Query 020952
Match_columns 319
No_of_seqs 294 out of 1559
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_s 60S acidic ribosomal pr 100.0 1.1E-97 4E-102 706.1 19.8 318 1-319 1-319 (319)
2 3u5i_q A0, L10E, 60S acidic ri 100.0 1.3E-95 4E-100 689.9 13.1 309 7-319 4-312 (312)
3 2zkr_g 60S acidic ribosomal pr 100.0 2.7E-95 9E-100 689.1 -5.7 316 1-319 1-317 (317)
4 3j21_k Acidic ribosomal protei 100.0 8.7E-81 3E-85 595.7 15.9 259 6-264 3-263 (339)
5 1vq8_G Acidic ribosomal protei 100.0 1.3E-76 4.3E-81 566.5 3.4 266 5-277 10-276 (348)
6 3a1y_G Acidic ribosomal protei 100.0 8.1E-71 2.8E-75 516.4 15.2 267 5-273 2-270 (284)
7 3jsy_A Acidic ribosomal protei 100.0 2.5E-66 8.6E-71 467.0 15.3 209 8-216 2-211 (213)
8 2j01_J 50S ribosomal protein L 99.9 5.3E-22 1.8E-26 173.0 10.8 94 8-110 3-98 (173)
9 1zav_A 50S ribosomal protein L 99.9 1.2E-21 4E-26 171.8 10.9 97 7-110 4-105 (180)
10 3sgf_H 50S ribosomal protein L 99.8 5.6E-22 1.9E-26 171.5 -1.3 97 7-110 4-101 (165)
11 3iz5_t 60S acidic ribosomal pr 99.7 3.9E-18 1.3E-22 137.2 4.0 87 207-319 20-110 (110)
12 3izc_t 60S acidic ribosomal pr 99.7 4.4E-18 1.5E-22 136.1 3.6 87 207-319 19-106 (106)
13 3iz5_v 60S acidic ribosomal pr 99.6 9.4E-17 3.2E-21 129.6 2.1 86 208-319 17-113 (113)
14 3izc_v 60S acidic ribosomal pr 99.6 1.6E-16 5.6E-21 127.0 2.0 84 208-319 16-106 (106)
15 3j21_k Acidic ribosomal protei 99.3 2.2E-13 7.5E-18 130.0 2.8 227 13-258 36-283 (339)
16 1vq8_G Acidic ribosomal protei 99.1 4.3E-12 1.5E-16 121.1 0.0 154 94-259 131-286 (348)
17 3iz5_s 60S acidic ribosomal pr 98.9 3.6E-10 1.2E-14 106.8 1.2 205 12-237 38-263 (319)
18 3a1y_G Acidic ribosomal protei 98.8 7.3E-09 2.5E-13 96.5 9.0 230 12-258 35-283 (284)
19 3u5i_q A0, L10E, 60S acidic ri 98.8 1E-09 3.5E-14 103.4 0.6 208 12-239 35-260 (312)
20 2zkr_g 60S acidic ribosomal pr 98.6 7.7E-10 2.6E-14 104.5 -4.5 176 40-235 74-258 (317)
21 2lbf_A 60S acidic ribosomal pr 96.6 0.0017 5.7E-08 47.6 3.6 46 208-279 22-67 (69)
22 2lbf_B 60S acidic ribosomal pr 93.0 0.14 4.9E-06 37.3 4.9 44 208-277 18-61 (70)
23 3jsy_A Acidic ribosomal protei 92.8 0.11 3.9E-06 45.8 5.0 151 12-176 32-203 (213)
24 3a1y_A 50S ribosomal protein P 92.4 0.065 2.2E-06 37.7 2.3 41 208-274 16-56 (58)
25 3izc_t 60S acidic ribosomal pr 78.4 0.42 1.4E-05 37.6 0.0 6 304-309 94-99 (106)
26 3izc_v 60S acidic ribosomal pr 51.3 3.2 0.00011 32.5 0.0 6 304-309 94-99 (106)
27 1d7q_A Translation initiation 42.0 8.1 0.00028 31.8 1.1 51 146-197 60-121 (143)
28 3hg9_A PILM; structural genomi 35.3 28 0.00096 28.1 3.3 69 80-168 56-126 (131)
29 2eo2_A Adult MALE hypothalamus 33.1 26 0.00089 25.2 2.4 45 128-188 24-68 (71)
30 2dgy_A MGC11102 protein; EIF-1 29.7 17 0.00059 28.5 1.1 43 146-189 44-98 (111)
31 3i38_A Putative chaperone DNAJ 27.6 42 0.0014 25.8 3.1 55 121-181 39-93 (109)
32 1xao_A YDJ1, mitochondrial pro 26.9 1E+02 0.0034 24.0 5.2 59 122-183 36-97 (121)
33 3rht_A (gatase1)-like protein; 24.5 64 0.0022 28.8 4.1 38 20-57 46-85 (259)
34 3gdw_A Sigma-54 interaction do 22.1 1.1E+02 0.0036 24.5 4.6 51 13-64 46-102 (139)
35 3mvn_A UDP-N-acetylmuramate:L- 21.3 2E+02 0.0069 23.0 6.3 45 13-57 52-100 (163)
36 3gx1_A LIN1832 protein; APC633 20.7 1.1E+02 0.0037 24.1 4.3 52 12-64 45-100 (130)
No 1
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=100.00 E-value=1.1e-97 Score=706.10 Aligned_cols=318 Identities=80% Similarity=1.228 Sum_probs=256.5
Q ss_pred CCcccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccc
Q 020952 1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLN 80 (319)
Q Consensus 1 m~~~~~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~ 80 (319)
|+.++.+++||+++|++|+++|++|+++||++|+||+++|+|+||+.||++++|+|+||||||+||+++.++++.+++++
T Consensus 1 m~~~~~~~e~K~~~v~el~e~l~~y~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~e~~~~~~le~ 80 (319)
T 3iz5_s 1 MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLE 80 (319)
T ss_dssp CCCCSSSCCCSSHHHHHHHHHHHHCSEEEEEECTTSCHHHHHHHHHHHHHHSCEECCSTTTCCHHHHHHHSSSCCSSSSS
T ss_pred CCCccchHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcEEEEEhHHHHHHHHhhchhhhccccHHH
Confidence 55578889999999999999999999999999999999999999999997789999999999999999977776677999
Q ss_pred cccccCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecC
Q 020952 81 LIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 160 (319)
Q Consensus 81 L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d 160 (319)
|.++|+||+||+|||+||.+++++|.+|++++|||+|+|||+||+||+|+|+|+|+++||||+|||||+|++|+|+|.+|
T Consensus 81 L~~~L~G~~gl~FT~~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~VpaG~tg~~P~~~s~fq~LgiptkI~kG~I~I~~d 160 (319)
T 3iz5_s 81 LMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 160 (319)
T ss_dssp SSCCCCTTEEEEEESSCHHHHHHHHHHSCEEECCCTTCBCSSCEEECCEECCCCSSCTHHHHHHTCCEEEETTEEEECSC
T ss_pred HHHHhcCCeEEEEECCChHHHHHHHHHccccccccCCCcCCceEEECCCCCCCCCcchHHHHHcCCceEEecCeEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcCh
Q 020952 161 VELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240 (319)
Q Consensus 161 ~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~ 240 (319)
++||++||+||++||+||++|||+|++|+|.|+++|++|.+|++++|+||+|+|+++|.+|++++++||+++||||++++
T Consensus 161 ~~v~k~G~~v~~~~A~lL~~l~i~p~~f~l~l~~~~d~g~i~~~~vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~ 240 (319)
T 3iz5_s 161 VELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAA 240 (319)
T ss_dssp EEEECTTSBCCHHHHHHHHHHTCCCEEESCEEEEEEETTEEECHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTH
T ss_pred eEEEecCCCcCHHHHHHHHHhCCCceEEEeeeeEEEeCCceeCHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCcccccccccCCCC-CcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGGGD-APAAAAKEEEKKEEPAEESDGDMGFSLFD 319 (319)
Q Consensus 241 p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~a~~~a~~~~~-~~~~~~~~~~~k~e~~ee~d~dmgfglFd 319 (319)
||+|.|+|+++++|+++++|+||+++++|++|+||++|++|+ |+|++++ +++++++++++++|++|||||||||||||
T Consensus 241 ~~~i~~a~k~~~ala~~~~~~~~~~e~ik~~l~~p~~~a~aa-~~a~~~~~~~~~~~~~~~~~~e~~ee~d~d~gf~lfd 319 (319)
T 3iz5_s 241 PHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAA-PVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319 (319)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCC----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCchhHHHHHhhhhhhcccc-ccccccccccccccccccccccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999998876 4333221 11222223344456778899999999998
No 2
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=100.00 E-value=1.3e-95 Score=689.93 Aligned_cols=309 Identities=44% Similarity=0.748 Sum_probs=137.0
Q ss_pred cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccccccccC
Q 020952 7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQ 86 (319)
Q Consensus 7 ~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l~ 86 (319)
+|+||+++|++|+++|++|+++||++|+|++++|+++||+.||+.++++|+||||||+|++++.++ .+++++|.++|+
T Consensus 4 ~re~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~--~~~le~L~~~L~ 81 (312)
T 3u5i_q 4 IREKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSD--LPDFEKLLPFVK 81 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSS--SCGGGGTGGGCC
T ss_pred cHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCceEEEeehHHHHHHHhhCccc--ccChHHHHHhcc
Confidence 699999999999999999999999999999999999999999988899999999999999997544 345999999999
Q ss_pred CceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecCeeEeec
Q 020952 87 GNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRK 166 (319)
Q Consensus 87 G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v~~~ 166 (319)
||+||+|||+||.+++++|.+|++++|||+|+|||+||+||+|+|+|+|+++||||+|||||+|++|+|+|.+|++||++
T Consensus 82 G~~gl~Ft~~dp~~v~k~l~~~k~~~pAr~GaiAp~dV~Ip~G~tg~~P~~~s~fq~Lgiptki~kG~I~I~~d~~v~k~ 161 (312)
T 3u5i_q 82 GNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDA 161 (312)
T ss_dssp SSEEEEEESSCHHHHHHHHHTSSCCC------------------------------------------------------
T ss_pred CCEEEEEECCCHHHHHHHHHhccCcccccCCCcCCceEEECCCCCCCCCcchHHHHHcCCCeEeeCCEEEEccceEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHH
Q 020952 167 GDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVN 246 (319)
Q Consensus 167 G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~ 246 (319)
||+||++||+||++|||+|++|++.|+++|++|.+|++++|+||+|+|+++|.+|++++++||+++||||++++||+|.|
T Consensus 162 G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~i~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~ 241 (312)
T 3u5i_q 162 GNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPXXXXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLIN 241 (312)
T ss_dssp ----------------------CCEEEEEEESSCCCCSTTTSCCSSTTTHHHHHHHTTCC--------------------
T ss_pred CCCcCHHHHHHHHHcCcCcEEEEEEEEEEecCCceeccccccccccccccccccchhhHhhhHHhhCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcccHHHHhcCCCCcccccccccCCCCCcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952 247 AYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLFD 319 (319)
Q Consensus 247 a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~a~~~a~~~~~~~~~~~~~~~~k~e~~ee~d~dmgfglFd 319 (319)
+|+++++|+++++|+||+++++|++|+||++|++|+ |+++++++++++ +++++++||+|||||||||||||
T Consensus 242 a~k~~~a~a~~~~~~~~~~~~ik~~la~p~a~a~aa-~~a~~~~~~~~~-~~~~~~~e~~ee~d~d~gf~lfd 312 (312)
T 3u5i_q 242 NYKDLLAVAIAASYHYPEIEDLVDRIENPEKYAAAA-PAATSAASGDAA-PAEEAAAEEEEESDDDMGFGLFD 312 (312)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhcccCccchhHHHHHhChhhhhccc-cccccccccccc-ccccccccccccccccCCCCCCC
Confidence 999999999999999999999999999999998876 444322222222 23334456678899999999998
No 3
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=2.7e-95 Score=689.11 Aligned_cols=316 Identities=52% Similarity=0.844 Sum_probs=29.2
Q ss_pred CCcccccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccc
Q 020952 1 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLN 80 (319)
Q Consensus 1 m~~~~~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~ 80 (319)
|+ ++.+++||+++|++|+++|++|++++|++|+||+++|+++||+.||+.++|+|+||||||+||+++.+. .+++++
T Consensus 1 ~~-~~~~~e~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~--~~~~e~ 77 (317)
T 2zkr_g 1 MP-REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEK 77 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC-ccchHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcCcEEEEEeHHHHHHHHhhCccc--ccchhh
Confidence 66 777899999999999999999999999999999999999999999988999999999999999998543 345999
Q ss_pred cccccCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecC
Q 020952 81 LIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP 160 (319)
Q Consensus 81 L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d 160 (319)
|.++|+||+||+||++||.+++++|.+|++++|||+|+|||+||+||+|+|+|+|+++++||+|||||+|++|+|+|.+|
T Consensus 78 L~~~L~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~Ip~G~t~~~p~~~~~fq~LgipTkI~kG~I~i~~d 157 (317)
T 2zkr_g 78 LLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSD 157 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccCCCEEEEEECCCHHHHHHHHHHhCccchhccCCcCCceEEeCCCCCCCCCcchHHHHHcCCCeEeeCCeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcCh
Q 020952 161 VELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAA 240 (319)
Q Consensus 161 ~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~ 240 (319)
++||++||+||++||+||++|||+|++|+|+|+++|++|.+|++++|+||+|+|+++|.+|++++++||+++||||++++
T Consensus 158 ~~v~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~d~g~~~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~~pt~~s~ 237 (317)
T 2zkr_g 158 VQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASV 237 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEecCCCCcCHHHHHHHHHcCCCceeeeeeeeEEEecCcccchHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCcccccccccCCCC-CcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952 241 PHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVAGGGD-APAAAAKEEEKKEEPAEESDGDMGFSLFD 319 (319)
Q Consensus 241 p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~a~~~a~~~~~-~~~~~~~~~~~k~e~~ee~d~dmgfglFd 319 (319)
||+|.|+|+++++|+++++|+||+++++|++|+||++++++++|+|++++ +++++++++++++||+|||||||||||||
T Consensus 238 ~~~i~~a~~~~~ala~~~~~~~~ea~~vk~~l~~~~~~~~a~a~~a~~~~~~~~~~~~~~~~~~ee~ee~d~d~gf~lfd 317 (317)
T 2zkr_g 238 PHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317 (317)
T ss_dssp -----------------------CHHHHHTTTHHHHHHHHHHHHHTTSSHHHHHHHHHHSTTHHHHTSSCC---------
T ss_pred HHHHHHHHHHHHHHHhhcccChhhhhhHHHHHhccCccccccccccccccccccccccccccccCCccccccccCcCCCC
Confidence 99999999999999999999999999999999999998766323332221 11222233444456678889999999998
No 4
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.7e-81 Score=595.73 Aligned_cols=259 Identities=27% Similarity=0.485 Sum_probs=206.1
Q ss_pred ccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHHhchhhcCCccccccccc
Q 020952 6 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPL 84 (319)
Q Consensus 6 ~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~-~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~ 84 (319)
+.++||+++|++|+++|++|+++||++|+||+++|+++||+.||+. ++|+|+||||||+|++++.++++.+++++|.++
T Consensus 3 ~~~e~K~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~ 82 (339)
T 3j21_k 3 HVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINY 82 (339)
T ss_dssp ---CCTTTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCC
T ss_pred ccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHH
Confidence 3689999999999999999999999999999999999999999975 899999999999999999777777789999999
Q ss_pred cCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcc-hhhhhhcCcceEEecceEEEecCeeE
Q 020952 85 LQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVEL 163 (319)
Q Consensus 85 l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~-~~~fq~LgIptki~~G~I~i~~d~~v 163 (319)
|+||+||+|||+||.+++++|.+|++++|||+|+|||+||+||+|||++.|++ +++||+|||||+|++|+|+|.+|++|
T Consensus 83 L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~Ip~G~t~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v 162 (339)
T 3j21_k 83 IEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVV 162 (339)
T ss_dssp CCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTTCBCSSCEEECCEECSCCSSHHHHHHHHHTCCEEEETTEEEECSCEEE
T ss_pred hcCCeEEEEECCCHHHHHHHHHHcCCcccccCCCcCCceEEecCCCCCCCCCccHHHHHHcCCCeEeccCeEEEccceEE
Confidence 99999999999999999999999999999999999999999999999999999 59999999999999999999999999
Q ss_pred eecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHH
Q 020952 164 IRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243 (319)
Q Consensus 164 ~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~ 243 (319)
|++|++||++||+||++|||+|++|++.|+++|++|.+|++++|+||+|+|++.|++|++++.+||+++||||++++||+
T Consensus 163 ~k~G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp~~ 242 (339)
T 3j21_k 163 LKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAI 242 (339)
T ss_dssp ECTTSBCCHHHHHHHHHHTCCCSCCSCEEEEEEETTEEECHHHHCCCHHHHHHHC-------------------------
T ss_pred EecCCCcCHHHHHHHHHcCCCcEEeeeeEEEEEeCCcEecHHhCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCC
Q 020952 244 FVNAYKNVVAVALATEYSFPQ 264 (319)
Q Consensus 244 i~~a~~~~~al~~~~~~~~~~ 264 (319)
|+|||+++++|+++++|++|+
T Consensus 243 i~~a~k~~lala~~~~~~~~e 263 (339)
T 3j21_k 243 IQKAFLNAKAVAVEAGYITKE 263 (339)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHhhcCCCChh
Confidence 999999999999999999987
No 5
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=100.00 E-value=1.3e-76 Score=566.46 Aligned_cols=266 Identities=26% Similarity=0.469 Sum_probs=28.3
Q ss_pred cccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccccccc
Q 020952 5 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPL 84 (319)
Q Consensus 5 ~~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~ 84 (319)
+++++||.++|++|+++|++|+++||++|+|++++|+++||+.||+.++|+|+||||||+||+++.. +++.|.++
T Consensus 10 k~~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~-----~le~L~~~ 84 (348)
T 1vq8_G 10 ETIPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERALDDVDD-----GLEDLNGY 84 (348)
T ss_dssp --CCHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHTC----------------
T ss_pred cccHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhcceEEEeHHHHHHHHHHhCCc-----chHHHHHh
Confidence 4568999999999999999999999999999999999999999998799999999999999998742 38999999
Q ss_pred cCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcch-hhhhhcCcceEEecceEEEecCeeE
Q 020952 85 LQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVEL 163 (319)
Q Consensus 85 l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~-~~fq~LgIptki~~G~I~i~~d~~v 163 (319)
|+|++||+||++||.+++++|.+|++++|||+|.+||+||+||+|+|+++|+++ ++||+|||||+|++|+|+|.+|++|
T Consensus 85 LkG~tal~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~IpaG~t~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~v 164 (348)
T 1vq8_G 85 ITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTV 164 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCEEEEEeCCCHHHHHHHHHHhcccchhhcCCcCCceEEeCCCCCCCCCCchHHHHHHcCCCEEeccCceEecCceEE
Confidence 999999999999999999999999999999999999999999999999999996 9999999999999999999999999
Q ss_pred eecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHH
Q 020952 164 IRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHM 243 (319)
Q Consensus 164 ~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~ 243 (319)
|++|++||++||+||++|||+|++|++.|+++|++|.+|++++|+||+|+|+++|++|++++++||+++||||++++||+
T Consensus 165 ~k~G~~v~~~~A~LL~~LgI~p~~f~l~l~~~~d~g~~~~~~vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~ 244 (348)
T 1vq8_G 165 LDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTM 244 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeCCCCcCHHHHHHHHHcCCCceeeeeeeEEEEeCCcccCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCC
Q 020952 244 FVNAYKNVVAVALATEYSFPQADKVKEYLADPSK 277 (319)
Q Consensus 244 i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a 277 (319)
|.|||+++++|+++++|+||+. +..+|+..-+
T Consensus 245 i~~a~~~~~ala~~~~~~~~~~--~~~il~kA~~ 276 (348)
T 1vq8_G 245 LQSDRGNAKSLALQAAIEDPEV--VPDLVSKADA 276 (348)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHhcCcCChhh--HHHHHHHHHH
Confidence 9999999999999999999984 5566665443
No 6
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.1e-71 Score=516.37 Aligned_cols=267 Identities=28% Similarity=0.487 Sum_probs=187.3
Q ss_pred cccHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCC-cEEEEEehHHHHHHHHhchhhcCCcccccccc
Q 020952 5 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGD-SVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP 83 (319)
Q Consensus 5 ~~~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~-~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~ 83 (319)
+++++||+++|++|++++++|+.++|++|+|++++|+++||+.||+. ++|+|+||||||+|++++.++++.++++.|.+
T Consensus 2 ~~~~e~K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~ 81 (284)
T 3a1y_G 2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVE 81 (284)
T ss_dssp CSSCCCTTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSC
T ss_pred CCcHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhh
Confidence 45789999999999999999999999999999999999999999965 89999999999999999987777778999999
Q ss_pred ccCCceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcch-hhhhhcCcceEEecceEEEecCee
Q 020952 84 LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVE 162 (319)
Q Consensus 84 ~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~-~~fq~LgIptki~~G~I~i~~d~~ 162 (319)
+|+|++||+||++||.+++++|.+|+.++|+|+|.|+++||+||+|+|++.|+++ ++||+|||||+|++|+|+|.+|++
T Consensus 82 ~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~Gaia~~dv~ip~g~~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~ 161 (284)
T 3a1y_G 82 YIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTT 161 (284)
T ss_dssp CCCTTEEEEEESSCHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred hcCCCEEEEEECCCHHHHHHHHHHhcchhhhhcCCccceeEEecCCCCCCCCcchHHHHHHCCCCeEEecCeeEeecceE
Confidence 9999999999999999999999999999999999999999999999999977775 999999999999999999999999
Q ss_pred EeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhH
Q 020952 163 LIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH 242 (319)
Q Consensus 163 v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~ 242 (319)
||++|++|+++||+||++|||+|++|++.++++|++|.+|++++|+||+|++...|.+|++++.+||+++||||++++||
T Consensus 162 v~~~G~~l~~~~a~lL~~L~i~~~~~~l~i~~~~~~~~~~~~~vl~i~~e~~~~~~~~a~~~a~~lsl~~~~pt~~s~~~ 241 (284)
T 3a1y_G 162 VLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEA 241 (284)
T ss_dssp ---------------------CCCCCCCEEEEEEETTEEECHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTHHH
T ss_pred EEecCCCcCHHHHHHHHHcCCCHHHHHHHHHHHhhccccCCHHHccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcccHHHHhc
Q 020952 243 MFVNAYKNVVAVALATEYSFPQADKVKEYLA 273 (319)
Q Consensus 243 ~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~ 273 (319)
+|.|||+++++||++++|+||+ .+.++|+
T Consensus 242 ~i~ka~~~~~ala~~~~~~~~~--~~~~~~~ 270 (284)
T 3a1y_G 242 IIQKAFLNAKTVAIEAGYITKE--TIQDIIG 270 (284)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTT--THHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChh--hHHHHHH
Confidence 9999999999999999999998 5666774
No 7
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.5e-66 Score=467.05 Aligned_cols=209 Identities=30% Similarity=0.487 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHHHHHhchhhcCCccccccccccCC
Q 020952 8 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQG 87 (319)
Q Consensus 8 ~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l~G 87 (319)
++||+++|++|++++++|+++||++|+|++++|+++||+.||+.++|+|+||||||+|++++.++++.+++++|.++|+|
T Consensus 2 ~e~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~~~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G 81 (213)
T 3jsy_A 2 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVER 81 (213)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCCEEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence 48999999999999999999999999999999999999999988899999999999999999877778889999999999
Q ss_pred ceEEEEecCChHHHHHHHHhhccCccccCCCccCceEEeCCCCCCCCCcc-hhhhhhcCcceEEecceEEEecCeeEeec
Q 020952 88 NVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRK 166 (319)
Q Consensus 88 ~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~-~~~fq~LgIptki~~G~I~i~~d~~v~~~ 166 (319)
|+||+||++||.+++++|.+|++++|||+|++||+||+||+|+|++.|++ +++||+|||||+|++|+|+|.+|++||++
T Consensus 82 ~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~GaiAp~dV~ip~G~t~~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~ 161 (213)
T 3jsy_A 82 GAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKK 161 (213)
T ss_dssp SEEEEEESSCHHHHHHHHHHSCEEECCCTTCBCSSCEEECSEEEEECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECT
T ss_pred CeEEEEeCCCHHHHHHHHHHcCCcccccCCCcCCceEEECCCCCCCCCCccHHHHHHcCCceEeecCeEEEccceEEEec
Confidence 99999999999999999999999999999999999999999999999999 59999999999999999999999999999
Q ss_pred CcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHH
Q 020952 167 GDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVE 216 (319)
Q Consensus 167 G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~ 216 (319)
||+||++||+||++|||+|++|++.++++|++|.+|++++|+||+|+|.+
T Consensus 162 G~~v~~~~A~lL~~l~i~p~~~~l~l~~~~~~g~i~~~~~L~i~~e~~~~ 211 (213)
T 3jsy_A 162 GEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLA 211 (213)
T ss_dssp TSBCCHHHHHHHHHTTCCCEEESCEEEEEEETTEEECHHHHHHHCSCTTS
T ss_pred CCCcCHHHHHHHHHcCCCcEEEEEEEEEEEeCCceeCHHHcccCHHHHhh
Confidence 99999999999999999999999999999999999999999999998764
No 8
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=99.86 E-value=5.3e-22 Score=172.95 Aligned_cols=94 Identities=15% Similarity=0.302 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHhccC-eEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHHhchhhcCCcccccccccc
Q 020952 8 AEKKIAYDAKLCQLLEEYT-QILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL 85 (319)
Q Consensus 8 ~e~K~~~v~~l~e~l~~y~-~v~vv~~~~v~~~ql~~iR~~Lr~-~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l 85 (319)
|+||.++|++|+++|++|+ .+++++|+|++++|+++||+.||+ +++|+|+|||||++|++++. ++. .++|
T Consensus 3 ~~~K~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~~-------~~~-~~~l 74 (173)
T 2j01_J 3 NKRNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGARLFVAKNTLIRLALKELG-------LPE-LDGL 74 (173)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHHCCcEEEEehhHHHHHHHhcCC-------CCc-cccc
Confidence 8999999999999999999 999999999999999999999997 58999999999999999863 889 9999
Q ss_pred CCceEEEEecCChHHHHHHHHhhcc
Q 020952 86 QGNVGLIFTKGDLKEVKEEVAKYKV 110 (319)
Q Consensus 86 ~G~~gliFT~~dp~~v~k~l~~~k~ 110 (319)
+|+++++|| +||.+++++|.+|..
T Consensus 75 ~G~~a~~fs-~dp~~~ak~l~~f~k 98 (173)
T 2j01_J 75 QGPSAVVFY-EDPVAAAKTLVQFAK 98 (173)
T ss_pred cCCEEEEEe-CCHHHHHHHHHHHHH
Confidence 999999999 999999999999854
No 9
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=99.86 E-value=1.2e-21 Score=171.81 Aligned_cols=97 Identities=16% Similarity=0.266 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC----CcEEEEEehHHHHHHHHhchhhcCCccccccc
Q 020952 7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG----DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI 82 (319)
Q Consensus 7 ~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~----~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~ 82 (319)
+|+||.++|++|++++++|+.+++++|+|+++.|+++||++||+ +++|+|+|||||++|++++. ++.|.
T Consensus 4 ~~~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~~~V~KNtL~~~Al~~~~-------~~~L~ 76 (180)
T 1zav_A 4 TRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAE-------YEGYE 76 (180)
T ss_dssp CHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTT-------CCSCG
T ss_pred CHHHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeEEEEehHHHHHHHHccCC-------hhhHH
Confidence 48999999999999999999999999999999999999999995 48999999999999999863 89999
Q ss_pred cccCCceEEEEec-CChHHHHHHHHhhcc
Q 020952 83 PLLQGNVGLIFTK-GDLKEVKEEVAKYKV 110 (319)
Q Consensus 83 ~~l~G~~gliFT~-~dp~~v~k~l~~~k~ 110 (319)
++|+|+++++||+ +||.+++++|.+|..
T Consensus 77 ~~l~G~~a~~fs~~~dp~~~ak~l~~f~k 105 (180)
T 1zav_A 77 EFLKGPTAVLYVTEGDPVEAVKIIYNFYK 105 (180)
T ss_dssp GGCSSSEEEEEESSSCTHHHHHHHHHHHH
T ss_pred HhCcCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 9999999999999 999999999999854
No 10
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=99.82 E-value=5.6e-22 Score=171.52 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHHHHHhccCeEEEEEeCCCCcHHHHHHHHHccC-CcEEEEEehHHHHHHHHhchhhcCCcccccccccc
Q 020952 7 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLL 85 (319)
Q Consensus 7 ~~e~K~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~~iR~~Lr~-~~~~~v~KNtl~r~Al~~~~~~~~~~~~~~L~~~l 85 (319)
+|++|.++|++|++.|++|+.++++||+|++++|+++||+.||+ +++|+|+||||+++|++++ +++.|.++|
T Consensus 4 ~r~~K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~~~V~KNtL~~~Al~~~-------~~~~L~~~l 76 (165)
T 3sgf_H 4 NLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGT-------PFECLKDAF 76 (165)
T ss_dssp HHHHHHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSSEECCCCTTTTTTTTTC-------TTTCTTCST
T ss_pred CHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcEEEEECcHHHHHHHhcC-------CcchhHHhC
Confidence 59999999999999999999999999999999999999999997 5899999999999999985 399999999
Q ss_pred CCceEEEEecCChHHHHHHHHhhcc
Q 020952 86 QGNVGLIFTKGDLKEVKEEVAKYKV 110 (319)
Q Consensus 86 ~G~~gliFT~~dp~~v~k~l~~~k~ 110 (319)
+||++++||++||.++++++.+|..
T Consensus 77 ~G~tai~fs~~dp~~~aK~l~~f~K 101 (165)
T 3sgf_H 77 VGPTLIAYSMEHPGAAARLFKEFAK 101 (165)
T ss_dssp TCCSCCCEEEECSSCSHHHHHHHHH
T ss_pred cCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 11
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=99.70 E-value=3.9e-18 Score=137.17 Aligned_cols=87 Identities=34% Similarity=0.484 Sum_probs=39.6
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCcccccccc-
Q 020952 207 LDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPV- 285 (319)
Q Consensus 207 l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~a~~~a- 285 (319)
..||.+.|. +|..++|+.+++.||.+|++++.+ .+|+++|++.++++++++++
T Consensus 20 ~~itad~I~-----------~ilkAaGveVe~~~~~lfakaL~g---------------knI~eLI~sv~~gg~a~~a~a 73 (110)
T 3iz5_t 20 IPITSEKIA-----------TVVKAAGIKVEAYWPALFAKLLEK---------------RSVDDLILSVGSGGGGAPAAA 73 (110)
T ss_dssp CCCSHHHHH-----------HHHHHHTCCCCSHHHHHHHHHHTT---------------CCHHHHHTCCC----------
T ss_pred CCcChHHHH-----------HHHHHhCCcccHHHHHHHHHHcCC---------------CCHHHHHhcCCCccccccccc
Confidence 467888876 888999999999999999999998 49999999987665433111
Q ss_pred cC--C-CCCcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952 286 AG--G-GDAPAAAAKEEEKKEEPAEESDGDMGFSLFD 319 (319)
Q Consensus 286 ~~--~-~~~~~~~~~~~~~k~e~~ee~d~dmgfglFd 319 (319)
++ + +++++++++++++|+|++|||||||||||||
T Consensus 74 ~~a~~~~~~~~a~~~~~e~k~ee~EEsddDmGfgLFd 110 (110)
T 3iz5_t 74 AAAPAAGGAAAAEEKKEEKKEEAKEESDDDMGFSLFD 110 (110)
T ss_dssp -------------------------------------
T ss_pred cccccccccccccchhhhhccccccccccccccccCC
Confidence 11 1 1111222334455567788999999999998
No 12
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=99.70 E-value=4.4e-18 Score=136.06 Aligned_cols=87 Identities=38% Similarity=0.559 Sum_probs=39.5
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCccccccccc
Q 020952 207 LDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFAVAAAPVA 286 (319)
Q Consensus 207 l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~~a~~~a~ 286 (319)
..||.+.|. +|..++|+.+++.||.+|++++.+ .+|+++|++.+++++++++++
T Consensus 19 ~~~tad~I~-----------~ilkAaGveVe~~~~~lfa~aL~g---------------knI~eLI~~~~ag~~~~aa~a 72 (106)
T 3izc_t 19 IEISSEKLL-----------TLTNAANVPDENIWADIFAKALDG---------------QNLKDLLVNFSAGAAAPAGVA 72 (106)
T ss_dssp CCCSHHHHH-----------HHHHHHTCCCCHHHHHHHHHHHTT---------------CCHHHHTTCCC----------
T ss_pred CCCCHHHHH-----------HHHHHcCCcccHHHHHHHHHHhcC---------------CCHHHHHHhccCcCccccccc
Confidence 357888776 889999999999999999999999 499999999877554431111
Q ss_pred CC-CCCcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952 287 GG-GDAPAAAAKEEEKKEEPAEESDGDMGFSLFD 319 (319)
Q Consensus 287 ~~-~~~~~~~~~~~~~k~e~~ee~d~dmgfglFd 319 (319)
++ ++++.++++++++|+|++|||||||||||||
T Consensus 73 ~~a~~~~~a~~~~~~~kee~~EEsddDmGfgLFd 106 (106)
T 3izc_t 73 GGVAGGEAGEAEAEKEEEEAKEESDDDMGFGLFD 106 (106)
T ss_dssp ----------------------------------
T ss_pred ccccccccccchhhhhhcccccccccccccCcCC
Confidence 11 1111122234445567788999999999998
No 13
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=99.61 E-value=9.4e-17 Score=129.60 Aligned_cols=86 Identities=30% Similarity=0.394 Sum_probs=35.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhc-------CCCCccc
Q 020952 208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA-------DPSKFAV 280 (319)
Q Consensus 208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~-------~~~a~~~ 280 (319)
+||.++|. +|..++|+.+++.||.+|++++.+ .+|+++|+ +.+++++
T Consensus 17 ~ptad~I~-----------~ILkAaGveVe~~~~~lf~~aL~g---------------k~I~eLIa~G~~kl~~v~~gg~ 70 (113)
T 3iz5_v 17 SPSAEDLT-----------SILESVGCEIDNEKMELMLSQVKG---------------KDITELLAAGREKFAAVPSGGG 70 (113)
T ss_dssp CCTTTTHH-----------HHHHHHTCCCCHHHHHHHHHHHTT---------------CCHHHHHHSCC-----------
T ss_pred CCCHHHHH-----------HHHHHcCCCcCHHHHHHHHHHhcC---------------CCHHHHHHhhHHHhccCCCccc
Confidence 46677765 888899999999999999999998 59999996 4443332
Q ss_pred cc-ccccC--CC-CCcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952 281 AA-APVAG--GG-DAPAAAAKEEEKKEEPAEESDGDMGFSLFD 319 (319)
Q Consensus 281 a~-~~a~~--~~-~~~~~~~~~~~~k~e~~ee~d~dmgfglFd 319 (319)
++ +++++ ++ ++++++++++++|+|++|||||||||||||
T Consensus 71 aa~a~a~a~a~~~~a~~a~~~~~e~k~ee~EEsDdDmGFgLFD 113 (113)
T 3iz5_v 71 GVAVSAAAPAAGGAAAPAAESKKEEKVVEKEESDDDMGFSLFD 113 (113)
T ss_dssp -------------------------------------------
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccCcCC
Confidence 22 11111 11 111122233444567788899999999998
No 14
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=99.60 E-value=1.6e-16 Score=127.00 Aligned_cols=84 Identities=30% Similarity=0.372 Sum_probs=35.2
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhc-------CCCCccc
Q 020952 208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA-------DPSKFAV 280 (319)
Q Consensus 208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~-------~~~a~~~ 280 (319)
.||.+.|. +|..++|+.+++.||.+|.+++.+ .+|+++|+ +.+++++
T Consensus 16 e~tad~I~-----------~ilkAaGveVe~~~~~~f~~aL~g---------------kdI~eLIa~g~~klasv~sgg~ 69 (106)
T 3izc_v 16 TPDATKIK-----------AILESVGIEIEDEKVSSVLSALEG---------------KSVDELITEGNEKLAAVPAAGP 69 (106)
T ss_dssp CCTTTTHH-----------HHHHHHTCCCCHHHHHHHHHHHTT---------------CCHHHHHHSCC-----------
T ss_pred CCCHHHHH-----------HHHHHcCCCcCHHHHHHHHHHcCC---------------CCHHHHHHhhhHHhccCCCccc
Confidence 36677765 888999999999999999999998 59999998 4333332
Q ss_pred ccccccCCCCCcchhhhhhhhccCCcccccCCCCCCCCC
Q 020952 281 AAAPVAGGGDAPAAAAKEEEKKEEPAEESDGDMGFSLFD 319 (319)
Q Consensus 281 a~~~a~~~~~~~~~~~~~~~~k~e~~ee~d~dmgfglFd 319 (319)
++ +++++++++ ++++++++|+|++|||||||||||||
T Consensus 70 a~-aa~a~~a~~-~~~~~~e~kee~~EEsdddmGfgLFd 106 (106)
T 3izc_v 70 AS-AGGAAAASG-DAAAEEEKEEEAAEESDDDMGFGLFD 106 (106)
T ss_dssp ---------------------------------------
T ss_pred cc-ccccccccc-ccccccccccccccccccccCCCCCC
Confidence 22 111111111 12233445567788999999999998
No 15
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.34 E-value=2.2e-13 Score=130.00 Aligned_cols=227 Identities=13% Similarity=0.144 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhccCeEEEEEeCCCCcHH------------HHHHHHHccCCcEEEEEehHH--HHHHHHhchhhcCC-cc
Q 020952 13 AYDAKLCQLLEEYTQILVAAADNVGSNQ------------LQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-TA 77 (319)
Q Consensus 13 ~~v~~l~e~l~~y~~v~vv~~~~v~~~q------------l~~iR~~Lr~~~~~~v~KNtl--~r~Al~~~~~~~~~-~~ 77 (319)
..+.+||..+......++|-=..+-..- +..|-..|+|..-|.+.+... +++.|.......+. .|
T Consensus 36 ~ql~~lR~~lr~~g~~~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~L~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~G 115 (339)
T 3j21_k 36 YPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPG 115 (339)
T ss_dssp THHHHHHHHHHHTTEEEECCHHHHSCHHHHHHHSSCCCSSSSSSSCCCCTTEEEEEESSCHHHHHHHHHHSCCCCCCCTT
T ss_pred HHHHHHHHHHhcCCeEEEEEhHHHHHHHHhcChhhhccccHHHHHHHhcCCeEEEEECCCHHHHHHHHHHcCCcccccCC
Confidence 3567788888876444444222222222 233344567777777776554 44445543211111 00
Q ss_pred ----ccccccccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEEe
Q 020952 78 ----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKIN 151 (319)
Q Consensus 78 ----~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~ 151 (319)
.+-..+ .|+ |...|..+...|.+...|+....|. |....+++++|++ ++|++...|+.|||.+.-.
T Consensus 116 aiAp~dV~Ip--~G~-----t~~~p~~~~~~fq~lgiptki~~G~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~ 187 (339)
T 3j21_k 116 AKVPKDVVIP--AGP-----TSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEE-ITPELANILNALGIQPLEV 187 (339)
T ss_dssp CBCSSCEEEC--CEE-----CSCCSSHHHHHHHHHTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHHTCCCSCC
T ss_pred CcCCceEEec--CCC-----CCCCCCccHHHHHHcCCCeEeccCeEEEccceEEEecCCC-cCHHHHHHHHHcCCCcEEe
Confidence 011111 355 5678999889999999999999999 7778889999998 9999999999999999988
Q ss_pred cceEEEecCeeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHH
Q 020952 152 KGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALA 231 (319)
Q Consensus 152 ~G~I~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~ 231 (319)
+-+| ..+...|...+++ .|.|....|.-.+...+.+...++-++-++|++.+...+.+|++++.+|+.+
T Consensus 188 ~l~l-----~~~~~~g~i~~~~------~L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp~~i~~a~k~~lala~~ 256 (339)
T 3j21_k 188 GLDL-----LAVYEDGIIYTPD------VLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVE 256 (339)
T ss_dssp SCEE-----EEEEETTEEECHH------HHCCCHHHHHHHC---------------------------------------
T ss_pred eeeE-----EEEEeCCcEecHH------hCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 8888 5677788889996 5779999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcChhHHHHHHHHHHHHHHHhc
Q 020952 232 ISYPTLAAAPHMFVNAYKNVVAVALAT 258 (319)
Q Consensus 232 a~~pt~~~~p~~i~~a~~~~~al~~~~ 258 (319)
++|.++++++.++.+|++++++++...
T Consensus 257 ~~~~~~e~~~~~l~ka~~~~~alaa~~ 283 (339)
T 3j21_k 257 AGYITKETISDIIGRAIRAMLLLAQQL 283 (339)
T ss_dssp ---------------------------
T ss_pred cCCCChhhHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999887654
No 16
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=99.14 E-value=4.3e-12 Score=121.10 Aligned_cols=154 Identities=17% Similarity=0.101 Sum_probs=0.0
Q ss_pred ecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecCeeEeecCcccC
Q 020952 94 TKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVG 171 (319)
Q Consensus 94 T~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v~~~G~~v~ 171 (319)
|..+|..+...|.+...|+....|. |....+++++|.. ++|++...|+.|||...--+-+| ..+...|...+
T Consensus 131 t~~~P~~~~~~fq~LgIPTkI~kG~I~I~~d~~v~k~G~~-v~~~~A~LL~~LgI~p~~f~l~l-----~~~~d~g~~~~ 204 (348)
T 1vq8_G 131 TGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEE-VSQELSNVLNELGIEPKEVGLDL-----RAVFADGVLFE 204 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCchHHHHHHcCCCEEeccCceEecCceEEeeCCCC-cCHHHHHHHHHcCCCceeeeeee-----EEEEeCCcccC
Confidence 4457888889999999999999997 7778889999998 99999999999999998888777 45566777778
Q ss_pred hhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHH
Q 020952 172 SSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNV 251 (319)
Q Consensus 172 ~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~ 251 (319)
++. |.|....|.-++...+.+-..++-++-++|++.+.-.+.+|++++.+|+++++|.++++++.++.+|+.++
T Consensus 205 ~~v------L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~~~~~ala~~~~~~~~~~~~~il~kA~~~~ 278 (348)
T 1vq8_G 205 PEE------LELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSDRGNAKSLALQAAIEDPEVVPDLVSKADAQV 278 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHH------ccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHhcCcCChhhHHHHHHHHHHHH
Confidence 864 56999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 020952 252 VAVALATE 259 (319)
Q Consensus 252 ~al~~~~~ 259 (319)
++|+...+
T Consensus 279 ~ala~~~~ 286 (348)
T 1vq8_G 279 RALASQID 286 (348)
T ss_dssp --------
T ss_pred HHHHHhcC
Confidence 99988765
No 17
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=98.86 E-value=3.6e-10 Score=106.83 Aligned_cols=205 Identities=11% Similarity=0.074 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhccCeEEEEEeCCCCcHHHH------------HHHHHccCCcEEEEEehHH--HHHHHHhchhhcCC-c
Q 020952 12 IAYDAKLCQLLEEYTQILVAAADNVGSNQLQ------------NIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-T 76 (319)
Q Consensus 12 ~~~v~~l~e~l~~y~~v~vv~~~~v~~~ql~------------~iR~~Lr~~~~~~v~KNtl--~r~Al~~~~~~~~~-~ 76 (319)
...+.+||..+.....+ ++-=..|--.-+. +|-..|+|..-+.+.+... +++.|.......+. .
T Consensus 38 v~ql~~LR~~lR~~~~~-~V~KNTL~r~Al~~~~e~~~~~~le~L~~~L~G~~gl~FT~~dp~~v~k~l~~~k~~~pAr~ 116 (319)
T 3iz5_s 38 SNQLQEIRKGLRGDSIV-LMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116 (319)
T ss_dssp HHHHHHHHHHHHHHSCE-ECCSTTTCCHHHHHHHSSSCCSSSSSSSCCCCTTEEEEEESSCHHHHHHHHHHSCEEECCCT
T ss_pred HHHHHHHHHHHhCCcEE-EEEhHHHHHHHHhhchhhhccccHHHHHHHhcCCeEEEEECCChHHHHHHHHHccccccccC
Confidence 34567788888754343 3332233222232 3334566666777776544 34445443211111 0
Q ss_pred c----ccccccccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEE
Q 020952 77 A----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKI 150 (319)
Q Consensus 77 ~----~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki 150 (319)
| .+-..+ .|++ ..+|.. ...|.+...|+....|. |....+++++|++ ++|++...|+.|||...-
T Consensus 117 GaiAp~dV~Vp--aG~t-----g~~P~~-~s~fq~LgiptkI~kG~I~I~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~ 187 (319)
T 3iz5_s 117 GLVAPVDVVVP--PGNT-----GLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIKKGDK-VGSSESALLAKLGIRPFS 187 (319)
T ss_dssp TCBCSSCEEEC--CEEC-----CCCSSC-THHHHHHTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHHTCCCEE
T ss_pred CCcCCceEEEC--CCCC-----CCCCcc-hHHHHHcCCceEEecCeEEEcCceEEEecCCC-cCHHHHHHHHHhCCCceE
Confidence 0 011111 4664 456766 37899999999999999 6777889999998 999999999999999999
Q ss_pred ecceEEEecCeeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHH
Q 020952 151 NKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALAL 230 (319)
Q Consensus 151 ~~G~I~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~ 230 (319)
-+-+| ..+...|...+++ .|+|....|.-++...+.+-..++-++-++|.+.+.-.+.+|++++.+|++
T Consensus 188 f~l~l-----~~~~d~g~i~~~~------vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~ala~ 256 (319)
T 3iz5_s 188 YGLVI-----TNVYDSGSVFSPE------VLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAV 256 (319)
T ss_dssp ESCEE-----EEEEETTEEECHH------HHSCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTHHHHHHHHHHHHHHHHS
T ss_pred EEeee-----eEEEeCCceeCHH------HcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99888 6677788888987 467999999999999998888888999999999999999999999999999
Q ss_pred HcCCCCC
Q 020952 231 AISYPTL 237 (319)
Q Consensus 231 ~a~~pt~ 237 (319)
+++|..+
T Consensus 257 ~~~~~~~ 263 (319)
T 3iz5_s 257 ETEYSYP 263 (319)
T ss_dssp SSSCCC-
T ss_pred hcCcccC
Confidence 9999776
No 18
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=98.83 E-value=7.3e-09 Score=96.52 Aligned_cols=230 Identities=11% Similarity=0.118 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhccCeEEEEEeCCCCcHH------------HHHHHHHccCCcEEEEEehHH--HHHHHHhchhhcCC-c
Q 020952 12 IAYDAKLCQLLEEYTQILVAAADNVGSNQ------------LQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-T 76 (319)
Q Consensus 12 ~~~v~~l~e~l~~y~~v~vv~~~~v~~~q------------l~~iR~~Lr~~~~~~v~KNtl--~r~Al~~~~~~~~~-~ 76 (319)
...+.+||..+.+...-+.+-=..+-..- +..|-..|+|..-+.+.+... +++.+.+...+.+. .
T Consensus 35 ~~ql~~lR~~lr~~g~~~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~~l~G~~al~Ft~~dp~~vak~l~~f~~~~~ar~ 114 (284)
T 3a1y_G 35 AYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKP 114 (284)
T ss_dssp HHHHHHHHHHHHHTTEEEEECSSSSCCHHHHHHHTTCSCSSTTSSSCCCCTTEEEEEESSCHHHHHHHHHHCCCC-----
T ss_pred HHHHHHHHHHHHhcCcEEEEeHHHHHHHHHhhCccccccccHHHHhhhcCCCEEEEEECCCHHHHHHHHHHhcchhhhhc
Confidence 35677888888877555555433343333 333444567766677765433 44555544211111 0
Q ss_pred c-cccccc-ccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEEec
Q 020952 77 A-FLNLIP-LLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152 (319)
Q Consensus 77 ~-~~~L~~-~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~ 152 (319)
| +..-.- .-.|+ |...|..+...|.+...|.....|. |..+..++.+|.. ++|++...|+.|||...--+
T Consensus 115 Gaia~~dv~ip~g~-----~~~~p~~~~~~l~~LgIptki~~g~I~i~~d~~v~~~G~~-l~~~~a~lL~~L~i~~~~~~ 188 (284)
T 3a1y_G 115 GAVVPKDVVVPAGP-----TPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEV-ITPELANILNALGIQPLEVG 188 (284)
T ss_dssp --------------------------------------------------------------------------CCCCCC
T ss_pred CCccceeEEecCCC-----CCCCCcchHHHHHHCCCCeEEecCeeEeecceEEEecCCC-cCHHHHHHHHHcCCCHHHHH
Confidence 0 000000 11344 4456888889999999999999998 5677789999997 99999999999999998888
Q ss_pred ceEEEecCeeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHc
Q 020952 153 GTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAI 232 (319)
Q Consensus 153 G~I~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a 232 (319)
-.| ..+...|...+++. |.|.+..+...+...+.+...++.+.-++|++.+...+.+|++++.+|+.++
T Consensus 189 l~i-----~~~~~~~~~~~~~v------l~i~~e~~~~~~~~a~~~a~~lsl~~~~pt~~s~~~~i~ka~~~~~ala~~~ 257 (284)
T 3a1y_G 189 LDV-----LAVYEDGIVYTPDV------LAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEA 257 (284)
T ss_dssp CEE-----EEEEETTEEECHHH------HSCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHH-----HHHhhccccCCHHH------ccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 887 56677888888864 4588888888888888888888889999999999999999999999999999
Q ss_pred CCCCCcChhHHHHHHHHHHHHHHHhc
Q 020952 233 SYPTLAAAPHMFVNAYKNVVAVALAT 258 (319)
Q Consensus 233 ~~pt~~~~p~~i~~a~~~~~al~~~~ 258 (319)
+|.++++++.++++|+.++++|+...
T Consensus 258 ~~~~~~~~~~~~~ka~~~~~~l~~~~ 283 (284)
T 3a1y_G 258 GYITKETIQDIIGRAFRAMLLLAQQL 283 (284)
T ss_dssp TCCCTTTHHHHHHHHHHHHHHHHTTC
T ss_pred CCCChhhHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998643
No 19
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=98.76 E-value=1e-09 Score=103.43 Aligned_cols=208 Identities=13% Similarity=0.090 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhccCeEEEEE-------eCCCC--cHHHHHHHHHccCCcEEEEEehHH--HHHHHHhchhhcCC-cc--
Q 020952 12 IAYDAKLCQLLEEYTQILVAA-------ADNVG--SNQLQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-TA-- 77 (319)
Q Consensus 12 ~~~v~~l~e~l~~y~~v~vv~-------~~~v~--~~ql~~iR~~Lr~~~~~~v~KNtl--~r~Al~~~~~~~~~-~~-- 77 (319)
...+.+||..+.....++++. +.+.. ...+.+|-..|+|..-+.+.+... +++.|.......+. .|
T Consensus 35 v~ql~~LR~~lR~~~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~~gl~Ft~~dp~~v~k~l~~~k~~~pAr~Gai 114 (312)
T 3u5i_q 35 SQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGAV 114 (312)
T ss_dssp HHHHHHHHHHHSSSCEEEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSSEEEEEESSCHHHHHHHHHTSSCCC-------
T ss_pred HHHHHHHHHHHhcCceEEEeehHHHHHHHhhCcccccChHHHHHhccCCEEEEEECCCHHHHHHHHHhccCcccccCCCc
Confidence 356778888888765544331 11211 124556666778777777776543 33344433211110 00
Q ss_pred --ccccccccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEEecc
Q 020952 78 --FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKG 153 (319)
Q Consensus 78 --~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G 153 (319)
.+-..+ .|+++ .+|.. ...|.+...|+....|. |....+++++|++ ++|++...|+.|||...--+-
T Consensus 115 Ap~dV~Ip--~G~tg-----~~P~~-~s~fq~Lgiptki~kG~I~I~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~~l 185 (312)
T 3u5i_q 115 APEDIWVR--AVNTG-----MEPGK-TSFFQALGVPTKIARGTIEIVSDVKVVDAGNK-VGQSEASLLNLLNISPFTFGL 185 (312)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCceEEEC--CCCCC-----CCCcc-hHHHHHcCCCeEeeCCEEEEccceEEEeCCCC-cCHHHHHHHHHcCcCcEEEEE
Confidence 111112 57754 56665 67799999999999998 6677789999998 999999999999999998888
Q ss_pred eEEEecCeeEeecCcccChhHHHHHHHhCCCcccccceeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcC
Q 020952 154 TVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAIS 233 (319)
Q Consensus 154 ~I~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~ 233 (319)
+| ..+...|...+++ .|+|....|.-++...+.+-..++-++-++|++.+.-.+.+|++++.+|+++++
T Consensus 186 ~l-----~~~~d~g~i~~~~------~L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~a~a~~~~ 254 (312)
T 3u5i_q 186 TV-----VQVYDNGQVFPXX------XXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLINNYKDLLAVAIAAS 254 (312)
T ss_dssp EE-----EEEEESSCCCCST------TTSCCSSTTTHHHHHHHTTCC---------------------------------
T ss_pred EE-----EEEecCCceeccc------cccccccccccccccchhhHhhhHHhhCCCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88 5677788999997 467999999999999999988899999999999999999999999999999999
Q ss_pred CCCCcC
Q 020952 234 YPTLAA 239 (319)
Q Consensus 234 ~pt~~~ 239 (319)
|..+..
T Consensus 255 ~~~~~~ 260 (312)
T 3u5i_q 255 YHYPEI 260 (312)
T ss_dssp ------
T ss_pred ccCccc
Confidence 976654
No 20
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.63 E-value=7.7e-10 Score=104.48 Aligned_cols=176 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCcEEEEEehHHH--HHHHHhchhhcCC-cc----ccccccccCCceEEEEecCChHHHHHHHHhhccCc
Q 020952 40 QLQNIRRGLRGDSVVLMGKNTMM--KRTIRMHAEKTGN-TA----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGA 112 (319)
Q Consensus 40 ql~~iR~~Lr~~~~~~v~KNtl~--r~Al~~~~~~~~~-~~----~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~ 112 (319)
.+..|-..|+|..-+.+.+.... ++.+.+.....+. .| .+-..+ .|+++ .+|.. ...|.+...|+
T Consensus 74 ~~e~L~~~L~G~~al~Ft~~Dp~~vaK~l~~f~~~~pAr~GaiAp~dV~Ip--~G~t~-----~~p~~-~~~fq~LgipT 145 (317)
T 2zkr_g 74 ALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVP--AQNTG-----LGPEK-TSFFQALGITT 145 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhhhhccCCCEEEEEECCCHHHHHHHHHHhCccchhccCCcCCceEEeC--CCCCC-----CCCcc-hHHHHHcCCCe
Confidence 56667777777666655544322 2223322111110 00 111222 56643 45666 57899999999
Q ss_pred cccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecCeeEeecCcccChhHHHHHHHhCCCcccccc
Q 020952 113 PARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGL 190 (319)
Q Consensus 113 ~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~~l 190 (319)
....|. |....+++++|+. ++|++...|+.|||...--+-+| ..+...|...+++. |+|....|.-
T Consensus 146 kI~kG~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~~~l~l-----~~~~d~g~~~~~~~------L~i~~e~~~~ 213 (317)
T 2zkr_g 146 KISRGTIEILSDVQLIKTGDK-VGASEATLLNMLNISPFSFGLVI-----QQVFDNGSIYNPEV------LDITEETLHS 213 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeeCCeEEEecceEEecCCCC-cCHHHHHHHHHcCCCceeeeeee-----eEEEecCcccchHh------ccCCHHHHHH
Confidence 999998 7788889999998 99999999999999998888777 45667777888864 5699999999
Q ss_pred eeeeEeeCCcccCCCcccCChHHHHHHHHHHHHHHHHHHHHcCCC
Q 020952 191 VVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYP 235 (319)
Q Consensus 191 ~i~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~ls~~a~~p 235 (319)
++...+.+-..++-++-++|++.+.-.+.+|++++.+|+++++|.
T Consensus 214 ~~~~~~~~~~~lsl~~~~pt~~s~~~~i~~a~~~~~ala~~~~~~ 258 (317)
T 2zkr_g 214 RFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 258 (317)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 999999998889999999999999999999999999999999984
No 21
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=96.57 E-value=0.0017 Score=47.56 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=41.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCCcc
Q 020952 208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFA 279 (319)
Q Consensus 208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a~~ 279 (319)
.||.+++. ++..++|+.+++.||.+|++++.+ .+|+++|+|+++++
T Consensus 22 ~~ta~~I~-----------~il~AaGveve~~~~~lf~~aL~g---------------k~I~elI~~~g~g~ 67 (69)
T 2lbf_A 22 TVTEDKIN-----------ALIKAAGVNVEPFWPGLFAKALAN---------------VNIGSLICNVGAGG 67 (69)
T ss_dssp CCCHHHHH-----------HHHHHHTCCCCTHHHHHHHHHTTT---------------SCGGGGGTTTTCCC
T ss_pred CCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHHCC---------------CCHHHHHHhccCCC
Confidence 67888876 889999999999999999999998 59999999988654
No 22
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=93.00 E-value=0.14 Score=37.32 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=38.8
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcCCCC
Q 020952 208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSK 277 (319)
Q Consensus 208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~~~a 277 (319)
.||.+++. ++..++|+.+++.||.+|++++.+ .+|+++|++...
T Consensus 18 ~~ta~~I~-----------~il~aaGvevd~~~~~~~~~aL~g---------------k~i~elIa~g~~ 61 (70)
T 2lbf_B 18 SPSAKDIK-----------KILDSVGIEADDDRLNKVISELNG---------------KNIEDVIAQGIG 61 (70)
T ss_dssp SCCHHHHH-----------HHHHTTTCCCCTTHHHHHHHHHSS---------------CCHHHHHTTCSS
T ss_pred CCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHHcC---------------CCHHHHHHHHHH
Confidence 57777776 889999999999999999999998 599999988664
No 23
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=92.83 E-value=0.11 Score=45.84 Aligned_cols=151 Identities=11% Similarity=0.094 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhccCeEEEEEeCCCC------------cHHHHHHHHHccCCcEEEEEehHH--HHHHHHhchhhcCC-c
Q 020952 12 IAYDAKLCQLLEEYTQILVAAADNVG------------SNQLQNIRRGLRGDSVVLMGKNTM--MKRTIRMHAEKTGN-T 76 (319)
Q Consensus 12 ~~~v~~l~e~l~~y~~v~vv~~~~v~------------~~ql~~iR~~Lr~~~~~~v~KNtl--~r~Al~~~~~~~~~-~ 76 (319)
...+.+||..+.... .+++-=..+- ...+.+|-..|+|..-+.+.+... +++.+.......+. .
T Consensus 32 ~~ql~~lR~~lr~~~-~~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G~~~l~Ft~~dp~~v~k~l~~~~~~~~Ar~ 110 (213)
T 3jsy_A 32 APQLQEIRDKIRDKV-KLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKLYKLLEENKSPAPVRG 110 (213)
T ss_dssp HHHHHHHHHHHTTTE-EEEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCSSEEEEEESSCHHHHHHHHHHSCEEECCCT
T ss_pred HHHHHHHHHHHhCCC-EEEEEeHHHHHHHHhhchhhhcccchhHHHHhCcCCeEEEEeCCCHHHHHHHHHHcCCcccccC
Confidence 345677888887653 3333111110 013445556678777777776544 33344443211111 0
Q ss_pred c----ccccccccCCceEEEEecCChHHHHHHHHhhccCccccCCC--ccCceEEeCCCCCCCCCcchhhhhhcCcceEE
Q 020952 77 A----FLNLIPLLQGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL--VAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKI 150 (319)
Q Consensus 77 ~----~~~L~~~l~G~~gliFT~~dp~~v~k~l~~~k~~~~ar~G~--iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki 150 (319)
| .+-..+ .|+++ ..|..+...|.+...|+....|. |....+++++|++ ++|++...|+.|||...-
T Consensus 111 GaiAp~dV~ip--~G~t~-----~~p~~~~~~~q~lgiptki~~G~I~i~~d~~v~k~G~~-v~~~~A~lL~~l~i~p~~ 182 (213)
T 3jsy_A 111 GQIAPCDIKVE--KGSTG-----MPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEV-VSPKLAAVLDRLGIKPIK 182 (213)
T ss_dssp TCBCSSCEEEC--SEEEE-----ECSSTHHHHHHHTTCCEEEETTEEEECSCEEEECTTSB-CCHHHHHHHHHTTCCCEE
T ss_pred CCcCCceEEEC--CCCCC-----CCCCccHHHHHHcCCceEeecCeEEEccceEEEecCCC-cCHHHHHHHHHcCCCcEE
Confidence 1 011111 46644 47888889999999999999998 7788889999998 999999999999999999
Q ss_pred ecceEEEecCeeEeecCcccChhHHH
Q 020952 151 NKGTVEIITPVELIRKGDKVGSSEAA 176 (319)
Q Consensus 151 ~~G~I~i~~d~~v~~~G~~v~~~~A~ 176 (319)
-+-+| ..+...|...+++...
T Consensus 183 ~~l~l-----~~~~~~g~i~~~~~L~ 203 (213)
T 3jsy_A 183 VGLNI-----LAVYEDGIIYTPDVLK 203 (213)
T ss_dssp ESCEE-----EEEEETTEEECHHHHH
T ss_pred EEEEE-----EEEEeCCceeCHHHcc
Confidence 98888 5667778888887544
No 24
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=92.41 E-value=0.065 Score=37.67 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=36.6
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcChhHHHHHHHHHHHHHHHhcccCCCCcccHHHHhcC
Q 020952 208 DLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLAD 274 (319)
Q Consensus 208 ~it~e~~~~~~~~a~~~~~~ls~~a~~pt~~~~p~~i~~a~~~~~al~~~~~~~~~~~~~i~~~l~~ 274 (319)
.||.+++. ++..++|+.+++.||.+|++++.+ .+|+++|++
T Consensus 16 ~~t~~~I~-----------~il~aaGveve~~~~~~~~~~L~g---------------k~i~elI~~ 56 (58)
T 3a1y_A 16 EINEENLK-----------AVLQAAGVEPEEARIKALVAALEG---------------VNIDEVIEK 56 (58)
T ss_dssp CCCHHHHH-----------HHHHHTTCCCCHHHHHHHHHHHSS---------------CCHHHHHHH
T ss_pred CCCHHHHH-----------HHHHHcCCCccHHHHHHHHHHHCC---------------CCHHHHHHc
Confidence 67888876 889999999999999999999988 599999865
No 25
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=78.40 E-value=0.42 Score=37.59 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=0.0
Q ss_pred CCcccc
Q 020952 304 EPAEES 309 (319)
Q Consensus 304 e~~ee~ 309 (319)
||+++.
T Consensus 94 EEsddD 99 (106)
T 3izc_t 94 EESDDD 99 (106)
T ss_dssp ------
T ss_pred cccccc
Confidence 444443
No 26
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=51.26 E-value=3.2 Score=32.53 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=0.0
Q ss_pred CCcccc
Q 020952 304 EPAEES 309 (319)
Q Consensus 304 e~~ee~ 309 (319)
||+++.
T Consensus 94 EEsddd 99 (106)
T 3izc_v 94 EESDDD 99 (106)
T ss_dssp ------
T ss_pred cccccc
Confidence 444443
No 27
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=42.05 E-value=8.1 Score=31.83 Aligned_cols=51 Identities=25% Similarity=0.263 Sum_probs=36.6
Q ss_pred cceEEecceEEEe-cCeeEe-------ecCcc---cChhHHHHHHHhCCCcccccceeeeEee
Q 020952 146 IPTKINKGTVEII-TPVELI-------RKGDK---VGSSEAALLAKLGIRPFSYGLVVQSVYE 197 (319)
Q Consensus 146 Iptki~~G~I~i~-~d~~v~-------~~G~~---v~~~~A~lL~~l~i~p~~~~l~i~~~~~ 197 (319)
||-|+.+ .|||. .|++++ .+|+. .+++|++.|++.|.=|.+|...-...++
T Consensus 60 I~GKmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~~~~~ 121 (143)
T 1d7q_A 60 IRGKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFG 121 (143)
T ss_dssp CCSGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCSSS
T ss_pred eccccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCcccccc
Confidence 5555555 66663 455555 45655 5799999999999999999887766554
No 28
>3hg9_A PILM; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, P protein, unknown function; 2.40A {Pseudomonas aeruginosa}
Probab=35.29 E-value=28 Score=28.11 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=47.6
Q ss_pred ccccccCCceEEEEec-CChHHHHHHHHhhccCccccCCCccCceEEeCCC-CCCCCCcchhhhhhcCcceEEecceEEE
Q 020952 80 NLIPLLQGNVGLIFTK-GDLKEVKEEVAKYKVGAPARVGLVAPIDVVVPPG-NTGLDPSQTSFFQVLNIPTKINKGTVEI 157 (319)
Q Consensus 80 ~L~~~l~G~~gliFT~-~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G-~t~~~p~~~~~fq~LgIptki~~G~I~i 157 (319)
.+..++.+.++++|.+ ..| .+...|.+-.... -.|....-.++-|.| ++++ -+|..|-.|.|
T Consensus 56 ~i~~~I~~Gr~yV~~~~~~p-gL~aaL~~~t~~S--l~G~~~~G~Lv~p~g~~~~i-----------~lPa~IP~Gsi-- 119 (131)
T 3hg9_A 56 RLQGYIAAGTSYAFIASPPA-GLAAAVDTGTESD--LVGVRRNGQLVTRRLGATAI-----------ALPAPIPEGAV-- 119 (131)
T ss_dssp TEEEEESSSCEEEEESSCCT-THHHHHHHHCCCE--EEEEESSSSEEETTTEEECC-----------CCCTTSCTTCE--
T ss_pred CeeEEEECCEEEEEecCCCc-hHHHHHHHhcCcc--eeEEeeCCEEECCCCCCccC-----------cCCCcCCCCCE--
Confidence 4566888999999995 455 5555666555444 677777777777777 3444 37777889998
Q ss_pred ecCeeEeecCc
Q 020952 158 ITPVELIRKGD 168 (319)
Q Consensus 158 ~~d~~v~~~G~ 168 (319)
+++|+|-
T Consensus 120 ----V~~~~~~ 126 (131)
T 3hg9_A 120 ----VAVKEGH 126 (131)
T ss_dssp ----EEEECCC
T ss_pred ----EEEeccc
Confidence 6666664
No 29
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.09 E-value=26 Score=25.23 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=35.3
Q ss_pred CCCCCCCCcchhhhhhcCcceEEecceEEEecCeeEeecCcccChhHHHHHHHhCCCcccc
Q 020952 128 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSY 188 (319)
Q Consensus 128 ~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v~~~G~~v~~~~A~lL~~l~i~p~~~ 188 (319)
.|--.++|.|...|++|||.-. .=+.+++++..-.-.|+|+|.+.
T Consensus 24 kG~R~Fs~iql~RL~kLGI~kt----------------dP~~LT~eEi~~FaRLdIDP~TI 68 (71)
T 2eo2_A 24 NGVREFSEIQLSRLKKLGIHKT----------------DPSTLTEEEVRKFARLNIDPATI 68 (71)
T ss_dssp SSSCCCCHHHHHHHHHHTCCCC----------------STTTCCHHHHHHHHHTCCCSTTC
T ss_pred CCeeecCHHHHHHHHHcCCCCC----------------CcccCCHHHHhhceecccCccce
Confidence 4555689999999999998421 12568999999999999999864
No 30
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.74 E-value=17 Score=28.49 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=27.8
Q ss_pred cceEEecceEEEe-cCeeEee--------cCcc---cChhHHHHHHHhCCCccccc
Q 020952 146 IPTKINKGTVEII-TPVELIR--------KGDK---VGSSEAALLAKLGIRPFSYG 189 (319)
Q Consensus 146 Iptki~~G~I~i~-~d~~v~~--------~G~~---v~~~~A~lL~~l~i~p~~~~ 189 (319)
||.|+.+ .|||. .|++++. +|+. .+++|++-|++.|.=|.+|.
T Consensus 44 i~GK~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~qvk~L~k~g~wP~~F~ 98 (111)
T 2dgy_A 44 MPSKYRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFS 98 (111)
T ss_dssp CCTTCCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECCHHHHHHHHHHTCSCHHHH
T ss_pred echhhcc-cEEEcCCCEEEEEecccCCcceEEEEEEeCHHHHHHHHHcCCCChHHh
Confidence 5555555 55553 4555553 2333 57899999999888887664
No 31
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=27.64 E-value=42 Score=25.76 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=37.6
Q ss_pred CceEEeCCCCCCCCCcchhhhhhcCcceEEecceEEEecCeeEeecCcccChhHHHHHHHh
Q 020952 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKL 181 (319)
Q Consensus 121 ~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d~~v~~~G~~v~~~~A~lL~~l 181 (319)
..+|.||+| ..|+..-.++--|+|..=.+|...|.=++.+ + +.+|++|..+|+.|
T Consensus 39 ~~~v~ip~g---~~~G~~~rl~G~G~p~~~~~GDL~v~~~V~~--P-~~Ls~~q~~~l~~l 93 (109)
T 3i38_A 39 SILLTVPPG---SQAGQRLRIKGKGLVSKTHTGDLFAVIKIVM--P-TKPDEKARELWQQL 93 (109)
T ss_dssp CEEEEECTT---CCTTCEEEETTCSCBCSSCBCCEEEEEEECC--C-SSCCHHHHHHHHHH
T ss_pred CEEEeeCCC---cCcCeEEEECCccCCCCCCCcCEEEEEEEEC--C-CCCCHHHHHHHHHH
Confidence 357899988 4566655566778886325677766633332 2 45999999999876
No 32
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=26.87 E-value=1e+02 Score=23.96 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=38.6
Q ss_pred ceEEeCCCCCCCCCcchhhhhhcCcceEE--ecceEEEecCeeEeecCc-ccChhHHHHHHHhCC
Q 020952 122 IDVVVPPGNTGLDPSQTSFFQVLNIPTKI--NKGTVEIITPVELIRKGD-KVGSSEAALLAKLGI 183 (319)
Q Consensus 122 ~dVvi~~G~t~~~p~~~~~fq~LgIptki--~~G~I~i~~d~~v~~~G~-~v~~~~A~lL~~l~i 183 (319)
..|.||+|.. ..|+..-.++-.|+|..= .+|...|.= .|.-+-. -++++|..+|+.|-=
T Consensus 36 ~~v~ip~g~v-~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~--~V~~P~~~~ls~~q~~~l~~l~~ 97 (121)
T 1xao_A 36 LKVGIVPGEV-IAPGMRKVIEGKGMPIPKYGGYGNLIIKF--TIKFPENHFTSEENLKKLEEILP 97 (121)
T ss_dssp EEEEECTTSC-CCTTCEEEETTCSCC------CCCEEEEE--EEECCCTTCSCHHHHHHHHHHSC
T ss_pred EEEEeCCCCe-eCCCcEEEECCCCCCCCCCCCCCCEEEEE--EEECCCCCCCCHHHHHHHHHHcc
Confidence 4678888854 556666566778988532 468887773 3333322 299999999998853
No 33
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=24.53 E-value=64 Score=28.78 Aligned_cols=38 Identities=8% Similarity=0.194 Sum_probs=31.6
Q ss_pred HHHhccCeEEEEEeCC--CCcHHHHHHHHHccCCcEEEEE
Q 020952 20 QLLEEYTQILVAAADN--VGSNQLQNIRRGLRGDSVVLMG 57 (319)
Q Consensus 20 e~l~~y~~v~vv~~~~--v~~~ql~~iR~~Lr~~~~~~v~ 57 (319)
+.|++|+.|++.|+.. ++..|++.||+..+.++-+.|.
T Consensus 46 ~~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~~GGgLi~~ 85 (259)
T 3rht_A 46 ELLAKQDLVILSDYPAERMTAQAIDQLVTMVKAGCGLVML 85 (259)
T ss_dssp HHHHTCSEEEEESCCGGGBCHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHhcCCEEEEcCCccccCCHHHHHHHHHHHHhCCeEEEe
Confidence 5688999999998764 8899999999999976666664
No 34
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=22.12 E-value=1.1e+02 Score=24.53 Aligned_cols=51 Identities=8% Similarity=-0.074 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhc------cCeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHH
Q 020952 13 AYDAKLCQLLEE------YTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKR 64 (319)
Q Consensus 13 ~~v~~l~e~l~~------y~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~ 64 (319)
++.+++++.+++ ...++++|+ |-+.+.-..+...++.+.++.-|=|+-|-.
T Consensus 46 ~~~~~i~~~i~~~~~d~g~GVLiL~Dm-GSp~n~a~~l~~~~~~~v~vI~gvnlpmll 102 (139)
T 3gdw_A 46 TMYEQLRNQVITQKESLNNGILLLTDM-GSLNSFGNMLFEETGIRTKAITMTSTMIVL 102 (139)
T ss_dssp HHHHHHHHHHHTSTGGGTTCEEEEECS-GGGGGHHHHHHHHHCCCEEEECSCCHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEeC-CCHHHHHHHHHHhhCCCEEEEeCCCHHHHH
Confidence 455666666654 347999999 888888888888776667777788887654
No 35
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=21.31 E-value=2e+02 Score=23.00 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhccCeEEEEEeCCC--CcHHH-HHHHHHccC-CcEEEEE
Q 020952 13 AYDAKLCQLLEEYTQILVAAADNV--GSNQL-QNIRRGLRG-DSVVLMG 57 (319)
Q Consensus 13 ~~v~~l~e~l~~y~~v~vv~~~~v--~~~ql-~~iR~~Lr~-~~~~~v~ 57 (319)
..++-+++.+...+.++|+...+. +..++ .++...++. +..+.++
T Consensus 52 a~l~al~~~~~~~riivvf~~g~~s~r~k~~~~~~~~~~~~aD~vi~~~ 100 (163)
T 3mvn_A 52 ATIDALRAKVGQQRILAVLEPRSNTMKMGVHKHELATSLQDADSVFIYQ 100 (163)
T ss_dssp HHHHHHHHHHTTSCEEEEECCC---------CHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHhcCCCcEEEEECCCCcchhhHHHHHHHHHHHhcCCEEEEEC
Confidence 445556665555566666655443 23333 556666653 3344444
No 36
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=20.69 E-value=1.1e+02 Score=24.11 Aligned_cols=52 Identities=12% Similarity=-0.047 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcc----CeEEEEEeCCCCcHHHHHHHHHccCCcEEEEEehHHHHH
Q 020952 12 IAYDAKLCQLLEEY----TQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKR 64 (319)
Q Consensus 12 ~~~v~~l~e~l~~y----~~v~vv~~~~v~~~ql~~iR~~Lr~~~~~~v~KNtl~r~ 64 (319)
.++.+++++.+++. ..++++|+ |-+.+.-..+....+.+.++.-|=|+-|-.
T Consensus 45 ~~~~~~i~~~i~~~d~~~GVLiL~Dm-GSp~n~a~~l~~~~~~~v~vI~gvnlpmll 100 (130)
T 3gx1_A 45 KAMYEKLKQTVVKLNPVKGVLILSDM-GSLTSFGNILTEELGIRTKTVTMVSTPVVL 100 (130)
T ss_dssp HHHHHHHHHHHHTSCCTTCEEEEECS-GGGGTHHHHHHHHHCCCEEEECSCCHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEeC-CCHHHHHHHHHHhcCCCEEEEeCCCHHHHH
Confidence 34566677777654 37999999 888888888888776667777788886654
Done!