Query 020954
Match_columns 319
No_of_seqs 391 out of 2015
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:28:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.7E-33 3.6E-38 250.9 27.2 166 64-314 103-278 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-31 3.5E-36 242.8 26.3 242 67-312 88-350 (352)
3 KOG0117 Heterogeneous nuclear 100.0 1.1E-32 2.3E-37 239.9 17.1 234 69-318 84-338 (506)
4 KOG0148 Apoptosis-promoting RN 100.0 2.2E-32 4.8E-37 223.8 16.2 174 68-314 62-241 (321)
5 TIGR01645 half-pint poly-U bin 100.0 9.8E-32 2.1E-36 251.5 21.1 172 66-313 105-286 (612)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.9E-31 4E-36 242.4 21.4 162 67-313 2-173 (352)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 2E-30 4.3E-35 242.5 17.0 233 68-314 58-310 (578)
8 KOG0144 RNA-binding protein CU 100.0 2.9E-30 6.3E-35 223.8 14.9 171 63-316 29-211 (510)
9 TIGR01622 SF-CC1 splicing fact 100.0 3.2E-29 6.9E-34 235.4 21.8 173 64-311 85-266 (457)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.7E-28 7.9E-33 228.2 28.7 196 66-311 273-480 (481)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.3E-28 7E-33 228.6 28.3 232 68-311 96-351 (481)
12 TIGR01628 PABP-1234 polyadenyl 100.0 2.9E-29 6.2E-34 241.1 19.5 158 70-312 2-168 (562)
13 KOG0145 RNA-binding protein EL 100.0 1.1E-28 2.5E-33 201.0 17.4 168 64-316 37-214 (360)
14 TIGR01628 PABP-1234 polyadenyl 100.0 8.8E-29 1.9E-33 237.7 18.7 177 67-312 177-365 (562)
15 KOG0145 RNA-binding protein EL 100.0 1.8E-28 3.9E-33 199.8 17.2 223 66-312 125-359 (360)
16 KOG0131 Splicing factor 3b, su 100.0 1.2E-27 2.6E-32 185.3 13.9 166 64-315 5-181 (203)
17 KOG1457 RNA binding protein (c 100.0 1.6E-26 3.4E-31 184.5 19.4 235 63-305 29-283 (284)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.3E-26 1.2E-30 216.4 26.3 185 64-311 171-375 (509)
19 TIGR01622 SF-CC1 splicing fact 99.9 7.3E-26 1.6E-30 212.6 25.3 234 68-310 186-447 (457)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.7E-26 1.4E-30 215.7 24.5 186 66-310 293-501 (509)
21 KOG0127 Nucleolar protein fibr 99.9 4.2E-26 9.2E-31 203.2 16.7 183 69-312 6-197 (678)
22 KOG0146 RNA-binding protein ET 99.9 1.7E-26 3.7E-31 189.0 13.1 245 67-315 18-369 (371)
23 KOG0109 RNA-binding protein LA 99.9 1.3E-26 2.8E-31 191.9 11.0 145 69-312 3-151 (346)
24 KOG0127 Nucleolar protein fibr 99.9 1.1E-24 2.4E-29 194.3 20.1 237 68-311 117-378 (678)
25 KOG0144 RNA-binding protein CU 99.9 4.6E-24 1E-28 185.4 15.5 77 68-144 124-208 (510)
26 KOG0123 Polyadenylate-binding 99.9 3.3E-23 7.2E-28 185.8 16.6 148 69-313 2-155 (369)
27 KOG4206 Spliceosomal protein s 99.9 2.4E-22 5.2E-27 162.1 19.1 206 67-310 8-221 (221)
28 KOG0148 Apoptosis-promoting RN 99.9 9.3E-23 2E-27 167.5 11.5 142 64-316 2-147 (321)
29 TIGR01645 half-pint poly-U bin 99.9 2.4E-20 5.3E-25 175.2 26.8 76 67-142 203-284 (612)
30 KOG0110 RNA-binding protein (R 99.9 3E-22 6.6E-27 184.1 13.2 164 71-312 518-694 (725)
31 KOG0124 Polypyrimidine tract-b 99.9 1.7E-22 3.7E-27 172.3 9.6 168 68-311 113-290 (544)
32 KOG0123 Polyadenylate-binding 99.8 2.5E-20 5.4E-25 167.3 14.2 163 69-311 77-246 (369)
33 KOG0105 Alternative splicing f 99.8 3E-19 6.6E-24 139.0 17.9 169 67-296 5-177 (241)
34 KOG0147 Transcriptional coacti 99.8 2E-20 4.4E-25 167.8 11.8 227 69-309 279-526 (549)
35 KOG0147 Transcriptional coacti 99.8 8.3E-21 1.8E-25 170.3 8.2 179 61-312 172-359 (549)
36 KOG4205 RNA-binding protein mu 99.8 2E-19 4.4E-24 156.1 11.1 166 67-314 5-179 (311)
37 KOG1190 Polypyrimidine tract-b 99.8 9.3E-18 2E-22 145.5 17.8 189 68-311 297-491 (492)
38 KOG0110 RNA-binding protein (R 99.8 8.3E-18 1.8E-22 155.2 16.0 200 67-309 384-596 (725)
39 KOG1190 Polypyrimidine tract-b 99.8 2.7E-17 6E-22 142.6 18.2 219 67-312 149-374 (492)
40 PLN03134 glycine-rich RNA-bind 99.8 1.3E-17 2.8E-22 130.9 12.8 81 230-314 33-117 (144)
41 KOG4212 RNA-binding protein hn 99.7 3.1E-16 6.7E-21 137.1 19.4 224 65-298 41-285 (608)
42 KOG0106 Alternative splicing f 99.7 7.7E-18 1.7E-22 137.5 8.9 161 69-306 2-166 (216)
43 KOG1548 Transcription elongati 99.7 1.3E-16 2.7E-21 135.9 16.5 193 66-309 132-350 (382)
44 PLN03134 glycine-rich RNA-bind 99.7 4.8E-17 1E-21 127.7 11.4 78 65-142 31-114 (144)
45 KOG1456 Heterogeneous nuclear 99.7 3.8E-15 8.2E-20 128.0 23.3 240 63-313 115-365 (494)
46 KOG0124 Polypyrimidine tract-b 99.7 1.8E-15 4E-20 129.6 17.5 76 66-141 208-289 (544)
47 KOG4212 RNA-binding protein hn 99.7 5.4E-15 1.2E-19 129.5 20.6 76 228-308 533-608 (608)
48 KOG4211 Splicing factor hnRNP- 99.6 8.6E-15 1.9E-19 130.3 16.6 155 69-297 11-172 (510)
49 PF00076 RRM_1: RNA recognitio 99.6 1E-15 2.2E-20 105.3 8.2 67 234-304 1-70 (70)
50 TIGR01659 sex-lethal sex-letha 99.6 1.5E-15 3.2E-20 135.9 11.2 81 227-311 103-187 (346)
51 KOG0125 Ataxin 2-binding prote 99.6 1E-15 2.2E-20 129.5 9.3 82 231-316 96-179 (376)
52 KOG0107 Alternative splicing f 99.6 9.9E-16 2.1E-20 118.6 8.0 77 231-312 10-86 (195)
53 PLN03120 nucleic acid binding 99.6 2.1E-15 4.6E-20 126.5 10.3 75 231-310 4-79 (260)
54 PF00076 RRM_1: RNA recognitio 99.6 4.5E-15 9.8E-20 102.1 7.8 65 71-135 1-70 (70)
55 TIGR01648 hnRNP-R-Q heterogene 99.6 9.8E-15 2.1E-19 137.4 12.6 70 67-142 232-307 (578)
56 KOG0149 Predicted RNA-binding 99.6 1.7E-15 3.8E-20 122.9 6.3 74 68-141 12-90 (247)
57 KOG0122 Translation initiation 99.6 4E-14 8.6E-19 115.4 13.2 78 65-142 186-269 (270)
58 KOG0121 Nuclear cap-binding pr 99.6 8.7E-15 1.9E-19 107.5 7.3 76 230-309 35-114 (153)
59 KOG0122 Translation initiation 99.6 1.1E-14 2.4E-19 118.6 8.6 78 230-311 188-269 (270)
60 PLN03213 repressor of silencin 99.6 1.6E-14 3.5E-19 128.4 9.8 78 230-311 9-88 (759)
61 KOG0120 Splicing factor U2AF, 99.6 3.6E-14 7.8E-19 129.5 12.3 182 65-309 286-490 (500)
62 COG0724 RNA-binding proteins ( 99.6 1E-13 2.2E-18 121.3 14.5 166 68-294 115-292 (306)
63 KOG0121 Nuclear cap-binding pr 99.5 1.4E-14 3.1E-19 106.3 7.2 74 67-140 35-114 (153)
64 KOG0125 Ataxin 2-binding prote 99.5 5E-14 1.1E-18 119.4 11.5 81 64-144 92-176 (376)
65 KOG1456 Heterogeneous nuclear 99.5 3.5E-12 7.5E-17 110.0 22.7 196 65-311 284-491 (494)
66 KOG0114 Predicted RNA-binding 99.5 4.4E-14 9.5E-19 99.9 8.7 75 231-309 18-93 (124)
67 PF14259 RRM_6: RNA recognitio 99.5 3.5E-14 7.5E-19 97.8 7.3 64 234-297 1-67 (70)
68 PLN03120 nucleic acid binding 99.5 7.5E-14 1.6E-18 117.3 10.1 72 68-141 4-79 (260)
69 PLN03121 nucleic acid binding 99.5 1.2E-13 2.6E-18 114.1 10.1 75 230-309 4-79 (243)
70 PF13893 RRM_5: RNA recognitio 99.5 1E-13 2.3E-18 90.9 7.4 56 248-308 1-56 (56)
71 KOG0107 Alternative splicing f 99.5 8.2E-14 1.8E-18 108.1 7.7 76 66-144 8-87 (195)
72 PF14259 RRM_6: RNA recognitio 99.5 1.5E-13 3.4E-18 94.5 8.0 65 71-135 1-70 (70)
73 smart00362 RRM_2 RNA recogniti 99.5 2.3E-13 5E-18 93.4 8.6 70 233-306 1-72 (72)
74 PLN03213 repressor of silencin 99.5 1.5E-13 3.3E-18 122.3 9.4 78 65-144 7-90 (759)
75 KOG0111 Cyclophilin-type pepti 99.5 4.8E-14 1E-18 113.1 5.6 84 230-317 9-96 (298)
76 KOG0130 RNA-binding protein RB 99.5 1.3E-13 2.8E-18 102.2 7.4 81 229-313 70-154 (170)
77 KOG0105 Alternative splicing f 99.5 9.9E-14 2.1E-18 108.4 6.5 77 231-311 6-83 (241)
78 KOG4207 Predicted splicing fac 99.5 1.5E-13 3.2E-18 109.3 6.6 79 64-142 9-93 (256)
79 KOG0113 U1 small nuclear ribon 99.4 4.2E-13 9.1E-18 112.5 9.4 80 61-140 94-179 (335)
80 KOG4206 Spliceosomal protein s 99.4 4.1E-13 8.8E-18 108.9 8.9 80 230-313 8-92 (221)
81 KOG0114 Predicted RNA-binding 99.4 7.6E-13 1.7E-17 93.6 8.7 76 66-142 16-95 (124)
82 KOG0108 mRNA cleavage and poly 99.4 4.4E-13 9.4E-18 121.8 9.0 76 69-144 19-100 (435)
83 KOG4207 Predicted splicing fac 99.4 2.6E-13 5.7E-18 107.9 6.6 76 230-309 12-91 (256)
84 KOG0111 Cyclophilin-type pepti 99.4 1.9E-13 4E-18 109.7 5.5 78 66-143 8-91 (298)
85 cd00590 RRM RRM (RNA recogniti 99.4 1.9E-12 4E-17 89.3 9.3 71 233-307 1-74 (74)
86 smart00360 RRM RNA recognition 99.4 1.2E-12 2.5E-17 89.5 8.0 67 236-306 1-71 (71)
87 KOG0126 Predicted RNA-binding 99.4 3.1E-14 6.6E-19 111.0 -0.1 75 67-141 34-114 (219)
88 KOG0109 RNA-binding protein LA 99.4 4E-13 8.7E-18 112.2 6.1 74 233-314 4-77 (346)
89 smart00362 RRM_2 RNA recogniti 99.4 2.3E-12 5E-17 88.3 8.7 67 70-136 1-71 (72)
90 KOG0113 U1 small nuclear ribon 99.4 3.3E-12 7.2E-17 107.1 10.6 82 229-314 99-184 (335)
91 KOG0126 Predicted RNA-binding 99.4 6E-14 1.3E-18 109.3 0.2 77 230-310 34-114 (219)
92 PLN03121 nucleic acid binding 99.4 2.5E-12 5.5E-17 106.4 9.8 71 68-140 5-79 (243)
93 KOG0117 Heterogeneous nuclear 99.4 4.5E-12 9.7E-17 111.8 10.4 79 229-310 81-163 (506)
94 KOG0149 Predicted RNA-binding 99.3 2E-12 4.4E-17 105.2 6.9 65 230-295 11-79 (247)
95 KOG0131 Splicing factor 3b, su 99.3 2.6E-12 5.6E-17 100.4 6.4 75 231-309 9-87 (203)
96 KOG0112 Large RNA-binding prot 99.3 1.4E-12 3E-17 123.7 5.3 170 59-313 363-533 (975)
97 KOG0130 RNA-binding protein RB 99.3 4.1E-12 9E-17 94.3 6.6 75 68-142 72-152 (170)
98 KOG0129 Predicted RNA-binding 99.3 3.6E-11 7.9E-16 108.2 13.7 160 68-288 259-432 (520)
99 KOG0108 mRNA cleavage and poly 99.3 4.2E-12 9.1E-17 115.4 7.9 79 232-314 19-101 (435)
100 COG0724 RNA-binding proteins ( 99.3 1.5E-11 3.2E-16 107.5 9.7 75 231-309 115-193 (306)
101 cd00590 RRM RRM (RNA recogniti 99.3 2.8E-11 6.1E-16 83.3 9.1 69 70-138 1-74 (74)
102 smart00360 RRM RNA recognition 99.3 1.8E-11 3.9E-16 83.5 7.7 64 73-136 1-70 (71)
103 KOG1457 RNA binding protein (c 99.3 2.6E-11 5.7E-16 97.7 9.2 83 230-313 33-120 (284)
104 KOG0415 Predicted peptidyl pro 99.2 1E-11 2.3E-16 106.4 6.0 83 227-313 235-321 (479)
105 KOG4454 RNA binding protein (R 99.2 2.8E-12 6.1E-17 103.0 1.6 134 65-295 6-151 (267)
106 KOG0132 RNA polymerase II C-te 99.2 2.6E-11 5.7E-16 113.5 8.0 79 230-314 420-498 (894)
107 PF13893 RRM_5: RNA recognitio 99.2 7.5E-11 1.6E-15 77.2 7.6 52 85-139 1-56 (56)
108 smart00361 RRM_1 RNA recogniti 99.2 5.9E-11 1.3E-15 81.4 6.8 58 245-306 2-70 (70)
109 KOG0120 Splicing factor U2AF, 99.2 1.4E-10 3E-15 106.3 10.6 178 65-310 172-368 (500)
110 KOG4660 Protein Mei2, essentia 99.2 1.2E-10 2.5E-15 105.9 9.4 174 65-310 72-249 (549)
111 KOG0153 Predicted RNA-binding 99.1 3.7E-10 8E-15 96.9 9.2 83 223-311 220-303 (377)
112 KOG0226 RNA-binding proteins [ 99.1 1.1E-09 2.3E-14 90.3 10.5 72 231-306 190-265 (290)
113 KOG0132 RNA polymerase II C-te 99.1 3.1E-10 6.8E-15 106.5 7.7 70 68-141 421-494 (894)
114 KOG1365 RNA-binding protein Fu 99.1 6.2E-10 1.3E-14 96.6 8.5 183 69-306 162-357 (508)
115 KOG0128 RNA-binding protein SA 99.0 3.7E-11 8E-16 113.8 0.1 143 68-310 667-814 (881)
116 smart00361 RRM_1 RNA recogniti 99.0 1E-09 2.2E-14 75.2 7.2 55 82-136 2-69 (70)
117 KOG0415 Predicted peptidyl pro 99.0 4E-10 8.7E-15 96.8 6.2 77 68-144 239-321 (479)
118 KOG4661 Hsp27-ERE-TATA-binding 99.0 6.8E-10 1.5E-14 100.8 7.7 81 230-314 404-488 (940)
119 KOG4211 Splicing factor hnRNP- 99.0 2.9E-08 6.3E-13 89.2 17.4 73 67-139 102-179 (510)
120 KOG0146 RNA-binding protein ET 99.0 2.7E-10 5.9E-15 94.3 4.3 83 230-313 18-103 (371)
121 KOG0153 Predicted RNA-binding 99.0 1.3E-09 2.9E-14 93.5 7.8 73 65-141 225-302 (377)
122 KOG4208 Nucleolar RNA-binding 99.0 2.2E-09 4.8E-14 86.0 7.3 74 69-142 50-130 (214)
123 KOG4210 Nuclear localization s 98.9 3.1E-09 6.7E-14 92.5 6.9 169 67-312 87-265 (285)
124 KOG4307 RNA binding protein RB 98.9 1.2E-07 2.7E-12 88.4 17.2 191 69-308 312-511 (944)
125 KOG4208 Nucleolar RNA-binding 98.8 1.2E-08 2.7E-13 81.8 7.8 77 230-310 48-129 (214)
126 KOG4661 Hsp27-ERE-TATA-binding 98.8 9.9E-09 2.2E-13 93.4 7.6 77 68-144 405-487 (940)
127 KOG0151 Predicted splicing reg 98.8 9.7E-09 2.1E-13 95.7 6.6 81 227-311 170-257 (877)
128 KOG4660 Protein Mei2, essentia 98.8 4.3E-09 9.3E-14 95.8 4.3 70 228-298 72-141 (549)
129 KOG2193 IGF-II mRNA-binding pr 98.7 1.4E-09 3.1E-14 95.5 -0.2 147 69-310 2-156 (584)
130 KOG0533 RRM motif-containing p 98.7 4.2E-08 9.1E-13 82.5 8.4 78 69-146 84-166 (243)
131 PF11608 Limkain-b1: Limkain b 98.7 9E-08 1.9E-12 65.6 7.9 69 232-310 3-76 (90)
132 KOG0116 RasGAP SH3 binding pro 98.7 4.2E-08 9.2E-13 89.0 7.7 76 231-311 288-367 (419)
133 KOG0116 RasGAP SH3 binding pro 98.7 1.2E-07 2.6E-12 86.2 10.2 76 66-141 286-366 (419)
134 KOG0106 Alternative splicing f 98.7 1.5E-08 3.2E-13 83.4 3.9 70 233-310 3-72 (216)
135 KOG0533 RRM motif-containing p 98.7 1E-07 2.3E-12 80.1 9.0 79 230-312 82-163 (243)
136 PF04059 RRM_2: RNA recognitio 98.6 2.7E-07 5.9E-12 66.5 8.7 73 69-141 2-86 (97)
137 PF04059 RRM_2: RNA recognitio 98.6 6.2E-07 1.3E-11 64.7 9.5 80 232-311 2-87 (97)
138 KOG4454 RNA binding protein (R 98.6 2.2E-08 4.8E-13 80.8 2.2 75 231-309 9-85 (267)
139 KOG4205 RNA-binding protein mu 98.6 8.2E-08 1.8E-12 84.0 5.0 77 67-143 96-177 (311)
140 KOG4676 Splicing factor, argin 98.5 9.8E-08 2.1E-12 83.4 5.1 196 69-295 8-214 (479)
141 KOG4307 RNA binding protein RB 98.5 1.3E-05 2.7E-10 75.3 18.7 72 231-306 867-942 (944)
142 KOG1548 Transcription elongati 98.5 4.7E-07 1E-11 78.1 8.0 77 231-311 134-221 (382)
143 KOG4209 Splicing factor RNPS1, 98.5 3.2E-07 7E-12 77.4 5.9 77 230-311 100-180 (231)
144 KOG0151 Predicted splicing reg 98.4 3.9E-07 8.3E-12 85.3 6.7 77 65-141 171-256 (877)
145 KOG1365 RNA-binding protein Fu 98.4 7.7E-06 1.7E-10 71.6 13.3 157 64-287 56-224 (508)
146 PF08777 RRM_3: RNA binding mo 98.4 8.3E-07 1.8E-11 65.5 6.0 59 232-292 2-60 (105)
147 KOG0226 RNA-binding proteins [ 98.4 4E-07 8.6E-12 75.4 4.5 69 68-136 190-264 (290)
148 KOG4209 Splicing factor RNPS1, 98.4 6.8E-07 1.5E-11 75.4 5.9 77 65-142 98-180 (231)
149 COG5175 MOT2 Transcriptional r 98.1 6E-06 1.3E-10 71.1 6.4 77 231-311 114-203 (480)
150 PF11608 Limkain-b1: Limkain b 98.1 2.7E-05 5.9E-10 53.6 7.7 65 69-141 3-76 (90)
151 KOG1855 Predicted RNA-binding 98.0 5.8E-06 1.3E-10 73.4 4.6 71 227-297 227-314 (484)
152 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.2E-05 2.7E-10 51.3 4.9 52 232-286 2-53 (53)
153 PF05172 Nup35_RRM: Nup53/35/4 97.9 4.5E-05 9.7E-10 55.4 6.0 74 231-309 6-90 (100)
154 PF08777 RRM_3: RNA binding mo 97.8 3.9E-05 8.4E-10 56.7 5.7 56 70-129 3-58 (105)
155 KOG1995 Conserved Zn-finger pr 97.8 2.5E-05 5.4E-10 68.2 5.0 80 229-312 64-155 (351)
156 KOG1924 RhoA GTPase effector D 97.8 4.2E-05 9.1E-10 72.9 6.7 7 6-12 528-534 (1102)
157 KOG1996 mRNA splicing factor [ 97.7 7.7E-05 1.7E-09 63.3 6.4 61 245-309 300-365 (378)
158 KOG3152 TBP-binding protein, a 97.7 2.1E-05 4.7E-10 65.4 2.7 68 231-298 74-157 (278)
159 KOG2416 Acinus (induces apopto 97.7 4.9E-05 1.1E-09 70.3 4.7 83 226-311 439-522 (718)
160 KOG0115 RNA-binding protein p5 97.7 0.00015 3.2E-09 60.5 6.7 74 233-306 33-109 (275)
161 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.0002 4.4E-09 45.7 5.1 52 69-125 2-53 (53)
162 PF08952 DUF1866: Domain of un 97.5 0.0005 1.1E-08 53.0 7.3 56 246-310 51-106 (146)
163 KOG4210 Nuclear localization s 97.5 6.7E-05 1.4E-09 65.6 2.7 73 68-141 184-263 (285)
164 KOG1995 Conserved Zn-finger pr 97.5 0.00013 2.9E-09 63.7 4.5 79 65-143 63-155 (351)
165 KOG2202 U2 snRNP splicing fact 97.4 8.5E-05 1.8E-09 62.0 1.8 60 246-309 83-146 (260)
166 COG5175 MOT2 Transcriptional r 97.4 0.00049 1.1E-08 59.6 6.4 73 69-141 115-202 (480)
167 KOG0128 RNA-binding protein SA 97.3 1.5E-05 3.3E-10 76.6 -3.8 154 69-295 572-735 (881)
168 KOG0129 Predicted RNA-binding 97.3 0.00091 2E-08 61.3 7.5 73 64-140 366-441 (520)
169 PF10309 DUF2414: Protein of u 97.3 0.0017 3.7E-08 42.5 6.7 54 232-289 6-62 (62)
170 KOG2314 Translation initiation 97.3 0.00063 1.4E-08 62.8 6.2 73 231-306 58-139 (698)
171 KOG2314 Translation initiation 97.2 0.0016 3.5E-08 60.2 8.4 74 65-138 55-140 (698)
172 KOG4849 mRNA cleavage factor I 97.1 0.0022 4.8E-08 55.9 8.0 63 67-129 79-145 (498)
173 KOG1855 Predicted RNA-binding 97.1 0.00054 1.2E-08 61.3 4.1 64 66-129 229-307 (484)
174 PF08675 RNA_bind: RNA binding 97.1 0.0067 1.5E-07 41.9 8.2 61 69-136 10-70 (87)
175 PF15023 DUF4523: Protein of u 97.0 0.0043 9.4E-08 47.3 7.6 68 68-140 86-160 (166)
176 PF15023 DUF4523: Protein of u 97.0 0.0047 1E-07 47.1 7.6 77 228-312 83-163 (166)
177 PF10309 DUF2414: Protein of u 96.9 0.006 1.3E-07 40.0 6.9 53 69-128 6-62 (62)
178 KOG4676 Splicing factor, argin 96.9 0.0012 2.6E-08 58.4 4.7 73 233-309 9-88 (479)
179 KOG0112 Large RNA-binding prot 96.9 0.00026 5.7E-09 68.7 0.3 77 228-308 369-448 (975)
180 KOG4574 RNA-binding protein (c 96.9 0.00073 1.6E-08 65.3 3.0 75 233-311 300-374 (1007)
181 KOG3152 TBP-binding protein, a 96.8 0.0014 3.1E-08 54.8 3.6 62 68-129 74-149 (278)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 96.7 0.0047 1E-07 50.2 6.1 79 231-310 7-97 (176)
183 KOG0115 RNA-binding protein p5 96.7 0.0016 3.4E-08 54.6 3.3 61 69-129 32-93 (275)
184 KOG2068 MOT2 transcription fac 96.6 0.0008 1.7E-08 58.6 1.4 76 232-311 78-163 (327)
185 KOG2202 U2 snRNP splicing fact 96.5 0.0014 3.1E-08 54.9 1.9 58 83-140 83-146 (260)
186 KOG2416 Acinus (induces apopto 96.4 0.005 1.1E-07 57.5 5.3 75 65-143 441-523 (718)
187 KOG2253 U1 snRNP complex, subu 96.4 0.0055 1.2E-07 58.0 5.6 61 69-136 41-105 (668)
188 KOG4849 mRNA cleavage factor I 96.4 0.0034 7.5E-08 54.7 3.9 77 231-310 80-162 (498)
189 PF08675 RNA_bind: RNA binding 96.4 0.02 4.3E-07 39.7 6.6 56 231-291 9-64 (87)
190 KOG2193 IGF-II mRNA-binding pr 96.3 0.0034 7.5E-08 56.1 3.2 75 233-312 3-77 (584)
191 PF10567 Nab6_mRNP_bdg: RNA-re 96.2 0.22 4.8E-06 42.9 13.2 82 60-141 7-107 (309)
192 PF07576 BRAP2: BRCA1-associat 96.1 0.13 2.8E-06 38.2 10.2 68 231-298 13-83 (110)
193 PF04847 Calcipressin: Calcipr 96.0 0.023 5E-07 46.4 6.3 62 244-311 8-71 (184)
194 KOG4285 Mitotic phosphoprotein 95.9 0.026 5.6E-07 48.5 6.6 75 231-312 197-271 (350)
195 PF05172 Nup35_RRM: Nup53/35/4 95.9 0.04 8.6E-07 40.1 6.7 73 67-140 5-90 (100)
196 PF08952 DUF1866: Domain of un 95.7 0.063 1.4E-06 41.6 7.4 69 69-143 28-108 (146)
197 PF07576 BRAP2: BRCA1-associat 95.3 0.27 5.8E-06 36.5 9.4 62 68-129 13-75 (110)
198 KOG1996 mRNA splicing factor [ 95.0 0.06 1.3E-06 46.2 5.7 59 82-140 300-365 (378)
199 KOG2318 Uncharacterized conser 95.0 0.15 3.3E-06 47.9 8.7 78 229-308 172-305 (650)
200 KOG2591 c-Mpl binding protein, 94.6 0.1 2.2E-06 48.7 6.7 65 231-298 175-248 (684)
201 PF03880 DbpA: DbpA RNA bindin 94.5 0.25 5.5E-06 33.8 6.9 67 233-308 2-74 (74)
202 PF03467 Smg4_UPF3: Smg-4/UPF3 94.4 0.067 1.4E-06 43.5 4.6 62 66-129 5-76 (176)
203 KOG0804 Cytoplasmic Zn-finger 94.3 0.16 3.6E-06 46.2 7.1 68 231-298 74-144 (493)
204 KOG2135 Proteins containing th 94.2 0.028 6E-07 51.3 2.1 74 231-311 372-446 (526)
205 KOG2253 U1 snRNP complex, subu 94.2 0.1 2.2E-06 49.7 5.8 66 227-297 36-101 (668)
206 PHA01732 proline-rich protein 92.9 0.18 4E-06 34.7 3.8 11 15-25 4-14 (94)
207 KOG2591 c-Mpl binding protein, 92.5 0.31 6.8E-06 45.6 6.0 63 69-136 176-246 (684)
208 PF11767 SET_assoc: Histone ly 92.5 0.49 1.1E-05 31.6 5.3 51 242-297 11-61 (66)
209 KOG4574 RNA-binding protein (c 91.2 0.75 1.6E-05 45.4 7.1 71 69-143 299-375 (1007)
210 KOG2068 MOT2 transcription fac 90.3 0.13 2.9E-06 45.1 1.3 72 69-140 78-161 (327)
211 PF11767 SET_assoc: Histone ly 89.9 1.3 2.8E-05 29.5 5.5 43 79-129 11-54 (66)
212 PF04847 Calcipressin: Calcipr 89.6 1.1 2.5E-05 36.5 6.1 57 81-141 8-70 (184)
213 PF07292 NID: Nmi/IFP 35 domai 88.7 1.1 2.3E-05 31.8 4.6 24 230-253 51-74 (88)
214 KOG0804 Cytoplasmic Zn-finger 88.4 2.5 5.5E-05 38.8 7.9 62 68-129 74-136 (493)
215 KOG2891 Surface glycoprotein [ 88.2 0.16 3.6E-06 43.2 0.3 79 233-311 151-268 (445)
216 PF14111 DUF4283: Domain of un 88.1 0.55 1.2E-05 36.9 3.3 34 234-267 107-141 (153)
217 KOG2135 Proteins containing th 86.0 0.48 1E-05 43.5 2.0 70 68-141 372-445 (526)
218 KOG4410 5-formyltetrahydrofola 84.8 2 4.4E-05 37.0 5.0 48 68-119 330-378 (396)
219 KOG3671 Actin regulatory prote 83.7 9.8 0.00021 35.6 9.2 31 68-98 481-511 (569)
220 COG5178 PRP8 U5 snRNP spliceos 82.9 1.8 3.8E-05 44.5 4.5 37 67-103 71-107 (2365)
221 KOG4285 Mitotic phosphoprotein 81.5 11 0.00024 33.0 8.1 54 71-129 200-253 (350)
222 COG5638 Uncharacterized conser 81.0 8 0.00017 35.2 7.4 82 226-309 141-296 (622)
223 PF03880 DbpA: DbpA RNA bindin 78.1 14 0.0003 25.1 6.5 55 78-139 11-74 (74)
224 KOG2318 Uncharacterized conser 77.4 10 0.00023 36.1 7.3 75 65-139 171-305 (650)
225 KOG1923 Rac1 GTPase effector F 76.6 8.7 0.00019 37.9 6.8 12 69-80 386-397 (830)
226 PRK14548 50S ribosomal protein 76.0 13 0.00029 26.0 6.0 56 234-289 23-81 (84)
227 KOG4483 Uncharacterized conser 75.4 9.2 0.0002 34.7 6.2 59 64-127 387-446 (528)
228 TIGR03636 L23_arch archaeal ri 73.6 18 0.00039 24.9 6.0 55 234-288 16-73 (77)
229 KOG4019 Calcineurin-mediated s 72.3 3.3 7.3E-05 33.3 2.5 74 232-310 11-89 (193)
230 KOG4213 RNA-binding protein La 72.3 4.7 0.0001 32.4 3.3 58 68-129 111-171 (205)
231 PRK14548 50S ribosomal protein 69.5 15 0.00033 25.8 5.0 55 72-128 24-81 (84)
232 KOG4483 Uncharacterized conser 69.3 9.6 0.00021 34.6 4.9 56 230-288 390-446 (528)
233 KOG1925 Rac1 GTPase effector F 67.1 25 0.00054 33.1 7.2 27 65-91 303-329 (817)
234 PF08544 GHMP_kinases_C: GHMP 66.1 25 0.00054 24.1 5.8 44 246-290 37-80 (85)
235 PHA01732 proline-rich protein 66.1 8.6 0.00019 26.7 3.1 9 95-103 64-72 (94)
236 KOG2295 C2H2 Zn-finger protein 65.6 1.5 3.2E-05 41.3 -0.9 68 230-297 230-301 (648)
237 KOG2891 Surface glycoprotein [ 64.7 8.4 0.00018 33.1 3.5 35 68-102 149-195 (445)
238 PF03468 XS: XS domain; Inter 64.6 5.8 0.00012 29.8 2.3 56 70-126 10-75 (116)
239 TIGR03636 L23_arch archaeal ri 64.1 26 0.00056 24.1 5.2 55 71-127 16-73 (77)
240 KOG1830 Wiskott Aldrich syndro 63.8 11 0.00023 34.6 4.1 12 130-141 493-504 (518)
241 cd04904 ACT_AAAH ACT domain of 63.4 29 0.00063 23.4 5.5 49 244-292 13-66 (74)
242 KOG2675 Adenylate cyclase-asso 63.2 8.1 0.00018 35.5 3.3 14 80-93 347-360 (480)
243 PF10567 Nab6_mRNP_bdg: RNA-re 62.6 11 0.00023 32.9 3.8 53 231-283 15-78 (309)
244 cd04908 ACT_Bt0572_1 N-termina 62.5 40 0.00087 21.9 6.7 49 244-293 14-63 (66)
245 KOG4410 5-formyltetrahydrofola 62.4 20 0.00043 31.1 5.3 50 230-280 329-378 (396)
246 KOG4365 Uncharacterized conser 61.0 1.4 3.1E-05 40.2 -1.8 81 231-316 3-87 (572)
247 PRK11901 hypothetical protein; 60.1 16 0.00035 32.5 4.5 58 230-291 244-306 (327)
248 PF03468 XS: XS domain; Inter 59.9 5.9 0.00013 29.7 1.6 50 233-283 10-70 (116)
249 PF09707 Cas_Cas2CT1978: CRISP 59.3 23 0.0005 25.0 4.4 47 69-116 26-72 (86)
250 cd04889 ACT_PDH-BS-like C-term 58.4 37 0.00081 21.1 5.1 42 245-286 12-55 (56)
251 PF07292 NID: Nmi/IFP 35 domai 56.8 6.6 0.00014 27.8 1.3 23 68-90 52-74 (88)
252 PF00403 HMA: Heavy-metal-asso 56.1 50 0.0011 21.0 6.2 54 233-288 1-58 (62)
253 PF15513 DUF4651: Domain of un 54.8 25 0.00055 23.0 3.6 19 83-101 9-27 (62)
254 PRK11558 putative ssRNA endonu 54.0 21 0.00046 25.7 3.5 50 68-118 27-76 (97)
255 PF15513 DUF4651: Domain of un 54.0 29 0.00062 22.7 3.8 19 246-264 9-27 (62)
256 PF02714 DUF221: Domain of unk 52.5 17 0.00037 32.5 3.6 34 111-144 1-36 (325)
257 COG5193 LHP1 La protein, small 51.4 8.4 0.00018 35.0 1.4 61 67-127 173-245 (438)
258 KOG1546 Metacaspase involved i 51.3 1.8E+02 0.004 26.1 10.8 72 69-145 65-152 (362)
259 cd04880 ACT_AAAH-PDT-like ACT 50.4 74 0.0016 21.2 5.8 48 244-291 12-66 (75)
260 PF08734 GYD: GYD domain; Int 50.1 64 0.0014 22.9 5.6 46 245-290 22-68 (91)
261 PF14893 PNMA: PNMA 47.6 21 0.00045 32.1 3.3 72 66-139 16-94 (331)
262 PTZ00191 60S ribosomal protein 46.6 76 0.0017 24.8 5.8 54 234-287 84-140 (145)
263 COG0150 PurM Phosphoribosylami 46.5 6 0.00013 35.3 -0.2 49 244-292 274-322 (345)
264 KOG2187 tRNA uracil-5-methyltr 46.4 21 0.00046 33.9 3.2 73 236-313 30-103 (534)
265 PF11411 DNA_ligase_IV: DNA li 45.3 16 0.00036 21.0 1.5 16 78-93 19-34 (36)
266 PRK15319 AIDA autotransporter- 45.3 24 0.00051 38.8 3.7 6 252-257 1964-1969(2039)
267 KOG1295 Nonsense-mediated deca 45.2 35 0.00076 31.0 4.3 68 231-298 7-81 (376)
268 PF12829 Mhr1: Transcriptional 44.0 58 0.0013 23.2 4.4 55 238-292 19-74 (91)
269 KOG2295 C2H2 Zn-finger protein 44.0 3.8 8.2E-05 38.7 -1.9 62 68-129 231-294 (648)
270 PF14893 PNMA: PNMA 43.5 29 0.00063 31.2 3.6 49 231-279 18-72 (331)
271 PF08156 NOP5NT: NOP5NT (NUC12 43.4 7.4 0.00016 26.0 -0.1 39 246-290 27-65 (67)
272 cd04879 ACT_3PGDH-like ACT_3PG 43.0 86 0.0019 19.9 6.2 56 234-290 2-60 (71)
273 cd04905 ACT_CM-PDT C-terminal 43.0 1E+02 0.0023 20.8 6.1 49 244-292 14-69 (80)
274 KOG4008 rRNA processing protei 41.4 25 0.00054 29.7 2.6 36 65-100 37-72 (261)
275 TIGR01873 cas_CT1978 CRISPR-as 39.9 47 0.001 23.5 3.4 49 68-117 25-74 (87)
276 COG5178 PRP8 U5 snRNP spliceos 39.3 24 0.00051 36.9 2.5 11 92-102 133-143 (2365)
277 KOG0119 Splicing factor 1/bran 38.6 1E+02 0.0023 29.1 6.3 19 7-25 441-461 (554)
278 KOG4672 Uncharacterized conser 37.8 1.3E+02 0.0029 27.7 6.7 10 244-253 471-480 (487)
279 cd04903 ACT_LSD C-terminal ACT 37.7 1.1E+02 0.0023 19.5 6.8 50 240-290 8-60 (71)
280 KOG4365 Uncharacterized conser 37.3 7.6 0.00016 35.7 -1.0 73 70-143 5-83 (572)
281 CHL00123 rps6 ribosomal protei 37.3 1.1E+02 0.0025 21.9 5.3 54 233-288 10-81 (97)
282 KOG4008 rRNA processing protei 37.2 30 0.00066 29.2 2.5 35 229-263 38-72 (261)
283 PTZ00191 60S ribosomal protein 35.4 1.1E+02 0.0023 24.0 5.1 51 73-125 86-139 (145)
284 COG3254 Uncharacterized conser 35.0 1.3E+02 0.0028 22.1 5.1 41 84-125 28-68 (105)
285 PF11823 DUF3343: Protein of u 34.2 68 0.0015 21.5 3.5 24 271-294 3-26 (73)
286 KOG4213 RNA-binding protein La 33.2 53 0.0012 26.6 3.2 53 231-287 111-168 (205)
287 PF13046 DUF3906: Protein of u 33.2 48 0.0011 21.8 2.4 33 81-113 31-63 (64)
288 KOG3424 40S ribosomal protein 32.8 96 0.0021 23.2 4.2 45 79-124 34-85 (132)
289 cd04931 ACT_PAH ACT domain of 32.1 1.9E+02 0.004 20.5 5.6 47 244-290 27-79 (90)
290 cd04882 ACT_Bt0572_2 C-termina 32.0 1.3E+02 0.0029 18.8 5.1 43 245-287 13-58 (65)
291 cd04930 ACT_TH ACT domain of t 31.5 1.6E+02 0.0034 22.0 5.4 47 245-291 55-106 (115)
292 PF08206 OB_RNB: Ribonuclease 31.5 8 0.00017 24.9 -1.4 31 267-297 6-37 (58)
293 KOG4019 Calcineurin-mediated s 31.2 49 0.0011 26.8 2.7 69 69-141 11-89 (193)
294 cd04929 ACT_TPH ACT domain of 30.3 1.8E+02 0.0038 19.7 5.8 48 244-291 13-65 (74)
295 CHL00030 rpl23 ribosomal prote 29.9 1.6E+02 0.0034 21.1 4.9 32 234-265 21-54 (93)
296 COG0030 KsgA Dimethyladenosine 29.7 80 0.0017 27.4 4.0 27 69-95 96-122 (259)
297 COG3254 Uncharacterized conser 29.6 1.7E+02 0.0038 21.4 5.0 42 245-287 26-69 (105)
298 PRK10905 cell division protein 29.5 1.1E+02 0.0024 27.3 4.8 57 230-290 246-307 (328)
299 PRK10629 EnvZ/OmpR regulon mod 29.3 2.6E+02 0.0056 21.3 7.5 61 231-295 35-99 (127)
300 PF14026 DUF4242: Protein of u 28.3 2E+02 0.0043 19.7 7.4 61 234-295 3-72 (77)
301 cd04902 ACT_3PGDH-xct C-termin 26.7 1.8E+02 0.0039 18.7 5.9 57 235-291 3-64 (73)
302 PF08544 GHMP_kinases_C: GHMP 24.7 2.2E+02 0.0049 19.1 6.2 44 83-129 37-80 (85)
303 PRK11230 glycolate oxidase sub 23.7 2.4E+02 0.0051 27.1 6.4 60 231-290 189-255 (499)
304 KOG4672 Uncharacterized conser 23.6 3.2E+02 0.0069 25.3 6.7 6 133-138 437-442 (487)
305 COG0150 PurM Phosphoribosylami 23.3 38 0.00083 30.4 0.9 49 82-132 275-324 (345)
306 PRK08559 nusG transcription an 23.2 2.9E+02 0.0063 21.6 5.9 34 258-292 36-69 (153)
307 PF09902 DUF2129: Uncharacteri 22.7 2.4E+02 0.0053 19.0 4.5 51 233-295 5-55 (71)
308 PF15063 TC1: Thyroid cancer p 22.6 85 0.0019 21.4 2.2 51 68-128 25-78 (79)
309 PF03439 Spt5-NGN: Early trans 22.5 1.4E+02 0.0031 20.7 3.5 38 257-295 33-70 (84)
310 KOG2893 Zn finger protein [Gen 22.3 4E+02 0.0086 22.7 6.5 11 239-249 318-328 (341)
311 PF12993 DUF3877: Domain of un 21.7 1.3E+02 0.0029 24.1 3.5 35 241-277 107-142 (175)
312 PF07530 PRE_C2HC: Associated 21.6 1.9E+02 0.0041 19.3 3.8 59 83-141 2-64 (68)
313 PF13820 Nucleic_acid_bd: Puta 21.2 1.5E+02 0.0032 23.4 3.7 58 71-129 7-66 (149)
314 PF08734 GYD: GYD domain; Int 21.2 3.1E+02 0.0066 19.4 5.8 46 82-129 22-68 (91)
315 COG5507 Uncharacterized conser 20.4 1.1E+02 0.0024 22.0 2.5 19 271-289 68-86 (117)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.7e-33 Score=250.90 Aligned_cols=166 Identities=25% Similarity=0.370 Sum_probs=144.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEE
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (319)
.....++|||+|||.++|+++|+++|+.||.|++|+|+.+ +++++|||||+|.+.++|++||+.|+ .++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 3456789999999999999999999999999999999887 78999999999999999999999999 88999998
Q ss_pred EcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccC
Q 020954 138 LAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFN 217 (319)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 217 (319)
|++.....
T Consensus 183 ~a~p~~~~------------------------------------------------------------------------ 190 (346)
T TIGR01659 183 YARPGGES------------------------------------------------------------------------ 190 (346)
T ss_pred cccccccc------------------------------------------------------------------------
Confidence 87631100
Q ss_pred CCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCc
Q 020954 218 NSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTI 293 (319)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~ 293 (319)
...++|||+|||.++|+++|+++|++||.|++|+|+.+. .++||||+|++.++|++||+.|||..
T Consensus 191 -----------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 191 -----------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred -----------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 014579999999999999999999999999999998753 34699999999999999999999999
Q ss_pred ccCCCCCCeEEEEecCCCCCC
Q 020954 294 LYSSPTSDGIRLEFAKSRMGM 314 (319)
Q Consensus 294 i~~~~~G~~i~V~~ak~~~~~ 314 (319)
+.+. +++|+|.|++.....
T Consensus 260 ~~g~--~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 260 PEGG--SQPLTVRLAEEHGKA 278 (346)
T ss_pred cCCC--ceeEEEEECCccccc
Confidence 9865 568999999876443
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.6e-31 Score=242.85 Aligned_cols=242 Identities=19% Similarity=0.220 Sum_probs=146.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEE
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDL 138 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~ 138 (319)
..++|||+|||.++++++|+++|+.||.|..+++..+ ++.++|||||+|.+.++|++|++.|| .+..|.|.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 3478999999999999999999999999999998877 67899999999999999999999999 336788888
Q ss_pred cccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCC-CCCCCCCCCCCC--CCccc-
Q 020954 139 AKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSA--FNTIGYP-HTQSHENFDARG--GSLIT- 212 (319)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~-~~~~~~~~~~~~--~~~~~- 212 (319)
+...................................+............. ....... ............ ....+
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 86543211100000000000000000000000000000000000000000 0000000 000000000000 00000
Q ss_pred ---ccccCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHH
Q 020954 213 ---TAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAA 285 (319)
Q Consensus 213 ---~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~A 285 (319)
............+.....+.+|||+|||.++++++|+++|++||.|++|+|+.+. .+|||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0000000001111222345689999999999999999999999999999998754 577999999999999999
Q ss_pred HHHhCCCcccCCCCCCeEEEEecCCCC
Q 020954 286 LNNLQGTILYSSPTSDGIRLEFAKSRM 312 (319)
Q Consensus 286 l~~lnG~~i~~~~~G~~i~V~~ak~~~ 312 (319)
|+.|||+.|+ ||.|+|+|+.++.
T Consensus 328 i~~lnG~~~~----gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLG----NRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEEC----CeEEEEEEccCCC
Confidence 9999999999 5579999999875
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=239.94 Aligned_cols=234 Identities=21% Similarity=0.285 Sum_probs=160.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC-----CCcEEEEEEccc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLAKS 141 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~-----~g~~l~v~~a~~ 141 (319)
..||||.||.++.|++|.-||++.|+|.+++|++| +|.++|||||+|.+.++|++|++.|| .|+.|.|+.+..
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 89999999999999999999999999999999998 99999999999999999999999999 899999998866
Q ss_pred CCccc-----CCCCCCCCccccccc-CC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCC
Q 020954 142 NSRSK-----RSRTDDEWTGSDKKA-RG------PSAFSRGTADLGIGSVHMPGMGNSAFNTIGY--PHTQSHENFDARG 207 (319)
Q Consensus 142 ~~~~~-----~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~ 207 (319)
+.+.. +.+..+......++. .. -..........|+.|+.+-++..+.....-. +..+..++
T Consensus 164 n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn----- 238 (506)
T KOG0117|consen 164 NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGN----- 238 (506)
T ss_pred cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCC-----
Confidence 65521 111111100000000 00 0000011123455555554443332211100 00000000
Q ss_pred CCcccccccCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHH
Q 020954 208 GSLITTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALN 287 (319)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~ 287 (319)
........+..-...+.......|||+||+.++|+|.|+++|++||.|++|+.++| ||||+|.+.++|.+||+
T Consensus 239 ---~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 239 ---AITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMK 311 (506)
T ss_pred ---cceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHH
Confidence 00000000000011122334679999999999999999999999999999998864 99999999999999999
Q ss_pred HhCCCcccCCCCCCeEEEEecCCCCCCCCCC
Q 020954 288 NLQGTILYSSPTSDGIRLEFAKSRMGMPRKA 318 (319)
Q Consensus 288 ~lnG~~i~~~~~G~~i~V~~ak~~~~~~~~~ 318 (319)
.|||++|. |..|.|.+||....+++.+
T Consensus 312 ~~ngkeld----G~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 312 ETNGKELD----GSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HhcCceec----CceEEEEecCChhhhccch
Confidence 99999999 5579999999988777654
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-32 Score=223.80 Aligned_cols=174 Identities=17% Similarity=0.246 Sum_probs=147.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
+--|||+.|...|+.++|++.|.+||+|.+++|++| ++++|||+||.|-+.++|++||..|| .+|.||-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 567999999999999999999999999999999999 99999999999999999999999999 899999999975
Q ss_pred CCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 020954 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (319)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
+......+. +.-.+
T Consensus 142 Kp~e~n~~~----------ltfde-------------------------------------------------------- 155 (321)
T KOG0148|consen 142 KPSEMNGKP----------LTFDE-------------------------------------------------------- 155 (321)
T ss_pred CccccCCCC----------ccHHH--------------------------------------------------------
Confidence 431110000 00000
Q ss_pred CCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCC
Q 020954 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSD 301 (319)
Q Consensus 222 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~ 301 (319)
......+.+++|||+||+..+||++|++.|+.||.|.+|++.+++ +||||.|++.|+|.+||..|||.+|+ |+
T Consensus 156 -V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAIv~mNntei~----G~ 228 (321)
T KOG0148|consen 156 -VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAIVQMNNTEIG----GQ 228 (321)
T ss_pred -HhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHHHHhcCceeC----ce
Confidence 000122458899999999999999999999999999999999754 59999999999999999999999999 66
Q ss_pred eEEEEecCCCCCC
Q 020954 302 GIRLEFAKSRMGM 314 (319)
Q Consensus 302 ~i~V~~ak~~~~~ 314 (319)
.++.+|.|.-...
T Consensus 229 ~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 229 LVRCSWGKEGDDG 241 (321)
T ss_pred EEEEeccccCCCC
Confidence 8999999976543
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=9.8e-32 Score=251.51 Aligned_cols=172 Identities=15% Similarity=0.225 Sum_probs=142.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
...++|||+||++++++++|+++|+.||.|.+|+|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34579999999999999999999999999999999887 88999999999999999999999999 8999999643
Q ss_pred ccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 020954 140 KSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNS 219 (319)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (319)
....... ....
T Consensus 185 ~~~p~a~---~~~~------------------------------------------------------------------ 195 (612)
T TIGR01645 185 SNMPQAQ---PIID------------------------------------------------------------------ 195 (612)
T ss_pred ccccccc---cccc------------------------------------------------------------------
Confidence 2110000 0000
Q ss_pred CCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 220 SAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 220 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
.........++|||+||+.++++++|+++|+.||.|++|+|..+ .++|||||+|++.++|.+||+.|||+.|+
T Consensus 196 ---~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg 272 (612)
T TIGR01645 196 ---MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG 272 (612)
T ss_pred ---cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC
Confidence 00000112568999999999999999999999999999999874 35679999999999999999999999999
Q ss_pred CCCCCCeEEEEecCCCCC
Q 020954 296 SSPTSDGIRLEFAKSRMG 313 (319)
Q Consensus 296 ~~~~G~~i~V~~ak~~~~ 313 (319)
|+.|+|.++..+..
T Consensus 273 ----Gr~LrV~kAi~pP~ 286 (612)
T TIGR01645 273 ----GQYLRVGKCVTPPD 286 (612)
T ss_pred ----CeEEEEEecCCCcc
Confidence 55799999987643
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.9e-31 Score=242.41 Aligned_cols=162 Identities=27% Similarity=0.388 Sum_probs=143.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+..+|||+|||.++++++|+++|+.||.|.+|+|+.+ +|+++|||||+|.+.++|++||+.|| .|+.|+|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 3589999999999999999999999999999999987 78899999999999999999999999 89999999886
Q ss_pred cCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 020954 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (319)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
.....
T Consensus 82 ~~~~~--------------------------------------------------------------------------- 86 (352)
T TIGR01661 82 PSSDS--------------------------------------------------------------------------- 86 (352)
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 42100
Q ss_pred CCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccC
Q 020954 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYS 296 (319)
Q Consensus 221 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~ 296 (319)
...++|||+|||.++++++|+++|++||.|..+++..+. .++||||+|++.++|++|++.|||..+.+
T Consensus 87 --------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 87 --------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred --------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 014579999999999999999999999999999987643 46799999999999999999999999986
Q ss_pred CCCCCeEEEEecCCCCC
Q 020954 297 SPTSDGIRLEFAKSRMG 313 (319)
Q Consensus 297 ~~~G~~i~V~~ak~~~~ 313 (319)
+ +++|+|.|++.+..
T Consensus 159 ~--~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 159 C--TEPITVKFANNPSS 173 (352)
T ss_pred C--ceeEEEEECCCCCc
Confidence 5 56899999987753
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=2e-30 Score=242.48 Aligned_cols=233 Identities=19% Similarity=0.189 Sum_probs=150.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC-----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~-----~g~~l~v~~a~~ 141 (319)
..+|||+|||.+++|++|+++|++||.|.+++|++| +++++|||||+|.+.++|++||+.|| .|+.|.|.++..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 489999999999999999999999999999999888 88999999999999999999999999 477777776643
Q ss_pred CCcccCCCC--CCCCcccccccCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020954 142 NSRSKRSRT--DDEWTGSDKKARG----------PSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGS 209 (319)
Q Consensus 142 ~~~~~~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 209 (319)
+....-... ............. ...........+++++.+.....+......... .......+...
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~--gki~l~Gr~I~ 215 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP--GRIQLWGHVIA 215 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc--cceEecCceEE
Confidence 322100000 0000000000000 000000112345555555443322111000000 00000000000
Q ss_pred cccccccCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcC--CCceEEEEeecCCCCEEEEEecChHHHHHHHH
Q 020954 210 LITTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKC--PGFLKLKIQSTYGPPVAFVDFQDTVSSTAALN 287 (319)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~f--G~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~ 287 (319)
...+ ..............++|||+||+.++|+++|+++|++| |.|++|++++ +||||+|++.++|.+||+
T Consensus 216 VdwA----~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 216 VDWA----EPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEee----cccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeCCHHHHHHHHH
Confidence 0000 00000011122346789999999999999999999999 9999998874 499999999999999999
Q ss_pred HhCCCcccCCCCCCeEEEEecCCCCCC
Q 020954 288 NLQGTILYSSPTSDGIRLEFAKSRMGM 314 (319)
Q Consensus 288 ~lnG~~i~~~~~G~~i~V~~ak~~~~~ 314 (319)
.|||..|. |+.|+|+|++.+..+
T Consensus 288 ~lnG~~i~----Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 288 ELNGKELE----GSEIEVTLAKPVDKK 310 (578)
T ss_pred HhCCCEEC----CEEEEEEEccCCCcc
Confidence 99999999 557999999987544
No 8
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.9e-30 Score=223.82 Aligned_cols=171 Identities=22% Similarity=0.318 Sum_probs=147.1
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC-------CCcE
Q 020954 63 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN-------KGST 133 (319)
Q Consensus 63 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~-------~g~~ 133 (319)
..+.+.-+||||-+|..++|.||+++|++||.|.+|.|++| ++.++|||||.|.+.++|.+|+..|+ .-.+
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 34466788999999999999999999999999999999998 88999999999999999999999998 5567
Q ss_pred EEEEEcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 020954 134 LYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITT 213 (319)
Q Consensus 134 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 213 (319)
|.|.||.......
T Consensus 109 vqvk~Ad~E~er~------------------------------------------------------------------- 121 (510)
T KOG0144|consen 109 VQVKYADGERERI------------------------------------------------------------------- 121 (510)
T ss_pred eeecccchhhhcc-------------------------------------------------------------------
Confidence 8888876422110
Q ss_pred cccCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec---CCCCEEEEEecChHHHHHHHHHhC
Q 020954 214 AKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQDTVSSTAALNNLQ 290 (319)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~---~~~~~aFV~F~~~~~A~~Al~~ln 290 (319)
...+.|||+-|+..+||.|++++|++||.|++|.|.++ .++|||||+|.+.+.|..||++||
T Consensus 122 ---------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 122 ---------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred ---------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhc
Confidence 12557999999999999999999999999999999983 467899999999999999999999
Q ss_pred CCcccCCCCCCeEEEEecCCCCCCCC
Q 020954 291 GTILYSSPTSDGIRLEFAKSRMGMPR 316 (319)
Q Consensus 291 G~~i~~~~~G~~i~V~~ak~~~~~~~ 316 (319)
|..-...+ ..+|.|.||..+..|..
T Consensus 187 g~~tmeGc-s~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 187 GTQTMEGC-SQPLVVKFADTQKDKDG 211 (510)
T ss_pred cceeeccC-CCceEEEecccCCCchH
Confidence 97554443 67999999998765543
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=3.2e-29 Score=235.41 Aligned_cols=173 Identities=21% Similarity=0.357 Sum_probs=140.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEE
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDL 138 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~ 138 (319)
...+.++|||+|||.++++++|+++|+.||.|.+|+|+.+ +++++|||||+|.+.++|.+||.... .|+.|.|.+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 3455799999999999999999999999999999999887 78899999999999999999996433 899999977
Q ss_pred cccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 020954 139 AKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNN 218 (319)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (319)
+........... .
T Consensus 165 ~~~~~~~~~~~~--------------~----------------------------------------------------- 177 (457)
T TIGR01622 165 SQAEKNRAAKAA--------------T----------------------------------------------------- 177 (457)
T ss_pred cchhhhhhhhcc--------------c-----------------------------------------------------
Confidence 543211000000 0
Q ss_pred CCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcc
Q 020954 219 SSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTIL 294 (319)
Q Consensus 219 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i 294 (319)
......+..++|||+||+.++|+++|+++|+.||.|..|.+..+. .++||||+|.+.++|.+|++.|||..|
T Consensus 178 ----~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i 253 (457)
T TIGR01622 178 ----HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL 253 (457)
T ss_pred ----ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE
Confidence 000001126789999999999999999999999999999998643 457999999999999999999999999
Q ss_pred cCCCCCCeEEEEecCCC
Q 020954 295 YSSPTSDGIRLEFAKSR 311 (319)
Q Consensus 295 ~~~~~G~~i~V~~ak~~ 311 (319)
. |+.|+|.|++..
T Consensus 254 ~----g~~i~v~~a~~~ 266 (457)
T TIGR01622 254 A----GRPIKVGYAQDS 266 (457)
T ss_pred C----CEEEEEEEccCC
Confidence 8 567999998743
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=3.7e-28 Score=228.23 Aligned_cols=196 Identities=20% Similarity=0.285 Sum_probs=141.5
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 66 DEVRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 66 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..+++|||+||+. .+|+++|+++|+.||.|.+|+|+.+ .+|||||+|.+.++|.+|+..|| .|+.|+|.+++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~---~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN---KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 3458999999998 6999999999999999999999875 36999999999999999999999 99999999987
Q ss_pred cCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 020954 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (319)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
........... ........... . ......+.. +.
T Consensus 350 ~~~~~~~~~~~-----~~~~~~~~~d~---------~-----~~~~~r~~~---~~------------------------ 383 (481)
T TIGR01649 350 QQNVQPPREGQ-----LDDGLTSYKDY---------S-----SSRNHRFKK---PG------------------------ 383 (481)
T ss_pred cccccCCCCCc-----CcCCCcccccc---------c-----CCccccCCC---cc------------------------
Confidence 54321110000 00000000000 0 000000000 00
Q ss_pred CCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCC--ceEEEEeecC--CCCEEEEEecChHHHHHHHHHhCCCcccC
Q 020954 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPG--FLKLKIQSTY--GPPVAFVDFQDTVSSTAALNNLQGTILYS 296 (319)
Q Consensus 221 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~--i~~v~i~~~~--~~~~aFV~F~~~~~A~~Al~~lnG~~i~~ 296 (319)
........+++.+|||+|||.++|+++|+++|+.||. |+.|++..+. ++++|||+|++.++|.+||..|||+.|.+
T Consensus 384 ~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~ 463 (481)
T TIGR01649 384 SANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNE 463 (481)
T ss_pred cccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCC
Confidence 0000011246789999999999999999999999998 8889887532 35699999999999999999999999995
Q ss_pred CCCCC---eEEEEecCCC
Q 020954 297 SPTSD---GIRLEFAKSR 311 (319)
Q Consensus 297 ~~~G~---~i~V~~ak~~ 311 (319)
+. |+ .|+|+|++++
T Consensus 464 ~~-~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 464 PN-GSAPYHLKVSFSTSR 480 (481)
T ss_pred CC-CCccceEEEEeccCC
Confidence 52 22 4999999875
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=3.3e-28 Score=228.58 Aligned_cols=232 Identities=20% Similarity=0.219 Sum_probs=145.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~a~~ 141 (319)
..+|||+||++++|+++|+++|+.||.|.+|.|..+.+ +|+|||+|.+.++|.+|++.|| .++.|+|+|++.
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~--~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN--VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC--ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence 46899999999999999999999999999999877543 5789999999999999999999 236899999986
Q ss_pred CCcccCCCCCCCCcccccccCC--CCC---------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020954 142 NSRSKRSRTDDEWTGSDKKARG--PSA---------------FSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFD 204 (319)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 204 (319)
....-+...++.++-....+.. ... ........|+++..............|... .. .
T Consensus 174 ~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~---~ 248 (481)
T TIGR01649 174 TRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPH--GP---P 248 (481)
T ss_pred CCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcc--cC---C
Confidence 4431111111111100000000 000 000111122222210000000000000000 00 0
Q ss_pred CCCCCcccccccCCCCCCCCCCCCCCcCEEEEcCCCC-CCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHH
Q 020954 205 ARGGSLITTAKFNNSSAPSGPKNVTPCATLFVANLGP-TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSST 283 (319)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~ 283 (319)
.+..................+...+++++|||+||+. .+|+++|+++|+.||.|.+|+++.+ .++||||+|.+.++|.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~ 327 (481)
T TIGR01649 249 SRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQ 327 (481)
T ss_pred CCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHH
Confidence 0000000000000000011222345688999999998 6999999999999999999999984 4689999999999999
Q ss_pred HHHHHhCCCcccCCCCCCeEEEEecCCC
Q 020954 284 AALNNLQGTILYSSPTSDGIRLEFAKSR 311 (319)
Q Consensus 284 ~Al~~lnG~~i~~~~~G~~i~V~~ak~~ 311 (319)
+||+.|||..|. |+.|+|+|++..
T Consensus 328 ~Ai~~lng~~l~----g~~l~v~~s~~~ 351 (481)
T TIGR01649 328 LALTHLNGVKLF----GKPLRVCPSKQQ 351 (481)
T ss_pred HHHHHhCCCEEC----CceEEEEEcccc
Confidence 999999999999 567999999765
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=2.9e-29 Score=241.10 Aligned_cols=158 Identities=23% Similarity=0.392 Sum_probs=138.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccCC
Q 020954 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (319)
Q Consensus 70 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (319)
+|||+|||.++||++|+++|++||.|.+|+|.++ +++++|||||+|.+.++|++|++.+| .|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999999988 68999999999999999999999999 89999999875321
Q ss_pred cccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCC
Q 020954 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (319)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (319)
...+
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (562)
T TIGR01628 82 SLRR---------------------------------------------------------------------------- 85 (562)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 1000
Q ss_pred CCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec---CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCC
Q 020954 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTS 300 (319)
Q Consensus 224 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~---~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G 300 (319)
....+|||+||+.++++++|+++|+.||.|.+|++..+ ++++||||+|++.++|.+|++.|||..+.+
T Consensus 86 -----~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~---- 156 (562)
T TIGR01628 86 -----SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLND---- 156 (562)
T ss_pred -----cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecC----
Confidence 01347999999999999999999999999999999874 356799999999999999999999999994
Q ss_pred CeEEEEecCCCC
Q 020954 301 DGIRLEFAKSRM 312 (319)
Q Consensus 301 ~~i~V~~ak~~~ 312 (319)
+.|.|.....+.
T Consensus 157 ~~i~v~~~~~~~ 168 (562)
T TIGR01628 157 KEVYVGRFIKKH 168 (562)
T ss_pred ceEEEecccccc
Confidence 469998766543
No 13
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=200.96 Aligned_cols=168 Identities=25% Similarity=0.379 Sum_probs=148.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEE
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (319)
..+....|.|.-||.++|+|||+.||...|+|++|++++| +|.+.||+||.|-+.++|++|+..|| ..++|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 4555677999999999999999999999999999999999 99999999999999999999999999 88999999
Q ss_pred EcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccC
Q 020954 138 LAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFN 217 (319)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 217 (319)
||+..+...+
T Consensus 117 yARPSs~~Ik---------------------------------------------------------------------- 126 (360)
T KOG0145|consen 117 YARPSSDSIK---------------------------------------------------------------------- 126 (360)
T ss_pred eccCChhhhc----------------------------------------------------------------------
Confidence 9986443221
Q ss_pred CCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCc
Q 020954 218 NSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTI 293 (319)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~ 293 (319)
...|||.+||..+|..||+++|++||.|..-+|..+ -++|.|||.|+..++|+.||+.|||..
T Consensus 127 -------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 127 -------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred -------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 336999999999999999999999999988887654 356799999999999999999999998
Q ss_pred ccCCCCCCeEEEEecCCCCCCCC
Q 020954 294 LYSSPTSDGIRLEFAKSRMGMPR 316 (319)
Q Consensus 294 i~~~~~G~~i~V~~ak~~~~~~~ 316 (319)
-.+. -.+|.|.|+.++..+..
T Consensus 194 P~g~--tepItVKFannPsq~t~ 214 (360)
T KOG0145|consen 194 PSGC--TEPITVKFANNPSQKTN 214 (360)
T ss_pred CCCC--CCCeEEEecCCcccccc
Confidence 8766 46899999999977653
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=8.8e-29 Score=237.73 Aligned_cols=177 Identities=22% Similarity=0.371 Sum_probs=142.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----C----CcEEEEE
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----K----GSTLYID 137 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~----g~~l~v~ 137 (319)
..++|||+||+.++|+++|+++|+.||.|.++.+..+ +++++|||||+|.+.++|.+|++.++ . |+.|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 4478999999999999999999999999999999887 78899999999999999999999998 5 8888888
Q ss_pred EcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccC
Q 020954 138 LAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFN 217 (319)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 217 (319)
++..+........... . ....
T Consensus 257 ~a~~k~er~~~~~~~~----~-~~~~------------------------------------------------------ 277 (562)
T TIGR01628 257 RAQKRAEREAELRRKF----E-ELQQ------------------------------------------------------ 277 (562)
T ss_pred cccChhhhHHHHHhhH----H-hhhh------------------------------------------------------
Confidence 7765432100000000 0 0000
Q ss_pred CCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec---CCCCEEEEEecChHHHHHHHHHhCCCcc
Q 020954 218 NSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQDTVSSTAALNNLQGTIL 294 (319)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~---~~~~~aFV~F~~~~~A~~Al~~lnG~~i 294 (319)
........++|||+||+.++|+++|+++|++||.|++|+++.+ .+++||||+|.+.++|.+|++.|||+.|
T Consensus 278 ------~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~ 351 (562)
T TIGR01628 278 ------ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRML 351 (562)
T ss_pred ------hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCee
Confidence 0000113568999999999999999999999999999999874 3467999999999999999999999999
Q ss_pred cCCCCCCeEEEEecCCCC
Q 020954 295 YSSPTSDGIRLEFAKSRM 312 (319)
Q Consensus 295 ~~~~~G~~i~V~~ak~~~ 312 (319)
+ |++|.|.|++.+.
T Consensus 352 ~----gk~l~V~~a~~k~ 365 (562)
T TIGR01628 352 G----GKPLYVALAQRKE 365 (562)
T ss_pred C----CceeEEEeccCcH
Confidence 9 5679999998764
No 15
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=199.82 Aligned_cols=223 Identities=18% Similarity=0.200 Sum_probs=148.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYID 137 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~ 137 (319)
-....|||++||..+|..||+++|++||.|...+|..| +|.++|.+||.|...++|++||..|| +..+|.|.
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEE
Confidence 33578999999999999999999999999988888877 89999999999999999999999999 66789999
Q ss_pred EcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccC
Q 020954 138 LAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFN 217 (319)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 217 (319)
|+...+..+...-.. .+- ..+.....|..+... ..........+......-..+..+ ...
T Consensus 205 FannPsq~t~~a~ls-------~ly------~sp~rr~~Gp~hh~~----~r~r~~~~~~~~~~~~rfsP~~~d---~m~ 264 (360)
T KOG0145|consen 205 FANNPSQKTNQALLS-------QLY------QSPARRYGGPMHHQA----QRFRLDNLLNPHAAQARFSPMTID---GMS 264 (360)
T ss_pred ecCCcccccchhhhH-------Hhh------cCccccCCCcccchh----hhhccccccchhhhhccCCCcccc---ccc
Confidence 987543211100000 000 000000000000000 000000000000000000000000 000
Q ss_pred CCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee----cCCCCEEEEEecChHHHHHHHHHhCCCc
Q 020954 218 NSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQDTVSSTAALNNLQGTI 293 (319)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~----~~~~~~aFV~F~~~~~A~~Al~~lnG~~ 293 (319)
.-.....+.......+|||.||..+++|.-|+++|++||.|..|++++ ++.+|||||++.+.++|..||..|||+.
T Consensus 265 ~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~ 344 (360)
T KOG0145|consen 265 GLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 344 (360)
T ss_pred eeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcc
Confidence 000011122223478999999999999999999999999999999987 4567899999999999999999999999
Q ss_pred ccCCCCCCeEEEEecCCCC
Q 020954 294 LYSSPTSDGIRLEFAKSRM 312 (319)
Q Consensus 294 i~~~~~G~~i~V~~ak~~~ 312 (319)
++++ .|.|+|..++.
T Consensus 345 lg~r----vLQVsFKtnk~ 359 (360)
T KOG0145|consen 345 LGDR----VLQVSFKTNKA 359 (360)
T ss_pred ccce----EEEEEEecCCC
Confidence 9966 59999988764
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=185.34 Aligned_cols=166 Identities=26% Similarity=0.365 Sum_probs=141.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEE
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (319)
..+...|||||||+..++++.|++||-+.|.|.++++..+ +...+|||||+|.++++|+-|++.|| .|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 3455699999999999999999999999999999999988 77889999999999999999999999 99999997
Q ss_pred EcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccC
Q 020954 138 LAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFN 217 (319)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 217 (319)
.+.... ..
T Consensus 85 kas~~~-----~n------------------------------------------------------------------- 92 (203)
T KOG0131|consen 85 KASAHQ-----KN------------------------------------------------------------------- 92 (203)
T ss_pred eccccc-----cc-------------------------------------------------------------------
Confidence 654100 00
Q ss_pred CCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEE-EEee----cCCCCEEEEEecChHHHHHHHHHhCCC
Q 020954 218 NSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKL-KIQS----TYGPPVAFVDFQDTVSSTAALNNLQGT 292 (319)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v-~i~~----~~~~~~aFV~F~~~~~A~~Al~~lnG~ 292 (319)
...+..|||+||.++++|..|.++|+.||.+.+. ++++ ...++||||.|++.+.+.+|+..|||.
T Consensus 93 ----------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq 162 (203)
T KOG0131|consen 93 ----------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ 162 (203)
T ss_pred ----------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc
Confidence 0114579999999999999999999999988763 3333 245569999999999999999999999
Q ss_pred cccCCCCCCeEEEEecCCCCCCC
Q 020954 293 ILYSSPTSDGIRLEFAKSRMGMP 315 (319)
Q Consensus 293 ~i~~~~~G~~i~V~~ak~~~~~~ 315 (319)
.+.++ +|+|+|++++..|.
T Consensus 163 ~l~nr----~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 163 YLCNR----PITVSYAFKKDTKG 181 (203)
T ss_pred hhcCC----ceEEEEEEecCCCc
Confidence 99977 59999999886654
No 17
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=184.50 Aligned_cols=235 Identities=42% Similarity=0.643 Sum_probs=152.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCC---CCccEEEEEEcCHHHHHHHHHHcC-------CCc
Q 020954 63 GSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQ---NSQPFAFAVFSDQQSALGAMYALN-------KGS 132 (319)
Q Consensus 63 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~---~~~g~afV~f~~~~~A~~A~~~l~-------~g~ 132 (319)
+..++.|||||.+||.++...||+.||+.|-..+.+.|+..++ -++-+|||+|.+..+|..|++.|| .+.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 4456689999999999999999999999999999999988622 356799999999999999999999 899
Q ss_pred EEEEEEcccCCcccCCCCCCCCcccccc---cCCCCCCCCCCCC--CCC-C--CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020954 133 TLYIDLAKSNSRSKRSRTDDEWTGSDKK---ARGPSAFSRGTAD--LGI-G--SVHMPGMGNSAFNTIGYPHTQSHENFD 204 (319)
Q Consensus 133 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~-~--~~~~~~~~~~~~~~~g~~~~~~~~~~~ 204 (319)
.|+|++||++.+.++.+..........- ......++..... .+. . ....++...+.... .. .+....
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~-~~----t~~~~l 183 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKEN-DT----TKSEAL 183 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCc-cc----cchhhh
Confidence 9999999999988777665432100000 0000000000000 000 0 00000000000000 00 000000
Q ss_pred CCCCCcccccccCCCCCCCCC--CCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHH
Q 020954 205 ARGGSLITTAKFNNSSAPSGP--KNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSS 282 (319)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A 282 (319)
...+.-.+++.. ......+ .....+.||||.||..++||++|+.+|+.|-.+..++|....+.+.|||+|++.+.|
T Consensus 184 ~a~~~~~P~a~a--~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~a 261 (284)
T KOG1457|consen 184 SAPDSKAPSANA--HLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQA 261 (284)
T ss_pred hhhhhcCCcccc--hhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHH
Confidence 000000000000 0000000 222347899999999999999999999999999999998767777999999999999
Q ss_pred HHHHHHhCCCcccCCCCCCeEEE
Q 020954 283 TAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 283 ~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..||..|+|..|....+| .|+|
T Consensus 262 t~am~~lqg~~~s~~drg-g~~i 283 (284)
T KOG1457|consen 262 TDAMNHLQGNLLSSSDRG-GMHI 283 (284)
T ss_pred HHHHHHhhcceeccccCC-Cccc
Confidence 999999999999877654 3544
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=5.3e-26 Score=216.41 Aligned_cols=185 Identities=16% Similarity=0.249 Sum_probs=129.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcC------------CCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC--
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREF------------PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-- 129 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~------------G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~-- 129 (319)
.....++|||||||+++|+++|+++|+.| +.|..+.+ ++.+|||||+|.+.++|..|| .|+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~----~~~kg~afVeF~~~e~A~~Al-~l~g~ 245 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI----NKEKNFAFLEFRTVEEATFAM-ALDSI 245 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE----CCCCCEEEEEeCCHHHHhhhh-cCCCe
Confidence 34456999999999999999999999975 22333333 456899999999999999999 477
Q ss_pred --CCcEEEEEEcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020954 130 --KGSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARG 207 (319)
Q Consensus 130 --~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 207 (319)
.|+.|+|...+.......... . .. ... ...... .
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~--~-------~~--~~~----~~~~~~---------------~-------------- 281 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITP--E-------VS--QKN----PDDNAK---------------N-------------- 281 (509)
T ss_pred EeeCceeEecCccccCCccccCC--C-------CC--CCC----Cccccc---------------c--------------
Confidence 788888854322110000000 0 00 000 000000 0
Q ss_pred CCcccccccCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHH
Q 020954 208 GSLITTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSST 283 (319)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~ 283 (319)
.. ............++|||+|||..+|+++|+++|+.||.|..+.++.+ .++|||||+|.+.++|.
T Consensus 282 ---------~~-~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~ 351 (509)
T TIGR01642 282 ---------VE-KLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTD 351 (509)
T ss_pred ---------cc-cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHH
Confidence 00 00000011123678999999999999999999999999999999864 35679999999999999
Q ss_pred HHHHHhCCCcccCCCCCCeEEEEecCCC
Q 020954 284 AALNNLQGTILYSSPTSDGIRLEFAKSR 311 (319)
Q Consensus 284 ~Al~~lnG~~i~~~~~G~~i~V~~ak~~ 311 (319)
.||+.|||..|+ |+.|+|.|+...
T Consensus 352 ~A~~~l~g~~~~----~~~l~v~~a~~~ 375 (509)
T TIGR01642 352 VAIAALNGKDTG----DNKLHVQRACVG 375 (509)
T ss_pred HHHHHcCCCEEC----CeEEEEEECccC
Confidence 999999999999 557999998653
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=7.3e-26 Score=212.63 Aligned_cols=234 Identities=20% Similarity=0.263 Sum_probs=144.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.++|||+||+.++++++|+++|+.||.|..|.|..+ +|+++|||||+|.+.++|.+|+..|+ .|+.|+|.|+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999999999999999999999887 67899999999999999999999999 899999999873
Q ss_pred CCcccCCCCCCCCcccccccCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-Ccc
Q 020954 142 NSRSKRSRTDDEWTGSDKKARGPSAFS---------RGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGG-SLI 211 (319)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~ 211 (319)
......... ................ ........+....+........+.. ....+....... ...
T Consensus 266 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 340 (457)
T TIGR01622 266 STYLLDAAN--TFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQK---LQRDGIIDPNIPSRYA 340 (457)
T ss_pred CCccccchh--hhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcc---cccccccccccccccc
Confidence 221111000 0000000000000000 0000000000000000000000000 000000000000 000
Q ss_pred cccccCCCCCCCCCC--CCCCcCEEEEcCCCCCCC----------HHHHHHHhhcCCCceEEEEeecCCCCEEEEEecCh
Q 020954 212 TTAKFNNSSAPSGPK--NVTPCATLFVANLGPTCT----------EQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDT 279 (319)
Q Consensus 212 ~~~~~~~~~~~~~~~--~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~ 279 (319)
.............+. ...++.+|+|.||-...+ .+||++.|++||.|+.|.+......|++||+|.+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~ 420 (457)
T TIGR01622 341 TGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSV 420 (457)
T ss_pred ccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCH
Confidence 000000000011111 234678999999965544 36899999999999999998666778999999999
Q ss_pred HHHHHHHHHhCCCcccCCCCCCeEEEEecCC
Q 020954 280 VSSTAALNNLQGTILYSSPTSDGIRLEFAKS 310 (319)
Q Consensus 280 ~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~ 310 (319)
++|.+|++.|||+.|+ |+.|.|.|...
T Consensus 421 e~A~~A~~~lnGr~f~----gr~i~~~~~~~ 447 (457)
T TIGR01622 421 DAALAAFQALNGRYFG----GKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHHhcCcccC----CeEEEEEEEcH
Confidence 9999999999999999 56799998754
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=6.7e-26 Score=215.74 Aligned_cols=186 Identities=19% Similarity=0.246 Sum_probs=138.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
+..++|||+|||..+++++|+++|+.||.|..+.|..+ +|.++|||||+|.+.++|..|+..|+ .|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999998876 78899999999999999999999999 8999999998
Q ss_pred ccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 020954 140 KSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNS 219 (319)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (319)
.............. ...... ...+.
T Consensus 373 ~~~~~~~~~~~~~~----------------------~~~~~~--------~~~~~------------------------- 397 (509)
T TIGR01642 373 CVGANQATIDTSNG----------------------MAPVTL--------LAKAL------------------------- 397 (509)
T ss_pred ccCCCCCCcccccc----------------------cccccc--------ccccc-------------------------
Confidence 65322111100000 000000 00000
Q ss_pred CCCCCCCCCCCcCEEEEcCCCCC----------CCHHHHHHHhhcCCCceEEEEeec-------CCCCEEEEEecChHHH
Q 020954 220 SAPSGPKNVTPCATLFVANLGPT----------CTEQELTQVFSKCPGFLKLKIQST-------YGPPVAFVDFQDTVSS 282 (319)
Q Consensus 220 ~~~~~~~~~~~~~~l~V~nLp~~----------~t~~~L~~~F~~fG~i~~v~i~~~-------~~~~~aFV~F~~~~~A 282 (319)
..........++.+|+|.||... ...++|+++|++||.|+.|.|... .+.|+|||+|.+.++|
T Consensus 398 ~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A 477 (509)
T TIGR01642 398 SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSA 477 (509)
T ss_pred hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHH
Confidence 00000011234779999999642 123679999999999999999753 2357999999999999
Q ss_pred HHHHHHhCCCcccCCCCCCeEEEEecCC
Q 020954 283 TAALNNLQGTILYSSPTSDGIRLEFAKS 310 (319)
Q Consensus 283 ~~Al~~lnG~~i~~~~~G~~i~V~~ak~ 310 (319)
.+||..|||..|+ |+.|.|.|...
T Consensus 478 ~~A~~~lnGr~~~----gr~v~~~~~~~ 501 (509)
T TIGR01642 478 EKAMEGMNGRKFN----DRVVVAAFYGE 501 (509)
T ss_pred HHHHHHcCCCEEC----CeEEEEEEeCH
Confidence 9999999999999 55799998754
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.2e-26 Score=203.24 Aligned_cols=183 Identities=21% Similarity=0.321 Sum_probs=145.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
.||||++||++++.++|.++|+.+|.|..+.+..+ ++.++||+||+|.-.+++++|+...+ .|+.|+|.+|+..
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 89999999999999999999999999999999988 55789999999999999999999988 8999999999865
Q ss_pred CcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 020954 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (319)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (319)
.+.+..... .+.+..+...+...
T Consensus 86 ~r~e~~~~~-e~~~veK~~~q~~~-------------------------------------------------------- 108 (678)
T KOG0127|consen 86 ARSEEVEKG-ENKAVEKPIEQKRP-------------------------------------------------------- 108 (678)
T ss_pred ccchhcccc-cchhhhcccccCCc--------------------------------------------------------
Confidence 443311110 00011111100000
Q ss_pred CCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC---CCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG---PPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 223 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~---~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
.-..-+.+...|.|+|||+.+...+|+.+|+.||.|..|.|..... .|||||+|.+..+|..||+.|||..|+
T Consensus 109 ~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~---- 184 (678)
T KOG0127|consen 109 TKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID---- 184 (678)
T ss_pred chhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec----
Confidence 0000112366899999999999999999999999999999986332 249999999999999999999999999
Q ss_pred CCeEEEEecCCCC
Q 020954 300 SDGIRLEFAKSRM 312 (319)
Q Consensus 300 G~~i~V~~ak~~~ 312 (319)
||+|.|+||-.+.
T Consensus 185 gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 185 GRPVAVDWAVDKD 197 (678)
T ss_pred CceeEEeeecccc
Confidence 6689999998764
No 22
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.7e-26 Score=189.00 Aligned_cols=245 Identities=20% Similarity=0.299 Sum_probs=155.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC-------CCcEEEEEE
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN-------KGSTLYIDL 138 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~-------~g~~l~v~~ 138 (319)
+.|+||||-|...-.|||++.+|..||.|++|.+.+. .|.+||||||.|.+..+|+.||..|+ ....|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5699999999999999999999999999999998887 89999999999999999999999999 567799999
Q ss_pred cccCCccc--CCC-------CCCCCc---------------------------------------------ccccccC--
Q 020954 139 AKSNSRSK--RSR-------TDDEWT---------------------------------------------GSDKKAR-- 162 (319)
Q Consensus 139 a~~~~~~~--~~~-------~~~~~~---------------------------------------------~~~~~~~-- 162 (319)
++...++. |.. ...... .....+.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 86543310 000 000000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCC---CCC--CCCCCC-------------CCcc----
Q 020954 163 GPSAFSRGTADLGIGSVHMPGMGNS---------AFNTIGYPHTQ---SHE--NFDARG-------------GSLI---- 211 (319)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~g~~~~~---~~~--~~~~~~-------------~~~~---- 211 (319)
.....+......+.+-...+..... ....+|.+... ..+ .+.... +...
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0000000000001110000000000 00001111000 000 000000 0000
Q ss_pred cccc-----cCCCCC---CCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee----cCCCCEEEEEecCh
Q 020954 212 TTAK-----FNNSSA---PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQDT 279 (319)
Q Consensus 212 ~~~~-----~~~~~~---~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~----~~~~~~aFV~F~~~ 279 (319)
++.. ...++. .....+.+.+|+|||..||.+..+.||.++|-.||.|++.+++. +.+|+|+||.|+|+
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0000 000000 11124567899999999999999999999999999999999875 45678999999999
Q ss_pred HHHHHHHHHhCCCcccCCCCCCeEEEEecCCCCCCC
Q 020954 280 VSSTAALNNLQGTILYSSPTSDGIRLEFAKSRMGMP 315 (319)
Q Consensus 280 ~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~~~~~~ 315 (319)
.+|+.||.+|||+.|+-++ |+|.+.+.+...|
T Consensus 338 ~SaQaAIqAMNGFQIGMKR----LKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKR----LKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhh----hhhhhcCccccCC
Confidence 9999999999999999886 9999999887655
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=191.91 Aligned_cols=145 Identities=26% Similarity=0.489 Sum_probs=133.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccCCc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNSR 144 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~~ 144 (319)
-.|||||||..+++.+|+.||++||.|.+|.|+ |.||||..++...|+.||..|+ .|..|.|+-+++++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee------cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 479999999999999999999999999999998 6799999999999999999898 999999988876421
Q ss_pred ccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCC
Q 020954 145 SKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSG 224 (319)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (319)
T Consensus 77 -------------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 77 -------------------------------------------------------------------------------- 76 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 225 PKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 225 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+++|+|+||.+.++.+||+..|++||.|+.++|+++ |+||.|+-.++|..|++.|||++|. |+.|+
T Consensus 77 -----~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l~~~~~~----gk~m~ 143 (346)
T KOG0109|consen 77 -----ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGLDNTEFQ----GKRMH 143 (346)
T ss_pred -----CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhcccccccc----cceee
Confidence 2668999999999999999999999999999999974 9999999999999999999999999 55799
Q ss_pred EEecCCCC
Q 020954 305 LEFAKSRM 312 (319)
Q Consensus 305 V~~ak~~~ 312 (319)
|+.+.++.
T Consensus 144 vq~stsrl 151 (346)
T KOG0109|consen 144 VQLSTSRL 151 (346)
T ss_pred eeeecccc
Confidence 99998874
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.1e-24 Score=194.30 Aligned_cols=237 Identities=21% Similarity=0.248 Sum_probs=144.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
.-.|.|+|||+.+.+.+|+.+|+.||.|.+|.|.+. .|+-.|||||.|.+..+|.+||+.+| .||+|.|+||..+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 568999999999999999999999999999999877 55656999999999999999999999 9999999999655
Q ss_pred CcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC------CCCCCCCCCCCCCCCCCCccc
Q 020954 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMG----NSAFNT------IGYPHTQSHENFDARGGSLIT 212 (319)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~g~~~~~~~~~~~~~~~~~~~ 212 (319)
..-......+. ...++........-.+...+-.+..-.+.. .-...+ .+.............. ..+.
T Consensus 197 d~ye~ta~~~~--~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e-~S~~ 273 (678)
T KOG0127|consen 197 DTYEDTAHEEK--QSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEE-SSGK 273 (678)
T ss_pred ccccccchhhh--hhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccc-cccc
Confidence 43111000000 000000000000000000000000000000 000000 0000000000000000 0000
Q ss_pred ccccCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee----cCCCCEEEEEecChHHHHHHHHH
Q 020954 213 TAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQDTVSSTAALNN 288 (319)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~----~~~~~~aFV~F~~~~~A~~Al~~ 288 (319)
..+.........+.......+|||+|||+++|+++|.++|++||.|.++.|+. +..+|.|||.|.+..+|+.||++
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHh
Confidence 00000011111223334568999999999999999999999999999999886 44677999999999999999997
Q ss_pred h-----CC-CcccCCCCCCeEEEEecCCC
Q 020954 289 L-----QG-TILYSSPTSDGIRLEFAKSR 311 (319)
Q Consensus 289 l-----nG-~~i~~~~~G~~i~V~~ak~~ 311 (319)
. .| ..|. ||.|+|..|-.+
T Consensus 354 Aspa~e~g~~ll~----GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 354 ASPASEDGSVLLD----GRLLKVTLAVTR 378 (678)
T ss_pred cCccCCCceEEEe----ccEEeeeeccch
Confidence 6 34 5666 668999988654
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=4.6e-24 Score=185.43 Aligned_cols=77 Identities=27% Similarity=0.381 Sum_probs=72.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC-------CCcEEEEEEc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN-------KGSTLYIDLA 139 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~-------~g~~l~v~~a 139 (319)
.++||||-|+..+||.|++++|++||.|++|.|.++ .+.++|||||.|.+.+.|..||+.|| +..+|.|.||
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 578999999999999999999999999999999998 89999999999999999999999999 7789999999
Q ss_pred ccCCc
Q 020954 140 KSNSR 144 (319)
Q Consensus 140 ~~~~~ 144 (319)
..+..
T Consensus 204 Dtqkd 208 (510)
T KOG0144|consen 204 DTQKD 208 (510)
T ss_pred ccCCC
Confidence 76543
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=3.3e-23 Score=185.85 Aligned_cols=148 Identities=22% Similarity=0.341 Sum_probs=132.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccCCc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNSR 144 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~~ 144 (319)
..|||| +++||..|+++|+.+|.|.++++.+|. .+-|||||.|.+.++|++||..+| .|+.|+|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd-- 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD-- 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC--
Confidence 478999 999999999999999999999999997 499999999999999999999999 9999999887631
Q ss_pred ccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCC
Q 020954 145 SKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSG 224 (319)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (319)
T Consensus 76 -------------------------------------------------------------------------------- 75 (369)
T KOG0123|consen 76 -------------------------------------------------------------------------------- 75 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC--CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCe
Q 020954 225 PKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDG 302 (319)
Q Consensus 225 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~--~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~ 302 (319)
...|||+||+.+++..+|.++|+.||+|++|++..+. .++| ||+|++.++|.+|++.|||..+. |++
T Consensus 76 ------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~----~kk 144 (369)
T KOG0123|consen 76 ------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN----GKK 144 (369)
T ss_pred ------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC----CCe
Confidence 1139999999999999999999999999999998743 4668 99999999999999999999999 557
Q ss_pred EEEEecCCCCC
Q 020954 303 IRLEFAKSRMG 313 (319)
Q Consensus 303 i~V~~ak~~~~ 313 (319)
|-|.....+..
T Consensus 145 i~vg~~~~~~e 155 (369)
T KOG0123|consen 145 IYVGLFERKEE 155 (369)
T ss_pred eEEeeccchhh
Confidence 99987766543
No 27
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.90 E-value=2.4e-22 Score=162.11 Aligned_cols=206 Identities=25% Similarity=0.345 Sum_probs=146.9
Q ss_pred CcceEEEeCCCCCCCHHHHHH----HhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 67 EVRTLFVAGLPEDVKPREIYN----LFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~----~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
++.||||.||+..+..++|++ ||++||.|..|.... +.+.+|-|||.|.+.+.|..|+..|+ .|+.++|+|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k-t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK-TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC-CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 347999999999999999877 999999998877654 66778999999999999999999999 999999999
Q ss_pred cccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 020954 139 AKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNN 218 (319)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (319)
|+++++......... ....++.....-... . .....+|.... .. ...
T Consensus 87 A~s~sdii~~~~~~~-v~~~~k~~~~~~~~~--~--------------~~~~~ng~~~~-------~~---------~~~ 133 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTF-VEKEKKINGEILARI--K--------------QPLDTNGHFYN-------MN---------RMN 133 (221)
T ss_pred ccCccchhhccCcee-ccccCcccccccccc--C--------------Ccccccccccc-------cc---------ccc
Confidence 999887433211100 000111000000000 0 00000000000 00 000
Q ss_pred CCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCC
Q 020954 219 SSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSP 298 (319)
Q Consensus 219 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~ 298 (319)
.+.+......+++.+||+.|||.+++.+.|..+|.+|...+.|+++. ..++.|||+|.+...|..|...|+|..|--
T Consensus 134 ~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~-~~~~iAfve~~~d~~a~~a~~~lq~~~it~-- 210 (221)
T KOG4206|consen 134 LPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP-PRSGIAFVEFLSDRQASAAQQALQGFKITK-- 210 (221)
T ss_pred CCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEecc-CCCceeEEecchhhhhHHHhhhhccceecc--
Confidence 00001123346788999999999999999999999999999999997 455699999999999999999999999973
Q ss_pred CCCeEEEEecCC
Q 020954 299 TSDGIRLEFAKS 310 (319)
Q Consensus 299 ~G~~i~V~~ak~ 310 (319)
.+.|+|.|++.
T Consensus 211 -~~~m~i~~a~K 221 (221)
T KOG4206|consen 211 -KNTMQITFAKK 221 (221)
T ss_pred -CceEEecccCC
Confidence 34799999873
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=9.3e-23 Score=167.51 Aligned_cols=142 Identities=20% Similarity=0.307 Sum_probs=116.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcCCCcEEEEEEcccCC
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNKGSTLYIDLAKSNS 143 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~~g~~l~v~~a~~~~ 143 (319)
++++-||||||||+.+|||+-|..||++.|.|.+++|+.+ .|+|.|+....
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------e~~v~wa~~p~ 52 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------ELKVNWATAPG 52 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------hhccccccCcc
Confidence 3566799999999999999999999999999999999864 25666665421
Q ss_pred cccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCC
Q 020954 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (319)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (319)
..++.
T Consensus 53 nQsk~--------------------------------------------------------------------------- 57 (321)
T KOG0148|consen 53 NQSKP--------------------------------------------------------------------------- 57 (321)
T ss_pred cCCCC---------------------------------------------------------------------------
Confidence 11000
Q ss_pred CCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 224 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
....+..+||+.|..+++.++|++.|.+||+|.+++|++| ++||||||.|-+.++|++||..|||.+|++|
T Consensus 58 ---t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R-- 132 (321)
T KOG0148|consen 58 ---TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR-- 132 (321)
T ss_pred ---ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc--
Confidence 0011457999999999999999999999999999999974 5678999999999999999999999999955
Q ss_pred CCeEEEEecCCCCCCCC
Q 020954 300 SDGIRLEFAKSRMGMPR 316 (319)
Q Consensus 300 G~~i~V~~ak~~~~~~~ 316 (319)
.||-.||..|....+
T Consensus 133 --~IRTNWATRKp~e~n 147 (321)
T KOG0148|consen 133 --TIRTNWATRKPSEMN 147 (321)
T ss_pred --eeeccccccCccccC
Confidence 699999998875544
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=2.4e-20 Score=175.20 Aligned_cols=76 Identities=18% Similarity=0.351 Sum_probs=71.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..++|||+||+.++++++|+++|+.||.|.+++|..+ +++++|||||+|.+.++|.+|+..|| +|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 3479999999999999999999999999999999987 67899999999999999999999999 99999999987
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 53
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=3e-22 Score=184.13 Aligned_cols=164 Identities=24% Similarity=0.351 Sum_probs=135.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CC----CCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 71 LFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQ----NSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 71 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~----~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
|||.||++++|.++|..+|...|.|.++.|... .. .+.|||||+|.+.++|+.|++.|+ .|+.|.|.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 999999999999999999999999999887654 22 355999999999999999999999 999999999872
Q ss_pred CCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 020954 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (319)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
.. ..+... + .
T Consensus 598 k~----~~~~gK------~-~----------------------------------------------------------- 607 (725)
T KOG0110|consen 598 KP----ASTVGK------K-K----------------------------------------------------------- 607 (725)
T ss_pred cc----cccccc------c-c-----------------------------------------------------------
Confidence 11 100000 0 0
Q ss_pred CCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 222 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
.....++.|+|+|||+..+..+++++|+.||.|++|+|... ..+|||||+|-+..+|.+|+++|.++-+.||
T Consensus 608 ----~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGR 683 (725)
T KOG0110|consen 608 ----SKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGR 683 (725)
T ss_pred ----ccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceech
Confidence 00012568999999999999999999999999999999873 2356999999999999999999999999955
Q ss_pred CCCCeEEEEecCCCC
Q 020954 298 PTSDGIRLEFAKSRM 312 (319)
Q Consensus 298 ~~G~~i~V~~ak~~~ 312 (319)
.|.++||++..
T Consensus 684 ----rLVLEwA~~d~ 694 (725)
T KOG0110|consen 684 ----RLVLEWAKSDN 694 (725)
T ss_pred ----hhheehhccch
Confidence 59999999763
No 31
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.7e-22 Score=172.28 Aligned_cols=168 Identities=15% Similarity=0.240 Sum_probs=136.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
..+||||.|.+.+.||.|+..|..||.|++|.+.+| +++++|||||+|+-.+.|+.|++.|| +||.|+|..-..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 367999999999999999999999999999999999 99999999999999999999999999 999999842111
Q ss_pred CCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 020954 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (319)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
-.. .....+
T Consensus 193 mpQ--AQpiID--------------------------------------------------------------------- 201 (544)
T KOG0124|consen 193 MPQ--AQPIID--------------------------------------------------------------------- 201 (544)
T ss_pred Ccc--cchHHH---------------------------------------------------------------------
Confidence 000 000000
Q ss_pred CCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee----cCCCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 222 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~----~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
....+...-++|||..+..+.+|+||+.+|+-||+|++|++-+ ...+||+||+|.+..+...|+..||=+.+++.
T Consensus 202 -~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ 280 (544)
T KOG0124|consen 202 -MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ 280 (544)
T ss_pred -HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccc
Confidence 0000111245899999999999999999999999999999986 34567999999999999999999999999944
Q ss_pred CCCCeEEEEecCCC
Q 020954 298 PTSDGIRLEFAKSR 311 (319)
Q Consensus 298 ~~G~~i~V~~ak~~ 311 (319)
-|+|.-+-.+
T Consensus 281 ----yLRVGk~vTP 290 (544)
T KOG0124|consen 281 ----YLRVGKCVTP 290 (544)
T ss_pred ----eEecccccCC
Confidence 5888765544
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.5e-20 Score=167.33 Aligned_cols=163 Identities=21% Similarity=0.407 Sum_probs=136.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccCCc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNSR 144 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~~ 144 (319)
..|||.||+.+++..+|+++|+.||.|.+|++..+...++|| ||+|.+.++|++|++.+| .|+.|.|.....+..
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 339999999999999999999999999999999994449999 999999999999999999 999999977654332
Q ss_pred ccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCC
Q 020954 145 SKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSG 224 (319)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (319)
..+.... .
T Consensus 156 r~~~~~~-~----------------------------------------------------------------------- 163 (369)
T KOG0123|consen 156 REAPLGE-Y----------------------------------------------------------------------- 163 (369)
T ss_pred hcccccc-h-----------------------------------------------------------------------
Confidence 2111110 0
Q ss_pred CCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec---CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCC
Q 020954 225 PKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSD 301 (319)
Q Consensus 225 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~---~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~ 301 (319)
...-+.++|.|++.++++++|.++|+.||.|.++.++.+ ..++|+||.|++.++|..|++.|||..+++.
T Consensus 164 ---~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~---- 236 (369)
T KOG0123|consen 164 ---KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDK---- 236 (369)
T ss_pred ---hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCcc----
Confidence 001446999999999999999999999999999999873 3466999999999999999999999999955
Q ss_pred eEEEEecCCC
Q 020954 302 GIRLEFAKSR 311 (319)
Q Consensus 302 ~i~V~~ak~~ 311 (319)
.+.|.-+.++
T Consensus 237 ~~~V~~aqkk 246 (369)
T KOG0123|consen 237 ELYVGRAQKK 246 (369)
T ss_pred ceeecccccc
Confidence 5888877663
No 33
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=3e-19 Score=138.98 Aligned_cols=169 Identities=22% Similarity=0.334 Sum_probs=126.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
..++|||||||.+|.+.||.+||.+||.|..|.|+...+ ...||||+|++..+|+.||..-+ .|..|+|+|+...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 458999999999999999999999999999999875422 36799999999999999997766 9999999998753
Q ss_pred CcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 020954 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (319)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (319)
......... ..+.+.- |.......+.
T Consensus 84 r~s~~~~G~---------------------y~gggrg-------------Ggg~gg~rgp-------------------- 109 (241)
T KOG0105|consen 84 RSSSDRRGS---------------------YSGGGRG-------------GGGGGGRRGP-------------------- 109 (241)
T ss_pred Ccccccccc---------------------cCCCCCC-------------CCCCCcccCC--------------------
Confidence 210000000 0000000 0000000000
Q ss_pred CCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccC
Q 020954 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYS 296 (319)
Q Consensus 223 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~ 296 (319)
..-.....|.|.+||.+-+|++|+++..+.|.|....+.++. .+.|+|...++..-|+..|+...+..
T Consensus 110 ---psrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 110 ---PSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ---cccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceeeeeeehhhHHHHHHhhccccccC
Confidence 011125679999999999999999999999999999988753 89999999999999999999888765
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=2e-20 Score=167.83 Aligned_cols=227 Identities=16% Similarity=0.195 Sum_probs=138.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
+.||||||.+++++++|+.+|+.||.|+.|.+..+ +|.++||+||+|.+.++|++|+..|| .|+.|+|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 55999999999999999999999999999999998 99999999999999999999999999 9999999776543
Q ss_pred CcccCCCCCCCCcccccccCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccC
Q 020954 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIG-----SVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFN 217 (319)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 217 (319)
...+..... ..+.-.....+.+.+ ..|.. .....+.........+...... ........+......
T Consensus 359 ~~~~~a~~~----~~d~D~~d~~gl~~~--~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~---~~~~~~~~~~~~~~~ 429 (549)
T KOG0147|consen 359 VDTKEAAVT----QFDFDEDDRQGLSLG--SGGRNQLMAKLAEGKGRSLPSTAISALLLLAK---LASAAQFNGVVRVRS 429 (549)
T ss_pred ccccccccc----ccccchhhccccccc--cccHHHHHHHHhccCCccccchhhhHHHhccc---cchHHhhcCCcCccc
Confidence 322111000 000000000000000 00000 0000000000000000000000 000000000000000
Q ss_pred CCCCCCCCCCCCCcCEEEEcCCCCCCC----------HHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHH
Q 020954 218 NSSAPSGPKNVTPCATLFVANLGPTCT----------EQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALN 287 (319)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~ 287 (319)
..+....+.-+.++.++.++|+-...| .+++.+-+++||.|..|.+.++. -|+.||.|.+.++|..|+.
T Consensus 430 ~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns-~g~VYvrc~s~~~A~~a~~ 508 (549)
T KOG0147|consen 430 VDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS-AGCVYVRCPSAEAAGTAVK 508 (549)
T ss_pred cCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC-CceEEEecCcHHHHHHHHH
Confidence 011111222235677888888854322 36788889999999999998844 3899999999999999999
Q ss_pred HhCCCcccCCCCCCeEEEEecC
Q 020954 288 NLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 288 ~lnG~~i~~~~~G~~i~V~~ak 309 (319)
+|||.+|. ||.|.+.|-.
T Consensus 509 alhgrWF~----gr~Ita~~~~ 526 (549)
T KOG0147|consen 509 ALHGRWFA----GRMITAKYLP 526 (549)
T ss_pred HHhhhhhc----cceeEEEEee
Confidence 99999999 5579998853
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=8.3e-21 Score=170.32 Aligned_cols=179 Identities=21% Similarity=0.298 Sum_probs=139.3
Q ss_pred CCCCCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEE
Q 020954 61 AYGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLY 135 (319)
Q Consensus 61 p~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~ 135 (319)
....+...||||+--|...++..+|+++|+.+|.|..|.|+.| ++.++|.|||+|.|.++...||..-. .|.+|.
T Consensus 172 l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~ 251 (549)
T KOG0147|consen 172 LSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVI 251 (549)
T ss_pred CCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeE
Confidence 3344566799999999999999999999999999999999998 88999999999999999999994433 788888
Q ss_pred EEEcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020954 136 IDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAK 215 (319)
Q Consensus 136 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 215 (319)
|.......... .. . ....++.+
T Consensus 252 vq~sEaeknr~---a~------------~-----s~a~~~k~-------------------------------------- 273 (549)
T KOG0147|consen 252 VQLSEAEKNRA---AN------------A-----SPALQGKG-------------------------------------- 273 (549)
T ss_pred ecccHHHHHHH---Hh------------c-----cccccccc--------------------------------------
Confidence 85532211000 00 0 00000000
Q ss_pred cCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCC
Q 020954 216 FNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQG 291 (319)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG 291 (319)
...+-..|||+||.+++++++|+.+|+.||.|..|.+..+ .+++||||+|.+.++|.+|++.|||
T Consensus 274 -----------~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng 342 (549)
T KOG0147|consen 274 -----------FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG 342 (549)
T ss_pred -----------cccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc
Confidence 0012223999999999999999999999999999998864 4577999999999999999999999
Q ss_pred CcccCCCCCCeEEEEecCCCC
Q 020954 292 TILYSSPTSDGIRLEFAKSRM 312 (319)
Q Consensus 292 ~~i~~~~~G~~i~V~~ak~~~ 312 (319)
++|. |+.|+|+.-..+.
T Consensus 343 felA----Gr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 343 FELA----GRLIKVSVVTERV 359 (549)
T ss_pred ceec----CceEEEEEeeeec
Confidence 9999 6679998765543
No 36
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.80 E-value=2e-19 Score=156.08 Aligned_cols=166 Identities=18% Similarity=0.229 Sum_probs=132.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEccc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKS 141 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~ 141 (319)
+..+||||+|+++++++.|++.|.+||+|.+|.++++ +++++||+||+|.+.+...++|..-. .|+.|.+.-+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 5689999999999999999999999999999999998 89999999999999998888886544 777776655543
Q ss_pred CCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 020954 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (319)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
.....+...
T Consensus 85 r~~~~~~~~----------------------------------------------------------------------- 93 (311)
T KOG4205|consen 85 REDQTKVGR----------------------------------------------------------------------- 93 (311)
T ss_pred ccccccccc-----------------------------------------------------------------------
Confidence 211110000
Q ss_pred CCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 222 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
......|||++|+.++++++|++.|.+||.|..+.++.+. .++|+||+|++.+++.+++. ..-+.|.
T Consensus 94 ------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~-- 164 (311)
T KOG4205|consen 94 ------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN-- 164 (311)
T ss_pred ------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeec--
Confidence 0126689999999999999999999999999888887643 45699999999999999887 6666666
Q ss_pred CCCCeEEEEecCCCCCC
Q 020954 298 PTSDGIRLEFAKSRMGM 314 (319)
Q Consensus 298 ~~G~~i~V~~ak~~~~~ 314 (319)
|+.+.|.-|..+..+
T Consensus 165 --gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 165 --GKKVEVKRAIPKEVM 179 (311)
T ss_pred --CceeeEeeccchhhc
Confidence 446777777666444
No 37
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.79 E-value=9.3e-18 Score=145.48 Aligned_cols=189 Identities=23% Similarity=0.334 Sum_probs=141.3
Q ss_pred cceEEEeCCCCC-CCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 68 VRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 68 ~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
+..|.|.||..+ ||.+.|..+|..||.|..|+|..+++ --|+|+|.|...|+.|++.|+ .|+.|+|.++|+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 578899999866 99999999999999999999998765 239999999999999999999 9999999999875
Q ss_pred Ccc-cCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 020954 143 SRS-KRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (319)
Q Consensus 143 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
.-. .+.+..+. +... .++ ...... .+.+..
T Consensus 374 ~vqlp~egq~d~------------glT~-----dy~-----~spLhr---------------------------fkkpgs 404 (492)
T KOG1190|consen 374 NVQLPREGQEDQ------------GLTK-----DYG-----NSPLHR---------------------------FKKPGS 404 (492)
T ss_pred cccCCCCCCccc------------cccc-----cCC-----CCchhh---------------------------ccCccc
Confidence 542 22221110 0000 000 000000 000000
Q ss_pred CCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCC
Q 020954 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSD 301 (319)
Q Consensus 222 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~ 301 (319)
..-....+++.+|++.|+|.+++||+|+++|..-|..++......+.+.+|.+.+++.|+|..|+..|+++.+++. +
T Consensus 405 KN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen---~ 481 (492)
T KOG1190|consen 405 KNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGEN---H 481 (492)
T ss_pred ccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCC---c
Confidence 1111234578899999999999999999999999987666555545667999999999999999999999999975 3
Q ss_pred eEEEEecCCC
Q 020954 302 GIRLEFAKSR 311 (319)
Q Consensus 302 ~i~V~~ak~~ 311 (319)
-|||+|+|+-
T Consensus 482 hlRvSFSks~ 491 (492)
T KOG1190|consen 482 HLRVSFSKST 491 (492)
T ss_pred eEEEEeeccc
Confidence 7999999863
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.77 E-value=8.3e-18 Score=155.15 Aligned_cols=200 Identities=25% Similarity=0.299 Sum_probs=133.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
..+.|+|+|||..+..++|..+|..||.|..+.|.. .| --++|+|.+..+|+.|+..|. ....+++.|+...
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~-~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP-GG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCc-cc---ceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 347789999999999999999999999999986642 22 129999999999999999999 6677888887554
Q ss_pred CcccCCCCCCCCc-cccc-ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 020954 143 SRSKRSRTDDEWT-GSDK-KARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (319)
Q Consensus 143 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
....-........ ...+ ......... ...+.- .... .......
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s---~~d~~v------------------~eD~--------------d~te~ss 504 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVS---AEDGQV------------------EEDK--------------DPTEESS 504 (725)
T ss_pred hccCCccccccccccccccccCcceecc---cccccc------------------cccC--------------Ccccccc
Confidence 3321111111100 0000 000000000 000000 0000 0000000
Q ss_pred CCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC-------CCEEEEEecChHHHHHHHHHhCCCc
Q 020954 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG-------PPVAFVDFQDTVSSTAALNNLQGTI 293 (319)
Q Consensus 221 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~-------~~~aFV~F~~~~~A~~Al~~lnG~~ 293 (319)
...........++|||+||++++|.++|..+|...|.|.++.|..... .|||||+|.+.++|++|++.|+|+.
T Consensus 505 ~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv 584 (725)
T KOG0110|consen 505 LARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV 584 (725)
T ss_pred chhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce
Confidence 000001111233499999999999999999999999999999876432 3899999999999999999999999
Q ss_pred ccCCCCCCeEEEEecC
Q 020954 294 LYSSPTSDGIRLEFAK 309 (319)
Q Consensus 294 i~~~~~G~~i~V~~ak 309 (319)
|. |+.|.|+++.
T Consensus 585 ld----GH~l~lk~S~ 596 (725)
T KOG0110|consen 585 LD----GHKLELKISE 596 (725)
T ss_pred ec----CceEEEEecc
Confidence 99 7789999998
No 39
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.77 E-value=2.7e-17 Score=142.58 Aligned_cols=219 Identities=18% Similarity=0.179 Sum_probs=138.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~a~ 140 (319)
..-.++|+|+-+.|+-|-|+.+|++||.|..|.-...+...+ |+|+|.|.+.|+.|...|+ ..+.|+|+|++
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQ--ALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQ--ALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchh--hhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 345678999999999999999999999997765554333333 9999999999999999988 66789999987
Q ss_pred cCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 020954 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (319)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
......+-..+..++-+.-.+.. ++...+... .......+.+.... .......+.........
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~------gd~~p~l~~-------~~~aa~~~~~~~~g----~p~aip~~~~~a~~a~~ 289 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPV------GDGQPSLDQ-------LMAAAFGSVPAVHG----APLAIPSGAAGANAADG 289 (492)
T ss_pred cccceeeccccccccccCCCCCC------Cccccccch-------hhhccccccccccC----CcccCCccchhhccccc
Confidence 65443222221111100000000 000000000 00000001110000 00000000000000000
Q ss_pred CCCCCCCCCCcCEEEEcCCCCC-CCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 221 APSGPKNVTPCATLFVANLGPT-CTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 221 ~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
....+. .+++|.|.||... +|.+-|..+|+-||+|.+|+|+.++ +..|.|+|.|...|+-|++.|+|..+.
T Consensus 290 ~~~~~~---~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-kd~ALIQmsd~~qAqLA~~hL~g~~l~---- 361 (492)
T KOG1190|consen 290 KIESPS---ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-KDNALIQMSDGQQAQLAMEHLEGHKLY---- 361 (492)
T ss_pred ccccCC---CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-CcceeeeecchhHHHHHHHHhhcceec----
Confidence 000111 1678889998865 8999999999999999999999843 368999999999999999999999999
Q ss_pred CCeEEEEecCCCC
Q 020954 300 SDGIRLEFAKSRM 312 (319)
Q Consensus 300 G~~i~V~~ak~~~ 312 (319)
|++|+|.|+|-..
T Consensus 362 gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 362 GKKLRVTLSKHTN 374 (492)
T ss_pred CceEEEeeccCcc
Confidence 5579999998764
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=1.3e-17 Score=130.91 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=73.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.+++|||+||+.++||++|+++|++||.|++|+++.+ .+++||||+|.+.++|++||+.|||..|. |+.|+|
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~----Gr~l~V 108 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN----GRHIRV 108 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 4678999999999999999999999999999999864 35679999999999999999999999999 557999
Q ss_pred EecCCCCCC
Q 020954 306 EFAKSRMGM 314 (319)
Q Consensus 306 ~~ak~~~~~ 314 (319)
+|++.+...
T Consensus 109 ~~a~~~~~~ 117 (144)
T PLN03134 109 NPANDRPSA 117 (144)
T ss_pred EeCCcCCCC
Confidence 999876543
No 41
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.74 E-value=3.1e-16 Score=137.15 Aligned_cols=224 Identities=18% Similarity=0.183 Sum_probs=135.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhh-cCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFR-EFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
....|.+||.|||+++.+.+|++||+ +.|+|+.|.|..| .|+.+|||.|+|++.|.+++|++.|| .|+.|.|.-
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 34458899999999999999999998 5899999999999 99999999999999999999999999 999999965
Q ss_pred cccCCcccCCCCC-CCCcccccccCCCCCCCCCCCCC------CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCC
Q 020954 139 AKSNSRSKRSRTD-DEWTGSDKKARGPSAFSRGTADL------GIGSVHMPGMGNSAF-----NTIGYPHTQSHENFDAR 206 (319)
Q Consensus 139 a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~ 206 (319)
........+.+.. +.............+........ ..++........+.. ..+.+...+.+..+...
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 4332211111000 00000000000000000000000 000000000000000 00000000000000000
Q ss_pred CCCcccccccCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee---cCCCCEEEEEecChHHHH
Q 020954 207 GGSLITTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS---TYGPPVAFVDFQDTVSST 283 (319)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~---~~~~~~aFV~F~~~~~A~ 283 (319)
. ..-.+... -..+....+||.||...+....|++.|.-.|.|..|.+-- ...++|+.++|+++-+|.
T Consensus 201 ~-------~Flr~~h~---f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveav 270 (608)
T KOG4212|consen 201 A-------SFLRSLHI---FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAV 270 (608)
T ss_pred h-------hhhhhccC---CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHH
Confidence 0 00000000 1123466899999999999999999999999999988754 235669999999999999
Q ss_pred HHHHHhCCCcccCCC
Q 020954 284 AALNNLQGTILYSSP 298 (319)
Q Consensus 284 ~Al~~lnG~~i~~~~ 298 (319)
.||..|++.-+.+++
T Consensus 271 qaIsml~~~g~~~~~ 285 (608)
T KOG4212|consen 271 QAISMLDRQGLFDRR 285 (608)
T ss_pred HHHHhhccCCCcccc
Confidence 999999987766553
No 42
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=7.7e-18 Score=137.55 Aligned_cols=161 Identities=21% Similarity=0.347 Sum_probs=123.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccCCc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNSR 144 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~~ 144 (319)
..||||+|++.+.+.+|..||..||.|..+.++ .||+||+|.+..+|..|+..+| +|..+.|+|++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 468999999999999999999999999999997 5899999999999999999999 555588888764321
Q ss_pred ccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCC
Q 020954 145 SKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSG 224 (319)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (319)
...... .|+ .. +... ..
T Consensus 76 ~~g~~~-------------------------~g~-r~-------------~~~~------------------------~~ 92 (216)
T KOG0106|consen 76 GRGRPR-------------------------GGD-RR-------------SDSR------------------------RY 92 (216)
T ss_pred ccCCCC-------------------------CCC-cc-------------chhh------------------------cc
Confidence 110000 000 00 0000 00
Q ss_pred CCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 225 PKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 225 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.......+.|+|.|+...+.+++|.+.|+++|.+....+ ..+++||+|.+.++|.+|++.|+|..+.++ .|+
T Consensus 93 ~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~----~l~ 164 (216)
T KOG0106|consen 93 RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGR----RIS 164 (216)
T ss_pred CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCc----eee
Confidence 001123678999999999999999999999999955544 345999999999999999999999999955 688
Q ss_pred EE
Q 020954 305 LE 306 (319)
Q Consensus 305 V~ 306 (319)
+.
T Consensus 165 ~~ 166 (216)
T KOG0106|consen 165 VE 166 (216)
T ss_pred ec
Confidence 84
No 43
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.74 E-value=1.3e-16 Score=135.91 Aligned_cols=193 Identities=16% Similarity=0.191 Sum_probs=136.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCc--------cEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGY--------ESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGS 132 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v--------~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~ 132 (319)
.-+..|||+|||.++|.+++.++|++||.| -.|+|.++ .|+-+|=|++.|-..+++..|+..|+ .|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 345679999999999999999999999987 34777777 89999999999999999999999999 999
Q ss_pred EEEEEEcccCCcccCCCCCCC--CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 020954 133 TLYIDLAKSNSRSKRSRTDDE--WTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSL 210 (319)
Q Consensus 133 ~l~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 210 (319)
.|+|+.|+-.......-.... .....++++..+. ...+... . +
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~-------k~~dw~p---------------d---------~---- 256 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQ-------KLLDWRP---------------D---------R---- 256 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHH-------hhcccCC---------------C---------c----
Confidence 999999876443211111000 0000011100000 0000000 0 0
Q ss_pred ccccccCCCCCCCCCCCCCCcCEEEEcCCCC----CCC-------HHHHHHHhhcCCCceEEEEeecCCCCEEEEEecCh
Q 020954 211 ITTAKFNNSSAPSGPKNVTPCATLFVANLGP----TCT-------EQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDT 279 (319)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~----~~t-------~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~ 279 (319)
..+.-....++|.|+||-. ..+ +++|++-+++||.|.+|.|......|.+-|.|.|.
T Consensus 257 ------------~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~ 324 (382)
T KOG1548|consen 257 ------------DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNN 324 (382)
T ss_pred ------------cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCCh
Confidence 0000011367899999853 233 46777889999999999999777788999999999
Q ss_pred HHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 280 VSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 280 ~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
++|..||+.|+|+.|+ ||.|..+...
T Consensus 325 eeA~~ciq~m~GR~fd----gRql~A~i~D 350 (382)
T KOG1548|consen 325 EEADQCIQTMDGRWFD----GRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHhcCeeec----ceEEEEEEeC
Confidence 9999999999999999 5578877543
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=4.8e-17 Score=127.66 Aligned_cols=78 Identities=21% Similarity=0.341 Sum_probs=72.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
....++|||+||+.+++|++|+++|++||.|.++.|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 445689999999999999999999999999999999887 78999999999999999999999998 899999999
Q ss_pred cccC
Q 020954 139 AKSN 142 (319)
Q Consensus 139 a~~~ 142 (319)
++..
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8753
No 45
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.72 E-value=3.8e-15 Score=128.03 Aligned_cols=240 Identities=18% Similarity=0.153 Sum_probs=147.4
Q ss_pred CCCCCcceEEEeCCC--CCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEE
Q 020954 63 GSYDEVRTLFVAGLP--EDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTL 134 (319)
Q Consensus 63 ~~~~~~~~l~V~nLp--~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l 134 (319)
+....++.|.+.=|. +.+|.|-|+.++...|.|..|.|...+| --|.|+|++.+.|++|.+.|| .-.+|
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc---eeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 444555666665554 5699999999999999999998876533 349999999999999999999 66789
Q ss_pred EEEEcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCccc
Q 020954 135 YIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFN--TIGYPHTQSHENFDARGGSLIT 212 (319)
Q Consensus 135 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~ 212 (319)
+|+||+...........+.|+-+....+...+.-+. .....+.....+...+.+. ..++..-...+.......+-..
T Consensus 192 KIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~-~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~ 270 (494)
T KOG1456|consen 192 KIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRN-HYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRD 270 (494)
T ss_pred EEEecCcceeeeeecCCccccccCCCCCCCCCCCCC-CCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcc
Confidence 999998765533333333343222111111000000 0000000000000000000 0011110000000000000000
Q ss_pred ccccCCCCCCCCCCCCCCcCEEEEcCCCCC-CCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCC
Q 020954 213 TAKFNNSSAPSGPKNVTPCATLFVANLGPT-CTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQG 291 (319)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG 291 (319)
..... .....+....+++++.|.+|... ++.+.|..+|..||.|.+|++++ ...+.|.|++.|..+.++|+..||+
T Consensus 271 ~~~~~--~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemgd~~aver~v~hLnn 347 (494)
T KOG1456|consen 271 GYRDG--RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMGDAYAVERAVTHLNN 347 (494)
T ss_pred ccccC--CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcCcHHHHHHHHHHhcc
Confidence 00000 00122244557889999999975 78899999999999999999998 4556999999999999999999999
Q ss_pred CcccCCCCCCeEEEEecCCCCC
Q 020954 292 TILYSSPTSDGIRLEFAKSRMG 313 (319)
Q Consensus 292 ~~i~~~~~G~~i~V~~ak~~~~ 313 (319)
..+. |.+|.|.++|....
T Consensus 348 ~~lf----G~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 348 IPLF----GGKLNVCVSKQNFV 365 (494)
T ss_pred Cccc----cceEEEeecccccc
Confidence 9998 55799999987643
No 46
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.8e-15 Score=129.60 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=69.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
..-.+|||..+.++.+|+||+.+|+.||+|..|++-+. .+.++||+||+|.+..+-..|+..|| +|..|+|..+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 34588999999999999999999999999999999887 67789999999999999999999999 9999999776
Q ss_pred cc
Q 020954 140 KS 141 (319)
Q Consensus 140 ~~ 141 (319)
..
T Consensus 288 vT 289 (544)
T KOG0124|consen 288 VT 289 (544)
T ss_pred cC
Confidence 43
No 47
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.69 E-value=5.4e-15 Score=129.45 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=67.7
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
....++|||+|||+++||+.|++-|..||.|..+.|+. .++..+.|.|.++++|++|+..|||..+. ||.|+|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime-~GkskGVVrF~s~edAEra~a~Mngs~l~----Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME-NGKSKGVVRFFSPEDAERACALMNGSRLD----GRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc-cCCccceEEecCHHHHHHHHHHhccCccc----Cceeeeee
Confidence 34578999999999999999999999999999999965 44456799999999999999999999999 55699998
Q ss_pred c
Q 020954 308 A 308 (319)
Q Consensus 308 a 308 (319)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 4
No 48
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.64 E-value=8.6e-15 Score=130.32 Aligned_cols=155 Identities=17% Similarity=0.193 Sum_probs=113.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEcccCCcc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKSNSRS 145 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~~~~~ 145 (319)
--|-+.+||+++|++||+++|+.++ |+++.+.+.+|+..|-|||+|.+.+++++|++.-. ..+-|.|--+......
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d 89 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEAD 89 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcccc
Confidence 5677899999999999999999987 88888888899999999999999999999997665 6666776444321110
Q ss_pred cCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCC
Q 020954 146 KRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGP 225 (319)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (319)
.-. +. ..+
T Consensus 90 ~~~-------------~~-----------------------------------------------------------~g~ 97 (510)
T KOG4211|consen 90 WVM-------------RP-----------------------------------------------------------GGP 97 (510)
T ss_pred ccc-------------cC-----------------------------------------------------------CCC
Confidence 000 00 000
Q ss_pred CCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceE-EEEee---cCCCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 226 KNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLK-LKIQS---TYGPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 226 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~-v~i~~---~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
.......+|-+++||+.||++||.++|+..--+.. |.+.. .+..+-|||+|++.++|++||. -|-..|+.+
T Consensus 98 ~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhR 172 (510)
T KOG4211|consen 98 NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHR 172 (510)
T ss_pred CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccc
Confidence 00013558999999999999999999998744444 22222 2344599999999999999998 455566644
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=1e-15 Score=105.32 Aligned_cols=67 Identities=33% Similarity=0.510 Sum_probs=60.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec---CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 234 LFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 234 l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~---~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
|||+|||.++|+++|+++|++||.|..+++..+ ..+++|||+|.+.++|.+|++.|||..++++ .|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~----~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGR----KIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE----EEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECcc----CcC
Confidence 799999999999999999999999999999884 2344999999999999999999999999944 565
No 50
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=1.5e-15 Score=135.92 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=72.5
Q ss_pred CCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCe
Q 020954 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDG 302 (319)
Q Consensus 227 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~ 302 (319)
.....++|||+|||.++|+++|+++|+.||.|++|+|+.+. +++||||+|.+.++|.+||+.|||..|. |++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~----gr~ 178 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR----NKR 178 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC----Cce
Confidence 34458899999999999999999999999999999998643 4579999999999999999999999999 557
Q ss_pred EEEEecCCC
Q 020954 303 IRLEFAKSR 311 (319)
Q Consensus 303 i~V~~ak~~ 311 (319)
|+|+|++..
T Consensus 179 i~V~~a~p~ 187 (346)
T TIGR01659 179 LKVSYARPG 187 (346)
T ss_pred eeeeccccc
Confidence 999999764
No 51
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1e-15 Score=129.52 Aligned_cols=82 Identities=21% Similarity=0.286 Sum_probs=73.7
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec--CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST--YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~--~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
-++|+|+|||+...|-||+.+|.+||.|.+|.|+.+ .+||||||+|++.+||++|.++|||..|. ||+|.|..|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE----GRkIEVn~A 171 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE----GRKIEVNNA 171 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee----ceEEEEecc
Confidence 458999999999999999999999999999999863 35789999999999999999999999999 668999999
Q ss_pred CCCCCCCC
Q 020954 309 KSRMGMPR 316 (319)
Q Consensus 309 k~~~~~~~ 316 (319)
..+-..+|
T Consensus 172 TarV~n~K 179 (376)
T KOG0125|consen 172 TARVHNKK 179 (376)
T ss_pred chhhccCC
Confidence 88754443
No 52
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=9.9e-16 Score=118.62 Aligned_cols=77 Identities=31% Similarity=0.498 Sum_probs=71.0
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKS 310 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~ 310 (319)
.+.|||+||+.++++.||..+|..||.|..|+|.. ...+||||+|++..+|..|+..|||+.|.+. .|+|++++.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~----r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGS----RIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCc----eEEEEeecC
Confidence 67899999999999999999999999999999987 4567999999999999999999999999965 599999886
Q ss_pred CC
Q 020954 311 RM 312 (319)
Q Consensus 311 ~~ 312 (319)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 54
No 53
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=2.1e-15 Score=126.52 Aligned_cols=75 Identities=24% Similarity=0.376 Sum_probs=68.9
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC-CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~-~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
.++|||+||++++|+++|+++|+.||.|++|+|..+. .++||||+|.+.++|..||. |||..|. |+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~----gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV----DQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC----CceEEEEecc
Confidence 5689999999999999999999999999999998865 46799999999999999996 9999999 5579999987
Q ss_pred C
Q 020954 310 S 310 (319)
Q Consensus 310 ~ 310 (319)
+
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 4
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.59 E-value=4.5e-15 Score=102.07 Aligned_cols=65 Identities=31% Similarity=0.532 Sum_probs=60.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEE
Q 020954 71 LFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (319)
Q Consensus 71 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~ 135 (319)
|||+|||.++++++|+++|+.||.|..+.+..+ .+..+|||||+|.+.++|++|++.++ .|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999985 88899999999999999999999998 676664
No 55
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.59 E-value=9.8e-15 Score=137.41 Aligned_cols=70 Identities=33% Similarity=0.451 Sum_probs=65.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcC--CCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREF--PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..++|||+||+.++++++|+++|+.| |.|+.|++. ++||||+|.+.++|++|++.|| .|+.|+|.|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 45899999999999999999999999 999999876 5799999999999999999999 99999999997
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
..
T Consensus 306 p~ 307 (578)
T TIGR01648 306 PV 307 (578)
T ss_pred CC
Confidence 64
No 56
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=1.7e-15 Score=122.85 Aligned_cols=74 Identities=23% Similarity=0.351 Sum_probs=69.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~ 141 (319)
-++||||+|++.++.|+|+++|++||+|++..|+.| +|++|||+||+|+|.++|.+|++.-| +||.-.|++|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 478999999999999999999999999999999988 99999999999999999999998888 999999988764
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=4e-14 Score=115.44 Aligned_cols=78 Identities=29% Similarity=0.412 Sum_probs=72.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
.++..+|-|.||+.+++|++|++||..||.|..|.|.+| +|.++|||||.|.+.++|.+||..|| ..-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 456789999999999999999999999999999999888 99999999999999999999999999 556799999
Q ss_pred cccC
Q 020954 139 AKSN 142 (319)
Q Consensus 139 a~~~ 142 (319)
++..
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9863
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=8.7e-15 Score=107.46 Aligned_cols=76 Identities=25% Similarity=0.403 Sum_probs=68.1
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCC----CEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGP----PVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~----~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.++||||+||.+.++||+|.++|++.|.|.+|-+--++.+ ||+||+|-+.++|..|++.+||+.+.++ +|+|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr----~ir~ 110 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR----PIRI 110 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc----ceee
Confidence 4889999999999999999999999999999987554433 3999999999999999999999999977 5999
Q ss_pred EecC
Q 020954 306 EFAK 309 (319)
Q Consensus 306 ~~ak 309 (319)
+|.-
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 9853
No 59
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.1e-14 Score=118.62 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=71.8
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..++|-|.||+.+++|++|+++|.+||.|.+|.|..++ .+|||||+|.+.++|++||+.|||+-++.-. |+|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LI----Lrv 263 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLI----LRV 263 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEE----EEE
Confidence 57789999999999999999999999999999998755 4569999999999999999999999999774 999
Q ss_pred EecCCC
Q 020954 306 EFAKSR 311 (319)
Q Consensus 306 ~~ak~~ 311 (319)
+|++.+
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999975
No 60
>PLN03213 repressor of silencing 3; Provisional
Probab=99.56 E-value=1.6e-14 Score=128.40 Aligned_cols=78 Identities=26% Similarity=0.370 Sum_probs=71.8
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecCh--HHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDT--VSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~--~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
...+|||+||.+++|+++|+.+|+.||.|.+|.|++..++|||||+|.+. .++.+||..|||..+. |+.|+|.-
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK----GR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK----GGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec----CceeEEee
Confidence 35689999999999999999999999999999999888889999999987 7899999999999999 55799998
Q ss_pred cCCC
Q 020954 308 AKSR 311 (319)
Q Consensus 308 ak~~ 311 (319)
||..
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8764
No 61
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=3.6e-14 Score=129.46 Aligned_cols=182 Identities=21% Similarity=0.286 Sum_probs=128.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
......+||++||..++++++.++...||.+....+..+ +|.++||||.+|.+......|+..|| .++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 444688999999999999999999999999999888887 78999999999999999999999999 779999987
Q ss_pred cccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 020954 139 AKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNN 218 (319)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (319)
|-............. +. ...|....
T Consensus 366 A~~g~~~~~~~~~~~--~~--------------------------------~~~~i~~~--------------------- 390 (500)
T KOG0120|consen 366 AIVGASNANVNFNIS--QS--------------------------------QVPGIPLL--------------------- 390 (500)
T ss_pred hhccchhccccCCcc--cc--------------------------------ccccchhh---------------------
Confidence 753221111100000 00 00000000
Q ss_pred CCCCCCCCCCCCcCEEEEcCCCC--C-CCH-------HHHHHHhhcCCCceEEEEeec-------CCCCEEEEEecChHH
Q 020954 219 SSAPSGPKNVTPCATLFVANLGP--T-CTE-------QELTQVFSKCPGFLKLKIQST-------YGPPVAFVDFQDTVS 281 (319)
Q Consensus 219 ~~~~~~~~~~~~~~~l~V~nLp~--~-~t~-------~~L~~~F~~fG~i~~v~i~~~-------~~~~~aFV~F~~~~~ 281 (319)
..+....++.+|.+.|+=. + ..+ |+++.-|++||.|.+|.+... .+.|..||+|.+.++
T Consensus 391 ----~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed 466 (500)
T KOG0120|consen 391 ----MTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTED 466 (500)
T ss_pred ----hcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHH
Confidence 0001112355666666511 1 111 455567889999999998763 245589999999999
Q ss_pred HHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 282 STAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 282 A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
+++|+++|+|..|.++ .+..+|-.
T Consensus 467 ~qrA~~~L~GrKF~nR----tVvtsYyd 490 (500)
T KOG0120|consen 467 SQRAMEELTGRKFANR----TVVASYYD 490 (500)
T ss_pred HHHHHHHccCceeCCc----EEEEEecC
Confidence 9999999999999966 57777643
No 62
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.55 E-value=1e-13 Score=121.27 Aligned_cols=166 Identities=25% Similarity=0.341 Sum_probs=116.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.++|||+||+.++++++|+++|..||.|..+.+..+ +++++|||||+|.+.++|..|+..++ .|+.|+|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 599999999999999999999999999999999887 69999999999999999999999999 999999998763
Q ss_pred --CCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 020954 142 --NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNS 219 (319)
Q Consensus 142 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (319)
............ ....+.
T Consensus 195 ~~~~~~~~~~~~~~--~~~~~~---------------------------------------------------------- 214 (306)
T COG0724 195 ASQPRSELSNNLDA--SFAKKL---------------------------------------------------------- 214 (306)
T ss_pred ccccccccccccch--hhhccc----------------------------------------------------------
Confidence 110000000000 000000
Q ss_pred CCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCC----EEEEEecChHHHHHHHHHhCCCcc
Q 020954 220 SAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPP----VAFVDFQDTVSSTAALNNLQGTIL 294 (319)
Q Consensus 220 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~----~aFV~F~~~~~A~~Al~~lnG~~i 294 (319)
.............+++.|++..++..++...|..+|.+..+.+....... +.++.+.....+..++...+....
T Consensus 215 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (306)
T COG0724 215 -SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKI 292 (306)
T ss_pred -cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceee
Confidence 00000111236689999999999999999999999999877776533222 333444444445444444333333
No 63
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.4e-14 Score=106.33 Aligned_cols=74 Identities=18% Similarity=0.274 Sum_probs=68.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
...|||||||++.++|++|++||+++|.|..|.+-.| +...-|||||+|.+.++|+.|+..++ ..+.|+|+|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 3589999999999999999999999999999988776 77789999999999999999999999 89999998853
No 64
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=5e-14 Score=119.40 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=74.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
..+.-++|+|+|||+...|-||+.+|.+||.|.+|.|+.+...+|||+||+|++.+||++|.++|| .||.|.|+.|
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 344558999999999999999999999999999999999988899999999999999999999999 9999999998
Q ss_pred ccCCc
Q 020954 140 KSNSR 144 (319)
Q Consensus 140 ~~~~~ 144 (319)
...-.
T Consensus 172 TarV~ 176 (376)
T KOG0125|consen 172 TARVH 176 (376)
T ss_pred chhhc
Confidence 65433
No 65
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.55 E-value=3.5e-12 Score=109.99 Aligned_cols=196 Identities=18% Similarity=0.173 Sum_probs=136.7
Q ss_pred CCCcceEEEeCCCCC-CCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
..+...+.|.+|... ++-+.|.++|..||.|+.|++++. ..|-|.|++.|..+.++|+..|| .|..|.|.++
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT---k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT---KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec---ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 344478899999876 888899999999999999999864 25679999999999999999999 8999999888
Q ss_pred ccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 020954 140 KSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIG-SVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNN 218 (319)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (319)
+.+....- ....- ..|.. +-.+....+..+...+
T Consensus 361 kQ~~v~~~-~pflL-------------------pDgSpSfKdys~SkNnRFssp~------------------------- 395 (494)
T KOG1456|consen 361 KQNFVSPV-QPFLL-------------------PDGSPSFKDYSGSKNNRFSSPE------------------------- 395 (494)
T ss_pred cccccccC-Cceec-------------------CCCCcchhhcccccccccCChh-------------------------
Confidence 76443211 00000 00000 0000000000000000
Q ss_pred CCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCC-ceEEEEeecCCC--CEEEEEecChHHHHHHHHHhCCCccc
Q 020954 219 SSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPG-FLKLKIQSTYGP--PVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 219 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~-i~~v~i~~~~~~--~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
...-....+++++|+.-|.|..+||+.|..+|..-+. -.+|+++..++. --+.++|++.++|..||..||...|.
T Consensus 396 --qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 396 --QASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred --HhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhcccccc
Confidence 0000122346889999999999999999999988763 466777753332 38999999999999999999999998
Q ss_pred CCCCCC---eEEEEecCCC
Q 020954 296 SSPTSD---GIRLEFAKSR 311 (319)
Q Consensus 296 ~~~~G~---~i~V~~ak~~ 311 (319)
+.. |. .|++.|+.++
T Consensus 474 ~p~-gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 474 GPN-GSFPFILKLCFSTSK 491 (494)
T ss_pred CCC-CCCCeeeeeeecccc
Confidence 775 43 4788887765
No 66
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=4.4e-14 Score=99.89 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=67.5
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee-cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS-TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~-~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
++.|||+|||+++|.|+..++|.+||.|..|+|-. ...+|-|||.|+++.+|.+|++.|+|+.+.++ -|.|-|-.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r----yl~vlyyq 93 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNR----YLVVLYYQ 93 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCc----eEEEEecC
Confidence 77899999999999999999999999999999965 34567999999999999999999999999955 58887754
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=3.5e-14 Score=97.75 Aligned_cols=64 Identities=27% Similarity=0.451 Sum_probs=56.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC---CCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 234 LFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG---PPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 234 l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~---~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
|||+|||.++++++|+++|+.||.|..+++..++. +++|||+|.+.++|.+|++.++|..|+++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 79999999999999999999999999999998543 45999999999999999999999999943
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=7.5e-14 Score=117.28 Aligned_cols=72 Identities=25% Similarity=0.331 Sum_probs=65.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.++|||+||++++++++|+++|+.||.|++|.|..+.. .+|||||+|.+.++|+.||. |+ .|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 48999999999999999999999999999999987643 57999999999999999995 66 999999998764
No 69
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=1.2e-13 Score=114.13 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=66.8
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC-CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG-PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~-~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
...+|||+||++.+|+++|+++|+.||.|.+|+|..+.. ++||||+|.+.++|..|+. |||..|.+. .|.|.-.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~----~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQ----RVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCc----eEEEEeC
Confidence 367999999999999999999999999999999998643 3599999999999999995 999999955 6998864
Q ss_pred C
Q 020954 309 K 309 (319)
Q Consensus 309 k 309 (319)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 70
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.49 E-value=1e-13 Score=90.86 Aligned_cols=56 Identities=27% Similarity=0.424 Sum_probs=50.5
Q ss_pred HHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 248 LTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 248 L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
|+++|++||.|.++.+..+. +++|||+|.+.++|.+|++.|||..+. |++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~----g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFN----GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEET----TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 78999999999999998754 579999999999999999999999998 557999996
No 71
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=8.2e-14 Score=108.07 Aligned_cols=76 Identities=25% Similarity=0.403 Sum_probs=68.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.-.+.||||||+.++++.||..+|..||.|.+|+|-. ...|||||+|++..+|+.|+..|+ +|..|+|+++.-
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr---nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR---NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee---cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3458999999999999999999999999999999975 457999999999999999999999 899999999876
Q ss_pred CCc
Q 020954 142 NSR 144 (319)
Q Consensus 142 ~~~ 144 (319)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 443
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.5e-13 Score=94.49 Aligned_cols=65 Identities=29% Similarity=0.493 Sum_probs=57.3
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEE
Q 020954 71 LFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (319)
Q Consensus 71 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~ 135 (319)
|||+|||.++++++|+++|+.||.|..+.+..+ .+..+|+|||+|.+.++|++|++.++ .|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999886 57789999999999999999999988 666653
No 73
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=2.3e-13 Score=93.43 Aligned_cols=70 Identities=37% Similarity=0.544 Sum_probs=62.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC--CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~--~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
+|||+|||..+++++|+++|++||.|..+.+..+. ..++|||+|.+.++|.+|++.|+|..+. |+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~----~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG----GRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC----CEEEeeC
Confidence 48999999999999999999999999999988744 3569999999999999999999999998 4468763
No 74
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=1.5e-13 Score=122.27 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=70.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCH--HHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQ--QSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~--~~A~~A~~~l~----~g~~l~v~~ 138 (319)
.....+||||||.+++++++|..+|..||.|..|.|++.+| +|||||+|.+. .++.+||..|| .|+.|+|+.
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34458999999999999999999999999999999998787 99999999987 78999999999 999999999
Q ss_pred cccCCc
Q 020954 139 AKSNSR 144 (319)
Q Consensus 139 a~~~~~ 144 (319)
|+....
T Consensus 85 AKP~YL 90 (759)
T PLN03213 85 AKEHYL 90 (759)
T ss_pred ccHHHH
Confidence 976543
No 75
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.8e-14 Score=113.07 Aligned_cols=84 Identities=24% Similarity=0.348 Sum_probs=75.9
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee----cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~----~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..++|||++|..++||.-|...|-+||.|++|++.- .+.++||||+|+-.|+|..||+.||+.++. ||.|+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~----GrtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF----GRTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc----ceeEEE
Confidence 478999999999999999999999999999999875 456779999999999999999999999999 567999
Q ss_pred EecCCCCCCCCC
Q 020954 306 EFAKSRMGMPRK 317 (319)
Q Consensus 306 ~~ak~~~~~~~~ 317 (319)
.||+....|.+.
T Consensus 85 N~AkP~kikegs 96 (298)
T KOG0111|consen 85 NLAKPEKIKEGS 96 (298)
T ss_pred eecCCccccCCC
Confidence 999988766544
No 76
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.3e-13 Score=102.24 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=71.8
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.....|||.++...+||++|.+.|+.||+|+.|.+..+.+ +|||+|+|++.++|++|+++|||..|. |..|.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll----~q~v~ 145 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL----GQNVS 145 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh----CCcee
Confidence 3578999999999999999999999999999999977655 459999999999999999999999999 55799
Q ss_pred EEecCCCCC
Q 020954 305 LEFAKSRMG 313 (319)
Q Consensus 305 V~~ak~~~~ 313 (319)
|+|+-.+..
T Consensus 146 VDw~Fv~gp 154 (170)
T KOG0130|consen 146 VDWCFVKGP 154 (170)
T ss_pred EEEEEecCC
Confidence 998765433
No 77
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=9.9e-14 Score=108.42 Aligned_cols=77 Identities=26% Similarity=0.488 Sum_probs=69.9
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC-CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG-PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~-~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
+++|||+|||.++.+.||.++|.+||.|..|.|....+ .+||||+|++..+|+.||..-||+.+++. .|+|+|++
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~----rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGC----RLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcc----eEEEEecc
Confidence 77999999999999999999999999999999876444 44999999999999999999999999966 59999987
Q ss_pred CC
Q 020954 310 SR 311 (319)
Q Consensus 310 ~~ 311 (319)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 54
No 78
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.45 E-value=1.5e-13 Score=109.30 Aligned_cols=79 Identities=23% Similarity=0.409 Sum_probs=73.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEE
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (319)
+.+...+|-|-||.+.++.++|+.+|++||.|-+|.|.+| ++.++|||||.|.+..+|+.|++.|+ .|+.|+|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3566799999999999999999999999999999999999 89999999999999999999999999 99999999
Q ss_pred EcccC
Q 020954 138 LAKSN 142 (319)
Q Consensus 138 ~a~~~ 142 (319)
+|+-.
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 98543
No 79
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=4.2e-13 Score=112.47 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=73.7
Q ss_pred CCCCCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEE
Q 020954 61 AYGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTL 134 (319)
Q Consensus 61 p~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l 134 (319)
|....++-+||||+-|+++++|++|+..|+.||.|+.|.|+.+ +|+++|||||+|.+..+...|.+..+ .|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 3355688899999999999999999999999999999999998 99999999999999999999998877 89999
Q ss_pred EEEEcc
Q 020954 135 YIDLAK 140 (319)
Q Consensus 135 ~v~~a~ 140 (319)
.|++-.
T Consensus 174 ~VDvER 179 (335)
T KOG0113|consen 174 LVDVER 179 (335)
T ss_pred EEEecc
Confidence 998864
No 80
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.44 E-value=4.1e-13 Score=108.91 Aligned_cols=80 Identities=33% Similarity=0.493 Sum_probs=72.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHH----HhhcCCCceEEEEee-cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 230 PCATLFVANLGPTCTEQELTQ----VFSKCPGFLKLKIQS-TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~----~F~~fG~i~~v~i~~-~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
++.||||.||++.+..++|+. +|++||.|.+|...+ .+-+|.|||.|.+.+.|..|+.+|+|+.+. |+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy----gK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY----GKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc----Cchhh
Confidence 455999999999999999998 999999999999875 455679999999999999999999999999 55799
Q ss_pred EEecCCCCC
Q 020954 305 LEFAKSRMG 313 (319)
Q Consensus 305 V~~ak~~~~ 313 (319)
|.||++++.
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999998854
No 81
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=7.6e-13 Score=93.65 Aligned_cols=76 Identities=21% Similarity=0.367 Sum_probs=67.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
+.++-|||.|||+++|.++..++|.+||.|..|+|-.+ ...+|-|||.|++..+|++|++.|+ .++.|.|-|...
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~-k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT-KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc-cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 45699999999999999999999999999999988653 3457889999999999999999999 999999988754
Q ss_pred C
Q 020954 142 N 142 (319)
Q Consensus 142 ~ 142 (319)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 82
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=4.4e-13 Score=121.77 Aligned_cols=76 Identities=24% Similarity=0.401 Sum_probs=72.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
++|||||||++++|++|..+|+..|.|.++++..| +|+.+||||++|.+.++|+.|++.|| .|+.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999998 99999999999999999999999999 9999999998754
Q ss_pred Cc
Q 020954 143 SR 144 (319)
Q Consensus 143 ~~ 144 (319)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 33
No 83
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.43 E-value=2.6e-13 Score=107.89 Aligned_cols=76 Identities=26% Similarity=0.387 Sum_probs=69.1
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.-.+|.|-||-+-+|.++|+.+|++||.|-+|.|..+. .+|||||.|.+..+|+.|+++|+|.+|+++ .|+|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR----elrV 87 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR----ELRV 87 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc----eeee
Confidence 35689999999999999999999999999999998643 567999999999999999999999999955 5999
Q ss_pred EecC
Q 020954 306 EFAK 309 (319)
Q Consensus 306 ~~ak 309 (319)
++|+
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 9886
No 84
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.9e-13 Score=109.72 Aligned_cols=78 Identities=27% Similarity=0.489 Sum_probs=73.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
...||||||+|-.+|+|.-|...|-.||.|..|++..| +++.+|||||+|...++|..||..|| .||.|+|++|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34599999999999999999999999999999999988 89999999999999999999999999 9999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 7643
No 85
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=1.9e-12 Score=89.33 Aligned_cols=71 Identities=38% Similarity=0.564 Sum_probs=64.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC---CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG---PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~---~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
+|+|+|||..+++++|+++|+.||.|..+.+..+.. .++|||+|.+.++|..|++.++|..+. |+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~----~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG----GRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEeC
Confidence 489999999999999999999999999999987542 679999999999999999999999998 44698875
No 86
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.2e-12 Score=89.50 Aligned_cols=67 Identities=30% Similarity=0.463 Sum_probs=60.0
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 236 VANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 236 V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
|+|||..+++++|+++|++||.|..+.+..+.. +++|||+|.+.++|.+|++.|+|..+. |+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~----~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD----GRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC----CcEEEeC
Confidence 679999999999999999999999999987543 569999999999999999999999998 4468773
No 87
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=3.1e-14 Score=110.97 Aligned_cols=75 Identities=27% Similarity=0.467 Sum_probs=70.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
...-|||||||++.||.||.-+|++||+|..|.|++| +|+++||||+.|+|..+.-.|+..|| .||.|+|+...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 3578999999999999999999999999999999998 99999999999999999999999999 99999998754
Q ss_pred c
Q 020954 141 S 141 (319)
Q Consensus 141 ~ 141 (319)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 3
No 88
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.40 E-value=4e-13 Score=112.20 Aligned_cols=74 Identities=32% Similarity=0.464 Sum_probs=68.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecCCCC
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKSRM 312 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~~~ 312 (319)
.|||+|||.++++.+|+.+|++||+|++|.|+++ ||||+.++...|..||..|||+.|. |..|.|+-+|+++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLh----g~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLH----GVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceec----ceEEEEEeccccC
Confidence 6999999999999999999999999999999963 9999999999999999999999999 5579999999984
Q ss_pred CC
Q 020954 313 GM 314 (319)
Q Consensus 313 ~~ 314 (319)
.-
T Consensus 76 k~ 77 (346)
T KOG0109|consen 76 KA 77 (346)
T ss_pred CC
Confidence 43
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2.3e-12 Score=88.34 Aligned_cols=67 Identities=39% Similarity=0.580 Sum_probs=60.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEE
Q 020954 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (319)
Q Consensus 70 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v 136 (319)
+|||+|||.++++++|+++|+.||.|..+.+..+.+.++|+|||+|.+.++|++|+..++ .|+.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 589999999999999999999999999999887767788999999999999999999888 5666655
No 90
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3.3e-12 Score=107.15 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=74.1
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+-+||||.-|+.+++|++|+..|+.||.|+.|+|+.+ +.+|||||+|++..+...|.+..+|..|+++ .|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr----ri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR----RIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc----EEE
Confidence 46789999999999999999999999999999999874 5677999999999999999999999999955 599
Q ss_pred EEecCCCCCC
Q 020954 305 LEFAKSRMGM 314 (319)
Q Consensus 305 V~~ak~~~~~ 314 (319)
|++-+-+..|
T Consensus 175 VDvERgRTvk 184 (335)
T KOG0113|consen 175 VDVERGRTVK 184 (335)
T ss_pred EEeccccccc
Confidence 9998876554
No 91
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=6e-14 Score=109.35 Aligned_cols=77 Identities=22% Similarity=0.372 Sum_probs=69.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.+.-|||+|||++.||.||.-+|++||+|+.|.+++++ ++||||+.|+|..+...|+..|||..|. ||.|+|
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~----gRtirV 109 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL----GRTIRV 109 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec----ceeEEe
Confidence 36689999999999999999999999999999999855 4569999999999999999999999999 557999
Q ss_pred EecCC
Q 020954 306 EFAKS 310 (319)
Q Consensus 306 ~~ak~ 310 (319)
+.--+
T Consensus 110 DHv~~ 114 (219)
T KOG0126|consen 110 DHVSN 114 (219)
T ss_pred eeccc
Confidence 86443
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.38 E-value=2.5e-12 Score=106.37 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=63.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..||||+||++.+|+++|+++|+.||.|.+|+|.++ +..++||||+|.+.++|+.|+ .|+ .++.|.|..+.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D-~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS-GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC-CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 489999999999999999999999999999999987 455689999999999999999 566 88888887654
No 93
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=4.5e-12 Score=111.79 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=71.2
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
+..+-|||+.||.++.|++|.-+|++.|.|-+++|+.+ .++|||||+|.+.++|++|++.||+++|.. |+.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~---GK~ig 157 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP---GKLLG 157 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC---CCEeE
Confidence 34789999999999999999999999999999999875 467899999999999999999999999983 77888
Q ss_pred EEecCC
Q 020954 305 LEFAKS 310 (319)
Q Consensus 305 V~~ak~ 310 (319)
|+.+..
T Consensus 158 vc~Sva 163 (506)
T KOG0117|consen 158 VCVSVA 163 (506)
T ss_pred EEEeee
Confidence 886654
No 94
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=2e-12 Score=105.19 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=56.7
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
.-+.|||+||++.++.++|++.|++||+|+++.++.| +++|||||+|.|.++|.+|++.-| -.|+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piId 79 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIID 79 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccc
Confidence 3578999999999999999999999999999999875 457799999999999999998544 3445
No 95
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.33 E-value=2.6e-12 Score=100.42 Aligned_cols=75 Identities=27% Similarity=0.357 Sum_probs=68.6
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
..+|||+||+..++++.|+++|-+.|.|+++++.++ ...|||||+|.++++|+-|++.||...+. ||+|+|.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY----grpIrv~ 84 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY----GRPIRVN 84 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc----CceeEEE
Confidence 568999999999999999999999999999999763 45679999999999999999999999999 6689998
Q ss_pred ecC
Q 020954 307 FAK 309 (319)
Q Consensus 307 ~ak 309 (319)
-+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 776
No 96
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=1.4e-12 Score=123.74 Aligned_cols=170 Identities=21% Similarity=0.368 Sum_probs=133.8
Q ss_pred CCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcCCCcEEEEE
Q 020954 59 FPAYGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALNKGSTLYID 137 (319)
Q Consensus 59 ~pp~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~g~~l~v~ 137 (319)
+.+..+...++|||+|||+..+++.+|+..|..+|.|.+|.|... -+....|+||.|.+...+-.|+..+. +..|.-.
T Consensus 363 v~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s-~~~I~~g 441 (975)
T KOG0112|consen 363 VLKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEES-GPLIGNG 441 (975)
T ss_pred cccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhc-CCccccC
Confidence 344567777899999999999999999999999999999999876 55566789999999988888876654 2111100
Q ss_pred EcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccC
Q 020954 138 LAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFN 217 (319)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 217 (319)
-. +. ++| .
T Consensus 442 ~~-------r~--------------------------glG----------------~----------------------- 449 (975)
T KOG0112|consen 442 TH-------RI--------------------------GLG----------------Q----------------------- 449 (975)
T ss_pred cc-------cc--------------------------ccc----------------c-----------------------
Confidence 00 00 000 0
Q ss_pred CCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 218 NSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
.....++.+||++|...+....|...|..||.|..|.+.. +..||+|.|++...|+.|+..|-|..|++-
T Consensus 450 --------~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P 519 (975)
T KOG0112|consen 450 --------PKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGP 519 (975)
T ss_pred --------cccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCC
Confidence 0012367899999999999999999999999999988764 455999999999999999999999999987
Q ss_pred CCCCeEEEEecCCCCC
Q 020954 298 PTSDGIRLEFAKSRMG 313 (319)
Q Consensus 298 ~~G~~i~V~~ak~~~~ 313 (319)
. +.|+|+|+...-.
T Consensus 520 ~--~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 520 P--RRLRVDLASPPGA 533 (975)
T ss_pred C--cccccccccCCCC
Confidence 4 6799999987643
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=4.1e-12 Score=94.30 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=69.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.=-|||.++...++|++|.+.|..||+|.++.|..| +|-.+|||+|+|.+.++|++|+..+| .|..|.|+|+..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 356899999999999999999999999999998887 89999999999999999999999999 999999999864
Q ss_pred C
Q 020954 142 N 142 (319)
Q Consensus 142 ~ 142 (319)
+
T Consensus 152 ~ 152 (170)
T KOG0130|consen 152 K 152 (170)
T ss_pred c
Confidence 3
No 98
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3.6e-11 Score=108.22 Aligned_cols=160 Identities=23% Similarity=0.370 Sum_probs=109.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEe--cC---CCCCcc---EEEEEEcCHHHHHHHHHHcC-CCcEEEEEE
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLR--SS---TQNSQP---FAFAVFSDQQSALGAMYALN-KGSTLYIDL 138 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~--~~---~~~~~g---~afV~f~~~~~A~~A~~~l~-~g~~l~v~~ 138 (319)
.+.||||+||.+++|++|...|..||.+. |... .. .-..+| |+|+.|+++.+++.-+.... .+..+.+..
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKV 337 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEE
Confidence 58899999999999999999999999852 2221 11 123455 99999999999998887776 444444444
Q ss_pred cccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 020954 139 AKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNN 218 (319)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (319)
.......+ ..+...|.... . .++.
T Consensus 338 ss~~~k~k-~VQIrPW~laD------s-----------~fv~-------------------------------------- 361 (520)
T KOG0129|consen 338 SSPTIKDK-EVQIRPWVLAD------S-----------DFVL-------------------------------------- 361 (520)
T ss_pred ecCccccc-ceeEEeeEecc------c-----------hhhh--------------------------------------
Confidence 33211110 00000000000 0 0000
Q ss_pred CCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhh-cCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHH
Q 020954 219 SSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFS-KCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNN 288 (319)
Q Consensus 219 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~ 288 (319)
.......+.+||||++||.-++-++|..+|+ .||.|..+-|.+| .-+|-|-|+|.+..+=.+||.+
T Consensus 362 ----d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 362 ----DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ----ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 0001224588999999999999999999999 8999999999876 2466899999999999999873
No 99
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.31 E-value=4.2e-12 Score=115.40 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=72.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
+.|||+|||+++++++|.++|+..|.|.+++++.|. .+||||++|.+.++|.+|++.|||.++. ||+|+|.|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~----gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN----GRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC----CceEEeec
Confidence 789999999999999999999999999999998643 4569999999999999999999999999 56799999
Q ss_pred cCCCCCC
Q 020954 308 AKSRMGM 314 (319)
Q Consensus 308 ak~~~~~ 314 (319)
+.+...+
T Consensus 95 ~~~~~~~ 101 (435)
T KOG0108|consen 95 ASNRKNA 101 (435)
T ss_pred ccccchh
Confidence 9887543
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.29 E-value=1.5e-11 Score=107.51 Aligned_cols=75 Identities=29% Similarity=0.434 Sum_probs=68.8
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
.++|||+||+.++|+++|+++|..||.|..|.+..+ ..++||||+|.+.++|..|++.|+|..|. |+.|+|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~----~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE----GRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC----CceeEee
Confidence 589999999999999999999999999999998764 45669999999999999999999999999 5579999
Q ss_pred ecC
Q 020954 307 FAK 309 (319)
Q Consensus 307 ~ak 309 (319)
++.
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 965
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=2.8e-11 Score=83.33 Aligned_cols=69 Identities=38% Similarity=0.596 Sum_probs=61.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 70 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
+|+|+|||.++++++|+++|+.||.|..+.+..+ .+..+|+|||+|.+.++|..|++.++ .|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999998876 44678999999999999999999998 677777753
No 102
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=1.8e-11 Score=83.50 Aligned_cols=64 Identities=39% Similarity=0.553 Sum_probs=58.0
Q ss_pred EeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEE
Q 020954 73 VAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (319)
Q Consensus 73 V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v 136 (319)
|+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|.+|+..++ .|+.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999998876 57889999999999999999999988 6777665
No 103
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.27 E-value=2.6e-11 Score=97.74 Aligned_cols=83 Identities=28% Similarity=0.434 Sum_probs=73.0
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee-cCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS-TYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~-~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
..+||||.+||.++.-.||..+|..|-..+...+.. +++ +.+|||+|.+..+|..|+++|||..|+-.+ |..|+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~-~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET-GSTLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecccc-CceeE
Confidence 368999999999999999999999999888877754 222 259999999999999999999999998877 99999
Q ss_pred EEecCCCCC
Q 020954 305 LEFAKSRMG 313 (319)
Q Consensus 305 V~~ak~~~~ 313 (319)
|++||+-..
T Consensus 112 iElAKSNtK 120 (284)
T KOG1457|consen 112 IELAKSNTK 120 (284)
T ss_pred eeehhcCcc
Confidence 999998643
No 104
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1e-11 Score=106.39 Aligned_cols=83 Identities=22% Similarity=0.395 Sum_probs=76.3
Q ss_pred CCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCC----EEEEEecChHHHHHHHHHhCCCcccCCCCCCe
Q 020954 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPP----VAFVDFQDTVSSTAALNNLQGTILYSSPTSDG 302 (319)
Q Consensus 227 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~----~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~ 302 (319)
..+|.++|||.-|.+-+|+++|.-+|+.||.|.+|.++.+...| ||||+|++.+++++|.=.|++..|.+++
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrR---- 310 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR---- 310 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccce----
Confidence 34678899999999999999999999999999999999987766 9999999999999999999999999886
Q ss_pred EEEEecCCCCC
Q 020954 303 IRLEFAKSRMG 313 (319)
Q Consensus 303 i~V~~ak~~~~ 313 (319)
|+|.|+.+-+.
T Consensus 311 IHVDFSQSVsk 321 (479)
T KOG0415|consen 311 IHVDFSQSVSK 321 (479)
T ss_pred EEeehhhhhhh
Confidence 99999987543
No 105
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=2.8e-12 Score=102.99 Aligned_cols=134 Identities=25% Similarity=0.269 Sum_probs=109.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.+..+||||+||...|+|+-|.++|-+.|.|..|.|..+ .++.+ ||||.|.++.+..-|++.+| .++.+.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~--- 81 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR--- 81 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc---
Confidence 344599999999999999999999999999999999887 55555 99999999999999999988 3333333
Q ss_pred ccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 020954 140 KSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNS 219 (319)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (319)
T Consensus 82 -------------------------------------------------------------------------------- 81 (267)
T KOG4454|consen 82 -------------------------------------------------------------------------------- 81 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcCEEEEcC----CCCCCCHHHHHHHhhcCCCceEEEEeec---CCCCEEEEEecChHHHHHHHHHhCCC
Q 020954 220 SAPSGPKNVTPCATLFVAN----LGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQDTVSSTAALNNLQGT 292 (319)
Q Consensus 220 ~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~F~~fG~i~~v~i~~~---~~~~~aFV~F~~~~~A~~Al~~lnG~ 292 (319)
+++.+| |...++++.+.+.|+.-|.+..+++..+ .++.++||.+.-..+.-.|+...++.
T Consensus 82 -------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 82 -------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred -------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 344445 6777899999999999999999998763 34559999998887777888877776
Q ss_pred ccc
Q 020954 293 ILY 295 (319)
Q Consensus 293 ~i~ 295 (319)
...
T Consensus 149 ~~~ 151 (267)
T KOG4454|consen 149 ELF 151 (267)
T ss_pred CcC
Confidence 554
No 106
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.22 E-value=2.6e-11 Score=113.54 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=72.5
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
-++||||++|+.+++|.||.++|+.||+|.+|.++. .++||||.+....+|.+|+.+|+...+.++ .|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k----~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADK----TIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccce----eeEEeeec
Confidence 478999999999999999999999999999999985 567999999999999999999999999955 59999999
Q ss_pred CCCCC
Q 020954 310 SRMGM 314 (319)
Q Consensus 310 ~~~~~ 314 (319)
.+--|
T Consensus 494 g~G~k 498 (894)
T KOG0132|consen 494 GKGPK 498 (894)
T ss_pred cCCcc
Confidence 87544
No 107
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.21 E-value=7.5e-11 Score=77.18 Aligned_cols=52 Identities=29% Similarity=0.484 Sum_probs=46.7
Q ss_pred HHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 85 IYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 85 L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
|+++|++||.|..+.+..+. +++|||+|.+.++|++|++.|| .|+.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997644 6899999999999999999999 9999999986
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=99.19 E-value=5.9e-11 Score=81.41 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=48.6
Q ss_pred HHHHHHHhh----cCCCceEEE-Eee------cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 245 EQELTQVFS----KCPGFLKLK-IQS------TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 245 ~~~L~~~F~----~fG~i~~v~-i~~------~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
+++|+++|+ .||.|.+|. +.. ...+|||||+|.+.++|.+|++.|||+.+. |+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~----gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD----GRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEeC
Confidence 678888888 999999995 432 234679999999999999999999999999 5568763
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.4e-10 Score=106.28 Aligned_cols=178 Identities=18% Similarity=0.193 Sum_probs=124.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcC-----------CC-ccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC---
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREF-----------PG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--- 129 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~-----------G~-v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~--- 129 (319)
....+.+||++++..++++.+..+|..- |. |..+.+ ...+.|||++|.+.++|..|+...-
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~----n~~~nfa~ie~~s~~~at~~~~~~~~~f 247 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL----NLEKNFAFIEFRSISEATEAMALDGIIF 247 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee----cccccceeEEecCCCchhhhhcccchhh
Confidence 3445899999999999999999988863 33 555555 4557789999999999999985444
Q ss_pred CCcEEEEEEcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020954 130 KGSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGS 209 (319)
Q Consensus 130 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 209 (319)
.|..+++.--...... .........
T Consensus 248 ~g~~~~~~r~~d~~~~---------------------------p~~~~~~~~---------------------------- 272 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPV---------------------------PGITLSPSQ---------------------------- 272 (500)
T ss_pred CCCCceecccccccCC---------------------------ccchhhhcc----------------------------
Confidence 6677666211100000 000000000
Q ss_pred cccccccCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHH
Q 020954 210 LITTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAA 285 (319)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~A 285 (319)
.................+.+||+|||..+++++++++...||.+...+++.+ .+++|||.+|.+..-...|
T Consensus 273 -----~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A 347 (500)
T KOG0120|consen 273 -----LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQA 347 (500)
T ss_pred -----ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhh
Confidence 0000000001111123567999999999999999999999999999988863 4577999999999999999
Q ss_pred HHHhCCCcccCCCCCCeEEEEecCC
Q 020954 286 LNNLQGTILYSSPTSDGIRLEFAKS 310 (319)
Q Consensus 286 l~~lnG~~i~~~~~G~~i~V~~ak~ 310 (319)
+..|||..++++ .|.|..|-.
T Consensus 348 ~agLnGm~lgd~----~lvvq~A~~ 368 (500)
T KOG0120|consen 348 IAGLNGMQLGDK----KLVVQRAIV 368 (500)
T ss_pred hcccchhhhcCc----eeEeehhhc
Confidence 999999999955 699887654
No 110
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=1.2e-10 Score=105.90 Aligned_cols=174 Identities=24% Similarity=0.261 Sum_probs=110.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
.-..++|+|-|||..|++++|+++|+.||+|.+|+. +-..+|.+||+|.|..+|+.|+++|+ .|+.|+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~---t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~---- 144 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE---TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR---- 144 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc---ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC----
Confidence 345699999999999999999999999999998655 34457889999999999999999999 6665551
Q ss_pred cCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 020954 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (319)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
..... +... ...+ ...+...+.+..
T Consensus 145 -------~~~~~-------~~~~--------~~~~----------~~~~~~~~~p~a----------------------- 169 (549)
T KOG4660|consen 145 -------PGGAR-------RAMG--------LQSG----------TSFLNHFGSPLA----------------------- 169 (549)
T ss_pred -------CCccc-------ccch--------hccc----------chhhhhccchhh-----------------------
Confidence 00000 0000 0000 000111110000
Q ss_pred CCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCC
Q 020954 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTS 300 (319)
Q Consensus 221 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G 300 (319)
...+...+ -..+|+- |.+..+..-++.+|+.+|.+.. +...-.+ ..-|++|.+..++..+...+ |+.+.+.
T Consensus 170 -~s~pgg~~-~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-hq~~~~~~~~~s~a~~~~~~-G~~~s~~--- 240 (549)
T KOG4660|consen 170 -NSPPGGWP-RGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLN-HQRFVEFADNRSYAFSEPRG-GFLISNS--- 240 (549)
T ss_pred -cCCCCCCc-CCcceee-eccchhhhhhhcchhccCcccc-ccccchh-hhhhhhhccccchhhcccCC-ceecCCC---
Confidence 00001111 1234433 8888888888888999998877 5443111 26889999999997777744 7777755
Q ss_pred CeEEEEecCC
Q 020954 301 DGIRLEFAKS 310 (319)
Q Consensus 301 ~~i~V~~ak~ 310 (319)
...++|+..
T Consensus 241 -~~v~t~S~~ 249 (549)
T KOG4660|consen 241 -SGVITFSGP 249 (549)
T ss_pred -CceEEecCC
Confidence 366666654
No 111
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=3.7e-10 Score=96.93 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=70.7
Q ss_pred CCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHh-CCCcccCCCCCC
Q 020954 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNL-QGTILYSSPTSD 301 (319)
Q Consensus 223 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~l-nG~~i~~~~~G~ 301 (319)
..+..+...++|||+||-..++|.+|+++|.+||+|.+|.+.. ++++|||+|.+.++|+.|.+.+ |...|. |+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~----G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVIN----GF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeec----ce
Confidence 4455666788999999999999999999999999999999996 4459999999999999888765 555666 55
Q ss_pred eEEEEecCCC
Q 020954 302 GIRLEFAKSR 311 (319)
Q Consensus 302 ~i~V~~ak~~ 311 (319)
.|+|.|++.+
T Consensus 294 Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 294 RLKIKWGRPK 303 (377)
T ss_pred EEEEEeCCCc
Confidence 6999999983
No 112
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.08 E-value=1.1e-09 Score=90.33 Aligned_cols=72 Identities=26% Similarity=0.450 Sum_probs=63.9
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
...||.+.|..+++++.|...|.+|-.+...++++++ +++|+||.|.++.++.+|+..|||+.++.+ +|++.
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr----piklR 265 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR----PIKLR 265 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccc----hhHhh
Confidence 5689999999999999999999999998888887644 566999999999999999999999999966 46654
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.07 E-value=3.1e-10 Score=106.48 Aligned_cols=70 Identities=33% Similarity=0.456 Sum_probs=65.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.+|||||+|+.+++|.||.++|+.||+|.+|.++. ++|||||.+...++|.+|+..|+ .++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 58999999999999999999999999999999863 68899999999999999999998 899999999854
No 114
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.06 E-value=6.2e-10 Score=96.61 Aligned_cols=183 Identities=16% Similarity=0.182 Sum_probs=112.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhc---C-CCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC--CCcEEEEEEccc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFRE---F-PGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDLAKS 141 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~---~-G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~--~g~~l~v~~a~~ 141 (319)
--|-+++||+++++.|+.++|.. . |.++.|.++.. +|+-.|-|||.|..+++|+.||.... .|+. +|+..++
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqR-YIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQR-YIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHH-HHHHHHH
Confidence 45678899999999999999963 1 24556655554 89999999999999999999997665 3332 2332222
Q ss_pred CCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 020954 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (319)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
....-.. ..++.. .... ..+.++. ...+. +.
T Consensus 241 TaaEvqq--------vlnr~~-s~pL-----i~~~~sp----------~~p~~-------------------------p~ 271 (508)
T KOG1365|consen 241 TAAEVQQ--------VLNREV-SEPL-----IPGLTSP----------LLPGG-------------------------PA 271 (508)
T ss_pred hHHHHHH--------HHHhhc-cccc-----cCCCCCC----------CCCCC-------------------------cc
Confidence 1110000 000000 0000 0000000 00000 00
Q ss_pred CCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceE---EEEeec---CCCCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLK---LKIQST---YGPPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 222 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~---v~i~~~---~~~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
...+. .....+|-+++||++.+.++|.++|..|-.-++ |+++.+ +-.|-|||+|.+.++|..|....+.+...
T Consensus 272 ~~~p~-~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk 350 (508)
T KOG1365|consen 272 RLVPP-TRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMK 350 (508)
T ss_pred ccCCC-CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcc
Confidence 01111 112557999999999999999999999874322 555542 22349999999999999999988888876
Q ss_pred CCCCCCeEEEE
Q 020954 296 SSPTSDGIRLE 306 (319)
Q Consensus 296 ~~~~G~~i~V~ 306 (319)
.+ -|.|-
T Consensus 351 ~R----YiEvf 357 (508)
T KOG1365|consen 351 SR----YIEVF 357 (508)
T ss_pred cc----eEEEe
Confidence 44 36653
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=3.7e-11 Score=113.81 Aligned_cols=143 Identities=13% Similarity=0.130 Sum_probs=118.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEe--cCCCCCccEEEEEEcCHHHHHHHHHHcCCCcEEEEEEcccCCcc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLR--SSTQNSQPFAFAVFSDQQSALGAMYALNKGSTLYIDLAKSNSRS 145 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~--~~~~~~~g~afV~f~~~~~A~~A~~~l~~g~~l~v~~a~~~~~~ 145 (319)
..++||+||+..+.+.+|...|..+|.++.+++. .+.++.+|+||++|.+.+++.+|+.... +. + +
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~---~-~------- 734 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SC---F-F------- 734 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hh---h-h-------
Confidence 4578999999999999999999999998777665 3488899999999999999999995332 00 0 0
Q ss_pred cCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCC
Q 020954 146 KRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGP 225 (319)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (319)
T Consensus 735 -------------------------------------------------------------------------------- 734 (881)
T KOG0128|consen 735 -------------------------------------------------------------------------------- 734 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee---cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCe
Q 020954 226 KNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS---TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDG 302 (319)
Q Consensus 226 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~---~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~ 302 (319)
....|+|+|+|+..|.++|+.+|+.+|.+++++++. ++-+|.|||.|.+..+|.+++..+++..+..+.
T Consensus 735 ----gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~---- 806 (881)
T KOG0128|consen 735 ----GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENN---- 806 (881)
T ss_pred ----hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcC----
Confidence 023599999999999999999999999999998776 334669999999999999999999988888664
Q ss_pred EEEEecCC
Q 020954 303 IRLEFAKS 310 (319)
Q Consensus 303 i~V~~ak~ 310 (319)
+.|..+..
T Consensus 807 ~~v~vsnp 814 (881)
T KOG0128|consen 807 GEVQVSNP 814 (881)
T ss_pred ccccccCC
Confidence 66666444
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=99.03 E-value=1e-09 Score=75.25 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=47.8
Q ss_pred HHHHHHHhh----cCCCccEEE-EecC--C--CCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEE
Q 020954 82 PREIYNLFR----EFPGYESSH-LRSS--T--QNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (319)
Q Consensus 82 ~~~L~~~F~----~~G~v~~v~-i~~~--~--~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v 136 (319)
+++|+++|+ .||.|.++. +..+ + +.++|||||+|.+.++|.+|+..|| .|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999885 5544 4 8899999999999999999999999 7887765
No 117
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4e-10 Score=96.81 Aligned_cols=77 Identities=22% Similarity=0.361 Sum_probs=71.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.+.|||-.|.+-++++||.-+|+.||.|.+|.++++ +|.+..||||+|.+.+++++|.-.|. .++.|+|.|+.+
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 389999999999999999999999999999999998 89999999999999999999998887 999999999866
Q ss_pred CCc
Q 020954 142 NSR 144 (319)
Q Consensus 142 ~~~ 144 (319)
-+.
T Consensus 319 Vsk 321 (479)
T KOG0415|consen 319 VSK 321 (479)
T ss_pred hhh
Confidence 444
No 118
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.02 E-value=6.8e-10 Score=100.85 Aligned_cols=81 Identities=25% Similarity=0.291 Sum_probs=72.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.+++|||.+|...+.-.+|+.||++||.|+-.+++++.. ++|+||++.+.++|.+||+.|+-++|. |+.|.|
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH----GrmISV 479 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH----GRMISV 479 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc----ceeeee
Confidence 467899999999999999999999999999999998543 349999999999999999999999999 557999
Q ss_pred EecCCCCCC
Q 020954 306 EFAKSRMGM 314 (319)
Q Consensus 306 ~~ak~~~~~ 314 (319)
.-+|+...-
T Consensus 480 EkaKNEp~G 488 (940)
T KOG4661|consen 480 EKAKNEPGG 488 (940)
T ss_pred eecccCccc
Confidence 999886543
No 119
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.01 E-value=2.9e-08 Score=89.24 Aligned_cols=73 Identities=18% Similarity=0.109 Sum_probs=58.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccE-EEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYES-SHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (319)
..-.|-+++||+.+|++||.++|+..-.|.. +.+..+ .++..|-|||.|++.++|++||.... .-+-|.|-.+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 4478889999999999999999998666544 555555 77899999999999999999998776 4555555443
No 120
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=2.7e-10 Score=94.32 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=70.9
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee---cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS---TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~---~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
..+.|||+-|...-.|||++.+|..||.|++|.+.+ ..+||||||.|.+..+|+.||..|+|..-.-.- ...|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA-SSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGA-SSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCC-ccceEEE
Confidence 367899999999999999999999999999999987 446789999999999999999999997543222 3469999
Q ss_pred ecCCCCC
Q 020954 307 FAKSRMG 313 (319)
Q Consensus 307 ~ak~~~~ 313 (319)
|+.....
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9987543
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=1.3e-09 Score=93.53 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=65.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC-----CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----~g~~l~v~~a 139 (319)
+...+||||++|...++|.+|++.|.+||+|+++.+.. .+++|||+|.+.++|+.|.+..- .|+.|.|.|+
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec----ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 55579999999999999999999999999999998864 36699999999999999887654 9999999998
Q ss_pred cc
Q 020954 140 KS 141 (319)
Q Consensus 140 ~~ 141 (319)
+.
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 86
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.95 E-value=2.2e-09 Score=85.98 Aligned_cols=74 Identities=26% Similarity=0.341 Sum_probs=66.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcC-CCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREF-PGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~-G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
--+||+.+|..+.+.+|..+|.+| |.|..+++-++ +|.++|||||+|++.+.|.-|-+.|| .++.|.|.+-..
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 568999999999999999999998 66788888666 99999999999999999999999999 999999988654
Q ss_pred C
Q 020954 142 N 142 (319)
Q Consensus 142 ~ 142 (319)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 3
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.90 E-value=3.1e-09 Score=92.54 Aligned_cols=169 Identities=21% Similarity=0.216 Sum_probs=122.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEec--CCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRS--STQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~--~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
...++|++++..++.+.++..++..+|.+....+.. +...++|++.+.|...+.+..|+.... .+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 458899999999999999999999999865554443 377889999999999999999986544 22222221111
Q ss_pred cCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 020954 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (319)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
... .+... ...
T Consensus 167 ~~~--~~~~n---------~~~---------------------------------------------------------- 177 (285)
T KOG4210|consen 167 RRG--LRPKN---------KLS---------------------------------------------------------- 177 (285)
T ss_pred ccc--ccccc---------hhc----------------------------------------------------------
Confidence 000 00000 000
Q ss_pred CCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccC
Q 020954 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYS 296 (319)
Q Consensus 221 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~ 296 (319)
........+.++|+||++++++++|+..|..+|.|..+++.... .++||+|.|.+...+..|+.. +...+.
T Consensus 178 ---~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~- 252 (285)
T KOG4210|consen 178 ---RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG- 252 (285)
T ss_pred ---ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc-
Confidence 00001123334499999999999999999999999999998743 345999999999999999998 888888
Q ss_pred CCCCCeEEEEecCCCC
Q 020954 297 SPTSDGIRLEFAKSRM 312 (319)
Q Consensus 297 ~~~G~~i~V~~ak~~~ 312 (319)
|+++.|.+.+...
T Consensus 253 ---~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 253 ---GRPLRLEEDEPRP 265 (285)
T ss_pred ---CcccccccCCCCc
Confidence 5579999888663
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.89 E-value=1.2e-07 Score=88.37 Aligned_cols=191 Identities=12% Similarity=0.012 Sum_probs=118.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEcccCC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKSNS 143 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~~~ 143 (319)
..+-+.+++++.++.|++++|... .|.++.|..+ .+...|-++|+|....++++|+..-+ -.|.+.+.-+..
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~-- 388 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGN-- 388 (944)
T ss_pred heeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCc--
Confidence 344567899999999999999752 2555555544 44457889999999999999987555 555555533321
Q ss_pred cccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCC
Q 020954 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (319)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (319)
..|+........... +.+....+.... ..+.+. . ....
T Consensus 389 --------~~~~~a~~~~~~~~~--------~~~~~~hg~p~~-----------------~pr~~~--------~-~gq~ 426 (944)
T KOG4307|consen 389 --------LGRNGAPPFQAGVPP--------PVIQNNHGRPIA-----------------PPRAMV--------R-PGQN 426 (944)
T ss_pred --------cccccCccccccCCC--------CcccccCCCCCC-----------------Cccccc--------C-CCCC
Confidence 111111111000000 000000000000 000000 0 0001
Q ss_pred CCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceE-EEEee---cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLK-LKIQS---TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 224 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~-v~i~~---~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
++.......+|||..||..+++.++.++|+..-.|++ |.|.. +...+.|||.|..++++..|...-+-+.++.+
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r-- 504 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHR-- 504 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCce--
Confidence 2233345779999999999999999999999888887 55543 44556999999999999999988787888766
Q ss_pred CCeEEEEec
Q 020954 300 SDGIRLEFA 308 (319)
Q Consensus 300 G~~i~V~~a 308 (319)
-|+|.-.
T Consensus 505 --~irv~si 511 (944)
T KOG4307|consen 505 --IIRVDSI 511 (944)
T ss_pred --EEEeech
Confidence 4888743
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.84 E-value=1.2e-08 Score=81.78 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=66.0
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcC-CCceEEEEee----cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKC-PGFLKLKIQS----TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~f-G~i~~v~i~~----~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
....++|..+|..+.+.+|...|.+| |.|.++++-+ +++++||||+|++.+.|.-|-+.||++.+. |+.|.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~----e~lL~ 123 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM----EHLLE 123 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh----hheee
Confidence 35579999999999999999999999 6778888744 456779999999999999999999999999 45688
Q ss_pred EEecCC
Q 020954 305 LEFAKS 310 (319)
Q Consensus 305 V~~ak~ 310 (319)
+.|=..
T Consensus 124 c~vmpp 129 (214)
T KOG4208|consen 124 CHVMPP 129 (214)
T ss_pred eEEeCc
Confidence 887543
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.82 E-value=9.9e-09 Score=93.44 Aligned_cols=77 Identities=19% Similarity=0.396 Sum_probs=69.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.|.|||.+|...+.-.||++||++||.|...+++.+ +-..+.|+||++.+.++|.+||+.|+ .|+.|.|+-++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 588999999999999999999999999999999887 44467899999999999999999999 999999999876
Q ss_pred CCc
Q 020954 142 NSR 144 (319)
Q Consensus 142 ~~~ 144 (319)
...
T Consensus 485 Ep~ 487 (940)
T KOG4661|consen 485 EPG 487 (940)
T ss_pred Ccc
Confidence 543
No 127
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.79 E-value=9.7e-09 Score=95.75 Aligned_cols=81 Identities=26% Similarity=0.406 Sum_probs=71.5
Q ss_pred CCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee-------cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS-------TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 227 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~-------~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
.++.++.|||+||+..++++.|...|..||.|.+|+|+- .....||||-|.+..+|++|++.|+|..+.+.
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~-- 247 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY-- 247 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee--
Confidence 356688999999999999999999999999999999974 22334999999999999999999999999966
Q ss_pred CCeEEEEecCCC
Q 020954 300 SDGIRLEFAKSR 311 (319)
Q Consensus 300 G~~i~V~~ak~~ 311 (319)
.|++-|+|.-
T Consensus 248 --e~K~gWgk~V 257 (877)
T KOG0151|consen 248 --EMKLGWGKAV 257 (877)
T ss_pred --eeeecccccc
Confidence 5999999754
No 128
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=4.3e-09 Score=95.85 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=63.2
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCC
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSP 298 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~ 298 (319)
+.+..+|+|-|||.++++++|..+|+.||+|+.|+... ...+..||+|-|..+|++|+++||+..|.+++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 34578999999999999999999999999999988765 45679999999999999999999999999664
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.75 E-value=1.4e-09 Score=95.54 Aligned_cols=147 Identities=17% Similarity=0.294 Sum_probs=116.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcC--CCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC-----CCcEEEEEEccc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREF--PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLAKS 141 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----~g~~l~v~~a~~ 141 (319)
..+|++||.+.++.+||..+|... +.-..+.+. .||+||.+.+...|.+|++.++ .|+.+.+++...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 578999999999999999999763 211233332 6899999999999999999998 788887766543
Q ss_pred CCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 020954 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (319)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
+..
T Consensus 76 kkq----------------------------------------------------------------------------- 78 (584)
T KOG2193|consen 76 KKQ----------------------------------------------------------------------------- 78 (584)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 110
Q ss_pred CCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee-cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCC
Q 020954 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS-TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTS 300 (319)
Q Consensus 222 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~-~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G 300 (319)
.++.+-|+|+|....|+.|..+..+||.+..|..+. +...-..-|+|.+.+.+..||..|||..+....
T Consensus 79 --------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~-- 148 (584)
T KOG2193|consen 79 --------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQH-- 148 (584)
T ss_pred --------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhh--
Confidence 144588999999999999999999999999987653 222224567899999999999999999998764
Q ss_pred CeEEEEecCC
Q 020954 301 DGIRLEFAKS 310 (319)
Q Consensus 301 ~~i~V~~ak~ 310 (319)
++|.|--.
T Consensus 149 --~k~~YiPd 156 (584)
T KOG2193|consen 149 --LKVGYIPD 156 (584)
T ss_pred --hhcccCch
Confidence 88887543
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.74 E-value=4.2e-08 Score=82.50 Aligned_cols=78 Identities=26% Similarity=0.303 Sum_probs=71.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccCC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (319)
.+|+|.||++.|+++||++||..||.+..+.+.++ .|.+.|.|-|.|...++|..|++.++ .|+.|++......+
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 78999999999999999999999999999999888 89999999999999999999999999 99999998876655
Q ss_pred ccc
Q 020954 144 RSK 146 (319)
Q Consensus 144 ~~~ 146 (319)
...
T Consensus 164 ~~~ 166 (243)
T KOG0533|consen 164 QSK 166 (243)
T ss_pred ccc
Confidence 543
No 131
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.72 E-value=9e-08 Score=65.64 Aligned_cols=69 Identities=20% Similarity=0.370 Sum_probs=47.2
Q ss_pred CEEEEcCCCCCCCHHH----HHHHhhcCC-CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 232 ATLFVANLGPTCTEQE----LTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~----L~~~F~~fG-~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
+.|+|.|||.+.+... |++++..+| .|..|. .+.|+|.|.+.+.|.+|.+.|+|..+. |++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVf----G~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVF----GNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SS----SS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccc----cceEEEE
Confidence 4699999999887654 557777887 455542 357999999999999999999999999 5579999
Q ss_pred ecCC
Q 020954 307 FAKS 310 (319)
Q Consensus 307 ~ak~ 310 (319)
|...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9843
No 132
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.70 E-value=4.2e-08 Score=89.03 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=63.0
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee----cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~----~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
..+|||+|||.+++.++|+++|..||.|+...|.. +...+||||+|.+.++++.||++- =..|+ |++|.|+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig----~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG----GRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC----CeeEEEE
Confidence 45699999999999999999999999999988765 223369999999999999999955 55566 5579998
Q ss_pred ecCCC
Q 020954 307 FAKSR 311 (319)
Q Consensus 307 ~ak~~ 311 (319)
-.+..
T Consensus 363 ek~~~ 367 (419)
T KOG0116|consen 363 EKRPG 367 (419)
T ss_pred ecccc
Confidence 66653
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.69 E-value=1.2e-07 Score=86.16 Aligned_cols=76 Identities=21% Similarity=0.395 Sum_probs=63.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEcc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAK 140 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a~ 140 (319)
....+|||+|||.++++++|+++|..||.|+...|... .++...||||+|.+.++++.||++-- +++.|.|+--+
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 34567999999999999999999999999988776554 35555999999999999999997655 88999997654
Q ss_pred c
Q 020954 141 S 141 (319)
Q Consensus 141 ~ 141 (319)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 4
No 134
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=1.5e-08 Score=83.39 Aligned_cols=70 Identities=19% Similarity=0.398 Sum_probs=65.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecCC
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKS 310 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~ 310 (319)
.+||++|+..+.+.+|..+|..||.|.+|.+.. +|+||+|++..+|..|+..|||+.|.+. .+.|+|++.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~e----~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCGE----RLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceecce----eeeeecccc
Confidence 599999999999999999999999999999875 4899999999999999999999999955 499999985
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.68 E-value=1e-07 Score=80.12 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=68.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC---CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG---PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~---~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
..+.|+|.||+..++++||+++|..||.++.+-+-.+.. .+.|=|.|...++|.+|++.+||..+. |+.|++.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld----G~~mk~~ 157 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD----GRPMKIE 157 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC----CceeeeE
Confidence 347899999999999999999999999999888876443 469999999999999999999998888 5568888
Q ss_pred ecCCCC
Q 020954 307 FAKSRM 312 (319)
Q Consensus 307 ~ak~~~ 312 (319)
...+..
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 766554
No 136
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.63 E-value=2.7e-07 Score=66.52 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=62.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhc--CCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC--------CCcEEEE
Q 020954 69 RTLFVAGLPEDVKPREIYNLFRE--FPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN--------KGSTLYI 136 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~--~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~--------~g~~l~v 136 (319)
+||.|+|||...|.++|.+++.. .|...-+.|..| ++.+.|||||.|.+.+.|.+..+.++ ..+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 69999999999999999998875 455666777777 78899999999999999999999888 5667777
Q ss_pred EEccc
Q 020954 137 DLAKS 141 (319)
Q Consensus 137 ~~a~~ 141 (319)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77764
No 137
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.59 E-value=6.2e-07 Score=64.68 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=64.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcC--CCceEEEEee----cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKC--PGFLKLKIQS----TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~f--G~i~~v~i~~----~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
+||.|+|||...|.++|.+++... |...-+.+.- ..+.|||||.|.+.++|.+-.+.++|+.+......+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888653 4444444433 3456799999999999999999999999976554567899
Q ss_pred EecCCC
Q 020954 306 EFAKSR 311 (319)
Q Consensus 306 ~~ak~~ 311 (319)
+||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 999743
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=2.2e-08 Score=80.84 Aligned_cols=75 Identities=23% Similarity=0.172 Sum_probs=66.1
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec--CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST--YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~--~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
.+||||.|+-..++|+-|.++|-+-|.|.+|.|..+ ....||||.|.++-+..-|++.|||-.+.+. .|+|.+-
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~----e~q~~~r 84 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEED----EEQRTLR 84 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccc----hhhcccc
Confidence 679999999999999999999999999999999863 3334999999999999999999999999965 4777754
Q ss_pred C
Q 020954 309 K 309 (319)
Q Consensus 309 k 309 (319)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 3
No 139
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.55 E-value=8.2e-08 Score=84.02 Aligned_cols=77 Identities=19% Similarity=0.357 Sum_probs=67.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEccc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKS 141 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~ 141 (319)
.+++|||++|+.++++++|++.|++||.|..+.++.| +.+.+||+||.|.+.+++.+++..-- +|+.+.|..|..
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 4579999999999999999999999999999888888 78899999999999999999875432 899999988765
Q ss_pred CC
Q 020954 142 NS 143 (319)
Q Consensus 142 ~~ 143 (319)
+.
T Consensus 176 k~ 177 (311)
T KOG4205|consen 176 KE 177 (311)
T ss_pred hh
Confidence 43
No 140
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.54 E-value=9.8e-08 Score=83.38 Aligned_cols=196 Identities=16% Similarity=0.064 Sum_probs=119.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCC-----CCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEcc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST-----QNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAK 140 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a~ 140 (319)
..|-|.||.+.+|.++++.||.-.|.|.++.|+-+- ......|||.|.|...+..|.++-| -++.|.|-.+-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 578999999999999999999999999999987641 1234579999999999999988777 66666664432
Q ss_pred cCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 020954 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (319)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
.....-+. .... -... ...-+...+.+. ++... .....+..+.+....+.
T Consensus 88 ~~~~p~r~-af~~------l~~~---------navprll~pdg~---------Lp~~~-----~lt~~nh~p~ailktP~ 137 (479)
T KOG4676|consen 88 DEVIPDRF-AFVE------LADQ---------NAVPRLLPPDGV---------LPGDR-----PLTKINHSPNAILKTPE 137 (479)
T ss_pred CCCCccHH-HHHh------cCcc---------cccccccCCCCc---------cCCCC-----ccccccCCccceecCCC
Confidence 21111100 0000 0000 000000000000 00000 00000000000000000
Q ss_pred CCC---CCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 221 APS---GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 221 ~~~---~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
.+. ......-.++|+|.+|...+...++.++|..+|+|...++.......++-|+|....+...|+. ++|+.+.
T Consensus 138 Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 138 LPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred CChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 000 0000112468999999999999999999999999999988876666688899999999999988 7787776
No 141
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.53 E-value=1.3e-05 Score=75.34 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=58.8
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCc-eEEEEee-cCC--CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGF-LKLKIQS-TYG--PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i-~~v~i~~-~~~--~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
.++|-+.|+|++++-+||.++|..|--+ .+|++.. +++ +|-|.|-|++.++|.+|...|+++.|.++ +|+|.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr----~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNR----VVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccce----eEEEE
Confidence 4488899999999999999999999643 3444443 233 45999999999999999999999999976 47765
No 142
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.50 E-value=4.7e-07 Score=78.11 Aligned_cols=77 Identities=25% Similarity=0.268 Sum_probs=66.1
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCce--------EEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFL--------KLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~--------~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
++.|||.|||.++|.+++.++|+++|.|. .|+|..+. -+|=|.+.|--.++...|++.|++..|.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r---- 209 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR---- 209 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc----
Confidence 56799999999999999999999999775 46666533 3568999999999999999999999999
Q ss_pred CCeEEEEecCCC
Q 020954 300 SDGIRLEFAKSR 311 (319)
Q Consensus 300 G~~i~V~~ak~~ 311 (319)
|+.|+|+-|+=.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 668999988643
No 143
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.45 E-value=3.2e-07 Score=77.38 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=68.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
....+||+|+.+.+|.+++...|+.+|.|..|.+..++ .++|+||+|.+.+.++.|+. |||..|. |+.|.|
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~----~~~i~v 174 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP----GPAIEV 174 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc----ccccee
Confidence 46689999999999999999999999999988887643 35699999999999999999 9999999 557999
Q ss_pred EecCCC
Q 020954 306 EFAKSR 311 (319)
Q Consensus 306 ~~ak~~ 311 (319)
++.+..
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 987654
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.44 E-value=3.9e-07 Score=85.35 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=68.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-----CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-----TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-----~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~ 135 (319)
+..++.|||+||++.++++.|...|..||.|.+++|+.. ..+.+-|+||.|-+..+|++|+..|+ .+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 445788999999999999999999999999999999875 45567789999999999999999999 888889
Q ss_pred EEEccc
Q 020954 136 IDLAKS 141 (319)
Q Consensus 136 v~~a~~ 141 (319)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 988864
No 145
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.40 E-value=7.7e-06 Score=71.62 Aligned_cols=157 Identities=17% Similarity=0.075 Sum_probs=100.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccE--EEEecCCCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEE
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYES--SHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDL 138 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~ 138 (319)
..+.+.-|-.++||+.-++.+|-.+|..--.... +......|+..|.+.|.|.|.+.-+.|++.-. .++.|.|--
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYk 135 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYK 135 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeec
Confidence 3455566778899999999999999986332211 11122257778999999999988888886554 667776644
Q ss_pred cccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 020954 139 AKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNN 218 (319)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (319)
+......+-... ++..
T Consensus 136 a~ge~f~~iagg--------------------------~s~e-------------------------------------- 151 (508)
T KOG1365|consen 136 ATGEEFLKIAGG--------------------------TSNE-------------------------------------- 151 (508)
T ss_pred cCchhheEecCC--------------------------cccc--------------------------------------
Confidence 432221111000 0000
Q ss_pred CCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcC----CCceEEEEee---cCCCCEEEEEecChHHHHHHHH
Q 020954 219 SSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKC----PGFLKLKIQS---TYGPPVAFVDFQDTVSSTAALN 287 (319)
Q Consensus 219 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~f----G~i~~v~i~~---~~~~~~aFV~F~~~~~A~~Al~ 287 (319)
.....+ ...--.|-+++||+++++.++.++|.+- |..+.|-+++ ++-.|-|||.|..+++|+.||.
T Consensus 152 -~~~fls--k~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 152 -AAPFLS--KENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred -CCCCCC--cccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH
Confidence 000000 0112356789999999999999999642 2444555554 3345699999999999999987
No 146
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.38 E-value=8.3e-07 Score=65.54 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=40.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCC
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGT 292 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~ 292 (319)
+.|+|.++...++.++|+++|+.||.|..|.+.. +...|+|.|.+.++|++|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHhc
Confidence 5799999999999999999999999999999875 3448999999999999999877544
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.37 E-value=4e-07 Score=75.37 Aligned_cols=69 Identities=20% Similarity=0.416 Sum_probs=62.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEE
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v 136 (319)
.-+||.|.|..+++++.|-..|++|-.....+++++ +|+++||+||.|.+..++..|+.+++ +.+.|++
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 467999999999999999999999999888888887 89999999999999999999999999 5555555
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.37 E-value=6.8e-07 Score=75.43 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=67.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
.-..+.+||+|+.+.+|.+++...|+.||.|..+.|..+ .+..+||+||+|.+.+.+++|+. |+ .|+.+.+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 445689999999999999999999999999988888777 66799999999999999999998 77 788888877
Q ss_pred cccC
Q 020954 139 AKSN 142 (319)
Q Consensus 139 a~~~ 142 (319)
.+-+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6543
No 149
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.12 E-value=6e-06 Score=71.11 Aligned_cols=77 Identities=9% Similarity=0.335 Sum_probs=63.0
Q ss_pred cCEEEEcCCCCCCCHHHH----H--HHhhcCCCceEEEEeecC-----CCCE--EEEEecChHHHHHHHHHhCCCcccCC
Q 020954 231 CATLFVANLGPTCTEQEL----T--QVFSKCPGFLKLKIQSTY-----GPPV--AFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L----~--~~F~~fG~i~~v~i~~~~-----~~~~--aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
.+-+||-+|+..+-.+++ + ++|.+||.|..|-+-+.. ..+. .||+|.+.++|.+||.+.+|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D-- 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD-- 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc--
Confidence 557899999999877763 2 799999999999886522 1112 399999999999999999999999
Q ss_pred CCCCeEEEEecCCC
Q 020954 298 PTSDGIRLEFAKSR 311 (319)
Q Consensus 298 ~~G~~i~V~~ak~~ 311 (319)
||.|+..|...+
T Consensus 192 --Gr~lkatYGTTK 203 (480)
T COG5175 192 --GRVLKATYGTTK 203 (480)
T ss_pred --CceEeeecCchH
Confidence 557999998765
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.08 E-value=2.7e-05 Score=53.61 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=46.4
Q ss_pred ceEEEeCCCCCCCHHH----HHHHhhcCCC-ccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 69 RTLFVAGLPEDVKPRE----IYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~----L~~~F~~~G~-v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
..|||.|||.+.+... |++|+.-||. |.+| . .+.|+|.|.+.+.|.+|.+.|+ .|..|.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 5689999999988775 6778888886 4433 1 3669999999999999999999 9999999987
Q ss_pred cc
Q 020954 140 KS 141 (319)
Q Consensus 140 ~~ 141 (319)
..
T Consensus 75 ~~ 76 (90)
T PF11608_consen 75 PK 76 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 151
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.03 E-value=5.8e-06 Score=73.42 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=59.3
Q ss_pred CCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec-----C------------CCCEEEEEecChHHHHHHHHHh
Q 020954 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST-----Y------------GPPVAFVDFQDTVSSTAALNNL 289 (319)
Q Consensus 227 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~-----~------------~~~~aFV~F~~~~~A~~Al~~l 289 (319)
+.-++++|.+.|||.+-..+.|.+||+.+|.|+.|+|+.- . .+-+|||+|+..+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3347899999999999999999999999999999999862 0 1228999999999999999988
Q ss_pred CCCcccCC
Q 020954 290 QGTILYSS 297 (319)
Q Consensus 290 nG~~i~~~ 297 (319)
|....+..
T Consensus 307 ~~e~~wr~ 314 (484)
T KOG1855|consen 307 NPEQNWRM 314 (484)
T ss_pred chhhhhhh
Confidence 76555533
No 152
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.02 E-value=1.2e-05 Score=51.35 Aligned_cols=52 Identities=12% Similarity=0.278 Sum_probs=42.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHH
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAAL 286 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al 286 (319)
+.|-|.+.+.+.. +++...|..||+|+++.+.. ...+.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 4688999998776 45556899999999988873 4459999999999999995
No 153
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.86 E-value=4.5e-05 Score=55.44 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=52.8
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEe-----------ecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQ-----------STYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~-----------~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
.+.|.|-+.|... ...|.+.|++||+|.+..-. ...+..+.-|+|++..+|.+||. -||..|.+..
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~- 82 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL- 82 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE-
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE-
Confidence 4568899999984 57788899999999887511 11345599999999999999999 8999999653
Q ss_pred CCeEEEEecC
Q 020954 300 SDGIRLEFAK 309 (319)
Q Consensus 300 G~~i~V~~ak 309 (319)
.+-|.|.+
T Consensus 83 --mvGV~~~~ 90 (100)
T PF05172_consen 83 --MVGVKPCD 90 (100)
T ss_dssp --EEEEEE-H
T ss_pred --EEEEEEcH
Confidence 34566663
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.85 E-value=3.9e-05 Score=56.66 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=37.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 70 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
.|.|.++...++.++|+++|+.||.|..|.+.. |.. .|||.|.+.++|+.|+..+.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~--~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GDT--EGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T-S--EEEEEESS---HHHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CCC--EEEEEECCcchHHHHHHHHH
Confidence 578999999999999999999999999888865 433 49999999999999998776
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.83 E-value=2.5e-05 Score=68.17 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=67.3
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceE--------EEEee----cCCCCEEEEEecChHHHHHHHHHhCCCcccC
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLK--------LKIQS----TYGPPVAFVDFQDTVSSTAALNNLQGTILYS 296 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~--------v~i~~----~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~ 296 (319)
....+|||.+|+..+++++|.++|.++|.|.. |+|.+ ...|+-|.|.|+|...|+.|+..++++.+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 34668999999999999999999999997653 33333 3456699999999999999999999999995
Q ss_pred CCCCCeEEEEecCCCC
Q 020954 297 SPTSDGIRLEFAKSRM 312 (319)
Q Consensus 297 ~~~G~~i~V~~ak~~~ 312 (319)
.+|+|.++..+.
T Consensus 144 ----n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 ----NTIKVSLAERRT 155 (351)
T ss_pred ----CCchhhhhhhcc
Confidence 479999998775
No 156
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.82 E-value=4.2e-05 Score=72.91 Aligned_cols=7 Identities=57% Similarity=1.160 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 020954 6 PPPAGLH 12 (319)
Q Consensus 6 p~~~~~~ 12 (319)
|+|.+..
T Consensus 528 P~PP~~p 534 (1102)
T KOG1924|consen 528 PPPPPLP 534 (1102)
T ss_pred CCCCCCC
Confidence 4444444
No 157
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.74 E-value=7.7e-05 Score=63.25 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=51.5
Q ss_pred HHHHHHHhhcCCCceEEEEeecCCCC-----EEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 245 EQELTQVFSKCPGFLKLKIQSTYGPP-----VAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 245 ~~~L~~~F~~fG~i~~v~i~~~~~~~-----~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
++++++.+.+||.|..|-|....+-. ..||+|+..++|.+|+-.|||+.|+ ||.++.+|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG----Gr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG----GRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec----ceeeeheecc
Confidence 57888999999999999887643322 7899999999999999999999999 5568888754
No 158
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.72 E-value=2.1e-05 Score=65.38 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=59.5
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC------------CCC----EEEEEecChHHHHHHHHHhCCCcc
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY------------GPP----VAFVDFQDTVSSTAALNNLQGTIL 294 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~------------~~~----~aFV~F~~~~~A~~Al~~lnG~~i 294 (319)
.-+||++|||+.+.-..|+++|++||.|-+|.+.... +.. -|.|+|.+...|.++...|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4589999999999999999999999999999987521 111 689999999999999999999999
Q ss_pred cCCC
Q 020954 295 YSSP 298 (319)
Q Consensus 295 ~~~~ 298 (319)
+++.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9764
No 159
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.68 E-value=4.9e-05 Score=70.27 Aligned_cols=83 Identities=13% Similarity=0.192 Sum_probs=69.9
Q ss_pred CCCCCcCEEEEcCCCCCCCHHHHHHHhhc-CCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 226 KNVTPCATLFVANLGPTCTEQELTQVFSK-CPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 226 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.....+++|||.||=.-+|.-+|+.++.. .|.|+..+|. +-+..|||.|.+.++|..-+.+|||..+-... ++-|.
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD--kIKShCyV~yss~eEA~atr~AlhnV~WP~sN-PK~L~ 515 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD--KIKSHCYVSYSSVEEAAATREALHNVQWPPSN-PKHLI 515 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH--HhhcceeEecccHHHHHHHHHHHhccccCCCC-CceeE
Confidence 44567899999999999999999999995 5566666554 34558999999999999999999999988776 88899
Q ss_pred EEecCCC
Q 020954 305 LEFAKSR 311 (319)
Q Consensus 305 V~~ak~~ 311 (319)
|.|....
T Consensus 516 adf~~~d 522 (718)
T KOG2416|consen 516 ADFVRAD 522 (718)
T ss_pred eeecchh
Confidence 9998754
No 160
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=0.00015 Score=60.54 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=58.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec---CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~---~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
.|+|.||..-++.+.|.+.|+.||.|.+..++.+ +..+-++|.|...-.|.+|+..++-.-+....+|++.-|.
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 6999999999999999999999999987665542 2334899999999999999998865555555445554443
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.57 E-value=0.0002 Score=45.73 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=42.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHH
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~ 125 (319)
+.|-|.+.+.+..+ ++...|..||+|..+.+- ....+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC----CCCcEEEEEECCHHHHHhhC
Confidence 67889999887764 455688899999988774 33557999999999999985
No 162
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.49 E-value=0.0005 Score=53.04 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=45.8
Q ss_pred HHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecCC
Q 020954 246 QELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKS 310 (319)
Q Consensus 246 ~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~ 310 (319)
++|.+.|+.||+++-|++..+ .-+|+|.+-++|.+|+. |+|..+. |+.|+|.....
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~----g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVN----GRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEET----TEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEEC----CEEEEEEeCCc
Confidence 377789999999999998863 58999999999999999 9999999 55799987553
No 163
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.49 E-value=6.7e-05 Score=65.61 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=64.2
Q ss_pred cceEE-EeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 68 VRTLF-VAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 68 ~~~l~-V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..++| |+||+.++++++|+..|..+|.|..+++..+ ++.++|||||.|.+...+..++.. + .++++.+++..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 45666 9999999999999999999999999998776 889999999999999999999874 3 78888887765
Q ss_pred c
Q 020954 141 S 141 (319)
Q Consensus 141 ~ 141 (319)
.
T Consensus 263 ~ 263 (285)
T KOG4210|consen 263 P 263 (285)
T ss_pred C
Confidence 4
No 164
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.48 E-value=0.00013 Score=63.72 Aligned_cols=79 Identities=20% Similarity=0.264 Sum_probs=66.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCcc--------EEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----C
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYE--------SSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----K 130 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~ 130 (319)
...+.||||-+|+..+++++|.++|.++|.|. .|+|..+ +++.+|-|.|.|.|...|+.|+.-++ +
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45568999999999999999999999999882 2344444 88899999999999999999999888 7
Q ss_pred CcEEEEEEcccCC
Q 020954 131 GSTLYIDLAKSNS 143 (319)
Q Consensus 131 g~~l~v~~a~~~~ 143 (319)
+..|+|.+|....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 8888888876544
No 165
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.37 E-value=8.5e-05 Score=62.05 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=48.7
Q ss_pred HHHHHHhh-cCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 246 QELTQVFS-KCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 246 ~~L~~~F~-~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
++|...|+ +||+|+.+++..+. -.|-++|.|...++|++|++.|||.++. |++|...+.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~----G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN----GRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc----CCcceeeecC
Confidence 45555566 89999999876522 2457999999999999999999999999 6689988753
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.36 E-value=0.00049 Score=59.57 Aligned_cols=73 Identities=15% Similarity=0.361 Sum_probs=57.5
Q ss_pred ceEEEeCCCCCCCHHH----H--HHHhhcCCCccEEEEecCC---CCCccE--EEEEEcCHHHHHHHHHHcC----CCcE
Q 020954 69 RTLFVAGLPEDVKPRE----I--YNLFREFPGYESSHLRSST---QNSQPF--AFAVFSDQQSALGAMYALN----KGST 133 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~----L--~~~F~~~G~v~~v~i~~~~---~~~~g~--afV~f~~~~~A~~A~~~l~----~g~~ 133 (319)
.-+||-+|++.+-.++ | .++|.+||.|..|.+...+ ....+. .||+|.+.++|.+||...+ +|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999999987776 2 5799999999888776542 111121 4999999999999999998 9999
Q ss_pred EEEEEccc
Q 020954 134 LYIDLAKS 141 (319)
Q Consensus 134 l~v~~a~~ 141 (319)
|+..|...
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99988743
No 167
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.29 E-value=1.5e-05 Score=76.56 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=102.6
Q ss_pred ceEEEeCCCCCCCHH-HHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEcccC
Q 020954 69 RTLFVAGLPEDVKPR-EIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKSN 142 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~-~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~~ 142 (319)
+..++.|+.+..... ..++.|..+|.|+.|++-.. .-....++++++....+++.|...-. .++...+..+...
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~ 651 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAE 651 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCch
Confidence 566777887776666 56888899999999888652 22223367888887777777753322 3333333222211
Q ss_pred CcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 020954 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (319)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (319)
. ..+ ...
T Consensus 652 ~-----~~~--------------------------------------------------------------------~~k 658 (881)
T KOG0128|consen 652 E-----KEE--------------------------------------------------------------------NFK 658 (881)
T ss_pred h-----hhh--------------------------------------------------------------------ccC
Confidence 1 000 000
Q ss_pred CCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEe----ecCCCCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQ----STYGPPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 223 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~----~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
..+.......++||+||+..+.+++|...|+.+|.+..+++. .+.-+|+|+|.|...+++.+|+...++..++
T Consensus 659 vs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 659 VSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred cCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 011111235689999999999999999999999988877765 2445679999999999999999866666555
No 168
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00091 Score=61.30 Aligned_cols=73 Identities=23% Similarity=0.340 Sum_probs=61.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhh-cCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcCCCcEEEEEEcc
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFR-EFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALNKGSTLYIDLAK 140 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~~g~~l~v~~a~ 140 (319)
.-++.+|||||+||.-++-++|..+|+ .||.|..+-|-.| -+-.+|-|=|+|.+..+--+||. .+-|.++-.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs----arFvql~h~d 441 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS----ARFVQLDHTD 441 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh----hheEEEeccc
Confidence 356679999999999999999999999 6999998888776 45678899999999999999994 4556664443
No 169
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.26 E-value=0.0017 Score=42.50 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=44.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcC---CCceEEEEeecCCCCEEEEEecChHHHHHHHHHh
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKC---PGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNL 289 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~f---G~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~l 289 (319)
..|+|+|++. ++.++|+.+|..| ....+|..+.+.+ |-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 3699999966 7889999999999 2355677776655 899999999999999875
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00063 Score=62.83 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=57.5
Q ss_pred cCEEEEcCCCCC--C----CHHHHHHHhhcCCCceEEEEee---cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCC
Q 020954 231 CATLFVANLGPT--C----TEQELTQVFSKCPGFLKLKIQS---TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSD 301 (319)
Q Consensus 231 ~~~l~V~nLp~~--~----t~~~L~~~F~~fG~i~~v~i~~---~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~ 301 (319)
..+|+|.|+|-- . -..-|..+|+++|.|+.+.+.. ++.+||.|++|.+..+|..|++.|||+.|.-+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH--- 134 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH--- 134 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc---
Confidence 558999999952 1 1234568999999999988874 335669999999999999999999999998553
Q ss_pred eEEEE
Q 020954 302 GIRLE 306 (319)
Q Consensus 302 ~i~V~ 306 (319)
.+.|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 55554
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0016 Score=60.22 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=58.1
Q ss_pred CCCcceEEEeCCCCC--CCHH----HHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC-----CCc
Q 020954 65 YDEVRTLFVAGLPED--VKPR----EIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN-----KGS 132 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~--~t~~----~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~-----~g~ 132 (319)
+.....|+|.|+|.- ..-+ -|..+|+++|+|..+.+..+ .|.++||.|++|.+..+|+.|++.|| ...
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 355578899999853 2222 26789999999988888866 67799999999999999999999999 555
Q ss_pred EEEEEE
Q 020954 133 TLYIDL 138 (319)
Q Consensus 133 ~l~v~~ 138 (319)
++.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 555543
No 172
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.13 E-value=0.0022 Score=55.87 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=53.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCC--ccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPG--YESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
..-.+|||||-+++|++||.+.+..-|- +.++++..+ .|.++|||+|...+..+.++-++.|-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP 145 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILP 145 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcc
Confidence 3456899999999999999998887674 566666555 89999999999999999999998877
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.11 E-value=0.00054 Score=61.25 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=55.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-------CCC--------CccEEEEEEcCHHHHHHHHHHcC
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-------TQN--------SQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-------~~~--------~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
-+.+||.+-|||.+-..+.|.+||..+|.|..|+|... .+. .+-+|+|+|...+.|.+|.+.++
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 36799999999999888999999999999999998653 121 24579999999999999999997
No 174
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.06 E-value=0.0067 Score=41.95 Aligned_cols=61 Identities=28% Similarity=0.443 Sum_probs=43.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcCCCcEEEE
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNKGSTLYI 136 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~~g~~l~v 136 (319)
.-.||+ +|......||.++|+.||.|.-..| .++ .|||...+.+.|..++..+......+|
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~dT-----SAfV~l~~r~~~~~v~~~~~~~~~y~i 70 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-NDT-----SAFVALHNRDQAKVVMNTLKKNSSYRI 70 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CTT-----EEEEEECCCHHHHHHHHHHTT-SSSEE
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cCC-----cEEEEeecHHHHHHHHHHhccCCceEE
Confidence 455666 9999999999999999999865444 333 499999999999999998883333333
No 175
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.01 E-value=0.0043 Score=47.32 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=54.5
Q ss_pred cceEEEeCCCCCCCH-HH---HHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEcc
Q 020954 68 VRTLFVAGLPEDVKP-RE---IYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAK 140 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~-~~---L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a~ 140 (319)
..||.|+=|..++.- +| +...++.||.|.+|.+. |+. .|.|.|.|..+|-+|+.+++ .|..+++.|-.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---Grq--savVvF~d~~SAC~Av~Af~s~~pgtm~qCsWqq 160 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQ--SAVVVFKDITSACKAVSAFQSRAPGTMFQCSWQQ 160 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCc--eEEEEehhhHHHHHHHHhhcCCCCCceEEeeccc
Confidence 389999887777533 33 45566789999999885 533 49999999999999999999 89999998854
No 176
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.99 E-value=0.0047 Score=47.13 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=56.5
Q ss_pred CCCcCEEEEcCCCCCC----CHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTC----TEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~----t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
+++-.+|.|+=|..++ +-..+....+.||.|.+|.+.. +.-|.|.|.|..+|-+|+.+++...- |..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af~s~~p-----gtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAFQSRAP-----GTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhhcCCCC-----CceE
Confidence 3455678887665553 2334456678899999999874 34799999999999999999987444 3458
Q ss_pred EEEecCCCC
Q 020954 304 RLEFAKSRM 312 (319)
Q Consensus 304 ~V~~ak~~~ 312 (319)
+.+|-..=+
T Consensus 155 qCsWqqrFM 163 (166)
T PF15023_consen 155 QCSWQQRFM 163 (166)
T ss_pred Eeecccccc
Confidence 888876543
No 177
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.94 E-value=0.006 Score=39.97 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=43.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcC----CCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREF----PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL 128 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~----G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l 128 (319)
..|+|.++ .+++.+||+.+|..| + ...|..+.|+. |-|.|.+.+.|.+||..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~-~~~IEWIdDtS-----cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEG-PFRIEWIDDTS-----CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCC-CceEEEecCCc-----EEEEECCHHHHHHHHHcC
Confidence 57999999 459999999999998 4 45666665554 999999999999999764
No 178
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.94 E-value=0.0012 Score=58.43 Aligned_cols=73 Identities=22% Similarity=0.379 Sum_probs=58.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC--C-----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--G-----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~--~-----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
+|.|.||..++|.++++.||...|.|..++|+... . ...|||.|.|...+..|-. |.++.|-++. .|.+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdra---liv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRA---LIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeee---EEEE
Confidence 79999999999999999999999999999998622 1 1289999999999998866 7777776553 3444
Q ss_pred EecC
Q 020954 306 EFAK 309 (319)
Q Consensus 306 ~~ak 309 (319)
-|..
T Consensus 85 p~~~ 88 (479)
T KOG4676|consen 85 PYGD 88 (479)
T ss_pred ecCC
Confidence 4443
No 179
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.89 E-value=0.00026 Score=68.69 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=66.2
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC-C--CEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG-P--PVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~-~--~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
...+.+||++||+..+++.+|+..|..+|.|.+|.|..-.. . .||||.|.+...+-+|+..+.|..|... .++
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g----~~r 444 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG----THR 444 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccC----ccc
Confidence 34588999999999999999999999999999999976322 2 2999999999999999999999999876 366
Q ss_pred EEec
Q 020954 305 LEFA 308 (319)
Q Consensus 305 V~~a 308 (319)
+.+.
T Consensus 445 ~glG 448 (975)
T KOG0112|consen 445 IGLG 448 (975)
T ss_pred cccc
Confidence 6665
No 180
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.86 E-value=0.00073 Score=65.25 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=65.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecCCC
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKSR 311 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~~ 311 (319)
+.++.|.+-+.+..-|..+|+.||.|.+++..++-+ +|.|+|.+.+.|..|+++|+|+++... |-+.+|.||+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~--g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVT--GAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccccc--CCceeEEecccc
Confidence 455666667788899999999999999999986544 899999999999999999999998766 789999999864
No 181
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.77 E-value=0.0014 Score=54.80 Aligned_cols=62 Identities=11% Similarity=0.235 Sum_probs=52.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--C--------CCCcc----EEEEEEcCHHHHHHHHHHcC
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--T--------QNSQP----FAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~--------~~~~g----~afV~f~~~~~A~~A~~~l~ 129 (319)
+-.||+++||+.+....|+++|+.||.|-.|.|... . |.+.+ -|+|+|.+...|..+...||
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 356999999999999999999999999999988654 1 22222 27799999999999999998
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.69 E-value=0.0047 Score=50.19 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=53.5
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhc-CCCc---eEEEEeec--C---C-CCEEEEEecChHHHHHHHHHhCCCcccCCCCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSK-CPGF---LKLKIQST--Y---G-PPVAFVDFQDTVSSTAALNNLQGTILYSSPTS 300 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~-fG~i---~~v~i~~~--~---~-~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G 300 (319)
...|.|++||+++|++++++.++. ++.. ..+.-... . . -..|+|.|.+.+++..-++.++|+.|.+.. |
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k-g 85 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK-G 85 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT-S
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC-C
Confidence 558999999999999999998887 7665 33431111 1 1 118999999999999999999999888776 6
Q ss_pred C--eEEEEecCC
Q 020954 301 D--GIRLEFAKS 310 (319)
Q Consensus 301 ~--~i~V~~ak~ 310 (319)
. .-.|+||--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 5 345666644
No 183
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.68 E-value=0.0016 Score=54.59 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=55.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
..|||.||..-++-|.|.+-|+.||.|+...++.| .++..+-++|+|...-.|.+|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 78999999999999999999999999977666665 77888889999999999999999887
No 184
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.65 E-value=0.0008 Score=58.62 Aligned_cols=76 Identities=7% Similarity=0.238 Sum_probs=60.8
Q ss_pred CEEEEcCCCCCCCHHHHH---HHhhcCCCceEEEEeecC----C---CCEEEEEecChHHHHHHHHHhCCCcccCCCCCC
Q 020954 232 ATLFVANLGPTCTEQELT---QVFSKCPGFLKLKIQSTY----G---PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSD 301 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~---~~F~~fG~i~~v~i~~~~----~---~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~ 301 (319)
+-+||-+|+.....+.+. +.|.+||.|..|.+..+. + ..-++|+|...++|.+||...+|..+. |+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d----g~ 153 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD----GR 153 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh----hh
Confidence 457888888776544443 689999999999887633 1 227899999999999999999999999 55
Q ss_pred eEEEEecCCC
Q 020954 302 GIRLEFAKSR 311 (319)
Q Consensus 302 ~i~V~~ak~~ 311 (319)
.|+.+|+.++
T Consensus 154 ~lka~~gttk 163 (327)
T KOG2068|consen 154 ALKASLGTTK 163 (327)
T ss_pred hhHHhhCCCc
Confidence 6888888766
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.49 E-value=0.0014 Score=54.85 Aligned_cols=58 Identities=14% Similarity=0.291 Sum_probs=47.2
Q ss_pred HHHHHHhh-cCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 83 REIYNLFR-EFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 83 ~~L~~~F~-~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+||...|+ +||+|+++++-.+ .-.-.|-+||.|...++|++|++.|| .|++|..++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34555555 8999999987766 33446779999999999999999999 99999998863
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.45 E-value=0.005 Score=57.47 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=60.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhh-cCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC-------CCcEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFR-EFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-------KGSTLYI 136 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~-------~g~~l~v 136 (319)
....+.|||.||-.-.|.-+|+.|+. ..|.|++.+| |.- +..|||.|.+.++|...+++|| +.+.|.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI--KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI--KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh--hcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 44568999999999999999999999 5666776633 323 3349999999999999999888 8899999
Q ss_pred EEcccCC
Q 020954 137 DLAKSNS 143 (319)
Q Consensus 137 ~~a~~~~ 143 (319)
.|+....
T Consensus 517 df~~~de 523 (718)
T KOG2416|consen 517 DFVRADE 523 (718)
T ss_pred eecchhH
Confidence 9986543
No 187
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.44 E-value=0.0055 Score=57.97 Aligned_cols=61 Identities=20% Similarity=0.138 Sum_probs=52.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEE
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v 136 (319)
-+|||+|+...+..+-++.+...+|.|.+++... |||.+|.....+.+|+..++ .|..+.+
T Consensus 41 ~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 41 DTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred ceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 7999999999999999999999999988776542 89999999999999998877 5555544
No 188
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.43 E-value=0.0034 Score=54.74 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=63.4
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCC--CceEEEEee----cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCP--GFLKLKIQS----TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG--~i~~v~i~~----~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.-++||+||-+.+|++||.+.....| .|.+++++. ..+||||+|...+..+..+-++.|--+.|.+.. +..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~---P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS---PTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC---Cee
Confidence 45799999999999999999998887 566777665 346789999999999999999999999999764 566
Q ss_pred EEecCC
Q 020954 305 LEFAKS 310 (319)
Q Consensus 305 V~~ak~ 310 (319)
++|.|.
T Consensus 157 ~~~NK~ 162 (498)
T KOG4849|consen 157 LSYNKT 162 (498)
T ss_pred eccchh
Confidence 666553
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.39 E-value=0.02 Score=39.66 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=42.9
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQG 291 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG 291 (319)
.++.||. .|..+...||.++|+.||.|.--.|. +. -|||...+.+.|..|+..++-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-DT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-TT---EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-CC---cEEEEeecHHHHHHHHHHhcc
Confidence 4567776 99999999999999999998655543 23 599999999999999998863
No 190
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.28 E-value=0.0034 Score=56.14 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=56.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecCCCC
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKSRM 312 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~~~ 312 (319)
.|||+||.+.++.++|..+|...-.-.+-.++. ..+|+||.+.+...|.+|++.++|+.-.. |+.+.|.++-.+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~--k~gyafvd~pdq~wa~kaie~~sgk~elq---Gkr~e~~~sv~kk 77 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--KSGYAFVDCPDQQWANKAIETLSGKVELQ---GKRQEVEHSVPKK 77 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee--ecceeeccCCchhhhhhhHHhhchhhhhc---CceeeccchhhHH
Confidence 599999999999999999998652111112221 23599999999999999999999975332 5579988876653
No 191
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.17 E-value=0.22 Score=42.94 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=62.2
Q ss_pred CCCCCCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCC---------CCCccEEEEEEcCHHHHHHH----HH
Q 020954 60 PAYGSYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST---------QNSQPFAFAVFSDQQSALGA----MY 126 (319)
Q Consensus 60 pp~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~---------~~~~g~afV~f~~~~~A~~A----~~ 126 (319)
|...++-.+|.|.+.|+..+++-..+..-|-+||.|++|.+..+. .+......+.|-+.+.+... ++
T Consensus 7 PkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQ 86 (309)
T PF10567_consen 7 PKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQ 86 (309)
T ss_pred CCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHH
Confidence 344556668999999999999999999999999999999998753 12345688999998876643 22
Q ss_pred HcC------CCcEEEEEEccc
Q 020954 127 ALN------KGSTLYIDLAKS 141 (319)
Q Consensus 127 ~l~------~g~~l~v~~a~~ 141 (319)
.|. ....|.+.|..-
T Consensus 87 rLsEfK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 87 RLSEFKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHHHHHhcCCcceeEEEEEE
Confidence 233 677788888754
No 192
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.07 E-value=0.13 Score=38.20 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=52.2
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCC-CceEEEEeecCCCC--EEEEEecChHHHHHHHHHhCCCcccCCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTYGPP--VAFVDFQDTVSSTAALNNLQGTILYSSP 298 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG-~i~~v~i~~~~~~~--~aFV~F~~~~~A~~Al~~lnG~~i~~~~ 298 (319)
+..+.+...|..++.++|..+.+.+- .|..++|+++.... .+.++|.+.++|..=.+.+||+.+..-+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslE 83 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLE 83 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCC
Confidence 44555666666677778877766665 56788888855433 8999999999999999999999997654
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.95 E-value=0.023 Score=46.36 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=46.0
Q ss_pred CHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhC--CCcccCCCCCCeEEEEecCCC
Q 020954 244 TEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQ--GTILYSSPTSDGIRLEFAKSR 311 (319)
Q Consensus 244 t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~ln--G~~i~~~~~G~~i~V~~ak~~ 311 (319)
..+.|+++|..|+.+..+..++ +=+-..|.|.+.++|.+|...|+ +..+.+ ..|+|-|+..-
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g----~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNG----KRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETT----EE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCC----CceEEEEcccc
Confidence 4588999999999999988885 33479999999999999999999 999994 46999998543
No 194
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=0.026 Score=48.55 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=56.5
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKS 310 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~ 310 (319)
..-|-|.+++..-. ..|..+|++||+|++...- .+..+-.|.|.+.-+|++||. -||+.|++.. -|=|.-..+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~v---miGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV---MIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccce---EEeeeecCC
Confidence 44566778888644 6777899999999886554 455599999999999999999 8999999764 344444334
Q ss_pred CC
Q 020954 311 RM 312 (319)
Q Consensus 311 ~~ 312 (319)
+.
T Consensus 270 ks 271 (350)
T KOG4285|consen 270 KS 271 (350)
T ss_pred HH
Confidence 43
No 195
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.92 E-value=0.04 Score=40.13 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=46.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEE-EecC--------CCCCccEEEEEEcCHHHHHHHHHHcC---CC-cE
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSH-LRSS--------TQNSQPFAFAVFSDQQSALGAMYALN---KG-ST 133 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-i~~~--------~~~~~g~afV~f~~~~~A~~A~~~l~---~g-~~ 133 (319)
..+.|.|=+.|.. ....|.+.|++||.|.+.. +..+ .-......-|+|.+..+|++||.... .| -.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4467888899887 4567889999999986654 1111 01234568999999999999996555 44 45
Q ss_pred EEEEEcc
Q 020954 134 LYIDLAK 140 (319)
Q Consensus 134 l~v~~a~ 140 (319)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5576664
No 196
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.70 E-value=0.063 Score=41.61 Aligned_cols=69 Identities=23% Similarity=0.239 Sum_probs=46.7
Q ss_pred ceEEEeCCC-----CCCCHH----HHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEE
Q 020954 69 RTLFVAGLP-----EDVKPR----EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYI 136 (319)
Q Consensus 69 ~~l~V~nLp-----~~~t~~----~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v 136 (319)
.||.|.=+. ...-.+ +|.+.|+.||+|.-+++.. +--+|+|.+-++|.+|+..-. +|+.|+|
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~------~~mwVTF~dg~sALaals~dg~~v~g~~l~i 101 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG------DTMWVTFRDGQSALAALSLDGIQVNGRTLKI 101 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET------TCEEEEESSCHHHHHHHHGCCSEETTEEEEE
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC------CeEEEEECccHHHHHHHccCCcEECCEEEEE
Confidence 788777665 112222 5788999999988777763 348999999999999996544 9999999
Q ss_pred EEcccCC
Q 020954 137 DLAKSNS 143 (319)
Q Consensus 137 ~~a~~~~ 143 (319)
..-..+.
T Consensus 102 ~LKtpdW 108 (146)
T PF08952_consen 102 RLKTPDW 108 (146)
T ss_dssp EE-----
T ss_pred EeCCccH
Confidence 7755443
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.32 E-value=0.27 Score=36.51 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=49.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCC-ccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
+..+.+...|..++.++|..+.+.+-. |..++|+++...++=.+++.|.+.++|......+|
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhC
Confidence 355556666666777778777776655 78889999876677789999999999999999999
No 198
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.00 E-value=0.06 Score=46.17 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=45.9
Q ss_pred HHHHHHHhhcCCCccEEEEecCCC---CCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 82 PREIYNLFREFPGYESSHLRSSTQ---NSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 82 ~~~L~~~F~~~G~v~~v~i~~~~~---~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
++++++-+.+||.|..|.|....+ ...--.||+|...++|.+|+-.|| +|+.++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 346788999999998887766511 112228999999999999999999 88888887754
No 199
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.15 Score=47.85 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=64.0
Q ss_pred CCcCEEEEcCCCCC-CCHHHHHHHhhcC----CCceEEEEeecC------------CC----------------------
Q 020954 229 TPCATLFVANLGPT-CTEQELTQVFSKC----PGFLKLKIQSTY------------GP---------------------- 269 (319)
Q Consensus 229 ~~~~~l~V~nLp~~-~t~~~L~~~F~~f----G~i~~v~i~~~~------------~~---------------------- 269 (319)
..+++|-|.||.++ +...+|.-+|+.| |.|.+|.|.+.. +.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 35789999999987 8899999998876 489999987411 11
Q ss_pred ----------------C-EEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 270 ----------------P-VAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 270 ----------------~-~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
. ||.|+|.+++.|....+.++|..+... |..|-+.|=
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS--~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS--ANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc--cceeeeeec
Confidence 1 999999999999999999999999988 666666664
No 200
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.64 E-value=0.1 Score=48.66 Aligned_cols=65 Identities=12% Similarity=0.299 Sum_probs=53.9
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhc--CCCceEEEEeecCCCCEEEEEecChHHHHHHHHH-------hCCCcccCCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSK--CPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNN-------LQGTILYSSP 298 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~--fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~-------lnG~~i~~~~ 298 (319)
.|+|.|+-|+..+-.|+++.||+. +-.+++|.+-.+.+ =||+|++..||+.|.+. +.|+.|.-|+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n---WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN---WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc---eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 567889999999999999999985 56888888876444 79999999999999765 4677777663
No 201
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.48 E-value=0.25 Score=33.78 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=39.5
Q ss_pred EEEEc-CCCCCCCHHHHHHHhhcCC-----CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 233 TLFVA-NLGPTCTEQELTQVFSKCP-----GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 233 ~l~V~-nLp~~~t~~~L~~~F~~fG-----~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
+|||. +=-..++..+|..++...+ .|-+|++..+ |+||+-.. +.|..+++.|++..+. |++|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~----gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIK----GKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SS----S----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCC----CeeEEEE
Confidence 45552 2224588889999888876 4557777652 89998754 4899999999999999 5579988
Q ss_pred ec
Q 020954 307 FA 308 (319)
Q Consensus 307 ~a 308 (319)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 64
No 202
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.44 E-value=0.067 Score=43.46 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=40.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhc-CCCc---cEEEEecC------CCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFRE-FPGY---ESSHLRSS------TQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v---~~v~i~~~------~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
.+...|.|++||+++||+++.+.++. ++.. ..+.-... ...++ |||.|.+.+++......++
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SR--aYi~F~~~~~~~~F~~~~~ 76 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSR--AYINFKNPEDLLEFRDRFD 76 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EE--EEEEESSCHHHHHHHHHCT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceE--EEEEeCCHHHHHHHHHhcC
Confidence 34578999999999999999997776 6654 23321111 22334 9999999999999998887
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.30 E-value=0.16 Score=46.21 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=59.0
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCC-CceEEEEeecCCCC--EEEEEecChHHHHHHHHHhCCCcccCCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTYGPP--VAFVDFQDTVSSTAALNNLQGTILYSSP 298 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG-~i~~v~i~~~~~~~--~aFV~F~~~~~A~~Al~~lnG~~i~~~~ 298 (319)
++.|+|-.+|-.+|..||..++..|- .|.+++++++.-.. .+.|.|.+.++|..=.+.+||+.|..-+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le 144 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLE 144 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCC
Confidence 78999999999999999999988765 68889998854333 8999999999999999999999987554
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.24 E-value=0.028 Score=51.31 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=60.1
Q ss_pred cCEEEEcCCCCCC-CHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 231 CATLFVANLGPTC-TEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 231 ~~~l~V~nLp~~~-t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
.+.|-+.-.++.. |-.+|...|.+||+|..|.+... .-.|.|+|.+..+|-+|-. .++..|+++ .|+|.|-+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~-s~~avlnnr----~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYA-SHGAVLNNR----FIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhc-cccceecCc----eeEEEEec
Confidence 4556666666653 56899999999999999998763 3379999999999988866 899999955 59999988
Q ss_pred CC
Q 020954 310 SR 311 (319)
Q Consensus 310 ~~ 311 (319)
..
T Consensus 445 ps 446 (526)
T KOG2135|consen 445 PS 446 (526)
T ss_pred CC
Confidence 63
No 205
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.21 E-value=0.1 Score=49.73 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=58.6
Q ss_pred CCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 227 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
..++..++||+|+-..+..+-++.+...+|.|.+++... |||..|....-+.+|+..|+-..+++.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 345577899999999999999999999999999887765 999999999999999999998888754
No 206
>PHA01732 proline-rich protein
Probab=92.87 E-value=0.18 Score=34.75 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=5.9
Q ss_pred CCCCCCCCCCC
Q 020954 15 YYQTPPPPPPP 25 (319)
Q Consensus 15 ~~~~p~p~~~p 25 (319)
|+++++++++|
T Consensus 4 fgAP~~p~ppP 14 (94)
T PHA01732 4 FRAPKPPEPPA 14 (94)
T ss_pred cCCCCCCCCCC
Confidence 66666544433
No 207
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.49 E-value=0.31 Score=45.61 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=52.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhc--CCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEE
Q 020954 69 RTLFVAGLPEDVKPREIYNLFRE--FPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYI 136 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~--~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v 136 (319)
.-|.++-|+..+-+|+++.||+. |-.+.+|.+-.+++ =||+|++..||+.|...|. .|+.|..
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 34678999999999999999985 77788888876554 6999999999999998887 6666544
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.46 E-value=0.49 Score=31.55 Aligned_cols=51 Identities=12% Similarity=0.305 Sum_probs=40.2
Q ss_pred CCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 242 TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 242 ~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
.++-++++..+..|+ ..+|... ..| =||.|.|..+|++|....||..+...
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d---~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDD---RTG-FYIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEec---CCE-EEEEECChHHHHHHHHhcCCCEEEEE
Confidence 467899999999994 4444432 222 58999999999999999999998854
No 209
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.18 E-value=0.75 Score=45.39 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=58.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEEcccC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAKSN 142 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~a~~~ 142 (319)
.+.++.|..-..+...|..+|+.||.|.+.+..++. ..|.|+|.+.+.|-.|+++++ .|-+.+|.+|+.-
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 455666777788888999999999999998887642 249999999999999999998 7777888888654
Q ss_pred C
Q 020954 143 S 143 (319)
Q Consensus 143 ~ 143 (319)
.
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 3
No 210
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.34 E-value=0.13 Score=45.13 Aligned_cols=72 Identities=14% Similarity=0.302 Sum_probs=53.4
Q ss_pred ceEEEeCCCCCCCHHHH---HHHhhcCCCccEEEEecCC----C-CCccEEEEEEcCHHHHHHHHHHcC----CCcEEEE
Q 020954 69 RTLFVAGLPEDVKPREI---YNLFREFPGYESSHLRSST----Q-NSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L---~~~F~~~G~v~~v~i~~~~----~-~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v 136 (319)
+-+||-+|+.++..+++ .+.|.+||.|..|.+..+. + ....-++|+|...++|..||...+ .|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 56789999988655554 3588999999888887642 1 111238999999999999999888 7777666
Q ss_pred EEcc
Q 020954 137 DLAK 140 (319)
Q Consensus 137 ~~a~ 140 (319)
.+..
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 6653
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.93 E-value=1.3 Score=29.50 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=34.0
Q ss_pred CCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 79 DVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 79 ~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
.++.+|++..++.|+- ..| +.+ +| -||.|.+..+|+++....+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~tG-----fYIvF~~~~Ea~rC~~~~~ 54 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDRTG-----FYIVFNDSKEAERCFRAED 54 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecCCE-----EEEEECChHHHHHHHHhcC
Confidence 5788999999999983 333 333 44 6899999999999998776
No 212
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.58 E-value=1.1 Score=36.52 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=39.6
Q ss_pred CHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEEccc
Q 020954 81 KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAKS 141 (319)
Q Consensus 81 t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~a~~ 141 (319)
..+.|+++|..|+.+........- .+ ..|.|.+.++|.+|...|+ .|..++|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF--rR--i~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF--RR--IRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT--TE--EEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC--CE--EEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999998777665432 23 8999999999999999877 788899998843
No 213
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.75 E-value=1.1 Score=31.79 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.4
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhh
Q 020954 230 PCATLFVANLGPTCTEQELTQVFS 253 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~ 253 (319)
..++|.|.|||..+.+++|++..+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 367899999999999999997643
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.44 E-value=2.5 Score=38.81 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=54.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCC-ccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
.+.|+|-.+|..++..||..|+..|-. |..++|++|.-.++=.++|.|.+.++|......+|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcC
Confidence 689999999999999999999987554 89999999755566668999999999999999999
No 215
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.19 E-value=0.16 Score=43.22 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=51.6
Q ss_pred EEEEcCCCCC------------CCHHHHHHHhhcCCCceEEEEee---------cCC-----CC---------EEEEEec
Q 020954 233 TLFVANLGPT------------CTEQELTQVFSKCPGFLKLKIQS---------TYG-----PP---------VAFVDFQ 277 (319)
Q Consensus 233 ~l~V~nLp~~------------~t~~~L~~~F~~fG~i~~v~i~~---------~~~-----~~---------~aFV~F~ 277 (319)
|||+.+||-. -+++.|+..|..||.|..|.|.- .+. .+ -|||+|.
T Consensus 151 ti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfm 230 (445)
T KOG2891|consen 151 TIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFM 230 (445)
T ss_pred ceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHH
Confidence 6777777732 46889999999999999988752 111 11 2456666
Q ss_pred ChHHHHHHHHHhCCCcccCCCCC----CeEEEEecCCC
Q 020954 278 DTVSSTAALNNLQGTILYSSPTS----DGIRLEFAKSR 311 (319)
Q Consensus 278 ~~~~A~~Al~~lnG~~i~~~~~G----~~i~V~~ak~~ 311 (319)
...--..|+.+|.|..+.-+..| -.++|+|.+++
T Consensus 231 eykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 231 EYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 66666667777777655332211 14788887765
No 216
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=88.06 E-value=0.55 Score=36.91 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=29.2
Q ss_pred EEEcCCCCC-CCHHHHHHHhhcCCCceEEEEeecC
Q 020954 234 LFVANLGPT-CTEQELTQVFSKCPGFLKLKIQSTY 267 (319)
Q Consensus 234 l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~~~ 267 (319)
|-|.|||.. .+++.|+.+-+.+|.+.++......
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 567899987 7889999999999999999987643
No 217
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.98 E-value=0.48 Score=43.54 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=52.1
Q ss_pred cceEEEeCCCCCC-CHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDV-KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~ 141 (319)
.+.|-+.-.+..+ +.++|...|.+||.|..|.+... .--|.|+|.+..+|-+|...-. .++.|+|-|-+.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc----hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3445555556553 56689999999999999998654 2239999999999966654333 899999999764
No 218
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.80 E-value=2 Score=36.96 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=36.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCc-cEEEEecCCCCCccEEEEEEcCHH
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGY-ESSHLRSSTQNSQPFAFAVFSDQQ 119 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~~~~g~afV~f~~~~ 119 (319)
..-||++||+.++...||+..+++-|.+ .++.. ....|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee----ecCCcceeEecCCcc
Confidence 4569999999999999999999987754 22322 223455999998764
No 219
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=83.67 E-value=9.8 Score=35.63 Aligned_cols=31 Identities=6% Similarity=0.042 Sum_probs=19.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEE
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESS 98 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v 98 (319)
.+.+-...|+..-..++|..-.++=|.+..+
T Consensus 481 l~~ve~t~~~~~dgR~~LmaqIRqG~~Lk~v 511 (569)
T KOG3671|consen 481 LKKVETTALSSGDGRDALMAQIRQGGQLKKV 511 (569)
T ss_pred ccceeeccCcCcccHHHHHHHHHhccccccc
Confidence 4566677777666777777777754444333
No 220
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=82.92 E-value=1.8 Score=44.49 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=29.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS 103 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~ 103 (319)
-.++++|--+-..+-.++|+++-+.++...++....|
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~~D 107 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTKVD 107 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchhhhhhhh
Confidence 3578888888889999999999999987665555443
No 221
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.50 E-value=11 Score=32.99 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=39.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 71 LFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 71 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
|-|-++++.- ..-|..+|++||.|.+...- .+-.+-.|.|.+..+|++||....
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~----~ngNwMhirYssr~~A~KALskng 253 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP----SNGNWMHIRYSSRTHAQKALSKNG 253 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecC----CCCceEEEEecchhHHHHhhhhcC
Confidence 3444666543 35688999999998776553 334579999999999999997654
No 222
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=80.95 E-value=8 Score=35.19 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=62.1
Q ss_pred CCCCCcCEEEEcCCCCC-CCHHHHHHHhhcC----CCceEEEEeecC---------------------------------
Q 020954 226 KNVTPCATLFVANLGPT-CTEQELTQVFSKC----PGFLKLKIQSTY--------------------------------- 267 (319)
Q Consensus 226 ~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~f----G~i~~v~i~~~~--------------------------------- 267 (319)
....++..|-|-||+++ +...+|..+|+.| |.|..|.|.+..
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~ 220 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGD 220 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCC
Confidence 33446778999999986 7888999888876 467777775310
Q ss_pred -------------------C-----------------CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 268 -------------------G-----------------PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 268 -------------------~-----------------~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
+ --||.|++++.+.+.....+++|..+... +..+-+.|--
T Consensus 221 dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s--an~~DLRfvP 296 (622)
T COG5638 221 DNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS--ANVLDLRFVP 296 (622)
T ss_pred ccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc--cceeeeeecC
Confidence 0 11899999999999999999999999877 5666666643
No 223
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=78.06 E-value=14 Score=25.10 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHhhcCCCc-----cEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 78 EDVKPREIYNLFREFPGY-----ESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 78 ~~~t~~~L~~~F~~~G~v-----~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
..++..+|..++..-+.| -.|.|. ..|+||+-.. +.|..++..|+ .|+.++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 458889999999877654 556665 4578998864 57888888888 9999998764
No 224
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.39 E-value=10 Score=36.11 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=56.9
Q ss_pred CCCcceEEEeCCCCC-CCHHHHHHHhhcC----CCccEEEEecC------------CCC---------------------
Q 020954 65 YDEVRTLFVAGLPED-VKPREIYNLFREF----PGYESSHLRSS------------TQN--------------------- 106 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~v~~v~i~~~------------~~~--------------------- 106 (319)
...+++|-|-||.++ |.-.||.-+|+.| |.|.+|.|... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 566799999999987 8999999999875 46888887431 111
Q ss_pred ----------------CccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEEc
Q 020954 107 ----------------SQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLA 139 (319)
Q Consensus 107 ----------------~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~a 139 (319)
.-=||.|+|.+++.|......+. .+..|-+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 01178999999999999998888 5555666554
No 225
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=76.63 E-value=8.7 Score=37.93 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=5.3
Q ss_pred ceEEEeCCCCCC
Q 020954 69 RTLFVAGLPEDV 80 (319)
Q Consensus 69 ~~l~V~nLp~~~ 80 (319)
+|+|-.-++..|
T Consensus 386 ~tvf~~~~De~I 397 (830)
T KOG1923|consen 386 GTVFHELNDEKI 397 (830)
T ss_pred cchhhhhhHHHH
Confidence 455544443333
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=76.02 E-value=13 Score=26.04 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=40.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CC-CceEEEEeecC-CCCEEEEEecChHHHHHHHHHh
Q 020954 234 LFVANLGPTCTEQELTQVFSK-CP-GFLKLKIQSTY-GPPVAFVDFQDTVSSTAALNNL 289 (319)
Q Consensus 234 l~V~nLp~~~t~~~L~~~F~~-fG-~i~~v~i~~~~-~~~~aFV~F~~~~~A~~Al~~l 289 (319)
-|+--++.+.+..+|++.++. || .|.+|+...-. +..-|||++...++|......|
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 444457889999999999987 55 66777765532 2238999999988888765543
No 227
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.42 E-value=9.2 Score=34.72 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=46.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCc-cEEEEecCCCCCccEEEEEEcCHHHHHHHHHH
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGY-ESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA 127 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 127 (319)
..+=-+.|-|.++|.....+||..+|+.|+.- -.|+++.++ .||..|.+...|..||..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 33445778899999998889999999999873 334444434 399999999999999854
No 228
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=73.57 E-value=18 Score=24.93 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=39.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CC-CceEEEEeecC-CCCEEEEEecChHHHHHHHHH
Q 020954 234 LFVANLGPTCTEQELTQVFSK-CP-GFLKLKIQSTY-GPPVAFVDFQDTVSSTAALNN 288 (319)
Q Consensus 234 l~V~nLp~~~t~~~L~~~F~~-fG-~i~~v~i~~~~-~~~~aFV~F~~~~~A~~Al~~ 288 (319)
-|+-.++.+.+..+|++.++. || .|.+|+...-. +-.-|||++..-++|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 455568889999999998887 44 56666655422 223899999988888765443
No 229
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=72.33 E-value=3.3 Score=33.28 Aligned_cols=74 Identities=11% Similarity=0.174 Sum_probs=52.4
Q ss_pred CEEEEcCCCCCCCH-----HHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 232 ATLFVANLGPTCTE-----QELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 232 ~~l~V~nLp~~~t~-----~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
+++++.+|+..+-. .....+|.+|-+..-.++++ +.++.-|.|.+.+.|..|...++++.|.+.. .++.=
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~---~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNGKN---ELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCCCc---eEEEE
Confidence 35777888765322 23346777777666666664 4447889999999999999999999999552 56666
Q ss_pred ecCC
Q 020954 307 FAKS 310 (319)
Q Consensus 307 ~ak~ 310 (319)
|+..
T Consensus 86 faQ~ 89 (193)
T KOG4019|consen 86 FAQP 89 (193)
T ss_pred EccC
Confidence 6653
No 230
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=72.29 E-value=4.7 Score=32.36 Aligned_cols=58 Identities=10% Similarity=0.073 Sum_probs=40.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CC--CCccEEEEEEcCHHHHHHHHHHcC
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQ--NSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~--~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
.|++|.. +.+...++|.++-+ |.+..|.++.. .+ ..+|-.||+|.+.++|..+++.-.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 4777776 33333334444444 78888888775 33 578899999999999999876544
No 231
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=69.54 E-value=15 Score=25.76 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=39.6
Q ss_pred EEeCCCCCCCHHHHHHHhhc-CCC-ccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHc
Q 020954 72 FVAGLPEDVKPREIYNLFRE-FPG-YESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYAL 128 (319)
Q Consensus 72 ~V~nLp~~~t~~~L~~~F~~-~G~-v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l 128 (319)
|+=..+.+++..+|++.++. ||- |.+|..... .+.-+ |||.+...++|......+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KK--A~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKK--AYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEE--EEEEeCCCCcHHHHHHhh
Confidence 34447789999999999987 664 566655443 34345 999999999988875443
No 232
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.27 E-value=9.6 Score=34.62 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=44.0
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCC-ceEEEEeecCCCCEEEEEecChHHHHHHHHH
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPG-FLKLKIQSTYGPPVAFVDFQDTVSSTAALNN 288 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~-i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~ 288 (319)
--++|-|.++|...-.+||...|+.|++ =-+|+.+.+. .||-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 3568999999999888999999999983 2233444322 699999999999999873
No 233
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=67.06 E-value=25 Score=33.13 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=16.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFRE 91 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~ 91 (319)
..++.++|-.-=+-.++...|..+|+.
T Consensus 303 ~r~~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 303 SRPCATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred ccccchhhhccCcceecHHHHHHHHHH
Confidence 444566665433344677778888874
No 234
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=66.10 E-value=25 Score=24.06 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhC
Q 020954 246 QELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQ 290 (319)
Q Consensus 246 ~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~ln 290 (319)
++|.+.+..+| +...++.-....++.|+-+.+.+.+.++.+.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777788898 556666643335689999999999998888763
No 235
>PHA01732 proline-rich protein
Probab=66.06 E-value=8.6 Score=26.73 Aligned_cols=9 Identities=11% Similarity=0.039 Sum_probs=4.0
Q ss_pred ccEEEEecC
Q 020954 95 YESSHLRSS 103 (319)
Q Consensus 95 v~~v~i~~~ 103 (319)
-.+++|..+
T Consensus 64 TasLrIpkq 72 (94)
T PHA01732 64 TASLRIPKQ 72 (94)
T ss_pred cceeEeecc
Confidence 344444443
No 236
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=65.59 E-value=1.5 Score=41.33 Aligned_cols=68 Identities=24% Similarity=0.334 Sum_probs=54.4
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
..++||++|+.++++-.+|..+|+.+-.+.++-+.... -..++.|+|.---.-..|+.+|||..+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 36789999999999999999999999888887765411 123889999877777778888888877654
No 237
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=64.65 E-value=8.4 Score=33.14 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=27.6
Q ss_pred cceEEEeCCCCC------------CCHHHHHHHhhcCCCccEEEEec
Q 020954 68 VRTLFVAGLPED------------VKPREIYNLFREFPGYESSHLRS 102 (319)
Q Consensus 68 ~~~l~V~nLp~~------------~t~~~L~~~F~~~G~v~~v~i~~ 102 (319)
..|||+.+||-. -+++-|+..|..||.|..|.|..
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 468898888743 35677999999999998887743
No 238
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.65 E-value=5.8 Score=29.77 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=30.0
Q ss_pred eEEEeCCCCC---------CCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHH-HHHHHHH
Q 020954 70 TLFVAGLPED---------VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQ-SALGAMY 126 (319)
Q Consensus 70 ~l~V~nLp~~---------~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~-~A~~A~~ 126 (319)
++.|-|++.. ++.++|.+.|+.|..++ ++...+.....|++.|+|..-- .-..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4556666432 45678999999999875 5555555567899999998653 3444543
No 239
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=64.07 E-value=26 Score=24.15 Aligned_cols=55 Identities=9% Similarity=0.063 Sum_probs=38.7
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CCC-ccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHH
Q 020954 71 LFVAGLPEDVKPREIYNLFRE-FPG-YESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYA 127 (319)
Q Consensus 71 l~V~nLp~~~t~~~L~~~F~~-~G~-v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~ 127 (319)
-|+=..+.+++..+|++.++. ||- |.+|....- .+.-+ |||.+...+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KK--A~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKK--AYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceE--EEEEECCCCcHHHHHHh
Confidence 345557889999999999987 663 556654433 33334 99999998888876443
No 240
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=63.76 E-value=11 Score=34.59 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=6.3
Q ss_pred CCcEEEEEEccc
Q 020954 130 KGSTLYIDLAKS 141 (319)
Q Consensus 130 ~g~~l~v~~a~~ 141 (319)
..|.|-|+|+.+
T Consensus 493 LsRRiaveysds 504 (518)
T KOG1830|consen 493 LSRRIAVEYSDS 504 (518)
T ss_pred HHHHHHHHhccC
Confidence 345555666543
No 241
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=63.42 E-value=29 Score=23.41 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=32.2
Q ss_pred CHHHHHHHhhcCC-CceEEEEeecCCCC---EEEEEec-ChHHHHHHHHHhCCC
Q 020954 244 TEQELTQVFSKCP-GFLKLKIQSTYGPP---VAFVDFQ-DTVSSTAALNNLQGT 292 (319)
Q Consensus 244 t~~~L~~~F~~fG-~i~~v~i~~~~~~~---~aFV~F~-~~~~A~~Al~~lnG~ 292 (319)
.--++.+.|+.+| .+.+|.-.+...+. .-||+++ +.++..+|++.|...
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~ 66 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRV 66 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHh
Confidence 3567778888887 66776655533333 5678887 555567788877654
No 242
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=63.21 E-value=8.1 Score=35.54 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=6.4
Q ss_pred CCHHHHHHHhhcCC
Q 020954 80 VKPREIYNLFREFP 93 (319)
Q Consensus 80 ~t~~~L~~~F~~~G 93 (319)
+++.|+++.-.-|+
T Consensus 347 i~~~e~kqsvyIyk 360 (480)
T KOG2675|consen 347 IDDAELKQSVYIYK 360 (480)
T ss_pred eeeccccceEEEEe
Confidence 44445555444444
No 243
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=62.63 E-value=11 Score=32.90 Aligned_cols=53 Identities=9% Similarity=0.112 Sum_probs=44.9
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC-----------CCCEEEEEecChHHHH
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-----------GPPVAFVDFQDTVSST 283 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~-----------~~~~aFV~F~~~~~A~ 283 (319)
++.|...|+..+++-..+...|-+||.|++|.++.+. ......+.|-+.+.+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 6789999999999999999999999999999999744 1237788898887654
No 244
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=62.48 E-value=40 Score=21.90 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=30.3
Q ss_pred CHHHHHHHhhcCC-CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCc
Q 020954 244 TEQELTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTI 293 (319)
Q Consensus 244 t~~~L~~~F~~fG-~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~ 293 (319)
.-.+|.++|.+.| .|.++.......+...-+.+++.+.|.++|+ -+|+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~-~~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALK-EAGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHH-HCCCE
Confidence 3467888898888 7888877654344444445566556666655 23443
No 245
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=62.44 E-value=20 Score=31.09 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=37.1
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChH
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTV 280 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~ 280 (319)
..+-|++.||+.++.-.||+..+.+-|.+- ..|.-....+-||++|-|..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCcc
Confidence 355699999999999999999998876432 23332345568999998754
No 246
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.99 E-value=1.4 Score=40.23 Aligned_cols=81 Identities=5% Similarity=-0.075 Sum_probs=60.6
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCC----EEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPP----VAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~----~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
+...|+..|+..+++++|.-+|..||.|..+.+.+..+.+ .+||+-. ..+|..+|+.+--..+.+. .++++
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~----~~r~~ 77 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFES----QDRKA 77 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhh----hhhhh
Confidence 3456788999999999999999999999888876522222 7777754 3567788887777777743 58888
Q ss_pred ecCCCCCCCC
Q 020954 307 FAKSRMGMPR 316 (319)
Q Consensus 307 ~ak~~~~~~~ 316 (319)
.++....+|-
T Consensus 78 ~~~~s~~~r~ 87 (572)
T KOG4365|consen 78 VSPSSSEKRS 87 (572)
T ss_pred cCchhhhhhh
Confidence 8887666553
No 247
>PRK11901 hypothetical protein; Reviewed
Probab=60.11 E-value=16 Score=32.46 Aligned_cols=58 Identities=17% Similarity=0.266 Sum_probs=39.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC--CCC-EEEE--EecChHHHHHHHHHhCC
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPP-VAFV--DFQDTVSSTAALNNLQG 291 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~--~~~-~aFV--~F~~~~~A~~Al~~lnG 291 (319)
...+|-|-.+ .+++.|..+..+++ +..+++.... ++. |..| .|.+.++|.+|+..|--
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 4567777665 45888888888875 4555555422 223 5544 68899999999998743
No 248
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.86 E-value=5.9 Score=29.72 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=25.7
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhhcCCCceEEEEeecC--CCCEEEEEecChHHHH
Q 020954 233 TLFVANLGPT---------CTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQDTVSST 283 (319)
Q Consensus 233 ~l~V~nLp~~---------~t~~~L~~~F~~fG~i~~v~i~~~~--~~~~aFV~F~~~~~A~ 283 (319)
++.|-|++.. ++.++|++.|+.|..++ |+..-+. ..++++|+|.+.-+.-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHH
Confidence 4667777543 46689999999998875 4444322 2459999998654433
No 249
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=59.26 E-value=23 Score=24.98 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=31.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFS 116 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~ 116 (319)
.-|||||++..+-|.-...+.+..+. -++.+........||+|-..-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~-G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGD-GSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCC-ccEEEEEccCCCCCEEEEEeC
Confidence 56899999998877665555555443 334444443448999998874
No 250
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=58.39 E-value=37 Score=21.10 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCC-CceEEEEeecC-CCCEEEEEecChHHHHHHH
Q 020954 245 EQELTQVFSKCP-GFLKLKIQSTY-GPPVAFVDFQDTVSSTAAL 286 (319)
Q Consensus 245 ~~~L~~~F~~fG-~i~~v~i~~~~-~~~~aFV~F~~~~~A~~Al 286 (319)
-.++.++|.+.| .|.++...... ......+.+++.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 356778888877 78888776643 3346677778877777765
No 251
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=56.76 E-value=6.6 Score=27.80 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhh
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFR 90 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~ 90 (319)
.+||.|.|||..+++++|++..+
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 49999999999999999987654
No 252
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=56.09 E-value=50 Score=21.00 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=42.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecCh----HHHHHHHHH
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDT----VSSTAALNN 288 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~----~~A~~Al~~ 288 (319)
|+.|.||.-.-....|++.+...-.|.++.+... .+.+-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~--~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE--TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT--TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC--CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5788899888888999999999999999988753 35788999754 455555553
No 253
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.85 E-value=25 Score=23.00 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=15.3
Q ss_pred HHHHHHhhcCCCccEEEEe
Q 020954 83 REIYNLFREFPGYESSHLR 101 (319)
Q Consensus 83 ~~L~~~F~~~G~v~~v~i~ 101 (319)
.+|+++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998666553
No 254
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=54.00 E-value=21 Score=25.74 Aligned_cols=50 Identities=10% Similarity=0.179 Sum_probs=31.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCH
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQ 118 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~ 118 (319)
..-||||+++..+-+.--..+-+.++. -++.+...+....||+|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCCCCCCcEEEecCCC
Confidence 356899999888876654455555554 33444444445569999887653
No 255
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.99 E-value=29 Score=22.73 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=16.2
Q ss_pred HHHHHHhhcCCCceEEEEe
Q 020954 246 QELTQVFSKCPGFLKLKIQ 264 (319)
Q Consensus 246 ~~L~~~F~~fG~i~~v~i~ 264 (319)
.+|+++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999998877664
No 256
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=52.52 E-value=17 Score=32.49 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=27.7
Q ss_pred EEEEEcCHHHHHHHHHHcC--CCcEEEEEEcccCCc
Q 020954 111 AFAVFSDQQSALGAMYALN--KGSTLYIDLAKSNSR 144 (319)
Q Consensus 111 afV~f~~~~~A~~A~~~l~--~g~~l~v~~a~~~~~ 144 (319)
|||+|++..+|+.|++.+. ..+.+++..|-+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCccc
Confidence 7999999999999998766 566678877766554
No 257
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=51.39 E-value=8.4 Score=35.01 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=49.7
Q ss_pred CcceEEEeCCCCCCCHH--------HHHHHhhc--CCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHH
Q 020954 67 EVRTLFVAGLPEDVKPR--------EIYNLFRE--FPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYA 127 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~--------~L~~~F~~--~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~ 127 (319)
..|.+|+.+....-+.+ ++...|.. .+.+..+.++++ ...++|..|++|...+.+++++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 35778998888776555 89999998 566777888887 567889999999999999999853
No 258
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=51.27 E-value=1.8e+02 Score=26.05 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=45.6
Q ss_pred ceEEEeCCCCCCCHHHHHH-----------HhhcCCC-ccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCc
Q 020954 69 RTLFVAGLPEDVKPREIYN-----------LFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGS 132 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~-----------~F~~~G~-v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~ 132 (319)
+-|.|| +.+--|..+|+- |.++||- .++|.|+.++..+. +.--+..--..||.-|- .|-
T Consensus 65 rAvLiG-INY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s~----~~~PT~~Nir~Al~wLV~~aq~gD 139 (362)
T KOG1546|consen 65 RAVLIG-INYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDESP----VRIPTGKNIRRALRWLVESAQPGD 139 (362)
T ss_pred eEEEEe-ecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCcc----cccCcHHHHHHHHHHHHhcCCCCC
Confidence 456664 888888887743 4567887 46677777644332 23334445555555444 788
Q ss_pred EEEEEEcccCCcc
Q 020954 133 TLYIDLAKSNSRS 145 (319)
Q Consensus 133 ~l~v~~a~~~~~~ 145 (319)
.|.+.|+-+..+.
T Consensus 140 ~LvfHYSGHGtr~ 152 (362)
T KOG1546|consen 140 SLVFHYSGHGTRQ 152 (362)
T ss_pred EEEEEecCCCCcC
Confidence 9999998776553
No 259
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=50.39 E-value=74 Score=21.20 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=31.9
Q ss_pred CHHHHHHHhhcCC-CceEEEEeecCCC-C--EEEEEecC---hHHHHHHHHHhCC
Q 020954 244 TEQELTQVFSKCP-GFLKLKIQSTYGP-P--VAFVDFQD---TVSSTAALNNLQG 291 (319)
Q Consensus 244 t~~~L~~~F~~fG-~i~~v~i~~~~~~-~--~aFV~F~~---~~~A~~Al~~lnG 291 (319)
.-.++.+.|+.+| .|.+|.-.+.... + .-||+++. ......+++.|..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4567888999997 6777765543332 2 67888874 5556677776654
No 260
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=50.12 E-value=64 Score=22.87 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCC-CceEEEEeecCCCCEEEEEecChHHHHHHHHHhC
Q 020954 245 EQELTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQ 290 (319)
Q Consensus 245 ~~~L~~~F~~fG-~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~ln 290 (319)
.+.++++++.+| +++++.+..+.-.-...+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 466778888887 7888888764444488889999998888765553
No 261
>PF14893 PNMA: PNMA
Probab=47.59 E-value=21 Score=32.15 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=42.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhc----CCCcc--EEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC-CCcEEEEEE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFRE----FPGYE--SSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-KGSTLYIDL 138 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~----~G~v~--~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~-~g~~l~v~~ 138 (319)
+..|.|.|.+||.++++++|++.+.. .|... .-.++++.+ .--|+|+|...-+-...=..+. .|..-+|-+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~--~~aalve~~e~~n~~~iP~~i~g~gg~W~Vv~ 93 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN--AKAALVEFAEDVNYSLIPREIPGKGGPWRVVF 93 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc--cceeeeecccccchhhCchhcCCCCCceEEEe
Confidence 34588999999999999998877654 55432 112222222 3358999975433222222222 566667655
Q ss_pred c
Q 020954 139 A 139 (319)
Q Consensus 139 a 139 (319)
-
T Consensus 94 ~ 94 (331)
T PF14893_consen 94 K 94 (331)
T ss_pred c
Confidence 4
No 262
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=46.63 E-value=76 Score=24.78 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=36.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CC-CceEEEEeec-CCCCEEEEEecChHHHHHHHH
Q 020954 234 LFVANLGPTCTEQELTQVFSK-CP-GFLKLKIQST-YGPPVAFVDFQDTVSSTAALN 287 (319)
Q Consensus 234 l~V~nLp~~~t~~~L~~~F~~-fG-~i~~v~i~~~-~~~~~aFV~F~~~~~A~~Al~ 287 (319)
-|+--++...+..+|++.++. |+ .|..|+...- .+..-|||++....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 444457888999999999987 44 5566655432 222389999987777654433
No 263
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=46.48 E-value=6 Score=35.33 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=42.0
Q ss_pred CHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCC
Q 020954 244 TEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGT 292 (319)
Q Consensus 244 t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~ 292 (319)
+...+.++..+.|+|..-.+.+--+.|.+||-.-..+++.++++.|.+.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3578888889999888877766667889999999999999999999876
No 264
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=46.43 E-value=21 Score=33.87 Aligned_cols=73 Identities=14% Similarity=0.221 Sum_probs=44.9
Q ss_pred EcCCCCCCCHHHHH-HHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecCCCCC
Q 020954 236 VANLGPTCTEQELT-QVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKSRMG 313 (319)
Q Consensus 236 V~nLp~~~t~~~L~-~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~~~~ 313 (319)
+.+++..+-...+. .++..++...+-.-.. +...+++++|++...+.+|+..++|....+. .+++..+.+...
T Consensus 30 ~e~~~~~~~q~~~~k~~~~~~~~~~s~tk~~-~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~----~~~~~~~~~~~~ 103 (534)
T KOG2187|consen 30 IEMIPTFIGQKQLNKVLLKILRDVKSKTKLP-KMPKYAYVTFETPSDAGKAINLVDGLLYKGF----ILRVQLGATEVG 103 (534)
T ss_pred eeccCchhhhhHHHhhhhhhcccccccCCCC-CCCCceEEEEeccchhhhHHHHHhhhhhhcc----hhhhhhcccccc
Confidence 44455544333333 3444343333321111 2234999999999999999999999998844 477776665543
No 265
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=45.32 E-value=16 Score=20.96 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHhhcCC
Q 020954 78 EDVKPREIYNLFREFP 93 (319)
Q Consensus 78 ~~~t~~~L~~~F~~~G 93 (319)
.++++++|+++|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4689999999998765
No 266
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=45.26 E-value=24 Score=38.83 Aligned_cols=6 Identities=0% Similarity=-0.036 Sum_probs=2.3
Q ss_pred hhcCCC
Q 020954 252 FSKCPG 257 (319)
Q Consensus 252 F~~fG~ 257 (319)
|++|.+
T Consensus 1964 ~QPYlE 1969 (2039)
T PRK15319 1964 IQPFAE 1969 (2039)
T ss_pred EEEEEE
Confidence 344433
No 267
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=45.23 E-value=35 Score=31.00 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=49.7
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCC-ceEEEEeec------CCCCEEEEEecChHHHHHHHHHhCCCcccCCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPG-FLKLKIQST------YGPPVAFVDFQDTVSSTAALNNLQGTILYSSP 298 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~-i~~v~i~~~------~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~ 298 (319)
-+.+.|.+||...++++|.+-...|-. +....+.+. .....|+|.|.+.++...=...++|+.+-+..
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~K 81 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNK 81 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCC
Confidence 346889999999999999988777653 222233321 11238999999999988888889998887665
No 268
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=44.02 E-value=58 Score=23.20 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHHHhhcCC-CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCC
Q 020954 238 NLGPTCTEQELTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGT 292 (319)
Q Consensus 238 nLp~~~t~~~L~~~F~~fG-~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~ 292 (319)
.+-..++...|..-|-.-| +-+-..+.+|-=+++|.|+|.+.+.+..|.+.|--.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lrel 74 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLREL 74 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHHHH
Confidence 3455677777776666555 233344555555679999999999999998876543
No 269
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=44.00 E-value=3.8 Score=38.73 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=46.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
..+||++|+.++++..+|..+++.+-.+..+.+... -.+...+.+|+|.---....|+..||
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 356899999999999999999999887777666544 33445568899986655555555555
No 270
>PF14893 PNMA: PNMA
Probab=43.49 E-value=29 Score=31.23 Aligned_cols=49 Identities=18% Similarity=0.349 Sum_probs=32.8
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhh----cCCCceEEE--EeecCCCCEEEEEecCh
Q 020954 231 CATLFVANLGPTCTEQELTQVFS----KCPGFLKLK--IQSTYGPPVAFVDFQDT 279 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~----~fG~i~~v~--i~~~~~~~~aFV~F~~~ 279 (319)
.+.|.|.+||.++++++|.+.+. ..|...-+. +.++.+..-|+|+|...
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 56799999999999999987755 455432221 22334445788888643
No 271
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=43.36 E-value=7.4 Score=25.99 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhC
Q 020954 246 QELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQ 290 (319)
Q Consensus 246 ~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~ln 290 (319)
++|++.|..+..+..+--. .+|..|.|.++|..++.++.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh------hhccCCCCHHHHHHHHHHhh
Confidence 6888888776554443222 49999999999998887654
No 272
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=43.00 E-value=86 Score=19.87 Aligned_cols=56 Identities=9% Similarity=0.182 Sum_probs=31.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCC-CceEEEEeecCCCCEE--EEEecChHHHHHHHHHhC
Q 020954 234 LFVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTYGPPVA--FVDFQDTVSSTAALNNLQ 290 (319)
Q Consensus 234 l~V~nLp~~~t~~~L~~~F~~fG-~i~~v~i~~~~~~~~a--FV~F~~~~~A~~Al~~ln 290 (319)
|+|..-...-.-.+|.++|+.+| .|.++........+++ .+++.+. .....++.|.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~-~~~~l~~~l~ 60 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP-VPEEVLEELK 60 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC-CCHHHHHHHH
Confidence 44444444445678889999987 7778877654312444 4444443 3334444443
No 273
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=42.97 E-value=1e+02 Score=20.81 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=32.0
Q ss_pred CHHHHHHHhhcCC-CceEEEEeecCC-CC--EEEEEecC---hHHHHHHHHHhCCC
Q 020954 244 TEQELTQVFSKCP-GFLKLKIQSTYG-PP--VAFVDFQD---TVSSTAALNNLQGT 292 (319)
Q Consensus 244 t~~~L~~~F~~fG-~i~~v~i~~~~~-~~--~aFV~F~~---~~~A~~Al~~lnG~ 292 (319)
.-.++.++|+++| .|.++...+... .. .-||+++. .++...+++.|...
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~ 69 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL 69 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 3567788999987 677877665322 22 55667763 55666777777653
No 274
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=41.44 E-value=25 Score=29.69 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHL 100 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 100 (319)
..+.++||+-|+|...|++.|.++.+.+|.+..+..
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 445689999999999999999999999997654433
No 275
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=39.90 E-value=47 Score=23.48 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=30.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhc-CCCccEEEEecCCCCCccEEEEEEcC
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFRE-FPGYESSHLRSSTQNSQPFAFAVFSD 117 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~~~~~~g~afV~f~~ 117 (319)
..-||||+++..+-+.--..+-+. .++ -++.+...+....||.|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEeCCCCCCcEEEecCC
Confidence 356899999888866543333333 232 3444444455577899887765
No 276
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=39.29 E-value=24 Score=36.95 Aligned_cols=11 Identities=0% Similarity=-0.004 Sum_probs=5.0
Q ss_pred CCCccEEEEec
Q 020954 92 FPGYESSHLRS 102 (319)
Q Consensus 92 ~G~v~~v~i~~ 102 (319)
+-.+.++++..
T Consensus 133 We~~~evkvly 143 (2365)
T COG5178 133 WEDVSEVKVLY 143 (2365)
T ss_pred HhhhheeeEEe
Confidence 33445555443
No 277
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=38.58 E-value=1e+02 Score=29.12 Aligned_cols=19 Identities=37% Similarity=0.558 Sum_probs=10.6
Q ss_pred CCCCC--CCCCCCCCCCCCCC
Q 020954 7 PPAGL--HYGYYQTPPPPPPP 25 (319)
Q Consensus 7 ~~~~~--~~~~~~~p~p~~~p 25 (319)
+|.+. |.+|++|+..+.||
T Consensus 441 Pp~~~~~p~~~~~ppg~p~pP 461 (554)
T KOG0119|consen 441 PPTSYAPPPQSGQPPGIPLPP 461 (554)
T ss_pred CCccCCCCCccCCCCCCCCCC
Confidence 44444 66777776444434
No 278
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=37.76 E-value=1.3e+02 Score=27.71 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=6.4
Q ss_pred CHHHHHHHhh
Q 020954 244 TEQELTQVFS 253 (319)
Q Consensus 244 t~~~L~~~F~ 253 (319)
|.+|.++.|-
T Consensus 471 tkDDaY~~FM 480 (487)
T KOG4672|consen 471 TKDDAYNAFM 480 (487)
T ss_pred cchHHHHHHH
Confidence 6666666663
No 279
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.69 E-value=1.1e+02 Score=19.47 Aligned_cols=50 Identities=6% Similarity=0.162 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHhhcCC-CceEEEEeecCCCCEEE--EEecChHHHHHHHHHhC
Q 020954 240 GPTCTEQELTQVFSKCP-GFLKLKIQSTYGPPVAF--VDFQDTVSSTAALNNLQ 290 (319)
Q Consensus 240 p~~~t~~~L~~~F~~fG-~i~~v~i~~~~~~~~aF--V~F~~~~~A~~Al~~ln 290 (319)
+..-.-.+|..+|+.+| .|.++........+.+. +...+. +...+++.|.
T Consensus 8 d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~-~~~~~i~~l~ 60 (71)
T cd04903 8 DKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP-IDEEVIEEIK 60 (71)
T ss_pred CCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC-CCHHHHHHHH
Confidence 33335677888898887 67777655422233443 444443 4444444443
No 280
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.33 E-value=7.6 Score=35.70 Aligned_cols=73 Identities=5% Similarity=-0.162 Sum_probs=55.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccCC
Q 020954 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (319)
Q Consensus 70 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (319)
..|+..|+...++++|.-+|..||.|..+.+... .+..+-.+||.-.. .+|..+|..+. .|..+++..+++..
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 4567889999999999999999999988877664 55556678887654 56677776665 77788887775443
No 281
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=37.32 E-value=1.1e+02 Score=21.91 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=34.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhh-------cCC-CceEEEEee---------cCCCC-EEEEEecChHHHHHHHHH
Q 020954 233 TLFVANLGPTCTEQELTQVFS-------KCP-GFLKLKIQS---------TYGPP-VAFVDFQDTVSSTAALNN 288 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~-------~fG-~i~~v~i~~---------~~~~~-~aFV~F~~~~~A~~Al~~ 288 (319)
++|| |.++++++++..+.. ..| .|.++...- ....| |.++.|.-..++.+.++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 5666 566777777665544 444 565555321 22334 899999988888877764
No 282
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.24 E-value=30 Score=29.20 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=29.4
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKI 263 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i 263 (319)
....+||+-|+|..+|++.|..+.++.|.+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 34678999999999999999999999996655443
No 283
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=35.40 E-value=1.1e+02 Score=23.96 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=34.5
Q ss_pred EeCCCCCCCHHHHHHHhhc-CCC-ccEEEEecC-CCCCccEEEEEEcCHHHHHHHH
Q 020954 73 VAGLPEDVKPREIYNLFRE-FPG-YESSHLRSS-TQNSQPFAFAVFSDQQSALGAM 125 (319)
Q Consensus 73 V~nLp~~~t~~~L~~~F~~-~G~-v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~ 125 (319)
+=-.+...+..+|++.++. |+- |..|..... .|.-+ |||.+....+|....
T Consensus 86 vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KK--A~V~L~~~~~aidva 139 (145)
T PTZ00191 86 VFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKK--AYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceE--EEEEECCCCcHHHHH
Confidence 3347789999999999986 664 555544433 44445 999998777655443
No 284
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=35.04 E-value=1.3e+02 Score=22.05 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHH
Q 020954 84 EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAM 125 (319)
Q Consensus 84 ~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~ 125 (319)
+|..+.+.+| |.+-.|..+.-.+.-||++++.|.+..-.+|
T Consensus 28 E~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 28 ELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHH
Confidence 5778888888 6555555555556789999999776666655
No 285
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=34.15 E-value=68 Score=21.51 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.9
Q ss_pred EEEEEecChHHHHHHHHHhCCCcc
Q 020954 271 VAFVDFQDTVSSTAALNNLQGTIL 294 (319)
Q Consensus 271 ~aFV~F~~~~~A~~Al~~lnG~~i 294 (319)
+.+|.|.+..+|.+|-+.|...-+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999998876644
No 286
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=33.23 E-value=53 Score=26.56 Aligned_cols=53 Identities=17% Similarity=-0.023 Sum_probs=36.3
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC-----CCCEEEEEecChHHHHHHHH
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-----GPPVAFVDFQDTVSSTAALN 287 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~-----~~~~aFV~F~~~~~A~~Al~ 287 (319)
.+++|.+ +.+..-++|.++-+ |.+..|.+.... .+|-.||+|.+.++|...++
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 5567776 33333444445444 788888887532 34588999999999998776
No 287
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=33.22 E-value=48 Score=21.79 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=24.3
Q ss_pred CHHHHHHHhhcCCCccEEEEecCCCCCccEEEE
Q 020954 81 KPREIYNLFREFPGYESSHLRSSTQNSQPFAFA 113 (319)
Q Consensus 81 t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV 113 (319)
-+.+|.+.|-+--.|.++.|...+.-.+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 345688888877889888887765556677776
No 288
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=32.82 E-value=96 Score=23.20 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=26.2
Q ss_pred CCCHHHHHHHhhc-CCC----ccEEEEecC--CCCCccEEEEEEcCHHHHHHH
Q 020954 79 DVKPREIYNLFRE-FPG----YESSHLRSS--TQNSQPFAFAVFSDQQSALGA 124 (319)
Q Consensus 79 ~~t~~~L~~~F~~-~G~----v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A 124 (319)
+++.+||++-+.+ |-. |.-..++.. +|++.|||.| |.+.+.|.+.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 5778888766554 332 222223333 7788888876 6666666543
No 289
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.06 E-value=1.9e+02 Score=20.51 Aligned_cols=47 Identities=6% Similarity=0.186 Sum_probs=29.0
Q ss_pred CHHHHHHHhhcCC-CceEEEEeecCCCC---EEEEEecC--hHHHHHHHHHhC
Q 020954 244 TEQELTQVFSKCP-GFLKLKIQSTYGPP---VAFVDFQD--TVSSTAALNNLQ 290 (319)
Q Consensus 244 t~~~L~~~F~~fG-~i~~v~i~~~~~~~---~aFV~F~~--~~~A~~Al~~ln 290 (319)
.--++.+.|+.+| .+.+|.-.+..... +-||+++- .+...+|++.|.
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~ 79 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLR 79 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHH
Confidence 3456778888887 66777665533222 56788873 334456666664
No 290
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.03 E-value=1.3e+02 Score=18.84 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=25.2
Q ss_pred HHHHHHHhhcCC-CceEEEEeecCCCCEE--EEEecChHHHHHHHH
Q 020954 245 EQELTQVFSKCP-GFLKLKIQSTYGPPVA--FVDFQDTVSSTAALN 287 (319)
Q Consensus 245 ~~~L~~~F~~fG-~i~~v~i~~~~~~~~a--FV~F~~~~~A~~Al~ 287 (319)
-.+|.++|.++| .|.++........+.+ .++.++.+.+.++++
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH
Confidence 356778888887 6777765543322334 445556555555555
No 291
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.52 E-value=1.6e+02 Score=21.98 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCC-CceEEEEeecCCCC---EEEEEec-ChHHHHHHHHHhCC
Q 020954 245 EQELTQVFSKCP-GFLKLKIQSTYGPP---VAFVDFQ-DTVSSTAALNNLQG 291 (319)
Q Consensus 245 ~~~L~~~F~~fG-~i~~v~i~~~~~~~---~aFV~F~-~~~~A~~Al~~lnG 291 (319)
--++.+.|+.+| .+.+|.-.+..... .-||+++ +.++..+||+.|..
T Consensus 55 L~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~ 106 (115)
T cd04930 55 LSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQ 106 (115)
T ss_pred HHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHH
Confidence 456667788876 66666655532222 5567766 44556677777754
No 292
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=31.46 E-value=8 Score=24.88 Aligned_cols=31 Identities=19% Similarity=0.054 Sum_probs=15.6
Q ss_pred CCCCEEEEEecC-hHHHHHHHHHhCCCcccCC
Q 020954 267 YGPPVAFVDFQD-TVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 267 ~~~~~aFV~F~~-~~~A~~Al~~lnG~~i~~~ 297 (319)
..++||||..++ .++.--.-..|++..-++.
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~ 37 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNGAMDGDK 37 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTTS-TT-E
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCCCCCCCE
Confidence 356799999987 3333333344555554443
No 293
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=31.21 E-value=49 Score=26.81 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=46.8
Q ss_pred ceEEEeCCCCCCCHH-----HHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCc-EEEEEE
Q 020954 69 RTLFVAGLPEDVKPR-----EIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGS-TLYIDL 138 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~-----~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~-~l~v~~ 138 (319)
.++.+.++...+-.+ ...++|.+|-+..-.++.+ +.+..-|.|.+.+.|..|...++ .|+ .++.-+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 457777777664322 3467777777655444442 34447789999999999998888 444 777777
Q ss_pred ccc
Q 020954 139 AKS 141 (319)
Q Consensus 139 a~~ 141 (319)
+..
T Consensus 87 aQ~ 89 (193)
T KOG4019|consen 87 AQP 89 (193)
T ss_pred ccC
Confidence 764
No 294
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.30 E-value=1.8e+02 Score=19.69 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=30.7
Q ss_pred CHHHHHHHhhcCC-CceEEEEeecCCCC---EEEEEec-ChHHHHHHHHHhCC
Q 020954 244 TEQELTQVFSKCP-GFLKLKIQSTYGPP---VAFVDFQ-DTVSSTAALNNLQG 291 (319)
Q Consensus 244 t~~~L~~~F~~fG-~i~~v~i~~~~~~~---~aFV~F~-~~~~A~~Al~~lnG 291 (319)
.-.++.+.|+.+| .+.++.-.+..... .-||+++ +.+....|++.|..
T Consensus 13 ~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 13 GLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 3466778888887 66776665533332 6678876 34456677777654
No 295
>CHL00030 rpl23 ribosomal protein L23
Probab=29.93 E-value=1.6e+02 Score=21.15 Aligned_cols=32 Identities=6% Similarity=0.142 Sum_probs=23.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CC-CceEEEEee
Q 020954 234 LFVANLGPTCTEQELTQVFSK-CP-GFLKLKIQS 265 (319)
Q Consensus 234 l~V~nLp~~~t~~~L~~~F~~-fG-~i~~v~i~~ 265 (319)
-|+--++.+.|..+|++.++. || .|.+|+...
T Consensus 21 ~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~ 54 (93)
T CHL00030 21 QYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHR 54 (93)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEE
Confidence 455567889999999999987 54 566666543
No 296
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=29.73 E-value=80 Score=27.37 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=22.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGY 95 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v 95 (319)
....|+|||++++..-|..++...-.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 456799999999999999999875544
No 297
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=29.59 E-value=1.7e+02 Score=21.38 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCceEEEEeecC--CCCEEEEEecChHHHHHHHH
Q 020954 245 EQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQDTVSSTAALN 287 (319)
Q Consensus 245 ~~~L~~~F~~fG~i~~v~i~~~~--~~~~aFV~F~~~~~A~~Al~ 287 (319)
+.+|.++.+..| |..-.|.-+. +--||++++.|.++..++|.
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 457778888885 4444554434 33399999997777666653
No 298
>PRK10905 cell division protein DamX; Validated
Probab=29.55 E-value=1.1e+02 Score=27.27 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=36.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC--CCC-EEEE--EecChHHHHHHHHHhC
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPP-VAFV--DFQDTVSSTAALNNLQ 290 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~--~~~-~aFV--~F~~~~~A~~Al~~ln 290 (319)
...+|-|..+ .+++.|+++-.++| +....+.... ++. |..+ .|.+.++|.+|+..|=
T Consensus 246 ~~YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 246 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CceEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCC
Confidence 3567777766 45688888888775 3333333322 222 3333 6889999999999874
No 299
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=29.34 E-value=2.6e+02 Score=21.31 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=43.7
Q ss_pred cCEEEEcCCCCC---CCHHHHHHHhhcCC-CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 231 CATLFVANLGPT---CTEQELTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 231 ~~~l~V~nLp~~---~t~~~L~~~F~~fG-~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
...|.|++.... .+-+.+.+....-| .++++....+ -..|.|.+.++-.+|.+.|....=.
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~----~~~irf~~~~~Ql~Ak~vL~~~L~~ 99 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND----SLLIRFDSPEQSAAAKEVLDRTLPH 99 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC----EEEEEECCHHHHHHHHHHHHHHcCC
Confidence 345777766443 56778888888887 5666555432 6899999999999999877655433
No 300
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=28.29 E-value=2e+02 Score=19.66 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=39.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-------CCCceEEEEeec--CCCCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 234 LFVANLGPTCTEQELTQVFSK-------CPGFLKLKIQST--YGPPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 234 l~V~nLp~~~t~~~L~~~F~~-------fG~i~~v~i~~~--~~~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
|..++||..+|.++|.++-.. +..|..++-.-. .++-|++.+=.|.++..++-+ -.|....
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~-~aG~p~d 72 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHAR-RAGLPAD 72 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHH-HcCCCcc
Confidence 567889998999998876544 445555554433 444466666567666666555 4477665
No 301
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=26.75 E-value=1.8e+02 Score=18.72 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=31.9
Q ss_pred EEcCCCCCCCHHHHHHHhhcCC-CceEEEEeecCCCCEEEEEe--cC--hHHHHHHHHHhCC
Q 020954 235 FVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTYGPPVAFVDF--QD--TVSSTAALNNLQG 291 (319)
Q Consensus 235 ~V~nLp~~~t~~~L~~~F~~fG-~i~~v~i~~~~~~~~aFV~F--~~--~~~A~~Al~~lnG 291 (319)
+|.+-...-.-.++.++|+++| .|.++........+.+++.| ++ ..+..++++.+.|
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~l~~~~~ 64 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPG 64 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCCCHHHHHHHHcCCC
Confidence 3444444445677889999998 67777665432333444444 33 2244555555554
No 302
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=24.70 E-value=2.2e+02 Score=19.06 Aligned_cols=44 Identities=23% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 83 REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 83 ~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
++|.+.+..+| +....+--.. .-++.|+.+.+.+.++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG--~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG--GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS--SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC--CCCeEEEEECCHHHHHHHHHHHH
Confidence 35677778888 5566664211 14678888889988888877653
No 303
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=23.66 E-value=2.4e+02 Score=27.14 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=38.2
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhh----cCCCceEEEEeec---CCCCEEEEEecChHHHHHHHHHhC
Q 020954 231 CATLFVANLGPTCTEQELTQVFS----KCPGFLKLKIQST---YGPPVAFVDFQDTVSSTAALNNLQ 290 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~----~fG~i~~v~i~~~---~~~~~aFV~F~~~~~A~~Al~~ln 290 (319)
...+.++.-..+.+.-+|..+|. .+|-|+++.+... ......++.|.+.++|..|+..+.
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 33444443222233456777766 6778888876541 122367889999999999998764
No 304
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=23.64 E-value=3.2e+02 Score=25.35 Aligned_cols=6 Identities=17% Similarity=0.157 Sum_probs=2.8
Q ss_pred EEEEEE
Q 020954 133 TLYIDL 138 (319)
Q Consensus 133 ~l~v~~ 138 (319)
.|+|.+
T Consensus 437 ~lRVRR 442 (487)
T KOG4672|consen 437 QLRVRR 442 (487)
T ss_pred heeeec
Confidence 355544
No 305
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=23.34 E-value=38 Score=30.41 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC-CCc
Q 020954 82 PREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-KGS 132 (319)
Q Consensus 82 ~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~-~g~ 132 (319)
...+.+++.+.|.|..-.+.+.. +-|.+||..-..+++.++++.|. .|.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF--NmGvG~v~iv~~e~~~~~~~~l~~~g~ 324 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF--NMGVGMVLIVPEEDAEKALALLKEQGE 324 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh--cCccceEEEEcHHHHHHHHHHHHhcCC
Confidence 45688888889988655444432 35778999999999999999998 443
No 306
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=23.20 E-value=2.9e+02 Score=21.63 Aligned_cols=34 Identities=6% Similarity=0.025 Sum_probs=25.6
Q ss_pred ceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCC
Q 020954 258 FLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGT 292 (319)
Q Consensus 258 i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~ 292 (319)
|.+|-+.. .-+||.||+....+++..++..+.|.
T Consensus 36 i~~i~vp~-~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPP-ELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccC-CCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 55555444 56789999999889999999877653
No 307
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=22.68 E-value=2.4e+02 Score=19.04 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=35.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
.||+.++ .+++ -..+||.|..+. +...|+ |-|-|.++++..++.|....+-
T Consensus 5 iVyl~~~------k~~r-~L~kfG~i~Y~S----kk~kYv-vlYvn~~~~e~~~~kl~~l~fV 55 (71)
T PF09902_consen 5 IVYLYSL------KDAR-QLRKFGDIHYVS----KKMKYV-VLYVNEEDVEEIIEKLKKLKFV 55 (71)
T ss_pred EEEEech------HhHH-hHhhcccEEEEE----CCccEE-EEEECHHHHHHHHHHHhcCCCe
Confidence 4666654 2333 346899998865 233355 4578999999999999887776
No 308
>PF15063 TC1: Thyroid cancer protein 1
Probab=22.61 E-value=85 Score=21.41 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=34.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCc---cEEEEecCCCCCccEEEEEEcCHHHHHHHHHHc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGY---ESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL 128 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v---~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l 128 (319)
.|+--+.||=.+++.+.|..||..-|.. +..+++. -.-.|.++..+||..|
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~----------~~~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDKKAEERARIIW----------ECAQDPEEKARALMAL 78 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHH----------hhCCCHHHHHHHHHhc
Confidence 3555688999999999999999999974 4444543 1223555555665544
No 309
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=22.47 E-value=1.4e+02 Score=20.70 Aligned_cols=38 Identities=5% Similarity=-0.011 Sum_probs=25.4
Q ss_pred CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 257 GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 257 ~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
.|.++-. .+.-+||-||+=.+..+...|++.+-+....
T Consensus 33 ~I~Si~~-~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~~ 70 (84)
T PF03439_consen 33 NIYSIFA-PDSLKGYIYVEAERESDVKEAIRGIRHIRGS 70 (84)
T ss_dssp ---EEEE--TTSTSEEEEEESSHHHHHHHHTT-TTEEEE
T ss_pred ceEEEEE-eCCCceEEEEEeCCHHHHHHHHhcccceeec
Confidence 4444433 3467889999999999999998877665443
No 310
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=22.31 E-value=4e+02 Score=22.72 Aligned_cols=11 Identities=9% Similarity=-0.064 Sum_probs=5.6
Q ss_pred CCCCCCHHHHH
Q 020954 239 LGPTCTEQELT 249 (319)
Q Consensus 239 Lp~~~t~~~L~ 249 (319)
-+.+++-||-+
T Consensus 318 pdedisleerr 328 (341)
T KOG2893|consen 318 PDEDISLEERR 328 (341)
T ss_pred CcccccHHHHh
Confidence 44555555544
No 311
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=21.67 E-value=1.3e+02 Score=24.13 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhhcCCCceEEEEeecCCCCEE-EEEec
Q 020954 241 PTCTEQELTQVFSKCPGFLKLKIQSTYGPPVA-FVDFQ 277 (319)
Q Consensus 241 ~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~a-FV~F~ 277 (319)
..+|-++|+++|.+|+.=..+.-+ .+..|. .|.|+
T Consensus 107 hgcT~e~I~~~F~~ys~~~~~e~~--~~~eFD~~i~Fe 142 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSDNVHCEEM--DNGEFDYLIYFE 142 (175)
T ss_pred CCcCHHHHHHHHHHhcCCeEEEee--cCCCCCEEEEec
Confidence 579999999999999974444333 233444 34555
No 312
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=21.58 E-value=1.9e+02 Score=19.28 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=36.8
Q ss_pred HHHHHHhhcCCC-ccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC-CCcEEEEEEccc
Q 020954 83 REIYNLFREFPG-YESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN-KGSTLYIDLAKS 141 (319)
Q Consensus 83 ~~L~~~F~~~G~-v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~-~g~~l~v~~a~~ 141 (319)
++|.+-|...|- |..+.-+.. ++.....-||+.....+..+++..-. ++..+.|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeehHhhCCeEEEEecCCC
Confidence 467777887776 555544443 45555677888877655444442222 888888877653
No 313
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=21.22 E-value=1.5e+02 Score=23.36 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=33.8
Q ss_pred EEEeCCCC-CCCHHHHHHHhhc-CCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 71 LFVAGLPE-DVKPREIYNLFRE-FPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 71 l~V~nLp~-~~t~~~L~~~F~~-~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
+|+|+|.. ..+-++|+..... |+... -.++..+....+.+.|+|.-..+|..-+..|-
T Consensus 7 a~~G~l~~~~~~ld~i~~~l~~L~~~~~-~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA 66 (149)
T PF13820_consen 7 AYIGGLRMFQYKLDDIKNWLASLYKPRI-SDLKVRKVEPWNSVRVTFSIPREAATRLRQLA 66 (149)
T ss_pred EEECChhhhHHHHHHHHHHHHHHHhccc-ccceeeccccCceEEEEEechHHHHHHHHHHh
Confidence 57788861 1333445555543 33322 22333333445679999999988887776665
No 314
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=21.22 E-value=3.1e+02 Score=19.36 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCC-ccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 82 PREIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 82 ~~~L~~~F~~~G~-v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
.+.++++++.+|. ++++.+.. |..-.+..+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~--G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL--GEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec--CCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 3457888888775 66665553 6667778899999999888776666
No 315
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=20.36 E-value=1.1e+02 Score=22.02 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=16.6
Q ss_pred EEEEEecChHHHHHHHHHh
Q 020954 271 VAFVDFQDTVSSTAALNNL 289 (319)
Q Consensus 271 ~aFV~F~~~~~A~~Al~~l 289 (319)
|+.++|.+.+++..|...+
T Consensus 68 FsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 68 FSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEcCchhHHHHHHHHh
Confidence 9999999999988887755
Done!