BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020954
(319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VC52|RBPS2_MOUSE RNA-binding protein with multiple splicing 2 OS=Mus musculus
GN=Rbpms2 PE=1 SV=1
Length = 206
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 9/91 (9%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F +F + A A
Sbjct: 22 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAK 79
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +S+
Sbjct: 80 NALNGIRFDPENPQTLRLEFAKANTKMAKSK 110
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGT 292
TLFV+ L +EL +F G+ I+ T PV FV F + AA N L G
Sbjct: 26 TLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKNALNG- 84
Query: 293 ILYSSPTSDGIRLEFAKSRMGMPR 316
I + +RLEFAK+ M +
Sbjct: 85 IRFDPENPQTLRLEFAKANTKMAK 108
>sp|Q6ZRY4|RBPS2_HUMAN RNA-binding protein with multiple splicing 2 OS=Homo sapiens
GN=RBPMS2 PE=2 SV=1
Length = 209
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ + + QP F +F + A A
Sbjct: 28 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAK 85
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +S+
Sbjct: 86 NALNGIRFDPENPQTLRLEFAKANTKMAKSK 116
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGT 292
TLFV+ L +EL +F G+ I+ T PV FV F + AA N L G
Sbjct: 32 TLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQPVGFVIFDSRAGAEAAKNALNG- 90
Query: 293 ILYSSPTSDGIRLEFAKSRMGMPR 316
I + +RLEFAK+ M +
Sbjct: 91 IRFDPENPQTLRLEFAKANTKMAK 114
>sp|Q9W6I1|RBPMS_CHICK RNA-binding protein with multiple splicing OS=Gallus gallus
GN=RBPMS PE=2 SV=1
Length = 200
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 19 EEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAK 76
Query: 126 YALN-------KGSTLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +S+
Sbjct: 77 NALNGIRFDPENPQTLRLEFAKANTKMAKSK 107
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGT 292
TLFV+ L +EL +F G+ I+ T PV FV F + AA N L G
Sbjct: 23 TLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRAGAEAAKNALNG- 81
Query: 293 ILYSSPTSDGIRLEFAKSRMGMPR 316
I + +RLEFAK+ M +
Sbjct: 82 IRFDPENPQTLRLEFAKANTKMAK 105
>sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS
PE=1 SV=1
Length = 196
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAK 78
Query: 126 YALNKG-------STLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 79 NALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGT 292
TLFV+ L +EL +F G+ I+ T PV FV F + AA N L G
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNG- 83
Query: 293 ILYSSPTSDGIRLEFAKSRMGMPR 316
I + +RLEFAK+ M +
Sbjct: 84 IRFDPEIPQTLRLEFAKANTKMAK 107
>sp|Q9WVB0|RBPMS_MOUSE RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms
PE=2 SV=2
Length = 197
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 9/91 (9%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
+EVRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F + A A
Sbjct: 21 EEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAK 78
Query: 126 YALNKG-------STLYIDLAKSNSRSKRSR 149
ALN TL ++ AK+N++ +++
Sbjct: 79 NALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGT 292
TLFV+ L +EL +F G+ I+ T PV FV F + AA N L G
Sbjct: 25 TLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNG- 83
Query: 293 ILYSSPTSDGIRLEFAKSRMGMPR 316
I + +RLEFAK+ M +
Sbjct: 84 IRFDPEIPQTLRLEFAKANTKMAK 107
>sp|Q9YGP5|RBPMS_XENLA RNA-binding protein with multiple splicing OS=Xenopus laevis
GN=rbpms PE=2 SV=1
Length = 196
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 9/89 (10%)
Query: 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA 127
VRTLFV+GLP D+KPRE+Y LFR F GYE S ++ +++ QP F F ++ A A A
Sbjct: 19 VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKNA 76
Query: 128 LN-------KGSTLYIDLAKSNSRSKRSR 149
LN TL ++ AK+N++ +++
Sbjct: 77 LNGIRFDPENPQTLRLEFAKANTKMAKNK 105
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGT 292
TLFV+ L +EL +F G+ I+ T PV FV F + + AA N L G
Sbjct: 21 TLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDNRAGAEAAKNALNG- 79
Query: 293 ILYSSPTSDGIRLEFAKSRMGMPR 316
I + +RLEFAK+ M +
Sbjct: 80 IRFDPENPQTLRLEFAKANTKMAK 103
>sp|Q01617|CPO_DROME Protein couch potato OS=Drosophila melanogaster GN=cpo PE=2 SV=3
Length = 738
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 10/92 (10%)
Query: 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQ---PFAFAVF------- 115
+EVRTLFV+GLP D KPRE+Y LFR + GYE S L+ +++N + P F F
Sbjct: 448 EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAE 507
Query: 116 SDQQSALGAMYALNKGSTLYIDLAKSNSRSKR 147
+ +Q G + + T+ ++ AKSN++ +
Sbjct: 508 AAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSK 539
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 217 NNSSAPSGPKNVT--PCATLFVANLGPTCTEQELTQVFSKC--PGFLKLKIQ 264
NN+S P P+ PC+TLFVANLG +E EL +VFS +LKL Q
Sbjct: 687 NNASHPGNPQIAANAPCSTLFVANLGQFVSEHELKEVFSSHGNSNWLKLLHQ 738
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFL--KLKIQSTYGP---PVAFVDFQDTVS 281
N TLFV+ L +EL +F G+ LK+ S G PV FV F
Sbjct: 446 NEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAG 505
Query: 282 STAALNNLQGTILYSSPTSDGIRLEFAKSRMGMPR 316
+ AA +LQG + + IRLEFAKS + +
Sbjct: 506 AEAAKQDLQG-VRFDPDMPQTIRLEFAKSNTKVSK 539
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNL 289
PC T++V NL P+ +E+EL +FS G+ +L ++ P+ FV+F++ + AL NL
Sbjct: 424 PCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNL 483
Query: 290 QGTILYSSPTSDGIRLEFAKSRMGM 314
QG L SS GIRL F+K+ +G+
Sbjct: 484 QGVCL-SSSIKGGIRLSFSKNPLGV 507
>sp|Q07655|WHI4_YEAST Protein WHI4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI4 PE=1 SV=1
Length = 649
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 14/99 (14%)
Query: 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGP----------PVAFVDFQDT 279
PC TL+V NL P TEQEL Q+FS GF +L ++ P+ FV+F+D
Sbjct: 531 PCNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGHGHGPICFVEFEDV 590
Query: 280 VSSTAALNNLQGTIL-YSSPTSD---GIRLEFAKSRMGM 314
+T AL L G+ L + P+ + GIRL F+K+ +G+
Sbjct: 591 SFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKNPLGV 629
>sp|P34761|WHI3_YEAST Protein WHI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI3 PE=1 SV=1
Length = 661
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS--------TYGPPVAFVDFQDTVS 281
PC TL+V NL TEQEL Q+FS GF +L ++ ++G P+ FV+F D
Sbjct: 536 PCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHG-PMCFVEFDDVSF 594
Query: 282 STAALNNLQGTILYSSPTSD--GIRLEFAKSRMGM 314
+T AL L G L S S GIRL F+K+ +G+
Sbjct: 595 ATRALAELYGRQLPRSTVSSKGGIRLSFSKNPLGV 629
>sp|O59784|MDE7_SCHPO RNA-binding protein mde7 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mde7 PE=4 SV=1
Length = 761
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNN 288
+PC T++V NL E++L FSK G+ +L + P+ FV+F++ + A+
Sbjct: 599 SPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAKAMEK 658
Query: 289 LQGTILYSSPTSDGIRLEFAKSRMGM 314
+QG L GIRL ++K+ +G+
Sbjct: 659 MQGAAL-DDKIKGGIRLSYSKNPLGV 683
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 72 FVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNKG 131
V GLP+D RE+ +F GY+ S + S +N A F + +AL A LN
Sbjct: 223 IVGGLPDDFDDRELSGIFTFCEGYDFSKIES--ENGHRKAIVYFRNAIAALKAKNMLNAS 280
Query: 132 ST 133
ST
Sbjct: 281 ST 282
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 245 EQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALN--NLQGTILYSSPTSDG 302
++EL+ +F+ C G+ KI+S G A V F++ +++ A N N T ++ D
Sbjct: 233 DRELSGIFTFCEGYDFSKIESENGHRKAIVYFRNAIAALKAKNMLNASSTNNFTIIQRDV 292
Query: 303 IRLEFAKSRMGMP 315
+R + + G+P
Sbjct: 293 VRQQENEYHKGIP 305
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 97/242 (40%), Gaps = 48/242 (19%)
Query: 70 TLFVAGLPEDVKPREIYN----LFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
T+++ L E +K E+ +F +F G L T + A+ VF D SA A+
Sbjct: 24 TIYINNLNEKIKLEELKKSLRAVFSQF-GKILDVLAFKTLKHKGQAWVVFEDVASATEAL 82
Query: 126 YALN----KGSTLYIDLAKSNS------------RSKRSRTDDEWTGSDKKARGPSAFSR 169
++ + I AK+ S R +R R D++ K+ +
Sbjct: 83 KSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQ-----HH 137
Query: 170 GTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGPKNVT 229
+ +G+G PG+ G ++ F + P+ +
Sbjct: 138 DVSQVGLGVNAYPGV---------------------YGAPPLSQLPFAGAQKVMMPEIIV 176
Query: 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNL 289
P LFV NL T L +F + PGF ++++ P +AFV++ D +TAA+N+L
Sbjct: 177 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEA-KPGIAFVEYGDEGQATAAMNHL 235
Query: 290 QG 291
QG
Sbjct: 236 QG 237
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 97/242 (40%), Gaps = 48/242 (19%)
Query: 70 TLFVAGLPEDVKPREIYN----LFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125
T+++ L E +K E+ +F +F G L T + A+ VF D SA A+
Sbjct: 24 TIYINNLNEKIKLEELKKSLRAVFSQF-GKILDVLAFKTLKHKGQAWVVFEDVASATEAL 82
Query: 126 YALN----KGSTLYIDLAKSNS------------RSKRSRTDDEWTGSDKKARGPSAFSR 169
++ + I AK+ S R +R R D++ K+ +
Sbjct: 83 KSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQ-----HH 137
Query: 170 GTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGPKNVT 229
+ +G+G PG+ G ++ F + P+ +
Sbjct: 138 DVSQVGLGVNAYPGV---------------------YGAPPLSQLPFAGAQKVMMPEIIV 176
Query: 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNL 289
P LFV NL T L +F + PGF ++++ P +AFV++ D +TAA+N+L
Sbjct: 177 PNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEA-KPGIAFVEYGDEGQATAAMNHL 235
Query: 290 QG 291
QG
Sbjct: 236 QG 237
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 97/243 (39%), Gaps = 51/243 (20%)
Query: 69 RTLFVAGLPEDV-KPREIYNLFREFPGY----ESSHLRSSTQNSQPFAFAVFSDQQSALG 123
+TL+V L E + K + I L F Y E +S Q AF VF D SA
Sbjct: 12 QTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQ--AFIVFKDITSASN 69
Query: 124 AMYALNKGSTL----YIDLAKSNS-----------RSKRSRTDDEWTGSDKKARGPSAFS 168
A+ +N + L I KS S KR R +++ GS+KK
Sbjct: 70 ALREMNGFNFLDRPMKIQYCKSKSDAVSKLDGTYMEKKREREENDKKGSNKKQ------D 123
Query: 169 RGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGPKNV 228
R + PG S + T+ +N + P++
Sbjct: 124 RKSTGQQQQQQKRPGAPTST--------------------TSTTSPTTSNGTVSLQPRDD 163
Query: 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLK-IQSTYGPPVAFVDFQDTVSSTAALN 287
P TLFV NL C L+ +FS+ GF ++ ++S G +AF++F+D + S A+
Sbjct: 164 PPNKTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMVESKKG--IAFIEFEDEIKSGFAMT 221
Query: 288 NLQ 290
NLQ
Sbjct: 222 NLQ 224
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 49/245 (20%)
Query: 69 RTLFVAGLPEDVKPREIYN----LFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGA 124
+T+++ L E VK E+ +F +F G L T + A+ VF + +SA A
Sbjct: 18 QTIYINNLNEKVKLDELKKSLNAVFSQF-GKILEILAFKTFKHKGQAWVVFDNTESASTA 76
Query: 125 MYALNK----GSTLYIDLAKSNS------------RSKRSRTDDEWTGSDKKARGPSAFS 168
+ +N + I AK+ S R KR R +++ G KK + +
Sbjct: 77 IAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHHDSTQ 136
Query: 169 RGTADLGIGSVHMPGMGNSA--FNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGPK 226
G + + S + PG+ +A + + YP GG K N AP+ P
Sbjct: 137 MG---MPMNSAY-PGVYGAAPPLSQVPYP-----------GG-----MKPNMPEAPAPPN 176
Query: 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAAL 286
N+ LFV NL T L +F + GF ++++ P +AFV+F D + ST A+
Sbjct: 177 NI-----LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEA-KPGIAFVEFADEMQSTVAM 230
Query: 287 NNLQG 291
LQG
Sbjct: 231 QGLQG 235
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 215 KFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKL-----KIQSTYGP 269
K N +SA KN+ A +FV NL P E+ L FS L++ + S
Sbjct: 85 KVNKASAHE--KNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSK 142
Query: 270 PVAFVDFQDTVSSTAALNNLQGTIL 294
AF++F +S AL + G L
Sbjct: 143 GFAFINFASFEASDTALEAMNGQFL 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,634,191
Number of Sequences: 539616
Number of extensions: 7240413
Number of successful extensions: 120754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 1096
Number of HSP's that attempted gapping in prelim test: 54176
Number of HSP's gapped (non-prelim): 31445
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)