BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020950
         (319 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase
 pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase
 pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase Covalently Inhibited By Paraoxon
 pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase Covalently Inhibited By Paraoxon
 pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase Covalently Inhibited By Soman
 pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase Covalently Inhibited By Soman
 pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase Covalently Inhibited By Tabun
 pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase Covalently Inhibited By Tabun
 pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase Covalently Inhibited By Tabun
 pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase Covalently Inhibited By
           Diisopropylfluorophosphate
 pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase Covalently Inhibited By
           Diisopropylfluorophosphate
          Length = 383

 Score = 33.9 bits (76), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 58  GGEFPVLILLHGYVLLNSFYSQLILHVASHGFIVIA 93
           G ++P+++  HG     + YS + + +ASHGFIV A
Sbjct: 95  GEKYPLVVFSHGLGAFRTLYSAIGIDLASHGFIVAA 130


>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase Covalently Inhibited By Sarin
 pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
           Factor Acetylhydrolase Covalently Inhibited By Sarin
          Length = 383

 Score = 33.5 bits (75), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 58  GGEFPVLILLHGYVLLNSFYSQLILHVASHGFIVIA 93
           G ++P+++  HG     + YS + + +ASHGFIV A
Sbjct: 95  GEKYPLVVFSHGLGAFRTLYSAIGIDLASHGFIVAA 130


>pdb|2FX5|A Chain A, Pseudomonas Mendocina Lipase
          Length = 258

 Score = 31.6 bits (70), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 56  DAGGEFPVLILLHGYVLLNSFYSQLILHVASHGFIVIAPQLYNVA 100
             G   PV++  +G     S Y+ L+ H ASHGF+V A +  N  
Sbjct: 44  QGGVRHPVILWGNGTGAGPSTYAGLLSHWASHGFVVAAAETSNAG 88


>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
 pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
 pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
 pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
          Length = 286

 Score = 29.6 bits (65), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 24/38 (63%)

Query: 60 EFPVLILLHGYVLLNSFYSQLILHVASHGFIVIAPQLY 97
          E PV++ +HG +     + ++ L +A+ G+ V+AP L+
Sbjct: 25 EHPVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLF 62


>pdb|3F67|A Chain A, Crystal Structure Of Putative Dienelactone Hydrolase
          From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
          Length = 241

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 56 DAGGEFPVLILLHGYVLLNSFYSQLILHVASHGFIVIAPQLY 97
          +A G  P++I++     ++     L   +A  G++ IAP+LY
Sbjct: 27 NADGPLPIVIVVQEIFGVHEHIRDLCRRLAQEGYLAIAPELY 68


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,668,091
Number of Sequences: 62578
Number of extensions: 329898
Number of successful extensions: 638
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 8
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)