Your job contains 1 sequence.
>020949
MEKKVMQLCEEAKRGAEAAVMAEGEAEKAWTAWCIDALDQLNKSDITCPLLVSTQLVRYL
LPLTEHPTKKIQDFASDLIVSWRDMFLEQIRDEKKGSCTIPGDTEPAKIEKVDKRTSEEC
QEISGVGIVKVQKVDQNSTSSSSNVVRSEIVETEETNSADNVNVGNSITEEGEASGIILH
KLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKW
GRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHE
DEERARLWKEHTRKYMQRM
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020949
(319 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064195 - symbol:TFIIS "transcript elongation ... 303 5.7e-27 1
TAIR|locus:2052351 - symbol:AT2G42730 species:3702 "Arabi... 248 4.6e-20 1
TAIR|locus:2124097 - symbol:AT4G18720 species:3702 "Arabi... 216 9.5e-18 1
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 173 5.6e-13 2
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 160 8.2e-13 2
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 188 9.4e-13 1
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 162 4.0e-12 2
UNIPROTKB|O75764 - symbol:TCEA3 "Transcription elongation... 182 5.3e-12 1
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 157 2.1e-11 2
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 172 8.8e-11 1
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 172 8.9e-11 1
UNIPROTKB|E2RIY6 - symbol:TCEA3 "Uncharacterized protein"... 171 1.2e-10 1
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 164 1.5e-10 1
UNIPROTKB|E7ER40 - symbol:PHF3 "PHD finger protein 3" spe... 174 2.9e-10 1
UNIPROTKB|I3LFG3 - symbol:SPOCD1 "Uncharacterized protein... 157 3.7e-10 1
UNIPROTKB|E7EVH3 - symbol:PHF3 "PHD finger protein 3" spe... 174 3.8e-10 1
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 164 4.9e-10 1
FB|FBgn0030663 - symbol:CG8117 species:7227 "Drosophila m... 146 7.1e-10 1
UNIPROTKB|Q92576 - symbol:PHF3 "PHD finger protein 3" spe... 174 8.3e-10 1
RGD|1304925 - symbol:Phf3 "PHD finger protein 3" species:... 172 1.4e-09 1
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 157 2.5e-09 1
UNIPROTKB|F1SV96 - symbol:SPOCD1 "Uncharacterized protein... 166 3.6e-09 1
UNIPROTKB|E2R727 - symbol:PHF3 "Uncharacterized protein" ... 168 4.1e-09 1
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 155 6.1e-09 1
UNIPROTKB|E2R336 - symbol:SPOCD1 "Uncharacterized protein... 161 7.1e-09 1
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 152 1.4e-08 1
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 151 1.9e-08 1
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 150 2.4e-08 1
UNIPROTKB|F1MIT2 - symbol:TCEA1 "Transcription elongation... 149 2.6e-08 1
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 149 3.2e-08 1
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 149 3.2e-08 1
TAIR|locus:504954948 - symbol:AT5G42325 species:3702 "Ara... 145 3.3e-08 1
UNIPROTKB|F1NP36 - symbol:TCEA1 "Uncharacterized protein"... 149 3.5e-08 1
UNIPROTKB|E1BVY1 - symbol:PHF3 "Uncharacterized protein" ... 167 4.0e-08 2
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 148 4.2e-08 1
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 148 4.7e-08 1
UNIPROTKB|I3L6H4 - symbol:I3L6H4 "Uncharacterized protein... 129 5.6e-08 1
UNIPROTKB|F1NP37 - symbol:TCEA1 "Uncharacterized protein"... 146 5.8e-08 1
UNIPROTKB|G5E5M1 - symbol:PHF3 "Uncharacterized protein" ... 165 6.8e-08 2
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 146 7.2e-08 1
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 146 7.2e-08 1
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 146 7.2e-08 1
ZFIN|ZDB-GENE-090313-207 - symbol:phf3 "PHD finger protei... 156 7.8e-08 1
UNIPROTKB|H0YF46 - symbol:SPOCD1 "SPOC domain-containing ... 143 9.4e-08 1
UNIPROTKB|F1MG39 - symbol:F1MG39 "Uncharacterized protein... 149 3.1e-07 1
TAIR|locus:2050311 - symbol:AT2G25640 species:3702 "Arabi... 146 3.9e-07 1
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 140 4.1e-07 1
UNIPROTKB|Q6ZMY3 - symbol:SPOCD1 "SPOC domain-containing ... 148 4.3e-07 1
TAIR|locus:2179419 - symbol:AT5G25520 species:3702 "Arabi... 147 4.3e-07 1
UNIPROTKB|E9PPM7 - symbol:SPOCD1 "SPOC domain-containing ... 143 6.8e-07 1
UNIPROTKB|G1K224 - symbol:TCEA2 "Transcription elongation... 136 1.1e-06 1
UNIPROTKB|F1NFF0 - symbol:Gga.41084 "Uncharacterized prot... 147 1.1e-06 1
UNIPROTKB|F1NGH5 - symbol:Gga.41084 "Uncharacterized prot... 147 1.1e-06 1
ASPGD|ASPL0000075205 - symbol:AN4861 species:162425 "Emer... 131 1.3e-06 2
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 132 2.4e-06 1
UNIPROTKB|F1LV22 - symbol:F1LV22 "Uncharacterized protein... 126 1.3e-05 1
ZFIN|ZDB-GENE-030131-6117 - symbol:dido1 "death inducer-o... 147 1.3e-05 2
UNIPROTKB|E1BCR2 - symbol:DIDO1 "Uncharacterized protein"... 135 2.4e-05 1
UNIPROTKB|E1BRR3 - symbol:TCEANC "Uncharacterized protein... 124 3.8e-05 1
UNIPROTKB|Q9BTC0 - symbol:DIDO1 "Death-inducer obliterato... 132 5.3e-05 1
TAIR|locus:2144211 - symbol:AT5G11430 species:3702 "Arabi... 127 6.5e-05 1
UNIPROTKB|F1LWI4 - symbol:F1LWI4 "Uncharacterized protein... 111 0.00021 1
FB|FBgn0082831 - symbol:pps "protein partner of snf" spec... 129 0.00023 2
UNIPROTKB|F1PLS2 - symbol:DIDO1 "Uncharacterized protein"... 131 0.00024 2
POMBASE|SPAC20H4.03c - symbol:tfs1 "transcription elongat... 96 0.00027 2
CGD|CAL0002729 - symbol:orf19.4537 species:5476 "Candida ... 108 0.00054 2
MGI|MGI:1344352 - symbol:Dido1 "death inducer-obliterator... 132 0.00056 2
UNIPROTKB|F1M109 - symbol:F1M109 "Uncharacterized protein... 111 0.00097 1
>TAIR|locus:2064195 [details] [associations]
symbol:TFIIS "transcript elongation factor IIS"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003746 "translation elongation factor
activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0010162 "seed
dormancy process" evidence=RCA;IMP] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=IMP;RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IMP] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0009739 GO:GO:0009845
GO:GO:0003746 GO:GO:0009910 EMBL:AC005499 GO:GO:0010162
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0034243 Gene3D:1.20.930.10
SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 HSSP:P23193
OMA:LEIWKKV UniGene:At.13130 EMBL:AY150517 EMBL:AK117557
IPI:IPI00532116 PIR:E84806 RefSeq:NP_181390.1
ProteinModelPortal:Q9ZVH8 SMR:Q9ZVH8 IntAct:Q9ZVH8 STRING:Q9ZVH8
PRIDE:Q9ZVH8 EnsemblPlants:AT2G38560.1 GeneID:818438
KEGG:ath:AT2G38560 TAIR:At2g38560 InParanoid:Q9ZVH8
PhylomeDB:Q9ZVH8 ProtClustDB:CLSN2683212 Genevestigator:Q9ZVH8
Uniprot:Q9ZVH8
Length = 378
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 76/205 (37%), Positives = 128/205 (62%)
Query: 102 GDTEPAKIEKVDKRTSEECQEISGVGIVKVQKV-DQXXXXXXXXXXXXEIVETEETNSAD 160
GD+ AK KV+++ + + ++GV I + KV D + V+ E+ S D
Sbjct: 129 GDS--AKSIKVERKEPDN-KVVTGVKIER--KVPDIKVTNGTKIDYRGQAVKDEKV-SKD 182
Query: 161 NVNVGNSITEEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEV 220
N + S+ +A+ KL++ ++CND R+ +RE + +AL +V+GEAD+ R+ V
Sbjct: 183 NQS---SMKAPAKAANAP-PKLTAM-LKCNDPVRDKIRELLVEALCRVAGEADDYERESV 237
Query: 221 NACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETV 280
NA D +RVA+++ES MFEK GRS G K+KYR+++ NL+D NPD RR+VL G++ PE +
Sbjct: 238 NASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKL 297
Query: 281 VGMTAKEMASDEMLRSYQHEDEERA 305
+ ++A++MASD+ + ++ +E+A
Sbjct: 298 ITLSAEDMASDKR-KQENNQIKEKA 321
Score = 153 (58.9 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 44/136 (32%), Positives = 67/136 (49%)
Query: 1 MEKKVMQLCEEAKRGXXXXXXXXXXXXXXWTAWCIDALDQLNKSDITCPLLVSTQLVRYL 60
ME ++ L E AK+ + CIDAL QL K +T LV+TQ+ + L
Sbjct: 1 MESDLIDLFEGAKKAADAAALDGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKKL 60
Query: 61 LPLTEHPTKKIQDFASDLIVSWRDMFLEQIRDEKKGSCTIPGDTEPAKIEKVDKRTSEEC 120
L +HP + I+ A+DL+ W+ + +E+ KK T G E AK+ K+D
Sbjct: 61 RSLAKHPVEDIKSVATDLLEIWKKVVIEETAKAKKTEGT-NGCKE-AKVNKMD------V 112
Query: 121 QEISGVGIVKVQKVDQ 136
++ S VKVQK+ +
Sbjct: 113 EKPSNPAPVKVQKLQR 128
>TAIR|locus:2052351 [details] [associations]
symbol:AT2G42730 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001810 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF00646 Pfam:PF07500
PROSITE:PS50181 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 SUPFAM:SSF81383 InterPro:IPR006566
SMART:SM00579 Gene3D:1.10.472.30 SUPFAM:SSF46942 InterPro:IPR027191
PANTHER:PTHR32555 InterPro:IPR013101 Pfam:PF07723 IPI:IPI00519130
RefSeq:NP_181801.1 UniGene:At.36975 ProteinModelPortal:F4IP72
SMR:F4IP72 PRIDE:F4IP72 EnsemblPlants:AT2G42730.1 GeneID:818873
KEGG:ath:AT2G42730 Uniprot:F4IP72
Length = 737
Score = 248 (92.4 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 57/135 (42%), Positives = 83/135 (61%)
Query: 184 SSKIRCNDCFREVVREKVCDALSKVSGE-ADEEIRDEVNACDSVRVAIALESAMFEKWGR 242
S+ + D R+ VRE + +L KV+ E D E++ V ACD VA+++ESAMFEK G
Sbjct: 597 STMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEKLGC 656
Query: 243 SDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDE 302
GP+K KYR++L N+ D NPD RRKVL G++ E +V M +EM S+++ + Q +
Sbjct: 657 FMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQRI-K 715
Query: 303 ERARLWKEHTRKYMQ 317
E AR +E K +Q
Sbjct: 716 ENARFKEESRMKILQ 730
>TAIR|locus:2124097 [details] [associations]
symbol:AT4G18720 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF07500 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00509 SMART:SM00510 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 EMBL:AL161549 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 EMBL:AL035526
UniGene:At.22875 HOGENOM:HOG000195015 KO:K03145 IPI:IPI00529744
PIR:T04864 RefSeq:NP_193607.1 ProteinModelPortal:Q9SN41 SMR:Q9SN41
EnsemblPlants:AT4G18720.1 GeneID:827606 KEGG:ath:AT4G18720
TAIR:At4g18720 eggNOG:KOG1105 InParanoid:Q9SN41 PhylomeDB:Q9SN41
ProtClustDB:CLSN2685449 ArrayExpress:Q9SN41 Genevestigator:Q9SN41
Uniprot:Q9SN41
Length = 266
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 47/104 (45%), Positives = 66/104 (63%)
Query: 188 RCNDCFREVVREKVCDALSKVSGEA-DEEIRDEVNACDSVRVAIALESAMFEKWGRSDGP 246
+ D R+ VRE + +L+KV+ E D E++ V ACD VA+++E+AMFE G GP
Sbjct: 112 KTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFENLGCFMGP 171
Query: 247 YKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMAS 290
K KYR++L N+ D NPD RRKVL G++ E +V M +EM S
Sbjct: 172 QKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGS 215
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 173 (66.0 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 42/115 (36%), Positives = 68/115 (59%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLG 256
VR+K + LS +A++ +D CD ++A +E ++++ +D Y+ + R+ +
Sbjct: 186 VRDKCVEMLSAAL-KAEDNFKDYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRIS 242
Query: 257 NLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEH 311
NLKDP+NP RR VL G + PE + MTA+EMASDE LR ++ + A +EH
Sbjct: 243 NLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDE-LRELRNAMTQEAI--REH 294
Score = 54 (24.1 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 31 TAWCIDALDQLNKSDITCPLLVSTQLVRYLLPLTEHPT-KKIQDFASDLIVSWRDMFLEQ 89
T +D L +LN ++ LL +T++ + + +H + K++ A LI +W+ + L+
Sbjct: 23 TEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL-LDS 81
Query: 90 IRDEKKGSCTIPGDTEPAKIEK 111
R K G + E AK EK
Sbjct: 82 PRTTK-GERE---EREKAKKEK 99
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 160 (61.4 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 41/110 (37%), Positives = 60/110 (54%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLG 256
VR K + LS D+ I + CD + I E +F ++ +D YK + R+ +
Sbjct: 148 VRIKCREMLSNALQTGDDYITIGSD-CDELGAQI--EECIFLEFKNTDMKYKNRVRSRIS 204
Query: 257 NLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERAR 306
NLKD KNP+ RR VL G V P+ + MTA+EMASDE+ ++ +E R
Sbjct: 205 NLKDAKNPNLRRNVLCGNVSPDRIAKMTAEEMASDELKEMRKNLTKEAIR 254
Score = 66 (28.3 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 26/97 (26%), Positives = 40/97 (41%)
Query: 35 IDALDQLNKSDITCPLLVSTQLVRYLLPLTEHPTK-KIQDFASDLIVSWRDMFLEQIRD- 92
+D L +L +T LL ST++ + + + T ++ A LI SW+ + E D
Sbjct: 29 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDDEVTSLAKSLIKSWKKLLDEPAADK 88
Query: 93 ---EKKGSCTIP----GDTEPAKIEKVDKRTSEECQE 122
EKK T P +T P E+ S E
Sbjct: 89 NSEEKKKERTTPVVSPSETSPEPREESSSSNSSSKSE 125
Score = 40 (19.1 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 102 GDTEPAKIEKVDKRTSEECQEISGVGIVKVQK 133
G E +I ++ K+ + Q+ +GVG + + K
Sbjct: 2 GKKEEEEIIRIAKKMDKMAQKKNGVGALDLLK 33
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 188 (71.2 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 72/287 (25%), Positives = 134/287 (46%)
Query: 31 TAWCIDALDQLNKSDITCPLLVSTQLVRYLLPLTEHPT-KKIQDFASDLIVSWRDMFLEQ 89
T +D L +LN ++ LL +T++ + + +H + K++ A LI +W+ + L+
Sbjct: 23 TEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL-LDS 81
Query: 90 IRDEKKGSCTIPGDTEPA-KIEKVDKRT-SEECQEISGVGIVKVQKVDQXXXXXXXXXXX 147
R K G+ E K +K +K S + +G+ + ++ +
Sbjct: 82 PRTTK-------GEREAREKAKKKEKGLGSSGWKPEAGLSPPRKKEGGEPKTRRDSVDSR 134
Query: 148 XEIVETEETNSADNVNVGNSITEEGEA-SGIILHKLSSSKIRCNDCFR--EVVREKVCDA 204
+ + S + N S E + S + + C+ + VR+K +
Sbjct: 135 SSTTSSPKRPSLERSNSSRSKVETPKTPSSPSTPTFAPAVCLLASCYLTGDSVRDKCVEM 194
Query: 205 LSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNP 264
LS +A+++ +D CD ++A +E ++++ +D Y+ + R+ + NLKDP+NP
Sbjct: 195 LSAAL-KAEDDFKDYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNP 251
Query: 265 DFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEH 311
RR VL G + PE + MTA+EMASDE LR ++ + A +EH
Sbjct: 252 GLRRNVLSGTISPELIAKMTAEEMASDE-LRELRNAMTQEAI--REH 295
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 162 (62.1 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 43/119 (36%), Positives = 64/119 (53%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLG 256
VR K C L + + D + + A D +A +E +++++ +D YK + R+ +
Sbjct: 140 VRTK-CRELLVAALQTDGD-HQTIGA-DCEHMAAQIEDYIYQEFKSTDMKYKTRLRSRIS 196
Query: 257 NLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEHTRKY 315
NLKD KNPD RR VL G + PE + MTA+EMAS E+ E R L KE R++
Sbjct: 197 NLKDQKNPDLRRNVLCGNISPERIASMTAEEMASPEL-------KEIRKALTKESIREH 248
Score = 56 (24.8 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 31 TAWCIDALDQLNKSDITCPLLVSTQLVRYLLPLTEHPT-KKIQDFASDLIVSWRDMF--L 87
T ID L +L ++ L ST++ + + + + +++Q A LI +W+ +
Sbjct: 23 TDGAIDLLQELKNMKMSLETLQSTRIGMSVNAVRKQSSDEEVQTLAKSLIKAWKKLLDGS 82
Query: 88 EQIRDEKKG 96
E +EKKG
Sbjct: 83 EGKPEEKKG 91
>UNIPROTKB|O75764 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9606 "Homo sapiens" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 EMBL:AL357134
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL109936 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385 CTD:6920
OrthoDB:EOG4NP741 EMBL:AK290272 EMBL:BC041613 EMBL:AJ223473
IPI:IPI00178146 RefSeq:NP_003187.1 UniGene:Hs.446354
ProteinModelPortal:O75764 SMR:O75764 IntAct:O75764 STRING:O75764
PhosphoSite:O75764 PaxDb:O75764 PRIDE:O75764 DNASU:6920
Ensembl:ENST00000450454 GeneID:6920 KEGG:hsa:6920 UCSC:uc021oig.1
GeneCards:GC01M023706 HGNC:HGNC:11615 HPA:HPA044960 MIM:604128
neXtProt:NX_O75764 PharmGKB:PA36374 InParanoid:O75764 OMA:KGLDCSD
ChiTaRS:TCEA3 GenomeRNAi:6920 NextBio:27073 ArrayExpress:O75764
Bgee:O75764 CleanEx:HS_TCEA3 Genevestigator:O75764
GermOnline:ENSG00000204219 Uniprot:O75764
Length = 348
Score = 182 (69.1 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 74/287 (25%), Positives = 133/287 (46%)
Query: 31 TAWCIDALDQLNKSDITCPLLVSTQLVRYLLPLTEHPT-KKIQDFASDLIVSWRDMFLEQ 89
T +D L +L+ ++ LL +T++ + + +H + K++ A LI +W+ + L+
Sbjct: 23 TEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL-LDS 81
Query: 90 IRDEKKGSCTIPGDTEPAKIEKVDKRTSEECQEISG-VGIVKVQKV-DQXXXXXXXXXXX 147
KG G+ E K +K +K EC + G+ +K +
Sbjct: 82 -PGPPKGE---KGE-EREKAKKKEKGL--ECSDWKPEAGLSPPRKKREDPKTRRDSVDSK 134
Query: 148 XEIVETEETNSADNVNVGNSITEEGEA-SGIILHKLSSSKIRCNDCFR--EVVREKVCDA 204
+ + S + N S E + S + +SS C+ + VR+K +
Sbjct: 135 SSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEM 194
Query: 205 LSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNP 264
LS +AD++ +D CD ++A +E ++++ +D Y+ + R+ + NLKDP+NP
Sbjct: 195 LSAAL-KADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNP 251
Query: 265 DFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEH 311
RR VL G + + MTA+EMASDE LR ++ + A +EH
Sbjct: 252 GLRRNVLSGAISAGLIAKMTAEEMASDE-LRELRNAMTQEAI--REH 295
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 157 (60.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 33/97 (34%), Positives = 58/97 (59%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLG 256
+R+K + L+ D++ +D C+++ I E ++++ +D YK + R+ +
Sbjct: 248 IRDKCIEMLTAAL-RTDDDYKDYGTNCEAMGAEI--EDYIYQETKATDMKYKNRVRSRIS 304
Query: 257 NLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
NLKDPKNP+ R+ VL G ++ + MTA+EMASDE+
Sbjct: 305 NLKDPKNPNLRKNVLAGAIELSRIASMTAEEMASDEL 341
Score = 62 (26.9 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 35 IDALDQLNKSDITCPLLVSTQLVRYLLPLTEHPTKK-IQDFASDLIVSWRDMFLEQIRDE 93
+D L +L ++T LL T++ + + +H T + + + A LI +W+ + LE ++
Sbjct: 27 LDLLRELKDFNMTLKLLQDTRIGMSVNGIRKHCTDEDVVNLAKILIKNWKRL-LESAQNP 85
Query: 94 KKGSCT-IPGDTEPAKIEKVDKRTSEE 119
K + + P+K RTS E
Sbjct: 86 KSERPNEVKNGSHPSKPSGSPSRTSPE 112
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 172 (65.6 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 68/288 (23%), Positives = 128/288 (44%)
Query: 31 TAWCIDALDQLNKSDITCPLLVSTQLVRYLLPLTEH-PTKKIQDFASDLIVSWRDMFLEQ 89
T +D L +L ++ LL +T++ + + +H K++ A LI +W+ Q
Sbjct: 23 TEGALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEVVALAKVLIRNWK-----Q 77
Query: 90 IRDEKKGSCTIPGDTEPAKIEKVDKRTSEECQEI---SGVGIVKVQKVDQXXXXXXXXXX 146
+ D T G+ +++ K +C + + + + ++V++
Sbjct: 78 LLDSP---ATPKGEKGEERVKAKKKEKGLDCSDWKPETSLSPPRKKRVEEPKDRRDSVDS 134
Query: 147 XXEIVETEETNSADNVNVGNSITEEGEA-SGIILHKLSSSKIRCNDCFR--EVVREKVCD 203
+ + S + N S E S + S C+ + VR+K +
Sbjct: 135 KSSATSSPKRPSMERSNSSKSKAETPRTPSSPSSPTFAPSVCLLAPCYLTGDSVRDKCVE 194
Query: 204 ALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKN 263
LS +AD++ +D CD ++A +E ++++ +D Y+ + R+ + NLKDP+N
Sbjct: 195 MLSAAL-KADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRN 251
Query: 264 PDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEH 311
P RR VL G + + MTA+EMASDE LR ++ + A +EH
Sbjct: 252 PGLRRNVLSGAISAGLIAKMTAEEMASDE-LRELRNAMTQEAI--REH 296
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 172 (65.6 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 68/288 (23%), Positives = 128/288 (44%)
Query: 31 TAWCIDALDQLNKSDITCPLLVSTQLVRYLLPLTEH-PTKKIQDFASDLIVSWRDMFLEQ 89
T +D L +L ++ LL +T++ + + +H K++ A LI +W+ Q
Sbjct: 23 TEGALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEVVALAKVLIRNWK-----Q 77
Query: 90 IRDEKKGSCTIPGDTEPAKIEKVDKRTSEECQEI---SGVGIVKVQKVDQXXXXXXXXXX 146
+ D T G+ +++ K +C + + + + ++V++
Sbjct: 78 LLDSP---ATPKGEKGEERVKAKKKEKGLDCSDWKPETSLSPPRKKRVEEPKDRRDSVDS 134
Query: 147 XXEIVETEETNSADNVNVGNSITEEGEA-SGIILHKLSSSKIRCNDCFR--EVVREKVCD 203
+ + S + N S E S + S C+ + VR+K +
Sbjct: 135 KSSATSSPKRPSMERSNSSKSKAETPRTPSSPSSPTFAPSVCLLAPCYLTGDSVRDKCVE 194
Query: 204 ALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKN 263
LS +AD++ +D CD ++A +E ++++ +D Y+ + R+ + NLKDP+N
Sbjct: 195 MLSAAL-KADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRN 251
Query: 264 PDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEH 311
P RR VL G + + MTA+EMASDE LR ++ + A +EH
Sbjct: 252 PGLRRNVLSGAISAGLIAKMTAEEMASDE-LRELRNAMTQEAI--REH 296
>UNIPROTKB|E2RIY6 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:KGLDCSD EMBL:AAEX03001757
Ensembl:ENSCAFT00000021079 Uniprot:E2RIY6
Length = 348
Score = 171 (65.3 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 70/284 (24%), Positives = 129/284 (45%)
Query: 38 LDQLNKSDITCPLLVSTQLVRYLLPLTEHPT-KKIQDFASDLIVSWRDMFLEQIRDEKKG 96
L +LN ++ LL +T++ + + +H + K++ A LI +W+ ++ D
Sbjct: 30 LKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWK-----RLLDS--- 81
Query: 97 SCTIPGDTEPAKIEKVDKRTSE---ECQEI---SGVGIVKVQKVDQXXXXXXXXXXXXEI 150
PG + K E+ DK E +C +G+ + ++ ++
Sbjct: 82 ----PGPPKGEKGEERDKAKKEKGLDCSNWKPETGLSPPRKKRAEEPKERRDSVDSKSSA 137
Query: 151 VETEETNSADNVNVGNSITEEGEA-SGIILHKLSSSKIRCNDCFR--EVVREKVCDALSK 207
+ + S + N G S E + + + S C+ + VR+K + LS
Sbjct: 138 TSSPKRPSMERSNSGKSKAETPKTPTSPSTPTFAPSVCLLAPCYLTGDSVRDKCVEMLSA 197
Query: 208 VSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFR 267
+A+++ +D CD ++A +E + E+ +D Y+ + R+ + NLKDP+NP R
Sbjct: 198 AL-KAEDDYKDYGVNCD--KMASEIEDHILEELKSTDMKYRNRVRSRISNLKDPRNPSLR 254
Query: 268 RKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEH 311
R VL G + + MTA+EMASDE LR ++ + A +EH
Sbjct: 255 RNVLSGAISAGLIAKMTAEEMASDE-LRELRNAMTQEAI--REH 295
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 164 (62.8 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 37/99 (37%), Positives = 57/99 (57%)
Query: 195 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAV 254
+ VR K C + + + D + + A D R++ +E +F G +D YK + R+
Sbjct: 109 DAVRNK-CREMLTAALQTDHD-HVAIGA-DCERLSAQIEECIFRDVGNTDMKYKNRVRSR 165
Query: 255 LGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ NLKD KNPD RR VL G + P+ + MT++EMASDE+
Sbjct: 166 ISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDEL 204
>UNIPROTKB|E7ER40 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00966918
ProteinModelPortal:E7ER40 SMR:E7ER40 Ensembl:ENST00000515594
ArrayExpress:E7ER40 Bgee:E7ER40 Uniprot:E7ER40
Length = 861
Score = 174 (66.3 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 57/231 (24%), Positives = 108/231 (46%)
Query: 99 TIPGDTEPAKIEKVDKRTSEECQ--EISGVGIVKVQKVDQXXXXXXXXXXXXEIVETEET 156
T+ + K E + R S +C+ EI + ++K+ Q E + E T
Sbjct: 91 TVKHKVKILKRESGEGRNSSDCRDNEIKKWQLAPLRKMGQPVLPRRSSEEKSEKIPKEST 150
Query: 157 N--------SADNVNVGNSITEEGEASGII-LHKLSSSKIRCNDCFREVVREKVCDALSK 207
S + + ++ G++ +H +S+ D R+ VR + D L K
Sbjct: 151 TVTCTGEKASKPGTHEKQEMKKKKVEKGVLNVHPAASASKPSADQIRQSVRHSLKDILMK 210
Query: 208 VSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFR 267
+++ ++ +E A +VA +E +F + +D YK KYR+++ NLKDPKN
Sbjct: 211 RLTDSNLKVPEEKAA----KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILF 266
Query: 268 RKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEHTRKYMQR 318
+KVL G+V P+ ++ M+ +E+AS E+ + E+ + ++ R+ +R
Sbjct: 267 KKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERR 317
>UNIPROTKB|I3LFG3 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
EMBL:CU861549 Ensembl:ENSSSCT00000023384 Uniprot:I3LFG3
Length = 222
Score = 157 (60.3 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 33/95 (34%), Positives = 62/95 (65%)
Query: 214 EEIRDEVNACDSVR-VAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLF 272
+E+ D V + +V +A +E+A+F+ ++G Y+ KYR++L NL+DP+NPD KV+
Sbjct: 9 QELPDLVLSEGAVEGLAAGIEAALFDLTHATNGHYRTKYRSLLFNLRDPRNPDLFLKVIH 68
Query: 273 GQVKPETVVGMTAKEMASDEMLRSYQHEDEERARL 307
G V P+ +V M + ++A E+ R ++ ++E+R +
Sbjct: 69 GDVTPQGLVRMNSVQLAPQELAR-WRDQEEKRGSM 102
>UNIPROTKB|E7EVH3 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00984758
ProteinModelPortal:E7EVH3 SMR:E7EVH3 Ensembl:ENST00000506783
ArrayExpress:E7EVH3 Bgee:E7EVH3 Uniprot:E7EVH3
Length = 1072
Score = 174 (66.3 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 57/231 (24%), Positives = 108/231 (46%)
Query: 99 TIPGDTEPAKIEKVDKRTSEECQ--EISGVGIVKVQKVDQXXXXXXXXXXXXEIVETEET 156
T+ + K E + R S +C+ EI + ++K+ Q E + E T
Sbjct: 636 TVKHKVKILKRESGEGRNSSDCRDNEIKKWQLAPLRKMGQPVLPRRSSEEKSEKIPKEST 695
Query: 157 N--------SADNVNVGNSITEEGEASGII-LHKLSSSKIRCNDCFREVVREKVCDALSK 207
S + + ++ G++ +H +S+ D R+ VR + D L K
Sbjct: 696 TVTCTGEKASKPGTHEKQEMKKKKVEKGVLNVHPAASASKPSADQIRQSVRHSLKDILMK 755
Query: 208 VSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFR 267
+++ ++ +E A +VA +E +F + +D YK KYR+++ NLKDPKN
Sbjct: 756 RLTDSNLKVPEEKAA----KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILF 811
Query: 268 RKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEHTRKYMQR 318
+KVL G+V P+ ++ M+ +E+AS E+ + E+ + ++ R+ +R
Sbjct: 812 KKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERR 862
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 164 (62.8 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 37/99 (37%), Positives = 57/99 (57%)
Query: 195 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAV 254
+ VR K C + + + D + + A D R++ +E +F G +D YK + R+
Sbjct: 136 DAVRNK-CREMLTAALQTDHD-HVAIGA-DCERLSAQIEECIFRDVGNTDMKYKNRVRSR 192
Query: 255 LGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ NLKD KNPD RR VL G + P+ + MT++EMASDE+
Sbjct: 193 ISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDEL 231
>FB|FBgn0030663 [details] [associations]
symbol:CG8117 species:7227 "Drosophila melanogaster"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017890 Pfam:PF01096 Pfam:PF07500 PIRSF:PIRSF006704
PROSITE:PS51133 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0022008 EMBL:AE014298 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003676 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0032784 eggNOG:COG1594 KO:K03145 HSSP:P23193
GeneTree:ENSGT00390000017794 EMBL:BT022128 EMBL:BT023150
RefSeq:NP_573049.2 UniGene:Dm.26636 SMR:Q9VXS6 IntAct:Q9VXS6
MINT:MINT-861025 STRING:Q9VXS6 EnsemblMetazoa:FBtr0074050
GeneID:32499 KEGG:dme:Dmel_CG8117 UCSC:CG8117-RA
FlyBase:FBgn0030663 InParanoid:Q9VXS6 OMA:PEELGSN OrthoDB:EOG4WSTSW
GenomeRNAi:32499 NextBio:778778 Uniprot:Q9VXS6
Length = 162
Score = 146 (56.5 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 228 VAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKE 287
+A LE A++ YK + R+ L NL+DPKNP+ R+K L GQ+ PE + MT +E
Sbjct: 32 MAAKLEDAIYGDLNGCKVKYKNRIRSRLANLRDPKNPELRQKFLLGQITPEELSKMTPEE 91
Query: 288 MASDEMLRSYQ 298
MASD+M + Q
Sbjct: 92 MASDDMKQMRQ 102
>UNIPROTKB|Q92576 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=NAS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0007275
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
eggNOG:NOG255142 EMBL:AL050329 EMBL:AL354719 EMBL:AF091622
EMBL:D87685 EMBL:BX648268 EMBL:BC113650 EMBL:BC113652
IPI:IPI00170770 IPI:IPI00847550 RefSeq:NP_055968.1
UniGene:Hs.348921 PDB:2DME PDBsum:2DME ProteinModelPortal:Q92576
SMR:Q92576 IntAct:Q92576 STRING:Q92576 PhosphoSite:Q92576
DMDM:34098662 PaxDb:Q92576 PeptideAtlas:Q92576 PRIDE:Q92576
Ensembl:ENST00000262043 Ensembl:ENST00000393387 GeneID:23469
KEGG:hsa:23469 UCSC:uc003pen.2 CTD:23469 GeneCards:GC06P064403
HGNC:HGNC:8921 HPA:HPA024676 HPA:HPA025763 MIM:607789
neXtProt:NX_Q92576 PharmGKB:PA33261 HOVERGEN:HBG039623
InParanoid:Q92576 OMA:KQNMTTD PhylomeDB:Q92576 ChiTaRS:PHF3
EvolutionaryTrace:Q92576 GenomeRNAi:23469 NextBio:45797
ArrayExpress:Q92576 Bgee:Q92576 CleanEx:HS_PHF3
Genevestigator:Q92576 GermOnline:ENSG00000118482 Uniprot:Q92576
Length = 2039
Score = 174 (66.3 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 57/231 (24%), Positives = 108/231 (46%)
Query: 99 TIPGDTEPAKIEKVDKRTSEECQ--EISGVGIVKVQKVDQXXXXXXXXXXXXEIVETEET 156
T+ + K E + R S +C+ EI + ++K+ Q E + E T
Sbjct: 822 TVKHKVKILKRESGEGRNSSDCRDNEIKKWQLAPLRKMGQPVLPRRSSEEKSEKIPKEST 881
Query: 157 N--------SADNVNVGNSITEEGEASGII-LHKLSSSKIRCNDCFREVVREKVCDALSK 207
S + + ++ G++ +H +S+ D R+ VR + D L K
Sbjct: 882 TVTCTGEKASKPGTHEKQEMKKKKVEKGVLNVHPAASASKPSADQIRQSVRHSLKDILMK 941
Query: 208 VSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFR 267
+++ ++ +E A +VA +E +F + +D YK KYR+++ NLKDPKN
Sbjct: 942 RLTDSNLKVPEEKAA----KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILF 997
Query: 268 RKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEHTRKYMQR 318
+KVL G+V P+ ++ M+ +E+AS E+ + E+ + ++ R+ +R
Sbjct: 998 KKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERR 1048
>RGD|1304925 [details] [associations]
symbol:Phf3 "PHD finger protein 3" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
RGD:1304925 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:CH473965 GeneTree:ENSGT00530000063844 CTD:23469
IPI:IPI00366920 RefSeq:NP_001102261.1 UniGene:Rn.21075
Ensembl:ENSRNOT00000015638 GeneID:363210 KEGG:rno:363210
UCSC:RGD:1304925 OrthoDB:EOG4M91RC NextBio:682838 Uniprot:D3ZKI5
Length = 2020
Score = 172 (65.6 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 45/147 (30%), Positives = 83/147 (56%)
Query: 173 EASGIILHKLSSSKIRCN-DCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIA 231
E G +H +++ I+ + D R+ VR + D L K +++ +I +E +A +VA
Sbjct: 889 EKGGPNVHPPAAAAIKPSADQIRQSVRHSLKDILMKRLTDSNLKIPEEKSA----KVATK 944
Query: 232 LESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASD 291
+E +F + +D YK KYR+++ NLKDPKN +KVL G+V P+ ++ M+ +E+AS
Sbjct: 945 IEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASK 1004
Query: 292 EMLRSYQHEDEERARLWKEHTRKYMQR 318
E+ + E+ + ++ R+ +R
Sbjct: 1005 ELAAWRRRENRHTIEMIEKEQREVERR 1031
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 157 (60.3 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 195 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAV 254
+ VR K C + + + D + V A D ++ +E +F G +D YK + R+
Sbjct: 113 DAVRNK-CREMLTAALQTDHD-HMAVGA-DCEGLSAQIEECIFRDVGNTDMKYKNRVRSR 169
Query: 255 LGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ NLKD KNPD RR VL G + P+ + MT++EMASDE+
Sbjct: 170 ISNLKDAKNPDLRRNVLCGVITPQQIAVMTSEEMASDEL 208
>UNIPROTKB|F1SV96 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:CU861549 Ensembl:ENSSSCT00000004001 Uniprot:F1SV96
Length = 1168
Score = 166 (63.5 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 38/109 (34%), Positives = 68/109 (62%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVR-VAIALESAMFEKWGRSDGPYKIKYRAVL 255
VR V A+ +V +E+ D V + +V +A +E+A+F+ ++G Y+ KYR++L
Sbjct: 543 VRSTVVRAMREVLWSRLQELPDLVLSEGAVEGLAAGIEAALFDLTHATNGHYRTKYRSLL 602
Query: 256 GNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEER 304
NL+DP+NPD KV+ G V P+ +V M + ++A E+ R ++ ++E+R
Sbjct: 603 FNLRDPRNPDLFLKVIHGDVTPQGLVRMNSVQLAPQELAR-WRDQEEKR 650
>UNIPROTKB|E2R727 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 CTD:23469 OMA:KQNMTTD
EMBL:AAEX03008426 RefSeq:XP_538985.2 Ensembl:ENSCAFT00000003930
GeneID:481864 KEGG:cfa:481864 NextBio:20856589 Uniprot:E2R727
Length = 2043
Score = 168 (64.2 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 48/171 (28%), Positives = 90/171 (52%)
Query: 150 IVETEETNSADNVNVGNSITEEGEASGII-LHKLSSSKIRCN-DCFREVVREKVCDALSK 207
++ T E S + I ++ GI +H ++S + + D R+ VR + D L +
Sbjct: 884 VICTGEKGSKPGAHEKQEIKKKKSEKGIPNVHVPTTSTSKPSADQIRQSVRHSLKDILMR 943
Query: 208 VSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFR 267
E++ ++ +E A +VA +E +F + +D YK KYR+++ NLKDPKN
Sbjct: 944 RLTESNLKVPEEKAA----KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILF 999
Query: 268 RKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEHTRKYMQR 318
+KVL G+V P+ ++ M+ +E+AS E+ + E+ + ++ R+ +R
Sbjct: 1000 KKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERR 1050
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 155 (59.6 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 38/99 (38%), Positives = 56/99 (56%)
Query: 195 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAV 254
+ VR K C + + + D + + A D +A +E +F G +D YK + R+
Sbjct: 137 DAVRTK-CREMLTAALQTDHD-HVAIGA-DCECLAGQIEECIFRDVGNTDMKYKNRVRSR 193
Query: 255 LGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
L NLKD KNP RRKVL G + P+ + MT++EMASDE+
Sbjct: 194 LSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDEL 232
>UNIPROTKB|E2R336 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010923 "negative regulation of phosphatase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 Ensembl:ENSCAFT00000017200
Uniprot:E2R336
Length = 718
Score = 161 (61.7 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 39/109 (35%), Positives = 66/109 (60%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVR-VAIALESAMFEKWGRSDGPYKIKYRAVL 255
VR V A+ +V +E+ D V + ++V +A +E+A+F + YK KYR++L
Sbjct: 104 VRNTVVHAMQEVLRSRLQELPDLVLSEEAVEGIAAGIETALFNLTQTTSCRYKTKYRSLL 163
Query: 256 GNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEER 304
NL+DP+NPD KV+ G V PE +V M++ ++A E L ++ ++E+R
Sbjct: 164 FNLRDPRNPDLFLKVVRGDVTPEDLVQMSSIQLAPQE-LACWRDQEEKR 211
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 152 (58.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 47/153 (30%), Positives = 79/153 (51%)
Query: 154 EETNSADNVNVGNSITEEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSKVSGEAD 213
EE++S+ NV+ S +E A + + +D R RE + AL +G D
Sbjct: 105 EESSSSSNVS---SRKDETNARDTYVSSFPRAP-STSDSVRLKCREMLAAALR--TG--D 156
Query: 214 EEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFG 273
+ + + A D + +E A++++ +D YK + R+ + NLKD KNP+ R+ VL G
Sbjct: 157 DYVA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCG 213
Query: 274 QVKPETVVGMTAKEMASDEMLRSYQHEDEERAR 306
+ P+ MTA+EMASDE+ ++ +E R
Sbjct: 214 NIPPDLFARMTAEEMASDELKEMRKNLTKEAIR 246
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 151 (58.2 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 47/153 (30%), Positives = 79/153 (51%)
Query: 154 EETNSADNVNVGNSITEEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSKVSGEAD 213
EE++S+ NV+ S +E A + + +D R RE + AL +G D
Sbjct: 105 EESSSSGNVS---SRKDETNARDTYVSSFPRAP-STSDSVRLKCREMLAAALR--TG--D 156
Query: 214 EEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFG 273
+ + + A D + +E A++++ +D YK + R+ + NLKD KNP+ R+ VL G
Sbjct: 157 DYVA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCG 213
Query: 274 QVKPETVVGMTAKEMASDEMLRSYQHEDEERAR 306
+ P+ MTA+EMASDE+ ++ +E R
Sbjct: 214 NIPPDLFARMTAEEMASDELKEMRKNLTKEAIR 246
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 150 (57.9 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 36/100 (36%), Positives = 58/100 (58%)
Query: 195 EVVREKVCDALSKVSGEADEE-IRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRA 253
+ VR K C + ++ + D + + VN C+ ++ +E +F G +D YK + R+
Sbjct: 136 DAVRNK-CREMLTLALQTDHDHVAVGVN-CE--HLSSQIEECIFLDVGNTDMKYKNRVRS 191
Query: 254 VLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ NLKD KNP RR VL G + P+ + MT++EMASDE+
Sbjct: 192 RISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDEL 231
>UNIPROTKB|F1MIT2 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
IPI:IPI00689567 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:DAAA02038289 EMBL:DAAA02038290
Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2
Length = 280
Score = 149 (57.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 37/110 (33%), Positives = 60/110 (54%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLG 256
VR K + L+ D+ I + A D + +E A++++ +D YK + R+ +
Sbjct: 119 VRLKCREMLAAALRTGDDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS 175
Query: 257 NLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERAR 306
NLKD KNP+ R+ VL G + P+ MTA+EMASDE+ ++ +E R
Sbjct: 176 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIR 225
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 149 (57.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 37/110 (33%), Positives = 60/110 (54%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLG 256
VR K + L+ D+ I + A D + +E A++++ +D YK + R+ +
Sbjct: 140 VRLKCREMLAAALRTGDDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS 196
Query: 257 NLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERAR 306
NLKD KNP+ R+ VL G + P+ MTA+EMASDE+ ++ +E R
Sbjct: 197 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIR 246
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 149 (57.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 37/110 (33%), Positives = 60/110 (54%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLG 256
VR K + L+ D+ I + A D + +E A++++ +D YK + R+ +
Sbjct: 140 VRLKCREMLAAALRTGDDYIA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS 196
Query: 257 NLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERAR 306
NLKD KNP+ R+ VL G + P+ MTA+EMASDE+ ++ +E R
Sbjct: 197 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIR 246
>TAIR|locus:504954948 [details] [associations]
symbol:AT5G42325 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 EMBL:CP002688
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
KO:K03145 IPI:IPI00542827 RefSeq:NP_680377.1 UniGene:At.65714
ProteinModelPortal:F4K1I5 SMR:F4K1I5 PRIDE:F4K1I5
EnsemblPlants:AT5G42325.1 GeneID:834238 KEGG:ath:AT5G42325
OMA:SADMIMT PhylomeDB:F4K1I5 Uniprot:F4K1I5
Length = 233
Score = 145 (56.1 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 47/135 (34%), Positives = 72/135 (53%)
Query: 184 SSKIRCNDCFREVVREKVCDALSKVSGEA-DEEIRDEV-NACDSVRVAIALESAMFEKWG 241
S+ + D R+ V E + +L+KV+ E D E++ V CD VA+++ESAM
Sbjct: 107 STMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM----- 161
Query: 242 RSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHED 301
++L N+ D NPD RRKVL G++ E +V M EM S+++ + Q
Sbjct: 162 -----------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQRI- 209
Query: 302 EERARLWKEHTRKYM 316
+ERAR +KE +R M
Sbjct: 210 KERAR-FKEESRMKM 223
>UNIPROTKB|F1NP36 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:AADN02021697 EMBL:AADN02021698 IPI:IPI00598591
Ensembl:ENSGALT00000024655 ArrayExpress:F1NP36 Uniprot:F1NP36
Length = 309
Score = 149 (57.5 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 50/156 (32%), Positives = 77/156 (49%)
Query: 154 EETNSADNVNVGNSITEEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSKVSGEAD 213
EE++S+ N +S EEG A + S R + VR K + LS D
Sbjct: 109 EESSSSSN---SSSRKEEGSAPS---NSFIPSFPRAPST-SDSVRVKCREMLSAALRTGD 161
Query: 214 EEIRDEVNACDSVRVAIALESA---MFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKV 270
+ I + A D + +E A +F++ +D YK + R+ + NLKD KNP+ R+ V
Sbjct: 162 DYIA--IGA-DEEELGSQIEEAKAPIFQELKNTDMKYKNRVRSRIANLKDAKNPNLRKNV 218
Query: 271 LFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERAR 306
L G + P+ MTA+EMASDE+ ++ +E R
Sbjct: 219 LCGNIPPDKFAKMTAEEMASDELKEMRKNLTKEAIR 254
>UNIPROTKB|E1BVY1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:AADN02002654
EMBL:AADN02002655 IPI:IPI00602717 Ensembl:ENSGALT00000026230
Uniprot:E1BVY1
Length = 2050
Score = 167 (63.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 46/149 (30%), Positives = 80/149 (53%)
Query: 170 EEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVA 229
E+G S L + +SK D R V++ + + L K ++ +I +E A +VA
Sbjct: 898 EKGPTSATHLPNVPASKPSA-DQIRHSVKQSLKEILMKRLTDSSLKIPEERAA----KVA 952
Query: 230 IALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMA 289
+E +F + +D YK KYR+++ NLKDPKN +KVL G+V P+ ++ M+ +E+A
Sbjct: 953 TRIERELFSFFRDTDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIKMSPEELA 1012
Query: 290 SDEMLRSYQHEDEERARLWKEHTRKYMQR 318
S E+ Q E+ + ++ R+ +R
Sbjct: 1013 SKELAAWRQRENRHTIEMIEKEQREVERR 1041
Score = 37 (18.1 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 21/104 (20%), Positives = 43/104 (41%)
Query: 41 LNKSDITCPLLVSTQLVRYLLPLTEHPTKKIQDFASDLIVSWRDMFLEQIRDEKKG---- 96
++K TC L V T+ + +H K + + D +++ + D KKG
Sbjct: 793 MSKQGPTCNLNVGTEKGKQTEDTGKHKVKIFKRESGD----GKNLSESRDSDTKKGQHVP 848
Query: 97 ------SCTIPGDTEPAKIEKVDKRTSEECQEISGVGIVKVQKV 134
+ IP + K EK+ K + ++ + G+ + Q++
Sbjct: 849 ARKVSQTAVIPRRSSEEKGEKISKESLSVVEKSTKSGVHEKQEI 892
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 148 (57.2 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 36/110 (32%), Positives = 60/110 (54%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLG 256
VR K + L+ D+ + + A D + +E A++++ +D YK + R+ +
Sbjct: 140 VRLKCREMLAAALRTGDDYVA--IGA-DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS 196
Query: 257 NLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERAR 306
NLKD KNP+ R+ VL G + P+ MTA+EMASDE+ ++ +E R
Sbjct: 197 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIR 246
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 148 (57.2 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 33/99 (33%), Positives = 58/99 (58%)
Query: 195 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAV 254
+ VR K C + + +AD++ + A D +A +E +++ +D YK + R+
Sbjct: 165 DAVRNK-CREMLTTALQADDDYI-AIGA-DCEHIAAQIEECIYQDIKNTDMKYKNRVRSR 221
Query: 255 LGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ NLKD KNP+ ++ VL G + PE + MT++EMAS+E+
Sbjct: 222 ISNLKDSKNPELKKNVLCGAITPEQIAVMTSEEMASNEL 260
>UNIPROTKB|I3L6H4 [details] [associations]
symbol:I3L6H4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00390000017794
Ensembl:ENSSSCT00000029692 Uniprot:I3L6H4
Length = 111
Score = 129 (50.5 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 234 SAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
S ++++ +D Y+ + R+ + NLKDP+NP RR VL G + + MTA+EMASDE
Sbjct: 9 SHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDE- 67
Query: 294 LRSYQHEDEERARLWKEH 311
LR ++ + A +EH
Sbjct: 68 LRELRNAMTQEAI--REH 83
>UNIPROTKB|F1NP37 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AADN02021697 EMBL:AADN02021698
IPI:IPI00575645 Ensembl:ENSGALT00000024654 ArrayExpress:F1NP37
Uniprot:F1NP37
Length = 280
Score = 146 (56.5 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 48/153 (31%), Positives = 76/153 (49%)
Query: 154 EETNSADNVNVGNSITEEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSKVSGEAD 213
EE++S+ N +S EEG A + S R + VR K + LS D
Sbjct: 84 EESSSSSN---SSSRKEEGSAPS---NSFIPSFPRAPST-SDSVRVKCREMLSAALRTGD 136
Query: 214 EEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFG 273
+ I + A D + + + +F++ +D YK + R+ + NLKD KNP+ R+ VL G
Sbjct: 137 DYIA--IGA-DEEELE-TIHTPIFQELKNTDMKYKNRVRSRIANLKDAKNPNLRKNVLCG 192
Query: 274 QVKPETVVGMTAKEMASDEMLRSYQHEDEERAR 306
+ P+ MTA+EMASDE+ ++ +E R
Sbjct: 193 NIPPDKFAKMTAEEMASDELKEMRKNLTKEAIR 225
>UNIPROTKB|G5E5M1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:DAAA02024858
EMBL:DAAA02024859 UniGene:Bt.20639 Ensembl:ENSBTAT00000025476
NextBio:20873627 Uniprot:G5E5M1
Length = 2025
Score = 165 (63.1 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 46/150 (30%), Positives = 82/150 (54%)
Query: 169 TEEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRV 228
TE+G G+ + +SK D R+ VR + D L K +++ ++ +E A +V
Sbjct: 897 TEKG-LPGVHPPAVPASKPSA-DQIRQSVRHSLKDILMKRLTDSNLKVPEEKAA----KV 950
Query: 229 AIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEM 288
A +E +F + +D YK KYR+++ NLKDPKN +KVL G+V P+ ++ M+ +E+
Sbjct: 951 ATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEEL 1010
Query: 289 ASDEMLRSYQHEDEERARLWKEHTRKYMQR 318
AS E+ + E+ + ++ R+ +R
Sbjct: 1011 ASKELAAWRRRENRHTIEMIEKEQREVERR 1040
Score = 37 (18.1 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 100 IPGDTEPAKIEKVDKRTSEECQEI 123
IP + K E +D +S EC+ I
Sbjct: 680 IPDNIATVKREGLDHSSSFECKYI 703
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 146 (56.5 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 34/99 (34%), Positives = 56/99 (56%)
Query: 195 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAV 254
+ VR K C + ++ + D + +C+ ++ +E +F G +D YK + R+
Sbjct: 136 DAVRNK-CREMLTLALQTDHDHVAVGVSCE--HLSSQIEECIFLDVGNTDMKYKNRVRSR 192
Query: 255 LGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ NLKD KNP RR VL G + P+ + MT++EMASDE+
Sbjct: 193 ISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDEL 231
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 146 (56.5 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 34/99 (34%), Positives = 56/99 (56%)
Query: 195 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAV 254
+ VR K C + ++ + D + +C+ ++ +E +F G +D YK + R+
Sbjct: 136 DAVRNK-CREMLTLALQTDHDHVAVGVSCE--HLSSQIEECIFLDVGNTDMKYKNRVRSR 192
Query: 255 LGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ NLKD KNP RR VL G + P+ + MT++EMASDE+
Sbjct: 193 ISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDEL 231
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 146 (56.5 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 224 DSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGM 283
D + +E A++++ +D YK + R+ + NLKD KNP+ R+ VL G + P+ M
Sbjct: 163 DEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARM 222
Query: 284 TAKEMASDEMLRSYQHEDEERAR 306
TA+EMASDE+ ++ +E R
Sbjct: 223 TAEEMASDELKEMRKNLTKEAIR 245
>ZFIN|ZDB-GENE-090313-207 [details] [associations]
symbol:phf3 "PHD finger protein 3" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
ZFIN:ZDB-GENE-090313-207 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 EMBL:BX005106
IPI:IPI00486005 UniGene:Dr.75445 Ensembl:ENSDART00000043440
Ensembl:ENSDART00000100352 HOGENOM:HOG000213981 OMA:CENNDET
NextBio:20880263 Uniprot:B8A483
Length = 1691
Score = 156 (60.0 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 50/165 (30%), Positives = 81/165 (49%)
Query: 154 EETNSADNVNVGNSITEEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSKVSGEAD 213
E S D+ G ++ E + + + +SS K R VR+ + + L K S E+D
Sbjct: 719 ERRPSEDSAQKGPNVKHETKK--VKISPVSSKKPSTGH-IRRSVRDSLEEILLKRSKESD 775
Query: 214 EEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFG 273
+I + A VA E +F + D YK KYR++ NLKD KN ++VL G
Sbjct: 776 LKISSDRPA----EVARRTEKELFALFQGVDSKYKNKYRSLTFNLKDAKNNVLFKRVLKG 831
Query: 274 QVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEHTRKYMQR 318
+V P +V MTA+E+AS E+ + E+ + ++ R+ +R
Sbjct: 832 EVSPADLVRMTAEELASKELAAWRKRENRHTIEMIEKEQREVERR 876
>UNIPROTKB|H0YF46 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
SUPFAM:SSF46942 HGNC:HGNC:26338 ChiTaRS:SPOCD1
Ensembl:ENST00000528579 Uniprot:H0YF46
Length = 255
Score = 143 (55.4 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 32/91 (35%), Positives = 59/91 (64%)
Query: 215 EIRDEVNACDSVR-VAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFG 273
E+ D V + + V +A +E+A+++ ++G YK KYR++L NL+DP+N D KV+ G
Sbjct: 42 ELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHG 101
Query: 274 QVKPETVVGMTAKEMASDEMLRSYQHEDEER 304
V P +V M++ ++A E+ R ++ ++E+R
Sbjct: 102 DVTPYDLVRMSSMQLAPQELAR-WRDQEEKR 131
>UNIPROTKB|F1MG39 [details] [associations]
symbol:F1MG39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:DAAA02006249 EMBL:DAAA02006250 IPI:IPI00693396
Ensembl:ENSBTAT00000055584 Uniprot:F1MG39
Length = 1150
Score = 149 (57.5 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 28/77 (36%), Positives = 52/77 (67%)
Query: 228 VAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKE 287
+A +E+A+F ++G YK KYR++L NL+DP+NP+ KV+ G + P +V M++ +
Sbjct: 574 IAAGIEAALFNLTQATNGRYKTKYRSLLFNLRDPRNPELFLKVVHGDITPHGLVRMSSVQ 633
Query: 288 MASDEMLRSYQHEDEER 304
+A E+ R ++ ++E+R
Sbjct: 634 LAPQELAR-WRDQEEKR 649
>TAIR|locus:2050311 [details] [associations]
symbol:AT2G25640 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017890 Pfam:PF07500
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 EMBL:CP002685
GO:GO:0008270 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 IPI:IPI00531004
RefSeq:NP_180135.2 UniGene:At.38993 ProteinModelPortal:F4ISL5
SMR:F4ISL5 PRIDE:F4ISL5 EnsemblPlants:AT2G25640.1 GeneID:817105
KEGG:ath:AT2G25640 OMA:IGAMAND Uniprot:F4ISL5
Length = 745
Score = 146 (56.5 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 228 VAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKE 287
+A +E+ +F+ +G + YK K R++L NLKD NP R KV++G++ E + M+A+E
Sbjct: 319 LAFEIETELFKLFGGVNKKYKEKGRSLLFNLKDKSNPKLREKVMYGEIAAERLCSMSAEE 378
Query: 288 MASDEMLRSYQHEDEERARL 307
+AS E+ Q + EE A++
Sbjct: 379 LASKELAEWRQAKAEEMAQM 398
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 140 (54.3 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 39/104 (37%), Positives = 55/104 (52%)
Query: 191 DCFREVVREKVCDALSKVSGEADEEIRDEVNAC-DSVRVAIALESAMFEKWGRSDGPYKI 249
D R RE + AL K+ GE E C + +A LE A++ ++ +D YK
Sbjct: 151 DAVRIKCREMLATAL-KI-GEVPE-------GCGEPEEMAAELEDAIYSEFNNTDMKYKN 201
Query: 250 KYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ R+ + NLKDPKNP R + G V + + MT +EMASDEM
Sbjct: 202 RIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEM 245
>UNIPROTKB|Q6ZMY3 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IDA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 GO:GO:0010923
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
PROSITE:PS50917 EMBL:AK058077 EMBL:AK091016 EMBL:AK096192
EMBL:AK097227 EMBL:AK131447 EMBL:BC039870 EMBL:BC114430
IPI:IPI00478771 IPI:IPI00827924 IPI:IPI00845378 IPI:IPI00845481
IPI:IPI00845517 RefSeq:NP_653170.3 UniGene:Hs.62604
ProteinModelPortal:Q6ZMY3 SMR:Q6ZMY3 IntAct:Q6ZMY3 DMDM:74749560
PaxDb:Q6ZMY3 PRIDE:Q6ZMY3 Ensembl:ENST00000257100
Ensembl:ENST00000360482 Ensembl:ENST00000533231 GeneID:90853
KEGG:hsa:90853 UCSC:uc001bts.1 UCSC:uc001btu.3 UCSC:uc001btv.3
UCSC:uc001btw.1 CTD:90853 GeneCards:GC01M032256 H-InvDB:HIX0018138
HGNC:HGNC:26338 HPA:HPA031713 neXtProt:NX_Q6ZMY3
PharmGKB:PA134930231 eggNOG:NOG280980 InParanoid:Q6ZMY3 OMA:PKDTGSG
PhylomeDB:Q6ZMY3 ChiTaRS:SPOCD1 GenomeRNAi:90853 NextBio:77002
ArrayExpress:Q6ZMY3 Bgee:Q6ZMY3 CleanEx:HS_SPOCD1
Genevestigator:Q6ZMY3 Uniprot:Q6ZMY3
Length = 1216
Score = 148 (57.2 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 36/109 (33%), Positives = 66/109 (60%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVR-VAIALESAMFEKWGRSDGPYKIKYRAVL 255
VR V ++ +V E+ D V + + V +A +E+A+++ ++G YK KYR++L
Sbjct: 608 VRGTVVRSMQEVLWTRLRELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLL 667
Query: 256 GNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEER 304
NL+DP+N D KV+ G V P +V M++ ++A E+ R ++ ++E+R
Sbjct: 668 FNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQLAPQELAR-WRDQEEKR 715
>TAIR|locus:2179419 [details] [associations]
symbol:AT5G25520 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 EMBL:CP002688 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
IPI:IPI00526909 RefSeq:NP_974833.1 UniGene:At.43475
ProteinModelPortal:F4JWU1 SMR:F4JWU1 PRIDE:F4JWU1
EnsemblPlants:AT5G25520.2 GeneID:832627 KEGG:ath:AT5G25520
OMA:HEHEESP PhylomeDB:F4JWU1 Uniprot:F4JWU1
Length = 997
Score = 147 (56.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 36/103 (34%), Positives = 57/103 (55%)
Query: 205 LSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNP 264
L VS + E + D +A +E +F+ +G + YK K R++L NLKD NP
Sbjct: 342 LEPVSDFGENETQKSFE--DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNP 399
Query: 265 DFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARL 307
+ R V+ G++ PE + MTA+E+AS E+ + Q + EE A +
Sbjct: 400 ELRESVMSGKISPERLCNMTAEELASKELSQWRQAKAEEMAEM 442
>UNIPROTKB|E9PPM7 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 HGNC:HGNC:26338
ChiTaRS:SPOCD1 IPI:IPI00977290 ProteinModelPortal:E9PPM7 SMR:E9PPM7
Ensembl:ENST00000452755 ArrayExpress:E9PPM7 Bgee:E9PPM7
Uniprot:E9PPM7
Length = 639
Score = 143 (55.4 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 32/91 (35%), Positives = 59/91 (64%)
Query: 215 EIRDEVNACDSVR-VAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFG 273
E+ D V + + V +A +E+A+++ ++G YK KYR++L NL+DP+N D KV+ G
Sbjct: 63 ELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHG 122
Query: 274 QVKPETVVGMTAKEMASDEMLRSYQHEDEER 304
V P +V M++ ++A E+ R ++ ++E+R
Sbjct: 123 DVTPYDLVRMSSMQLAPQELAR-WRDQEEKR 152
>UNIPROTKB|G1K224 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005813 "centrosome" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:DAAA02036215
EMBL:DAAA02036214 Ensembl:ENSBTAT00000029107 Uniprot:G1K224
Length = 303
Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 243 SDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+D YK + R+ L NLKD KNP RRKVL G + P+ + MT++EMASDE+
Sbjct: 185 TDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDEL 235
>UNIPROTKB|F1NFF0 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:AADN02019222 EMBL:AADN02019223
IPI:IPI00821338 Ensembl:ENSGALT00000039659 ArrayExpress:F1NFF0
Uniprot:F1NFF0
Length = 2253
Score = 147 (56.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 39/122 (31%), Positives = 66/122 (54%)
Query: 174 ASGIILHKLSSSKIRC--NDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIA 231
ASG K+S+ I+ N R+ +R + + L K ++D+ + E + +VA+
Sbjct: 670 ASGSSQVKVSAIPIQSQPNSQIRQNIRRSLKEILWKRVNDSDDLVMTE---SEVGKVALN 726
Query: 232 LESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASD 291
+E MF + +D YK KYR+++ NLKDPKN +VL G++ +V M +E+ S
Sbjct: 727 IEKEMFNLFHVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPEELLSK 786
Query: 292 EM 293
E+
Sbjct: 787 EL 788
>UNIPROTKB|F1NGH5 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AADN02019222 EMBL:AADN02019223 IPI:IPI00577866
Ensembl:ENSGALT00000009066 ArrayExpress:F1NGH5 Uniprot:F1NGH5
Length = 2287
Score = 147 (56.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 39/122 (31%), Positives = 66/122 (54%)
Query: 174 ASGIILHKLSSSKIRC--NDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIA 231
ASG K+S+ I+ N R+ +R + + L K ++D+ + E + +VA+
Sbjct: 670 ASGSSQVKVSAIPIQSQPNSQIRQNIRRSLKEILWKRVNDSDDLVMTE---SEVGKVALN 726
Query: 232 LESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASD 291
+E MF + +D YK KYR+++ NLKDPKN +VL G++ +V M +E+ S
Sbjct: 727 IEKEMFNLFHVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPEELLSK 786
Query: 292 EM 293
E+
Sbjct: 787 EL 788
>ASPGD|ASPL0000075205 [details] [associations]
symbol:AN4861 species:162425 "Emericella nidulans"
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0001139 "core RNA
polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0000993 "RNA polymerase II core binding"
evidence=IEA] [GO:0001012 "RNA polymerase II regulatory region DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 EMBL:BN001303 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
HOGENOM:HOG000195015 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EnsemblFungi:CADANIAT00005544 Uniprot:C8V9V9
Length = 304
Score = 131 (51.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 229 AIALESAMFEKWG-RSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKE 287
A A+E+A ++ +G + PY+ K R++ NLK+ NP R +VL +V PE V MT +E
Sbjct: 172 AAAVEAAAYDAYGPETKEPYRTKIRSLFQNLKNKSNPTLRVRVLSNEVTPERFVKMTHEE 231
Query: 288 MASDEML---RSYQHEDEERA 305
+ SDE R Q E+ ++A
Sbjct: 232 LRSDEQREKDRKIQKENMDKA 252
Score = 41 (19.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 50 LLVSTQLVRYLLPLTEHPTKKIQDFASDLIVSWRD 84
LL ST++ + +H ++ +S+++ WR+
Sbjct: 45 LLRSTRVGIIVNKFKQHKAPEVARLSSEIVSKWRN 79
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 132 (51.5 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 195 EVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAV 254
+ VR K C + ++ + D + +C+ + I E + + G G YK + R+
Sbjct: 110 DAVRNK-CREMLTLALQTDHDHVAVGVSCEHLSSQIE-EYILLDLSGSQIG-YKNRVRSR 166
Query: 255 LGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ NLKD KNP RR VL G + P+ + MT++EMASDE+
Sbjct: 167 ISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDEL 205
>UNIPROTKB|F1LV22 [details] [associations]
symbol:F1LV22 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
GeneTree:ENSGT00390000017794 IPI:IPI00199082
Ensembl:ENSRNOT00000010872 Uniprot:F1LV22
Length = 280
Score = 126 (49.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 41/149 (27%), Positives = 73/149 (48%)
Query: 154 EETNSADNVNVGNSITEEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSKVSGEAD 213
EE+ S+ N++ T + + + S+ +D R RE + AL +G D
Sbjct: 93 EESCSSSNISTSKDETSTRDTYASSVPRAPST----SDSVRLKCRETLAAALR--TG--D 144
Query: 214 EEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFG 273
+ + + A D + +E A++++ +D YK R + N+KD KNP+ VL G
Sbjct: 145 DYVA--IGA-DEEELGSQIEEAIYKEIRNTDKKYKSPERTRISNIKDAKNPN---NVLCG 198
Query: 274 QVKPETVVGMTAKEMASDEMLRSYQHEDE 302
++ P+ M A+EMASDE+ + + D+
Sbjct: 199 KISPDLFARMRAEEMASDELKKDKEKPDQ 227
>ZFIN|ZDB-GENE-030131-6117 [details] [associations]
symbol:dido1 "death inducer-obliterator 1"
species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 ZFIN:ZDB-GENE-030131-6117 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:BX296530 EMBL:BX005175
IPI:IPI00971682 Ensembl:ENSDART00000110882 ArrayExpress:F1QQA3
Bgee:F1QQA3 Uniprot:F1QQA3
Length = 2779
Score = 147 (56.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 36/116 (31%), Positives = 62/116 (53%)
Query: 190 NDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKI 249
N+ R +R + D L K ++D+ E N R+A+ +E MF +D YK
Sbjct: 758 NNQMRSNIRRSLTDILYKRVSDSDDLTMSE-NEVG--RLAVGIEKEMFNLCMNTDNKYKN 814
Query: 250 KYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERA 305
KYR+++ NLKDPKN +V+ G++ P +V ++ +E+ S E+ + E E++
Sbjct: 815 KYRSLMFNLKDPKNKGLFYRVVGGEISPFRLVRLSPEELLSKELSDWRKSESSEKS 870
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 88 EQIRDEKKGSCTIPGDTEPAKIEKVDKRTSEEC 120
E+++D+++G D K+E DK C
Sbjct: 34 EEVKDQEQG------DVSEDKVEDPDKSLKPAC 60
>UNIPROTKB|E1BCR2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:DAAA02036239 IPI:IPI00971510 RefSeq:XP_003586878.1
UniGene:Bt.14503 Ensembl:ENSBTAT00000007879 GeneID:519826
KEGG:bta:519826 Uniprot:E1BCR2
Length = 2196
Score = 135 (52.6 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 42/140 (30%), Positives = 72/140 (51%)
Query: 179 LHKLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFE 238
L +S + + N R+ +R + + L K ++D+ I E N ++A+ +E MF
Sbjct: 658 LGPVSPASSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTE-NEVG--KIALLIEKEMFN 714
Query: 239 KWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEML---- 294
+ +D YK KYR+++ NLKDPKN +VL ++ +V M +E+ S E+
Sbjct: 715 LFRVTDNRYKSKYRSLMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSVWRE 774
Query: 295 RSYQHEDEERARLWKEHTRK 314
R+ + E R +L E T+K
Sbjct: 775 RTTKPVMESRTKLHNE-TKK 793
>UNIPROTKB|E1BRR3 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
CTD:170082 OMA:LKKKAKC EMBL:AADN02011353 IPI:IPI00596200
RefSeq:XP_416834.1 UniGene:Gga.12219 ProteinModelPortal:E1BRR3
Ensembl:ENSGALT00000026765 GeneID:418636 KEGG:gga:418636
NextBio:20821792 Uniprot:E1BRR3
Length = 359
Score = 124 (48.7 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 59/264 (22%), Positives = 113/264 (42%)
Query: 36 DALDQLNKSDITCPLLVSTQLVRYLLPLTEH-PTKKIQDFASDLIVSWRDMF----LEQI 90
D L +L +T L T++ + + + + P+ +++ A L+ W+ ++ L+ +
Sbjct: 28 DHLKELEDVSMTVEYLQGTEVAKVVYRILKSCPSAELKKKAKQLLSRWKALYKNNRLQSV 87
Query: 91 RDEKKGSCTIPGDTEPAKIEKVDKRTSEECQEISGVGIVKVQKVDQXXXXXXXXXXXXEI 150
+ +K S + TE +I + CQ+ + +D
Sbjct: 88 QVKKSVSVCVSEATEHLEIPGEQLLSEGPCQQ---------EVLD---AVPSKILVPPRT 135
Query: 151 VETEETNSADNVNVGNSITEEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSK-VS 209
V+ +N+AD S EEG L + D R +R K D L K ++
Sbjct: 136 VKKVASNNADGSRDQLSPFEEGHTDNEGSKPLVNEAGSQQDHMR-ALRCKCTDLLYKALT 194
Query: 210 GEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRK 269
G A + ++E + + ++ +E +F ++D YK R+ + NLK+PK+ + +
Sbjct: 195 GSAKD--KEETDKW--LELSKEIEEHVFALHCKNDKKYKNCIRSKISNLKNPKSCNLKHN 250
Query: 270 VLFGQVKPETVVGMTAKEMASDEM 293
+ G + P+ MT EMASDE+
Sbjct: 251 LFSGTLSPKAFAEMTVMEMASDEL 274
>UNIPROTKB|Q9BTC0 [details] [associations]
symbol:DIDO1 "Death-inducer obliterator 1" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0005737 EMBL:CH471077 GO:GO:0006915 Reactome:REACT_115566
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Reactome:REACT_111183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL035669 EMBL:AY481571 EMBL:AY481572 EMBL:AB002331
EMBL:AK002127 EMBL:AL117379 EMBL:BC000770 EMBL:BC004237
EMBL:BC012757 EMBL:BC014489 EMBL:BC137177 EMBL:AL133063
IPI:IPI00183350 IPI:IPI00249982 IPI:IPI00249984 IPI:IPI00619921
RefSeq:NP_001180298.1 RefSeq:NP_001180299.1 RefSeq:NP_071388.2
RefSeq:NP_149072.2 RefSeq:NP_542986.1 RefSeq:NP_542987.2
UniGene:Hs.517172 ProteinModelPortal:Q9BTC0 SMR:Q9BTC0
IntAct:Q9BTC0 STRING:Q9BTC0 PhosphoSite:Q9BTC0 DMDM:116241332
PaxDb:Q9BTC0 PeptideAtlas:Q9BTC0 PRIDE:Q9BTC0 DNASU:11083
Ensembl:ENST00000266070 Ensembl:ENST00000266071
Ensembl:ENST00000354665 Ensembl:ENST00000370366
Ensembl:ENST00000370368 Ensembl:ENST00000370371
Ensembl:ENST00000395335 Ensembl:ENST00000395340
Ensembl:ENST00000395343 GeneID:11083 KEGG:hsa:11083 UCSC:uc002ydr.2
UCSC:uc002ydt.2 UCSC:uc002ydv.2 UCSC:uc011aao.1 CTD:11083
GeneCards:GC20M061510 HGNC:HGNC:2680 HPA:CAB004374 MIM:604140
neXtProt:NX_Q9BTC0 PharmGKB:PA27147 eggNOG:NOG255142
HOVERGEN:HBG060199 InParanoid:Q9BTC0 OMA:PNRMCAD OrthoDB:EOG41ZFCM
ChiTaRS:DIDO1 GenomeRNAi:11083 NextBio:42138 Bgee:Q9BTC0
Genevestigator:Q9BTC0 GermOnline:ENSG00000101191 Uniprot:Q9BTC0
Length = 2240
Score = 132 (51.5 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 34/115 (29%), Positives = 62/115 (53%)
Query: 179 LHKLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFE 238
L +S++ + N R+ +R + + L K ++D+ I E N ++A+ +E MF
Sbjct: 656 LGAMSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTE-NEVG--KIALHIEKEMFN 712
Query: 239 KWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ +D YK KYR+++ NLKDPKN +VL ++ +V + +E+ S E+
Sbjct: 713 LFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKEL 767
>TAIR|locus:2144211 [details] [associations]
symbol:AT5G11430 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
EMBL:CP002688 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 UniGene:At.69010
IPI:IPI00547412 RefSeq:NP_196704.2 UniGene:At.5125 UniGene:At.73156
ProteinModelPortal:F4JXV3 SMR:F4JXV3 PRIDE:F4JXV3
EnsemblPlants:AT5G11430.1 GeneID:831014 KEGG:ath:AT5G11430
OMA:VITQENT Uniprot:F4JXV3
Length = 873
Score = 127 (49.8 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 27/84 (32%), Positives = 51/84 (60%)
Query: 224 DSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGM 283
D +A +E +++ +G + Y+ + R++L NLKD NP+ R +V+ ++ E + M
Sbjct: 260 DPKLLASKIEMELYKLFGGVNKKYRERGRSLLFNLKDKNNPELRERVMSEEISAERLCSM 319
Query: 284 TAKEMASDEMLRSYQHEDEERARL 307
TA+E+AS E+ + Q + EE A++
Sbjct: 320 TAEELASKELSQWRQAKAEEMAKM 343
>UNIPROTKB|F1LWI4 [details] [associations]
symbol:F1LWI4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 IPI:IPI00781224
Ensembl:ENSRNOT00000056304 Uniprot:F1LWI4
Length = 190
Score = 111 (44.1 bits), Expect = 0.00021, P = 0.00021
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 224 DSVR-VAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNP--DFRRKVLFGQVKPETV 280
D V +A +E+A+F ++ YK KYR +L NL+DP+NP D KV V P+ +
Sbjct: 14 DEVEGIAEGIEAALFHLTQDTNLRYKSKYRNLLFNLRDPRNPPQDLFLKVAHCDVTPKDL 73
Query: 281 VGMTAKEMASDEMLRSYQHEDEERAR 306
V M++ ++A E+ R D+E+ R
Sbjct: 74 VQMSSIQLAPKELSR---WRDQEKRR 96
>FB|FBgn0082831 [details] [associations]
symbol:pps "protein partner of snf" species:7227 "Drosophila
melanogaster" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR006576 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 Pfam:PF07533 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00592 EMBL:AE014297
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 GO:GO:0016817 RefSeq:NP_650193.1
ProteinModelPortal:Q9VG78 SMR:Q9VG78 IntAct:Q9VG78 MINT:MINT-985343
STRING:Q9VG78 PRIDE:Q9VG78 EnsemblMetazoa:FBtr0082586 GeneID:41524
KEGG:dme:Dmel_CG6525 UCSC:CG6525-RA CTD:41524 FlyBase:FBgn0082831
InParanoid:Q9VG78 OrthoDB:EOG4CRJDW PhylomeDB:Q9VG78
GenomeRNAi:41524 NextBio:824247 ArrayExpress:Q9VG78 Bgee:Q9VG78
Uniprot:Q9VG78
Length = 2016
Score = 129 (50.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 232 LESAMFEKWGRSDGP-YKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMAS 290
+E MF +GR G YK KYR+++ N+KD KN K+ QV+P +V MT +++AS
Sbjct: 1320 VELEMFNSFGRDVGAKYKAKYRSLMFNIKDRKNRTLFEKICAKQVEPRQLVRMTPEQLAS 1379
Query: 291 DEMLRSYQHEDEERARL 307
E+ + E+E R +L
Sbjct: 1380 QELAK--WREEENRHQL 1394
Score = 43 (20.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 168 ITEEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSKV 208
+ + A ++ + + K + D F +V+R+ D +SKV
Sbjct: 1104 LPQNAGAQSLLNNSFDAKKNKKKDLFEDVLRQ--ADTVSKV 1142
>UNIPROTKB|F1PLS2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AAEX03014133 Ensembl:ENSCAFT00000020204 Uniprot:F1PLS2
Length = 1518
Score = 131 (51.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 32/104 (30%), Positives = 56/104 (53%)
Query: 190 NDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKI 249
N R+ +R + + L K ++D+ I E + ++A+ +E MF + +D YK
Sbjct: 676 NSQIRQNIRRSLKEILWKRVNDSDDLIMTE---SEVGKIALHIEKEMFNLFQVTDNRYKS 732
Query: 250 KYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
KYR+++ NLKDPKN +VL ++ +V M +E+ S E+
Sbjct: 733 KYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKEL 776
Score = 38 (18.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 91 RDEKKGSCTIPGDTEPAKIEKVDKRTSEE 119
R K + ++ +EPA D T+ E
Sbjct: 99 RGRKNAAVSLEDSSEPASCPVTDVETASE 127
>POMBASE|SPAC20H4.03c [details] [associations]
symbol:tfs1 "transcription elongation factor TFIIS"
species:4896 "Schizosaccharomyces pombe" [GO:0000991 "core RNA
polymerase II binding transcription factor activity" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 PomBase:SPAC20H4.03c
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
GO:GO:0000991 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006379
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EMBL:U20526 PIR:S63845 RefSeq:NP_593623.1 ProteinModelPortal:P49373
SMR:P49373 STRING:P49373 EnsemblFungi:SPAC20H4.03c.1 GeneID:2541941
KEGG:spo:SPAC20H4.03c OrthoDB:EOG4CC79J NextBio:20803025
Uniprot:P49373
Length = 293
Score = 96 (38.9 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 241 GRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDE 292
G++ Y+ + R++ NLKD NP R VL ++ P+ + MT+ E+AS++
Sbjct: 173 GKTGSEYRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSAELASED 224
Score = 58 (25.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 23/94 (24%), Positives = 45/94 (47%)
Query: 35 IDALDQL-NKSDITCPLLVSTQLVRYLLPLTEHPTKKIQDFASDLIVSWRDMFLEQIRDE 93
I+ + +L N+ T LL T+L + L HP +K+ + A +++ W+ + + R
Sbjct: 26 INIMTRLKNEVVATEELLKETRLGLVVGKLRSHPNEKVGEQAREIVKKWK-ADVSKGRPL 84
Query: 94 KKGSCTIPGDTEPAKIEKVDKRTSEECQEISGVG 127
K + T + P+K V + ++ Q+ S G
Sbjct: 85 KTTTTT---SSTPSKHADVGSQAQKQVQKQSSSG 115
>CGD|CAL0002729 [details] [associations]
symbol:orf19.4537 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0001139 "core RNA polymerase II
recruiting transcription factor activity" evidence=IEA] [GO:0000993
"RNA polymerase II core binding" evidence=IEA] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 CGD:CAL0002729 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
KO:K03145 TIGRFAMs:TIGR01385 EMBL:AACQ01000143 EMBL:AACQ01000140
RefSeq:XP_712868.1 RefSeq:XP_712962.1 ProteinModelPortal:Q59T94
SMR:Q59T94 STRING:Q59T94 GeneID:3645430 GeneID:3645524
KEGG:cal:CaO19.12012 KEGG:cal:CaO19.4537 Uniprot:Q59T94
Length = 305
Score = 108 (43.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 20/74 (27%), Positives = 44/74 (59%)
Query: 226 VRVAIALESAMFE-KWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMT 284
+R+AI +E+ +++ ++ + Y+ + R+ NL++ KNP+ R ++L Q+ P + MT
Sbjct: 169 LRIAIEIEAEVYKSEYSKVSDSYRNRLRSFTMNLRNKKNPELRERILSKQILPAAFIKMT 228
Query: 285 AKEMASDEMLRSYQ 298
EMA + + + +
Sbjct: 229 PNEMAPEALKKEIE 242
Score = 42 (19.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 66 HPTKKIQDFASDLIVSWRDMFLEQIRDEKK 95
H + +I +I +WRD + ++KK
Sbjct: 55 HDSAEINGLVKKMIRNWRDAVQAEKNNKKK 84
>MGI|MGI:1344352 [details] [associations]
symbol:Dido1 "death inducer-obliterator 1" species:10090
"Mus musculus" [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 MGI:MGI:1344352 GO:GO:0005737
GO:GO:0006915 GO:GO:0005654 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 eggNOG:NOG255142 HOVERGEN:HBG060199
OMA:PNRMCAD EMBL:AJ238332 EMBL:AY425951 EMBL:AY425952 EMBL:AK129117
EMBL:AK032843 EMBL:AK042474 EMBL:AK044919 EMBL:AL732560
EMBL:BC029110 EMBL:BC044755 EMBL:BC096662 EMBL:BC138712
EMBL:BC138713 IPI:IPI00227469 IPI:IPI00453851 IPI:IPI00828403
RefSeq:NP_035935.2 RefSeq:NP_780760.2 RefSeq:NP_808520.2
UniGene:Mm.253836 UniGene:Mm.490825 PDB:1WEM PDBsum:1WEM
ProteinModelPortal:Q8C9B9 SMR:Q8C9B9 STRING:Q8C9B9
PhosphoSite:Q8C9B9 PaxDb:Q8C9B9 PRIDE:Q8C9B9
Ensembl:ENSMUST00000037764 Ensembl:ENSMUST00000087517
Ensembl:ENSMUST00000103055 Ensembl:ENSMUST00000103056
Ensembl:ENSMUST00000103057 Ensembl:ENSMUST00000130986 GeneID:23856
KEGG:mmu:23856 UCSC:uc008ojq.1 UCSC:uc008ojr.1 UCSC:uc008oju.1
GeneTree:ENSGT00530000063844 InParanoid:Q8C9B9
EvolutionaryTrace:Q8C9B9 NextBio:303557 Bgee:Q8C9B9
CleanEx:MM_DIDO1 CleanEx:MM_DIO1 Genevestigator:Q8C9B9
Uniprot:Q8C9B9
Length = 2256
Score = 132 (51.5 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 35/115 (30%), Positives = 61/115 (53%)
Query: 179 LHKLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFE 238
L +S + + N R+ +R + + L K ++D+ I E N ++A+ +E MF
Sbjct: 653 LGPVSPAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTE-NEVG--KIALHIEKEMFN 709
Query: 239 KWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ +D YK KYR+++ NLKDPKN +VL ++ +V M +E+ S E+
Sbjct: 710 LFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKEL 764
Score = 37 (18.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 295 RSYQHE-DEERARLWKEH 311
R++ E D ER+R W H
Sbjct: 2139 RNWSRERDWERSRDWDRH 2156
>UNIPROTKB|F1M109 [details] [associations]
symbol:F1M109 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 IPI:IPI00366810 Ensembl:ENSRNOT00000031410
Uniprot:F1M109
Length = 330
Score = 111 (44.1 bits), Expect = 0.00097, P = 0.00097
Identities = 29/85 (34%), Positives = 51/85 (60%)
Query: 224 DSVR-VAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNP--DFRRKVLFGQVKPETV 280
D V +A +E+A+F ++ YK KYR +L NL+DP+NP D KV V P+ +
Sbjct: 16 DEVEGIAEGIEAALFHLTQDTNLRYKSKYRNLLFNLRDPRNPPQDLFLKVAHCDVTPKDL 75
Query: 281 VGMTAKEMASDEMLRSYQHEDEERA 305
V M++ ++A E+ R ++ +++ R+
Sbjct: 76 VQMSSIQLAPKELSR-WRDQEKRRS 99
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 319 293 0.00091 115 3 11 23 0.42 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 68
No. of states in DFA: 617 (66 KB)
Total size of DFA: 221 KB (2122 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.90u 0.11s 25.01t Elapsed: 00:00:01
Total cpu time: 24.91u 0.11s 25.02t Elapsed: 00:00:01
Start: Fri May 10 17:30:35 2013 End: Fri May 10 17:30:36 2013