Your job contains 1 sequence.
>020954
MAEYYPPPAGLHYGYYQTPPPPPPPPPPPPGGVVAPPTQPYMPQPQPQPPPLGSYSASFP
AYGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQS
ALGAMYALNKGSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVH
MPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGPKNVTPCATLFVANLG
PTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTS
DGIRLEFAKSRMGMPRKAK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020954
(319 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2060015 - symbol:AT2G42240 species:3702 "Arabi... 687 1.2e-67 1
TAIR|locus:2091526 - symbol:AT3G13700 species:3702 "Arabi... 267 2.4e-33 2
TAIR|locus:504955737 - symbol:AT3G21215 species:3702 "Ara... 289 1.8e-25 1
WB|WBGene00003172 - symbol:mec-8 species:6239 "Caenorhabd... 150 5.2e-20 2
UNIPROTKB|G5ECJ4 - symbol:mec-8 "Protein MEC-8" species:6... 150 5.2e-20 2
FB|FBgn0263995 - symbol:cpo "couch potato" species:7227 "... 153 9.6e-15 2
UNIPROTKB|Q6ZRY4 - symbol:RBPMS2 "RNA-binding protein wit... 175 2.9e-13 1
MGI|MGI:1919223 - symbol:Rbpms2 "RNA binding protein with... 175 2.9e-13 1
ZFIN|ZDB-GENE-040426-741 - symbol:rbpms2b "RNA binding pr... 174 3.9e-13 1
ZFIN|ZDB-GENE-040718-106 - symbol:rbpms2a "RNA binding pr... 173 5.0e-13 1
UNIPROTKB|Q9W6I1 - symbol:RBPMS "RNA-binding protein with... 172 6.6e-13 1
UNIPROTKB|E2QU21 - symbol:RBPMS2 "Uncharacterized protein... 172 6.6e-13 1
UNIPROTKB|F1P2M9 - symbol:RBPMS2 "Uncharacterized protein... 170 1.1e-12 1
UNIPROTKB|F1N2U8 - symbol:RBPMS2 "Uncharacterized protein... 170 1.1e-12 1
UNIPROTKB|Q9YGP5 - symbol:rbpms "RNA-binding protein with... 169 1.5e-12 1
UNIPROTKB|F1S0B2 - symbol:RBPMS2 "Uncharacterized protein... 168 2.0e-12 1
RGD|1561222 - symbol:Rbpms2 "RNA binding protein with mul... 168 2.0e-12 1
UNIPROTKB|F1NZ89 - symbol:RBPMS2 "Uncharacterized protein... 165 4.3e-12 1
UNIPROTKB|F1MAV3 - symbol:RBPMS "Uncharacterized protein"... 165 4.3e-12 1
UNIPROTKB|E2R5F7 - symbol:RBPMS "Uncharacterized protein"... 165 4.3e-12 1
UNIPROTKB|B4E3T4 - symbol:RBPMS "HCG2043421, isoform CRA_... 165 4.3e-12 1
UNIPROTKB|F5H357 - symbol:RBPMS "RNA-binding protein with... 165 4.3e-12 1
UNIPROTKB|Q93062 - symbol:RBPMS "RNA-binding protein with... 165 4.3e-12 1
UNIPROTKB|F1RX64 - symbol:RBPMS "Uncharacterized protein"... 165 4.3e-12 1
MGI|MGI:1334446 - symbol:Rbpms "RNA binding protein gene ... 165 4.3e-12 1
UNIPROTKB|F1NAP9 - symbol:RBPMS "RNA-binding protein with... 163 7.4e-12 1
POMBASE|SPCC16C4.07 - symbol:scw1 "RNA-binding protein Sc... 159 1.1e-11 2
RGD|1561067 - symbol:Rbpms "RNA binding protein with mult... 158 2.8e-11 1
UNIPROTKB|F1M7J8 - symbol:Rbpms "Protein Rbpms" species:1... 158 2.8e-11 1
UNIPROTKB|F1M9Y9 - symbol:Rbpms "Protein Rbpms" species:1... 158 2.8e-11 1
DICTYBASE|DDB_G0268988 - symbol:DDB_G0268988 "RNA-binding... 166 4.3e-10 1
ASPGD|ASPL0000063387 - symbol:AN7700 species:162425 "Emer... 170 4.5e-10 1
UNIPROTKB|H0YBU9 - symbol:RBPMS "RNA-binding protein with... 144 1.1e-09 1
POMBASE|SPCC320.07c - symbol:mde7 "RNA-binding protein Md... 128 2.2e-09 2
SGD|S000002383 - symbol:WHI4 "Putative RNA binding protei... 152 2.7e-09 2
UNIPROTKB|G5EH29 - symbol:MGCH7_ch7g848 "RNA binding prot... 162 3.9e-09 1
SGD|S000005141 - symbol:WHI3 "RNA binding protein that se... 147 5.9e-08 2
WB|WBGene00017929 - symbol:grld-1 species:6239 "Caenorhab... 98 1.0e-07 2
DICTYBASE|DDB_G0288391 - symbol:snrpB2 "U2 small nuclear ... 116 1.4e-06 2
ZFIN|ZDB-GENE-081104-82 - symbol:si:ch1073-335m2.2 "si:ch... 98 1.1e-05 2
TAIR|locus:2061976 - symbol:U1A "spliceosomal protein U1A... 125 1.1e-05 1
ASPGD|ASPL0000000406 - symbol:AN6501 species:162425 "Emer... 104 2.1e-05 2
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 103 3.9e-05 1
UNIPROTKB|A2Y0J7 - symbol:OsI_18512 "U1 small nuclear rib... 120 4.6e-05 1
UNIPROTKB|Q0DKM4 - symbol:LOC_Os05g06280 "U1 small nuclea... 120 4.6e-05 1
TAIR|locus:2135605 - symbol:AT4G12640 species:3702 "Arabi... 105 0.00016 2
TAIR|locus:2065742 - symbol:U2B'' "U2 small nuclear ribon... 113 0.00024 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 104 0.00035 2
CGD|CAL0002334 - symbol:WHI3 species:5476 "Candida albica... 89 0.00039 2
UNIPROTKB|I3L521 - symbol:I3L521 "Uncharacterized protein... 102 0.00045 1
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp... 102 0.00050 1
>TAIR|locus:2060015 [details] [associations]
symbol:AT2G42240 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000242657 UniGene:At.73056 EMBL:AK228665
IPI:IPI00570582 RefSeq:NP_001078040.1 ProteinModelPortal:Q0WQM7
SMR:Q0WQM7 EnsemblPlants:AT2G42240.2 GeneID:818824
KEGG:ath:AT2G42240 TAIR:At2g42240 OMA:CPTLFVA PhylomeDB:Q0WQM7
ProtClustDB:CLSN2699079 Genevestigator:Q0WQM7 Uniprot:Q0WQM7
Length = 302
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 152/260 (58%), Positives = 178/260 (68%)
Query: 55 YSASFPAYGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAV 114
Y + + G+ DEVRTLFVAGLPEDVKPREIYNLFREFPGYE+SHLRSS ++PFAFAV
Sbjct: 36 YLPTHVSIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSS-DGAKPFAFAV 94
Query: 115 FSDQQSALGAMYALN-------KGSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAF 167
FSD QSA+ M+ALN K STL+IDLAKSN +SKRSRTDD W S KK + +
Sbjct: 95 FSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWE-SLKKLKSWNT- 152
Query: 168 SRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGPKN 227
T + G GS PGM +SA+NTIGY QS G + S PS K
Sbjct: 153 ---TTESGFGSFQTPGMSSSAYNTIGYSPAQSQ-------GIANVAGRAPTSRKPS--KA 200
Query: 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALN 287
PC TLF+AN+GP CTE EL QVFS+C GFLKLKIQ TYG PVAFVDFQD S+ AL+
Sbjct: 201 ADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALH 260
Query: 288 NLQGTILYSSPTSDGIRLEF 307
LQGT+LYSS T + +RL++
Sbjct: 261 TLQGTVLYSSLTGEVLRLQY 280
>TAIR|locus:2091526 [details] [associations]
symbol:AT3G13700 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001307 UniGene:At.39361
OMA:APSANGH IPI:IPI00523019 RefSeq:NP_187983.1
ProteinModelPortal:B3H4P0 SMR:B3H4P0 PRIDE:B3H4P0
EnsemblPlants:AT3G13700.1 GeneID:820579 KEGG:ath:AT3G13700
TAIR:At3g13700 eggNOG:NOG298185 HOGENOM:HOG000242657
PhylomeDB:B3H4P0 ProtClustDB:CLSN2684800 ArrayExpress:B3H4P0
Genevestigator:B3H4P0 Uniprot:B3H4P0
Length = 296
Score = 267 (99.0 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 76/206 (36%), Positives = 104/206 (50%)
Query: 111 AFAVFSDQQSALGAMYALN-------KGSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARG 163
AFA F+ + AL AM LN GS L+I+LA+SNSR K + D + +
Sbjct: 97 AFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKERPGSGPYVVIDNRNKE 156
Query: 164 PSAFSRGTADLGIGS---VHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220
S +D G V PG +S T+S D+ S +A +
Sbjct: 157 ISKSQDDQSDEGDSDPDEVQEPGNSDSPKEN---DTTKSEA--DSEPDSKAPSANGHLEK 211
Query: 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTV 280
A G C+TLF+ANLGP CTE EL Q+ S+ PGF LKI++ G PVAF DF++
Sbjct: 212 ASEGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIE 271
Query: 281 SSTAALNNLQGTILYSSPTSDGIRLE 306
+T A+N+LQG +L SS G+ +E
Sbjct: 272 QATDAMNHLQGNLLSSSDRG-GMHIE 296
Score = 112 (44.5 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ 108
+ TLFV+GLP DVK REI+NLFR G+ES L+ + + Q
Sbjct: 36 INTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKYTGRGDQ 76
Score = 54 (24.1 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 271 VAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKS 310
VAF F + AA+N L G + + T + +E A+S
Sbjct: 96 VAFATFTSHRFALAAMNELNG-VKFDPQTGSNLHIELARS 134
>TAIR|locus:504955737 [details] [associations]
symbol:AT3G21215 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09012 eggNOG:NOG255497
HOGENOM:HOG000242657 EMBL:AF361632 EMBL:AY143892 EMBL:AK118175
EMBL:AK226266 EMBL:AK317062 IPI:IPI00534607 RefSeq:NP_683582.2
UniGene:At.27825 ProteinModelPortal:Q9ASW4 SMR:Q9ASW4 IntAct:Q9ASW4
PaxDb:Q9ASW4 PRIDE:Q9ASW4 EnsemblPlants:AT3G21215.1 GeneID:821675
KEGG:ath:AT3G21215 TAIR:At3g21215 InParanoid:Q9ASW4 OMA:EASQVNF
PhylomeDB:Q9ASW4 ProtClustDB:CLSN2680031 Genevestigator:Q9ASW4
Uniprot:Q9ASW4
Length = 339
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 89/269 (33%), Positives = 134/269 (49%)
Query: 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGA 124
YDE+RT+F+AGLP+DVK RE+ NL R PGYE+S + + + +P FA+FS Q A+ A
Sbjct: 55 YDELRTIFIAGLPDDVKERELLNLLRWLPGYEASQV--NFKGEKPMGFALFSTAQFAMAA 112
Query: 125 -------MYALNKGSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIG 177
++ S ++ ++AK N KR D D+ R R D
Sbjct: 113 KDTLQHMVFDAESKSVIHTEMAKKNLFVKRGIVGDS-NAYDQSKR-----LRTGGDC-TH 165
Query: 178 SVHMPGMGNSAFNTI-GYPH---TQSHENFDARGGSLITTAKFNNS---SAPSG--P-KN 227
SV+ P + + G PH + +D G +APS P +N
Sbjct: 166 SVYSPSPFHPPPPPVWGPPHGYMAPAPPPYDPYAGYHAPPVPMPTPPPIAAPSSYVPVQN 225
Query: 228 VT---PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTA 284
+ PC TLF+ NLG E+EL + S PGF ++KI V F++F+D S+T
Sbjct: 226 IKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATN 285
Query: 285 ALNNLQGTILYSSPTSDGIRLEFAKSRMG 313
+NLQG ++ SS S G+R++++K+ G
Sbjct: 286 VHHNLQGAVIPSSG-SIGMRIQYSKNPYG 313
>WB|WBGene00003172 [details] [associations]
symbol:mec-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0007638 "mechanosensory behavior"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0048644
"muscle organ morphogenesis" evidence=IGI;IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0031581 "hemidesmosome assembly"
evidence=IGI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002119 GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638
HSSP:P09012 GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084
PIR:T19360 RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 150 (57.9 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 38/93 (40%), Positives = 53/93 (56%)
Query: 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFA---FAVFSDQQSALG 123
+VRTLFV+GLP D KPRE+Y LFR GYE + L+ +++N +P + F F QQ A
Sbjct: 29 QVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQD 88
Query: 124 AMYALNK-------GSTLYIDLAKSNSRSKRSR 149
A L L ++LAKSN++ R +
Sbjct: 89 ARKMLQGVRFDPECAQVLRLELAKSNTKVARPK 121
Score = 147 (56.8 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 220 SAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDT 279
S + + + C+TLFVANL E L VF GF +L++ + G VAFV++ D
Sbjct: 216 SQQASQASTSACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDL 275
Query: 280 VSSTAALNNLQGTILYSSPTSDGIRLEFAKSRM 312
+T A+ +LQG + ++ G+R+E+A+++M
Sbjct: 276 QKATQAMISLQGFQITANDRG-GLRIEYARNKM 307
>UNIPROTKB|G5ECJ4 [details] [associations]
symbol:mec-8 "Protein MEC-8" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002119
GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638 HSSP:P09012
GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084 PIR:T19360
RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 150 (57.9 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 38/93 (40%), Positives = 53/93 (56%)
Query: 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFA---FAVFSDQQSALG 123
+VRTLFV+GLP D KPRE+Y LFR GYE + L+ +++N +P + F F QQ A
Sbjct: 29 QVRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQD 88
Query: 124 AMYALNK-------GSTLYIDLAKSNSRSKRSR 149
A L L ++LAKSN++ R +
Sbjct: 89 ARKMLQGVRFDPECAQVLRLELAKSNTKVARPK 121
Score = 147 (56.8 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 220 SAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDT 279
S + + + C+TLFVANL E L VF GF +L++ + G VAFV++ D
Sbjct: 216 SQQASQASTSACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSDL 275
Query: 280 VSSTAALNNLQGTILYSSPTSDGIRLEFAKSRM 312
+T A+ +LQG + ++ G+R+E+A+++M
Sbjct: 276 QKATQAMISLQGFQITANDRG-GLRIEYARNKM 307
>FB|FBgn0263995 [details] [associations]
symbol:cpo "couch potato" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS;IDA] [GO:0007422 "peripheral nervous system
development" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0007268 "synaptic
transmission" evidence=IMP] [GO:0042048 "olfactory behavior"
evidence=IMP] [GO:0022611 "dormancy process" evidence=IMP]
[GO:0035206 "regulation of hemocyte proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007275 GO:GO:0005634
GO:GO:0000166 GO:GO:0007268 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0042048 GO:GO:0035206 CTD:130749 EMBL:Z14311 EMBL:Z14312
EMBL:Z14974 EMBL:AY129455 EMBL:BT001569 PIR:A46230 PIR:S24761
RefSeq:NP_001014631.2 RefSeq:NP_001014632.2 RefSeq:NP_001163640.1
RefSeq:NP_001163641.1 RefSeq:NP_524844.5 RefSeq:NP_732282.5
RefSeq:NP_732283.4 RefSeq:NP_732284.4 UniGene:Dm.6154
ProteinModelPortal:Q01617 SMR:Q01617 IntAct:Q01617 MINT:MINT-335471
STRING:Q01617 PaxDb:Q01617 GeneID:45840 GeneID:8674070
KEGG:dme:Dmel_CG31243 KEGG:dme:Dmel_CG42457 FlyBase:FBgn0000363
eggNOG:NOG255204 InParanoid:Q01617 OrthoDB:EOG4H44N8 ChiTaRS:CPO
NextBio:838394 Bgee:Q01617 GermOnline:CG31243 GO:GO:0022611
Uniprot:Q01617
Length = 738
Score = 153 (58.9 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ---PFAFAVF------- 115
+EVRTLFV+GLP D KPRE+Y LFR + GYE S L+ +++N + P F F
Sbjct: 448 EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAE 507
Query: 116 SDQQSALGAMYALNKGSTLYIDLAKSNSRSKRSR 149
+ +Q G + + T+ ++ AKSN++ + +
Sbjct: 508 AAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPK 541
Score = 106 (42.4 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 165 SAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSG 224
+A + A G G+ SA T SH ++ + NN+S P
Sbjct: 635 AAAAAAAAGGGGGAATAAAAPQSAAATAAAAAAASHHHYLSSPALASPAGSTNNASHPGN 694
Query: 225 PKNVT--PCATLFVANLGPTCTEQELTQVFS 253
P+ PC+TLFVANLG +E EL +VFS
Sbjct: 695 PQIAANAPCSTLFVANLGQFVSEHELKEVFS 725
>UNIPROTKB|Q6ZRY4 [details] [associations]
symbol:RBPMS2 "RNA-binding protein with multiple splicing
2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG255204 CTD:348093 HOGENOM:HOG000017369 HOVERGEN:HBG069897
OrthoDB:EOG42RD8G EMBL:AY369207 EMBL:AK127873 IPI:IPI00238688
RefSeq:NP_919248.1 UniGene:Hs.436518 HSSP:P09012
ProteinModelPortal:Q6ZRY4 SMR:Q6ZRY4 STRING:Q6ZRY4
PhosphoSite:Q6ZRY4 DMDM:74762401 PaxDb:Q6ZRY4 PRIDE:Q6ZRY4
DNASU:348093 Ensembl:ENST00000300069 GeneID:348093 KEGG:hsa:348093
UCSC:uc002anq.3 GeneCards:GC15M065032 HGNC:HGNC:19098
neXtProt:NX_Q6ZRY4 PharmGKB:PA134871904 InParanoid:Q6ZRY4
OMA:KLTSRQP PhylomeDB:Q6ZRY4 ChiTaRS:RBPMS2 GenomeRNAi:348093
NextBio:99336 ArrayExpress:Q6ZRY4 Bgee:Q6ZRY4 CleanEx:HS_RBPMS2
Genevestigator:Q6ZRY4 Uniprot:Q6ZRY4
Length = 209
Score = 175 (66.7 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 47/125 (37%), Positives = 69/125 (55%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ + + QP F +F + A A
Sbjct: 28 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAK 85
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSRTDDEWTGSD-KKARGPSAFSRGTADLGIG 177
ALN TL ++ AK+N++ +S+ S+ A G +R DL +G
Sbjct: 86 NALNGIRFDPENPQTLRLEFAKANTKMAKSKLMATPNPSNVHPALGAHFIARDPYDL-MG 144
Query: 178 SVHMP 182
+ +P
Sbjct: 145 AALIP 149
>MGI|MGI:1919223 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919223 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204 CTD:348093
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
HSSP:P09012 OMA:KLTSRQP EMBL:AK144659 EMBL:AK156633 EMBL:BC021788
IPI:IPI00121434 RefSeq:NP_082306.2 UniGene:Mm.29148
ProteinModelPortal:Q8VC52 SMR:Q8VC52 PhosphoSite:Q8VC52
PaxDb:Q8VC52 PRIDE:Q8VC52 DNASU:71973 Ensembl:ENSMUST00000055844
GeneID:71973 KEGG:mmu:71973 UCSC:uc009qdt.1
GeneTree:ENSGT00500000044861 InParanoid:Q8VC52 NextBio:335098
Bgee:Q8VC52 CleanEx:MM_RBPMS2 Genevestigator:Q8VC52 Uniprot:Q8VC52
Length = 206
Score = 175 (66.7 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 39/91 (42%), Positives = 57/91 (62%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F +F + A A
Sbjct: 22 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAK 79
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +S+
Sbjct: 80 NALNGIRFDPENPQTLRLEFAKANTKMAKSK 110
>ZFIN|ZDB-GENE-040426-741 [details] [associations]
symbol:rbpms2b "RNA binding protein with multiple
splicing 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-741 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
GeneTree:ENSGT00500000044861 EMBL:BX663612 EMBL:CR354581
EMBL:BC048876 EMBL:BC066414 EMBL:AB080736 IPI:IPI00498043
RefSeq:NP_956553.1 UniGene:Dr.81683 STRING:Q7ZUL7
Ensembl:ENSDART00000006619 GeneID:393229 KEGG:dre:393229 CTD:393229
OMA:TDIKPRE NextBio:20814293 Uniprot:Q7ZUL7
Length = 200
Score = 174 (66.3 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 17 EEVRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRSGAEAAK 74
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +S+
Sbjct: 75 NALNGVRFDPENPQTLRLEFAKANTKMAKSK 105
>ZFIN|ZDB-GENE-040718-106 [details] [associations]
symbol:rbpms2a "RNA binding protein with multiple
splicing 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040718-106 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:BX296538
EMBL:CU570688 EMBL:BC076171 EMBL:BC152178 IPI:IPI00486507
RefSeq:NP_001002409.1 UniGene:Dr.82744 STRING:Q6DH13
Ensembl:ENSDART00000067514 GeneID:436682 KEGG:dre:436682 CTD:436682
InParanoid:Q6DH13 NextBio:20831125 Uniprot:Q6DH13
Length = 199
Score = 173 (66.0 bits), Expect = 5.0e-13, P = 5.0e-13
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 17 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRSGAEAAK 74
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +S+
Sbjct: 75 NALNGIRFDPESPQTLRLEFAKANTKMAKSK 105
>UNIPROTKB|Q9W6I1 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0010862 "positive
regulation of pathway-restricted SMAD protein phosphorylation"
evidence=ISS] [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
eggNOG:NOG255204 GO:GO:0008143 EMBL:AF129933 IPI:IPI00591826
RefSeq:NP_990200.1 UniGene:Gga.2695 ProteinModelPortal:Q9W6I1
GeneID:395678 KEGG:gga:395678 CTD:348093 HOGENOM:HOG000017369
HOVERGEN:HBG069897 InParanoid:Q9W6I1 OrthoDB:EOG42RD8G
NextBio:20815750 Uniprot:Q9W6I1
Length = 200
Score = 172 (65.6 bits), Expect = 6.6e-13, P = 6.6e-13
Identities = 39/91 (42%), Positives = 56/91 (61%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 19 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAK 76
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +S+
Sbjct: 77 NALNGIRFDPENPQTLRLEFAKANTKMAKSK 107
>UNIPROTKB|E2QU21 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:348093
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AAEX03016208
RefSeq:XP_853385.2 Ensembl:ENSCAFT00000027080 GeneID:610746
KEGG:cfa:610746 NextBio:20896295 Uniprot:E2QU21
Length = 214
Score = 172 (65.6 bits), Expect = 6.6e-13, P = 6.6e-13
Identities = 38/91 (41%), Positives = 57/91 (62%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F +F + A A
Sbjct: 32 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAK 89
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 90 NALNGIRFDPENPQTLRLEFAKANTKMAKNK 120
>UNIPROTKB|F1P2M9 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00591826
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AADN02051088
Ensembl:ENSGALT00000040332 Uniprot:F1P2M9
Length = 198
Score = 170 (64.9 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMY 126
EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 18 EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKN 75
Query: 127 ALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +S+
Sbjct: 76 ALNGIRFDPENPQTLRLEFAKANTKMAKSK 105
>UNIPROTKB|F1N2U8 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:DAAA02028733 IPI:IPI00688079
Ensembl:ENSBTAT00000014659 Uniprot:F1N2U8
Length = 203
Score = 170 (64.9 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 38/90 (42%), Positives = 56/90 (62%)
Query: 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMY 126
EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F +F + A A
Sbjct: 23 EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKN 80
Query: 127 ALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 81 ALNGIRFDPENPQTLRLEFAKANTKMAKNK 110
>UNIPROTKB|Q9YGP5 [details] [associations]
symbol:rbpms "RNA-binding protein with multiple splicing"
species:8355 "Xenopus laevis" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=ISS]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOVERGEN:HBG069897 CTD:11030 EMBL:AF107889
EMBL:BC097507 RefSeq:NP_001081864.1 UniGene:Xl.449
ProteinModelPortal:Q9YGP5 GeneID:398092 KEGG:xla:398092
Uniprot:Q9YGP5
Length = 196
Score = 169 (64.5 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 38/91 (41%), Positives = 57/91 (62%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F ++ A A
Sbjct: 17 EEVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAK 74
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 75 NALNGIRFDPENPQTLRLEFAKANTKMAKNK 105
>UNIPROTKB|F1S0B2 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:CU633631
Ensembl:ENSSSCT00000005024 Uniprot:F1S0B2
Length = 195
Score = 168 (64.2 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 38/94 (40%), Positives = 57/94 (60%)
Query: 63 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSAL 122
G +VRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F +F + A
Sbjct: 10 GLCPQVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAE 67
Query: 123 GAMYALN-------KGSTLYIDLAKSNSRSKRSR 149
A ALN TL ++ AK+N++ +++
Sbjct: 68 AAKNALNGIRFDPENPQTLRLEFAKANTKMAKNK 101
>RGD|1561222 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1561222 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:KLTSRQP GeneTree:ENSGT00500000044861
IPI:IPI00766399 Ensembl:ENSRNOT00000021337 UCSC:RGD:1561222
ArrayExpress:F1M9N3 Uniprot:F1M9N3
Length = 181
Score = 168 (64.2 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA 127
VRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F +F + A A A
Sbjct: 1 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 58
Query: 128 LN-------KGSTLYIDLAKSNSRSKRSR 149
LN TL ++ AK+N++ +S+
Sbjct: 59 LNGIRFDPENPQTLRLEFAKANTKMAKSK 87
>UNIPROTKB|F1NZ89 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 EMBL:AADN02051088 IPI:IPI00819063
Ensembl:ENSGALT00000003715 Uniprot:F1NZ89
Length = 180
Score = 165 (63.1 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA 127
VRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A A
Sbjct: 1 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKNA 58
Query: 128 LN-------KGSTLYIDLAKSNSRSKRSR 149
LN TL ++ AK+N++ +S+
Sbjct: 59 LNGIRFDPENPQTLRLEFAKANTKMAKSK 87
>UNIPROTKB|F1MAV3 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:DAAA02060452 IPI:IPI00722097
UniGene:Bt.106824 Ensembl:ENSBTAT00000047899 Uniprot:F1MAV3
Length = 219
Score = 165 (63.1 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAK 78
Query: 126 YALNK-------GSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 79 NALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109
>UNIPROTKB|E2R5F7 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=IEA] [GO:0010862 "positive regulation
of pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 CTD:11030 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AAEX03010423 EMBL:AAEX03010424
RefSeq:XP_532815.3 ProteinModelPortal:E2R5F7 PRIDE:E2R5F7
Ensembl:ENSCAFT00000010500 GeneID:475599 KEGG:cfa:475599
NextBio:20851407 Uniprot:E2R5F7
Length = 219
Score = 165 (63.1 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAK 78
Query: 126 YALNK-------GSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 79 NALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109
>UNIPROTKB|B4E3T4 [details] [associations]
symbol:RBPMS "HCG2043421, isoform CRA_c" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000017369 HOVERGEN:HBG069897 UniGene:Hs.334587
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 EMBL:AK304858 IPI:IPI00908913 SMR:B4E3T4
STRING:B4E3T4 Ensembl:ENST00000517860 UCSC:uc011lba.1
Uniprot:B4E3T4
Length = 224
Score = 165 (63.1 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAK 78
Query: 126 YALNK-------GSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 79 NALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109
>UNIPROTKB|F5H357 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00414709 HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945
EMBL:AC011204 EMBL:AC109329 ProteinModelPortal:F5H357 SMR:F5H357
PRIDE:F5H357 Ensembl:ENST00000538486 ArrayExpress:F5H357
Bgee:F5H357 Uniprot:F5H357
Length = 153
Score = 165 (63.1 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAK 78
Query: 126 YALNK-------GSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 79 NALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109
>UNIPROTKB|Q93062 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IDA]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IDA] [GO:0008143 "poly(A) RNA binding"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0006396 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOGENOM:HOG000017369 HOVERGEN:HBG069897 EMBL:D84110
EMBL:D84107 EMBL:D84108 EMBL:D84109 EMBL:D84111 EMBL:BC003608
IPI:IPI00004045 IPI:IPI00101800 IPI:IPI00216935 IPI:IPI00216936
IPI:IPI00414709 PIR:JC6127 RefSeq:NP_001008710.1
RefSeq:NP_001008711.1 RefSeq:NP_001008712.1 RefSeq:NP_006858.1
UniGene:Hs.334587 PDB:1BNY PDBsum:1BNY ProteinModelPortal:Q93062
SMR:Q93062 IntAct:Q93062 MINT:MINT-1434067 STRING:Q93062
DMDM:13124469 PaxDb:Q93062 PRIDE:Q93062 Ensembl:ENST00000287771
Ensembl:ENST00000320203 Ensembl:ENST00000339877
Ensembl:ENST00000397323 GeneID:11030 KEGG:hsa:11030 UCSC:uc003xib.3
UCSC:uc003xic.1 UCSC:uc003xid.1 CTD:11030 GeneCards:GC08P030242
HGNC:HGNC:19097 MIM:601558 neXtProt:NX_Q93062 PharmGKB:PA134985584
eggNOG:NOG292253 OMA:PEVWGPY OrthoDB:EOG4NGGNV ChiTaRS:RBPMS
GenomeRNAi:11030 NextBio:41912 ArrayExpress:Q93062 Bgee:Q93062
CleanEx:HS_RBPMS Genevestigator:Q93062 GermOnline:ENSG00000157110
Uniprot:Q93062
Length = 196
Score = 165 (63.1 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAK 78
Query: 126 YALNK-------GSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 79 NALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109
>UNIPROTKB|F1RX64 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:CU914373 EMBL:FP236445
Ensembl:ENSSSCT00000017254 Uniprot:F1RX64
Length = 215
Score = 165 (63.1 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAK 78
Query: 126 YALNK-------GSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 79 NALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109
>MGI|MGI:1334446 [details] [associations]
symbol:Rbpms "RNA binding protein gene with multiple
splicing" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=ISO] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1334446 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143 HOGENOM:HOG000017369
HOVERGEN:HBG069897 CTD:11030 eggNOG:NOG292253 OrthoDB:EOG4NGGNV
ChiTaRS:RBPMS EMBL:AF148511 EMBL:AK012265 EMBL:AK012586
EMBL:AK041118 EMBL:AC123616 EMBL:AC127551 EMBL:AC162523
EMBL:BC030397 IPI:IPI00122127 IPI:IPI00125806 IPI:IPI00132006
RefSeq:NP_001036139.1 RefSeq:NP_001036140.1 RefSeq:NP_062707.1
UniGene:Mm.323997 ProteinModelPortal:Q9WVB0 SMR:Q9WVB0
STRING:Q9WVB0 PaxDb:Q9WVB0 PRIDE:Q9WVB0 Ensembl:ENSMUST00000033994
Ensembl:ENSMUST00000033995 Ensembl:ENSMUST00000053251 GeneID:19663
KEGG:mmu:19663 NextBio:296958 CleanEx:MM_RBPMS
Genevestigator:Q9WVB0 GermOnline:ENSMUSG00000031586 Uniprot:Q9WVB0
Length = 197
Score = 165 (63.1 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAK 78
Query: 126 YALNK-------GSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 79 NALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109
>UNIPROTKB|F1NAP9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AADN02016141 IPI:IPI00588016
Ensembl:ENSGALT00000016744 Uniprot:F1NAP9
Length = 196
Score = 163 (62.4 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 38/90 (42%), Positives = 55/90 (61%)
Query: 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMY 126
+VRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 22 QVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKN 79
Query: 127 ALNK-------GSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +S+
Sbjct: 80 ALNGIRFDPEIPQTLRLEFAKANTKMAKSK 109
>POMBASE|SPCC16C4.07 [details] [associations]
symbol:scw1 "RNA-binding protein Scw1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0032955 "regulation of
barrier septum assembly" evidence=IGI] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPCC16C4.07 GO:GO:0005737 GO:GO:0032995 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032955 OrthoDB:EOG42592X PIR:T41097
RefSeq:NP_587917.1 ProteinModelPortal:O74452 STRING:O74452
EnsemblFungi:SPCC16C4.07.1 GeneID:2539358 KEGG:spo:SPCC16C4.07
eggNOG:NOG255497 NextBio:20800523 Uniprot:O74452
Length = 561
Score = 159 (61.0 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 217 NNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDF 276
N + A P PC T++V NL P+ +E+EL +FS G+ +L ++ P+ FV+F
Sbjct: 415 NTNPADQNP----PCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEF 470
Query: 277 QDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKSRMGM 314
++ + AL NLQG L SS GIRL F+K+ +G+
Sbjct: 471 ENIPYAMEALKNLQGVCL-SSSIKGGIRLSFSKNPLGV 507
Score = 66 (28.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 31/112 (27%), Positives = 46/112 (41%)
Query: 53 GSYSASFPAYG-SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS-STQNSQPF 110
G +++ P G + L + LP D+ PRE F S L S N
Sbjct: 93 GGLASAPPKVGFGFPRYYALRIEDLPRDLTPREFLCTFLFATNVVSVELNPVSVDNEVAH 152
Query: 111 AFAVFSDQQSALGAMYALNKGSTLY--IDLAKSNSRSKRSRTD--DEWTGSD 158
AVFS + +A A L S +Y + ++ K S+T+ DE GS+
Sbjct: 153 GLAVFSSRDAAASARDTL-LSSDVYSACSMIILDNYRKGSQTNLSDETEGSE 203
>RGD|1561067 [details] [associations]
symbol:Rbpms "RNA binding protein with multiple splicing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA;ISO] [GO:0008143 "poly(A) RNA binding"
evidence=IEA;ISO] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA;ISO]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561067
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00959368
Ensembl:ENSRNOT00000068011 Uniprot:F2Z3S5
Length = 110
Score = 158 (60.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA 127
VRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A A
Sbjct: 1 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNA 58
Query: 128 LNK-------GSTLYIDLAKSNSRSKRSR 149
LN TL ++ AK+N++ +++
Sbjct: 59 LNGIRFDPEIPQTLRLEFAKANTKMAKNK 87
Score = 95 (38.5 bits), Expect = 0.00029, P = 0.00029
Identities = 29/84 (34%), Positives = 39/84 (46%)
Query: 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGT 292
TLFV+ L +EL +F G+ I+ T PV FV F + AA N L G
Sbjct: 3 TLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNG- 61
Query: 293 ILYSSPTSDGIRLEFAKSRMGMPR 316
I + +RLEFAK+ M +
Sbjct: 62 IRFDPEIPQTLRLEFAKANTKMAK 85
>UNIPROTKB|F1M7J8 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00767399
Ensembl:ENSRNOT00000046138 ArrayExpress:F1M7J8 Uniprot:F1M7J8
Length = 175
Score = 158 (60.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA 127
VRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A A
Sbjct: 1 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNA 58
Query: 128 LNK-------GSTLYIDLAKSNSRSKRSR 149
LN TL ++ AK+N++ +++
Sbjct: 59 LNGIRFDPEIPQTLRLEFAKANTKMAKNK 87
>UNIPROTKB|F1M9Y9 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0010862
"positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143
GeneTree:ENSGT00500000044861 IPI:IPI00364663
Ensembl:ENSRNOT00000017883 ArrayExpress:F1M9Y9 Uniprot:F1M9Y9
Length = 198
Score = 158 (60.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA 127
VRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A A
Sbjct: 1 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNA 58
Query: 128 LNK-------GSTLYIDLAKSNSRSKRSR 149
LN TL ++ AK+N++ +++
Sbjct: 59 LNGIRFDPEIPQTLRLEFAKANTKMAKNK 87
>DICTYBASE|DDB_G0268988 [details] [associations]
symbol:DDB_G0268988 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0268988 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000004 eggNOG:NOG255497 RefSeq:XP_646953.2
ProteinModelPortal:Q55ER7 EnsemblProtists:DDB0233676 GeneID:8616643
KEGG:ddi:DDB_G0268988 OMA:EFATMAM Uniprot:Q55ER7
Length = 356
Score = 166 (63.5 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 55/173 (31%), Positives = 89/173 (51%)
Query: 146 KRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHM-PGMGNSAF--NTIGYPHTQSHEN 202
KR R++D + S + S +S ++D S P +S++ T P + S+ +
Sbjct: 182 KRIRSEDYYPRSSSSSSSSSLYS--SSDRYHDSYRSTPSSSSSSYLIPTSSIPLSSSNYH 239
Query: 203 FDARGGSLITTAKFNNSSA--PSGPKNVT--PCATLFVANLGPTCTEQELTQVFSKCPGF 258
SL +++ ++ SA P + T PC+TLFV+NL TE+EL+ +F GF
Sbjct: 240 LPPSSTSL-SSSHYHGGSALPPQSSISTTGMPCSTLFVSNLPKDVTERELSILFRFMRGF 298
Query: 259 LKLKIQSTYGP-PVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKS 310
+ +++ + G P+ F DF DT SS AL LQG + +S S I +EF K+
Sbjct: 299 VGIRLINKEGKLPMCFCDFIDTQSSMFALEFLQGFRMDASDISSSISIEFDKA 351
>ASPGD|ASPL0000063387 [details] [associations]
symbol:AN7700 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001304 EMBL:AACD01000130
OrthoDB:EOG42592X eggNOG:NOG255497 RefSeq:XP_680969.1
ProteinModelPortal:Q5AVI0 EnsemblFungi:CADANIAT00000831
GeneID:2869448 KEGG:ani:AN7700.2 HOGENOM:HOG000174215 OMA:NSVKGGI
Uniprot:Q5AVI0
Length = 628
Score = 170 (64.9 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 50/150 (33%), Positives = 75/150 (50%)
Query: 168 SRGTADLGI---GSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSG 224
S G+A + I S + P M N A G+P+ H TA+ + +A
Sbjct: 360 SGGSAHMAIPTPSSAYTPPM-NGAVGNPGFPYNSQH------------TARHSFPAANPN 406
Query: 225 PKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTA 284
N PC TL+V NL P E+EL +FSK G+ +L ++ P+ FV+F+D ++
Sbjct: 407 DMN-PPCNTLYVGNLPPDTQEEELKALFSKQRGYKRLCFRNKQNGPMCFVEFEDVRTAGK 465
Query: 285 ALNNLQGTILYSSPTSDGIRLEFAKSRMGM 314
LN L G L S+ GIRL F+K+ +G+
Sbjct: 466 TLNELYGYKL-SNSIKTGIRLSFSKNPLGV 494
>UNIPROTKB|H0YBU9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 Ensembl:ENST00000519359 Uniprot:H0YBU9
Length = 119
Score = 144 (55.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 71 LFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNK 130
LFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A ALN
Sbjct: 2 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNALNG 59
Query: 131 -------GSTLYIDLAKSNSRSKRSR 149
TL ++ AK+N++ +++
Sbjct: 60 IRFDPEIPQTLRLEFAKANTKMAKNK 85
>POMBASE|SPCC320.07c [details] [associations]
symbol:mde7 "RNA-binding protein Mde7" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IEP] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPCC320.07c GO:GO:0007126 GO:GO:0005737
GO:GO:0008380 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG12793
PIR:T41304 RefSeq:NP_587722.1 ProteinModelPortal:O59784
EnsemblFungi:SPCC320.07c.1 GeneID:2538704 KEGG:spo:SPCC320.07c
OrthoDB:EOG42592X NextBio:20799889 Uniprot:O59784
Length = 761
Score = 128 (50.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNN 288
+PC T++V NL E++L FSK G+ +L + P+ FV+F++ + A+
Sbjct: 599 SPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAKAMEK 658
Query: 289 LQGTILYSSPTSDGIRLEFAKSRMGM 314
+QG L GIRL ++K+ +G+
Sbjct: 659 MQGAAL-DDKIKGGIRLSYSKNPLGV 683
Score = 83 (34.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/81 (32%), Positives = 36/81 (44%)
Query: 53 GSYSASFPAYGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAF 112
GS S S + + V GLP+D RE+ +F GY+ S + S +N A
Sbjct: 204 GSNSLSEASNDDLESSIIQIVGGLPDDFDDRELSGIFTFCEGYDFSKIES--ENGHRKAI 261
Query: 113 AVFSDQQSALGAMYALNKGST 133
F + +AL A LN ST
Sbjct: 262 VYFRNAIAALKAKNMLNASST 282
Score = 41 (19.5 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 165 SAFSRGTADLGIGSVHMPGMGN----SAFNTIGYPHTQSHENF 203
+++ +GTA+ G+ + N SA+N+ + T S NF
Sbjct: 102 NSYLQGTAESNSGNFANNSISNNCWNSAYNSNSFEGTGSSPNF 144
>SGD|S000002383 [details] [associations]
symbol:WHI4 "Putative RNA binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008361 "regulation of cell size"
evidence=IGI] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000002383 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 GO:GO:0008361
GO:GO:0003723 OrthoDB:EOG42592X HSSP:P09012 eggNOG:NOG255497
GeneTree:ENSGT00530000067542 HOGENOM:HOG000074699 EMBL:Z74272
PIR:S67787 RefSeq:NP_010057.1 ProteinModelPortal:Q07655 SMR:Q07655
DIP:DIP-4321N IntAct:Q07655 MINT:MINT-531190 STRING:Q07655
PaxDb:Q07655 PeptideAtlas:Q07655 EnsemblFungi:YDL224C GeneID:851302
KEGG:sce:YDL224C CYGD:YDL224c NextBio:968310 Genevestigator:Q07655
GermOnline:YDL224C Uniprot:Q07655
Length = 649
Score = 152 (58.6 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 41/108 (37%), Positives = 62/108 (57%)
Query: 222 PSGPKNVTP-CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS---TYGP-------P 270
P+ P + P C TL+V NL P TEQEL Q+FS GF +L ++ ++G P
Sbjct: 522 PANPADQNPPCNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGHGHGP 581
Query: 271 VAFVDFQDTVSSTAALNNLQGTIL-YSSPTSD---GIRLEFAKSRMGM 314
+ FV+F+D +T AL L G+ L + P+ + GIRL F+K+ +G+
Sbjct: 582 ICFVEFEDVSFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKNPLGV 629
Score = 53 (23.7 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 34/142 (23%), Positives = 58/142 (40%)
Query: 71 LFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNK 130
L + LP+D+ RE Y +F G S L+ + +PF +D + + +
Sbjct: 103 LLLRNLPKDITLRECYCIFSLATGVSSIELKRDDR--EPF-----NDNEKVVVVKFGSLS 155
Query: 131 GSTLYIDLAKSNSR----SKRSRTDDEWTGSDKKARGPSAF----SRGTADLG-----IG 177
T Y ++ S S S R+ + +++ + P +F S GT + +
Sbjct: 156 LVTHYANILNSKSEIFGPSFPFRSHIDVV--NEQTQLPVSFQEHVSSGTTNSSPKNYQLS 213
Query: 178 SVHMPGMGNSAFNTIGYPHTQS 199
S + N +FNTI Y T S
Sbjct: 214 SSAQNEIQNQSFNTISYGKTSS 235
>UNIPROTKB|G5EH29 [details] [associations]
symbol:MGCH7_ch7g848 "RNA binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM000230 EMBL:CM001237 RefSeq:XP_003720628.1
ProteinModelPortal:G5EH29 EnsemblFungi:MGG_03053T0 GeneID:2682606
KEGG:mgr:MGG_03053 Uniprot:G5EH29
Length = 622
Score = 162 (62.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 48/146 (32%), Positives = 73/146 (50%)
Query: 170 GTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGPKNVT 229
G + +G S H M + N G P T + GG +S P P +
Sbjct: 365 GPSPVGQLSAHTNTMSPTMLNGAGTP-TMGY-----LGGHRFP----GHSFPPVNPADQN 414
Query: 230 P-CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNN 288
P C TL+V NL +E+EL FSK G+ +L ++ P+ FV+F+D +T AL+
Sbjct: 415 PPCNTLYVGNLPIDTSEEELKATFSKQRGYKRLCFRTKQNGPMCFVEFEDVSFATKALHE 474
Query: 289 LQGTILYSSPTSDGIRLEFAKSRMGM 314
L G +L++S GIRL F+K+ +G+
Sbjct: 475 LYGHMLHNS-VKGGIRLSFSKNPLGV 499
>SGD|S000005141 [details] [associations]
symbol:WHI3 "RNA binding protein that sequesters CLN3 mRNA in
cytoplasmic foci" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;ISS;IMP;IDA] [GO:0008361
"regulation of cell size" evidence=IGI;IMP] [GO:0007124
"pseudohyphal growth" evidence=IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0001403 "invasive growth in response to glucose
limitation" evidence=IMP] [GO:0051220 "cytoplasmic sequestering of
protein" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005141
GO:GO:0005737 GO:GO:0051220 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006947 GO:GO:0008361 GO:GO:0003723 GO:GO:0007049
GO:GO:0001403 GO:GO:0007124 EMBL:X78898 OrthoDB:EOG42592X
eggNOG:NOG255497 EMBL:U01095 EMBL:Z71473 PIR:S50734
RefSeq:NP_014202.1 ProteinModelPortal:P34761 SMR:P34761
IntAct:P34761 MINT:MINT-4500279 STRING:P34761 PaxDb:P34761
PeptideAtlas:P34761 EnsemblFungi:YNL197C GeneID:855524
KEGG:sce:YNL197C CYGD:YNL197c GeneTree:ENSGT00530000067542
HOGENOM:HOG000074699 OMA:QRSRFSF NextBio:979559
Genevestigator:P34761 GermOnline:YNL197C Uniprot:P34761
Length = 661
Score = 147 (56.8 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 41/104 (39%), Positives = 57/104 (54%)
Query: 222 PSGPKNVTP-CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS--------TYGPPVA 272
P+ P + P C TL+V NL TEQEL Q+FS GF +L ++ ++GP +
Sbjct: 527 PANPADQNPPCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGP-MC 585
Query: 273 FVDFQDTVSSTAALNNLQGTILYSSPTSD--GIRLEFAKSRMGM 314
FV+F D +T AL L G L S S GIRL F+K+ +G+
Sbjct: 586 FVEFDDVSFATRALAELYGRQLPRSTVSSKGGIRLSFSKNPLGV 629
Score = 46 (21.3 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 26/104 (25%), Positives = 44/104 (42%)
Query: 86 YNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNKGSTLY-IDLAKSNSR 144
Y L + S+ + +S N P F QQ MY +N+ +T + A+ +S
Sbjct: 433 YGLMSSQSQHISNMVNTSDMNITPQKQNRFM-QQPQPEHMYPVNQSNTPQKVPPARLSS- 490
Query: 145 SKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSA 188
S+ S ++ T G ++ S+ ADL + +P N A
Sbjct: 491 SRNSHKNNSTTSLSSNITGSASISQ--ADLSL-LARIPPPANPA 531
Score = 45 (20.9 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 63 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNS 107
GSY +L ++ + +D+ RE Y +F G +S L+ +S
Sbjct: 100 GSY----SLKLSNVAKDITLRECYAIFALAEGVKSIELQKKNSSS 140
>WB|WBGene00017929 [details] [associations]
symbol:grld-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 EMBL:FO080227 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GeneTree:ENSGT00530000063730 RefSeq:NP_741283.1
ProteinModelPortal:H2KYB8 SMR:H2KYB8 PRIDE:H2KYB8
EnsemblMetazoa:F29C4.7a.1 EnsemblMetazoa:F29C4.7a.2 GeneID:176827
KEGG:cel:CELE_F29C4.7 CTD:176827 WormBase:F29C4.7a OMA:ERNDCAR
Uniprot:H2KYB8
Length = 520
Score = 98 (39.6 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 234 LFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTI 293
LFV LG C ++ L + F + GF++ I +G P A+V +++T +S A +L+G
Sbjct: 253 LFVGGLGSWCDKEILQKAFGEF-GFVE-NIDYDHGQPYAYVVYENTHTSQEACRSLRGAC 310
Query: 294 LYSSPTSDGIRLEFAKSRMGMPRK 317
+ S + I +++AK P K
Sbjct: 311 I--SKGNHPIMVDYAKDLTAQPEK 332
Score = 96 (38.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 66 DEV-RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGA 124
DE RTLFV +P DVK REI ++F E E +++ +AF +F A+ A
Sbjct: 165 DEATRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 224
>DICTYBASE|DDB_G0288391 [details] [associations]
symbol:snrpB2 "U2 small nuclear ribonucleoprotein B"
species:44689 "Dictyostelium discoideum" [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0288391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GenomeReviews:CM000154_GR EMBL:AAFI02000111
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HSSP:P09012 KO:K11094 RefSeq:XP_636725.1 ProteinModelPortal:Q54J05
STRING:Q54J05 EnsemblProtists:DDB0233135 GeneID:8626602
KEGG:ddi:DDB_G0288391 OMA:IFGQFPG ProtClustDB:CLSZ2429888
Uniprot:Q54J05
Length = 241
Score = 116 (45.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 212 TTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLK-IQSTYGPP 270
T+ +N + P++ P TLFV NL C L+ +FS+ GF ++ ++S G
Sbjct: 147 TSPTTSNGTVSLQPRDDPPNKTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMVESKKG-- 204
Query: 271 VAFVDFQDTVSSTAALNNLQ 290
+AF++F+D + S A+ NLQ
Sbjct: 205 IAFIEFEDEIKSGFAMTNLQ 224
Score = 53 (23.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 32/112 (28%), Positives = 48/112 (42%)
Query: 69 RTLFVAGLPEDVKPREIYN----LFREF-PGYESSHLRSSTQNSQPFAFAVFSDQQSALG 123
+TL+V L E + +++ LF ++ P E +S Q AF VF D SA
Sbjct: 12 QTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQ--AFIVFKDITSASN 69
Query: 124 AMYALNKGSTL----YIDLAKSNS-----------RSKRSRTDDEWTGSDKK 160
A+ +N + L I KS S KR R +++ GS+KK
Sbjct: 70 ALREMNGFNFLDRPMKIQYCKSKSDAVSKLDGTYMEKKREREENDKKGSNKK 121
>ZFIN|ZDB-GENE-081104-82 [details] [associations]
symbol:si:ch1073-335m2.2 "si:ch1073-335m2.2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-081104-82 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:CU652212 EMBL:CU693473 IPI:IPI00932066
Ensembl:ENSDART00000110807 ArrayExpress:F1Q618 Bgee:F1Q618
Uniprot:F1Q618
Length = 3103
Score = 98 (39.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 40/119 (33%), Positives = 52/119 (43%)
Query: 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSH-LRSSTQNSQPFAFAVFSDQQSALGAM 125
E R L+V LPE V+ +I F+ F ES LR AF F D +SA A
Sbjct: 4 ETRHLWVGNLPEHVREEKIVEHFKRFGRVESVKVLRKRGSEGGVAAFVDFVDIKSAQKAH 63
Query: 126 YALNK-GST-LYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMP 182
A+NK G L D + S R ++ T S R + FSR T +G V+ P
Sbjct: 64 NAVNKMGDRDLRTDYNEPGSVPSAVRGLEDATPSSSHTREVAGFSRAT----VGPVYGP 118
Score = 93 (37.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG-PPVAFVDFQDTVSSTAALNNLQG 291
TLF+ NL T Q+L VF + + + I+ G P AFV + D S A+ + G
Sbjct: 437 TLFIGNLEKTTNYQQLLDVFQRFGEIVDIDIKRVNGVPQYAFVQYSDIASVCKAIKKMDG 496
Query: 292 TILYSSPTSDGIRLEFAKS 310
L ++ + ++L F KS
Sbjct: 497 EYLGTNRLN--VQLGFGKS 513
>TAIR|locus:2061976 [details] [associations]
symbol:U1A "spliceosomal protein U1A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0009651 "response to salt stress"
evidence=IGI] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=ISS;IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:AC002535 GO:GO:0017069 GO:GO:0005685 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P09012 EMBL:Z49991 EMBL:AY052663
EMBL:AY059875 EMBL:AY093341 EMBL:AY142070 IPI:IPI00542976
PIR:S59118 RefSeq:NP_182280.1 UniGene:At.200
ProteinModelPortal:Q39244 SMR:Q39244 IntAct:Q39244 STRING:Q39244
PaxDb:Q39244 PRIDE:Q39244 EnsemblPlants:AT2G47580.1 GeneID:819371
KEGG:ath:AT2G47580 GeneFarm:4533 TAIR:At2g47580
HOGENOM:HOG000217519 InParanoid:Q39244 KO:K11091 OMA:ATNAMRT
PhylomeDB:Q39244 ProtClustDB:CLSN2683617 Genevestigator:Q39244
Uniprot:Q39244
Length = 250
Score = 125 (49.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 64/233 (27%), Positives = 99/233 (42%)
Query: 69 RTLFVAGLPEDVKPREIYN----LFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGA 124
+T+++ L E VK E+ +F +F G L T + A+ VF + +SA A
Sbjct: 18 QTIYINNLNEKVKLDELKKSLNAVFSQF-GKILEILAFKTFKHKGQAWVVFDNTESASTA 76
Query: 125 MYALNK----GSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPS-AFSRGTADLGIGSV 179
+ +N + I AK+ S ++ D + +K+ R + D S
Sbjct: 77 IAKMNNFPFYDKEMRIQYAKTKS-DVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHDST 135
Query: 180 HMPGMG-NSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGPKNVTPCATLFVAN 238
M GM NSA+ + Y GG K N AP+ P N+ LFV N
Sbjct: 136 QM-GMPMNSAYPGV-YGAAPPLSQVPYPGGM-----KPNMPEAPAPPNNI-----LFVQN 183
Query: 239 LGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQG 291
L T L +F + GF ++++ P +AFV+F D + ST A+ LQG
Sbjct: 184 LPHETTPMVLQMLFCQYQGFKEVRMIEAK-PGIAFVEFADEMQSTVAMQGLQG 235
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 104 (41.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 35/103 (33%), Positives = 47/103 (45%)
Query: 215 KFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKL-KI---QSTYGPP 270
+ N +SA K+V A LFV NL P TEQ L FS+ + L K+ S
Sbjct: 85 RVNKASADK-QKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDDSNLSKG 143
Query: 271 VAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKSRMG 313
FV F D SS AA+ N+ G L + S ++ + K G
Sbjct: 144 YGFVSFADFESSDAAIANMNGQYLMNKQVS--VQYAYKKDGKG 184
Score = 62 (26.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALG 123
D+ T+++ L E V ++ L + + HL TQ+ Q + F F+ ++ A
Sbjct: 10 DKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEY 69
Query: 124 AMYALNKGSTLY---IDLAKSNSRSKRS 148
A +N G LY I + K+++ ++S
Sbjct: 70 ASRIMN-GIRLYGKPIRVNKASADKQKS 96
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 103 (41.3 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKI-QSTYGPP--VAFVDFQDTVSSTAALNNL 289
TLFV NL TE+ L ++F + +K+KI + G P AFV+F+ VS A+N L
Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 290 QGTILYSSPTSDGIRLEFAKSRMGMPRK 317
G LY P I+++F + MP K
Sbjct: 71 NGIKLYGRP----IKIQFRS--VVMPHK 92
>UNIPROTKB|A2Y0J7 [details] [associations]
symbol:OsI_18512 "U1 small nuclear ribonucleoprotein A"
species:39946 "Oryza sativa Indica Group" [GO:0005685 "U1 snRNP"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0000398 EMBL:CM000130 GO:GO:0017069
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 ProteinModelPortal:A2Y0J7 STRING:A2Y0J7
Gramene:A2Y0J7 Uniprot:A2Y0J7
Length = 253
Score = 120 (47.3 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 56/230 (24%), Positives = 96/230 (41%)
Query: 70 TLFVAGLPEDVKPREIYN----LFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
T+++ L E +K E+ +F +F G L T + A+ VF D SA A+
Sbjct: 24 TIYINNLNEKIKLEELKKSLRAVFSQF-GKILDVLAFKTLKHKGQAWVVFEDVASATEAL 82
Query: 126 YALNK----GSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHM 181
++ + I AK+ S ++ D + +++ R + V
Sbjct: 83 KSMQDFPFHNKPMRIQYAKTKS-DIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDVSQ 141
Query: 182 PGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGPKNVTPCATLFVANLGP 241
G+G +A YP G ++ F + P+ + P LFV NL
Sbjct: 142 VGLGVNA-----YPGVY--------GAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPH 188
Query: 242 TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQG 291
T L +F + PGF ++++ P +AFV++ D +TAA+N+LQG
Sbjct: 189 ETTPMMLQMLFCQYPGFKEVRMVEAK-PGIAFVEYGDEGQATAAMNHLQG 237
>UNIPROTKB|Q0DKM4 [details] [associations]
symbol:LOC_Os05g06280 "U1 small nuclear ribonucleoprotein
A" species:39947 "Oryza sativa Japonica Group" [GO:0005685 "U1
snRNP" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 EMBL:AP008211 EMBL:CM000142 GO:GO:0000398
GO:GO:0017069 GO:GO:0005685 PANTHER:PTHR10501 KO:K11091
ProtClustDB:CLSN2683617 RefSeq:NP_001054685.1 UniGene:Os.9766
ProteinModelPortal:Q0DKM4 GeneID:4337846 KEGG:osa:4337846
Gramene:Q0DKM4 Uniprot:Q0DKM4
Length = 253
Score = 120 (47.3 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 56/230 (24%), Positives = 96/230 (41%)
Query: 70 TLFVAGLPEDVKPREIYN----LFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
T+++ L E +K E+ +F +F G L T + A+ VF D SA A+
Sbjct: 24 TIYINNLNEKIKLEELKKSLRAVFSQF-GKILDVLAFKTLKHKGQAWVVFEDVASATEAL 82
Query: 126 YALNK----GSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHM 181
++ + I AK+ S ++ D + +++ R + V
Sbjct: 83 KSMQDFPFHNKPMRIQYAKTKS-DIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDVSQ 141
Query: 182 PGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGPKNVTPCATLFVANLGP 241
G+G +A YP G ++ F + P+ + P LFV NL
Sbjct: 142 VGLGVNA-----YPGVY--------GAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPH 188
Query: 242 TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQG 291
T L +F + PGF ++++ P +AFV++ D +TAA+N+LQG
Sbjct: 189 ETTPMMLQMLFCQYPGFKEVRMVEAK-PGIAFVEYGDEGQATAAMNHLQG 237
>TAIR|locus:2135605 [details] [associations]
symbol:AT4G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 IPI:IPI00546459 RefSeq:NP_193001.2
UniGene:At.46444 ProteinModelPortal:F4JRD9 SMR:F4JRD9 PRIDE:F4JRD9
EnsemblPlants:AT4G12640.1 GeneID:826877 KEGG:ath:AT4G12640
OMA:ERNYEAG Uniprot:F4JRD9
Length = 823
Score = 105 (42.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 34/107 (31%), Positives = 52/107 (48%)
Query: 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL 128
R L+V LP + RE+ + F F ES + Q + +AF F+ + A A+ +L
Sbjct: 23 RHLWVGNLPHGILERELADRFLRFGELESL----AFQPGRSYAFVNFNHDEDAFAAIESL 78
Query: 129 N----KGSTLYIDLAKSNSRSKRSRTDDEWTGSDKK--ARGPSAFSR 169
G+ L I+ AK+ S SRTDD + +++ ARG S R
Sbjct: 79 QGFPLSGNPLRIEFAKAEKSSTGSRTDDIYRHDEQRSAARGSSFVQR 125
Score = 62 (26.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 24/93 (25%), Positives = 42/93 (45%)
Query: 219 SSAPSGPKNVTPCATLFVANLGPTCTEQELTQ-VFSKCPGFLKLKIQSTYGPPVAFVDFQ 277
S + +N P L++ + L + VFS K+ + G AFV F+
Sbjct: 138 SKSKMNDRNAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFP--GRSYAFVQFR 195
Query: 278 DTVSSTAALNNLQGTILYSSPTSDGIRLEFAKS 310
+ +++ A +LQG L+ +P + + FAKS
Sbjct: 196 NLMAACKAKESLQGK-LFGNPR---VHICFAKS 224
>TAIR|locus:2065742 [details] [associations]
symbol:U2B'' "U2 small nuclear ribonucleoprotein B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0015030 "Cajal body"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 EMBL:AC002338
GO:GO:0017069 GO:GO:0005686 GO:GO:0000354 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:BT003068 EMBL:AK227609 EMBL:AY087401
IPI:IPI00546965 PIR:C84706 RefSeq:NP_180585.1 UniGene:At.19782
ProteinModelPortal:O22922 SMR:O22922 IntAct:O22922 STRING:O22922
PaxDb:O22922 PRIDE:O22922 EnsemblPlants:AT2G30260.1 GeneID:817576
KEGG:ath:AT2G30260 GeneFarm:4539 TAIR:At2g30260 InParanoid:O22922
KO:K11094 OMA:TTANKKP PhylomeDB:O22922 Genevestigator:O22922
Uniprot:O22922
Length = 232
Score = 113 (44.8 bits), Expect = 0.00024, P = 0.00024
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 219 SSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQD 278
S PSG + + P LF+ NL T L +F + PGF ++++ P +AFV+++D
Sbjct: 145 SFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAK-PGIAFVEYED 203
Query: 279 TVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309
V ++ A+ LQG + +P + + + FAK
Sbjct: 204 DVQASIAMQPLQGFKI--TPQNPMV-ISFAK 231
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 104 (41.7 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 33/97 (34%), Positives = 45/97 (46%)
Query: 214 AKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAF 273
A + N A G + T+FV L PT E+ L QVFS + +KI + G F
Sbjct: 265 ATYQNPQATQGESDPNN-TTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVA--GKRCGF 321
Query: 274 VDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKS 310
V F S+ AL++L GT L IRL + +S
Sbjct: 322 VQFGTRASAEQALSSLNGTQL----GGQSIRLSWGRS 354
Score = 52 (23.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 70 TLFVAGLPEDVKPREIYNLFRE-FPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMY 126
T+FV L DV + F+ + + + + T S+ + F F+D+ L AM
Sbjct: 177 TIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMT 236
Query: 127 ALN 129
+N
Sbjct: 237 EMN 239
>CGD|CAL0002334 [details] [associations]
symbol:WHI3 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007124 "pseudohyphal growth"
evidence=IEA] [GO:0001403 "invasive growth in response to glucose
limitation" evidence=IEA] [GO:0051220 "cytoplasmic sequestering of
protein" evidence=IEA] [GO:0008361 "regulation of cell size"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0002334 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000020 EMBL:AACQ01000016 eggNOG:NOG255497
RefSeq:XP_720821.1 RefSeq:XP_721334.1 RefSeq:XP_888839.1
ProteinModelPortal:Q5AH44 STRING:Q5AH44 GeneID:3636991
GeneID:3637479 GeneID:3703850 KEGG:cal:CaO19.13847
KEGG:cal:CaO19.6494 KEGG:cal:CaO19_6494 Uniprot:Q5AH44
Length = 704
Score = 89 (36.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 222 PSGPKNVTP-CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS 265
P+ P + P C TL+V NL P TE EL +FS GF +L ++
Sbjct: 535 PANPADQNPPCNTLYVGNLPPDATESELRTLFSPQKGFRRLSFRT 579
Score = 74 (31.1 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 270 PVAFVDFQDTVSSTAALNNLQGTILYSSPTSD----GIRLEFAKSRMGM 314
P+ FV+F+D +T AL L G L P GIRL F+K+ +G+
Sbjct: 605 PMCFVEFEDVAHATRALAELYGRAL-PRPNGGNGKGGIRLSFSKNPLGV 652
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 102 (41.0 bits), Expect = 0.00045, P = 0.00045
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKI-QSTYGPP--VAFVDFQDTVSSTAALNNL 289
TLFV NL TE+ L ++F + +K+KI + G P AFV+F+ VS A+N L
Sbjct: 8 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLL 67
Query: 290 QGTILYSSPTSDGIRLEFAKSRMGMPR 316
G LY P I+++F P+
Sbjct: 68 NGIKLYGRP----IKIQFRSGSSHAPQ 90
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 102 (41.0 bits), Expect = 0.00050, P = 0.00050
Identities = 31/87 (35%), Positives = 45/87 (51%)
Query: 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKI-QSTYGPP--VAFVDFQDTVSSTAALNNL 289
TLFV NL TE+ L ++F + +K+KI + G P AFV+F+ VS A+N L
Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 290 QGTILYSSPTSDGIRLEFAKSRMGMPR 316
G LY P I+++F P+
Sbjct: 71 NGIKLYGRP----IKIQFRSGSSHAPQ 93
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 319 284 0.00085 115 3 11 23 0.41 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 51
No. of states in DFA: 604 (64 KB)
Total size of DFA: 193 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.26u 0.13s 24.39t Elapsed: 00:00:01
Total cpu time: 24.27u 0.13s 24.40t Elapsed: 00:00:01
Start: Fri May 10 17:45:14 2013 End: Fri May 10 17:45:15 2013