = 175
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 30/194 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVG---KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
I GKN+E+T+ +++ +EEK+ K +L + V V R+ P ++ E+T
Sbjct: 5 IVGKNVEITEAMRSQIEEKLTGLEKYLLVDGNTVARVVARVY---------PNSQKVEIT 55
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ TK G VRAE + YA++DL ++ ++R+ K + S RH + + + E V
Sbjct: 56 IPTKV-GTVRAEVIQDDFYAALDLAMDKLEDQIRRQKTRLS--KRHREHLAKAFIDETV- 111
Query: 220 QVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 279
E++N V VR K + +++ EAI Q+E + H FY + +EET +
Sbjct: 112 ------------HEEENEVP--VRTKIVQADKMSLDEAILQMELLGHSFYVYTDEETNKK 157
Query: 280 NIVYKRKAGGYGVI 293
IVY+R GGYG++
Sbjct: 158 AIVYQRDLGGYGLL 171
>gi|312977734|ref|ZP_07789481.1| ribosomal subunit interface protein [Lactobacillus crispatus
CTV-05]
gi|310895473|gb|EFQ44540.1| ribosomal subunit interface protein [Lactobacillus crispatus
CTV-05]
Length = 187
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 107/200 (53%), Gaps = 19/200 (9%)
Query: 94 GPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI 153
G +K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R
Sbjct: 3 GESYMLKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDHSA--- 58
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
+ EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG
Sbjct: 59 -KVEVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFF 115
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
V +P + + +IVR K + P+ EAI Q++ ++HDF+ F +
Sbjct: 116 VEQPEEEEKKPSEF------------DIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFED 163
Query: 274 EETGEINIVYKRKAGGYGVI 293
ET ++VY+R G YG+I
Sbjct: 164 AETNGTSVVYRRNDGRYGLI 183
>gi|312140671|ref|YP_004008007.1| sigma 54 modulation/s30ea ribosomal protein [Rhodococcus equi 103S]
gi|311890010|emb|CBH49328.1| sigma 54 modulation/S30EA ribosomal protein [Rhodococcus equi 103S]
Length = 221
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 104/199 (52%), Gaps = 5/199 (2%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
++ +++++G+N+E+ + + +V EK+ + + + + DV L + +R
Sbjct: 23 NNAEIVVKGRNVEVPEHFRVYVSEKLAR-LERFDPTIFHFDVELQHERNR-RQAKSCQRV 80
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
E+T K V RAE A++ YA+ + V++ ++ +LR+ K++ H + +
Sbjct: 81 EITA-RGKGPVARAEASADSFYAAFESVTAKLESRLRRTKDRRKVHYGEKTPVSVAQATA 139
Query: 217 PVTQ--VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ Q + D D+ + E +IVR K P+TV +A+ ++E V HDFY F ++
Sbjct: 140 ALAQDDSLAIDRDLSLDGEAPPGPGQIVRTKVHSASPMTVDDALYEMELVGHDFYLFHDK 199
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET ++VY+R A YG+I
Sbjct: 200 ETDRPSVVYRRHAFDYGLI 218
>gi|296394607|ref|YP_003659491.1| ribosomal subunit interface protein [Segniliparus rotundus DSM
44985]
gi|296181754|gb|ADG98660.1| ribosomal subunit interface protein [Segniliparus rotundus DSM
44985]
Length = 249
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 36/222 (16%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IRRC 156
+++ G+ + + + + HV EK+ + +H R V+V L+ PR +R
Sbjct: 30 IVVTGRRVVVPEHFREHVAEKMARLEKFDAHCHR-VEVELA-----HESNPRQSKQCQRV 83
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRH---------- 205
+VT+ K VVRAE AET YA++DL + I +LR+ K++ + HG+H
Sbjct: 84 QVTVLGKG-PVVRAEARAETFYAALDLAADKIIERLRRSKDRRQVHHGQHRPTSVAEATA 142
Query: 206 -----------MKGFNRLKVREPVTQVVENDADVQSEEEDDNFVD---EIVRMKFFEMPP 251
G P + + + + D +IVR+K P
Sbjct: 143 NGWEPEMAPAAANGGPGSAQASPALGASSGFSPARGDAQADKAPSGPGQIVRVKSHPTSP 202
Query: 252 LTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ V +A+ ++E V HDFY F ++ETG ++VY+R+ YG+I
Sbjct: 203 MGVEDALNRMELVGHDFYLFHDKETGLPSVVYRRRGYDYGLI 244
>gi|295426390|ref|ZP_06819040.1| ribosomal subunit interface protein [Lactobacillus amylolyticus DSM
11664]
gi|295063758|gb|EFG54716.1| ribosomal subunit interface protein [Lactobacillus amylolyticus DSM
11664]
Length = 206
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 23/207 (11%)
Query: 89 RMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGE 146
R++ G +K ++G+N+E+TD ++++VE+++ K + K+ L ++V V L V
Sbjct: 17 RITVKGESYMLKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELSQDVIAHVNLKVYRDH 75
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
K EVT+ + V+RAEE + +Y SID VS ++R+++K K + + R
Sbjct: 76 SAK------VEVTILLP-YLVLRAEETTDDMYRSIDFVSEKLERQIKKYKTRVNRKSRE- 127
Query: 207 KGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDH 266
KG + V P + + +IVR K + P+ EAI Q++ + H
Sbjct: 128 KGLHDFFVEAPEEEEKKPAKF------------DIVRNKRVSLKPMDPEEAILQMDMLGH 175
Query: 267 DFYGFRNEETGEINIVYKRKAGGYGVI 293
DF+ F++ ET ++VY+R G YG+I
Sbjct: 176 DFFVFQDAETNGTSVVYRRNDGRYGLI 202
>gi|359778349|ref|ZP_09281618.1| hypothetical protein ARGLB_085_01300 [Arthrobacter globiformis NBRC
12137]
gi|359304266|dbj|GAB15447.1| hypothetical protein ARGLB_085_01300 [Arthrobacter globiformis NBRC
12137]
Length = 241
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 23/215 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ +I G+NL ++D + + EK+ K + V+ VD ++S G ++ EV
Sbjct: 1 MEFMISGRNLTVSDRFREYAGEKISK-IESLGDKVQRVDAKVSKETNARQTGDQLT-VEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHMKGFNR--LKVR 215
T+ + V+RAE A +A+ DL + + +LR+ K+ K+ HGRH R
Sbjct: 59 TVLGRG-PVIRAEASAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKAVREATATL 117
Query: 216 EPVTQ----VVENDADVQSEEED--------DNFVDE-----IVRMKFFEMPPLTVSEAI 258
EP + VE ++Q+ E +N + ++R K F LT+ +A+
Sbjct: 118 EPASSNQPIYVEASNNIQAAPEPAEKSPYDVENDIPAGDSPVLIRRKVFPAASLTLDDAV 177
Query: 259 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ +E + HDFY F ++ T ++VY+R+ YGVI
Sbjct: 178 DNMELIGHDFYLFVDKATNAPSVVYRRRGWTYGVI 212
>gi|81428107|ref|YP_395106.1| 30S ribosomal interface protein S30EA [Lactobacillus sakei subsp.
sakei 23K]
gi|78609748|emb|CAI54794.1| 30S ribosomal interface protein S30EA [Lactobacillus sakei subsp.
sakei 23K]
Length = 181
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 33/198 (16%)
Query: 103 IQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++++VE+K+ K + +H V L V + K
Sbjct: 6 VRGENIEVTEAIRSYVEKKISKLEKYFDESATATAH------VNLKVYPDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAEE + +Y S+DLV+ ++R++RK K K NR K R
Sbjct: 54 VEVTI-PLPYLVLRAEETSPDMYGSVDLVTDKLERQIRKYKTK----------INR-KSR 101
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
E + VE V SEE ++VR K + P+ EAI Q+ + H+F+ F + E
Sbjct: 102 ERGIKGVE--LVVSSEETLPEEPMQVVRTKRVSLKPMDSEEAILQMNMLGHEFFIFEDSE 159
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKR+ G YG+I
Sbjct: 160 TNGTSIVYKRQDGRYGLI 177
>gi|444305049|ref|ZP_21140836.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Arthrobacter sp. SJCon]
gi|443482584|gb|ELT45492.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Arthrobacter sp. SJCon]
Length = 247
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 23/212 (10%)
Query: 102 IIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
+I G+NL ++D + + EK+ K + V+ VD ++S G ++ EVT+
Sbjct: 1 MISGRNLTVSDRFREYAGEKISK-IESLGDKVQRVDAKVSKETNARQTGDQLT-VEVTVL 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHMKGFNR--------L 212
+ V+RAE A +A+ DL + + +LR+ K+ K+ HGRH R
Sbjct: 59 GRG-PVIRAEASAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKAVREATATLEPA 117
Query: 213 KVREP--VTQVVENDADVQSEEEDDNFVDE---------IVRMKFFEMPPLTVSEAIEQL 261
EP V NDA ++ VD ++R K F L++ +A++ +
Sbjct: 118 SAHEPLYVEASHRNDAAAAPADKSPYDVDNDIPAGDSPVLIRRKVFPAASLSLDDAVDNM 177
Query: 262 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
E V HDFY F ++ T ++VY+R+ YGVI
Sbjct: 178 ELVGHDFYLFVDKATNTPSVVYRRRGWTYGVI 209
>gi|317153188|ref|YP_004121236.1| ribosomal subunit interface protein [Desulfovibrio aespoeensis
Aspo-2]
gi|316943439|gb|ADU62490.1| ribosomal subunit interface protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 179
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 103/197 (52%), Gaps = 29/197 (14%)
Query: 106 KNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
KN E +D +K + + EKVGK V E D+++++ +F R + +
Sbjct: 8 KNFEPSDHLKGYAQKRFEKVGKYVSD-----AEADLQVNLLVDKF-------RHKADIIL 55
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
G+ + A ED+E +Y++ID+V ++ ++R+++EK D + +G N++++
Sbjct: 56 NADGIHISAYEDSEDMYSTIDMVLDKLEAQMRRMREKIKDRTKQARG-NKVQMNFLSYGS 114
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
+ ++ IV +E P++V EA QLE +D++F F N ET +N+
Sbjct: 115 IPGESGPT-----------IVGTDTYEPKPMSVDEAALQLETLDNEFLVFLNAETEGVNV 163
Query: 282 VYKRKAGGYGVIIPKGN 298
+YKRK G +G+I P GN
Sbjct: 164 IYKRKNGDFGLIDP-GN 179
>gi|55820463|ref|YP_138905.1| ribosomal protein S30AE family protein [Streptococcus thermophilus
LMG 18311]
gi|55822347|ref|YP_140788.1| ribosomal protein S30AE family protein [Streptococcus thermophilus
CNRZ1066]
gi|55736448|gb|AAV60090.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus thermophilus LMG 18311]
gi|55738332|gb|AAV61973.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus thermophilus CNRZ1066]
Length = 182
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 108/198 (54%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K V K+ H +E+ R++++ + + EV
Sbjct: 2 IKCSIRGENIEVTEALRDYVESKLSK-VEKYFHEDQELHARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T +RAE+ + +Y SIDLV I R++RK K K + K RE V
Sbjct: 57 TIPTGS-VTLRAEDVSLDMYGSIDLVVDKIARQIRKNKTKIAR-----------KYREKV 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ EE ++ E+VR K E+ P+ V EAI Q+E + HDF+ + + E
Sbjct: 105 PTGEMFSTEFNKEEVEEAPAVEVVRTKNIELKPMDVEEAILQMELLGHDFFIYTDSEDHT 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++YKR+ G YG+I K
Sbjct: 165 TNVLYKREDGNYGLIEAK 182
>gi|119962856|ref|YP_948408.1| ribosomal subunit interface protein [Arthrobacter aurescens TC1]
gi|119949715|gb|ABM08626.1| putative ribosomal subunit interface protein [Arthrobacter
aurescens TC1]
Length = 253
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+++ +I G+NL ++D + + EK+ K + V+ VD ++S PR E
Sbjct: 11 TMEFMISGRNLTVSDRFREYAGEKISK-IESLGDKVQRVDAKVSKE-----TNPRQTPGE 64
Query: 158 VTLFTKKHG---VVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHMKGFNR-- 211
+T+ G V+RAE A +A+ DL + + +LR+ K+ K+ HGRH R
Sbjct: 65 LTVEVTVLGRGPVIRAEATAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKAVREA 124
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDE-----------------IVRMKFFEMPPLTV 254
EP + + + +E VDE ++R K F LT+
Sbjct: 125 TATLEPASASEPLYVEASNHQESAPPVDERSPYDIENDIPAGDSPVLIRRKVFPAASLTL 184
Query: 255 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+A++ +E V H+FY F ++ET ++VY+R YGVI
Sbjct: 185 DDAVDNMELVGHNFYLFLDKETNAPSVVYRRSGWTYGVI 223
>gi|325849496|ref|ZP_08170777.1| ribosomal subunit interface protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480116|gb|EGC83191.1| ribosomal subunit interface protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 176
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 22/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I+GKN+ + +++K +EK + + K+ + E+D++ S G ++ E
Sbjct: 1 MKLNIKGKNINVYESLKEEAKEKFDR-LDKYFNKEEEMDLKFSTEGN-------FKKVES 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F K ++RAEE E ID V + R++RK K K + R +
Sbjct: 53 TIFLKGGTILRAEEVNEDFSTGIDKVIDALVRQIRKQKTKLQRNRRSGESIK-------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
E+ + E+E+D I R K + P++ EA Q+E ++HDF+ + +++ +
Sbjct: 105 ---FESFDKIDEEKEEDPI---IKREKEILLRPMSDEEACMQMELLNHDFFLYLDDQDMK 158
Query: 279 INIVYKRKAGGYGVIIP 295
+VYKRK G YG+IIP
Sbjct: 159 TRLVYKRKDGHYGLIIP 175
>gi|157149987|ref|YP_001449926.1| ribosomal subunit interface protein [Streptococcus gordonii str.
Challis substr. CH1]
gi|157074781|gb|ABV09464.1| ribosomal subunit interface protein [Streptococcus gordonii str.
Challis substr. CH1]
Length = 180
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 110/195 (56%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K ++ NR KV
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVVDKIERQIRKNKTK-------IERKNRTKVS--- 105
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T + DA V EE D ++VR K ++ P+ + EA+ Q+E + HDF+ + + +
Sbjct: 106 TSQIFTDAVV---EEVDEAPAKVVRSKHIDLKPMDLEEALLQMELLGHDFFIYTDVDDNT 162
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 163 TNVIYRREDGDLGLL 177
>gi|116617378|ref|YP_817749.1| 30S ribosomal protein S30 [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|339497415|ref|ZP_08658391.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Leuconostoc pseudomesenteroides KCTC 3652]
gi|381335851|ref|YP_005173626.1| 30S ribosomal protein S30P / sigma 54 modulation protein
[Leuconostoc mesenteroides subsp. mesenteroides J18]
gi|116096225|gb|ABJ61376.1| SSU ribosomal protein S30P [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|356643817|gb|AET29660.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Leuconostoc mesenteroides subsp. mesenteroides J18]
Length = 181
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 108/191 (56%), Gaps = 19/191 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+ +TD ++ +VE+++ K + ++ +++R K + EVT+
Sbjct: 6 VRGENITVTDAIREYVEKRLTKL---NRYIEENAKANVNLRTY---KSDNSGKVEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ + +YA++D VS ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTNQDLYAAVDNVSEKVERQIRKYKTK----------INR-KSRETGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
++ ++ EE DD+ + +IVR K ++ P++ EA Q++ + H F+ F++ E+ +++
Sbjct: 108 DSKGEIPEEEVDDSAL-QIVRTKQVDLKPMSPEEAALQMDLLGHVFFIFKDAESNTDSVI 166
Query: 283 YKRKAGGYGVI 293
YKR G YG++
Sbjct: 167 YKRADGKYGLL 177
>gi|385814224|ref|YP_005850617.1| Ribosome-associated factor Y [Lactobacillus helveticus H10]
gi|323466943|gb|ADX70630.1| Ribosome-associated factor Y [Lactobacillus helveticus H10]
Length = 187
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 107/200 (53%), Gaps = 19/200 (9%)
Query: 94 GPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI 153
G +K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R
Sbjct: 3 GESYMLKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDHSA--- 58
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
+ EVT+ + V+RAEE + +Y SID V ++R++RK K + + R KG
Sbjct: 59 -KVEVTI-PLPYLVLRAEETTDDMYRSIDFVFEKLERQIRKYKTRVNRKSRE-KGLQDFF 115
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
V +P + + +IVR K + P+ EAI Q++ ++HDF+ F +
Sbjct: 116 VEQPEEEEKKPSEF------------DIVRNKRVSLKPMDPEEAILQMDMMEHDFFVFED 163
Query: 274 EETGEINIVYKRKAGGYGVI 293
ET I++VY+R G YG+I
Sbjct: 164 AETNGISVVYRRNDGRYGLI 183
>gi|332522213|ref|ZP_08398465.1| ribosomal subunit interface protein [Streptococcus porcinus str.
Jelinkova 176]
gi|332313477|gb|EGJ26462.1| ribosomal subunit interface protein [Streptococcus porcinus str.
Jelinkova 176]
Length = 182
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 111/198 (56%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++++VE K+ K + K+ E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTDAIRDYVESKLAK-IEKYFVEENEIDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TILLGSM-TLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KIPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
QV ++ + + EE + V ++VR K + P+ + EA Q+E + HDF+ + + E GE
Sbjct: 107 GQVFTSEFESEEVEE--SPVVKVVRTKNVTLKPMDIEEARLQMELLGHDFFIYTDSEDGE 164
Query: 279 INIVYKRKAGGYGVIIPK 296
NI+Y+R+ G G+I K
Sbjct: 165 TNILYRREDGDLGLIEAK 182
>gi|21221452|ref|NP_627231.1| hypothetical protein SCO3009 [Streptomyces coelicolor A3(2)]
gi|289771262|ref|ZP_06530640.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Streptomyces lividans TK24]
gi|7799204|emb|CAB90920.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|289701461|gb|EFD68890.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Streptomyces lividans TK24]
Length = 254
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 25/226 (11%)
Query: 87 PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGG 145
P + S G V ++++G+ E+ + + HV EK+ + + K V +DV +S +
Sbjct: 13 PSKRSDPGTEFCVDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVS-KEP 71
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
+ R R E+TL ++ V+RAE A YA++DL + + +LRK +K
Sbjct: 72 NPRQADRCDRVEITLRSRGP-VIRAEAAASDPYAALDLAAEKLGARLRKQHDKRFSR--- 127
Query: 206 MKGFNRLKVRE-----PVTQVVENDADVQSEEEDDNFVDE-------------IVRMKFF 247
+G R+ E P + + DV E+ D + +VR K
Sbjct: 128 -RGARRISAAEVADHVPGAATLNGNGDVVPTEKQDGVPTKKIGSLEVQGDGPLVVREKTH 186
Query: 248 EMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
P+++ +A+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 187 VAAPMSLDQALYEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 232
>gi|227877189|ref|ZP_03995263.1| ribosome-associated inhibitor protein Y [Lactobacillus crispatus
JV-V01]
gi|256842743|ref|ZP_05548231.1| ribosome-associated protein [Lactobacillus crispatus 125-2-CHN]
gi|256848947|ref|ZP_05554381.1| ribosome-associated protein Y [Lactobacillus crispatus MV-1A-US]
gi|262045710|ref|ZP_06018674.1| ribosome-associated protein Y [Lactobacillus crispatus MV-3A-US]
gi|293380188|ref|ZP_06626270.1| ribosomal subunit interface protein [Lactobacillus crispatus 214-1]
gi|423317950|ref|ZP_17295847.1| ribosomal subunit interface protein [Lactobacillus crispatus
FB049-03]
gi|423321290|ref|ZP_17299162.1| ribosomal subunit interface protein [Lactobacillus crispatus
FB077-07]
gi|227863243|gb|EEJ70688.1| ribosome-associated inhibitor protein Y [Lactobacillus crispatus
JV-V01]
gi|256614163|gb|EEU19364.1| ribosome-associated protein [Lactobacillus crispatus 125-2-CHN]
gi|256714486|gb|EEU29473.1| ribosome-associated protein Y [Lactobacillus crispatus MV-1A-US]
gi|260573669|gb|EEX30225.1| ribosome-associated protein Y [Lactobacillus crispatus MV-3A-US]
gi|290923232|gb|EFE00153.1| ribosomal subunit interface protein [Lactobacillus crispatus 214-1]
gi|405596286|gb|EKB69631.1| ribosomal subunit interface protein [Lactobacillus crispatus
FB077-07]
gi|405597329|gb|EKB70602.1| ribosomal subunit interface protein [Lactobacillus crispatus
FB049-03]
Length = 181
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 106/195 (54%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V +P
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVEQPE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ + +IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 115 EEEKKPSEF------------DIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETNG 162
Query: 279 INIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 163 TSVVYRRNDGRYGLI 177
>gi|290959921|ref|YP_003491103.1| hypothetical protein SCAB_55331 [Streptomyces scabiei 87.22]
gi|260649447|emb|CBG72562.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 241
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 105/214 (49%), Gaps = 25/214 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
V ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 12 VDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVS-KEPNPRQADRSDRVE 70
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + ++ +LRK +K +G RL E
Sbjct: 71 ITLHSRG-PVIRAEAAASDPYAALDLAADKLEARLRKQHDKRYTR----RGARRLTAAEV 125
Query: 217 ----PVTQVVENDADVQSEEEDDNFVDE-------------IVRMKFFEMPPLTVSEAIE 259
P + + V EE+ + + IVR K P+T+ +A+
Sbjct: 126 ADHVPGVATLNGNGYVADEEKAEGVPTKKIGSLEVKGEGPLIVREKTHVASPMTLDQALY 185
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 186 EMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 219
>gi|163840383|ref|YP_001624788.1| ribosome-associated factor Y [Renibacterium salmoninarum ATCC
33209]
gi|162953859|gb|ABY23374.1| ribosome-associated factor Y [Renibacterium salmoninarum ATCC
33209]
Length = 267
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 113/222 (50%), Gaps = 35/222 (15%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKH-SHLVREVDVRLSVRGGEFGKGPRIR-- 154
+++ +I G+NL ++D + + EK+ K L+H + V+ VD ++S K P R
Sbjct: 25 TMEFMISGRNLTVSDRFREYATEKISK--LEHLTEKVQRVDAKVS-------KQPNARLA 75
Query: 155 --RCEVTLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHM-KGF 209
+ V L + G V+RAE A +A+ D+ + + +LR+ K+K+ HGRH K
Sbjct: 76 DTKLTVELTVQGRGPVIRAEAHAGDKFAAFDVAYNKLLERLRRAKDKKKLHHGRHTPKAV 135
Query: 210 NRLKVR-EPV---------TQV-VENDADVQS----EEEDDNFVDE---IVRMKFFEMPP 251
+ EPV T+V VE +A Q+ E E+D + ++R K F
Sbjct: 136 SEATASLEPVGTGPITLLNTEVSVEAEAAKQTASPYEIENDIPAGDSPVLIRRKVFPAAA 195
Query: 252 LTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ V +A++ +E V HDFY F + T ++VY+R+ YGVI
Sbjct: 196 MGVDDAVDNMELVGHDFYLFIDSVTNAPSVVYRRRGWTYGVI 237
>gi|319647931|ref|ZP_08002149.1| YvyD protein [Bacillus sp. BT1B_CT2]
gi|404490946|ref|YP_006715052.1| hypothetical protein BLi03774 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52349956|gb|AAU42590.1| YvyD [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317390272|gb|EFV71081.1| YvyD protein [Bacillus sp. BT1B_CT2]
Length = 186
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 13/193 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ HVE+K+GK + VD + V + + EVT+
Sbjct: 5 VRGENIEVTPALREHVEKKIGKL---ERYFENNVDAIVHVNLKFYNDQES--KVEVTIPM 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ RAE E +Y +IDL ++ ++R++RK K K + R KG ++ E
Sbjct: 60 TDLSL-RAEVHHEDMYNAIDLATNKLERQIRKHKTKVNRKFRE-KGSSKHVFAEGNGIGT 117
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
D++ E+ ++VR K F + P+ EAI Q+ + H F+ F N ET N+V
Sbjct: 118 AVQEDIEDEQ------PQVVRQKRFNLKPMDNEEAILQMNMLGHSFFVFTNAETNLTNVV 171
Query: 283 YKRKAGGYGVIIP 295
Y+R G YG+I P
Sbjct: 172 YRRNDGKYGLIEP 184
>gi|154496231|ref|ZP_02034927.1| hypothetical protein BACCAP_00516 [Bacteroides capillosus ATCC
29799]
gi|150274314|gb|EDN01391.1| ribosomal subunit interface protein [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 181
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 96/198 (48%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K + K + L V + E+KVGK + ++ E + SV R V
Sbjct: 1 MKFVFTDKKVNLPRKVHAYAEKKVGK-LDRYFKADAEAAIVFSVEKD---------RNNV 50
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
L + G ++R E ++A+ID + ++R+LRK K + R F R E
Sbjct: 51 ELTIRSAGTIIRVAESTSDMFATIDAAVASVERQLRKNKARLEKRLRQ-DAFVRSVDEEE 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET- 276
++ V + +EEE+ IVR K F + P++V EAI Q+ VDH F+ FR+ +
Sbjct: 110 ISSFVPD-----TEEEEFR----IVRTKKFPIRPMSVEEAILQMNLVDHTFFAFRDADAD 160
Query: 277 GEINIVYKRKAGGYGVII 294
G +VYKR GGYG+I+
Sbjct: 161 GSFAVVYKRNDGGYGLIV 178
>gi|52082065|ref|YP_080856.1| hypothetical protein BL03380 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52005276|gb|AAU25218.1| YvyD [Bacillus licheniformis DSM 13 = ATCC 14580]
Length = 187
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 13/193 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ HVE+K+GK + VD + V + + EVT+
Sbjct: 6 VRGENIEVTPALREHVEKKIGKL---ERYFENNVDAIVHVNLKFYNDQES--KVEVTIPM 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ RAE E +Y +IDL ++ ++R++RK K K + R KG ++ E
Sbjct: 61 TDLSL-RAEVHHEDMYNAIDLATNKLERQIRKHKTKVNRKFRE-KGSSKHVFAEGNGIGT 118
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
D++ E+ ++VR K F + P+ EAI Q+ + H F+ F N ET N+V
Sbjct: 119 AVQEDIEDEQ------PQVVRQKRFNLKPMDNEEAILQMNMLGHSFFVFTNAETNLTNVV 172
Query: 283 YKRKAGGYGVIIP 295
Y+R G YG+I P
Sbjct: 173 YRRNDGKYGLIEP 185
>gi|418131375|ref|ZP_12768255.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA07643]
gi|353800790|gb|EHD81099.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA07643]
Length = 190
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 114/197 (57%), Gaps = 15/197 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVREP 217
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K E + ++ N+ KV
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIERKNKTKIERKNKNKV--- 112
Query: 218 VTQVVENDADVQSEEEDDNFVD-EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
T + DA V ED N V ++VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 113 ATGQLFTDALV----EDSNIVQSKVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVED 168
Query: 277 GEINIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 169 QTTNVIYRREDGEIGLL 185
>gi|333896499|ref|YP_004470373.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermoanaerobacterium xylanolyticum LX-11]
gi|333111764|gb|AEF16701.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 179
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 14/130 (10%)
Query: 167 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ-VVEND 225
+ RAEE ++ +YASID V +++++ K K K ++ F +R V Q ++ND
Sbjct: 61 IFRAEEVSDDMYASIDNVVDKLEKQILKYKTKLKNN------FTPESIRFDVQQDYIKND 114
Query: 226 ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKR 285
+Q E E E+V+ K F + P++V EAI Q+ + H+F+ F N ET + +VYKR
Sbjct: 115 --IQDELEF-----EVVKTKRFAVKPMSVQEAILQMNLLGHNFFVFTNSETDDFTVVYKR 167
Query: 286 KAGGYGVIIP 295
K G YG+I P
Sbjct: 168 KDGKYGLIEP 177
>gi|116629960|ref|YP_815132.1| ribosome-associated protein Y [Lactobacillus gasseri ATCC 33323]
gi|300361279|ref|ZP_07057456.1| ribosomal subunit interface protein [Lactobacillus gasseri JV-V03]
gi|420147829|ref|ZP_14655103.1| Ribosomal subunit interface protein [Lactobacillus gasseri CECT
5714]
gi|116095542|gb|ABJ60694.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Lactobacillus gasseri ATCC 33323]
gi|300353898|gb|EFJ69769.1| ribosomal subunit interface protein [Lactobacillus gasseri JV-V03]
gi|398400497|gb|EJN54044.1| Ribosomal subunit interface protein [Lactobacillus gasseri CECT
5714]
Length = 196
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 109/205 (53%), Gaps = 23/205 (11%)
Query: 91 SWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFG 148
+ +G + +K ++G+N+E+TD ++++V++++ K + K+ + +V + L V
Sbjct: 9 TLEGESTMLKYNVRGENIEVTDALRDYVQKRLDK-LEKYFEINSDVIAHINLKVYPDHTA 67
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
K EVT+ + V+RAE+ + +Y SID VS ++R++RK K + + R KG
Sbjct: 68 K------VEVTI-PLPYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTRINRKSRE-KG 119
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
D++ E++ D IVR K ++ P+ EA+ Q++ + HDF
Sbjct: 120 LKDFFY-----------EDLEEEKKTPKEFD-IVRNKHLDLKPMNAEEAVLQMDLLGHDF 167
Query: 269 YGFRNEETGEINIVYKRKAGGYGVI 293
+ F + +T +IVY+R G YG+I
Sbjct: 168 FVFEDADTNGTSIVYRRNDGRYGLI 192
>gi|404493575|ref|YP_006717681.1| ribosomal subunit interface-associated sigma-54 modulation protein
RaiA [Pelobacter carbinolicus DSM 2380]
gi|77545616|gb|ABA89178.1| ribosomal subunit interface-associated sigma-54 modulation protein
RaiA [Pelobacter carbinolicus DSM 2380]
Length = 182
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 111/206 (53%), Gaps = 34/206 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC-E 157
+++ + +++E+++ ++ +VEEK+ + V K+ + LSV +IR C E
Sbjct: 1 MQIAVTFRHMEVSEALRAYVEEKISR-VKKYIEEPIDAQAVLSVEK-------KIRHCAE 52
Query: 158 VTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
VTL K G+ ++ ++ +YA+ID + I+R+L++ KEK H +
Sbjct: 53 VTLVAK--GITIKGSDETNDMYAAIDGMVDKIERQLKRYKEKIKRH-------------K 97
Query: 217 PVTQVVENDADVQSEEEDDNFVDE------IVRMKFFEMPPLTVSEAIEQLENVDHDFYG 270
PV++ V V+ + +DE ++R + F + PL+V EA+ Q++ ++ F
Sbjct: 98 PVSERVRQ---VEKTVFAADSIDEGSPEPVVIRSQSFSVKPLSVEEAVMQMDLLNKTFLV 154
Query: 271 FRNEETGEINIVYKRKAGGYGVIIPK 296
F + T EI++VY+RK G YG+I+P+
Sbjct: 155 FSDASTNEISVVYRRKDGNYGLIVPE 180
>gi|395244796|ref|ZP_10421750.1| Ribosomal subunit interface protein [Lactobacillus hominis CRBIP
24.179]
gi|394483002|emb|CCI82758.1| Ribosomal subunit interface protein [Lactobacillus hominis CRBIP
24.179]
Length = 181
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 106/198 (53%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K ++G+N+E+TD+++++V+ EK+ K S ++ V++R+ +
Sbjct: 2 LKYNVRGENIEVTDSLRDYVQKRLEKLEKYFEIESDVIAHVNMRVYPDHSA--------K 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAE+ + +Y SID VS ++R++RK K + + R KG
Sbjct: 54 VEVTI-PLPYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTRINRKSRE-KGLKDF--- 108
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
EN V+ E+E + IVR K ++ P+ EA+ Q++ + HDF+ F + +
Sbjct: 109 -----FYEN---VEEEKETPKKFN-IVRNKHLDLKPMNAEEAVLQMDLLGHDFFIFEDAD 159
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVY+R G YG+I
Sbjct: 160 TNGTSIVYRRNDGRYGLI 177
>gi|399523646|ref|ZP_10764260.1| ribosomal subunit interface protein [Atopobium sp. ICM58]
gi|398375340|gb|EJN52757.1| ribosomal subunit interface protein [Atopobium sp. ICM58]
Length = 215
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 34/219 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K + R VDV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFRAYVEEKVSKITQFYPRAQR-VDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
R E+T++ K ++RAE + YA++D+ + + +LR+++++ DH R + R V
Sbjct: 55 RIELTVYGKG-PIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDHRRR---YPRDLV 110
Query: 215 REPVTQV-----------------VENDADVQ-SEEEDDNFVDE--IVRMKFFEMPPLTV 254
+ +V + + D++ E ++ + D IVR K E PP++V
Sbjct: 111 EAEILEVTPVVEEVAEPEPEAPKPLSSAGDLKVGEAREEQWGDTPIIVRQKVHEAPPMSV 170
Query: 255 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
EA++Q+ V H F+ F ++ET + +VY R YGV+
Sbjct: 171 DEALDQMMMVGHPFFLFVDKETNQPCVVYHRHGWTYGVL 209
>gi|408409661|ref|ZP_11180945.1| YvyD [Lactobacillus sp. 66c]
gi|409350600|ref|ZP_11233658.1| YvyD [Lactobacillus equicursoris CIP 110162]
gi|407876171|emb|CCK82751.1| YvyD [Lactobacillus sp. 66c]
gi|407877311|emb|CCK85716.1| YvyD [Lactobacillus equicursoris CIP 110162]
Length = 183
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L ++V V L V K
Sbjct: 2 LKYNVRGENIEVTEALRDYVEKRLTK-LEKYFELNQDVIAHVNLKVYRDHSAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG + V E
Sbjct: 55 EVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLDEFFVPE 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ E A + IVR K + P+ EAI Q++ ++HDF+ F++ ET
Sbjct: 113 EAPEAKEEKAPMFK----------IVRNKRVNLKPMDPEEAILQMDMLEHDFFVFQDAET 162
Query: 277 GEINIVYKRKAGGYGVI 293
++VY+R G YG+I
Sbjct: 163 NGTSVVYRRNDGSYGLI 179
>gi|315641248|ref|ZP_07896325.1| ribosomal subunit interface protein [Enterococcus italicus DSM
15952]
gi|315483015|gb|EFU73534.1| ribosomal subunit interface protein [Enterococcus italicus DSM
15952]
Length = 186
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 102/201 (50%), Gaps = 21/201 (10%)
Query: 94 GPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPR 152
G + K ++G+N+E+T+ ++ +V +KVGK S V L V + K
Sbjct: 3 GAIVMFKYNVRGENIEVTEAIREYVIKKVGKLERYFSDAPDATAHVNLKVYSDKTAK--- 59
Query: 153 IRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
EVT+ + V+RAEE + +YAS+DLV ++R++RK K K + R
Sbjct: 60 ---VEVTI-PLPYLVLRAEETSPDLYASVDLVVDKLERQIRKFKTKINRKSR-------- 107
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 272
V P T V+ ++ + E EIVR K + P+ EA+ Q+ + H+F+ F
Sbjct: 108 AVVIPETPVIPSNEKEEEVSEL-----EIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFE 162
Query: 273 NEETGEINIVYKRKAGGYGVI 293
+ ++ +IVY+RK G YG+I
Sbjct: 163 DADSNGTSIVYRRKDGKYGLI 183
>gi|294812929|ref|ZP_06771572.1| Putative sigma 54 modulation protein/ribosomal protein S30EA
[Streptomyces clavuligerus ATCC 27064]
gi|294325528|gb|EFG07171.1| Putative sigma 54 modulation protein/ribosomal protein S30EA
[Streptomyces clavuligerus ATCC 27064]
Length = 256
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 26/216 (12%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
V ++++G+ E+ + + HV EK+ + K V +DV +S + + R R
Sbjct: 26 CVDIVVKGRKTEVPERFRKHVAEKLKLDKIQKLDAKVISLDVEVS-KEHNPRQADRSDRV 84
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL---K 213
E+TL ++ V+RAE A YA++DL + ++ +LRK +K + +G RL +
Sbjct: 85 EITLHSRG-PVIRAEAAAGDPYAALDLATGKLEARLRKQHDKRNTR----RGNGRLSAAE 139
Query: 214 VREPVTQVVENDADVQS--EEEDDNFVDE--------------IVRMKFFEMPPLTVSEA 257
V + V V E +A+ Q EE+ + +VR K P+T+ +A
Sbjct: 140 VADVVPGVAELNANGQPVVEEQQPPAIPTTRIGSLEVQGEGPLVVREKIHTAAPMTLDQA 199
Query: 258 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ ++E V HDFY F + ET + ++VY+R A YGVI
Sbjct: 200 LYEMELVGHDFYLFVDSETKQPSVVYRRHAYDYGVI 235
>gi|227431275|ref|ZP_03913329.1| ribosome-associated inhibitor protein Y [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227353037|gb|EEJ43209.1| ribosome-associated inhibitor protein Y [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 181
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 108/191 (56%), Gaps = 19/191 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+ +TD ++ +VE+++ K + ++ +++R K + EVT+
Sbjct: 6 VRGENITVTDVIREYVEKRLTKL---NRYIEENAKANVNLRTY---KSDNSGKVEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ + +YA++D VS ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTNQDLYAAVDNVSEKVERQIRKYKTK----------INR-KSRETGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
++ ++ EE DD+ + +IVR K ++ P++ EA Q++ + H F+ F++ E+ +++
Sbjct: 108 DSKGEIPEEEVDDSAL-QIVRTKQVDLKPMSPEEAALQMDLLGHVFFIFKDAESNTDSVI 166
Query: 283 YKRKAGGYGVI 293
YKR G YG++
Sbjct: 167 YKRADGKYGLL 177
>gi|304391088|ref|ZP_07373040.1| ribosome-associated inhibitor protein Y [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315656136|ref|ZP_07909027.1| ribosome-associated inhibitor protein Y [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|304325971|gb|EFL93217.1| ribosome-associated inhibitor protein Y [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315493138|gb|EFU82738.1| ribosome-associated inhibitor protein Y [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 219
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 20/206 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+++ ++ +N E+ + ++EEK+ K V + + + VDV L+ K PR
Sbjct: 13 MEITVKARNAEIHPNFREYIEEKIAK-VEQLAPRTQRVDVELT-----HEKNPRQADTAE 66
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNRLK 213
R E+T+ K VVRAE + YA++D+ + + +LR+ +++ DH ++ + L
Sbjct: 67 RIELTVLGKG-PVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDHRKYEIPPDVELD 125
Query: 214 VR------EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHD 267
V+ P + + + E+ D+ V IVR K E ++V EA++++E V H
Sbjct: 126 VQIPEASEAPAAKPPLKLGESREEQLGDSPV--IVREKLHESRAMSVEEALDEMELVGHP 183
Query: 268 FYGFRNEETGEINIVYKRKAGGYGVI 293
FY F + ET + +VY RK YGVI
Sbjct: 184 FYLFIDSETAQPAVVYHRKGWTYGVI 209
>gi|384567274|ref|ZP_10014378.1| ribosomal subunit interface protein [Saccharomonospora glauca K62]
gi|384523128|gb|EIF00324.1| ribosomal subunit interface protein [Saccharomonospora glauca K62]
Length = 224
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 32/224 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ ++++G N+E+ + + HV K+ + + ++ V DV L + +R E+
Sbjct: 1 MDIVVKGLNVEVPEHYREHVANKMAR-LERYDRKVIRYDVELFHEPNRR-QAKNCQRVEI 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRHM-KGFNRLKVRE 216
T K +VRAE A YA++D + ++ +LR++ ++ DH GR +
Sbjct: 59 T-GKGKGPIVRAEARAGDFYAALDSAINKLESRLRRLHDRRCDHYGRRAPRSLAEATAAG 117
Query: 217 PV----------TQVVENDADVQSEEE-------------DDNFV----DEIVRMKFFEM 249
PV T V+E A+ +E+ DD IVR K
Sbjct: 118 PVDTGTSRGRSATAVLEAPAETAVDEDTATDELEVPGPRWDDGVAPSQPGRIVREKQHSA 177
Query: 250 PPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
P+TV +A+ Q+E V HDFY F + ETG+ ++VY+RK YG+I
Sbjct: 178 EPMTVDDALYQMELVGHDFYLFNDSETGKPSVVYRRKGFDYGLI 221
>gi|432340094|ref|ZP_19589589.1| hypothetical protein Rwratislav_24491 [Rhodococcus wratislaviensis
IFP 2016]
gi|430774827|gb|ELB90395.1| hypothetical protein Rwratislav_24491 [Rhodococcus wratislaviensis
IFP 2016]
Length = 225
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 106/209 (50%), Gaps = 25/209 (11%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR--- 154
+ +++++G+N+E+ D + +V EK+ + + D + + E P R
Sbjct: 26 NAEIVVKGRNVEVPDHFRVYVSEKLSR--------LERFDPSIFLFDVELHHEPNRRQRK 77
Query: 155 ---RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R E+T K V RAE A++ YA+ + V++ ++ +LR+ K+++ H
Sbjct: 78 NCQRVEITA-RGKGPVARAEASADSFYAAFESVTAKLESRLRRTKDRKK---VHYGEKTP 133
Query: 212 LKVREPVTQVVENDA-------DVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENV 264
+ V E + E+D+ + + D++ +VR K + P+TV +A+ ++E V
Sbjct: 134 VSVAEATAALAEDDSLGISPDISLDGQMPDEHTPGHVVRTKEHKAAPMTVDDALYEMELV 193
Query: 265 DHDFYGFRNEETGEINIVYKRKAGGYGVI 293
HDF+ F ++E+ + +VY+R A YG+I
Sbjct: 194 GHDFFLFHDKESDKATVVYRRHAFDYGLI 222
>gi|340360674|ref|ZP_08683141.1| S30AE family protein [Actinomyces sp. oral taxon 448 str. F0400]
gi|339883135|gb|EGQ73003.1| S30AE family protein [Actinomyces sp. oral taxon 448 str. F0400]
Length = 221
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 28/215 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + G+N E++ ++++VEEK K V + V+ V+V ++ + PR
Sbjct: 1 MDITVVGRNAEISSRLRDYVEEKAAK-VEQLDPRVQRVEVEVT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
R E+T+ +K ++RAE + +A+ D+ + +LR+ ++++ DH R++ + +
Sbjct: 55 RAEITVVSKG-PIIRAEASSSDRFAAFDIAMGKLTERLRRARDRKKDHRRYIVEVAKDR- 112
Query: 215 REPVTQ---VVENDADVQSEEE-----------DDNFVDE--IVRMKFFEMPPLTVSEAI 258
R P + VV + D E+ + D IVR K + P+ V EA+
Sbjct: 113 RSPAAEEAIVVPDTGDAPIEDSPTAPTEPGVAVESQLGDSPVIVRQKLHDAVPMAVDEAL 172
Query: 259 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
Q+E V H FY F + TG+ VY R YGVI
Sbjct: 173 YQMELVGHPFYLFIEKSTGQPCAVYHRHGWTYGVI 207
>gi|310830497|ref|YP_003965598.1| Ribosome-associated factor Y [Paenibacillus polymyxa SC2]
gi|309249964|gb|ADO59530.1| Ribosome-associated factor Y [Paenibacillus polymyxa SC2]
Length = 177
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 100/196 (51%), Gaps = 24/196 (12%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+V+LI KN ELT +++ + +++ K + + + +R+++ ++G+ +
Sbjct: 2 NVQLI--AKNFELTKGIRDAINKRLEKL---ENFIDKTTPIRITMETFKYGQKIEV---- 52
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+F V+AEE E +Y +ID+ + + +KL K+ K +D + + FN
Sbjct: 53 --MFNLHGSFVKAEETNEDLYVAIDMATDKLVKKLGKLARKRNDQKHNPQPFN------- 103
Query: 218 VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
++V D ++EE +I + K F M P+ EA+ Q++ + H+ + F N T
Sbjct: 104 -LEMVNEDCHCETEERR-----QITKRKKFTMKPMMEEEAVLQMKMLGHETFMFFNGATQ 157
Query: 278 EINIVYKRKAGGYGVI 293
+ ++Y+RK G YG+I
Sbjct: 158 RMCLLYQRKDGNYGII 173
>gi|262282228|ref|ZP_06059997.1| ribosomal subunit interface protein [Streptococcus sp. 2_1_36FAA]
gi|262262682|gb|EEY81379.1| ribosomal subunit interface protein [Streptococcus sp. 2_1_36FAA]
Length = 180
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 111/199 (55%), Gaps = 27/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K ++ NR KV
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVVDKIERQIRKNKTK-------IERKNRTKV--ST 106
Query: 219 TQVVENDADVQSEEEDDNFVDE----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+Q+ DV EE VDE +VR K ++ P+ + EA+ Q+E + HDF+ + +
Sbjct: 107 SQIF---TDVVVEE-----VDEAPAKVVRSKHIDLKPMDLEEALLQMELLGHDFFIYTDV 158
Query: 275 ETGEINIVYKRKAGGYGVI 293
+ N++Y+R+ G G++
Sbjct: 159 DDNTTNVIYRREDGDLGLL 177
>gi|403527886|ref|YP_006662773.1| ribosomal subunit interface protein [Arthrobacter sp. Rue61a]
gi|403230313|gb|AFR29735.1| putative ribosomal subunit interface protein [Arthrobacter sp.
Rue61a]
Length = 246
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+++ +I G+NL ++D + + EK+ K + V+ VD ++S PR E
Sbjct: 4 TMEFMISGRNLTVSDRFREYAGEKISK-IESLGDKVQRVDAKVSKE-----TNPRQTPGE 57
Query: 158 VTLFTKKHG---VVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHMKGFNR-- 211
+T+ G V+RAE A +A+ DL + + +LR+ K+ K+ HGRH R
Sbjct: 58 LTVEVTVLGRGPVIRAEATAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKAVREA 117
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDE-----------------IVRMKFFEMPPLTV 254
EP + + + +E VDE ++R K F LT+
Sbjct: 118 TATLEPASASEPLYVEASNHQESAPPVDERSPYDIENDIPAGDSPVLIRRKVFPAASLTL 177
Query: 255 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+A++ +E V H+FY F ++ET ++VY+R YGVI
Sbjct: 178 DDAVDNMELVGHNFYLFLDKETNAPSVVYRRSGWTYGVI 216
>gi|315655989|ref|ZP_07908887.1| S30AE family protein [Mobiluncus curtisii ATCC 51333]
gi|315490053|gb|EFU79680.1| S30AE family protein [Mobiluncus curtisii ATCC 51333]
Length = 219
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 30/211 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+++ ++ +N E+ + ++EEK+ K V + + + VDV L+ K PR
Sbjct: 13 MEITVKARNAEIHPNFREYIEEKIAK-VEQLAPRTQRVDVELT-----HEKNPRQADTAE 66
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNRLK 213
R E+T+ K VVRAE + YA++D+ + + +LR+ +++ DH ++ + L
Sbjct: 67 RIELTVLGKG-PVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDHRKYEIPPDVELD 125
Query: 214 VREPVTQVVEND-----------ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLE 262
V Q+ E D + + E+ D+ V IVR K E ++V EA++++E
Sbjct: 126 V-----QIPEADEAPAVKPPLKLGESREEQLGDSPV--IVREKLHESRAMSVEEALDEME 178
Query: 263 NVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
V H FY F + ET + +VY RK YGVI
Sbjct: 179 LVGHPFYLFIDSETAQPAVVYHRKGWTYGVI 209
>gi|298345532|ref|YP_003718219.1| putative ribosome-associated inhibitor protein Y [Mobiluncus
curtisii ATCC 43063]
gi|298235593|gb|ADI66725.1| possible ribosome-associated inhibitor protein Y [Mobiluncus
curtisii ATCC 43063]
Length = 219
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 20/206 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+++ ++ +N E+ + ++EEK+ K V + + + VDV L+ K PR
Sbjct: 13 MEITVKARNAEIHPDFREYIEEKIAK-VEQLAPRTQRVDVELT-----HEKNPRQADTAE 66
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNRLK 213
R E+T+ K VVRAE + YA++D+ + + +LR+ +++ DH ++ + L
Sbjct: 67 RIELTVLGKG-PVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDHRKYEIPPDVELD 125
Query: 214 VR------EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHD 267
V+ P + + + E+ D+ V IVR K E ++V EA++++E V H
Sbjct: 126 VQIPEASEAPAAKPPLKLGESREEQLGDSPV--IVREKLHESRAMSVEEALDEMELVGHP 183
Query: 268 FYGFRNEETGEINIVYKRKAGGYGVI 293
FY F + ET + +VY RK YGVI
Sbjct: 184 FYLFIDSETAQPAVVYHRKGWTYGVI 209
>gi|258405720|ref|YP_003198462.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Desulfohalobium retbaense DSM 5692]
gi|257797947|gb|ACV68884.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfohalobium retbaense DSM 5692]
Length = 182
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 103/190 (54%), Gaps = 18/190 (9%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
K+ E +D ++++ E++ K + K+ H D+++++ + +IR+ +
Sbjct: 8 KSFEPSDHLRDYAEKRFDK-LNKYIHDTESADIQVNL------EVEKIRQMAEVVVNADG 60
Query: 166 GVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEND 225
+ A E++E +Y++ID+ ++ +LRKI++K K +R++ +PV V +
Sbjct: 61 NKLSAFEESEDMYSTIDMALDKVEAQLRKIRDK-------AKKKHRMEDTKPVRMDVFSY 113
Query: 226 ADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKR 285
+S E+ V IV+ +E P+TV EA QLE ++++F F N E +N++YKR
Sbjct: 114 VASESGEQ----VRNIVKTDHYEPKPMTVDEAAMQLETLEYEFLVFYNAENDSVNVIYKR 169
Query: 286 KAGGYGVIIP 295
+ G +G+I P
Sbjct: 170 RNGDFGLIDP 179
>gi|227889609|ref|ZP_04007414.1| ribosome-associated inhibitor protein Y [Lactobacillus johnsonii
ATCC 33200]
gi|227849752|gb|EEJ59838.1| ribosome-associated inhibitor protein Y [Lactobacillus johnsonii
ATCC 33200]
Length = 196
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 109/205 (53%), Gaps = 23/205 (11%)
Query: 91 SWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFG 148
+ +G + +K ++G+N+E+TD ++ +V++++ K + K+ + +V + L V
Sbjct: 9 TLEGESTMLKYNVRGENVEVTDALREYVQKRLNK-LEKYFEINSDVIAHINLKVYPDHTA 67
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
K EVT+ + V+RAE+ + +Y SID VS ++R++RK K + + R KG
Sbjct: 68 K------VEVTI-PLPYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTRINRKSRE-KG 119
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDF 268
D++ E++ D IVR K ++ P++ EA+ Q++ + HDF
Sbjct: 120 LKDFFY-----------EDLEEEKKAPKEFD-IVRNKHLDLKPMSAEEAVLQMDLLGHDF 167
Query: 269 YGFRNEETGEINIVYKRKAGGYGVI 293
+ F + +T +IVY+R G YG+I
Sbjct: 168 FVFEDADTNGTSIVYRRNDGRYGLI 192
>gi|430822864|ref|ZP_19441439.1| ribosomal subunit interface protein [Enterococcus faecium E0120]
gi|430865543|ref|ZP_19481178.1| ribosomal subunit interface protein [Enterococcus faecium E1574]
gi|430442793|gb|ELA52814.1| ribosomal subunit interface protein [Enterococcus faecium E0120]
gi|430552890|gb|ELA92607.1| ribosomal subunit interface protein [Enterococcus faecium E1574]
Length = 183
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 16/191 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K + R G N T +
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRET-GMNT----ADATALF 114
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 282
+ + +++ E D IVR K + P+ EA+ Q+ + H+F+ F + T +IV
Sbjct: 115 NEEDENENDSELD-----IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAGTNGTSIV 169
Query: 283 YKRKAGGYGVI 293
Y+RK G YG+I
Sbjct: 170 YRRKDGKYGLI 180
>gi|291542881|emb|CBL15991.1| ribosomal subunit interface protein [Ruminococcus bromii L2-63]
Length = 178
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 155 RCEVTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
R V + + +G++ RAE + ++D V I+ R++RK K R K
Sbjct: 47 RQTVEITIRDNGMIYRAESTMPEMNDALDKVCDILMRQIRKNK------TRLEKKIKSAG 100
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
+ + +T+ + D E EDD + +VR K + P++V EAI ++ V+H+F+ F N
Sbjct: 101 IEDLITEAAQTD-----EPEDDEY--SVVRKKHVLVKPISVDEAILEMNMVNHNFFMFIN 153
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
ET EIN+VYKR G YGV+ P
Sbjct: 154 SETDEINVVYKRADGNYGVLEP 175
>gi|392415249|ref|YP_006451854.1| SSU ribosomal protein S30P [Mycobacterium chubuense NBB4]
gi|390615025|gb|AFM16175.1| SSU ribosomal protein S30P [Mycobacterium chubuense NBB4]
Length = 228
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 107/207 (51%), Gaps = 17/207 (8%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-C 156
S +++++G+N+E+ D + +V EK+ + + + + DV L + K R R+ C
Sbjct: 25 SAEVVVKGRNVEVPDHFRIYVAEKLSR-LERFDRSIYLFDVEL-----DHEKNRRQRKNC 78
Query: 157 E-VTLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG--------RHM 206
+ V + + G VVR E A++ YA+ + +S ++ +LRK K++ H
Sbjct: 79 QHVEITARGRGPVVRGEACADSFYAAFESAASKLEARLRKSKDRRKIHYGDKTPVSLAEA 138
Query: 207 KGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDH 266
RL+ E AD QS + D+ IVR+K P+TV +A+ ++E V H
Sbjct: 139 CAPERLEAVFAAPSGGEVSADGQSADTLDHEPGRIVRVKEHPANPMTVDDALYEMELVGH 198
Query: 267 DFYGFRNEETGEINIVYKRKAGGYGVI 293
DF+ F ++ET + +VY+R A YG+I
Sbjct: 199 DFFLFHDKETDKPCVVYRRHAYDYGLI 225
>gi|342216380|ref|ZP_08709027.1| ribosomal subunit interface-like protein [Peptoniphilus sp. oral
taxon 375 str. F0436]
gi|341587270|gb|EGS30670.1| ribosomal subunit interface-like protein [Peptoniphilus sp. oral
taxon 375 str. F0436]
Length = 142
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 79/140 (56%), Gaps = 12/140 (8%)
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
+ E+T+F H ++RAEE + +YASID+ ++R++RK K K + N +
Sbjct: 11 KVEITVFLPGH-ILRAEESTDDMYASIDIAVQALERQVRKYKTKLKKRYQ-----NNDSI 64
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
R + E + EE D +++R K F++ P+ + EAI Q++ ++H+F+ + +
Sbjct: 65 R---FENFEQEKPKADEESPDG---QLIRNKDFDLRPMAIDEAILQMDLLNHNFFVYLDA 118
Query: 275 ETGEINIVYKRKAGGYGVII 294
+ E+ +VY+RK G YG II
Sbjct: 119 DQDEVCVVYRRKDGNYGRII 138
>gi|319947534|ref|ZP_08021764.1| ribosomal subunit interface protein [Streptococcus australis ATCC
700641]
gi|319746222|gb|EFV98485.1| ribosomal subunit interface protein [Streptococcus australis ATCC
700641]
Length = 181
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 111/199 (55%), Gaps = 28/199 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ + ++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIHDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TL----FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
T+ T +RAE+ ++ +Y SIDLV I+R++RK K K ++ NR K
Sbjct: 57 TIPLGSIT-----LRAEDVSQDMYGSIDLVVDKIERQIRKNKTK-------IEKKNRSK- 103
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
T + DA V E+ ++++VR K ++ P+ + EAI Q+E + HDF+ +++
Sbjct: 104 --SATSKIFTDALV----EESVALEKVVRTKTIDIEPMELDEAILQMELLGHDFFIYKDV 157
Query: 275 ETGEINIVYKRKAGGYGVI 293
E N++Y+R+ G G++
Sbjct: 158 EDNTTNVIYRREDGDVGLL 176
>gi|254392874|ref|ZP_05008043.1| ribosomal subunit interface protein [Streptomyces clavuligerus ATCC
27064]
gi|326441392|ref|ZP_08216126.1| hypothetical protein SclaA2_10013 [Streptomyces clavuligerus ATCC
27064]
gi|197706530|gb|EDY52342.1| ribosomal subunit interface protein [Streptomyces clavuligerus ATCC
27064]
Length = 242
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 26/216 (12%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
V ++++G+ E+ + + HV EK+ + K V +DV +S + + R R
Sbjct: 12 CVDIVVKGRKTEVPERFRKHVAEKLKLDKIQKLDAKVISLDVEVS-KEHNPRQADRSDRV 70
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL---K 213
E+TL ++ V+RAE A YA++DL + ++ +LRK +K + +G RL +
Sbjct: 71 EITLHSRG-PVIRAEAAAGDPYAALDLATGKLEARLRKQHDKRNTR----RGNGRLSAAE 125
Query: 214 VREPVTQVVENDADVQS--EEEDDNFVDE--------------IVRMKFFEMPPLTVSEA 257
V + V V E +A+ Q EE+ + +VR K P+T+ +A
Sbjct: 126 VADVVPGVAELNANGQPVVEEQQPPAIPTTRIGSLEVQGEGPLVVREKIHTAAPMTLDQA 185
Query: 258 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+ ++E V HDFY F + ET + ++VY+R A YGVI
Sbjct: 186 LYEMELVGHDFYLFVDSETKQPSVVYRRHAYDYGVI 221
>gi|89067359|ref|ZP_01154872.1| ribosomal subunit interface protein, putative [Oceanicola
granulosus HTCC2516]
gi|89046928|gb|EAR52982.1| ribosomal subunit interface protein, putative [Oceanicola
granulosus HTCC2516]
Length = 192
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 18/198 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I GK +++ + + HVE + + V K++ + V S G EF CE +
Sbjct: 5 ISGKQIDIGEALSAHVESNLNETVGKYAGRPTDATVIFSKSGPEF-------HCEAVIHL 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+A+ A +YA+ D S + ++LR+ K + DH +R +V+
Sbjct: 58 STGLTAQAKGHAHDIYAAFDSASEKMDKQLRRYKRRLKDH-------HRERVQPVELSTA 110
Query: 223 ENDADVQSEEEDDNFVDEIVRMKFFEM----PPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ SE EDD ++ M EM P L+V EA+ Q+E FRNE
Sbjct: 111 PSYILASSESEDDAQEQDLSSMIIAEMETSIPSLSVGEAVMQMEIAHAPVLVFRNEGHSG 170
Query: 279 INIVYKRKAGGYGVIIPK 296
IN+VY+R+ G G I P+
Sbjct: 171 INVVYRREDGNIGWIDPR 188
>gi|289449672|ref|YP_003474818.1| ribosomal subunit interface protein [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184219|gb|ADC90644.1| ribosomal subunit interface protein [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 180
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 103/201 (51%), Gaps = 27/201 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR--GGEFGKGPRIRRC 156
+ + I GK + + + + N V K+ K + + + V + VR G + +C
Sbjct: 1 MNITITGKGMNIGEQLHNRVVSKLSKF---NRYFGDDAKVSVKVRPEGDD--------KC 49
Query: 157 -EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
E+T+ +H + R+E A V+ ++DL + ++R++RK K K + ++ + +K
Sbjct: 50 MEITIRVSRH-IYRSEAVAGDVFTALDLAMAGMERQIRKQKSKIE---KKIREYAYMK-- 103
Query: 216 EPVTQVVE-NDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
E + + E D D E+ I++ K FE+ +T EA Q+E + H F+ F N
Sbjct: 104 EALQKAAEYTDTDCSPEDSS------IIKHKQFELAEMTADEAALQMELIGHSFHLFLNS 157
Query: 275 ETGEINIVYKRKAGGYGVIIP 295
ETG++ +VYKRK G YG+I P
Sbjct: 158 ETGKVALVYKRKDGNYGLIEP 178
>gi|184200530|ref|YP_001854737.1| hypothetical protein KRH_08840 [Kocuria rhizophila DC2201]
gi|183580760|dbj|BAG29231.1| hypothetical protein [Kocuria rhizophila DC2201]
Length = 231
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 28/226 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L IQG+N+ L D K +VEEK + + V+ ++V+++ G G + R E+
Sbjct: 1 MELNIQGRNVTLPDRFKEYVEEK-SERFQQLGDKVQSIEVKVTKDNG--ASGHQGMRVEI 57
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR-LKVREP 217
T+ + V+RAE ++ +A+ D + +LR+ +++ H G R + V E
Sbjct: 58 TV-VGRGPVIRAEARSDDKFAAFDEAYGKLVEQLRRARDRRK---IHRAGHQRPIAVHEA 113
Query: 218 VTQ--VVE--------NDADVQSEEEDDNFVDEI----------VRMKFFEMPPLTVSEA 257
VV + SE ED F E +R K F +TV EA
Sbjct: 114 TGSLPVVPSSGSFTGFDSPQALSEAEDAAFDTEYPLSDAPTPVEIRRKRFPAHQITVDEA 173
Query: 258 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKK 303
++Q+E V HDF+ F ++ET E + VY+RK YGVI +G+A++
Sbjct: 174 VDQMELVGHDFFIFVDKETQEPSAVYRRKGWQYGVISLSQDGRAEE 219
>gi|455649585|gb|EMF28389.1| hypothetical protein H114_14401 [Streptomyces gancidicus BKS 13-15]
Length = 230
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 35/219 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 1 MDIVVKGRKTEVPERFRKHVAEKLNLEKIQKLDGKVMSLDVEVS-KEPNPRQADRCDRVE 59
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + + +LRK +H K F+R R
Sbjct: 60 ITLRSRG-PVIRAEASASDPYAALDLAAEKLDARLRK---------QHDKRFSRRGARRI 109
Query: 217 PVTQVVE--------NDADVQSEEEDDNFVDE--------------IVRMKFFEMPPLTV 254
P +V + N + + +E + V +VR K P+T+
Sbjct: 110 PAAEVPDHVPGVATLNGSGASTAQEQEQAVPTKKIGSLEVQGDGPLVVREKTHVAAPMTL 169
Query: 255 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
+A+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 170 DQALYEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 208
>gi|116627283|ref|YP_819902.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus thermophilus LMD-9]
gi|386086060|ref|YP_006001934.1| Ribosome-associated factor Y [Streptococcus thermophilus ND03]
gi|387909164|ref|YP_006339470.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus thermophilus MN-ZLW-002]
gi|116100560|gb|ABJ65706.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Streptococcus thermophilus LMD-9]
gi|312277773|gb|ADQ62430.1| Ribosome-associated factor Y [Streptococcus thermophilus ND03]
gi|387574099|gb|AFJ82805.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus thermophilus MN-ZLW-002]
Length = 182
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 109/198 (55%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K V K+ H +E+ R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSK-VEKYFHEDQELHARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T +RAE+ + +Y SIDLV I R++RK K K + K RE V
Sbjct: 57 TIPTGS-VTLRAEDVSLDMYGSIDLVVDKIARQIRKNKTKIAR-----------KYREKV 104
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
+ EE ++ E+VR+K E+ P+ V EAI Q+E + HDF+ + + +
Sbjct: 105 PTGEMFSTEFNKEEVEEAPAVEVVRIKNIELKPMDVEEAILQMELLGHDFFIYTDSKDHT 164
Query: 279 INIVYKRKAGGYGVIIPK 296
N++YKR+ G YG+I K
Sbjct: 165 TNVLYKREDGNYGLIEAK 182
>gi|322391163|ref|ZP_08064635.1| ribosomal subunit interface protein [Streptococcus peroris ATCC
700780]
gi|321145916|gb|EFX41305.1| ribosomal subunit interface protein [Streptococcus peroris ATCC
700780]
Length = 182
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 109/195 (55%), Gaps = 19/195 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ GK ++ EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQEGQELDARVNLKVYR-GKTAKV---EV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K R N++ +
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIERKNR-----NKVSTSQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
T V + DV + +VR K ++ P+ + EA+ Q++ + HDF+ + + E
Sbjct: 111 TDAVVEETDVAQPK--------VVRSKQIDLKPMDLEEALLQMDLLGHDFFIYIDVEDET 162
Query: 279 INIVYKRKAGGYGVI 293
N++Y+R+ G G++
Sbjct: 163 TNVIYRREDGDIGLL 177
>gi|305679910|ref|ZP_07402720.1| ribosomal subunit interface protein [Corynebacterium matruchotii
ATCC 14266]
gi|305660530|gb|EFM50027.1| ribosomal subunit interface protein [Corynebacterium matruchotii
ATCC 14266]
Length = 221
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 28/211 (13%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFG--KGPRIR--- 154
K+ I G+N+E+ + V K+ K + +D L+ E + PR
Sbjct: 17 KVTITGRNVEVPEHFAERVHSKLAK--------IARLDPTLTFFHVELQHERNPRRADES 68
Query: 155 -RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES----------DHG 203
R ++T K H + RAE ++ YA+++ V S ++R LRK+KE+ S G
Sbjct: 69 DRIQITATGKGH-IARAEAKEDSFYAALETVLSRMERSLRKVKERRSISLSGHRAPIGTG 127
Query: 204 RHMKGFNRLKVREPVTQV-VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLE 262
KG +K + V + D D +++ +D ++VR K P++V +A+ ++E
Sbjct: 128 EAAKGL--VKEADKVQAAGSKYDHDPYADQVEDVLPGQVVRTKEHVANPMSVDDALSEME 185
Query: 263 NVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
V HDFY F N+E + ++VY+R A YG+I
Sbjct: 186 LVGHDFYLFINKENNQPSVVYRRHAFDYGLI 216
>gi|225020674|ref|ZP_03709866.1| hypothetical protein CORMATOL_00681 [Corynebacterium matruchotii
ATCC 33806]
gi|224946620|gb|EEG27829.1| hypothetical protein CORMATOL_00681 [Corynebacterium matruchotii
ATCC 33806]
Length = 219
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 28/211 (13%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFG--KGPRIR--- 154
K+ I G+N+E+ + V K+ K + +D L+ E + PR
Sbjct: 15 KVTITGRNVEVPEHFAERVHSKLAK--------IARLDPTLTFFHVELQHERNPRRADES 66
Query: 155 -RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES----------DHG 203
R ++T K H + RAE ++ YA+++ V S ++R LRK+KE+ S G
Sbjct: 67 DRIQITATGKGH-IARAEAKEDSFYAALETVLSRMERSLRKVKERRSISLSGHRAPIGTG 125
Query: 204 RHMKGFNRLKVREPVTQV-VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLE 262
KG +K + V + D D +++ +D ++VR K P++V +A+ ++E
Sbjct: 126 EAAKGL--VKEADKVQAAGSKYDHDPYADQVEDVLPGQVVRTKEHVANPMSVDDALSEME 183
Query: 263 NVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
V HDFY F N+E + ++VY+R A YG+I
Sbjct: 184 LVGHDFYLFINKENNQPSVVYRRHAFDYGLI 214
>gi|440698072|ref|ZP_20880443.1| ribosomal subunit interface protein [Streptomyces turgidiscabies
Car8]
gi|440279525|gb|ELP67396.1| ribosomal subunit interface protein [Streptomyces turgidiscabies
Car8]
Length = 232
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 103/214 (48%), Gaps = 25/214 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + K V +DV +S + + R R E
Sbjct: 1 MDIVVKGRKTEVPERFRKHVAEKLKLDRIQKLDGKVISLDVEVS-KEPNPRQADRSDRVE 59
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+TL ++ V+RAE A YA++DL + ++ +LRK +K +G RL E
Sbjct: 60 ITLHSRG-PVIRAEAAASDPYAALDLAADKLEARLRKQHDKRYT----RRGAGRLTAAEV 114
Query: 218 VTQVVE------NDADVQSEEEDDNFVDEI------------VRMKFFEMPPLTVSEAIE 259
V + N V E+ D V I VR K P+T+ +A+
Sbjct: 115 ADHVPDAATLNGNGHPVHEEDADGVPVKRIGSLEVKGEGPLIVREKTHVASPMTLDQALY 174
Query: 260 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 293
++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 175 EMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 208
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.127 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,706,772,714
Number of Sequences: 23463169
Number of extensions: 198916508
Number of successful extensions: 3143189
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9201
Number of HSP's successfully gapped in prelim test: 1728
Number of HSP's that attempted gapping in prelim test: 2621646
Number of HSP's gapped (non-prelim): 298103
length of query: 319
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 177
effective length of database: 9,027,425,369
effective search space: 1597854290313
effective search space used: 1597854290313
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 77 (34.3 bits)