Query 020949
Match_columns 319
No_of_seqs 189 out of 686
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:33:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pqv_S STP-alpha, transcriptio 100.0 2.4E-44 8.1E-49 342.4 23.1 250 2-309 3-255 (309)
2 2lw4_A Transcription elongatio 100.0 3.7E-34 1.3E-38 235.0 2.8 105 187-298 6-110 (113)
3 3ndq_A Transcription elongatio 100.0 3.6E-32 1.2E-36 221.5 6.7 99 187-292 10-108 (108)
4 2dme_A PHD finger protein 3; P 100.0 1.7E-32 6E-37 227.3 1.5 110 188-301 7-116 (120)
5 3po3_S Transcription elongatio 100.0 2E-30 6.9E-35 228.5 9.0 112 180-302 6-119 (178)
6 1wjt_A Transcription elongatio 99.7 3.4E-18 1.2E-22 137.8 5.4 79 1-89 10-89 (103)
7 2xpp_A IWS1, ECU08_0440; trans 97.7 1.6E-05 5.5E-10 67.4 2.9 56 33-88 83-140 (145)
8 3nfq_A Transcription factor IW 97.5 3.9E-05 1.3E-09 66.5 2.2 54 34-87 99-154 (170)
9 2b4j_C PC4 and SFRS1 interacti 96.3 0.0024 8.2E-08 50.4 3.2 79 1-87 4-84 (98)
10 1z9e_A PC4 and SFRS1 interacti 96.1 0.0036 1.2E-07 51.5 3.5 79 1-87 4-84 (127)
11 1nwd_B GAD, glutamate decarbox 33.1 28 0.00094 20.3 2.1 15 75-89 11-25 (28)
12 1kdx_A CBP; complex (transcrip 30.8 72 0.0025 23.8 4.7 65 190-258 11-75 (81)
13 2gut_A ARC/mediator, positive 29.5 53 0.0018 24.4 3.7 55 191-259 12-66 (77)
14 3e9v_A Protein BTG2; B-cell tr 28.9 41 0.0014 27.0 3.3 60 226-287 29-92 (120)
15 2z15_A Protein TOB1; human TOB 22.4 61 0.0021 26.3 3.2 60 226-287 33-96 (130)
No 1
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=100.00 E-value=2.4e-44 Score=342.39 Aligned_cols=250 Identities=18% Similarity=0.261 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhccChhhHhhHHHHHHHHHHh-hcCCCChhhhhcCCcceecccccCCCCHHHHHHHHHHHH
Q 020949 2 EKKVMQLCEEAKRGAEAAVMAEGEAEKAWTAWCIDALDQL-NKSDITCPLLVSTQLVRYLLPLTEHPTKKIQDFASDLIV 80 (319)
Q Consensus 2 e~~~~~l~~~a~k~~~~a~~~~~~~e~~~~~~~l~~L~~L-~~~~it~~lL~~T~iGk~V~~Lrkh~~~~I~~~Ak~Lv~ 80 (319)
|+||+++++...+ . ... .+.|+++|++| +.++||.++|++|+||++||+||+|++++|+.+|+.||.
T Consensus 3 ~~el~~~~~~L~k----~---~~~-----~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~ 70 (309)
T 1pqv_S 3 SKEVLVHVKNLEK----N---KSN-----DAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMIS 70 (309)
T ss_pred HHHHHHHHHHHhc----c---CCC-----HHHHHHHHHHHHhcCCCCHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7889999986666 1 222 34799999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCchhhhhhccccccccccccCCCCCCCCccccchhhhhhcccccC
Q 020949 81 SWRDMFLEQIRDEKKGSCTIPGDTEPAKIEKVDKRTSEECQEISGVGIVKVQKVDQNSTSSSSNVVRSEIVETEETNSAD 160 (319)
Q Consensus 81 ~WK~~v~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~i~~~~~~~~~ 160 (319)
+||++|..+...+...... ....+.....++++ .+ . +.. .++.. ++..+. ...
T Consensus 71 ~WK~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~---~--------~~~-~~~~~-~~~~~~--------~~~ 123 (309)
T 1pqv_S 71 SWKDAINKNKRSRQAQQHH-QDHAPGNAEDKTTV-----GE---S--------VNG-VQQPA-SSQSDA--------MKQ 123 (309)
T ss_pred HHHHHHHHhccCCcccccc-cccccccccCCCCC-----CC---C--------cCC-CCCCc-cccccc--------ccC
Confidence 9999998765432211100 00000000000000 00 0 000 00000 000000 000
Q ss_pred CcccCCCcccCCCCcccccccccCCCCCCChHHHHHHHHHHHHHHhhhhCCCchhhhhhhhccchHHHHHHHHHHHHHHh
Q 020949 161 NVNVGNSITEEGEASGIILHKLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKW 240 (319)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~lA~~IE~~lf~~~ 240 (319)
... ....++.+ ..+.+ ....++|.+|++||++|+++|.....+.+. ++..+|.+||.+||..|
T Consensus 124 ~~~----~~~~~~~~--~~~~~--~~~~~~d~~R~k~r~~L~~aL~~~~~~~~~---------~~~~~A~~IE~al~~~~ 186 (309)
T 1pqv_S 124 DKY----VSTKPRNS--KNDGV--DTAIYHHKLRDQVLKALYDVLAKESEHPPQ---------SILHTAKAIESEMNKVN 186 (309)
T ss_pred CCC----CCCCCCCC--CCCCC--CcCcCChHHHHHHHHHHHHHHhcCCCccch---------hHHHHHHHHHHHHHHHh
Confidence 000 00001111 11222 134788999999999999999865332221 35689999999999999
Q ss_pred cCCChh--hhhhhhhHhhccCCCCChhHHhhhhcCCcCccccccCChhhcCCHHHHHHHHHHHHHHHHHHH
Q 020949 241 GRSDGP--YKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDEERARLWK 309 (319)
Q Consensus 241 ~~~~~~--Yk~k~RSl~fNLKD~kNp~Lr~~Vl~G~I~p~~lv~Mt~eEMASdelk~e~~ki~e~r~~l~k 309 (319)
++++.+ |++++|||+|||||++||.||++||.|+|+|++||.||++||||+|+|++++++.+ ++|++
T Consensus 187 ~~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~i~p~~lv~Ms~eElasde~k~~~~~~~~--e~l~~ 255 (309)
T 1pqv_S 187 NCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAK--QNLYN 255 (309)
T ss_pred CCCchhHHHHHHHHHHHHHcCcCCChHHHHHHHcCCCCHHHHhcCCHHHhCCHHHHHHHHHHHH--HHHHH
Confidence 888877 99999999999999999999999999999999999999999999999996666666 55543
No 2
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.98 E-value=3.7e-34 Score=234.96 Aligned_cols=105 Identities=35% Similarity=0.519 Sum_probs=93.4
Q ss_pred CCCChHHHHHHHHHHHHHHhhhhCCCchhhhhhhhccchHHHHHHHHHHHHHHhcCCChhhhhhhhhHhhccCCCCChhH
Q 020949 187 IRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDF 266 (319)
Q Consensus 187 ~~t~d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~RSl~fNLKD~kNp~L 266 (319)
+.|+|++|++||++||+||... .+.. ...+++..+|.+||.++|..|++++.+|++++|||+|||||++||+|
T Consensus 6 p~t~D~vRdk~~e~L~~aL~~~-----~~~~--~~~~~~~~~A~~IE~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~Np~L 78 (113)
T 2lw4_A 6 PVTCDAVRNKCREMLTAALQTD-----HDHV--AIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDL 78 (113)
T ss_dssp CCCCSTTHHHHHHHHHHHHHSS-----THHH--HHTCCHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHCSSSSHH
T ss_pred CCCCcHHHHHHHHHHHHHHHcC-----CCcc--cccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHH
Confidence 5789999999999999999842 1211 12346789999999999999999999999999999999999999999
Q ss_pred HhhhhcCCcCccccccCChhhcCCHHHHHHHH
Q 020949 267 RRKVLFGQVKPETVVGMTAKEMASDEMLRSYQ 298 (319)
Q Consensus 267 r~~Vl~G~I~p~~lv~Mt~eEMASdelk~e~~ 298 (319)
|++||+|+|+|++||.||++||||+|+|++++
T Consensus 79 r~~vl~G~i~p~~l~~Ms~eEmAs~elk~~r~ 110 (113)
T 2lw4_A 79 RRNVLCGAITPQQIAVMTSEEMASDELKEIRK 110 (113)
T ss_dssp HHHHHTTSSCHHHHHHSCHHHHHCTTTTTCSS
T ss_pred HHHHHcCCCCHHHHhcCCHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999443
No 3
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=99.97 E-value=3.6e-32 Score=221.51 Aligned_cols=99 Identities=34% Similarity=0.509 Sum_probs=85.7
Q ss_pred CCCChHHHHHHHHHHHHHHhhhhCCCchhhhhhhhccchHHHHHHHHHHHHHHhcCCChhhhhhhhhHhhccCCCCChhH
Q 020949 187 IRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDF 266 (319)
Q Consensus 187 ~~t~d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~RSl~fNLKD~kNp~L 266 (319)
+.|+|++|++|+++||+||+... +... ..+++..+|.+||.+||..|+.++.+||+++|||+|||||++||+|
T Consensus 10 ~~t~d~vR~k~~~lL~~aL~~~~-----d~~~--~~~~~~~lA~~IE~~if~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~L 82 (108)
T 3ndq_A 10 PSTSDSVRLKCREMLAAALRTGD-----DYIA--IGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNL 82 (108)
T ss_dssp CCCCCHHHHHHHHHHHHHTTGGG-----HHHH--HTCCHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHTCTTCHHH
T ss_pred CCCCChHHHHHHHHHHHHHHcCC-----CCCc--ccccHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHHH
Confidence 57999999999999999998642 2221 2356789999999999999998889999999999999999999999
Q ss_pred HhhhhcCCcCccccccCChhhcCCHH
Q 020949 267 RRKVLFGQVKPETVVGMTAKEMASDE 292 (319)
Q Consensus 267 r~~Vl~G~I~p~~lv~Mt~eEMASde 292 (319)
|++||+|+|+|++||+||++||||+|
T Consensus 83 r~~vl~G~isp~~lv~Ms~eEmAS~E 108 (108)
T 3ndq_A 83 RKNVLCGNIPPDLFARMTAEEMASDE 108 (108)
T ss_dssp HHHHHHTSSCHHHHHHCCTTTC----
T ss_pred HHHHHcCCcCHHHHhCCCHHHccCCC
Confidence 99999999999999999999999997
No 4
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=1.7e-32 Score=227.28 Aligned_cols=110 Identities=32% Similarity=0.483 Sum_probs=96.2
Q ss_pred CCChHHHHHHHHHHHHHHhhhhCCCchhhhhhhhccchHHHHHHHHHHHHHHhcCCChhhhhhhhhHhhccCCCCChhHH
Q 020949 188 RCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLKDPKNPDFR 267 (319)
Q Consensus 188 ~t~d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~RSl~fNLKD~kNp~Lr 267 (319)
.++|.+|++|+++|+++|...+.+.+... ..+++..+|.+||.+||..|+.++.+|++++|||+|||||++||+||
T Consensus 7 ~~~d~~Rd~~r~~L~eaL~~~~~~~~~~~----~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr 82 (120)
T 2dme_A 7 GSADQIRQSVRHSLKDILMKRLTDSNLKV----PEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILF 82 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTTTCCC----CHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCCSHH
T ss_pred CCCchHHHHHHHHHHHHHHHhcccccccc----chhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45699999999999999998765433211 12345789999999999999988899999999999999999999999
Q ss_pred hhhhcCCcCccccccCChhhcCCHHHHHHHHHHH
Q 020949 268 RKVLFGQVKPETVVGMTAKEMASDEMLRSYQHED 301 (319)
Q Consensus 268 ~~Vl~G~I~p~~lv~Mt~eEMASdelk~e~~ki~ 301 (319)
++||+|+|+|++||.||++||||+|+|++++++.
T Consensus 83 ~~vl~G~i~p~~lv~Ms~eEmAS~elk~~r~~~~ 116 (120)
T 2dme_A 83 KKVLKGEVTPDHLIRMSPEELASKELAAWRRRSG 116 (120)
T ss_dssp HHHHHTSSCTTHHHHSCTTTTTTCCSTTTCTTCC
T ss_pred HHHHcCCCCHHHHhcCCHHHcCCHHHHHHHHHHh
Confidence 9999999999999999999999999999776653
No 5
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=99.96 E-value=2e-30 Score=228.54 Aligned_cols=112 Identities=23% Similarity=0.369 Sum_probs=91.8
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHHHhhhhCCCchhhhhhhhccchHHHHHHHHHHHHHHhcC-CCh-hhhhhhhhHhhc
Q 020949 180 HKLSSSKIRCNDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGR-SDG-PYKIKYRAVLGN 257 (319)
Q Consensus 180 ~~~~~~~~~t~d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~lA~~IE~~lf~~~~~-~~~-~Yk~k~RSl~fN 257 (319)
+++ +.+.++|++|++|+++||+||....++.+. ++..+|.+||.+||..|++ ++. +|++++|||+||
T Consensus 6 d~v--~~~~~~d~vRdk~~~lL~~aL~~~~~~~~~---------~~~~~A~~IE~~if~~~~~~~~~k~Yk~k~Rsl~~N 74 (178)
T 3po3_S 6 DGV--DTAIYHHKLRDQVLKALYDVLAKESEHPPQ---------SILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSN 74 (178)
T ss_dssp -----------CHHHHHHHHHHHHHTTSSSSCSTT---------HHHHHHHHHHHHHHHHTSCSSSSTHHHHHHHHHHHH
T ss_pred CCc--CcCcCCChHHHHHHHHHHHHHhcCCCCchh---------hHHHHHHHHHHHHHHHhcCCCchhhhhhhhhHHHHH
Confidence 444 446899999999999999999976554433 2458999999999999987 565 899999999999
Q ss_pred cCCCCChhHHhhhhcCCcCccccccCChhhcCCHHHHHHHHHHHH
Q 020949 258 LKDPKNPDFRRKVLFGQVKPETVVGMTAKEMASDEMLRSYQHEDE 302 (319)
Q Consensus 258 LKD~kNp~Lr~~Vl~G~I~p~~lv~Mt~eEMASdelk~e~~ki~e 302 (319)
|||++||+||++|++|+|+|.+||.|+++||||+|+|++++++.+
T Consensus 75 LKd~~N~~Lr~~vl~g~isp~~lv~Ms~eElas~elk~~~e~~~~ 119 (178)
T 3po3_S 75 VISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAK 119 (178)
T ss_dssp HHSSSCSHHHHHHHHCCCTTHHHHCCTTTTSSCSHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhcCCCCHHHHHhcCchhhCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999995555554
No 6
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=99.72 E-value=3.4e-18 Score=137.80 Aligned_cols=79 Identities=19% Similarity=0.381 Sum_probs=68.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHhccChhhHhhHHHHHHHHHHhhcCCCChhhhhcCCcceecccccCC-CCHHHHHHHHHHH
Q 020949 1 MEKKVMQLCEEAKRGAEAAVMAEGEAEKAWTAWCIDALDQLNKSDITCPLLVSTQLVRYLLPLTEH-PTKKIQDFASDLI 79 (319)
Q Consensus 1 ~e~~~~~l~~~a~k~~~~a~~~~~~~e~~~~~~~l~~L~~L~~~~it~~lL~~T~iGk~V~~Lrkh-~~~~I~~~Ak~Lv 79 (319)
+|.|++++++...++++ ..++ + .|+++|++|+.++||.++|++|+||++||+|||| ++++|+.+|+.||
T Consensus 10 ~e~ev~~i~k~L~k~~~----~~~~-~-----~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv 79 (103)
T 1wjt_A 10 LEEELLRIAKKLEKMVS----RKKT-E-----GALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLI 79 (103)
T ss_dssp SHHHHHHHHHHHHHHHH----TTCC-S-----SHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh----cCCH-H-----HHHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHH
Confidence 47899999996666544 2222 3 6999999999999999999999999999999998 8899999999999
Q ss_pred HHHHHHHHhh
Q 020949 80 VSWRDMFLEQ 89 (319)
Q Consensus 80 ~~WK~~v~~~ 89 (319)
.+||++|...
T Consensus 80 ~~WK~~v~~~ 89 (103)
T 1wjt_A 80 KNWKRLLDSP 89 (103)
T ss_dssp HHHHHHTCCS
T ss_pred HHHHHHHHHh
Confidence 9999999653
No 7
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=97.69 E-value=1.6e-05 Score=67.37 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=49.8
Q ss_pred HHHHHHHHhhcCCCChhhhhcCCcceecccccCCCC--HHHHHHHHHHHHHHHHHHHh
Q 020949 33 WCIDALDQLNKSDITCPLLVSTQLVRYLLPLTEHPT--KKIQDFASDLIVSWRDMFLE 88 (319)
Q Consensus 33 ~~l~~L~~L~~~~it~~lL~~T~iGk~V~~Lrkh~~--~~I~~~Ak~Lv~~WK~~v~~ 88 (319)
---.+|+.|..+||+.+.|.+++||++|..|.+|+. ++++.+|..||.+|..-+..
T Consensus 83 Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi~~ 140 (145)
T 2xpp_A 83 IRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVFK 140 (145)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHHhC
Confidence 344678888889999999999999999999999966 78999999999999998853
No 8
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=97.46 E-value=3.9e-05 Score=66.53 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCCCChhhhhcCCcceecccccCCCC--HHHHHHHHHHHHHHHHHHH
Q 020949 34 CIDALDQLNKSDITCPLLVSTQLVRYLLPLTEHPT--KKIQDFASDLIVSWRDMFL 87 (319)
Q Consensus 34 ~l~~L~~L~~~~it~~lL~~T~iGk~V~~Lrkh~~--~~I~~~Ak~Lv~~WK~~v~ 87 (319)
=-.+|+.|..+||+.+.|..++||++|..|.+|+. ++++.+|..||.+|-.-+.
T Consensus 99 r~~lL~~L~~lPI~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRpI~ 154 (170)
T 3nfq_A 99 QKSLFAALNDLPVKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPII 154 (170)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHCCCCHHHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHHHHh
Confidence 34677888889999999999999999999999966 8899999999999977663
No 9
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=96.29 E-value=0.0024 Score=50.42 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=62.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHhccChhhHhhHHHHHHHHHHhhcCCCChh-hhhcCCcceecccccCC-CCHHHHHHHHHH
Q 020949 1 MEKKVMQLCEEAKRGAEAAVMAEGEAEKAWTAWCIDALDQLNKSDITCP-LLVSTQLVRYLLPLTEH-PTKKIQDFASDL 78 (319)
Q Consensus 1 ~e~~~~~l~~~a~k~~~~a~~~~~~~e~~~~~~~l~~L~~L~~~~it~~-lL~~T~iGk~V~~Lrkh-~~~~I~~~Ak~L 78 (319)
||..|++|.-.-+-++... -+. +.+|+++|.+|+++++|.- +++.+.+--++.+||+. .+..|.+.|..|
T Consensus 4 ~E~~l~~L~~~ik~~L~~~-----~~D---v~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~g~q~Ir~kA~~i 75 (98)
T 2b4j_C 4 MDSRLQRIHAEIKNSLKID-----NLD---VNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTML 75 (98)
T ss_dssp HHHHHHHHHHHHHHHTCTT-----SCC---HHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC-----CCC---HHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 5788899887555444331 224 7789999999999999986 55577888899999887 568899999999
Q ss_pred HHHHHHHHH
Q 020949 79 IVSWRDMFL 87 (319)
Q Consensus 79 v~~WK~~v~ 87 (319)
..+.|.++.
T Consensus 76 Y~kfK~~f~ 84 (98)
T 2b4j_C 76 YNKFKNMFL 84 (98)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 999999984
No 10
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=96.09 E-value=0.0036 Score=51.51 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHhccChhhHhhHHHHHHHHHHhhcCCCChh-hhhcCCcceecccccCC-CCHHHHHHHHHH
Q 020949 1 MEKKVMQLCEEAKRGAEAAVMAEGEAEKAWTAWCIDALDQLNKSDITCP-LLVSTQLVRYLLPLTEH-PTKKIQDFASDL 78 (319)
Q Consensus 1 ~e~~~~~l~~~a~k~~~~a~~~~~~~e~~~~~~~l~~L~~L~~~~it~~-lL~~T~iGk~V~~Lrkh-~~~~I~~~Ak~L 78 (319)
||..|++|.-.-+-++... . +. +.+|+++|..|.++++|.- +++.+.|--++.+||+. .+..|.+.|..|
T Consensus 4 ~E~~L~~L~~~Ik~~L~v~--~---~D---v~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gnq~Ir~kA~~i 75 (127)
T 1z9e_A 4 MDSRLQRIHAEIKNSLKID--N---LD---VNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTML 75 (127)
T ss_dssp HHHHHHHHHHHHHHHTCGG--G---CC---HHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC--C---CC---HHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5788888887555444331 2 24 7789999999999999986 55578888899999887 557899999999
Q ss_pred HHHHHHHHH
Q 020949 79 IVSWRDMFL 87 (319)
Q Consensus 79 v~~WK~~v~ 87 (319)
..+.|.++.
T Consensus 76 Y~kFK~lf~ 84 (127)
T 1z9e_A 76 YNKFKNMFL 84 (127)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999995
No 11
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=33.12 E-value=28 Score=20.31 Aligned_cols=15 Identities=20% Similarity=0.660 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhh
Q 020949 75 ASDLIVSWRDMFLEQ 89 (319)
Q Consensus 75 Ak~Lv~~WK~~v~~~ 89 (319)
--.+|..||++|...
T Consensus 11 qlemitawkkfveek 25 (28)
T 1nwd_B 11 QLEMITAWKKFVEEK 25 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 357899999999754
No 12
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=30.82 E-value=72 Score=23.84 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHHHhhhhCCCchhhhhhhhccchHHHHHHHHHHHHHHhcCCChhhhhhhhhHhhcc
Q 020949 190 NDCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNL 258 (319)
Q Consensus 190 ~d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~RSl~fNL 258 (319)
...+|+..++.|..++.... .+..+.+ ..-.+....|..||..+|+...+ -.+|-..+.-.++++
T Consensus 11 t~~lR~hlv~Klv~aI~P~p--dp~a~~d-~rm~~l~~yArkvE~~~ye~A~s-rdeYY~llA~kiyki 75 (81)
T 1kdx_A 11 TQDLRSHLVHKLVQAIFPTP--DPAALKD-RRMENLVAYAKKVEGDMYESANS-RDEYYHLLAEKIYKI 75 (81)
T ss_dssp CHHHHHHHHHHHHHHHSCCS--SGGGGGS-HHHHHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCC--Chhhhhh-HHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHH
Confidence 37899999999999997532 1222111 00113457799999999986543 356777766666665
No 13
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated protein; KIX, 3 helical bundle, transcription; NMR {Homo sapiens}
Probab=29.51 E-value=53 Score=24.38 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCchhhhhhhhccchHHHHHHHHHHHHHHhcCCChhhhhhhhhHhhccC
Q 020949 191 DCFREVVREKVCDALSKVSGEADEEIRDEVNACDSVRVAIALESAMFEKWGRSDGPYKIKYRAVLGNLK 259 (319)
Q Consensus 191 d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~RSl~fNLK 259 (319)
..+|++++..+-++++....... .=|.++|.++|.... +..+|-.-+=-++..++
T Consensus 12 ~~FRq~vi~~i~~a~~~~G~~~~-------------k~a~emEnhvF~Ka~-tkdEYL~lvarli~h~r 66 (77)
T 2gut_A 12 TAFRQKLVSQIEDAMRKAGVAHS-------------KSSKDMESHVFLKAK-TRDEYLSLVARLIIHFR 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCS-------------SCHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhCCCCC-------------CCHHHHHHHHHhccC-cccchHHHHHHHHHHHH
Confidence 57999999999999986421111 236799999997654 23567766655555443
No 14
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=28.90 E-value=41 Score=26.98 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhcCC----ChhhhhhhhhHhhccCCCCChhHHhhhhcCCcCccccccCChhh
Q 020949 226 VRVAIALESAMFEKWGRS----DGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKE 287 (319)
Q Consensus 226 ~~lA~~IE~~lf~~~~~~----~~~Yk~k~RSl~fNLKD~kNp~Lr~~Vl~G~I~p~~lv~Mt~eE 287 (319)
..++..++..|++.|.+. ++..-+-+|+|..|= .-.|.|.+....-.|+.++|...=+.|
T Consensus 29 ~~F~~~L~~~L~~~y~~HW~P~~P~kGsayRcIrin~--~~Dp~l~~Aa~~sgl~~~~l~~~LP~e 92 (120)
T 3e9v_A 29 KVFSGALQEALTEHYKHHWFPEKPSKGSGYRCIRINH--KMDPIISRVASQIGLSQPQLHQLLPSE 92 (120)
T ss_dssp HHHHHHHHHHHHHHHTTSCCTTSTTTTHHHHCEECSS--SCCHHHHHHHHHTTCCHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCceeEEEECC--CCCHHHHHHHHHhCCCHHHHHHhCCcc
Confidence 579999999999998753 345668888888883 467888888887777777764333333
No 15
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=22.44 E-value=61 Score=26.30 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhcCC----ChhhhhhhhhHhhccCCCCChhHHhhhhcCCcCccccccCChhh
Q 020949 226 VRVAIALESAMFEKWGRS----DGPYKIKYRAVLGNLKDPKNPDFRRKVLFGQVKPETVVGMTAKE 287 (319)
Q Consensus 226 ~~lA~~IE~~lf~~~~~~----~~~Yk~k~RSl~fNLKD~kNp~Lr~~Vl~G~I~p~~lv~Mt~eE 287 (319)
..++..++..|++.|.+. ....-+.+|+|.+| ....|.|.+....--|+.++|...=+.|
T Consensus 33 ~~F~~~L~~~L~~~y~~HWyP~~P~kGs~yRcI~i~--~~~Dp~i~~Aa~~sGl~~~dl~~~LP~e 96 (130)
T 2z15_A 33 NIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHIG--EKVDPVIEQASKESGLDIDDVRGNLPQD 96 (130)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCTTTTHHHHCEEES--SSBCHHHHHHHHTTTCCHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCcccceeEEEEC--CCCCHHHHHHHHHhCCCHHHHHHhCCcc
Confidence 579999999999999753 35577888999997 4578899888887777777665433333
Done!