BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020953
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/318 (72%), Positives = 254/318 (79%), Gaps = 2/318 (0%)
Query: 2 ENFPVISLENINGAERAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCM 61
ENFP+ISL+ +NG ERAA E I +ACENWGFFELVNHGI E DTVE+ TK HY+KC
Sbjct: 2 ENFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCX 61
Query: 62 EQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXX 121
EQRFKELVAS+ALEG+Q EV D DWESTF+++HLP S I+EVPDLDEEYR+V
Sbjct: 62 EQRFKELVASKALEGVQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRL 121
Query: 122 XXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAG 181
GYLK F+G+ GP FGTKVSNYPPCPKPDLIKGLRAHTDAG
Sbjct: 122 EKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAG 181
Query: 182 GIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQTD 241
GIILLFQDDKVSGLQLLKDGQWIDVPP RHSIVVNLGDQ+EVITNGKYKSV HRV++Q D
Sbjct: 182 GIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKD 241
Query: 242 GEGRMSLASFYNPGSDAVIYPAPALLEKEAEK-KQVYPKFVFEDYMKLYVPLKFQAKEPR 300
G R SLASFYNPGSDAVIYPAPAL+EKEAE+ KQVYPKFVF+DY KLY LKFQAKEPR
Sbjct: 242 G-ARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAKEPR 300
Query: 301 FEAMKAVETNVNLGPIAT 318
FEA KA ET+V PIAT
Sbjct: 301 FEAXKAXETDVKXDPIAT 318
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 141/296 (47%), Gaps = 17/296 (5%)
Query: 5 PVISLENINGAE---RAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCM 61
P I L+NI + R +E++ +A +WG L+NHGI + M+ V++ + + +
Sbjct: 48 PTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSV 107
Query: 62 EQR--FKELVASRALEGIQTEVND-----MDWESTFYVRHLPQST--INEVPDLDEEYRK 112
E++ + A+ ++G +++ + ++WE F+ P+ ++ P +Y +
Sbjct: 108 EEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIE 167
Query: 113 VMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIK 172
L+K G K++ YP CP+P+L
Sbjct: 168 ATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELAL 227
Query: 173 GLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSV 232
G+ AHTD + + + V GLQL +G+W+ + SIV+++GD +E+++NGKYKS+
Sbjct: 228 GVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSI 286
Query: 233 EHRVVSQTDGEGRMSLASFYNPGSDAVIY-PAPALLEKEAEKKQVYPKFVFEDYMK 287
HR + + + R+S A F P D ++ P P ++ E+ K +P F +++
Sbjct: 287 LHRGLVNKE-KVRISWAVFCEPPKDKIVLKPLPEMVSVESPAK--FPPRTFAQHIE 339
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 141/296 (47%), Gaps = 17/296 (5%)
Query: 5 PVISLENINGAE---RAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCM 61
P I L+NI + R +E++ +A +WG L+NHGI + M+ V++ + + +
Sbjct: 47 PTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSV 106
Query: 62 EQR--FKELVASRALEGIQTEVND-----MDWESTFYVRHLPQST--INEVPDLDEEYRK 112
E++ + A+ ++G +++ + ++WE F+ P+ ++ P +Y +
Sbjct: 107 EEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIE 166
Query: 113 VMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIK 172
L+K G K++ YP CP+P+L
Sbjct: 167 ATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELAL 226
Query: 173 GLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSV 232
G+ AHTD + + + V GLQL +G+W+ + SIV+++GD +E+++NGKYKS+
Sbjct: 227 GVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSI 285
Query: 233 EHRVVSQTDGEGRMSLASFYNPGSDAVIY-PAPALLEKEAEKKQVYPKFVFEDYMK 287
HR + + + R+S A F P D ++ P P ++ E+ K +P F +++
Sbjct: 286 LHRGLVNKE-KVRISWAVFCEPPKDKIVLKPLPEMVSVESPAK--FPPRTFAQHIE 338
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 138/296 (46%), Gaps = 17/296 (5%)
Query: 5 PVISLENINGAE---RAAILEKINEACENWGFFELVNHGIEPEFMDTVERLTKAHYRKCM 61
P I L+NI + R +E++ +A +WG L+NHGI + + V++ + + +
Sbjct: 48 PTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSV 107
Query: 62 EQR--FKELVASRALEGIQTEVND-----MDWESTFYVRHLPQST--INEVPDLDEEYRK 112
E++ + A+ ++G +++ + ++WE F+ P+ ++ P +Y +
Sbjct: 108 EEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIE 167
Query: 113 VMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIK 172
L+K G K++ YP CP+P+L
Sbjct: 168 ATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELAL 227
Query: 173 GLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSV 232
G+ AHTD + + + V GLQL +G+W+ + SIV ++GD +E+++NGKYKS+
Sbjct: 228 GVEAHTDVSALTFILHN-XVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSI 286
Query: 233 EHRVVSQTDGEGRMSLASFYNPGSDAVIY-PAPALLEKEAEKKQVYPKFVFEDYMK 287
HR + + + R+S A F P D ++ P P + E+ K +P F +++
Sbjct: 287 LHRGLVNKE-KVRISWAVFCEPPKDKIVLKPLPEXVSVESPAK--FPPRTFAQHIE 339
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLL-KDGQWIDVPPLRHSIVVN 216
++ +YPP PK AH D I LL ++ GL++L +DGQW+ + P +V+N
Sbjct: 172 RLLHYPPIPKDATGVRAGAHGDINTITLLLGAEE-GGLEVLDRDGQWLPINPPPGCLVIN 230
Query: 217 LGDQIEVITNGKYKSVEHRVVS---QTDGEGRMSLASFYNPGSD 257
+GD +E +TN S HRVV+ + G R S F + SD
Sbjct: 231 IGDXLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASD 274
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 150 ANGPTFGTKVSNYPPCPKPDLIKGLRA--HTDAGGIILLFQDDKVSGLQL-LKDGQWIDV 206
AN ++ +YPP + +RA H D I +L ++ GLQ+ KDG W+DV
Sbjct: 145 ANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDV 203
Query: 207 PPLRHSIVVNLGDQIEVITNGKYKSVEHRVVSQ--TD-GEGRMSLASFYNPGSDAVI 260
P +I++N+GD ++ ++G + S HRV++ TD + R+SL F +P V+
Sbjct: 204 PSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVL 260
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 177 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRV 236
H D I +L+Q + V LQ+ + D+ ++N G + +TN YK+ HR
Sbjct: 214 HEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR- 271
Query: 237 VSQTDGEGRMSLASFYNPGSDAVIYP 262
V + E R SL F N G D+VI P
Sbjct: 272 VKWVNAE-RQSLPFFVNLGYDSVIDP 296
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 3 NFPVISLENINGAERAA---ILEKINEACENWGFFELVNHGIEPEFMDTVERLTK 54
N P I + + G ++AA + ++I+ A + GFF VNHGI V+RL++
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI------NVQRLSQ 56
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 177 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRV 236
H D I +L+Q + V LQ+ + D+ ++N G + +TN YK+ HR
Sbjct: 214 HEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHR- 271
Query: 237 VSQTDGEGRMSLASFYNPGSDAVIYP 262
V + E R SL F N G D+VI P
Sbjct: 272 VKWVNAE-RQSLPFFVNLGYDSVIDP 296
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 3 NFPVISLENINGAERAA---ILEKINEACENWGFFELVNHGIEPEFMDTVERLTK 54
N P I + + G ++AA + ++I+ A + GFF VNHGI V+RL++
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI------NVQRLSQ 56
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 177 HTDAGGIILLFQDDKVSG---LQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVE 233
H D + L+ Q +G LQ G + D+P +++V G ++T G+ K+
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 242
Query: 234 HRVVS----QTDGEGRMSLASFYNPGSD 257
H V + Q G R S F P +D
Sbjct: 243 HHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 177 HTDAGGIILLFQDDKVSG---LQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVE 233
H D + L+ Q +G LQ G + D+P +++V G ++T G+ K+
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 242
Query: 234 HRVVS----QTDGEGRMSLASFYNPGSD 257
H V + Q G R S F P +D
Sbjct: 243 HHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 177 HTDAGGIILLFQDDKVSG---LQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVE 233
H D + L+ Q +G LQ G + D+P +++V G ++T G+ K+
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 242
Query: 234 HRVVS----QTDGEGRMSLASFYNPGSD 257
H V + Q G R S F P +D
Sbjct: 243 HHVAAPRRDQIAGSSRTSSVFFLRPNAD 270
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 177 HTDAGGIILLFQDDKVSG---LQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVE 233
H D + L+ Q +G LQ G + D+P +++V G ++T G+ K+
Sbjct: 203 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 262
Query: 234 HRVVS----QTDGEGRMSLASFYNPGSD 257
H V + Q G R S F P +D
Sbjct: 263 HHVAAPRRDQIAGSSRTSSVFFLRPNAD 290
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 177 HTDAGGIILLFQDDKVSG---LQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVE 233
H D + L+ Q +G LQ G + D+P +++V G ++T G+ K+
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 242
Query: 234 HRVVS----QTDGEGRMSLASFYNPGSD 257
H V + Q G + S F P +D
Sbjct: 243 HHVAAPRRDQIAGSSQTSSVFFLRPNAD 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,152,167
Number of Sequences: 62578
Number of extensions: 359504
Number of successful extensions: 860
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 19
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)