BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020949
(319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLG 256
VR+K + LS + +A++ +D CD ++A +E ++++ +D Y+ + R+ +
Sbjct: 186 VRDKCVEMLS-AALKAEDNFKDYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRIS 242
Query: 257 NLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
NLKDP+NP RR VL G + PE + MTA+EMASDE+
Sbjct: 243 NLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDEL 279
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%)
Query: 224 DSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGM 283
D R++ +E +F G +D YK + R+ + NLKD KNPD RR VL G + P+ + M
Sbjct: 162 DCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVM 221
Query: 284 TAKEMASDEM 293
T++EMASDE+
Sbjct: 222 TSEEMASDEL 231
>sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
Length = 2039
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 176 GII-LHKLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALES 234
G++ +H +S+ D R+ VR + D L K +++ ++ +E A +VA +E
Sbjct: 909 GVLNVHPAASASKPSADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAA----KVATKIEK 964
Query: 235 AMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+F + +D YK KYR+++ NLKDPKN +KVL G+V P+ ++ M+ +E+AS E+
Sbjct: 965 ELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKEL 1023
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 228 VAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKE 287
+A +E +F G +D YK + R+ L NLKD KNP RRKVL G + P+ + MT++E
Sbjct: 167 LAGQIEECIFRDVGNTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEE 226
Query: 288 MASDEM 293
MASDE+
Sbjct: 227 MASDEL 232
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLG 256
VR+K + LS + +AD++ +D CD ++A +E ++++ +D Y+ + R+ +
Sbjct: 188 VRDKCVEMLS-AALKADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRIS 244
Query: 257 NLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
NLKDP+NP RR VL G + + MTA+EMASDE+
Sbjct: 245 NLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDEL 281
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLG 256
VR+K + LS + +AD++ +D CD ++A +E ++++ +D Y+ + R+ +
Sbjct: 187 VRDKCVEMLS-AALKADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRIS 243
Query: 257 NLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
NLKDP+NP RR VL G + + MTA+EMASDE+
Sbjct: 244 NLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDEL 280
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 128/294 (43%), Gaps = 67/294 (22%)
Query: 27 EKAWTAWCIDALDQLNKSDITCPLLVSTQLVRYLLPLTEHPT-KKIQDFASDLIVSWRDM 85
+K A +D L +L +T LL ST++ + + + T +++ A LI SW+ +
Sbjct: 17 QKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKL 76
Query: 86 F----LEQIRDEKKGSCTIPGDTEPAKIEKVDKRTSEECQEISGVGIVKVQKVDQNSTSS 141
E+ DEKK EPA + + S E +E S +S
Sbjct: 77 LDGPSTEKDLDEKK--------KEPA----ITSQNSPEAREES---------------TS 109
Query: 142 SSNVVRSEIVETEETNSADNVNVGNSITEEGEASGIILHKLSSSKIRCNDCFREVVREKV 201
S NV + +ETN+ D +S S S +++C RE++ +
Sbjct: 110 SGNVSNRK----DETNARDTY--VSSFPRAPSTS-------DSVRLKC----REMLAAAL 152
Query: 202 CDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDP 261
++ ADEE + +E A++++ +D YK + R+ + NLKD
Sbjct: 153 RTGDDYIAIGADEE-----------ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDA 201
Query: 262 KNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWKEHTRKY 315
KNP+ R+ VL G + P+ MTA+EMASDE+ E R L KE R++
Sbjct: 202 KNPNLRKNVLCGNIPPDLFARMTAEEMASDEL-------KEMRKNLTKEAIREH 248
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 232 LESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASD 291
+E A++++ +D YK + R+ + NLKD KNP+ R+ VL G + P+ MTA+EMASD
Sbjct: 172 IEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASD 231
Query: 292 EMLRSYQHEDEERARLWKEHTRKY 315
E+ E R L KE R++
Sbjct: 232 EL-------KEMRKNLTKEAIREH 248
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 232 LESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASD 291
+E A++++ +D YK + R+ + NLKD KNP+ R+ VL G + P+ MTA+EMASD
Sbjct: 172 IEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASD 231
Query: 292 EMLRSYQHEDEERARLWKEHTRKY 315
E+ E R L KE R++
Sbjct: 232 EL-------KEMRKNLTKEAIREH 248
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 232 LESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASD 291
+E A++++ +D YK + R+ + NLKD KNP+ R+ VL G + P+ MTA+EMASD
Sbjct: 172 IEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASD 231
Query: 292 EMLRSYQHEDEERARLWKEHTRKY 315
E+ E R L KE R++
Sbjct: 232 EL-------KEMRKNLTKEAIREH 248
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 232 LESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASD 291
+E +F G +D YK + R+ + NLKD KNP RR VL G + P+ + MT++EMASD
Sbjct: 170 IEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASD 229
Query: 292 EM 293
E+
Sbjct: 230 EL 231
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 232 LESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASD 291
+E +F G +D YK + R+ + NLKD KNP RR VL G + P+ + MT++EMASD
Sbjct: 170 IEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASD 229
Query: 292 EM 293
E+
Sbjct: 230 EL 231
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 228 VAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKE 287
+A LE A++ ++ +D YK + R+ + NLKDPKNP R + G V + + MT +E
Sbjct: 180 MAAELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEE 239
Query: 288 MASDEM 293
MASDEM
Sbjct: 240 MASDEM 245
>sp|Q6ZMY3|SPOC1_HUMAN SPOC domain-containing protein 1 OS=Homo sapiens GN=SPOCD1 PE=2
SV=1
Length = 1216
Score = 58.9 bits (141), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 197 VREKVCDALSKVSGEADEEIRDEVNACDSVR-VAIALESAMFEKWGRSDGPYKIKYRAVL 255
VR V ++ +V E+ D V + + V +A +E+A+++ ++G YK KYR++L
Sbjct: 608 VRGTVVRSMQEVLWTRLRELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLL 667
Query: 256 GNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERA 305
NL+DP+N D KV+ G V P +V M++ ++A E+ R ++ ++E+R
Sbjct: 668 FNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQLAPQELAR-WRDQEEKRG 716
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 179 LHKLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFE 238
L +S + + N R+ +R + + L K ++D+ I E ++A+ +E MF
Sbjct: 653 LGPVSPAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVG---KIALHIEKEMFN 709
Query: 239 KWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ +D YK KYR+++ NLKDPKN +VL ++ +V M +E+ S E+
Sbjct: 710 LFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKEL 764
>sp|Q6C0K9|BYE1_YARLI Transcription factor BYE1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=BYE1 PE=3 SV=1
Length = 822
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 228 VAIALESAMFEKWGRSD----GPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGM 283
+A+ +E +++ +G + Y+ K+R + NL+D KN R +V+ GQV P+T+V M
Sbjct: 237 LALTIEQELYDAYGTVEPEIGSNYRDKFRTLSFNLRDSKNETLRIRVMTGQVTPQTLVAM 296
Query: 284 TAKEMASDEM 293
+++EM + E+
Sbjct: 297 SSEEMMNPEL 306
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 179 LHKLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFE 238
L +S++ + N R+ +R + + L K ++D+ I E ++A+ +E MF
Sbjct: 656 LGAMSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVG---KIALHIEKEMFN 712
Query: 239 KWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+ +D YK KYR+++ NLKDPKN +VL ++ +V + +E+ S E+
Sbjct: 713 LFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKEL 767
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 87/224 (38%), Gaps = 52/224 (23%)
Query: 71 IQDFASDLIVSWRDMFLEQIRD---EKKGSCTIPGDTEPAKIEKVDKRTSEECQEISGVG 127
I +I SW+D + R ++ PG+ E DK T E
Sbjct: 61 ISKLVKKMISSWKDAINKNKRSRQAQQHHQDHAPGNAE-------DKTTVGES------- 106
Query: 128 IVKVQKVDQNSTSSSSNVVRSEIVETEETNSADNVNVGNSITEEGEASGIILHKLSSSKI 187
V V Q ++S S + + + V T+ NS + +G + I HKL
Sbjct: 107 ---VNGVQQPASSQSDAMKQDKYVSTKPRNSKN----------DGVDTAIYHHKL----- 148
Query: 188 RCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAM--FEKWGRSDG 245
R+ V + + D L+K S + I + A A+ES M ++
Sbjct: 149 ------RDQVLKALYDVLAKESEHPPQSI---------LHTAKAIESEMNKVNNCDTNEA 193
Query: 246 PYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMA 289
YK +YR + N+ NPD + K+ G + PE + AK++A
Sbjct: 194 AYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLA 237
>sp|Q9Y7V2|BYE1_SCHPO Transcription factor bye1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bye1 PE=3 SV=3
Length = 721
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 224 DSVRVAIALESAMFEKWGRS-------DGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVK 276
+S +A+ LE MF + + Y+ K+RA+ NL D KNP FR +VL ++
Sbjct: 248 NSTSLALQLEHIMFMVLSYTTDHSLTPNNKYREKFRALRFNLVDDKNPAFRARVLKNEIS 307
Query: 277 PETVVGMTAKEMASDEM 293
+V ++++EMA+ ++
Sbjct: 308 FNDLVNLSSEEMANPDL 324
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 241 GRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDE 292
G++ Y+ + R++ NLKD NP R VL ++ P+ + MT+ E+AS++
Sbjct: 173 GKTGSEYRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSAELASED 224
>sp|Q9GMV6|TEANC_MACFA Transcription elongation factor A N-terminal and central
domain-containing protein OS=Macaca fascicularis
GN=TCEANC PE=2 SV=1
Length = 350
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 232 LESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASD 291
+E +F + ++ YK R+ + NLK+PKN ++ +L G + P MT EMA+
Sbjct: 204 IEEHVFTLYSKNIKKYKTCIRSKVANLKNPKNSHLQQNLLSGTMSPREFAEMTVMEMANK 263
Query: 292 EM 293
E+
Sbjct: 264 EL 265
>sp|Q8N8B7|TEANC_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein OS=Homo sapiens GN=TCEANC PE=2
SV=2
Length = 351
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 232 LESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASD 291
+E +F + ++ YK R+ + NLK+P+N ++ +L G P MT EMA+
Sbjct: 205 IEEHVFTLYSKNIKKYKTCIRSKVANLKNPRNSHLQQNLLSGTTSPREFAEMTVMEMANK 264
Query: 292 EM 293
E+
Sbjct: 265 EL 266
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 224 DSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGM 283
D +A+ +E ++ ++ Y R+ + NL+D KN R VL G V+ E M
Sbjct: 171 DPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATM 230
Query: 284 TAKEMASDEM 293
T++EMAS E+
Sbjct: 231 TSEEMASAEI 240
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c
OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1
Length = 353
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 34 CIDALDQLNKSDITCPLLVSTQLVRYLLPLTEHPTKKIQDFASDLIVSWRDMFLEQIRDE 93
++ L L DIT L T + R++ + +HP+ ++ A L+ W++ E ++
Sbjct: 144 LVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVK-- 201
Query: 94 KKGSCTIPGDTEPAKIEKVDKRTSEEC------QEISGVGIVKVQKVDQNSTSSSSNVVR 147
PGD EP + + ++ Q++ G V + +S+S +SN+
Sbjct: 202 ----FNQPGDLEPPSLIADEDSPVQKALHNGSRQQVPDFGYSPVPQNGYSSSSKNSNITE 257
Query: 148 SE 149
E
Sbjct: 258 PE 259
>sp|Q6FJ00|BYE1_CANGA Transcription factor BYE1 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BYE1 PE=3
SV=1
Length = 607
Score = 38.5 bits (88), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 208 VSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKI-------KYRAVLGNLKD 260
V G ++ I DE A +ES +F RS YK K R + NLKD
Sbjct: 268 VKGHDEQSISDEF--------AEEMESKLFSHC-RSISNYKTLISVYTEKVRVLFSNLKD 318
Query: 261 PKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
PKN + V+ Q+ E +V M+A ++A+ ++
Sbjct: 319 PKNLSLKEAVINRQLDLEQLVSMSATDLANPDL 351
>sp|P36106|BYE1_YEAST Transcription factor BYE1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BYE1 PE=1 SV=1
Length = 594
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 240 WGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+G D Y K R++ NLKD KN + + V+ G++ +V M A E+A+ ++
Sbjct: 295 FGTLDKIYTEKVRSLYSNLKDKKNLELKAHVVEGKLPLNKLVNMNASELANPDL 348
>sp|A6ZZW1|BYE1_YEAS7 Transcription factor BYE1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=BYE1 PE=3 SV=1
Length = 594
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 240 WGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEM 293
+G D Y K R++ NLKD KN + + V+ G++ +V M A E+A+ ++
Sbjct: 295 FGTLDKIYTEKVRSLYSNLKDKKNLELKAHVVEGKLPLNKLVNMNASELANPDL 348
>sp|Q3US16|TEANC_MOUSE Transcription elongation factor A N-terminal and central
domain-containing protein OS=Mus musculus GN=Tceanc PE=2
SV=1
Length = 359
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 228 VAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKE 287
+A +E +F + YK R+ + NLK+P+N ++ L G + M+ +
Sbjct: 210 LAREIEEHIFTLHSNNIKKYKTSIRSKVANLKNPRNFHLQQNFLSGTMSAREFAEMSVLD 269
Query: 288 MASDEM 293
MAS E+
Sbjct: 270 MASQEL 275
>sp|Q7MF14|BETI_VIBVY HTH-type transcriptional regulator BetI OS=Vibrio vulnificus
(strain YJ016) GN=betI PE=3 SV=1
Length = 198
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 170 EEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNA-CDSVRV 228
E G +SGII H + R+++R+ CDA +++ + +NA D+ V
Sbjct: 38 EAGVSSGIINHYFGGKHGLLEETMRDILRQLSCDATKRLNSLPKQAHMQRINAILDANFV 97
Query: 229 AIALESAMFEKW 240
ES + + W
Sbjct: 98 GFQSESKVIKTW 109
>sp|P32252|RASB_DICDI Ras-like protein rasB OS=Dictyostelium discoideum GN=rasB PE=1 SV=1
Length = 197
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 124 SGVGIVKVQKVDQNSTSSSSNVVRSEIVETEETNSADNVNVGNSI-------TEEGEASG 176
+G G + V V ++ NVVR +I+ ++ + V VGN EGE S
Sbjct: 77 TGQGFLCVYDVTSRTSFEEINVVREQIIRVKDNDKVPIVLVGNKCDLENLREVTEGEGSE 136
Query: 177 I-------ILHKLSSSKIRCNDCFREVVRE 199
+ L + ++ ++CF EVVRE
Sbjct: 137 LAKSFSVPFLETSAKKRLNVDECFFEVVRE 166
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 228 VAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKE 287
+A+ +E+ M++ + YK K R+ NLK KN R +L Q+ M
Sbjct: 186 IAVEIEAEMYDIYRGVSKEYKEKLRSFKFNLK--KNDILRLSLLNRQISVAKFCSMDIYS 243
Query: 288 MASDEMLRSYQHEDEERARLWKEHTRKYM 316
MASD++ EER +L K +T M
Sbjct: 244 MASDDL-------KEERKKLDKFNTEASM 265
>sp|B5Y7Q7|GPMA_COPPD 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
OS=Coprothermobacter proteolyticus (strain ATCC 35245 /
DSM 5265 / BT) GN=gpmA PE=3 SV=1
Length = 248
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 58 RY-LLPLTEHPT-KKIQDFASDLIVSWRDMFLEQIRDEKKGSCTIPGDTEPAKIEKVDKR 115
RY L+P E P + ++D + ++ W DM + I++ KK + G++ A ++ +DK
Sbjct: 137 RYALVPEDELPLCESLKDTEARVVPYWADMIVPAIKEGKKVLISAHGNSMRAIVKYLDKM 196
Query: 116 TSEECQEIS-GVGIVKVQKVDQNSTSSSSNVVRSEIVETEETNSADNVNVGNSI 168
+ EE + + GI V ++D+ S +R + E+ A V N I
Sbjct: 197 SGEEIAKTNIPTGIPLVYELDE-----SMRPIRHYYLADEDFLKAKEQEVANQI 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,764,702
Number of Sequences: 539616
Number of extensions: 4388453
Number of successful extensions: 11223
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 11178
Number of HSP's gapped (non-prelim): 78
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)