Query 020954
Match_columns 319
No_of_seqs 391 out of 2015
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 10:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 5.7E-37 1.9E-41 258.0 16.8 160 67-311 14-181 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 1.1E-34 3.7E-39 234.0 19.7 157 69-310 1-166 (166)
3 3pgw_A U1-A; protein-RNA compl 100.0 8.1E-34 2.8E-38 248.9 25.9 241 65-310 6-282 (282)
4 1l3k_A Heterogeneous nuclear r 100.0 2E-34 6.9E-39 239.0 19.3 170 65-316 10-188 (196)
5 1b7f_A Protein (SXL-lethal pro 100.0 4.2E-34 1.4E-38 231.2 20.2 157 67-308 2-168 (168)
6 3nmr_A Cugbp ELAV-like family 100.0 3.1E-34 1.1E-38 233.5 18.8 160 67-309 2-175 (175)
7 1fxl_A Paraneoplastic encephal 100.0 1.6E-33 5.6E-38 227.4 21.0 156 68-308 2-167 (167)
8 3tyt_A Heterogeneous nuclear r 100.0 6.5E-34 2.2E-38 237.2 17.5 193 67-308 3-204 (205)
9 2adc_A Polypyrimidine tract-bi 100.0 3.6E-33 1.2E-37 237.4 22.1 189 67-311 33-228 (229)
10 2qfj_A FBP-interacting repress 100.0 5.1E-34 1.7E-38 240.2 16.6 174 66-315 26-209 (216)
11 2cjk_A Nuclear polyadenylated 100.0 2.5E-34 8.4E-39 232.5 13.3 157 67-311 2-166 (167)
12 1qm9_A Polypyrimidine tract-bi 100.0 1.2E-32 4E-37 229.0 21.3 188 68-311 3-197 (198)
13 1fje_B Nucleolin RBD12, protei 100.0 8.7E-34 3E-38 231.1 12.7 160 65-311 10-174 (175)
14 2yh0_A Splicing factor U2AF 65 100.0 7.8E-32 2.7E-36 223.8 20.5 175 67-313 3-196 (198)
15 2g4b_A Splicing factor U2AF 65 100.0 9E-32 3.1E-36 218.4 17.6 151 67-309 3-172 (172)
16 3smz_A Protein raver-1, ribonu 100.0 2.8E-31 9.5E-36 233.0 19.6 163 68-314 95-267 (284)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.2E-31 4E-36 236.3 16.8 164 67-311 116-291 (292)
18 3sde_A Paraspeckle component 1 100.0 1.5E-30 5.3E-35 225.4 20.3 154 65-312 19-180 (261)
19 2ghp_A U4/U6 snRNA-associated 100.0 8.6E-31 2.9E-35 230.7 17.2 154 65-313 38-199 (292)
20 3smz_A Protein raver-1, ribonu 100.0 7.4E-30 2.5E-34 223.9 20.2 149 67-313 21-177 (284)
21 2kn4_A Immunoglobulin G-bindin 99.9 2.5E-24 8.6E-29 172.2 14.4 83 230-316 69-155 (158)
22 2i2y_A Fusion protein consists 99.9 3E-23 1E-27 164.4 13.8 140 99-311 4-148 (150)
23 4f25_A Polyadenylate-binding p 99.9 1.7E-23 5.7E-28 158.1 8.9 75 68-142 5-83 (115)
24 3r27_A HnRNP L, heterogeneous 99.8 4.4E-21 1.5E-25 139.2 9.8 79 228-312 18-98 (100)
25 1sjq_A Polypyrimidine tract-bi 99.8 3.6E-21 1.2E-25 141.1 9.2 82 229-316 14-97 (105)
26 4fxv_A ELAV-like protein 1; RN 99.8 7.1E-21 2.4E-25 139.5 10.4 77 230-310 18-98 (99)
27 2cq1_A PTB-like protein L; RRM 99.8 2.5E-20 8.6E-25 136.6 12.8 83 228-316 12-96 (101)
28 1wex_A Hypothetical protein (r 99.8 2.5E-20 8.6E-25 137.5 11.6 82 228-315 12-95 (104)
29 2ad9_A Polypyrimidine tract-bi 99.8 2.3E-20 7.7E-25 140.3 10.5 82 229-316 29-112 (119)
30 4fxv_A ELAV-like protein 1; RN 99.8 2.5E-20 8.5E-25 136.6 9.9 74 68-141 19-98 (99)
31 4f25_A Polyadenylate-binding p 99.8 2.1E-20 7E-25 141.1 9.4 79 231-313 5-85 (115)
32 2d9p_A Polyadenylate-binding p 99.8 9.9E-20 3.4E-24 134.6 11.9 84 229-316 13-98 (103)
33 2cq3_A RNA-binding protein 9; 99.8 2.3E-19 7.8E-24 132.6 13.4 84 228-315 12-97 (103)
34 1x4c_A Splicing factor, argini 99.8 1.5E-19 5.2E-24 134.8 12.4 85 230-317 14-99 (108)
35 1whw_A Hypothetical protein ri 99.8 1.3E-19 4.5E-24 132.9 11.9 83 229-315 6-92 (99)
36 2dnh_A Bruno-like 5, RNA bindi 99.8 1.9E-19 6.7E-24 133.5 12.7 87 229-316 13-102 (105)
37 1x4a_A Splicing factor, argini 99.8 2.1E-19 7.2E-24 134.2 12.8 83 229-315 20-103 (109)
38 2wbr_A GW182, gawky, LD47780P; 99.8 3.7E-20 1.3E-24 129.5 8.0 73 231-309 7-79 (89)
39 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.1E-19 7.1E-24 132.8 12.3 85 228-316 12-98 (103)
40 2jvr_A Nucleolar protein 3; RN 99.8 3.3E-20 1.1E-24 138.3 7.9 82 230-315 27-109 (111)
41 1x5s_A Cold-inducible RNA-bind 99.8 1.4E-19 4.8E-24 133.5 11.3 84 229-316 10-97 (102)
42 1x5u_A Splicing factor 3B subu 99.8 2.6E-19 8.9E-24 132.8 12.8 84 228-315 12-99 (105)
43 2dnz_A Probable RNA-binding pr 99.8 2.5E-19 8.5E-24 130.4 12.4 82 230-315 4-89 (95)
44 1x4f_A Matrin 3; structural ge 99.8 9.9E-20 3.4E-24 135.3 10.3 80 228-313 22-104 (112)
45 2lea_A Serine/arginine-rich sp 99.8 2.5E-20 8.6E-25 144.6 7.3 84 230-317 46-133 (135)
46 2dgs_A DAZ-associated protein 99.8 3E-19 1E-23 131.0 12.8 83 229-316 8-94 (99)
47 3s8s_A Histone-lysine N-methyl 99.8 1.4E-19 4.8E-24 135.1 11.1 79 229-311 4-86 (110)
48 2lkz_A RNA-binding protein 5; 99.8 3.3E-20 1.1E-24 134.5 7.4 76 231-310 9-94 (95)
49 1why_A Hypothetical protein ri 99.8 2.9E-19 1E-23 130.5 12.6 80 229-312 15-94 (97)
50 2dnm_A SRP46 splicing factor; 99.8 1.8E-19 6.3E-24 133.1 11.6 83 229-315 11-97 (103)
51 2lkz_A RNA-binding protein 5; 99.8 5.7E-20 1.9E-24 133.3 8.6 77 65-141 6-94 (95)
52 2dnq_A RNA-binding protein 4B; 99.8 2.1E-19 7E-24 129.5 11.6 79 229-315 6-84 (90)
53 2cph_A RNA binding motif prote 99.8 3.1E-19 1.1E-23 132.8 12.8 84 228-315 12-101 (107)
54 1x4d_A Matrin 3; structural ge 99.8 7.4E-20 2.5E-24 134.0 9.1 77 230-312 14-93 (102)
55 2e5j_A Methenyltetrahydrofolat 99.8 2.1E-19 7.2E-24 131.3 11.5 79 229-312 17-95 (97)
56 2fy1_A RNA-binding motif prote 99.8 2E-19 6.9E-24 135.8 11.7 82 230-315 6-90 (116)
57 2dgu_A Heterogeneous nuclear r 99.8 1.7E-19 5.7E-24 133.4 10.7 81 229-317 9-89 (103)
58 2dgx_A KIAA0430 protein; RRM d 99.8 1.6E-19 5.4E-24 131.7 10.5 81 230-314 8-93 (96)
59 2e5h_A Zinc finger CCHC-type a 99.8 2.5E-19 8.5E-24 130.1 11.2 77 229-309 14-94 (94)
60 2lxi_A RNA-binding protein 10; 99.8 3.2E-20 1.1E-24 133.9 6.2 79 231-313 1-85 (91)
61 4a8x_A RNA-binding protein wit 99.8 1.6E-19 5.5E-24 129.4 9.9 78 231-312 4-86 (88)
62 2x1f_A MRNA 3'-END-processing 99.8 1.7E-19 5.9E-24 131.5 10.2 79 230-312 1-83 (96)
63 2lxi_A RNA-binding protein 10; 99.8 5.4E-20 1.8E-24 132.7 7.3 75 68-142 1-83 (91)
64 1x4h_A RNA-binding protein 28; 99.8 5E-19 1.7E-23 132.6 12.9 85 228-316 12-106 (111)
65 2a3j_A U1 small nuclear ribonu 99.8 7.7E-20 2.6E-24 139.7 8.5 82 228-313 26-112 (127)
66 2jvo_A Nucleolar protein 3; nu 99.8 1.6E-19 5.5E-24 134.5 10.0 80 227-314 27-106 (108)
67 2dgo_A Cytotoxic granule-assoc 99.8 4.9E-19 1.7E-23 133.5 12.8 85 228-316 12-100 (115)
68 3s8s_A Histone-lysine N-methyl 99.8 1.9E-19 6.6E-24 134.4 10.3 75 68-142 6-86 (110)
69 2cpf_A RNA binding motif prote 99.8 1.5E-19 5.2E-24 132.3 9.6 82 230-315 4-92 (98)
70 2cpj_A Non-POU domain-containi 99.8 4.1E-19 1.4E-23 130.3 11.8 81 228-314 12-92 (99)
71 1sjr_A Polypyrimidine tract-bi 99.8 2.7E-19 9.4E-24 141.1 11.5 81 231-313 46-126 (164)
72 2cpz_A CUG triplet repeat RNA- 99.8 4.9E-19 1.7E-23 133.6 12.4 84 228-315 22-109 (115)
73 2err_A Ataxin-2-binding protei 99.8 2E-19 6.8E-24 134.3 10.0 82 227-312 25-108 (109)
74 2cq0_A Eukaryotic translation 99.8 5.8E-19 2E-23 130.4 12.2 84 228-315 12-99 (103)
75 2do4_A Squamous cell carcinoma 99.8 9.6E-19 3.3E-23 128.5 13.1 82 228-313 14-98 (100)
76 1x4g_A Nucleolysin TIAR; struc 99.8 2.8E-19 9.7E-24 133.5 10.4 82 229-316 23-104 (109)
77 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-18 4.6E-23 135.7 14.7 85 228-316 39-127 (139)
78 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.6E-19 8.8E-24 128.1 9.7 78 230-311 5-86 (87)
79 2dgp_A Bruno-like 4, RNA bindi 99.8 3.7E-19 1.3E-23 132.2 10.9 87 228-315 10-100 (106)
80 2khc_A Testis-specific RNP-typ 99.8 7.1E-19 2.4E-23 133.3 12.5 79 227-309 36-118 (118)
81 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.4E-19 1.2E-23 126.9 9.9 77 229-309 5-85 (85)
82 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.4E-19 1.2E-23 131.4 10.3 85 229-317 10-98 (102)
83 2hvz_A Splicing factor, argini 99.8 1.8E-19 6.2E-24 132.7 8.6 78 232-314 1-78 (101)
84 2cqc_A Arginine/serine-rich sp 99.8 6.4E-19 2.2E-23 128.2 11.5 79 228-310 12-94 (95)
85 2diu_A KIAA0430 protein; struc 99.8 3.9E-19 1.3E-23 125.5 9.8 74 230-313 7-86 (96)
86 1wf1_A RNA-binding protein RAL 99.8 7.6E-19 2.6E-23 131.4 12.0 79 229-315 25-104 (110)
87 1x5t_A Splicing factor 3B subu 99.8 3E-19 1E-23 130.2 9.5 83 230-316 4-91 (96)
88 3md1_A Nuclear and cytoplasmic 99.8 5.4E-19 1.9E-23 125.2 10.6 77 232-312 2-82 (83)
89 1wi8_A EIF-4B, eukaryotic tran 99.8 6.5E-19 2.2E-23 130.4 11.5 82 229-316 13-99 (104)
90 2dgt_A RNA-binding protein 30; 99.8 6.9E-19 2.4E-23 127.2 11.4 79 229-315 8-86 (92)
91 2la4_A Nuclear and cytoplasmic 99.8 2E-19 6.9E-24 132.4 8.7 77 229-311 25-101 (101)
92 2kxn_B Transformer-2 protein h 99.8 4.3E-19 1.5E-23 136.4 10.9 81 228-312 43-127 (129)
93 2jrs_A RNA-binding protein 39; 99.8 1E-18 3.4E-23 130.2 12.4 83 226-312 21-107 (108)
94 2ytc_A PRE-mRNA-splicing facto 99.8 3.8E-19 1.3E-23 126.6 9.7 76 228-309 9-85 (85)
95 1p27_B RNA-binding protein 8A; 99.8 3.8E-19 1.3E-23 132.2 10.1 80 229-312 21-104 (106)
96 2cpx_A Hypothetical protein FL 99.8 6.3E-19 2.2E-23 132.9 11.3 84 229-316 23-110 (115)
97 2dnp_A RNA-binding protein 14; 99.8 4.6E-19 1.6E-23 127.6 10.1 79 229-315 7-85 (90)
98 2dgv_A HnRNP M, heterogeneous 99.8 5.9E-19 2E-23 127.6 10.7 82 229-314 6-89 (92)
99 2cpe_A RNA-binding protein EWS 99.8 7.4E-19 2.5E-23 132.1 11.3 85 227-315 11-107 (113)
100 2kvi_A Nuclear polyadenylated 99.8 4E-19 1.4E-23 129.6 9.4 78 229-314 8-86 (96)
101 2cpd_A Apobec-1 stimulating pr 99.8 1.5E-18 5.1E-23 127.3 12.5 80 228-315 12-93 (99)
102 2khc_A Testis-specific RNP-typ 99.8 2E-18 7E-23 130.7 13.6 75 66-140 38-118 (118)
103 3ex7_B RNA-binding protein 8A; 99.8 4.9E-19 1.7E-23 135.8 10.3 85 228-316 19-107 (126)
104 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.9E-18 6.6E-23 127.6 13.1 79 65-143 12-94 (103)
105 2xnq_A Nuclear polyadenylated 99.8 6.6E-19 2.3E-23 128.6 10.3 76 228-311 19-95 (97)
106 2la6_A RNA-binding protein FUS 99.8 1.5E-18 5.1E-23 127.2 12.2 78 228-309 10-99 (99)
107 2cqd_A RNA-binding region cont 99.8 1.4E-18 4.7E-23 131.3 12.1 84 227-315 13-100 (116)
108 2err_A Ataxin-2-binding protei 99.8 6E-19 2E-23 131.7 9.9 77 66-142 27-107 (109)
109 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.4E-19 1.8E-23 142.0 10.2 84 229-316 70-157 (165)
110 1whx_A Hypothetical protein ri 99.8 6E-19 2.1E-23 132.1 9.8 79 230-314 9-87 (111)
111 1nu4_A U1A RNA binding domain; 99.8 1.2E-19 4.2E-24 132.5 5.6 82 229-314 6-92 (97)
112 2cpi_A CCR4-NOT transcription 99.8 4.4E-19 1.5E-23 132.9 8.8 79 230-312 14-102 (111)
113 1whw_A Hypothetical protein ri 99.8 2.6E-18 9E-23 125.9 12.7 79 65-143 5-89 (99)
114 2fc9_A NCL protein; structure 99.8 7.4E-19 2.5E-23 129.4 9.7 84 228-315 12-95 (101)
115 1u6f_A Tcubp1, RNA-binding pro 99.8 3.8E-18 1.3E-22 133.1 14.2 79 65-143 39-123 (139)
116 1oo0_B CG8781-PA, drosophila Y 99.8 8E-19 2.7E-23 131.3 9.7 83 228-314 23-109 (110)
117 3r27_A HnRNP L, heterogeneous 99.8 1.4E-18 4.6E-23 126.1 10.5 72 67-142 20-97 (100)
118 2cqh_A IGF-II mRNA-binding pro 99.8 4.4E-19 1.5E-23 128.5 8.0 81 230-317 7-89 (93)
119 2cq3_A RNA-binding protein 9; 99.8 4.7E-18 1.6E-22 125.5 13.6 79 65-143 12-94 (103)
120 2ywk_A Putative RNA-binding pr 99.8 1.2E-18 4.1E-23 126.7 10.2 79 228-310 13-94 (95)
121 3zzy_A Polypyrimidine tract-bi 99.8 1.2E-18 4.1E-23 132.5 10.5 80 231-313 28-108 (130)
122 2e5i_A Heterogeneous nuclear r 99.8 5.1E-18 1.7E-22 128.5 13.9 79 230-312 22-103 (124)
123 2e5h_A Zinc finger CCHC-type a 99.8 3.1E-18 1E-22 124.3 12.1 74 67-140 15-94 (94)
124 2rs2_A Musashi-1, RNA-binding 99.8 1.3E-18 4.5E-23 129.8 10.3 80 64-143 21-105 (109)
125 1sjq_A Polypyrimidine tract-bi 99.8 6.4E-19 2.2E-23 129.1 8.4 73 67-143 15-93 (105)
126 3ulh_A THO complex subunit 4; 99.8 8.7E-19 3E-23 130.4 9.3 78 229-310 27-107 (107)
127 1x5u_A Splicing factor 3B subu 99.8 2.8E-18 9.6E-23 127.2 11.9 78 66-143 13-96 (105)
128 2do4_A Squamous cell carcinoma 99.8 3.9E-18 1.3E-22 125.2 12.3 77 66-142 15-96 (100)
129 2dhg_A TRNA selenocysteine ass 99.8 1.6E-18 5.5E-23 128.2 10.4 84 229-316 7-95 (104)
130 2dgs_A DAZ-associated protein 99.8 3.6E-18 1.2E-22 125.2 12.1 78 65-143 7-90 (99)
131 2cph_A RNA binding motif prote 99.8 3.6E-18 1.2E-22 127.0 12.3 79 65-143 12-98 (107)
132 2dnz_A Probable RNA-binding pr 99.8 2.5E-18 8.5E-23 125.0 11.1 77 67-143 4-86 (95)
133 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-18 4.1E-23 124.6 9.1 76 67-142 5-86 (87)
134 3lqv_A PRE-mRNA branch site pr 99.8 1.3E-18 4.4E-23 131.2 9.7 81 230-314 7-88 (115)
135 2dnh_A Bruno-like 5, RNA bindi 99.8 3.7E-18 1.3E-22 126.5 12.0 78 66-143 13-98 (105)
136 1s79_A Lupus LA protein; RRM, 99.8 3E-19 1E-23 131.7 6.0 77 229-310 9-88 (103)
137 2hvz_A Splicing factor, argini 99.8 1.3E-18 4.3E-23 128.1 9.3 72 69-143 1-76 (101)
138 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-18 3.9E-23 124.1 8.8 75 66-140 5-85 (85)
139 2cqc_A Arginine/serine-rich sp 99.8 3.1E-18 1E-22 124.5 11.3 77 65-141 12-94 (95)
140 2do0_A HnRNP M, heterogeneous 99.8 6.4E-18 2.2E-22 127.2 13.4 81 229-313 13-96 (114)
141 2cq2_A Hypothetical protein LO 99.8 7.3E-19 2.5E-23 130.7 8.0 85 229-315 23-110 (114)
142 2cq0_A Eukaryotic translation 99.8 2.9E-18 1E-22 126.6 11.3 80 64-143 11-96 (103)
143 2dgo_A Cytotoxic granule-assoc 99.8 4.7E-18 1.6E-22 128.1 12.6 80 65-144 12-97 (115)
144 2x1f_A MRNA 3'-END-processing 99.8 2.2E-18 7.6E-23 125.6 10.4 76 68-143 2-83 (96)
145 2dng_A Eukaryotic translation 99.8 4.6E-18 1.6E-22 125.5 12.2 81 229-315 13-97 (103)
146 2dnm_A SRP46 splicing factor; 99.8 2E-18 6.9E-23 127.5 10.2 78 65-142 10-93 (103)
147 2div_A TRNA selenocysteine ass 99.8 3.3E-18 1.1E-22 125.4 11.2 83 230-312 8-95 (99)
148 2d9p_A Polyadenylate-binding p 99.8 3.4E-18 1.2E-22 126.3 11.4 79 65-143 12-94 (103)
149 1x5s_A Cold-inducible RNA-bind 99.8 2.1E-18 7.2E-23 127.2 10.2 79 66-144 10-94 (102)
150 2fy1_A RNA-binding motif prote 99.8 6.7E-18 2.3E-22 127.4 13.1 79 65-143 4-87 (116)
151 1x5p_A Negative elongation fac 99.8 5.4E-18 1.9E-22 123.7 12.3 79 229-315 13-91 (97)
152 2e44_A Insulin-like growth fac 99.8 2.7E-18 9.2E-23 125.1 10.5 79 230-312 14-93 (96)
153 3p5t_L Cleavage and polyadenyl 99.8 5.8E-19 2E-23 127.1 6.9 79 232-314 2-86 (90)
154 2cpz_A CUG triplet repeat RNA- 99.8 3E-18 1E-22 129.2 11.0 77 67-143 24-106 (115)
155 1x5o_A RNA binding motif, sing 99.8 1.1E-17 3.9E-22 125.8 14.1 85 228-312 22-113 (114)
156 3lqv_A PRE-mRNA branch site pr 99.8 9.4E-19 3.2E-23 132.0 8.1 74 67-141 7-84 (115)
157 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.1E-19 2.1E-23 129.6 6.7 78 229-312 17-99 (100)
158 2dgv_A HnRNP M, heterogeneous 99.8 1.9E-18 6.4E-23 124.9 9.2 78 66-143 6-87 (92)
159 2la6_A RNA-binding protein FUS 99.8 3.6E-18 1.2E-22 125.2 10.8 72 69-140 14-99 (99)
160 3n9u_C Cleavage and polyadenyl 99.8 1.5E-18 5.2E-23 137.7 9.3 77 66-142 53-137 (156)
161 2kt5_A RNA and export factor-b 99.8 6.1E-18 2.1E-22 129.3 12.4 83 229-315 33-118 (124)
162 1x5t_A Splicing factor 3B subu 99.8 2.8E-18 9.5E-23 125.0 10.0 77 67-143 4-87 (96)
163 3md1_A Nuclear and cytoplasmic 99.8 2.9E-18 1E-22 121.4 9.8 74 69-142 2-81 (83)
164 2cqd_A RNA-binding region cont 99.8 6.4E-18 2.2E-22 127.6 12.2 79 65-143 14-97 (116)
165 3ns6_A Eukaryotic translation 99.8 8.2E-19 2.8E-23 128.8 7.0 79 230-311 5-93 (100)
166 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.3E-18 1.1E-22 126.1 10.3 78 66-143 10-93 (102)
167 2rs2_A Musashi-1, RNA-binding 99.8 2.4E-18 8.1E-23 128.4 9.5 83 228-315 22-108 (109)
168 3s7r_A Heterogeneous nuclear r 99.8 3.1E-18 1.1E-22 122.4 9.7 75 65-139 8-87 (87)
169 1fjc_A Nucleolin RBD2, protein 99.8 8.5E-19 2.9E-23 127.8 6.8 82 229-315 14-95 (96)
170 1x4e_A RNA binding motif, sing 99.8 4.5E-19 1.5E-23 126.2 5.2 77 230-310 4-84 (85)
171 2cqp_A RNA-binding protein 12; 99.8 2.5E-18 8.6E-23 125.8 9.3 80 229-312 13-96 (98)
172 1p1t_A Cleavage stimulation fa 99.8 1.6E-18 5.5E-23 128.3 8.3 80 230-313 7-90 (104)
173 2ywk_A Putative RNA-binding pr 99.8 2.5E-18 8.5E-23 125.0 9.1 77 65-141 13-94 (95)
174 2m2b_A RNA-binding protein 10; 99.8 1.9E-18 6.7E-23 133.3 9.0 79 228-311 20-108 (131)
175 2nlw_A Eukaryotic translation 99.8 3E-18 1E-22 127.0 9.6 78 230-311 14-100 (105)
176 2cq1_A PTB-like protein L; RRM 99.8 5.4E-18 1.9E-22 124.1 10.7 73 67-143 14-92 (101)
177 1x4d_A Matrin 3; structural ge 99.8 3.7E-18 1.3E-22 125.0 9.6 74 66-143 13-93 (102)
178 1wex_A Hypothetical protein (r 99.8 6.5E-18 2.2E-22 124.5 11.0 73 67-143 14-92 (104)
179 1x4h_A RNA-binding protein 28; 99.8 1.3E-17 4.6E-22 124.8 12.8 79 65-143 12-102 (111)
180 1p27_B RNA-binding protein 8A; 99.8 4E-18 1.4E-22 126.5 9.8 78 65-142 20-103 (106)
181 2dh8_A DAZ-associated protein 99.8 5E-18 1.7E-22 125.8 10.3 83 228-315 13-99 (105)
182 2cq4_A RNA binding motif prote 99.8 2.1E-18 7.2E-23 129.8 8.3 78 230-312 24-105 (114)
183 2dgp_A Bruno-like 4, RNA bindi 99.8 6.5E-18 2.2E-22 125.4 10.8 78 66-143 11-97 (106)
184 2ad9_A Polypyrimidine tract-bi 99.8 4.6E-18 1.6E-22 127.7 9.9 73 67-143 30-108 (119)
185 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.9E-18 2.3E-22 134.3 11.6 83 229-315 37-123 (156)
186 1x4b_A Heterogeneous nuclear r 99.7 4.4E-18 1.5E-22 128.5 9.8 82 230-316 26-111 (116)
187 1x4a_A Splicing factor, argini 99.7 1.5E-17 5E-22 124.1 12.6 77 66-143 20-100 (109)
188 2jrs_A RNA-binding protein 39; 99.7 3.3E-18 1.1E-22 127.4 8.9 77 67-143 25-107 (108)
189 3d2w_A TAR DNA-binding protein 99.7 4.1E-18 1.4E-22 122.2 9.0 78 229-313 9-86 (89)
190 1s79_A Lupus LA protein; RRM, 99.7 3.5E-18 1.2E-22 125.9 8.8 77 65-142 8-89 (103)
191 3pgw_S U1-70K; protein-RNA com 99.7 8.9E-19 3.1E-23 161.4 6.9 80 230-313 101-184 (437)
192 2e5g_A U6 snRNA-specific termi 99.7 5.9E-18 2E-22 122.8 9.7 81 230-316 7-87 (94)
193 1oo0_B CG8781-PA, drosophila Y 99.7 7.6E-18 2.6E-22 125.9 10.5 78 65-142 23-106 (110)
194 2dis_A Unnamed protein product 99.7 5.1E-18 1.7E-22 126.7 9.5 80 230-313 7-94 (109)
195 3ucg_A Polyadenylate-binding p 99.7 5.6E-18 1.9E-22 121.6 9.3 76 231-311 6-85 (89)
196 3ns6_A Eukaryotic translation 99.7 1.7E-18 5.7E-23 127.2 6.5 78 65-142 3-93 (100)
197 2kt5_A RNA and export factor-b 99.7 7.4E-17 2.5E-21 123.2 16.0 78 65-142 32-114 (124)
198 3ulh_A THO complex subunit 4; 99.7 7.3E-18 2.5E-22 125.4 10.1 75 66-140 27-106 (107)
199 3beg_B Splicing factor, argini 99.7 3.7E-18 1.3E-22 128.6 8.5 79 230-315 15-98 (115)
200 2cpf_A RNA binding motif prote 99.7 6E-18 2.1E-22 123.7 9.4 78 66-143 3-89 (98)
201 1wi8_A EIF-4B, eukaryotic tran 99.7 1.2E-17 4.2E-22 123.5 11.2 75 67-143 14-95 (104)
202 2div_A TRNA selenocysteine ass 99.7 4.4E-18 1.5E-22 124.7 8.5 78 65-142 6-94 (99)
203 3p5t_L Cleavage and polyadenyl 99.7 1.3E-18 4.6E-23 125.2 5.6 74 69-142 2-83 (90)
204 3s7r_A Heterogeneous nuclear r 99.7 7.4E-18 2.5E-22 120.4 9.5 75 229-308 9-87 (87)
205 2nlw_A Eukaryotic translation 99.7 7.2E-18 2.5E-22 124.9 9.7 77 65-141 12-99 (105)
206 2cqg_A TDP-43, TAR DNA-binding 99.7 2.5E-17 8.4E-22 121.6 12.5 83 228-316 12-98 (103)
207 2kxn_B Transformer-2 protein h 99.7 5.8E-18 2E-22 130.1 9.3 77 66-142 44-126 (129)
208 2krb_A Eukaryotic translation 99.7 2E-18 6.8E-23 121.7 6.2 72 231-306 1-81 (81)
209 1wg1_A KIAA1579 protein, homol 99.7 3.7E-18 1.3E-22 122.3 7.7 76 230-312 4-79 (88)
210 2dgw_A Probable RNA-binding pr 99.7 1.1E-17 3.6E-22 120.7 10.1 77 230-312 9-88 (91)
211 2cpe_A RNA-binding protein EWS 99.7 1.4E-17 4.7E-22 125.1 11.1 79 65-143 12-104 (113)
212 2cq4_A RNA binding motif prote 99.7 1.1E-17 3.8E-22 125.8 10.5 77 65-142 22-104 (114)
213 2fc8_A NCL protein; structure 99.7 7.1E-18 2.4E-22 124.3 9.2 80 229-315 13-96 (102)
214 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.6E-18 8.8E-23 126.2 6.7 73 68-142 19-98 (100)
215 3tyt_A Heterogeneous nuclear r 99.7 8.9E-18 3.1E-22 139.6 10.8 78 230-312 3-81 (205)
216 2dgx_A KIAA0430 protein; RRM d 99.7 1.3E-17 4.5E-22 121.4 10.4 75 67-142 8-90 (96)
217 2cqg_A TDP-43, TAR DNA-binding 99.7 1.6E-17 5.6E-22 122.6 11.1 80 65-144 12-95 (103)
218 2wbr_A GW182, gawky, LD47780P; 99.7 1E-17 3.5E-22 117.2 9.3 69 68-140 7-79 (89)
219 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-17 3.8E-22 130.5 10.6 76 229-308 61-140 (140)
220 2ek1_A RNA-binding protein 12; 99.7 3.2E-18 1.1E-22 124.4 6.8 77 230-310 14-94 (95)
221 1x4f_A Matrin 3; structural ge 99.7 6.1E-18 2.1E-22 125.6 8.3 73 67-143 24-103 (112)
222 2do0_A HnRNP M, heterogeneous 99.7 1.7E-17 5.7E-22 124.9 10.9 76 66-141 13-93 (114)
223 2dh8_A DAZ-associated protein 99.7 1.3E-17 4.4E-22 123.6 10.1 78 65-143 13-96 (105)
224 1fj7_A Nucleolin RBD1, protein 99.7 2.9E-18 1E-22 126.1 6.5 80 230-315 16-99 (101)
225 2la4_A Nuclear and cytoplasmic 99.7 2.1E-18 7.2E-23 126.9 5.6 70 68-141 27-100 (101)
226 3n9u_C Cleavage and polyadenyl 99.7 8.1E-18 2.8E-22 133.5 9.2 78 230-311 54-137 (156)
227 2mss_A Protein (musashi1); RNA 99.7 4.6E-18 1.6E-22 117.9 6.9 71 233-308 1-75 (75)
228 3ucg_A Polyadenylate-binding p 99.7 1.1E-17 3.9E-22 119.9 9.0 75 67-142 5-85 (89)
229 3ex7_B RNA-binding protein 8A; 99.7 1.7E-17 5.9E-22 127.1 10.5 78 66-143 20-103 (126)
230 2ki2_A SS-DNA binding protein 99.7 1.5E-18 5.1E-23 124.9 4.3 77 232-313 2-82 (90)
231 1x4e_A RNA binding motif, sing 99.7 3E-18 1E-22 121.9 5.7 73 67-139 4-82 (85)
232 2a3j_A U1 small nuclear ribonu 99.7 1.7E-17 5.7E-22 126.7 10.1 76 68-144 29-112 (127)
233 3egn_A RNA-binding protein 40; 99.7 6.5E-18 2.2E-22 132.4 8.0 81 229-313 43-132 (143)
234 2dng_A Eukaryotic translation 99.7 1.9E-17 6.5E-22 122.2 10.0 75 67-143 14-94 (103)
235 1p1t_A Cleavage stimulation fa 99.7 4.9E-18 1.7E-22 125.6 6.8 78 66-143 6-89 (104)
236 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.4E-18 2.2E-22 117.8 6.9 72 232-308 1-76 (77)
237 2jwn_A Embryonic polyadenylate 99.7 1.7E-17 5.7E-22 126.8 9.8 80 230-314 35-118 (124)
238 2dhg_A TRNA selenocysteine ass 99.7 1.3E-17 4.4E-22 123.4 8.7 78 66-143 7-91 (104)
239 2cqp_A RNA-binding protein 12; 99.7 1.4E-17 4.8E-22 121.7 8.6 75 67-141 14-94 (98)
240 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 9.4E-17 3.2E-21 125.2 13.9 74 66-139 61-140 (140)
241 1x4b_A Heterogeneous nuclear r 99.7 4.1E-17 1.4E-21 123.1 11.4 79 65-144 24-108 (116)
242 2dnq_A RNA-binding protein 4B; 99.7 4E-17 1.4E-21 117.4 10.8 72 66-143 6-81 (90)
243 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.9E-18 2.3E-22 117.6 6.5 71 69-139 1-76 (77)
244 2cpy_A RNA-binding protein 12; 99.7 2.1E-17 7.1E-22 124.3 9.3 78 65-143 12-95 (114)
245 2cpy_A RNA-binding protein 12; 99.7 1.1E-17 3.9E-22 125.7 7.9 79 229-312 13-95 (114)
246 2bz2_A Negative elongation fac 99.7 3.2E-17 1.1E-21 124.4 10.3 78 229-314 37-114 (121)
247 2cpi_A CCR4-NOT transcription 99.7 2.4E-17 8.3E-22 123.4 9.5 77 67-143 14-102 (111)
248 1wg5_A Heterogeneous nuclear r 99.7 5.2E-17 1.8E-21 120.0 10.9 78 230-312 14-95 (104)
249 2xnq_A Nuclear polyadenylated 99.7 4.4E-17 1.5E-21 118.8 10.3 69 68-142 22-95 (97)
250 4a8x_A RNA-binding protein wit 99.7 1.6E-17 5.4E-22 118.9 7.8 75 68-142 4-85 (88)
251 2fc9_A NCL protein; structure 99.7 7E-17 2.4E-21 118.7 11.4 76 65-143 12-92 (101)
252 2jvo_A Nucleolar protein 3; nu 99.7 2.9E-17 1E-21 122.2 9.4 71 67-143 30-104 (108)
253 2dgw_A Probable RNA-binding pr 99.7 5.2E-17 1.8E-21 117.0 10.4 75 66-142 8-87 (91)
254 2m2b_A RNA-binding protein 10; 99.7 2.4E-17 8.3E-22 127.1 9.1 76 66-142 21-108 (131)
255 2mss_A Protein (musashi1); RNA 99.7 1.3E-17 4.4E-22 115.7 6.8 69 70-139 1-75 (75)
256 1wg5_A Heterogeneous nuclear r 99.7 5.5E-17 1.9E-21 119.9 10.6 75 66-141 13-93 (104)
257 1why_A Hypothetical protein ri 99.7 4.5E-17 1.5E-21 118.8 10.0 72 67-142 16-93 (97)
258 2ek1_A RNA-binding protein 12; 99.7 9.9E-18 3.4E-22 121.8 6.3 74 68-141 15-94 (95)
259 2e5j_A Methenyltetrahydrofolat 99.7 5.2E-17 1.8E-21 118.5 10.1 75 65-142 16-94 (97)
260 2cpj_A Non-POU domain-containi 99.7 7.1E-17 2.4E-21 118.2 10.7 74 66-143 13-90 (99)
261 2lcw_A RNA-binding protein FUS 99.5 7.8E-19 2.7E-23 132.6 0.0 82 229-314 5-98 (116)
262 2jwn_A Embryonic polyadenylate 99.7 2.5E-17 8.6E-22 125.8 8.3 75 67-142 35-115 (124)
263 2jvr_A Nucleolar protein 3; RN 99.7 4.1E-17 1.4E-21 121.4 9.3 73 68-142 28-105 (111)
264 2lea_A Serine/arginine-rich sp 99.7 1.6E-17 5.6E-22 128.7 7.4 78 65-142 44-127 (135)
265 2ytc_A PRE-mRNA-splicing facto 99.7 6.6E-17 2.3E-21 114.9 9.9 71 66-140 10-85 (85)
266 2dgt_A RNA-binding protein 30; 99.7 1.4E-16 4.9E-21 114.9 11.8 72 66-143 8-83 (92)
267 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.9E-17 2E-21 128.9 10.7 78 66-143 37-120 (156)
268 1wez_A HnRNP H', FTP-3, hetero 99.7 7.1E-17 2.4E-21 118.8 10.2 80 230-315 14-96 (102)
269 2dnn_A RNA-binding protein 12; 99.7 8.4E-17 2.9E-21 119.5 10.7 75 65-141 13-92 (109)
270 1x4c_A Splicing factor, argini 99.7 1.2E-16 4E-21 119.0 11.4 71 68-143 15-94 (108)
271 2krb_A Eukaryotic translation 99.7 1.3E-17 4.5E-22 117.4 5.9 68 69-136 2-80 (81)
272 2kn4_A Immunoglobulin G-bindin 99.7 8.3E-17 2.8E-21 128.3 11.1 77 66-142 68-150 (158)
273 2f3j_A RNA and export factor b 99.7 5.3E-17 1.8E-21 131.6 10.1 81 229-313 86-169 (177)
274 1x4g_A Nucleolysin TIAR; struc 99.7 7.8E-17 2.7E-21 120.2 10.3 75 66-144 23-101 (109)
275 2db1_A Heterogeneous nuclear r 99.7 5.5E-17 1.9E-21 122.7 9.4 76 66-142 15-98 (118)
276 2ki2_A SS-DNA binding protein 99.7 8.2E-18 2.8E-22 121.0 4.4 73 69-142 2-80 (90)
277 2hgl_A HNRPF protein, heteroge 99.7 4.6E-17 1.6E-21 125.7 8.8 75 66-141 42-124 (136)
278 1x5o_A RNA binding motif, sing 99.7 7.3E-17 2.5E-21 121.3 9.7 77 66-142 23-112 (114)
279 1nu4_A U1A RNA binding domain; 99.7 2.2E-17 7.5E-22 120.4 6.5 76 67-143 7-90 (97)
280 2cpd_A Apobec-1 stimulating pr 99.7 3.1E-16 1.1E-20 114.8 12.7 72 66-143 13-90 (99)
281 2dnn_A RNA-binding protein 12; 99.7 7.1E-17 2.4E-21 119.9 9.2 75 230-310 15-92 (109)
282 2db1_A Heterogeneous nuclear r 99.7 6.3E-17 2.2E-21 122.4 9.0 78 229-311 15-98 (118)
283 2dgu_A Heterogeneous nuclear r 99.7 1.4E-16 4.8E-21 117.5 10.7 73 66-144 9-85 (103)
284 2dis_A Unnamed protein product 99.7 6.6E-17 2.2E-21 120.6 9.0 77 67-143 7-93 (109)
285 1sjr_A Polypyrimidine tract-bi 99.7 1.6E-16 5.6E-21 125.2 11.5 77 66-144 44-126 (164)
286 1wf0_A TDP-43, TAR DNA-binding 99.7 7.4E-17 2.5E-21 115.4 8.7 79 230-315 4-82 (88)
287 2lmi_A GRSF-1, G-rich sequence 99.7 3.2E-17 1.1E-21 121.9 6.9 78 229-311 9-92 (107)
288 1wel_A RNA-binding protein 12; 99.7 3.9E-17 1.3E-21 124.7 7.6 78 229-311 23-104 (124)
289 2kvi_A Nuclear polyadenylated 99.7 7.7E-17 2.6E-21 117.3 8.7 73 66-144 8-85 (96)
290 2f3j_A RNA and export factor b 99.7 5.2E-16 1.8E-20 125.7 14.5 79 64-142 84-167 (177)
291 3pgw_S U1-70K; protein-RNA com 99.7 2.7E-16 9.3E-21 144.8 14.4 79 64-142 98-182 (437)
292 2fc8_A NCL protein; structure 99.7 1.9E-16 6.6E-21 116.5 10.8 76 65-143 12-93 (102)
293 2dnp_A RNA-binding protein 14; 99.7 1.4E-16 4.9E-21 114.4 9.7 71 66-142 7-81 (90)
294 2diu_A KIAA0430 protein; struc 99.7 1.2E-16 4E-21 112.8 8.9 69 69-145 9-87 (96)
295 3q2s_C Cleavage and polyadenyl 99.7 7E-17 2.4E-21 136.3 9.2 78 230-311 67-150 (229)
296 2hgl_A HNRPF protein, heteroge 99.7 7.3E-17 2.5E-21 124.6 8.4 77 230-311 43-125 (136)
297 1wez_A HnRNP H', FTP-3, hetero 99.7 7.5E-17 2.6E-21 118.6 8.0 73 67-141 14-91 (102)
298 1iqt_A AUF1, heterogeneous nuc 99.7 2.6E-17 8.9E-22 114.1 5.1 71 233-308 1-75 (75)
299 3u1l_A PRE-mRNA-splicing facto 99.7 7.3E-17 2.5E-21 135.7 8.8 80 229-314 132-232 (240)
300 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.3E-16 4.4E-21 128.1 9.9 78 67-144 71-154 (165)
301 1fjc_A Nucleolin RBD2, protein 99.7 6.9E-17 2.4E-21 117.6 7.6 75 65-142 13-91 (96)
302 1iqt_A AUF1, heterogeneous nuc 99.7 2.3E-17 7.8E-22 114.4 4.6 70 70-139 1-75 (75)
303 2cpx_A Hypothetical protein FL 99.7 1.2E-16 4.1E-21 120.3 9.0 75 67-143 24-106 (115)
304 1x5p_A Negative elongation fac 99.7 5.1E-16 1.8E-20 113.2 12.1 73 65-143 12-88 (97)
305 1whx_A Hypothetical protein ri 99.7 1.4E-16 4.6E-21 119.2 9.1 74 67-144 9-86 (111)
306 1fj7_A Nucleolin RBD1, protein 99.7 3.5E-17 1.2E-21 120.3 5.7 74 67-142 16-95 (101)
307 2hzc_A Splicing factor U2AF 65 99.7 8.9E-17 3E-21 114.7 7.7 71 230-307 5-86 (87)
308 2lmi_A GRSF-1, G-rich sequence 99.7 6.7E-17 2.3E-21 120.1 7.1 76 65-141 8-91 (107)
309 3zzy_A Polypyrimidine tract-bi 99.7 2.7E-16 9.1E-21 119.5 10.3 75 67-144 27-108 (130)
310 2dit_A HIV TAT specific factor 99.7 5.6E-16 1.9E-20 116.0 11.8 81 229-313 13-104 (112)
311 2pe8_A Splicing factor 45; RRM 99.7 2.3E-16 7.7E-21 116.4 9.4 77 230-310 7-93 (105)
312 1wf1_A RNA-binding protein RAL 99.7 3.9E-16 1.3E-20 116.6 10.6 70 67-142 26-100 (110)
313 3q2s_C Cleavage and polyadenyl 99.7 8.9E-17 3E-21 135.7 7.7 77 67-143 67-151 (229)
314 2hgn_A Heterogeneous nuclear r 99.7 4.5E-17 1.5E-21 126.2 5.2 79 230-314 45-126 (139)
315 2dnl_A Cytoplasmic polyadenyla 99.7 2.4E-16 8.3E-21 118.4 8.7 74 66-140 6-86 (114)
316 2i2y_A Fusion protein consists 99.7 2.7E-16 9.1E-21 124.2 9.1 74 66-142 71-148 (150)
317 1wel_A RNA-binding protein 12; 99.7 1E-16 3.5E-21 122.4 6.3 75 67-142 24-104 (124)
318 4f02_A Polyadenylate-binding p 99.7 4E-16 1.4E-20 130.6 10.5 78 230-311 14-95 (213)
319 2adc_A Polypyrimidine tract-bi 99.7 4.4E-16 1.5E-20 131.8 10.8 78 229-311 32-110 (229)
320 1wf0_A TDP-43, TAR DNA-binding 99.7 1.8E-16 6E-21 113.5 7.0 75 66-143 3-79 (88)
321 3d2w_A TAR DNA-binding protein 99.7 2.7E-16 9.2E-21 112.7 7.9 72 68-142 11-84 (89)
322 2lcw_A RNA-binding protein FUS 99.5 8.5E-18 2.9E-22 126.9 0.0 79 65-143 4-96 (116)
323 1wg1_A KIAA1579 protein, homol 99.7 3.7E-16 1.3E-20 111.8 8.6 72 67-143 4-79 (88)
324 2cqh_A IGF-II mRNA-binding pro 99.7 3.6E-16 1.2E-20 113.0 8.5 71 67-142 7-83 (93)
325 2xs2_A Deleted in azoospermia- 99.7 1.3E-16 4.6E-21 117.4 6.3 77 65-142 6-86 (102)
326 2hgm_A HNRPF protein, heteroge 99.6 1.9E-16 6.5E-21 120.4 7.2 75 66-141 40-120 (126)
327 3pgw_A U1-A; protein-RNA compl 99.6 2.8E-15 9.4E-20 130.8 15.3 74 64-140 203-281 (282)
328 3egn_A RNA-binding protein 40; 99.6 2E-16 6.8E-21 123.9 7.2 76 66-142 43-130 (143)
329 1b7f_A Protein (SXL-lethal pro 99.6 7E-16 2.4E-20 123.8 10.4 80 230-313 2-85 (168)
330 1fxl_A Paraneoplastic encephal 99.6 7.2E-16 2.5E-20 123.5 10.4 79 231-313 2-84 (167)
331 2xs2_A Deleted in azoospermia- 99.6 1.9E-16 6.6E-21 116.5 6.4 78 230-313 8-88 (102)
332 2dha_A FLJ20171 protein; RRM d 99.6 1.9E-16 6.5E-21 120.1 6.5 76 66-141 21-104 (123)
333 2e5i_A Heterogeneous nuclear r 99.6 1.7E-15 5.7E-20 114.6 11.3 72 69-144 26-104 (124)
334 2cq2_A Hypothetical protein LO 99.6 3.7E-16 1.3E-20 116.0 7.3 72 66-141 23-105 (114)
335 2hgm_A HNRPF protein, heteroge 99.6 5.1E-16 1.7E-20 118.0 8.0 76 230-311 41-121 (126)
336 2hgn_A Heterogeneous nuclear r 99.6 1.4E-16 5E-21 123.3 4.9 74 66-141 44-122 (139)
337 3nmr_A Cugbp ELAV-like family 99.6 6.2E-16 2.1E-20 124.9 8.7 82 231-313 3-90 (175)
338 1qm9_A Polypyrimidine tract-bi 99.6 8.5E-16 2.9E-20 126.9 9.3 76 231-311 3-79 (198)
339 2e5g_A U6 snRNA-specific termi 99.6 1.3E-15 4.5E-20 110.3 9.1 72 66-141 6-81 (94)
340 2qfj_A FBP-interacting repress 99.6 1.5E-15 5E-20 127.1 9.8 79 230-312 27-109 (216)
341 2e44_A Insulin-like growth fac 99.6 1.9E-15 6.6E-20 109.8 8.8 74 67-142 14-92 (96)
342 2dha_A FLJ20171 protein; RRM d 99.6 8.3E-16 2.9E-20 116.5 7.0 76 230-310 22-104 (123)
343 2bz2_A Negative elongation fac 99.6 2.3E-15 7.8E-20 114.2 9.3 71 67-143 38-112 (121)
344 2dnl_A Cytoplasmic polyadenyla 99.6 1.2E-15 4E-20 114.7 7.1 64 230-294 7-80 (114)
345 2voo_A Lupus LA protein; RNA-b 99.6 2E-15 6.7E-20 124.1 9.0 77 67-143 108-188 (193)
346 3md3_A Nuclear and cytoplasmic 99.6 3.3E-15 1.1E-19 119.5 10.2 75 66-140 85-165 (166)
347 2j8a_A Histone-lysine N-methyl 99.6 1.8E-15 6.2E-20 112.9 7.7 74 69-142 3-96 (136)
348 3v4m_A Splicing factor U2AF 65 99.6 2.2E-15 7.6E-20 111.1 8.1 77 230-310 4-96 (105)
349 3beg_B Splicing factor, argini 99.6 2.3E-15 8E-20 113.2 8.1 70 67-141 15-93 (115)
350 2hzc_A Splicing factor U2AF 65 99.6 3E-15 1E-19 106.7 8.0 68 65-137 3-85 (87)
351 3tht_A Alkylated DNA repair pr 99.6 3.4E-15 1.2E-19 132.2 9.6 80 228-310 15-98 (345)
352 2d9o_A DNAJ (HSP40) homolog, s 99.6 2.2E-14 7.4E-19 104.5 12.2 79 231-316 10-95 (100)
353 2j8a_A Histone-lysine N-methyl 99.6 3.4E-15 1.2E-19 111.5 7.9 75 232-310 3-95 (136)
354 2cjk_A Nuclear polyadenylated 99.6 4.9E-15 1.7E-19 118.7 9.0 75 67-142 86-166 (167)
355 1l3k_A Heterogeneous nuclear r 99.6 6.9E-15 2.4E-19 121.0 9.9 79 229-312 11-93 (196)
356 2voo_A Lupus LA protein; RNA-b 99.6 9.5E-15 3.2E-19 120.0 9.9 81 231-316 109-192 (193)
357 3sde_A Paraspeckle component 1 99.6 1.1E-14 3.7E-19 125.6 10.8 76 229-310 20-95 (261)
358 2g4b_A Splicing factor U2AF 65 99.6 7.5E-15 2.6E-19 118.2 9.2 72 68-139 94-171 (172)
359 2yh0_A Splicing factor U2AF 65 99.6 2.8E-14 9.4E-19 117.6 11.9 77 66-142 112-194 (198)
360 3s6e_A RNA-binding protein 39; 99.6 1.4E-14 4.7E-19 108.2 9.0 77 230-310 6-92 (114)
361 1fje_B Nucleolin RBD12, protei 99.5 2E-14 6.7E-19 116.2 9.6 74 66-142 97-174 (175)
362 3ue2_A Poly(U)-binding-splicin 99.5 1.5E-14 5E-19 108.8 7.9 77 230-310 19-108 (118)
363 2pe8_A Splicing factor 45; RRM 99.5 3.6E-14 1.2E-18 104.5 9.7 75 67-141 7-93 (105)
364 3u1l_A PRE-mRNA-splicing facto 99.5 2.4E-14 8.3E-19 120.3 8.1 74 66-143 132-230 (240)
365 1jmt_A Splicing factor U2AF 35 99.5 9.4E-15 3.2E-19 107.6 2.6 69 236-308 20-103 (104)
366 2dit_A HIV TAT specific factor 99.5 4.6E-13 1.6E-17 100.0 11.1 75 67-143 14-103 (112)
367 2d9o_A DNAJ (HSP40) homolog, s 99.5 5E-13 1.7E-17 97.2 10.6 72 68-142 10-90 (100)
368 3tht_A Alkylated DNA repair pr 99.4 2.8E-13 9.6E-18 119.9 9.3 72 65-140 15-97 (345)
369 3v4m_A Splicing factor U2AF 65 99.4 1E-12 3.4E-17 96.8 8.7 75 67-141 4-96 (105)
370 2dnr_A Synaptojanin-1; RRM dom 99.4 1.6E-12 5.6E-17 90.8 7.8 74 229-311 5-86 (91)
371 1jmt_A Splicing factor U2AF 35 99.4 1.7E-13 5.8E-18 100.8 2.9 67 73-139 20-103 (104)
372 3ue2_A Poly(U)-binding-splicin 99.3 3.8E-12 1.3E-16 95.5 8.0 75 67-141 19-108 (118)
373 1owx_A Lupus LA protein, SS-B, 99.3 1.1E-11 3.7E-16 92.5 9.9 75 228-308 15-93 (121)
374 1ufw_A Synaptojanin 2; RNP dom 99.2 1.2E-11 4.2E-16 86.8 6.0 72 229-309 13-93 (95)
375 3s6e_A RNA-binding protein 39; 99.2 4.9E-11 1.7E-15 88.8 9.3 72 68-141 7-92 (114)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 1.6E-09 5.4E-14 75.8 8.1 68 69-143 8-87 (91)
377 1owx_A Lupus LA protein, SS-B, 99.0 2.3E-09 7.8E-14 79.9 9.3 67 69-139 19-93 (121)
378 3dxb_A Thioredoxin N-terminall 98.9 1.5E-09 5.1E-14 91.0 7.5 76 231-310 124-212 (222)
379 2l9w_A U4/U6 snRNA-associated- 98.8 1.9E-08 6.6E-13 71.9 8.0 70 231-306 21-95 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.8 1.3E-08 4.4E-13 71.4 6.4 64 69-139 16-92 (95)
381 3dxb_A Thioredoxin N-terminall 98.6 7.7E-08 2.6E-12 80.4 6.8 62 80-141 141-212 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.4 1.7E-06 5.9E-11 61.9 8.0 68 67-139 20-97 (117)
383 1wey_A Calcipressin 1; structu 98.3 2.5E-06 8.4E-11 60.9 7.8 76 231-312 5-85 (104)
384 1uw4_A UPF3X; nonsense mediate 98.3 9.2E-06 3.1E-10 57.0 10.1 77 232-309 2-86 (91)
385 1wwh_A Nucleoporin 35, nucleop 97.8 4.4E-05 1.5E-09 56.0 6.6 64 230-297 23-86 (119)
386 2dhx_A Poly (ADP-ribose) polym 97.8 0.00019 6.5E-09 50.9 9.6 66 66-137 6-79 (104)
387 2dhx_A Poly (ADP-ribose) polym 97.7 0.00015 5.2E-09 51.4 7.8 67 231-306 8-79 (104)
388 1whv_A Poly(A)-specific ribonu 97.7 0.00013 4.6E-09 51.0 6.6 54 69-129 17-70 (100)
389 2l08_A Regulator of nonsense t 97.6 0.00013 4.5E-09 51.4 6.4 78 231-309 9-94 (97)
390 3ctr_A Poly(A)-specific ribonu 97.6 8E-05 2.7E-09 52.4 5.2 55 231-290 6-60 (101)
391 1whv_A Poly(A)-specific ribonu 97.6 0.00033 1.1E-08 49.1 7.5 55 231-290 16-70 (100)
392 1wey_A Calcipressin 1; structu 97.5 0.00018 6.2E-09 51.3 5.8 69 69-141 6-83 (104)
393 3ctr_A Poly(A)-specific ribonu 97.5 0.00016 5.4E-09 50.9 4.9 54 69-129 7-60 (101)
394 1uw4_A UPF3X; nonsense mediate 97.1 0.0032 1.1E-07 44.0 8.2 61 69-129 2-66 (91)
395 3pq1_A Poly(A) RNA polymerase; 96.8 0.00054 1.8E-08 62.7 3.3 55 231-287 53-107 (464)
396 3pq1_A Poly(A) RNA polymerase; 96.8 0.00066 2.3E-08 62.1 3.7 57 67-127 52-108 (464)
397 3p3d_A Nucleoporin 53; structu 96.5 0.002 6.7E-08 47.9 3.6 72 231-308 7-96 (132)
398 2l08_A Regulator of nonsense t 96.4 0.0081 2.8E-07 42.2 5.9 59 69-129 10-74 (97)
399 1wwh_A Nucleoporin 35, nucleop 95.6 0.05 1.7E-06 39.8 7.4 69 66-139 22-94 (119)
400 3d45_A Poly(A)-specific ribonu 92.7 0.33 1.1E-05 45.1 8.1 62 68-136 440-501 (507)
401 3d45_A Poly(A)-specific ribonu 92.2 0.28 9.4E-06 45.7 7.0 56 231-291 440-495 (507)
402 3p3d_A Nucleoporin 53; structu 90.0 0.4 1.4E-05 35.5 4.5 72 68-140 7-97 (132)
403 4eyt_A Telomerase associated p 78.4 13 0.00045 25.2 8.8 57 231-291 12-68 (129)
404 2g0c_A ATP-dependent RNA helic 75.3 9.9 0.00034 24.8 6.3 68 233-309 2-75 (76)
405 2ki0_A DS119; beta-alpha-beta, 51.0 7 0.00024 20.5 1.3 19 66-89 3-21 (36)
406 2lfv_A Protein DAMX; cell divi 52.9 4 0.00014 29.0 0.0 57 231-291 25-86 (106)
407 3fry_A Probable copper-exporti 46.8 43 0.0015 20.9 5.2 60 231-294 6-65 (73)
408 4e8u_A Putative uncharacterize 44.8 39 0.0013 26.1 5.2 56 70-126 14-81 (172)
409 4e8u_A Putative uncharacterize 43.2 35 0.0012 26.4 4.8 55 233-287 14-81 (172)
410 3j21_T 50S ribosomal protein L 42.4 76 0.0026 21.4 6.2 54 234-287 25-81 (86)
411 3ts2_A Protein LIN-28 homolog 39.7 6.9 0.00024 29.6 0.3 28 246-277 2-29 (148)
412 3j21_T 50S ribosomal protein L 36.0 82 0.0028 21.2 5.2 53 73-127 27-82 (86)
413 4eyt_A Telomerase associated p 32.6 1.1E+02 0.0039 20.6 9.7 65 68-138 12-78 (129)
414 2e7g_A Putative ribosome-bindi 32.5 70 0.0024 23.3 4.8 35 255-289 43-78 (129)
415 4a4j_A Pacszia, cation-transpo 32.2 85 0.0029 18.9 5.3 54 232-287 4-60 (69)
416 3dxs_X Copper-transporting ATP 28.1 1.1E+02 0.0037 18.8 6.1 55 232-288 4-62 (74)
417 2f06_A Conserved hypothetical 26.9 1.4E+02 0.0048 21.6 5.9 50 245-295 86-136 (144)
418 3fut_A Dimethyladenosine trans 25.7 51 0.0017 27.5 3.4 29 69-98 111-139 (271)
419 3lpe_A Putative transcription 24.2 1.7E+02 0.0057 19.7 5.6 35 257-292 39-73 (92)
420 1yg0_A COP associated protein; 23.9 1.1E+02 0.0039 17.7 6.4 55 233-289 4-61 (66)
421 2bkf_A Zinc-finger protein NBR 22.2 1.9E+02 0.0063 19.5 5.4 66 68-138 17-84 (87)
422 2l3m_A Copper-ION-binding prot 20.9 1.4E+02 0.0048 17.6 6.5 58 232-292 7-68 (71)
423 3d53_A Inorganic pyrophosphata 20.8 1.4E+02 0.0048 23.0 4.7 39 244-289 131-169 (173)
424 1wvf_A 4-cresol dehydrogenase 20.4 74 0.0025 29.3 3.7 41 247-287 217-262 (520)
425 3h7h_B Transcription elongatio 20.2 1.3E+02 0.0043 21.1 4.0 32 95-129 41-72 (106)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5.7e-37 Score=258.01 Aligned_cols=160 Identities=22% Similarity=0.337 Sum_probs=141.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+.+||||+|||.++|+++|+++|++||.|.+|+|+++ +++++|||||+|.+.++|++|++.++ .|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4589999999999999999999999999999999987 78999999999999999999999999 89999998876
Q ss_pred cCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 020954 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (319)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
.......
T Consensus 94 ~~~~~~~------------------------------------------------------------------------- 100 (213)
T 4f02_A 94 RDPSLRK------------------------------------------------------------------------- 100 (213)
T ss_dssp CCTHHHH-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 4221100
Q ss_pred CCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC--CCCEEEEEecChHHHHHHHHHhCCCcccCCC
Q 020954 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQDTVSSTAALNNLQGTILYSSP 298 (319)
Q Consensus 221 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~--~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~ 298 (319)
...++|||+||+.++|+++|+++|+.||.|++|+|+.+. +++||||+|.+.++|.+||+.|||..|+
T Consensus 101 --------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~--- 169 (213)
T 4f02_A 101 --------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN--- 169 (213)
T ss_dssp --------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred --------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC---
Confidence 014589999999999999999999999999999998754 3569999999999999999999999999
Q ss_pred CCCeEEEEecCCC
Q 020954 299 TSDGIRLEFAKSR 311 (319)
Q Consensus 299 ~G~~i~V~~ak~~ 311 (319)
|+.|+|+|++.+
T Consensus 170 -g~~i~V~~a~~~ 181 (213)
T 4f02_A 170 -DRKVFVGRFKSR 181 (213)
T ss_dssp -TEECEEEECCCH
T ss_pred -CEEEEEEEcCCC
Confidence 668999999875
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=234.03 Aligned_cols=157 Identities=20% Similarity=0.326 Sum_probs=138.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccCC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (319)
|+|||+|||.++|+++|+++|+.||.|.+|++..+ .++++|||||+|.+.++|.+|++.++ .|+.|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 69999999999999999999999999999999887 67899999999999999999999998 99999999886421
Q ss_pred cccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCC
Q 020954 144 RSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPS 223 (319)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (319)
..
T Consensus 81 ~~------------------------------------------------------------------------------ 82 (166)
T 3md3_A 81 QS------------------------------------------------------------------------------ 82 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 224 GPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 224 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
...+.++|||+|||.++|+++|+++|++||.|.++++..+. .++||||+|.+.++|.+|++.|||..++
T Consensus 83 ---~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---- 155 (166)
T 3md3_A 83 ---SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---- 155 (166)
T ss_dssp ---CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----
T ss_pred ---CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC----
Confidence 01136689999999999999999999999999999998753 3459999999999999999999999999
Q ss_pred CCeEEEEecCC
Q 020954 300 SDGIRLEFAKS 310 (319)
Q Consensus 300 G~~i~V~~ak~ 310 (319)
|+.|+|+||+.
T Consensus 156 g~~i~v~~a~~ 166 (166)
T 3md3_A 156 GRPLRINWAAK 166 (166)
T ss_dssp TEECEEEESCC
T ss_pred CcEEEEEecCC
Confidence 66899999973
No 3
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=8.1e-34 Score=248.88 Aligned_cols=241 Identities=23% Similarity=0.317 Sum_probs=148.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHH----HHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v 136 (319)
..+.++|||+|||.++++++|+ ++|+.||.|.+|+|.. +++++|||||+|.+.++|++|++.|| .|+.|+|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 3446999999999999999966 8999999999999886 77899999999999999999999999 9999999
Q ss_pred EEcccCCccc--CCCCCCCCccc-cc-ccCCCCCCC------CCCCCCCCCCCCC-----CCCCCCC---CCCCCCCCCC
Q 020954 137 DLAKSNSRSK--RSRTDDEWTGS-DK-KARGPSAFS------RGTADLGIGSVHM-----PGMGNSA---FNTIGYPHTQ 198 (319)
Q Consensus 137 ~~a~~~~~~~--~~~~~~~~~~~-~~-~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~---~~~~g~~~~~ 198 (319)
+|++...... +.......... .. +........ ........+.... ....... ..+.|.....
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9997655411 11111000000 00 000000000 0000000000000 0000000 0000000000
Q ss_pred -CCCCCCCCCCCcc---ccc------ccCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC
Q 020954 199 -SHENFDARGGSLI---TTA------KFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG 268 (319)
Q Consensus 199 -~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~ 268 (319)
..+.......... +.. ..............+++++|||+|||.++|+++|+++|++||.|++|++..++
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 0000000000000 000 00000000111344568899999999999999999999999999999999743
Q ss_pred CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecCC
Q 020954 269 PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKS 310 (319)
Q Consensus 269 ~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~ 310 (319)
++||||+|.+.++|.+|++.|||+.|.+ |+.|+|+|+|+
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~akk 282 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKITQ---NNAMKISFAKK 282 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeCC---CCEEEEEEecC
Confidence 5799999999999999999999999982 33799999974
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2e-34 Score=239.04 Aligned_cols=170 Identities=19% Similarity=0.263 Sum_probs=138.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (319)
..+.++|||+|||.++|+++|+++|+.||.|.+|+|+.+ ++.++|||||+|.+.++|++|++..+ .|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 445699999999999999999999999999999999887 68899999999999999999998744 8999999988
Q ss_pred ccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 020954 140 KSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNS 219 (319)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (319)
.......+.
T Consensus 90 ~~~~~~~~~----------------------------------------------------------------------- 98 (196)
T 1l3k_A 90 VSREDSQRP----------------------------------------------------------------------- 98 (196)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cCccccccc-----------------------------------------------------------------------
Confidence 643211100
Q ss_pred CCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 220 SAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 220 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
......++|||+|||.++|+++|+++|+.||.|.+|++..+. .++||||+|.+.++|.+|++. +|..|+
T Consensus 99 ------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~ 171 (196)
T 1l3k_A 99 ------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN 171 (196)
T ss_dssp ----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET
T ss_pred ------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC
Confidence 001235789999999999999999999999999999998753 355999999999999999986 899999
Q ss_pred CCCCCCeEEEEecCCCCCCCC
Q 020954 296 SSPTSDGIRLEFAKSRMGMPR 316 (319)
Q Consensus 296 ~~~~G~~i~V~~ak~~~~~~~ 316 (319)
|+.|+|.|+..+...+.
T Consensus 172 ----G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 172 ----GHNCEVRKALSKQEMAS 188 (196)
T ss_dssp ----TEECEEEECC-------
T ss_pred ----CEEEEEEecCChhHhcc
Confidence 56799999998865543
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.2e-34 Score=231.25 Aligned_cols=157 Identities=25% Similarity=0.385 Sum_probs=139.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|+.||.|.++++..+ ++.++|||||+|.+.++|++|++.++ .|+.|+|.|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3599999999999999999999999999999999876 78899999999999999999999888 89999999986
Q ss_pred cCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 020954 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (319)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
....
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 4210
Q ss_pred CCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccC
Q 020954 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYS 296 (319)
Q Consensus 221 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~ 296 (319)
....++|||+|||.++|+++|+++|++||.|.++++..+.. ++||||+|.+.++|.+|++.|||..+.+
T Consensus 86 -------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 86 -------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp -------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred -------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 01256899999999999999999999999999999987542 3599999999999999999999999986
Q ss_pred CCCCCeEEEEec
Q 020954 297 SPTSDGIRLEFA 308 (319)
Q Consensus 297 ~~~G~~i~V~~a 308 (319)
+ +++|+|+||
T Consensus 159 ~--~~~l~V~~A 168 (168)
T 1b7f_A 159 G--SQPLSVRLA 168 (168)
T ss_dssp C--SSCCEEEEC
T ss_pred C--CeEEEEEeC
Confidence 4 478999996
No 6
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.1e-34 Score=233.47 Aligned_cols=160 Identities=20% Similarity=0.328 Sum_probs=137.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CC--CCccEEEEEEcCHHHHHHHHHHcC-------CCcEEE
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQ--NSQPFAFAVFSDQQSALGAMYALN-------KGSTLY 135 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~--~~~g~afV~f~~~~~A~~A~~~l~-------~g~~l~ 135 (319)
+.++|||+|||.++|+++|+++|++||.|.+|+|..+ ++ +++|||||+|.+.++|++|++.++ .++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4589999999999999999999999999999999887 33 789999999999999999999988 256677
Q ss_pred EEEcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 020954 136 IDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAK 215 (319)
Q Consensus 136 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 215 (319)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 766553210
Q ss_pred cCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC---CCEEEEEecChHHHHHHHHHhCCC
Q 020954 216 FNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG---PPVAFVDFQDTVSSTAALNNLQGT 292 (319)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~---~~~aFV~F~~~~~A~~Al~~lnG~ 292 (319)
.....++|||+|||.++|+++|+++|++||.|.+|++..+.. ++||||+|.+.++|.+|++.|||.
T Consensus 91 -----------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 91 -----------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp -----------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred -----------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCC
Confidence 001366899999999999999999999999999999987533 459999999999999999999999
Q ss_pred cccCCCCCCeEEEEecC
Q 020954 293 ILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 293 ~i~~~~~G~~i~V~~ak 309 (319)
.+.+.. |++|+|+||.
T Consensus 160 ~~~~g~-~~~l~V~~ad 175 (175)
T 3nmr_A 160 QTMEGC-SSPMVVKFAD 175 (175)
T ss_dssp CCCTTC-SSCCEEEECC
T ss_pred cccCCC-CCCeEEEecC
Confidence 887643 5789999984
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.6e-33 Score=227.36 Aligned_cols=156 Identities=28% Similarity=0.409 Sum_probs=138.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.++|||+|||.++++++|+++|+.||.|.++++..+ +++++|||||+|.+.++|++|++.++ .|+.|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 489999999999999999999999999999999887 78899999999999999999999888 899999998864
Q ss_pred CCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 020954 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (319)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
....
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (167)
T 1fxl_A 82 SSAS---------------------------------------------------------------------------- 85 (167)
T ss_dssp CCGG----------------------------------------------------------------------------
T ss_pred Cccc----------------------------------------------------------------------------
Confidence 2110
Q ss_pred CCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 222 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
...++|||+|||.++|+++|+++|++||.|.++++..+. +++||||+|.+.++|.+|++.|||..+.++
T Consensus 86 -------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 86 -------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp -------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred -------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 125689999999999999999999999999999998754 246999999999999999999999999965
Q ss_pred CCCCeEEEEec
Q 020954 298 PTSDGIRLEFA 308 (319)
Q Consensus 298 ~~G~~i~V~~a 308 (319)
..+|+|+||
T Consensus 159 --~~~i~v~~A 167 (167)
T 1fxl_A 159 --TEPITVKFA 167 (167)
T ss_dssp --SSCCEEEEC
T ss_pred --ccceEEEeC
Confidence 235999986
No 8
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=6.5e-34 Score=237.25 Aligned_cols=193 Identities=14% Similarity=0.134 Sum_probs=140.6
Q ss_pred CcceEEEeCCC-CCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 67 EVRTLFVAGLP-EDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 67 ~~~~l~V~nLp-~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
+.++|||+||+ .++++++|+++|++||.|.+|+|..+ .+|||||+|.+.++|++|++.|| .|+.|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 35899999999 89999999999999999999999864 47999999999999999999999 999999999976
Q ss_pred CCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 020954 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (319)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
.....+... .. ..+.. ....+. ... ..+.... ...
T Consensus 80 ~~~~p~~~~--~~---------~~~~~---~~~~~~-----~~~------------------~~r~~~~-~~~------- 114 (205)
T 3tyt_A 80 PAIMPGQSY--GL---------EDGSC---SYKDFS-----ESR------------------NNRFSTP-EQA------- 114 (205)
T ss_dssp SCCCCCSCC--BC---------TTSCB---SEEECT-----TCT------------------TCSCSSH-HHH-------
T ss_pred CccCCCccc--cc---------ccCCc---cccccC-----CCc------------------cccccCc-ccc-------
Confidence 442111100 00 00000 000000 000 0000000 000
Q ss_pred CCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCc--eEEEEeecC--CCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGF--LKLKIQSTY--GPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 222 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i--~~v~i~~~~--~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
......+++++|||+|||.++|+++|+++|++||.| .+|+++.+. +++||||+|.+.++|.+||..|||+.|.++
T Consensus 115 -~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 115 -AKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp -TTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred -cccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 000112357899999999999999999999999999 899998753 346999999999999999999999999987
Q ss_pred CCCCeEEEEec
Q 020954 298 PTSDGIRLEFA 308 (319)
Q Consensus 298 ~~G~~i~V~~a 308 (319)
..-.++.|.|+
T Consensus 194 ~~~~p~~vk~~ 204 (205)
T 3tyt_A 194 NGPYPYTLKLC 204 (205)
T ss_dssp SSSSCEECEEE
T ss_pred CCCcceEEEec
Confidence 54457777765
No 9
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=3.6e-33 Score=237.40 Aligned_cols=189 Identities=23% Similarity=0.281 Sum_probs=142.2
Q ss_pred CcceEEEeCCCC-CCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 67 EVRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 67 ~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
++++|||+|||. ++++++|+++|+.||.|.+|+|..+. +|||||+|.+.++|++|++.|+ .|+.|+|.+++.
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 349999999999 99999999999999999999998754 7899999999999999999888 999999999976
Q ss_pred CCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 020954 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (319)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
............. . ..+...... .. +.... ..
T Consensus 110 ~~~~~~~~~~~~~-~-~~~~~~~~~------~~-------------------------------~~~~~---------~~ 141 (229)
T 2adc_A 110 QNVQLPREGQEDQ-G-LTKDYGNSP------LH-------------------------------RFKKP---------GS 141 (229)
T ss_dssp CCCCCCCSSSSTT-T-TEEECTTCS------SC-------------------------------CCCST---------TS
T ss_pred ccccCcccccccc-c-cccccccCc------cc-------------------------------ccCCc---------cc
Confidence 4332111000000 0 000000000 00 00000 00
Q ss_pred CCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCC-CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCccc-CCCC
Q 020954 222 PSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILY-SSPT 299 (319)
Q Consensus 222 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG-~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~-~~~~ 299 (319)
.......+++++|||+|||.++|+++|+++|++|| .|.+|+++. .+++||||+|.+.++|.+|++.|||..+. ++
T Consensus 142 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~-- 218 (229)
T 2adc_A 142 KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ-KDRKMALIQMGSVEEAVQALIDLHNHDLGENH-- 218 (229)
T ss_dssp GGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS-SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSC--
T ss_pred cccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE-CCCcEEEEEECCHHHHHHHHHHHCCCccCCCC--
Confidence 00001123578999999999999999999999999 999999976 35679999999999999999999999998 54
Q ss_pred CCeEEEEecCCC
Q 020954 300 SDGIRLEFAKSR 311 (319)
Q Consensus 300 G~~i~V~~ak~~ 311 (319)
.|+|+|++++
T Consensus 219 --~l~v~~a~~~ 228 (229)
T 2adc_A 219 --HLRVSFSKST 228 (229)
T ss_dssp --BCEEEECSSC
T ss_pred --eEEEEEecCC
Confidence 6999999975
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=5.1e-34 Score=240.25 Aligned_cols=174 Identities=14% Similarity=0.183 Sum_probs=143.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.+.++|||+|||.++|+++|+++|+.||.|.+|+|..+ +++++|||||+|.+.++|++|++.|+ .|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34589999999999999999999999999999999887 78899999999999999999999888 8999999876
Q ss_pred ccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 020954 140 KSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNS 219 (319)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (319)
........... ..
T Consensus 106 ~~~~~~~~~~~---------~~---------------------------------------------------------- 118 (216)
T 2qfj_A 106 SNIGQAQPIID---------QL---------------------------------------------------------- 118 (216)
T ss_dssp SCCGGGHHHHH---------HH----------------------------------------------------------
T ss_pred CCccccchhhh---------hh----------------------------------------------------------
Confidence 54321100000 00
Q ss_pred CCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 220 SAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 220 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
.......++|||+|||.++|+++|+++|++||.|++|++..+. .++||||+|.+.++|.+|++.|||..|+
T Consensus 119 -----~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 193 (216)
T 2qfj_A 119 -----AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG 193 (216)
T ss_dssp -----HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred -----hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC
Confidence 0000136799999999999999999999999999999998753 2569999999999999999999999999
Q ss_pred CCCCCCeEEEEecCCCCCCC
Q 020954 296 SSPTSDGIRLEFAKSRMGMP 315 (319)
Q Consensus 296 ~~~~G~~i~V~~ak~~~~~~ 315 (319)
|+.|+|+|++.+....
T Consensus 194 ----g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 194 ----GQYLRVGKAVTPPMPL 209 (216)
T ss_dssp ----SSBCEEEECSSCSSTT
T ss_pred ----CcEEEEEEecCCCCCC
Confidence 5579999999886544
No 11
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2.5e-34 Score=232.45 Aligned_cols=157 Identities=17% Similarity=0.263 Sum_probs=138.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC--CCcEEEEEEcccC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDLAKSN 142 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~--~g~~l~v~~a~~~ 142 (319)
+.++|||+|||.++|+++|+++|+.||.|.+|+|..+ +|+++|||||+|.+.++|++|+..++ .|+.|.+.++...
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 4699999999999999999999999999999999887 78999999999999999999998755 8888888776532
Q ss_pred CcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 020954 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (319)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (319)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 2cjk_A 82 DEQ----------------------------------------------------------------------------- 84 (167)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred hhc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred CCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCC
Q 020954 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSP 298 (319)
Q Consensus 223 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~ 298 (319)
...++|||+|||.++|+++|+++|++||.|.+|++..+. ++|||||+|.+.++|.+|++ |||..++
T Consensus 85 ------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~--- 154 (167)
T 2cjk_A 85 ------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK--- 154 (167)
T ss_dssp ------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS---
T ss_pred ------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC---
Confidence 125589999999999999999999999999999998643 45699999999999999998 9999999
Q ss_pred CCCeEEEEecCCC
Q 020954 299 TSDGIRLEFAKSR 311 (319)
Q Consensus 299 ~G~~i~V~~ak~~ 311 (319)
|+.|+|.|++++
T Consensus 155 -g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 -DRKIEIKRAEPR 166 (167)
T ss_dssp -SSCEEEEECCCC
T ss_pred -CeEEEEeecCCC
Confidence 557999999875
No 12
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=1.2e-32 Score=228.97 Aligned_cols=188 Identities=22% Similarity=0.297 Sum_probs=142.0
Q ss_pred cceEEEeCCCC-CCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 68 VRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 68 ~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
.++|||+|||. ++++++|+++|+.||.|.+|++..+. +|||||+|.+.++|++|++.|+ .|+.|+|.+++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 48999999999 99999999999999999999998754 7899999999999999999888 8999999998765
Q ss_pred CcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 020954 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (319)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (319)
............ . ..+ .++... .. +.. .....
T Consensus 80 ~~~~~~~~~~~~-~-~~~--------------~~~~~~-----~~------------------r~~---------~~~~~ 111 (198)
T 1qm9_A 80 NVQLPREGQEDQ-G-LTK--------------DYGNSP-----LH------------------RFK---------KPGSK 111 (198)
T ss_dssp SCCCSSSSSSSS-S-CEE--------------ESSCCC-----TT------------------SSS---------SCCCC
T ss_pred CcCCCCcCCccc-c-ccc--------------cccCCc-----hh------------------hcc---------Ccccc
Confidence 422111000000 0 000 000000 00 000 00000
Q ss_pred CCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCC-CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCccc-CCCCC
Q 020954 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILY-SSPTS 300 (319)
Q Consensus 223 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG-~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~-~~~~G 300 (319)
......+++++|||+|||.++|+++|+++|++|| .|.+|++..+ ++++|||+|.+.++|.+|++.|||..++ ++
T Consensus 112 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~--- 187 (198)
T 1qm9_A 112 NFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENH--- 187 (198)
T ss_dssp CCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCC---
T ss_pred ccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCC---
Confidence 0011224578999999999999999999999999 9999999763 4689999999999999999999999998 44
Q ss_pred CeEEEEecCCC
Q 020954 301 DGIRLEFAKSR 311 (319)
Q Consensus 301 ~~i~V~~ak~~ 311 (319)
.|+|+|++++
T Consensus 188 -~l~v~~a~~~ 197 (198)
T 1qm9_A 188 -HLRVSFSKST 197 (198)
T ss_dssp -SCCEEEECCC
T ss_pred -eEEEEeeccc
Confidence 6999999875
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=8.7e-34 Score=231.09 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=135.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
..+.++|||+|||.++++++|+++|+.||.|..+.+... ++.++|||||+|.+.++|++|+ .|+ .|+.|+|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 345699999999999999999999999998766333322 7889999999999999999999 487 9999999988
Q ss_pred ccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 020954 140 KSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNS 219 (319)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (319)
+.....
T Consensus 89 ~~~~~~-------------------------------------------------------------------------- 94 (175)
T 1fje_B 89 KGRDSK-------------------------------------------------------------------------- 94 (175)
T ss_dssp CCSSCS--------------------------------------------------------------------------
T ss_pred CCcccc--------------------------------------------------------------------------
Confidence 753110
Q ss_pred CCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 220 SAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 220 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
.....++|||+|||.++|+++|+++|++||.|..+ ......++||||+|.+.++|.+|++.|||..|.
T Consensus 95 -------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---- 162 (175)
T 1fje_B 95 -------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---- 162 (175)
T ss_dssp -------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET----
T ss_pred -------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC----
Confidence 00136799999999999999999999999999888 333456789999999999999999999999999
Q ss_pred CCeEEEEecCCC
Q 020954 300 SDGIRLEFAKSR 311 (319)
Q Consensus 300 G~~i~V~~ak~~ 311 (319)
|+.|+|+|++.+
T Consensus 163 g~~i~v~~a~~k 174 (175)
T 1fje_B 163 GRSVSLYYTGEK 174 (175)
T ss_dssp TEEEEEEECSSC
T ss_pred CeEEEEEecCCC
Confidence 567999999876
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=7.8e-32 Score=223.78 Aligned_cols=175 Identities=15% Similarity=0.250 Sum_probs=135.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCC-----------CccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFP-----------GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KG 131 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-----------~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g 131 (319)
..++|||+|||.++|+++|+++|+.|| .|.++.+ ++++|||||+|.+.++|++|+ .|| .|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE----ETTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 459999999999999999999999995 4444444 567899999999999999999 788 99
Q ss_pred cEEEEEEcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 020954 132 STLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLI 211 (319)
Q Consensus 132 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 211 (319)
+.|+|.+++............. . ..+
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~-------------~------------~~~----------------------------- 103 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPS-------------V------------YVP----------------------------- 103 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSS-------------C------------CCT-----------------------------
T ss_pred ceEEEeCCCCCCCCCCCcCCCc-------------C------------CCC-----------------------------
Confidence 9999998865321110000000 0 000
Q ss_pred cccccCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHH
Q 020954 212 TTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALN 287 (319)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~ 287 (319)
...........++|||+|||.++|+++|+++|++||.|.+|++..+.. ++||||+|.+.++|.+|++
T Consensus 104 ---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 104 ---------GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp ---------TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHH
T ss_pred ---------CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 000001113478999999999999999999999999999999987532 4599999999999999999
Q ss_pred HhCCCcccCCCCCCeEEEEecCCCCC
Q 020954 288 NLQGTILYSSPTSDGIRLEFAKSRMG 313 (319)
Q Consensus 288 ~lnG~~i~~~~~G~~i~V~~ak~~~~ 313 (319)
.|||..|+ |+.|+|+|++.+..
T Consensus 175 ~l~g~~~~----g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 175 GLNGMQLG----DKKLLVQRASVGAK 196 (198)
T ss_dssp HHTTCEET----TEECEEEESCCCCC
T ss_pred HcCCCEEC----CEEEEEEECCCCCC
Confidence 99999999 56799999987643
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=9e-32 Score=218.41 Aligned_cols=151 Identities=17% Similarity=0.313 Sum_probs=130.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcC----C-------CccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREF----P-------GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KG 131 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g 131 (319)
+.++|||+|||.++|+++|+++|+.| | .|.++.+ ++++|||||+|.+.++|++|+ .++ .|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~----~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE----ETTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe----cCCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 45999999999999999999999999 6 5666666 456899999999999999999 787 99
Q ss_pred cEEEEEEcccCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 020954 132 STLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLI 211 (319)
Q Consensus 132 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 211 (319)
+.|+|.+++....
T Consensus 78 ~~i~v~~~~~~~~------------------------------------------------------------------- 90 (172)
T 2g4b_A 78 QSLKIRRPHDYQP------------------------------------------------------------------- 90 (172)
T ss_dssp EECEEECCSSCCC-------------------------------------------------------------------
T ss_pred ceeeecCCcccCC-------------------------------------------------------------------
Confidence 9999977653110
Q ss_pred cccccCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHH
Q 020954 212 TTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALN 287 (319)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~ 287 (319)
....++|||+|||.++|+++|+++|++||.|.+|++..+.. ++||||+|.+.++|.+|++
T Consensus 91 ----------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (172)
T 2g4b_A 91 ----------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 154 (172)
T ss_dssp ----------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHH
T ss_pred ----------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 01256899999999999999999999999999999987532 4599999999999999999
Q ss_pred HhCCCcccCCCCCCeEEEEecC
Q 020954 288 NLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 288 ~lnG~~i~~~~~G~~i~V~~ak 309 (319)
.|||..|+ |+.|+|+||.
T Consensus 155 ~l~g~~~~----g~~l~V~~As 172 (172)
T 2g4b_A 155 GLNGMQLG----DKKLLVQRAS 172 (172)
T ss_dssp HHTTCEET----TEECEEEECC
T ss_pred HcCCCEEC----CeEEEEEeCC
Confidence 99999999 5679999973
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=2.8e-31 Score=232.96 Aligned_cols=163 Identities=21% Similarity=0.232 Sum_probs=142.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.++|||+|||.++++++|+++|+.||.|..+.+..+ +|.++|||||+|.+.++|.+|+..|+ .|+.|+|.|+..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 389999999999999999999999999999998876 78899999999999999999999998 999999999875
Q ss_pred CCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 020954 142 NSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSA 221 (319)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (319)
.....
T Consensus 175 ~~~~~--------------------------------------------------------------------------- 179 (284)
T 3smz_A 175 GQLTP--------------------------------------------------------------------------- 179 (284)
T ss_dssp GGCCT---------------------------------------------------------------------------
T ss_pred CCCCc---------------------------------------------------------------------------
Confidence 32100
Q ss_pred CCCCCCCCCcCEEEEcCCCCCC-CHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 222 PSGPKNVTPCATLFVANLGPTC-TEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 222 ~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
.....++|||+|||.++ |+++|+++|+.||.|.+|++..+. .+++|||+|.+.++|.+|++.|||..|+
T Consensus 180 -----~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-- 252 (284)
T 3smz_A 180 -----ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG-- 252 (284)
T ss_dssp -----TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET--
T ss_pred -----ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC--
Confidence 00136789999999995 999999999999999999998743 3459999999999999999999999998
Q ss_pred CCCCeEEEEecCCCCCC
Q 020954 298 PTSDGIRLEFAKSRMGM 314 (319)
Q Consensus 298 ~~G~~i~V~~ak~~~~~ 314 (319)
|+.|+|+|++.+..+
T Consensus 253 --g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 253 --GSHLRVSFCAPGPPG 267 (284)
T ss_dssp --TEECEEEECCSSSCH
T ss_pred --CeEEEEEEecCCCcc
Confidence 668999999887543
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.2e-31 Score=236.32 Aligned_cols=164 Identities=23% Similarity=0.305 Sum_probs=136.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCC-CccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFP-GYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..++|||+|||.++++++|+++|+.|| .|..|.+..+ .+.++|||||+|.+.++|.+|+..|+ .|+.|+|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 358999999999999999999999999 9999999887 67889999999999999999999898 99999999987
Q ss_pred cCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 020954 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (319)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
......+..
T Consensus 196 ~~~~~~~~~----------------------------------------------------------------------- 204 (292)
T 2ghp_A 196 PLEKSKRTD----------------------------------------------------------------------- 204 (292)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CCccccccc-----------------------------------------------------------------------
Confidence 532211100
Q ss_pred CCCCCCCCCCcCEEEEcCCCCC-CCHHHHHHHhhcCCCceEEEEeecC-----CCCEEEEEecChHHHHHHHHHhCCCcc
Q 020954 221 APSGPKNVTPCATLFVANLGPT-CTEQELTQVFSKCPGFLKLKIQSTY-----GPPVAFVDFQDTVSSTAALNNLQGTIL 294 (319)
Q Consensus 221 ~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~~~-----~~~~aFV~F~~~~~A~~Al~~lnG~~i 294 (319)
......++|||+|||.+ +|+++|+++|+.||.|.+|++..+. .++||||+|.+.++|.+|+ .|||..|
T Consensus 205 -----~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~ 278 (292)
T 2ghp_A 205 -----SATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLL 278 (292)
T ss_dssp -------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEE
T ss_pred -----ccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 00123679999999999 9999999999999999999998743 3569999999999999999 9999999
Q ss_pred cCCCCCCeEEEEecCCC
Q 020954 295 YSSPTSDGIRLEFAKSR 311 (319)
Q Consensus 295 ~~~~~G~~i~V~~ak~~ 311 (319)
+ |+.|+|+|++++
T Consensus 279 ~----g~~i~V~~a~~k 291 (292)
T 2ghp_A 279 G----NREISVSLADKK 291 (292)
T ss_dssp T----TEEEEEEECCCC
T ss_pred C----CcEEEEEEecCC
Confidence 9 568999999975
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.5e-30 Score=225.41 Aligned_cols=154 Identities=24% Similarity=0.321 Sum_probs=135.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
....++|||+|||.++|+++|+++|+.||.|.+|.|. +++|||||+|.+.++|.+|+..++ .|+.|+|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 3455899999999999999999999999999999995 358999999999999999999888 89999998875
Q ss_pred cCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 020954 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (319)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
.
T Consensus 95 ~------------------------------------------------------------------------------- 95 (261)
T 3sde_A 95 H------------------------------------------------------------------------------- 95 (261)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 2
Q ss_pred CCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhC-CCcccC
Q 020954 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQ-GTILYS 296 (319)
Q Consensus 221 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~ln-G~~i~~ 296 (319)
+++|||+|||.++|+++|+++|+.||.|.+|++..+. +++||||+|.+.++|.+|++.|| |..+..
T Consensus 96 ----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 96 ----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp ----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred ----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 4489999999999999999999999999999998753 34599999999999999999995 555443
Q ss_pred CCCCCeEEEEecCCCC
Q 020954 297 SPTSDGIRLEFAKSRM 312 (319)
Q Consensus 297 ~~~G~~i~V~~ak~~~ 312 (319)
.. |++|.|.+++...
T Consensus 166 ~~-~r~i~v~~~~~~~ 180 (261)
T 3sde_A 166 TT-PRPVIVEPMEQFD 180 (261)
T ss_dssp SS-CCBCEEEECCCEE
T ss_pred CC-CceEEEeeccccC
Confidence 33 7899999998764
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=8.6e-31 Score=230.75 Aligned_cols=154 Identities=16% Similarity=0.268 Sum_probs=133.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..+.++|||+|||.++|+++|+++|+.||.|.+|+|..+...++|||||+|.+.++|++|++ ++ .|+.|.|.++.
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC
Confidence 44569999999999999999999999999999999998855578999999999999999995 77 88999997642
Q ss_pred cCCcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 020954 141 SNSRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSS 220 (319)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (319)
T Consensus 117 -------------------------------------------------------------------------------- 116 (292)
T 2ghp_A 117 -------------------------------------------------------------------------------- 116 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCC-CceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccC
Q 020954 221 APSGPKNVTPCATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYS 296 (319)
Q Consensus 221 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG-~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~ 296 (319)
.++|||+|||.++|+++|+++|+.|| .|.+|++..+. .++||||+|.+.++|.+|++.|||..|.
T Consensus 117 ----------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 185 (292)
T 2ghp_A 117 ----------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIE- 185 (292)
T ss_dssp ----------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEET-
T ss_pred ----------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 45899999999999999999999999 99999998743 5679999999999999999999999999
Q ss_pred CCCCCeEEEEecCCCCC
Q 020954 297 SPTSDGIRLEFAKSRMG 313 (319)
Q Consensus 297 ~~~G~~i~V~~ak~~~~ 313 (319)
|+.|+|.|+.....
T Consensus 186 ---g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 186 ---GYTLVTKVSNPLEK 199 (292)
T ss_dssp ---TEECEEEECCCC--
T ss_pred ---CcEEEEEECCCCcc
Confidence 56899999986543
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=7.4e-30 Score=223.89 Aligned_cols=149 Identities=20% Similarity=0.317 Sum_probs=134.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
+.++|||+|||.++|+++|+++|+.|| |.++.+ ++++|||||+|.+.++|++|++.++ .|+.|+|.++..
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~- 94 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT- 94 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC-
Confidence 358999999999999999999999999 998888 5678999999999999999999998 899999977431
Q ss_pred CcccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 020954 143 SRSKRSRTDDEWTGSDKKARGPSAFSRGTADLGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAP 222 (319)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (319)
T Consensus 95 -------------------------------------------------------------------------------- 94 (284)
T 3smz_A 95 -------------------------------------------------------------------------------- 94 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCC
Q 020954 223 SGPKNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSP 298 (319)
Q Consensus 223 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~ 298 (319)
.++|||+|||.++|+++|+++|+.||.|.+++++.+. ++|||||+|.+.++|.+|++.|||..++
T Consensus 95 --------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~--- 163 (284)
T 3smz_A 95 --------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG--- 163 (284)
T ss_dssp --------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred --------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC---
Confidence 4589999999999999999999999999999998654 3459999999999999999999999999
Q ss_pred CCCeEEEEecCCCCC
Q 020954 299 TSDGIRLEFAKSRMG 313 (319)
Q Consensus 299 ~G~~i~V~~ak~~~~ 313 (319)
|+.|+|.|+..+..
T Consensus 164 -g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 164 -PRTLYVHWTDAGQL 177 (284)
T ss_dssp -TEECEEEECCGGGC
T ss_pred -CcEEEEEECCCCCC
Confidence 56899999987653
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=2.5e-24 Score=172.15 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=74.4
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..++|||+|||.++|+++|+++|++||.|.+|++..+ ..+|||||+|.+.++|.+||+.|||..|. |+.|+|
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 144 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRELRV 144 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS----SSEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEE
Confidence 4779999999999999999999999999999999864 35679999999999999999999999999 568999
Q ss_pred EecCCCCCCCC
Q 020954 306 EFAKSRMGMPR 316 (319)
Q Consensus 306 ~~ak~~~~~~~ 316 (319)
+|++.+..+..
T Consensus 145 ~~a~~~~~~~~ 155 (158)
T 2kn4_A 145 QMARYGRPPDS 155 (158)
T ss_dssp EEECCSSCCCC
T ss_pred EECCCCCCCCC
Confidence 99998755443
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=3e-23 Score=164.39 Aligned_cols=140 Identities=19% Similarity=0.232 Sum_probs=109.9
Q ss_pred EEecCCCCCccEEEEEEcCHHHHHHHHHHc-C----CCcEEEEEEcccCCcccCCCCCCCCcccccccCCCCCCCCCCCC
Q 020954 99 HLRSSTQNSQPFAFAVFSDQQSALGAMYAL-N----KGSTLYIDLAKSNSRSKRSRTDDEWTGSDKKARGPSAFSRGTAD 173 (319)
Q Consensus 99 ~i~~~~~~~~g~afV~f~~~~~A~~A~~~l-~----~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (319)
.|..+..+.+|+++|+|.+.++|++|++.+ | .| .++++++..............
T Consensus 4 al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~-------------------- 62 (150)
T 2i2y_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHH-------------------- 62 (150)
T ss_dssp EEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCC--------------------
T ss_pred EeeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccccc--------------------
Confidence 455556678999999999999999999998 6 77 999988764322111000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCcCEEEEcCCCCCCCHHHHHHHhh
Q 020954 174 LGIGSVHMPGMGNSAFNTIGYPHTQSHENFDARGGSLITTAKFNNSSAPSGPKNVTPCATLFVANLGPTCTEQELTQVFS 253 (319)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 253 (319)
...........++|||+|||.++|+++|+++|+
T Consensus 63 -----------------------------------------------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~ 95 (150)
T 2i2y_A 63 -----------------------------------------------HHMHRDSCPLDCKVYVGNLGNNGNKTELERAFG 95 (150)
T ss_dssp -----------------------------------------------CCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHH
T ss_pred -----------------------------------------------ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 000001123477999999999999999999999
Q ss_pred cCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecCCC
Q 020954 254 KCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKSR 311 (319)
Q Consensus 254 ~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~~ 311 (319)
+||.|.+|++..+ +++||||+|.+.++|.+|++.|||..|. |+.|+|+|++.+
T Consensus 96 ~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~ 148 (150)
T 2i2y_A 96 YYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLC----GCRVRVELSNGE 148 (150)
T ss_dssp HHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSS----SSCCEEEECCCC
T ss_pred hhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEcCCC
Confidence 9999999999885 6789999999999999999999999998 557999999875
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=1.7e-23 Score=158.13 Aligned_cols=75 Identities=20% Similarity=0.407 Sum_probs=70.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
..+|||+|||.++|+++|+++|++||.|.+|+|..+.+.++|||||+|.+.++|++||+.|+ .|+.|+|++++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 47899999999999999999999999999999999877789999999999999999999999 9999999998753
No 24
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=139.20 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=71.8
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCc--ccCCCCCCeEEE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTI--LYSSPTSDGIRL 305 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~--i~~~~~G~~i~V 305 (319)
.+++++|||+|||+++|+++|+++|++||.|.+|++++ .++||||+|++.++|.+|++.|||.. |. ||+|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~----Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIA----GHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEET----TEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeC----CcEEEE
Confidence 34688999999999999999999999999999999985 56799999999999999999999986 56 668999
Q ss_pred EecCCCC
Q 020954 306 EFAKSRM 312 (319)
Q Consensus 306 ~~ak~~~ 312 (319)
+|++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998763
No 25
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.6e-21 Score=141.12 Aligned_cols=82 Identities=15% Similarity=0.204 Sum_probs=73.5
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCC--CcccCCCCCCeEEEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQG--TILYSSPTSDGIRLE 306 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG--~~i~~~~~G~~i~V~ 306 (319)
.+.++|||+|||+++|+++|+++|++||.|++|+|+.+ ++||||+|++.++|.+|++.|++ ..|. |++|+|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~----Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEET----TEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEEE
Confidence 35789999999999999999999999999999999974 68999999999999999999874 7888 6689999
Q ss_pred ecCCCCCCCC
Q 020954 307 FAKSRMGMPR 316 (319)
Q Consensus 307 ~ak~~~~~~~ 316 (319)
|++.+..++.
T Consensus 88 ~A~~~~~~~~ 97 (105)
T 1sjq_A 88 FSNHKELKTD 97 (105)
T ss_dssp CCSSSSCCCT
T ss_pred EcCCCCCCcc
Confidence 9998766553
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=7.1e-21 Score=139.50 Aligned_cols=77 Identities=25% Similarity=0.323 Sum_probs=70.3
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.+++|||+|||.++|+++|+++|++||.|.+|++..+.. +|||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----gr~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ----SKTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC----CEEEEE
Confidence 367899999999999999999999999999999987543 459999999999999999999999999 668999
Q ss_pred EecCC
Q 020954 306 EFAKS 310 (319)
Q Consensus 306 ~~ak~ 310 (319)
+||++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99974
No 27
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-20 Score=136.64 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=74.1
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHh--CCCcccCCCCCCeEEE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNL--QGTILYSSPTSDGIRL 305 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~l--nG~~i~~~~~G~~i~V 305 (319)
.+++++|||+|||.++|+++|+++|++||.|++|.++.+ ++||||+|++.++|.+|++.| ++..|. |++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLR----NQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEET----TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CcEEEE
Confidence 346889999999999999999999999999999999864 789999999999999999987 467788 668999
Q ss_pred EecCCCCCCCC
Q 020954 306 EFAKSRMGMPR 316 (319)
Q Consensus 306 ~~ak~~~~~~~ 316 (319)
+|++.+..++.
T Consensus 86 ~~a~~~~~~~~ 96 (101)
T 2cq1_A 86 QYSNHKELKTS 96 (101)
T ss_dssp EECSCSSCCCC
T ss_pred EEcCcccCcCC
Confidence 99998877654
No 28
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-20 Score=137.48 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=72.9
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCc--ccCCCCCCeEEE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTI--LYSSPTSDGIRL 305 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~--i~~~~~G~~i~V 305 (319)
.+++++|||+|||.++|+++|+++|++||.|.+|.++. .++||||+|++.++|.+|++.|||.. |. |+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~----Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIA----GQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSS----SSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEE
Confidence 34688999999999999999999999999999999986 46799999999999999999997754 77 668999
Q ss_pred EecCCCCCCC
Q 020954 306 EFAKSRMGMP 315 (319)
Q Consensus 306 ~~ak~~~~~~ 315 (319)
+|++.+..++
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9999876554
No 29
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=140.29 Aligned_cols=82 Identities=15% Similarity=0.204 Sum_probs=73.8
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCC--CcccCCCCCCeEEEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQG--TILYSSPTSDGIRLE 306 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG--~~i~~~~~G~~i~V~ 306 (319)
+++++|||+|||+++|+++|+++|++||.|++|+|+.+ ++||||+|++.++|.+|++.||+ ..|. |++|+|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~----Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBT----TBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CeEEEEE
Confidence 45889999999999999999999999999999999975 67999999999999999999984 6788 5679999
Q ss_pred ecCCCCCCCC
Q 020954 307 FAKSRMGMPR 316 (319)
Q Consensus 307 ~ak~~~~~~~ 316 (319)
|++.+..++.
T Consensus 103 ~a~~k~~~~~ 112 (119)
T 2ad9_A 103 FSNHKELKTD 112 (119)
T ss_dssp ECSSSSCCCC
T ss_pred EccCCCCCcc
Confidence 9998876653
No 30
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=136.58 Aligned_cols=74 Identities=24% Similarity=0.372 Sum_probs=70.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.++|||+|||.++|+++|+++|++||.|.+|+|..+ +|+++|||||+|.+.++|++|++.|| .|+.|+|+||+.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 478999999999999999999999999999999887 78999999999999999999999998 999999999974
No 31
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=2.1e-20 Score=141.09 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=72.0
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC--CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG--PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~--~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
+++|||+|||.++|+++|+++|++||.|.+|+|+.+.+ ++||||+|.+.++|++||+.|||..|. |+.|+|+|+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~----g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEEC
Confidence 56899999999999999999999999999999987543 569999999999999999999999999 567999999
Q ss_pred CCCCC
Q 020954 309 KSRMG 313 (319)
Q Consensus 309 k~~~~ 313 (319)
+.+..
T Consensus 81 ~~~~~ 85 (115)
T 4f25_A 81 KSRKE 85 (115)
T ss_dssp SCCCC
T ss_pred CCccc
Confidence 87644
No 32
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.9e-20 Score=134.58 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=75.4
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec--CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST--YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~--~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|++..+ ..++||||+|.+.++|.+|++.|||..|. |+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~ 88 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA----TKPLYVA 88 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEE
Confidence 35789999999999999999999999999999999975 34559999999999999999999999998 5579999
Q ss_pred ecCCCCCCCC
Q 020954 307 FAKSRMGMPR 316 (319)
Q Consensus 307 ~ak~~~~~~~ 316 (319)
|++.+..++.
T Consensus 89 ~a~~~~~~~~ 98 (103)
T 2d9p_A 89 LAQRKEERQS 98 (103)
T ss_dssp ECSSCCCCCC
T ss_pred EecccccCCC
Confidence 9998765543
No 33
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-19 Score=132.63 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=75.6
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC--CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~--~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..+.++|||+|||.++|+++|+++|++||.|.+|+|..+. .++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 87 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKIEV 87 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEE
Confidence 3457899999999999999999999999999999998753 3679999999999999999999999999 567999
Q ss_pred EecCCCCCCC
Q 020954 306 EFAKSRMGMP 315 (319)
Q Consensus 306 ~~ak~~~~~~ 315 (319)
.|++.+..+.
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cq3_A 88 NNATARVMTN 97 (103)
T ss_dssp EECCSSCCCC
T ss_pred EEcccCCCCC
Confidence 9999886554
No 34
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=134.77 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=74.6
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCC-CCCeEEEEec
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSP-TSDGIRLEFA 308 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~-~G~~i~V~~a 308 (319)
..++|||+|||.++|+++|+++|++||.|+.|+|..+ +||||+|.+.++|++||+.|||..|.+.. .++.|+|+|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 4789999999999999999999999999999999875 79999999999999999999999999410 0167999999
Q ss_pred CCCCCCCCC
Q 020954 309 KSRMGMPRK 317 (319)
Q Consensus 309 k~~~~~~~~ 317 (319)
+.+...+.+
T Consensus 91 ~~~~~~~~r 99 (108)
T 1x4c_A 91 GPRSPSYGR 99 (108)
T ss_dssp SCCSCCCCC
T ss_pred CCCCCCCCC
Confidence 987655543
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=132.88 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=74.9
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.++++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ----GRMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS----SCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 357899999999999999999999999999999998643 4579999999999999999999999999 56799
Q ss_pred EEecCCCCCCC
Q 020954 305 LEFAKSRMGMP 315 (319)
Q Consensus 305 V~~ak~~~~~~ 315 (319)
|+|++.+..+.
T Consensus 82 V~~a~~~~~~~ 92 (99)
T 1whw_A 82 VLPSTIKKEAS 92 (99)
T ss_dssp EEECCCCSTTC
T ss_pred EEEcCCCcccc
Confidence 99999886554
No 36
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=1.9e-19 Score=133.47 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=76.2
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC---CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG---PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~---~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|+|..+.. ++||||+|.+.++|.+||+.|||..+.+.. ++.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~-~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGA-SSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTC-SSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCC-CccEEE
Confidence 4578999999999999999999999999999999987543 459999999999999999999999998521 267999
Q ss_pred EecCCCCCCCC
Q 020954 306 EFAKSRMGMPR 316 (319)
Q Consensus 306 ~~ak~~~~~~~ 316 (319)
.|++.+..++.
T Consensus 92 ~~a~~~~~~~~ 102 (105)
T 2dnh_A 92 KFADTDKESGP 102 (105)
T ss_dssp EESCSSCCCSC
T ss_pred EECccCcccCC
Confidence 99998876553
No 37
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=134.24 Aligned_cols=83 Identities=27% Similarity=0.475 Sum_probs=74.3
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC-CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~-~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
.+.++|||+|||.++|+++|+++|++||.|..|++..+. .++||||+|.+.++|.+||+.|||..|. |+.|+|+|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~ 95 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD----GYRLRVEF 95 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET----TEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 457899999999999999999999999999999997643 3679999999999999999999999999 56799999
Q ss_pred cCCCCCCC
Q 020954 308 AKSRMGMP 315 (319)
Q Consensus 308 ak~~~~~~ 315 (319)
++.+...+
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4a_A 96 PRSGRGTG 103 (109)
T ss_dssp CCCCCCCC
T ss_pred cccCCCCC
Confidence 99865443
No 38
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=3.7e-20 Score=129.53 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=68.8
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
+..|||+||+..+|+++|+++|.+||.|.++++.. ++|||||+|.+.++|.+|++.|||..+. ||+|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~----gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLA----NTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEET----TEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEEC----CcEEEEEECC
Confidence 66899999999999999999999999999999986 6789999999999999999999999999 5679999995
No 39
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=132.84 Aligned_cols=85 Identities=24% Similarity=0.342 Sum_probs=76.2
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC--CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~--~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
....++|||+|||.++|+++|+++|++||.|.+|++..+. +++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 87 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL----GKEVKV 87 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET----TEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC----CCeEEE
Confidence 3457899999999999999999999999999999998743 4579999999999999999999999999 568999
Q ss_pred EecCCCCCCCC
Q 020954 306 EFAKSRMGMPR 316 (319)
Q Consensus 306 ~~ak~~~~~~~ 316 (319)
.|++.+..+++
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cqi_A 88 NWATTPSSQKS 98 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EECCCCccccc
Confidence 99998776554
No 40
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=3.3e-20 Score=138.29 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=72.0
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCC-CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG-~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
..++|||+|||+++|+++|+++|++|| .|..+++..+..+|||||+|.+.++|++||+.|||..|. |+.|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~----Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR----GSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET----TEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEC
Confidence 467999999999999999999999999 999999976567889999999999999999999999999 567999999
Q ss_pred CCCCCCC
Q 020954 309 KSRMGMP 315 (319)
Q Consensus 309 k~~~~~~ 315 (319)
+.+...|
T Consensus 103 ~~~p~~r 109 (111)
T 2jvr_A 103 DNPPPIR 109 (111)
T ss_dssp CC-----
T ss_pred CCCCCCC
Confidence 8775443
No 41
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=133.52 Aligned_cols=84 Identities=24% Similarity=0.296 Sum_probs=75.5
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD----GRQIR 85 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT----SCCCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 357899999999999999999999999999999998743 4669999999999999999999999999 55799
Q ss_pred EEecCCCCCCCC
Q 020954 305 LEFAKSRMGMPR 316 (319)
Q Consensus 305 V~~ak~~~~~~~ 316 (319)
|+|++.+...+.
T Consensus 86 v~~a~~~~~~~~ 97 (102)
T 1x5s_A 86 VDQAGKSSDNRS 97 (102)
T ss_dssp EEEEECCCCCCC
T ss_pred EEECCCCCCCCC
Confidence 999998876654
No 42
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=132.79 Aligned_cols=84 Identities=19% Similarity=0.225 Sum_probs=75.0
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
..+.++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 87 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY----GKPI 87 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS----SCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC----CeEE
Confidence 3457899999999999999999999999999999998743 4569999999999999999999999999 5579
Q ss_pred EEEecCCCCCCC
Q 020954 304 RLEFAKSRMGMP 315 (319)
Q Consensus 304 ~V~~ak~~~~~~ 315 (319)
+|+|++.+...+
T Consensus 88 ~v~~a~~~~~~~ 99 (105)
T 1x5u_A 88 RVNKASAHNKNL 99 (105)
T ss_dssp EEEETTTTSCCC
T ss_pred EEEECCCCCcCC
Confidence 999999876544
No 43
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=130.37 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=74.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
++++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA----GRPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS----SSCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 47899999999999999999999999999999998743 3569999999999999999999999999 557999
Q ss_pred EecCCCCCCC
Q 020954 306 EFAKSRMGMP 315 (319)
Q Consensus 306 ~~ak~~~~~~ 315 (319)
+|++.+....
T Consensus 80 ~~a~~~~~~~ 89 (95)
T 2dnz_A 80 GHVTERLDGG 89 (95)
T ss_dssp EESSCCCCCC
T ss_pred EEcccccCCC
Confidence 9999876554
No 44
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=9.9e-20 Score=135.27 Aligned_cols=80 Identities=6% Similarity=0.116 Sum_probs=70.8
Q ss_pred CCCcCEEEEcCCCCC-CCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCC--CcccCCCCCCeEE
Q 020954 228 VTPCATLFVANLGPT-CTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQG--TILYSSPTSDGIR 304 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG--~~i~~~~~G~~i~ 304 (319)
..++++|||+|||++ +|+++|+++|++||.|.+|+|.+ .++||||+|++.++|.+|++.||+ ..|. ||.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~----Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQ----GRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSS----SSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceEC----CEEEE
Confidence 446889999999998 99999999999999999999985 568999999999999999999865 4577 56799
Q ss_pred EEecCCCCC
Q 020954 305 LEFAKSRMG 313 (319)
Q Consensus 305 V~~ak~~~~ 313 (319)
|+|++.+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999987643
No 45
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=2.5e-20 Score=144.58 Aligned_cols=84 Identities=23% Similarity=0.295 Sum_probs=74.5
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
+.++|||+|||.++|+++|+++|++||.|..|++..+ ..++||||+|.+.++|++||+.|||..|. |+.|+|
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~----g~~l~V 121 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRELRV 121 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS----SSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 4678999999999999999999999999999999864 34669999999999999999999999999 557999
Q ss_pred EecCCCCCCCCC
Q 020954 306 EFAKSRMGMPRK 317 (319)
Q Consensus 306 ~~ak~~~~~~~~ 317 (319)
+|++.+...+.+
T Consensus 122 ~~a~~~~~~~~~ 133 (135)
T 2lea_A 122 QMARYGRPPDSH 133 (135)
T ss_dssp EECCCCCCCTTC
T ss_pred EECCCCCCCccc
Confidence 999987655443
No 46
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=130.96 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=74.4
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|+++.+. .++||||+|.+.++|.+||+ |||..|. |+.|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM----GKKVE 82 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS----SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC----CeEEE
Confidence 457899999999999999999999999999999998743 46799999999999999999 9999999 55799
Q ss_pred EEecCCCCCCCC
Q 020954 305 LEFAKSRMGMPR 316 (319)
Q Consensus 305 V~~ak~~~~~~~ 316 (319)
|.|++.+..++.
T Consensus 83 V~~a~~~~~~~~ 94 (99)
T 2dgs_A 83 VKRAEPRDSKSS 94 (99)
T ss_dssp EEECCCCCCCCC
T ss_pred EEECCCCcccCC
Confidence 999998766553
No 47
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=135.11 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=71.8
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
++.++|||+||+.++|+++|+++|++||.|.+|+|+.+.. +|||||+|++.++|.+|++.|||..|. |+.|+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~----gr~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM----GNIIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 3577999999999999999999999999999999987543 569999999999999999999999999 66899
Q ss_pred EEecCCC
Q 020954 305 LEFAKSR 311 (319)
Q Consensus 305 V~~ak~~ 311 (319)
|+|++..
T Consensus 80 V~~a~~~ 86 (110)
T 3s8s_A 80 AQLDIKG 86 (110)
T ss_dssp EEECSTT
T ss_pred EEECCCC
Confidence 9999764
No 48
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-20 Score=134.50 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=67.8
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCC--ceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCc----ccCCCCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPG--FLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTI----LYSSPTS 300 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~--i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~----i~~~~~G 300 (319)
-.+|||+|||+++|+++|+++|++||. |.+|+++.+ .++|||||+|.+.++|.+|++.|||.. |+ |
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~----G 84 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID----G 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET----T
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC----C
Confidence 458999999999999999999999995 678998764 346799999999999999999999974 77 6
Q ss_pred CeEEEEecCC
Q 020954 301 DGIRLEFAKS 310 (319)
Q Consensus 301 ~~i~V~~ak~ 310 (319)
|+|+|+||++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 6899999986
No 49
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-19 Score=130.53 Aligned_cols=80 Identities=23% Similarity=0.403 Sum_probs=72.3
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
.++++|||+|||.++|+++|+++|++||.|.+|++..+ ++||||+|.+.++|++|++.|||..|.+. |+.|+|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~--g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGP--DRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSS--SCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCC--CcEEEEEEC
Confidence 45789999999999999999999999999999999864 67999999999999999999999999932 347999999
Q ss_pred CCCC
Q 020954 309 KSRM 312 (319)
Q Consensus 309 k~~~ 312 (319)
+.+.
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9864
No 50
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=133.14 Aligned_cols=83 Identities=24% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 86 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD----GRELR 86 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT----TBCCE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC----CcEEE
Confidence 457899999999999999999999999999999998743 4679999999999999999999999999 55799
Q ss_pred EEecCCCCCCC
Q 020954 305 LEFAKSRMGMP 315 (319)
Q Consensus 305 V~~ak~~~~~~ 315 (319)
|+|++......
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dnm_A 87 VQVARYGRRDL 97 (103)
T ss_dssp EEECSSCCSCC
T ss_pred EEECCcCCCCC
Confidence 99999765443
No 51
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=5.7e-20 Score=133.25 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=70.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCC--ccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC--------CCc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPG--YESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN--------KGS 132 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~--------~g~ 132 (319)
...-.||||+|||+++|+++|+++|++||. |.+|+|.+| +++++|||||+|.+.++|++|++.|| .|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445699999999999999999999999995 678999887 78999999999999999999999987 599
Q ss_pred EEEEEEccc
Q 020954 133 TLYIDLAKS 141 (319)
Q Consensus 133 ~l~v~~a~~ 141 (319)
.|+|+||++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999985
No 52
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=129.46 Aligned_cols=79 Identities=27% Similarity=0.371 Sum_probs=72.3
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|++. ++||||+|.+.++|.+|++.|||..|. |+.|+|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLH----GVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccC----CcEEEEEEC
Confidence 357899999999999999999999999999999998 469999999999999999999999999 557999999
Q ss_pred CCCCCCC
Q 020954 309 KSRMGMP 315 (319)
Q Consensus 309 k~~~~~~ 315 (319)
+.+...+
T Consensus 78 ~~~~~~~ 84 (90)
T 2dnq_A 78 KNKSKAS 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 53
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.1e-19 Score=132.82 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=75.0
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec-----CCCCEEEEEecChHHHHHHHHHh-CCCcccCCCCCC
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST-----YGPPVAFVDFQDTVSSTAALNNL-QGTILYSSPTSD 301 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~-----~~~~~aFV~F~~~~~A~~Al~~l-nG~~i~~~~~G~ 301 (319)
....++|||+|||.++|+++|+++|++||.|..|++..+ ..++||||+|.+.++|.+||+.| ||..|. |+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~----g~ 87 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY----GR 87 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS----SC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC----CC
Confidence 345789999999999999999999999999999999865 23669999999999999999999 999999 55
Q ss_pred eEEEEecCCCCCCC
Q 020954 302 GIRLEFAKSRMGMP 315 (319)
Q Consensus 302 ~i~V~~ak~~~~~~ 315 (319)
.|+|+|++.+....
T Consensus 88 ~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 88 RLVLEWADSEVTVQ 101 (107)
T ss_dssp BCEEEECCCCCCCC
T ss_pred EEEEEeCCCCCCCC
Confidence 79999999876554
No 54
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.4e-20 Score=134.04 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=69.7
Q ss_pred CcCEEEEcCCCC-CCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCc--ccCCCCCCeEEEE
Q 020954 230 PCATLFVANLGP-TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTI--LYSSPTSDGIRLE 306 (319)
Q Consensus 230 ~~~~l~V~nLp~-~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~--i~~~~~G~~i~V~ 306 (319)
++++|||+|||+ ++|+++|+++|++||.|.+|+|+.+ ++||||+|++.++|.+|++.|||.. |. |++|+|+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK--INEAFIEMATTEDAQAAVDYYTTTPALVF----GKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS--SSCEEEEESSHHHHHHHHHHHHHSCCEET----TEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHHcCCCceEC----CcEEEEE
Confidence 588999999999 9999999999999999999999864 4799999999999999999999754 77 6689999
Q ss_pred ecCCCC
Q 020954 307 FAKSRM 312 (319)
Q Consensus 307 ~ak~~~ 312 (319)
||+...
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 999643
No 55
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=131.31 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=72.0
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
...++|||+|||.++|+++|+++|++||.|. ++++.+..++||||+|.+.++|.+|++.|||..|. |+.|+|+|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG----TDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS----SSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEc
Confidence 3478999999999999999999999999997 77777778899999999999999999999999999 557999999
Q ss_pred CCCC
Q 020954 309 KSRM 312 (319)
Q Consensus 309 k~~~ 312 (319)
+.+.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8753
No 56
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=135.78 Aligned_cols=82 Identities=22% Similarity=0.311 Sum_probs=74.1
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
..++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 81 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH----GKAIKVE 81 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS----SSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEEE
Confidence 46799999999999999999999999999999998754 4579999999999999999999999999 5579999
Q ss_pred ecCCCCCCC
Q 020954 307 FAKSRMGMP 315 (319)
Q Consensus 307 ~ak~~~~~~ 315 (319)
|++.+....
T Consensus 82 ~a~~~~~~~ 90 (116)
T 2fy1_A 82 QAKKPSFQS 90 (116)
T ss_dssp ECCCSSCSS
T ss_pred ECCCCCCCC
Confidence 999876543
No 57
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=1.7e-19 Score=133.38 Aligned_cols=81 Identities=27% Similarity=0.402 Sum_probs=73.4
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|++.+ +||||+|.+.++|.+|++.|||..|. |+.|+|+|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLE----GENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEET----TEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccC----CCEEEEEEc
Confidence 3578999999999999999999999999999999874 49999999999999999999999999 567999999
Q ss_pred CCCCCCCCC
Q 020954 309 KSRMGMPRK 317 (319)
Q Consensus 309 k~~~~~~~~ 317 (319)
+.+..+++.
T Consensus 81 ~~~~~~~~~ 89 (103)
T 2dgu_A 81 KPPDQKRKE 89 (103)
T ss_dssp CCCCCCCCC
T ss_pred CCCcccchh
Confidence 988765544
No 58
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=131.70 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=73.3
Q ss_pred CcCEEEEcCCCCCCCHHHHH----HHhhcCCCceEEEEeecCC-CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 230 PCATLFVANLGPTCTEQELT----QVFSKCPGFLKLKIQSTYG-PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~----~~F~~fG~i~~v~i~~~~~-~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
..++|||+|||.++++++|+ ++|++||.|.+|++..+.. ++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~----gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG----SKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 46799999999999999999 9999999999999986432 679999999999999999999999999 56799
Q ss_pred EEecCCCCCC
Q 020954 305 LEFAKSRMGM 314 (319)
Q Consensus 305 V~~ak~~~~~ 314 (319)
|+|++.+..+
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999887544
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=130.11 Aligned_cols=77 Identities=26% Similarity=0.349 Sum_probs=70.5
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
++.++|||+|||.++++++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 89 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF----GRVIK 89 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET----TEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC----CcEEE
Confidence 457899999999999999999999999999999998743 4569999999999999999999999999 56799
Q ss_pred EEecC
Q 020954 305 LEFAK 309 (319)
Q Consensus 305 V~~ak 309 (319)
|+|||
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99986
No 60
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-20 Score=133.91 Aligned_cols=79 Identities=11% Similarity=0.203 Sum_probs=69.5
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCC-CceEEEEeec----CCCCEEEEEecChHHHHHHHHHhC-CCcccCCCCCCeEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCP-GFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQ-GTILYSSPTSDGIR 304 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG-~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~ln-G~~i~~~~~G~~i~ 304 (319)
+++|||+|||.++|+++|+++|++|| .|.+|+|+.+ .++|||||+|.+.++|.+||+.|+ +..++ |+.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~----gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL----GQKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET----TEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC----CEEEE
Confidence 46899999999999999999999999 8999999864 356799999999999999999884 56788 66899
Q ss_pred EEecCCCCC
Q 020954 305 LEFAKSRMG 313 (319)
Q Consensus 305 V~~ak~~~~ 313 (319)
|+||+++..
T Consensus 77 V~~a~~~~~ 85 (91)
T 2lxi_A 77 MHYSDPKPK 85 (91)
T ss_dssp EECCCSCCC
T ss_pred EEEcCCCCC
Confidence 999987643
No 61
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=129.39 Aligned_cols=78 Identities=14% Similarity=0.246 Sum_probs=71.8
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC-----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~-----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID----GQEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC----CeEEEE
Confidence 6789999999999999999999999999999998754 6779999999999999999999999999 567999
Q ss_pred EecCCCC
Q 020954 306 EFAKSRM 312 (319)
Q Consensus 306 ~~ak~~~ 312 (319)
+|++.+.
T Consensus 80 ~~a~~~~ 86 (88)
T 4a8x_A 80 TAVLAPW 86 (88)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9998653
No 62
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=1.7e-19 Score=131.52 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=72.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
++++|||+|||.++++++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|+ |+.|+|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG----SRFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEE
Confidence 36799999999999999999999999999999998753 3679999999999999999999999999 557999
Q ss_pred EecCCCC
Q 020954 306 EFAKSRM 312 (319)
Q Consensus 306 ~~ak~~~ 312 (319)
+|++.+.
T Consensus 77 ~~a~~~~ 83 (96)
T 2x1f_A 77 GYSSNSD 83 (96)
T ss_dssp EECSCSS
T ss_pred EEcCCCC
Confidence 9999864
No 63
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=5.4e-20 Score=132.71 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=69.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCC-CccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC-----CCcEEEEEEc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFP-GYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLA 139 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~-----~g~~l~v~~a 139 (319)
+++|||+|||.++|+++|+++|++|| .|.+|+|+++ ++.++|||||+|.+.++|++|++.++ .|+.|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 37999999999999999999999999 7999999887 78999999999999999999998774 8999999999
Q ss_pred ccC
Q 020954 140 KSN 142 (319)
Q Consensus 140 ~~~ 142 (319)
+.+
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 64
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=132.61 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=75.5
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhC------CCcccCC
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQ------GTILYSS 297 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~ln------G~~i~~~ 297 (319)
..+.++|||+|||.++|+++|+++|++||.|.+|+|..+ ..++||||+|.+.++|.+||+.|| |..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~-- 89 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD-- 89 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc--
Confidence 345789999999999999999999999999999999864 346799999999999999999999 99999
Q ss_pred CCCCeEEEEecCCCCCCCC
Q 020954 298 PTSDGIRLEFAKSRMGMPR 316 (319)
Q Consensus 298 ~~G~~i~V~~ak~~~~~~~ 316 (319)
|+.|+|+|++.+....+
T Consensus 90 --g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 90 --GRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp --SCEEEEECCCCCCCCCC
T ss_pred --CEEEEEEECCCCccCCC
Confidence 56799999998755443
No 65
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=7.7e-20 Score=139.73 Aligned_cols=82 Identities=16% Similarity=0.318 Sum_probs=72.8
Q ss_pred CCCcCEEEEcCCCCCCCHHHHH----HHhhcCCCceEEEEee-cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCe
Q 020954 228 VTPCATLFVANLGPTCTEQELT----QVFSKCPGFLKLKIQS-TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDG 302 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~fG~i~~v~i~~-~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~ 302 (319)
..++++|||+||+.++++++|+ ++|++||.|.+|.+.. ...+|||||+|.+.++|.+|++.|||..|. |++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~----gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ----GNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT----TSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC----CCE
Confidence 3457899999999999999876 7999999999999875 356789999999999999999999999999 557
Q ss_pred EEEEecCCCCC
Q 020954 303 IRLEFAKSRMG 313 (319)
Q Consensus 303 i~V~~ak~~~~ 313 (319)
|+|+|++.+..
T Consensus 102 l~V~~a~~~~~ 112 (127)
T 2a3j_A 102 LVITFSETPQS 112 (127)
T ss_dssp CEEEECCCCCH
T ss_pred EEEEEccCcch
Confidence 99999998753
No 66
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=1.6e-19 Score=134.46 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=71.8
Q ss_pred CCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 227 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
...+.++|||+|||.++|+++|+++|++||.|.+|++. ++||||+|.+.++|.+|++.|||..|. |+.|+|+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA----NQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET----TEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEE
Confidence 34568899999999999999999999999999999998 679999999999999999999999998 6689999
Q ss_pred ecCCCCCC
Q 020954 307 FAKSRMGM 314 (319)
Q Consensus 307 ~ak~~~~~ 314 (319)
|++.+..+
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99986543
No 67
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=4.9e-19 Score=133.53 Aligned_cols=85 Identities=19% Similarity=0.343 Sum_probs=75.6
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
..+.++|||+|||.++|+++|+++|++||.|.+|+|..+.. ++||||+|.+.++|++||+.|||..|. |+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 87 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQI 87 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET----TEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 34578999999999999999999999999999999987532 459999999999999999999999999 5579
Q ss_pred EEEecCCCCCCCC
Q 020954 304 RLEFAKSRMGMPR 316 (319)
Q Consensus 304 ~V~~ak~~~~~~~ 316 (319)
+|.|++.+...++
T Consensus 88 ~V~~a~~~~~~~~ 100 (115)
T 2dgo_A 88 RTNWATRKPPAPK 100 (115)
T ss_dssp EEEESSCCCCCSC
T ss_pred EEEEccCCCCCCc
Confidence 9999998765543
No 68
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=134.36 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=71.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.++|||+||++++++++|+++|++||.|.+|+|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|+++..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 499999999999999999999999999999999887 68999999999999999999999999 999999999865
Q ss_pred C
Q 020954 142 N 142 (319)
Q Consensus 142 ~ 142 (319)
.
T Consensus 86 ~ 86 (110)
T 3s8s_A 86 G 86 (110)
T ss_dssp T
T ss_pred C
Confidence 4
No 69
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=132.31 Aligned_cols=82 Identities=23% Similarity=0.336 Sum_probs=73.7
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC-------CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCe
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-------GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDG 302 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~-------~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~ 302 (319)
+.++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD----GHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET----TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 47799999999999999999999999999999998643 3469999999999999999999999999 557
Q ss_pred EEEEecCCCCCCC
Q 020954 303 IRLEFAKSRMGMP 315 (319)
Q Consensus 303 i~V~~ak~~~~~~ 315 (319)
|+|+|++.+...+
T Consensus 80 l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 80 LEVRISERATKPA 92 (98)
T ss_dssp CEEECSSCSSCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999999876554
No 70
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=130.25 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=73.3
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
..+.++|||+|||.++|+++|+++|++||.|.+|++.. .++||||+|.+.++|.+|++.|||..|. |+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLR----GKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBT----TBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeC----CceEEEEE
Confidence 34578999999999999999999999999999999986 4679999999999999999999999999 55799999
Q ss_pred cCCCCCC
Q 020954 308 AKSRMGM 314 (319)
Q Consensus 308 ak~~~~~ 314 (319)
++.+...
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9986543
No 71
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.80 E-value=2.7e-19 Score=141.11 Aligned_cols=81 Identities=27% Similarity=0.317 Sum_probs=72.9
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKS 310 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~ 310 (319)
..+|||+||++++|+++|+++|++||.|++|++..+..++||||+|++.++|.+|++.|||+.|.+. |+.|+|+|++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~--g~~L~V~~Ak~ 123 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDFSKL 123 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS--CSCEEEEECSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC--CcEEEEEEecC
Confidence 4568999999999999999999999999999998765667999999999999999999999999753 46799999998
Q ss_pred CCC
Q 020954 311 RMG 313 (319)
Q Consensus 311 ~~~ 313 (319)
+..
T Consensus 124 ~~l 126 (164)
T 1sjr_A 124 TSL 126 (164)
T ss_dssp SSC
T ss_pred Ccc
Confidence 743
No 72
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=4.9e-19 Score=133.56 Aligned_cols=84 Identities=20% Similarity=0.308 Sum_probs=74.7
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
.++.++|||+|||.++|+++|+++|++||.|++|+|..+.. ++||||+|.+.++|.+||+.|||..|. |+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 97 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG----MKRL 97 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC----CEEE
Confidence 34578999999999999999999999999999999987542 359999999999999999999999999 5679
Q ss_pred EEEecCCCCCCC
Q 020954 304 RLEFAKSRMGMP 315 (319)
Q Consensus 304 ~V~~ak~~~~~~ 315 (319)
+|+|++.+...+
T Consensus 98 ~V~~a~~~~~~~ 109 (115)
T 2cpz_A 98 KVQLKRSKNDSK 109 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEEcCCCCcCC
Confidence 999999875543
No 73
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=134.31 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=73.8
Q ss_pred CCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC--CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 227 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~--~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.....++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|+ |+.|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 34467899999999999999999999999999999998643 4679999999999999999999999999 56799
Q ss_pred EEecCCCC
Q 020954 305 LEFAKSRM 312 (319)
Q Consensus 305 V~~ak~~~ 312 (319)
|+|++.+.
T Consensus 101 V~~a~~~~ 108 (109)
T 2err_A 101 VNNATARV 108 (109)
T ss_dssp EEECCCSC
T ss_pred EEECCCCc
Confidence 99998763
No 74
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-19 Score=130.43 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=75.0
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
..+.++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 87 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD----HLIL 87 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET----TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC----CcEE
Confidence 3457899999999999999999999999999999998753 2459999999999999999999999999 5579
Q ss_pred EEEecCCCCCCC
Q 020954 304 RLEFAKSRMGMP 315 (319)
Q Consensus 304 ~V~~ak~~~~~~ 315 (319)
+|+|++.+....
T Consensus 88 ~v~~a~~~~~~~ 99 (103)
T 2cq0_A 88 NVEWAKPSTNSG 99 (103)
T ss_dssp EEEESSCCCCSC
T ss_pred EEEECCCCCCCC
Confidence 999999876554
No 75
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=9.6e-19 Score=128.52 Aligned_cols=82 Identities=17% Similarity=0.340 Sum_probs=73.4
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
..+.++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK----ENIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS----SCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC----CEEEE
Confidence 3457899999999999999999999999999999998754 2359999999999999999999999999 55799
Q ss_pred EEecCCCCC
Q 020954 305 LEFAKSRMG 313 (319)
Q Consensus 305 V~~ak~~~~ 313 (319)
|+|++.+..
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999997643
No 76
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=133.52 Aligned_cols=82 Identities=18% Similarity=0.310 Sum_probs=74.9
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
...++|||+|||.++|+++|+++|++||.|.+|++..+ ++||||+|.+.++|.+|++.|||..|. |+.|+|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIE----GHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEET----TEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEEC----CcEEEEEec
Confidence 35789999999999999999999999999999999975 679999999999999999999999999 567999999
Q ss_pred CCCCCCCC
Q 020954 309 KSRMGMPR 316 (319)
Q Consensus 309 k~~~~~~~ 316 (319)
+.+...++
T Consensus 97 ~~~~~~~~ 104 (109)
T 1x4g_A 97 KESPDMTS 104 (109)
T ss_dssp CCCCSSCC
T ss_pred CCCCCCCC
Confidence 98765543
No 77
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-18 Score=135.69 Aligned_cols=85 Identities=24% Similarity=0.301 Sum_probs=75.9
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
....++|||+|||.++|+++|+++|+.||.|++|+++.+.. ++||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 114 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL----NKRL 114 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS----SCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeEE
Confidence 34578999999999999999999999999999999987543 569999999999999999999999999 5579
Q ss_pred EEEecCCCCCCCC
Q 020954 304 RLEFAKSRMGMPR 316 (319)
Q Consensus 304 ~V~~ak~~~~~~~ 316 (319)
+|+|++.+..++.
T Consensus 115 ~v~~a~~~~~~~~ 127 (139)
T 1u6f_A 115 KVALAASGHQRPG 127 (139)
T ss_dssp EEEESSCCCCCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999998765543
No 78
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=128.06 Aligned_cols=78 Identities=19% Similarity=0.331 Sum_probs=69.6
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
+.++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 80 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQIRT 80 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEE
Confidence 47799999999999999999999999999999998753 2459999999999999999999999999 567999
Q ss_pred EecCCC
Q 020954 306 EFAKSR 311 (319)
Q Consensus 306 ~~ak~~ 311 (319)
+|++.+
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 999875
No 79
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=3.7e-19 Score=132.20 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=74.6
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
..+.++|||+|||.++|+++|+++|++||.|.+|+++.+. .++||||+|.+.++|.+|++.|||..+.... |+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~-g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM-NRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC-SSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC-CceE
Confidence 3457899999999999999999999999999999998743 4679999999999999999999999872111 6689
Q ss_pred EEEecCCCCCCC
Q 020954 304 RLEFAKSRMGMP 315 (319)
Q Consensus 304 ~V~~ak~~~~~~ 315 (319)
+|.|++.+..++
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999999876544
No 80
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=7.1e-19 Score=133.29 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=71.0
Q ss_pred CCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCe
Q 020954 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDG 302 (319)
Q Consensus 227 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~ 302 (319)
...+.++|||+|||.++|+++|+++|++||.|.+|++..+ ..++||||+|.+.++|.+|++.|||..|+ |+.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 111 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG----TKR 111 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 3456789999999999999999999999999999999864 34679999999999999999999999999 557
Q ss_pred EEEEecC
Q 020954 303 IRLEFAK 309 (319)
Q Consensus 303 i~V~~ak 309 (319)
|+|+|+|
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999986
No 81
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=3.4e-19 Score=126.86 Aligned_cols=77 Identities=26% Similarity=0.426 Sum_probs=70.2
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+.++|||+|||.++++++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 357899999999999999999999999999999997642 4569999999999999999999999999 56799
Q ss_pred EEecC
Q 020954 305 LEFAK 309 (319)
Q Consensus 305 V~~ak 309 (319)
|+|||
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99986
No 82
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=131.41 Aligned_cols=85 Identities=22% Similarity=0.306 Sum_probs=75.9
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|++..+ ..++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 35789999999999999999999999999999999764 34679999999999999999999999999 56799
Q ss_pred EEecCCCCCCCCC
Q 020954 305 LEFAKSRMGMPRK 317 (319)
Q Consensus 305 V~~ak~~~~~~~~ 317 (319)
|+|++.+..++..
T Consensus 86 V~~a~~~~~~~~~ 98 (102)
T 2cqb_A 86 VNLAKPMRIKESG 98 (102)
T ss_dssp EEECCCCCCCCCC
T ss_pred EEeCCCCCCCCCC
Confidence 9999988766543
No 83
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=132.67 Aligned_cols=78 Identities=26% Similarity=0.439 Sum_probs=72.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecCCC
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAKSR 311 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak~~ 311 (319)
++|||+|||.++|+++|+++|++||.|.+|++..+ .++||||+|.+.++|.+|++.|||..+. |+.|+|+|++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVIC----GSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSS----SCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeEC----CcEEEEEEccCC
Confidence 47999999999999999999999999999999986 6789999999999999999999999999 557999999987
Q ss_pred CCC
Q 020954 312 MGM 314 (319)
Q Consensus 312 ~~~ 314 (319)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 84
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.4e-19 Score=128.16 Aligned_cols=79 Identities=28% Similarity=0.263 Sum_probs=71.6
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
..++++|||+|||.++|+++|+++|++||.|.+|++..+.. ++||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 87 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRRI 87 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 34688999999999999999999999999999999987533 459999999999999999999999999 5679
Q ss_pred EEEecCC
Q 020954 304 RLEFAKS 310 (319)
Q Consensus 304 ~V~~ak~ 310 (319)
+|+|+++
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999985
No 85
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=125.48 Aligned_cols=74 Identities=20% Similarity=0.337 Sum_probs=65.4
Q ss_pred CcCE-EEEcCCCCCCCHHH----HHHHhhcCC-CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 230 PCAT-LFVANLGPTCTEQE----LTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 230 ~~~~-l~V~nLp~~~t~~~----L~~~F~~fG-~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
++.| |||+|||+++++++ |+++|++|| .|.+|. .|+|||+|.+.++|.+|++.|||+.+. ||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~----gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVF----GNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSS----SSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccC----CceE
Confidence 4556 99999999999988 558999994 999982 289999999999999999999999999 5579
Q ss_pred EEEecCCCCC
Q 020954 304 RLEFAKSRMG 313 (319)
Q Consensus 304 ~V~~ak~~~~ 313 (319)
+|+||+.+..
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999998753
No 86
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=7.6e-19 Score=131.41 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=71.4
Q ss_pred CCcCEEEEcCCCCC-CCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 229 TPCATLFVANLGPT-CTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 229 ~~~~~l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
..+++|||+|||.+ +|+++|+++|++||.|.+|++ .++||||+|.+.++|.+|++.|||..|. |+.|+|+|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLA----GQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEET----TEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 34689999999999 999999999999999999999 4579999999999999999999999999 56799999
Q ss_pred cCCCCCCC
Q 020954 308 AKSRMGMP 315 (319)
Q Consensus 308 ak~~~~~~ 315 (319)
++.+...+
T Consensus 97 a~~~~~~~ 104 (110)
T 1wf1_A 97 AGEPKPDR 104 (110)
T ss_dssp SCCCCSCC
T ss_pred CCCCCCCC
Confidence 98655444
No 87
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=130.21 Aligned_cols=83 Identities=25% Similarity=0.351 Sum_probs=74.4
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEE-EEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKL-KIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v-~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
++++|||+|||.++|+++|+++|++||.|.+| ++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC----NRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET----TEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 47899999999999999999999999999999 887642 4569999999999999999999999999 56899
Q ss_pred EEecCCCCCCCC
Q 020954 305 LEFAKSRMGMPR 316 (319)
Q Consensus 305 V~~ak~~~~~~~ 316 (319)
|+|++.+..++.
T Consensus 80 v~~a~~~~~~~~ 91 (96)
T 1x5t_A 80 VSYAFKKDSKGS 91 (96)
T ss_dssp EEESCCCCCCCC
T ss_pred EEEecccCCCCC
Confidence 999998765554
No 88
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=5.4e-19 Score=125.19 Aligned_cols=77 Identities=22% Similarity=0.387 Sum_probs=70.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
.+|||+|||.++|+++|+++|++||.|.+|++..+.. ++||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC----CcEEEEEe
Confidence 5899999999999999999999999999999987533 459999999999999999999999999 56899999
Q ss_pred cCCCC
Q 020954 308 AKSRM 312 (319)
Q Consensus 308 ak~~~ 312 (319)
++.+.
T Consensus 78 a~~~~ 82 (83)
T 3md1_A 78 AAKLE 82 (83)
T ss_dssp CCCCC
T ss_pred cCcCC
Confidence 98753
No 89
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-19 Score=130.39 Aligned_cols=82 Identities=22% Similarity=0.282 Sum_probs=73.3
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC-----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~-----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
.+.++|||+|||.++|+++|+++|+.|| |.+|+|+.+. .++||||+|.+.++|.+|| .|||..|. |+.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l 86 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----NKRI 86 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET----TEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC----CcEE
Confidence 4578999999999999999999999999 9999998653 3569999999999999999 99999999 5679
Q ss_pred EEEecCCCCCCCC
Q 020954 304 RLEFAKSRMGMPR 316 (319)
Q Consensus 304 ~V~~ak~~~~~~~ 316 (319)
+|+|++.+..+++
T Consensus 87 ~V~~a~~~~~~~~ 99 (104)
T 1wi8_A 87 RVDVADQAQDKDS 99 (104)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEccCCCCCCC
Confidence 9999998876554
No 90
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.9e-19 Score=127.24 Aligned_cols=79 Identities=25% Similarity=0.442 Sum_probs=71.9
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|++.++ ||||+|.+.++|.+|++.|||..|. |+.|+|+|+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ----GKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEET----TEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeC----CcEEEEEEc
Confidence 45789999999999999999999999999999999853 9999999999999999999999999 567999999
Q ss_pred CCCCCCC
Q 020954 309 KSRMGMP 315 (319)
Q Consensus 309 k~~~~~~ 315 (319)
+.+....
T Consensus 80 ~~~~~~~ 86 (92)
T 2dgt_A 80 TSRLRTA 86 (92)
T ss_dssp SCCCSCC
T ss_pred cCCCCCC
Confidence 9875443
No 91
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2e-19 Score=132.43 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=71.1
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
..+++|||+|||.++|+++|+++|++||.|.+|++. ..++||||+|.+.++|.+|++.|||..|. |+.|+|+|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQ----GRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEET----TEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEec
Confidence 347899999999999999999999999999999998 46789999999999999999999999999 557999999
Q ss_pred CCC
Q 020954 309 KSR 311 (319)
Q Consensus 309 k~~ 311 (319)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 92
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=4.3e-19 Score=136.42 Aligned_cols=81 Identities=27% Similarity=0.318 Sum_probs=73.2
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
..++++|||+|||.++|+++|+++|++||.|.+|++..+ ..++||||+|.+.++|.+||+.|||..|. |+.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~----g~~l 118 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRRI 118 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS----SSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 346789999999999999999999999999999999864 45679999999999999999999999999 5579
Q ss_pred EEEecCCCC
Q 020954 304 RLEFAKSRM 312 (319)
Q Consensus 304 ~V~~ak~~~ 312 (319)
+|+|++.+.
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999998753
No 93
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=130.20 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=73.9
Q ss_pred CCCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCC
Q 020954 226 KNVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSD 301 (319)
Q Consensus 226 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~ 301 (319)
....+.++|||+|||.++|+++|+++|++||.|.+|++..+.. ++||||+|.+.++|.+|++.|||..|. |+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~----g~ 96 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA----GR 96 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS----SS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 3345678999999999999999999999999999999987533 459999999999999999999999999 55
Q ss_pred eEEEEecCCCC
Q 020954 302 GIRLEFAKSRM 312 (319)
Q Consensus 302 ~i~V~~ak~~~ 312 (319)
.|+|+|++.+.
T Consensus 97 ~l~V~~a~~k~ 107 (108)
T 2jrs_A 97 PMKVGHVTERT 107 (108)
T ss_dssp CCEEECSCSSC
T ss_pred EEEEEEcccCC
Confidence 79999998764
No 94
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=126.63 Aligned_cols=76 Identities=20% Similarity=0.343 Sum_probs=70.0
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHh-CCCcccCCCCCCeEEEE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNL-QGTILYSSPTSDGIRLE 306 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~l-nG~~i~~~~~G~~i~V~ 306 (319)
....++|||+|||.++|+++|+++|++||.|.+|++..+ ++||||+|.+.++|.+|++.| ||..+. |+.|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~----g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVN----GRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEET----TEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeEC----CCEEEEE
Confidence 345789999999999999999999999999999999973 679999999999999999999 999999 5579999
Q ss_pred ecC
Q 020954 307 FAK 309 (319)
Q Consensus 307 ~ak 309 (319)
|+|
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 986
No 95
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=132.16 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=72.6
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.++++|||+|||.++|+++|+++|++||.|.+|++..+.. ++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 96 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQPIS 96 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS----SSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC----CcEEE
Confidence 4578999999999999999999999999999999987543 469999999999999999999999999 55799
Q ss_pred EEecCCCC
Q 020954 305 LEFAKSRM 312 (319)
Q Consensus 305 V~~ak~~~ 312 (319)
|+|++.+.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99998764
No 96
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.3e-19 Score=132.93 Aligned_cols=84 Identities=24% Similarity=0.421 Sum_probs=75.4
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCc----eEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGF----LKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i----~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.++++|||+|||.++|+++|+++|++||.| ..+++.....++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY----GKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS----SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 457899999999999999999999999998 6777777677889999999999999999999999998 56799
Q ss_pred EEecCCCCCCCC
Q 020954 305 LEFAKSRMGMPR 316 (319)
Q Consensus 305 V~~ak~~~~~~~ 316 (319)
|+|++.+..++.
T Consensus 99 v~~a~~~~~~~~ 110 (115)
T 2cpx_A 99 IEFGKNKKQRSS 110 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEccCCCCCCC
Confidence 999998765543
No 97
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=127.59 Aligned_cols=79 Identities=23% Similarity=0.393 Sum_probs=72.1
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|++.+ +||||+|.+.++|.+|++.|||..|. |+.|+|+|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVK----GKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 3578999999999999999999999999999999985 39999999999999999999999999 567999999
Q ss_pred CCCCCCC
Q 020954 309 KSRMGMP 315 (319)
Q Consensus 309 k~~~~~~ 315 (319)
+.+..++
T Consensus 79 ~~~~~~~ 85 (90)
T 2dnp_A 79 TKGQKKS 85 (90)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9875544
No 98
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=5.9e-19 Score=127.59 Aligned_cols=82 Identities=21% Similarity=0.275 Sum_probs=73.6
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC--CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~--~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS----GREIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT----TBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 357899999999999999999999999999999998743 3469999999999999999999999999 5579999
Q ss_pred ecCCCCCC
Q 020954 307 FAKSRMGM 314 (319)
Q Consensus 307 ~ak~~~~~ 314 (319)
|++.+...
T Consensus 82 ~a~~~~~~ 89 (92)
T 2dgv_A 82 IDRNASGP 89 (92)
T ss_dssp ECSCCSSC
T ss_pred EcCCCCCC
Confidence 99987554
No 99
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.4e-19 Score=132.12 Aligned_cols=85 Identities=18% Similarity=0.292 Sum_probs=74.9
Q ss_pred CCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCce--------EEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcc
Q 020954 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFL--------KLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTIL 294 (319)
Q Consensus 227 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~--------~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i 294 (319)
.....++|||+|||.++|+++|+++|++||.|. .|+|..+. .++||||+|.+.++|.+||+.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 344688999999999999999999999999999 68888652 356999999999999999999999999
Q ss_pred cCCCCCCeEEEEecCCCCCCC
Q 020954 295 YSSPTSDGIRLEFAKSRMGMP 315 (319)
Q Consensus 295 ~~~~~G~~i~V~~ak~~~~~~ 315 (319)
. |+.|+|+|++.+....
T Consensus 91 ~----g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 Q----GSKLKVSLARKKPPMN 107 (113)
T ss_dssp T----TEECEEECSSCCCCST
T ss_pred C----CCEEEEEECCCCCCCC
Confidence 9 5679999999876543
No 100
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=4e-19 Score=129.56 Aligned_cols=78 Identities=21% Similarity=0.390 Sum_probs=70.1
Q ss_pred CCcCEEEEcCCCC-CCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 229 TPCATLFVANLGP-TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 229 ~~~~~l~V~nLp~-~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
+++++|||+|||. ++|+++|+++|++||.|.+|++. ++||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNF----GKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCB----TTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeC----CcEEEEEE
Confidence 4588999999998 99999999999999999999985 579999999999999999999999999 55699999
Q ss_pred cCCCCCC
Q 020954 308 AKSRMGM 314 (319)
Q Consensus 308 ak~~~~~ 314 (319)
++.+...
T Consensus 80 a~~~~~~ 86 (96)
T 2kvi_A 80 SSSNARP 86 (96)
T ss_dssp EECCCC-
T ss_pred cCcCCCC
Confidence 9876443
No 101
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=127.26 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=71.9
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcC--CCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKC--PGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~f--G~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..++++|||+|||.++|+++|+++|++| |.|.+|++. ++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLD----GSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEET----TEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeC----CcEEEE
Confidence 3457899999999999999999999999 999999876 359999999999999999999999999 567999
Q ss_pred EecCCCCCCC
Q 020954 306 EFAKSRMGMP 315 (319)
Q Consensus 306 ~~ak~~~~~~ 315 (319)
+|++.+...+
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2cpd_A 84 TLAKPVDKDS 93 (99)
T ss_dssp ECCCCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999876443
No 102
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=2e-18 Score=130.73 Aligned_cols=75 Identities=28% Similarity=0.358 Sum_probs=69.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.+.++|||+|||.++++++|+++|++||.|.+|+|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|+|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 34599999999999999999999999999999999876 68899999999999999999999998 9999999987
Q ss_pred c
Q 020954 140 K 140 (319)
Q Consensus 140 ~ 140 (319)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 5
No 103
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=4.9e-19 Score=135.81 Aligned_cols=85 Identities=16% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
..++++|||+|||.++|+++|+++|++||.|.+|.|+.+. .++||||+|.+.++|.+||+.|||..|. |+.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 94 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQPI 94 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CeEE
Confidence 3457899999999999999999999999999999998643 3679999999999999999999999999 5579
Q ss_pred EEEecCCCCCCCC
Q 020954 304 RLEFAKSRMGMPR 316 (319)
Q Consensus 304 ~V~~ak~~~~~~~ 316 (319)
+|+|++.+..++.
T Consensus 95 ~v~~a~~~~~~~~ 107 (126)
T 3ex7_B 95 SVDWCFVRGPPKG 107 (126)
T ss_dssp EEEESEESSSCCC
T ss_pred EEEEecCCCCCCC
Confidence 9999987765543
No 104
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-18 Score=127.59 Aligned_cols=79 Identities=27% Similarity=0.447 Sum_probs=73.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
....++|||+|||.++++++|+++|+.||.|.+|+|..+.+.++|||||+|.+.++|++|+..|+ .|+.|+|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 44569999999999999999999999999999999999876789999999999999999999999 99999999998
Q ss_pred cCC
Q 020954 141 SNS 143 (319)
Q Consensus 141 ~~~ 143 (319)
...
T Consensus 92 ~~~ 94 (103)
T 2cqi_A 92 TPS 94 (103)
T ss_dssp CTT
T ss_pred CCc
Confidence 644
No 105
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.79 E-value=6.6e-19 Score=128.55 Aligned_cols=76 Identities=20% Similarity=0.374 Sum_probs=70.2
Q ss_pred CCCcCEEEEcCCCC-CCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 228 VTPCATLFVANLGP-TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 228 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
.+++++|||+|||. ++++++|+++|++||.|.+|++. ++||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNF----GKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEET----TEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEE
Confidence 44688999999998 99999999999999999999984 579999999999999999999999999 5579999
Q ss_pred ecCCC
Q 020954 307 FAKSR 311 (319)
Q Consensus 307 ~ak~~ 311 (319)
|++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99865
No 106
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=127.22 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=70.5
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceE--------EEEeecCC----CCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLK--------LKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~--------v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
.++.++|||+|||.++|+++|+++|++||.|.+ |++..+.. +|||||+|.+.++|.+|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345789999999999999999999999999999 99987533 459999999999999999999999999
Q ss_pred CCCCCCeEEEEecC
Q 020954 296 SSPTSDGIRLEFAK 309 (319)
Q Consensus 296 ~~~~G~~i~V~~ak 309 (319)
|+.|+|+||+
T Consensus 90 ----g~~l~V~~A~ 99 (99)
T 2la6_A 90 ----GNPIKVSFAT 99 (99)
T ss_dssp ----SSBCEEEECC
T ss_pred ----CcEEEEEecC
Confidence 5579999985
No 107
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=131.30 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=73.6
Q ss_pred CCCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCe
Q 020954 227 NVTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDG 302 (319)
Q Consensus 227 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~ 302 (319)
...+.++|||+|||.++|+++|+++|++||.|++|+|..+. .++||||+|.+.++|++||+.||+ .|. |+.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~----g~~ 87 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID----GRK 87 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC----CEE
Confidence 34468899999999999999999999999999999998743 466999999999999999999999 888 567
Q ss_pred EEEEecCCCCCCC
Q 020954 303 IRLEFAKSRMGMP 315 (319)
Q Consensus 303 i~V~~ak~~~~~~ 315 (319)
|+|+|++.....+
T Consensus 88 l~V~~a~~~~~~~ 100 (116)
T 2cqd_A 88 ANVNLAYLGAKPR 100 (116)
T ss_dssp CEEEESTTTCCCC
T ss_pred EEEEEcccCCCcc
Confidence 9999998765443
No 108
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6e-19 Score=131.69 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
...++|||+||+.++++++|+++|++||.|.+|+|..+.+.++|||||+|.+.++|++|++.|+ .|+.|+|++++.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3459999999999999999999999999999999999877799999999999999999999988 999999999976
Q ss_pred C
Q 020954 142 N 142 (319)
Q Consensus 142 ~ 142 (319)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 109
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=5.4e-19 Score=142.03 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=72.4
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.++++|||+|||.++|+++|+++|++||.|..|+|..+. .++||||+|.+.++|.+||+.|||..|. |+.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 145 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTIQ 145 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC----CEEEE
Confidence 357899999999999999999999999999999998753 2469999999999999999999999999 66899
Q ss_pred EEecCCCCCCCC
Q 020954 305 LEFAKSRMGMPR 316 (319)
Q Consensus 305 V~~ak~~~~~~~ 316 (319)
|.|++.+..+++
T Consensus 146 V~~a~~~~~~~~ 157 (165)
T 1rk8_A 146 VDWCFVKGPKRV 157 (165)
T ss_dssp EEESEECC----
T ss_pred EEEecCCCCCCC
Confidence 999988765543
No 110
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6e-19 Score=132.06 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=71.9
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
..++|||+|||.++|+++|+++|++||.|.+|++.. .++||||+|.+.++|.+|++.|||..|. |+.|+|+|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFH----HVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSS----SSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEEC----CeEEEEEECC
Confidence 367999999999999999999999999999999885 5679999999999999999999999999 5579999998
Q ss_pred CCCCC
Q 020954 310 SRMGM 314 (319)
Q Consensus 310 ~~~~~ 314 (319)
...-.
T Consensus 83 ~~~~~ 87 (111)
T 1whx_A 83 IGVFG 87 (111)
T ss_dssp TTTTC
T ss_pred CCccC
Confidence 76543
No 111
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=1.2e-19 Score=132.53 Aligned_cols=82 Identities=28% Similarity=0.481 Sum_probs=73.6
Q ss_pred CCcCEEEEcCCCCCCCHHHHH----HHhhcCCCceEEEEee-cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 229 TPCATLFVANLGPTCTEQELT----QVFSKCPGFLKLKIQS-TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~----~~F~~fG~i~~v~i~~-~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
+++++|||+|||.++++++|+ ++|++||.|.+|++.. ...++||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 81 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY----DKPM 81 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC----CcEE
Confidence 458899999999999999999 9999999999999874 234679999999999999999999999998 6689
Q ss_pred EEEecCCCCCC
Q 020954 304 RLEFAKSRMGM 314 (319)
Q Consensus 304 ~V~~ak~~~~~ 314 (319)
+|+|++.+...
T Consensus 82 ~v~~a~~~~~~ 92 (97)
T 1nu4_A 82 RIQYAKTDSDI 92 (97)
T ss_dssp EEEECSSCCTH
T ss_pred EEEEccCCCcc
Confidence 99999987544
No 112
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4.4e-19 Score=132.88 Aligned_cols=79 Identities=14% Similarity=0.270 Sum_probs=72.1
Q ss_pred CcCEEEEcCCCCCCCHHHHH---HHhhcCCCceEEEEeecC-------CCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 230 PCATLFVANLGPTCTEQELT---QVFSKCPGFLKLKIQSTY-------GPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~---~~F~~fG~i~~v~i~~~~-------~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
..++|||+|||.++++++|+ ++|++||.|.+|++..+. .++||||+|.+.++|++||+.|||..|.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~---- 89 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD---- 89 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET----
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC----
Confidence 46789999999999999999 999999999999998753 2369999999999999999999999999
Q ss_pred CCeEEEEecCCCC
Q 020954 300 SDGIRLEFAKSRM 312 (319)
Q Consensus 300 G~~i~V~~ak~~~ 312 (319)
|+.|+|+|++.+.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 6689999999875
No 113
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-18 Score=125.90 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
..+.++|||+|||.++++++|+++|+.||.|.+|.|..+ +++++|||||+|.+.++|++|+..|| .|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345699999999999999999999999999999999887 78899999999999999999999999 999999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
++.+.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98654
No 114
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.4e-19 Score=129.36 Aligned_cols=84 Identities=26% Similarity=0.280 Sum_probs=70.4
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
..+.++|||+|||.++|+++|+++|++||.|.-++......++||||+|.+.++|++||+.|||..|. |+.|+|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE----GRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC----CeEEEEEE
Confidence 34588999999999999999999999999873322222345679999999999999999999999999 56799999
Q ss_pred cCCCCCCC
Q 020954 308 AKSRMGMP 315 (319)
Q Consensus 308 ak~~~~~~ 315 (319)
++.+...+
T Consensus 88 a~~~~~~~ 95 (101)
T 2fc9_A 88 QGPRGSPN 95 (101)
T ss_dssp CSSCCCCC
T ss_pred cCCCCCCC
Confidence 99875443
No 115
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-18 Score=133.13 Aligned_cols=79 Identities=29% Similarity=0.403 Sum_probs=73.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
....++|||+||+.++++++|+++|+.||.|.+|+|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 455699999999999999999999999999999999877 67889999999999999999999999 999999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
++...
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98643
No 116
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=8e-19 Score=131.28 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=74.1
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
..++++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 3457899999999999999999999999999999998643 3579999999999999999999999999 5679
Q ss_pred EEEecCCCCCC
Q 020954 304 RLEFAKSRMGM 314 (319)
Q Consensus 304 ~V~~ak~~~~~ 314 (319)
+|+|++.+..+
T Consensus 99 ~V~~a~~~~~~ 109 (110)
T 1oo0_B 99 QVDWCFVKGPK 109 (110)
T ss_dssp EEEESEESSCC
T ss_pred EEEEcccCCCC
Confidence 99999976543
No 117
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=126.09 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=66.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~a~ 140 (319)
++++|||+|||.++|+++|+++|++||.|.+|++.. ++|||||+|.+.++|.+|++.++ .|+.|+|+|++
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 349999999999999999999999999999999874 57999999999999999999987 59999999998
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
++
T Consensus 96 ~k 97 (100)
T 3r27_A 96 SQ 97 (100)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 118
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.4e-19 Score=128.54 Aligned_cols=81 Identities=22% Similarity=0.324 Sum_probs=70.9
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCC-ceEEEEeecCCCCEEEEEecChHHHHHHHHHhCC-CcccCCCCCCeEEEEe
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPG-FLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQG-TILYSSPTSDGIRLEF 307 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~-i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG-~~i~~~~~G~~i~V~~ 307 (319)
..++|||+|||.++|+++|+++|++||. |..+.+. +++||||+|.+.++|.+|++.||| ..|. |+.|+|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~----g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELH----GKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEET----TEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeEC----CEEEEEEE
Confidence 4779999999999999999999999999 6666654 467999999999999999999999 9999 56899999
Q ss_pred cCCCCCCCCC
Q 020954 308 AKSRMGMPRK 317 (319)
Q Consensus 308 ak~~~~~~~~ 317 (319)
++.+..+...
T Consensus 80 a~~~~~~~~~ 89 (93)
T 2cqh_A 80 SVSKKLRSSG 89 (93)
T ss_dssp CCCCCCCCCS
T ss_pred ccCccccCCC
Confidence 9987665443
No 119
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-18 Score=125.49 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=72.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..+.++|||+|||.++++++|+++|+.||.|..|+|..+.+.++|||||+|.+.++|++|+..|+ .|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 44559999999999999999999999999999999999866699999999999999999999988 99999999998
Q ss_pred cCC
Q 020954 141 SNS 143 (319)
Q Consensus 141 ~~~ 143 (319)
.+.
T Consensus 92 ~~~ 94 (103)
T 2cq3_A 92 ARV 94 (103)
T ss_dssp SSC
T ss_pred cCC
Confidence 644
No 120
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=126.70 Aligned_cols=79 Identities=27% Similarity=0.309 Sum_probs=71.7
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC---CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG---PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~---~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
..+.++|||+|||.++++++|+++|++||.|.+|++..+.. ++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 88 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY----GRPIN 88 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC----CCEEE
Confidence 34578999999999999999999999999999999987543 459999999999999999999999999 56799
Q ss_pred EEecCC
Q 020954 305 LEFAKS 310 (319)
Q Consensus 305 V~~ak~ 310 (319)
|+|+++
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999975
No 121
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=1.2e-18 Score=132.48 Aligned_cols=80 Identities=28% Similarity=0.345 Sum_probs=70.6
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCE-EEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPV-AFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~-aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
-..|||+||++.+|+++|+++|++||.|.+|++..+ .++| |||+|.+.++|.+|++.|||+.|.+. ++.|+|+|++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~--~~~LrI~~ak 104 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDFSK 104 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHTTCEEETT--EEEEEEEECS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHcCCCeecCC--CcEEEEEecC
Confidence 346779999999999999999999999999998874 4566 99999999999999999999999963 2579999999
Q ss_pred CCCC
Q 020954 310 SRMG 313 (319)
Q Consensus 310 ~~~~ 313 (319)
.+..
T Consensus 105 ~~~l 108 (130)
T 3zzy_A 105 LTSL 108 (130)
T ss_dssp CSSC
T ss_pred CCce
Confidence 7643
No 122
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=5.1e-18 Score=128.50 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=69.9
Q ss_pred CcCE--EEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCE-EEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 230 PCAT--LFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPV-AFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 230 ~~~~--l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~-aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
++++ |||+||++.+|+++|+++|++||.|.+|+|... .|| |||+|.+.++|.+|++.|||..|.++ ++.|+|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~--~~~l~V~ 97 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAG--CCTLKIE 97 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTT--BSEEEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCC--CeEEEEE
Confidence 3444 579999999999999999999999999999763 486 99999999999999999999999864 3579999
Q ss_pred ecCCCC
Q 020954 307 FAKSRM 312 (319)
Q Consensus 307 ~ak~~~ 312 (319)
||+.+.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 999874
No 123
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=124.29 Aligned_cols=74 Identities=24% Similarity=0.420 Sum_probs=69.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|++||.|..|.|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|+||+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 3499999999999999999999999999999999887 68899999999999999999999999 99999999985
No 124
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.3e-18 Score=129.80 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=70.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEE
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDL 138 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~ 138 (319)
...+.++|||+|||.++++++|+++|+.||.|.+|+|..+ ++.++|||||+|.+.++|++|+..++ .|+.|+|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 3445699999999999999999999999999999999887 68999999999999999999999887 999999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
+....
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97643
No 125
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.4e-19 Score=129.11 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=66.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~a~ 140 (319)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.++ .|+.|+|+|++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 4499999999999999999999999999999999863 7999999999999999999775 79999999987
Q ss_pred cCC
Q 020954 141 SNS 143 (319)
Q Consensus 141 ~~~ 143 (319)
.+.
T Consensus 91 ~~~ 93 (105)
T 1sjq_A 91 HKE 93 (105)
T ss_dssp SSS
T ss_pred CCC
Confidence 643
No 126
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=8.7e-19 Score=130.40 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=70.9
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.+.++|||+|||.++|+++|+++|++||.|++|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 102 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD----GRPMNI 102 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEE
Confidence 457899999999999999999999999999999998753 3459999999999999999999999999 567999
Q ss_pred EecCC
Q 020954 306 EFAKS 310 (319)
Q Consensus 306 ~~ak~ 310 (319)
+|+++
T Consensus 103 ~~a~s 107 (107)
T 3ulh_A 103 QLVTS 107 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99874
No 127
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=127.17 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=72.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
...++|||+|||.++++++|+++|++||.|..|.|..+ ++.++|||||+|.+.++|++|+..|+ .|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34599999999999999999999999999999999887 78899999999999999999999999 9999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 7643
No 128
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-18 Score=125.25 Aligned_cols=77 Identities=17% Similarity=0.338 Sum_probs=71.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
.+.++|||+|||.++++++|+++|+.||.|.+|+|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|.|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34599999999999999999999999999999999887 68889999999999999999999998 99999999997
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
..
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 129
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=128.23 Aligned_cols=84 Identities=29% Similarity=0.397 Sum_probs=74.4
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhc-CCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCc-ccCCCCCCeE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSK-CPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTI-LYSSPTSDGI 303 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~-fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~-i~~~~~G~~i 303 (319)
.++++|||+|||.++|+++|+++|++ ||.|.+|+|+.+. .++||||+|.+.++|.+|++.|||.. |. |+.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~----g~~l 82 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG----SKPV 82 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS----SSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC----CEeE
Confidence 35789999999999999999999999 9999999998753 34599999999999999999999999 99 5579
Q ss_pred EEEecCCCCCCCC
Q 020954 304 RLEFAKSRMGMPR 316 (319)
Q Consensus 304 ~V~~ak~~~~~~~ 316 (319)
+|+|++.+..+++
T Consensus 83 ~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 83 RLSVAIPKASRVK 95 (104)
T ss_dssp CCCBCCCCCSCCC
T ss_pred EEEEccCCCcCCC
Confidence 9999988765543
No 130
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.6e-18 Score=125.18 Aligned_cols=78 Identities=22% Similarity=0.386 Sum_probs=71.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
..+.++|||+|||.++++++|+++|+.||.|.+|.|..+ +++++|||||+|.+.++|++|++ ++ .|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 345599999999999999999999999999999999887 68899999999999999999998 77 999999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
++.+.
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 98643
No 131
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=127.00 Aligned_cols=79 Identities=28% Similarity=0.405 Sum_probs=73.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC---CCCCccEEEEEEcCHHHHHHHHHHc-C----CCcEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS---TQNSQPFAFAVFSDQQSALGAMYAL-N----KGSTLYI 136 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~---~~~~~g~afV~f~~~~~A~~A~~~l-~----~g~~l~v 136 (319)
....++|||+|||.++++++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|++|+..| | .|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 445699999999999999999999999999999999877 7889999999999999999999999 6 9999999
Q ss_pred EEcccCC
Q 020954 137 DLAKSNS 143 (319)
Q Consensus 137 ~~a~~~~ 143 (319)
+|++.+.
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998643
No 132
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=125.03 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=71.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|++||.|.+|+|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4499999999999999999999999999999999887 68899999999999999999999998 99999999997
Q ss_pred cCC
Q 020954 141 SNS 143 (319)
Q Consensus 141 ~~~ 143 (319)
.+.
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 133
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=124.55 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=69.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|+.||.|.++.+..+ ++.++|||||+|.+.++|++|++.|| .|+.|+|+|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4589999999999999999999999999999999886 78899999999999999999999998 99999999987
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
.+
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 53
No 134
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.3e-18 Score=131.22 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=72.8
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec-CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST-YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~-~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
++++|||+|||.++|+++|+++|+.||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..+. |+.|+|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS----NRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS----SCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEe
Confidence 4789999999999999999999999999999999864 34679999999999999999999999999 557999999
Q ss_pred CCCCCC
Q 020954 309 KSRMGM 314 (319)
Q Consensus 309 k~~~~~ 314 (319)
+.+...
T Consensus 83 ~~~~~~ 88 (115)
T 3lqv_A 83 NANRAF 88 (115)
T ss_dssp CHHHHT
T ss_pred cCChhh
Confidence 875433
No 135
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=3.7e-18 Score=126.53 Aligned_cols=78 Identities=26% Similarity=0.373 Sum_probs=71.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CC---cEEEEE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KG---STLYID 137 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g---~~l~v~ 137 (319)
.+.++|||+|||.++++++|+++|+.||.|.+|.|..+ ++.++|||||+|.+.++|++|++.|| .| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 34599999999999999999999999999999999887 78889999999999999999999998 55 999999
Q ss_pred EcccCC
Q 020954 138 LAKSNS 143 (319)
Q Consensus 138 ~a~~~~ 143 (319)
|++...
T Consensus 93 ~a~~~~ 98 (105)
T 2dnh_A 93 FADTDK 98 (105)
T ss_dssp ESCSSC
T ss_pred ECccCc
Confidence 998644
No 136
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-19 Score=131.66 Aligned_cols=77 Identities=12% Similarity=0.195 Sum_probs=69.8
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
...++|||+|||.++|+++|+++|++||.|.+|+|..+. .+|||||+|.+.++|.+||+ +||..|. |+.|+|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~----gr~l~V 83 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK----ETDLLI 83 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT----TTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC----CEEEEE
Confidence 346799999999999999999999999999999998743 56799999999999999999 9999999 556999
Q ss_pred EecCC
Q 020954 306 EFAKS 310 (319)
Q Consensus 306 ~~ak~ 310 (319)
.|++.
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 98776
No 137
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=128.14 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=67.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccCC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSNS 143 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~~ 143 (319)
++|||+|||.++++++|+++|++||.|.+|.+..+ ++|||||+|.+.++|++|++.|+ .|+.|+|++++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999999999999999999999999999876 78999999999999999999888 99999999998643
No 138
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.1e-18 Score=124.09 Aligned_cols=75 Identities=29% Similarity=0.451 Sum_probs=69.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.+.++|||+|||.++++++|+++|++||.|..+.+..+ +++++|||||+|.+.++|++|++.|| .|+.|+|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34599999999999999999999999999999998775 77889999999999999999999999 9999999998
Q ss_pred c
Q 020954 140 K 140 (319)
Q Consensus 140 ~ 140 (319)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 139
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-18 Score=124.52 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=71.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
..+.++|||+|||.++++++|+++|+.||.|..|.|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 445699999999999999999999999999999999887 67889999999999999999999999 999999999
Q ss_pred ccc
Q 020954 139 AKS 141 (319)
Q Consensus 139 a~~ 141 (319)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 140
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.4e-18 Score=127.17 Aligned_cols=81 Identities=20% Similarity=0.344 Sum_probs=72.5
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC---CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG---PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~---~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.++++|||+|||.++|+++|+++|++||.|++|+|..+.. ++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 88 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF----DRPMHV 88 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC----CCEEEE
Confidence 4578999999999999999999999999999999987543 459999999999999999999999999 567999
Q ss_pred EecCCCCC
Q 020954 306 EFAKSRMG 313 (319)
Q Consensus 306 ~~ak~~~~ 313 (319)
+|++....
T Consensus 89 ~~a~~~~~ 96 (114)
T 2do0_A 89 KMDERALP 96 (114)
T ss_dssp EECSCCCC
T ss_pred EEcccCCC
Confidence 99986543
No 141
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.3e-19 Score=130.65 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=72.3
Q ss_pred CCcCEEEE--cCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcc-cCCCCCCeEEE
Q 020954 229 TPCATLFV--ANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTIL-YSSPTSDGIRL 305 (319)
Q Consensus 229 ~~~~~l~V--~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i-~~~~~G~~i~V 305 (319)
.++++||| +||+.++|+++|+++|++||.|.+|.+.. +++||||+|.+.++|.+|++.|||+.| ..-..|++|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 35789999 66999999999999999999999999875 467999999999999999999999988 21111678999
Q ss_pred EecCCCCCCC
Q 020954 306 EFAKSRMGMP 315 (319)
Q Consensus 306 ~~ak~~~~~~ 315 (319)
.|+++....+
T Consensus 101 ~~a~~~p~~~ 110 (114)
T 2cq2_A 101 NFVEKVQWSG 110 (114)
T ss_dssp EEESCCCCSS
T ss_pred EecccCcccC
Confidence 9998765443
No 142
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=126.62 Aligned_cols=80 Identities=28% Similarity=0.402 Sum_probs=73.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEE
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (319)
...+.++|||+|||.++++++|+++|++||.|..|.|..+ ++.++|||||+|.+.++|++|+..|| .|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3455699999999999999999999999999999999887 78899999999999999999999999 99999999
Q ss_pred EcccCC
Q 020954 138 LAKSNS 143 (319)
Q Consensus 138 ~a~~~~ 143 (319)
|++.+.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998643
No 143
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=4.7e-18 Score=128.14 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=73.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
..+.++|||+|||.++++++|+++|+.||.|..|+|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445699999999999999999999999999999999887 78899999999999999999999998 899999999
Q ss_pred cccCCc
Q 020954 139 AKSNSR 144 (319)
Q Consensus 139 a~~~~~ 144 (319)
++.+..
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 986543
No 144
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=2.2e-18 Score=125.56 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=71.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.++|||+|||.++++++|+++|++||.|.+|+|..+ +++++|||||+|.+.++|++|++.|+ .|+.|+|++++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 489999999999999999999999999999999887 68899999999999999999999998 999999999986
Q ss_pred CC
Q 020954 142 NS 143 (319)
Q Consensus 142 ~~ 143 (319)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 145
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=4.6e-18 Score=125.54 Aligned_cols=81 Identities=20% Similarity=0.349 Sum_probs=72.2
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+.++|||+|||.++|+++|+++|++|| |.+|+++.+.. ++||||+|.+.++|.+|| .|||..|. |+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~ 86 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG----DRSLR 86 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET----TEECE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC----CeEEE
Confidence 4578999999999999999999999996 99999987543 459999999999999999 89999999 56799
Q ss_pred EEecCCCCCCC
Q 020954 305 LEFAKSRMGMP 315 (319)
Q Consensus 305 V~~ak~~~~~~ 315 (319)
|+|++.+...+
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dng_A 87 VDIAEGRKQDK 97 (103)
T ss_dssp EEECCCCCCCC
T ss_pred EEEecCCCCCC
Confidence 99999876544
No 146
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=127.48 Aligned_cols=78 Identities=24% Similarity=0.374 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
..+.++|||+|||.++++++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|++|++.|| .|+.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345699999999999999999999999999999999887 68899999999999999999999998 999999999
Q ss_pred cccC
Q 020954 139 AKSN 142 (319)
Q Consensus 139 a~~~ 142 (319)
++..
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 9864
No 147
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=125.38 Aligned_cols=83 Identities=20% Similarity=0.356 Sum_probs=71.6
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCce-EEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFL-KLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~-~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
+.++|||+|||.++|+++|+++|++||.|. +|++..+. .++||||+|.+.++|++|++.|||..|.++...+.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 578999999999999999999999999999 99998754 3359999999999999999999999999442111299
Q ss_pred EEecCCCC
Q 020954 305 LEFAKSRM 312 (319)
Q Consensus 305 V~~ak~~~ 312 (319)
|+|++...
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99998753
No 148
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=126.25 Aligned_cols=79 Identities=24% Similarity=0.387 Sum_probs=73.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..+.++|||+|||.++++++|+++|+.||.|..|+|..+++.++|||||+|.+.++|++|++.|| .|+.|+|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 44569999999999999999999999999999999998888899999999999999999999998 99999999998
Q ss_pred cCC
Q 020954 141 SNS 143 (319)
Q Consensus 141 ~~~ 143 (319)
.+.
T Consensus 92 ~~~ 94 (103)
T 2d9p_A 92 RKE 94 (103)
T ss_dssp SCC
T ss_pred ccc
Confidence 644
No 149
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=127.15 Aligned_cols=79 Identities=28% Similarity=0.442 Sum_probs=72.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.+.++|||+|||.++++++|+++|+.||.|..|+|..+ ++.++|||||+|.+.++|++|++.|| .|+.|+|+|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34599999999999999999999999999999999887 78899999999999999999999999 9999999999
Q ss_pred ccCCc
Q 020954 140 KSNSR 144 (319)
Q Consensus 140 ~~~~~ 144 (319)
+....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86543
No 150
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=6.7e-18 Score=127.38 Aligned_cols=79 Identities=25% Similarity=0.384 Sum_probs=73.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.++.++|||+|||.++++++|+++|+.||.|.+|.|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345699999999999999999999999999999999988 78899999999999999999999999 9999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8654
No 151
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.4e-18 Score=123.74 Aligned_cols=79 Identities=23% Similarity=0.285 Sum_probs=71.1
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
.+.++|||+|| ++|+++|+++|++||.|.+|++. ..++||||+|.+.++|.+||+.|||..|. |+.|+|+|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEET----TEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEEC
Confidence 35789999996 89999999999999999999996 56789999999999999999999999998 668999999
Q ss_pred CCCCCCC
Q 020954 309 KSRMGMP 315 (319)
Q Consensus 309 k~~~~~~ 315 (319)
+.+....
T Consensus 85 ~~~~~~~ 91 (97)
T 1x5p_A 85 RKQPMLD 91 (97)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 152
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=125.11 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=71.9
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEE-EeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLK-IQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~-i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
..++|||+|||.++|+++|+++|++||.|.+|+ ++.+...+.|||+|.+.++|.+|++.|||..|. |+.|+|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE----NFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEc
Confidence 467899999999999999999999999999995 777666667999999999999999999999999 557999999
Q ss_pred CCCC
Q 020954 309 KSRM 312 (319)
Q Consensus 309 k~~~ 312 (319)
+.+.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9873
No 153
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=5.8e-19 Score=127.08 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=65.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCC--CceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKCP--GFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~fG--~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.+|||+|||.++|+++|+++|++|| .|.+|+++.+. ++|||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~----gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS----SCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC----CEEEEE
Confidence 3799999999999999999999999 99999998753 3459999999999999999999999999 557999
Q ss_pred EecCCCCCC
Q 020954 306 EFAKSRMGM 314 (319)
Q Consensus 306 ~~ak~~~~~ 314 (319)
.+++.+...
T Consensus 78 ~~~~~~~~~ 86 (90)
T 3p5t_L 78 TPSNKLEHH 86 (90)
T ss_dssp CCC------
T ss_pred EECCCCccc
Confidence 999987543
No 154
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=3e-18 Score=129.22 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=71.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|+.||.|.+|+|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|+|++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 4589999999999999999999999999999999887 78899999999999999999999998 99999999998
Q ss_pred cCC
Q 020954 141 SNS 143 (319)
Q Consensus 141 ~~~ 143 (319)
.+.
T Consensus 104 ~~~ 106 (115)
T 2cpz_A 104 SKN 106 (115)
T ss_dssp CSC
T ss_pred CCC
Confidence 644
No 155
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=125.81 Aligned_cols=85 Identities=18% Similarity=0.321 Sum_probs=74.7
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCC----CC
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSP----TS 300 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~----~G 300 (319)
....++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|.++. .|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3457899999999999999999999999999999998754 2459999999999999999999999996544 37
Q ss_pred CeEEEEecCCCC
Q 020954 301 DGIRLEFAKSRM 312 (319)
Q Consensus 301 ~~i~V~~ak~~~ 312 (319)
++|+|.|++++.
T Consensus 102 ~~l~v~~a~p~~ 113 (114)
T 1x5o_A 102 EPLLCKFSGPSS 113 (114)
T ss_dssp SCBEEEECCCSC
T ss_pred CceeEEccCCCC
Confidence 789999999654
No 156
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=9.4e-19 Score=131.97 Aligned_cols=74 Identities=19% Similarity=0.354 Sum_probs=68.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
..++|||+|||.++++++|+++|+.||.|.+|.|..+ +.++|||||+|.+.++|.+|+..|| .|+.|+|.|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT-PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS-TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3499999999999999999999999999999999865 4569999999999999999999999 999999999874
No 157
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=6.1e-19 Score=129.57 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=68.6
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC-----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY-----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~-----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
...++|||+|||.++|+++|+++|++|| |.+|++..+. .+|||||+|.+.++|.+|+ .|||..|. |+.|
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~----g~~l 90 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----NRRI 90 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT----TBCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC----CeEE
Confidence 4578999999999999999999999999 9999998654 3679999999999999999 89999999 5579
Q ss_pred EEEecCCCC
Q 020954 304 RLEFAKSRM 312 (319)
Q Consensus 304 ~V~~ak~~~ 312 (319)
+|+|++.+.
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999998753
No 158
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=1.9e-18 Score=124.89 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=72.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.+.++|||+|||.++++++|+++|++||.|..++|..++++++|||||+|.+.++|++|++.|+ .|+.|+|++++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3459999999999999999999999999999999998889999999999999999999999998 999999999976
Q ss_pred CC
Q 020954 142 NS 143 (319)
Q Consensus 142 ~~ 143 (319)
..
T Consensus 86 ~~ 87 (92)
T 2dgv_A 86 AS 87 (92)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 159
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=125.19 Aligned_cols=72 Identities=25% Similarity=0.356 Sum_probs=68.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccE--------EEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEE
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYES--------SHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTL 134 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l 134 (319)
++|||+|||.++++++|+++|++||.|.+ ++|..+ +++++|||||+|.+.++|++|++.|| .|+.|
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 93 (99)
T 2la6_A 14 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPI 93 (99)
T ss_dssp SEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 99999999999999999999999999999 988876 78899999999999999999999998 99999
Q ss_pred EEEEcc
Q 020954 135 YIDLAK 140 (319)
Q Consensus 135 ~v~~a~ 140 (319)
+|++|+
T Consensus 94 ~V~~A~ 99 (99)
T 2la6_A 94 KVSFAT 99 (99)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999874
No 160
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=137.67 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCC--CccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFP--GYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (319)
...++|||+||++++++++|+++|+.|| .|.+|+|..+ +|+++|||||+|.+.++|++||..|| .|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3458999999999999999999999999 8999999887 89999999999999999999999999 99999999
Q ss_pred EcccC
Q 020954 138 LAKSN 142 (319)
Q Consensus 138 ~a~~~ 142 (319)
++...
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99653
No 161
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=6.1e-18 Score=129.28 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=74.6
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..+++|||+|||.++++++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V 108 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPMDI 108 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS----SCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC----CcEEEE
Confidence 357899999999999999999999999999999998753 5679999999999999999999999999 567999
Q ss_pred EecCCCCCCC
Q 020954 306 EFAKSRMGMP 315 (319)
Q Consensus 306 ~~ak~~~~~~ 315 (319)
+||.......
T Consensus 109 ~~a~~~~~~~ 118 (124)
T 2kt5_A 109 QLVASQIDLE 118 (124)
T ss_dssp EEECCTTCCC
T ss_pred EEeCCCCCCC
Confidence 9999875543
No 162
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=125.02 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=71.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEE-EEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESS-HLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
+.++|||+|||.++++++|+++|+.||.|..+ +|..+ ++.++|||||+|.+.++|++|+..|| .|+.|+|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45999999999999999999999999999999 88886 78899999999999999999999898 9999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7644
No 163
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=2.9e-18 Score=121.35 Aligned_cols=74 Identities=32% Similarity=0.515 Sum_probs=70.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
.+|||+|||.++++++|+++|+.||.|.++.+..+ +++++|||||+|.+.++|++|++.|| .|+.|+|+|++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999877 78899999999999999999999998 9999999999764
No 164
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.4e-18 Score=127.59 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=73.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (319)
....++|||+|||.++++++|+++|+.||.|..|+|..+ +++++|||||+|.+.++|++|++.++ .|+.|+|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 445699999999999999999999999999999999887 68899999999999999999999998 9999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 94 ~~~~ 97 (116)
T 2cqd_A 94 YLGA 97 (116)
T ss_dssp TTTC
T ss_pred ccCC
Confidence 7643
No 165
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=8.2e-19 Score=128.84 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=71.0
Q ss_pred CcCEEEEcCCCC------CCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 230 PCATLFVANLGP------TCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 230 ~~~~l~V~nLp~------~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
.+++|||+|||. ++++++|+++|++||.|.+|+|+.+. ++|||||+|.+.++|.+|++.|||..|.+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~-- 82 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK-- 82 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS--
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC--
Confidence 367999999999 99999999999999999999998654 467999999999999999999999999941
Q ss_pred CCeEEEEecCCC
Q 020954 300 SDGIRLEFAKSR 311 (319)
Q Consensus 300 G~~i~V~~ak~~ 311 (319)
+.|+|.|++.+
T Consensus 83 -r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 -HRLFLYTMKDV 93 (100)
T ss_dssp -CBCEEEESHHH
T ss_pred -eEEEEEECchh
Confidence 57999999764
No 166
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=126.12 Aligned_cols=78 Identities=28% Similarity=0.425 Sum_probs=72.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.+.++|||+|||.++++++|+++|+.||.|..|+|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|+|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 34599999999999999999999999999999999886 78899999999999999999999999 9999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8643
No 167
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.4e-18 Score=128.41 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=70.5
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
....++|||+|||.++|+++|+++|++||.|.+|++..+. .+|||||+|.+.++|.+||+.+ |..|. |+.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~----g~~l 96 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD----SKTI 96 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET----TEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC----CEEE
Confidence 3457899999999999999999999999999999998743 4679999999999999999976 58888 5679
Q ss_pred EEEecCCCCCCC
Q 020954 304 RLEFAKSRMGMP 315 (319)
Q Consensus 304 ~V~~ak~~~~~~ 315 (319)
+|.|++.+..++
T Consensus 97 ~V~~a~~~~~~~ 108 (109)
T 2rs2_A 97 DPKVAFPRRAQP 108 (109)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 999999775543
No 168
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=3.1e-18 Score=122.37 Aligned_cols=75 Identities=21% Similarity=0.367 Sum_probs=68.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (319)
..+.++|||+|||.++++++|+++|++||.|.+++|..+ +++++|||||+|.+.++|++|++.++ .|+.|+|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 455699999999999999999999999999999999887 68899999999999999999997655 8999999875
No 169
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=8.5e-19 Score=127.79 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=71.8
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
.+.++|||+|||.++|+++|+++|++||.|..+ ......++||||+|.+.++|.+|++.|||..|. |+.|+|+|+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET----TEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEEc
Confidence 457899999999999999999999999998887 333445679999999999999999999999999 667999999
Q ss_pred CCCCCCC
Q 020954 309 KSRMGMP 315 (319)
Q Consensus 309 k~~~~~~ 315 (319)
+.+...+
T Consensus 89 ~~~~~~~ 95 (96)
T 1fjc_A 89 GEKGGTR 95 (96)
T ss_dssp SSSCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 170
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-19 Score=126.23 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=69.0
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
++++|||+|||.++++++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++.|||..|.+ +.|++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~~~~ 79 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA----QMAKQ 79 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE----ESCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee----EEEee
Confidence 47899999999999999999999999999999998743 36799999999999999999999999994 46888
Q ss_pred EecCC
Q 020954 306 EFAKS 310 (319)
Q Consensus 306 ~~ak~ 310 (319)
+|+++
T Consensus 80 ~~~~s 84 (85)
T 1x4e_A 80 SGPSS 84 (85)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87653
No 171
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=125.77 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=70.3
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
...++|||+|||.++|+++|+++|++||.|..+.++.+. .++||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 88 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVK 88 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC----CeEEE
Confidence 346799999999999999999999999999877666532 3469999999999999999999999999 56799
Q ss_pred EEecCCCC
Q 020954 305 LEFAKSRM 312 (319)
Q Consensus 305 V~~ak~~~ 312 (319)
|+|++.+.
T Consensus 89 V~~a~~~~ 96 (98)
T 2cqp_A 89 LVLGSGPS 96 (98)
T ss_dssp EEESSCSS
T ss_pred EEEcCCCC
Confidence 99998764
No 172
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=128.25 Aligned_cols=80 Identities=23% Similarity=0.392 Sum_probs=72.3
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
+.++|||+|||.++++++|+++|++||.|.+|++..+.. ++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS----GRALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS----SSCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 478999999999999999999999999999999987532 469999999999999999999999998 557999
Q ss_pred EecCCCCC
Q 020954 306 EFAKSRMG 313 (319)
Q Consensus 306 ~~ak~~~~ 313 (319)
+|++.+..
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 99997643
No 173
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=125.03 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=71.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
....++|||+|||.++++++|+++|+.||.|.+|+|..+ .++++|||||+|.+.++|++|++.|| .|+.|+|+|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 345699999999999999999999999999999999887 67889999999999999999999998 9999999998
Q ss_pred cc
Q 020954 140 KS 141 (319)
Q Consensus 140 ~~ 141 (319)
++
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 174
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=133.32 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=70.9
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceE--EEEeecC----CCCEEEEEecChHHHHHHHHHhCCC----cccCC
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLK--LKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGT----ILYSS 297 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~--v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~----~i~~~ 297 (319)
...+++|||+|||.++|+++|+++|++||.|.. |+|+.+. ++|||||+|.+. +|.+|++.|||. .|.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~-- 96 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID-- 96 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC--
Confidence 345789999999999999999999999999976 8988754 467999999999 999999999999 999
Q ss_pred CCCCeEEEEecCCC
Q 020954 298 PTSDGIRLEFAKSR 311 (319)
Q Consensus 298 ~~G~~i~V~~ak~~ 311 (319)
|+.|+|+|++.+
T Consensus 97 --gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 --GKTINVEFAKGS 108 (131)
T ss_dssp --GCCCCCEECCCS
T ss_pred --CEEEEEEECCCC
Confidence 557999999875
No 175
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=127.01 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=70.4
Q ss_pred CcCEEEEcCCCCCC------CHHHHHHHhhcCCCceEEEEeec--CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCC
Q 020954 230 PCATLFVANLGPTC------TEQELTQVFSKCPGFLKLKIQST--YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSD 301 (319)
Q Consensus 230 ~~~~l~V~nLp~~~------t~~~L~~~F~~fG~i~~v~i~~~--~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~ 301 (319)
.+++|||+|||..+ |+++|+++|++||.|.+|++... .++|||||+|.+.++|.+|++.|||..|. |+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS----TT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC----CC
Confidence 46799999999999 78999999999999999999842 34679999999999999999999999999 65
Q ss_pred -eEEEEecCCC
Q 020954 302 -GIRLEFAKSR 311 (319)
Q Consensus 302 -~i~V~~ak~~ 311 (319)
.|+|+|++..
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 7999999854
No 176
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=124.15 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=66.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++.++ .|+.|+|+|++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 4599999999999999999999999999999988753 8999999999999999999764 89999999998
Q ss_pred cCC
Q 020954 141 SNS 143 (319)
Q Consensus 141 ~~~ 143 (319)
.+.
T Consensus 90 ~~~ 92 (101)
T 2cq1_A 90 HKE 92 (101)
T ss_dssp CSS
T ss_pred ccc
Confidence 643
No 177
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=124.97 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=67.1
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEE
Q 020954 66 DEVRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDL 138 (319)
Q Consensus 66 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~ 138 (319)
++.++|||+|||+ ++|+++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|++.|+ .|+.|+|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 3569999999999 999999999999999999999975 35899999999999999999876 899999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
++...
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 98643
No 178
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.5e-18 Score=124.49 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=66.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|++||.|.+|.|.. .+|||||+|.+.++|.+|++.|+ .|+.|+|+|++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 349999999999999999999999999999999875 37999999999999999999775 79999999998
Q ss_pred cCC
Q 020954 141 SNS 143 (319)
Q Consensus 141 ~~~ 143 (319)
.+.
T Consensus 90 ~~~ 92 (104)
T 1wex_A 90 SKR 92 (104)
T ss_dssp SSS
T ss_pred Ccc
Confidence 644
No 179
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=124.75 Aligned_cols=79 Identities=25% Similarity=0.356 Sum_probs=72.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHc-------C---CCc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYAL-------N---KGS 132 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l-------~---~g~ 132 (319)
..+.++|||+|||.++++++|+++|+.||.|..|+|..+ ++.++|||||+|.+.++|++|++.+ . .|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 345699999999999999999999999999999999887 6789999999999999999999987 3 899
Q ss_pred EEEEEEcccCC
Q 020954 133 TLYIDLAKSNS 143 (319)
Q Consensus 133 ~l~v~~a~~~~ 143 (319)
.|+|.|++.+.
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999998654
No 180
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4e-18 Score=126.54 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=72.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
..+.++|||+|||.++++++|+++|+.||.|.+|.|..+ ++.++|||||+|.+.++|++|+..|| .|+.|+|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 344599999999999999999999999999999999877 68899999999999999999999988 999999999
Q ss_pred cccC
Q 020954 139 AKSN 142 (319)
Q Consensus 139 a~~~ 142 (319)
++.+
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9764
No 181
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5e-18 Score=125.80 Aligned_cols=83 Identities=22% Similarity=0.236 Sum_probs=73.9
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
....++|||+|||.++|+++|+++|++||.|.+|++..+.. ++||||+|.+.++|.+||+. ||..|. |+.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~----g~~l 87 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD----GRNI 87 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET----TEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC----CEEE
Confidence 34678999999999999999999999999999999987532 45999999999999999998 999999 5579
Q ss_pred EEEecCCCCCCC
Q 020954 304 RLEFAKSRMGMP 315 (319)
Q Consensus 304 ~V~~ak~~~~~~ 315 (319)
+|+|++.+...+
T Consensus 88 ~V~~a~~~~~~~ 99 (105)
T 2dh8_A 88 DPKPCTPRGMQP 99 (105)
T ss_dssp BCCCSCCSSCCT
T ss_pred EEEEccCCCCCC
Confidence 999999876554
No 182
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=129.85 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=70.8
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..++|||+|||.++|+++|+++|++||.|.+|+|+.+. .++||||+|.+.++|.+|| .|||..|. |+.|+|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL----GVPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET----TEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC----CeEEEE
Confidence 46899999999999999999999999999999998643 4679999999999999999 99999999 567999
Q ss_pred EecCCCC
Q 020954 306 EFAKSRM 312 (319)
Q Consensus 306 ~~ak~~~ 312 (319)
.|++.+.
T Consensus 99 ~~a~~~~ 105 (114)
T 2cq4_A 99 QASQAEK 105 (114)
T ss_dssp EEHHHHH
T ss_pred EecCCCc
Confidence 9998653
No 183
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=6.5e-18 Score=125.40 Aligned_cols=78 Identities=24% Similarity=0.386 Sum_probs=71.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC-------CCcEEEE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN-------KGSTLYI 136 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~-------~g~~l~v 136 (319)
.+.++|||+|||.++++++|+++|++||.|.+|+|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 34599999999999999999999999999999999887 68899999999999999999999888 4699999
Q ss_pred EEcccCC
Q 020954 137 DLAKSNS 143 (319)
Q Consensus 137 ~~a~~~~ 143 (319)
.+++...
T Consensus 91 ~~a~~~~ 97 (106)
T 2dgp_A 91 KPADSES 97 (106)
T ss_dssp EECCCCS
T ss_pred EECCccc
Confidence 9998643
No 184
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=127.67 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=66.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~a~ 140 (319)
+.++|||+|||+++++++|+++|++||.|.+|+|..+ +|||||+|.+.++|++|++.++ .|+.|+|+|++
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 3499999999999999999999999999999999863 7999999999999999999775 89999999997
Q ss_pred cCC
Q 020954 141 SNS 143 (319)
Q Consensus 141 ~~~ 143 (319)
.+.
T Consensus 106 ~k~ 108 (119)
T 2ad9_A 106 HKE 108 (119)
T ss_dssp SSS
T ss_pred CCC
Confidence 643
No 185
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=6.9e-18 Score=134.30 Aligned_cols=83 Identities=23% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+.++|||+|||.++|+++|+++|++||.|++|+|+.+.. ++||||+|.+.++|.+||+.|||..|. |+.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD----DRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 4578999999999999999999999999999999987543 459999999999999999999999998 55799
Q ss_pred EEecCCCCCCC
Q 020954 305 LEFAKSRMGMP 315 (319)
Q Consensus 305 V~~ak~~~~~~ 315 (319)
|+|++.+...+
T Consensus 113 V~~a~~~~~~~ 123 (156)
T 1h2v_Z 113 TDWDAGFKEGR 123 (156)
T ss_dssp EEEESCCCTTC
T ss_pred EEECCCCCCcC
Confidence 99999765443
No 186
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.4e-18 Score=128.50 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=73.5
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..++|||+|||.++|+++|+++|++||.|..|+|+.+. .++||||+|.+.++|.+||+. ||..|. |+.|+|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~V 100 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID----GRVVEP 100 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET----TEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC----CEEEEE
Confidence 46899999999999999999999999999999998753 467999999999999999997 999999 567999
Q ss_pred EecCCCCCCCC
Q 020954 306 EFAKSRMGMPR 316 (319)
Q Consensus 306 ~~ak~~~~~~~ 316 (319)
.|++.+....+
T Consensus 101 ~~a~~~~~~~~ 111 (116)
T 1x4b_A 101 KRAVAREESGS 111 (116)
T ss_dssp ECCSSCCCCCC
T ss_pred EECCCCccCCC
Confidence 99998765543
No 187
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=124.13 Aligned_cols=77 Identities=25% Similarity=0.561 Sum_probs=70.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.+.++|||+|||.++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|| .|+.|+|+|++.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN-RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC-SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 3459999999999999999999999999999999965 45589999999999999999999998 999999999986
Q ss_pred CC
Q 020954 142 NS 143 (319)
Q Consensus 142 ~~ 143 (319)
..
T Consensus 99 ~~ 100 (109)
T 1x4a_A 99 GR 100 (109)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 188
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=127.37 Aligned_cols=77 Identities=25% Similarity=0.361 Sum_probs=71.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|+.||.|..|+|..+ +++++|||||+|.+.++|++|++.|+ .|+.|+|++++
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 3499999999999999999999999999999999876 67889999999999999999999998 99999999998
Q ss_pred cCC
Q 020954 141 SNS 143 (319)
Q Consensus 141 ~~~ 143 (319)
.++
T Consensus 105 ~k~ 107 (108)
T 2jrs_A 105 ERT 107 (108)
T ss_dssp SSC
T ss_pred cCC
Confidence 653
No 189
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=4.1e-18 Score=122.22 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=65.1
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|+++.+ ++|||||+|++.++|. .|+|..+..+ |+.|.|.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~----~~~~~~~~~~--g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQ----SLCGEDLIIK--GISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHH----HHTTCEEEET--TEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHH----HHcCCCcccC--CEEEEEEEc
Confidence 35779999999999999999999999999999999884 7889999999999988 3788877655 778999999
Q ss_pred CCCCC
Q 020954 309 KSRMG 313 (319)
Q Consensus 309 k~~~~ 313 (319)
+.+..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87654
No 190
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-18 Score=125.90 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=70.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
....++|||+|||.++|+++|+++|+.||.|.+|.|..+ .+.++|||||+|.+.++|++|+. ++ .|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 345699999999999999999999999999999999987 68899999999999999999998 66 8999999997
Q ss_pred ccC
Q 020954 140 KSN 142 (319)
Q Consensus 140 ~~~ 142 (319)
+..
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 653
No 191
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=8.9e-19 Score=161.38 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=72.5
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
+.++|||+||+.++|+++|+++|++||.|+.|.|+.+ ..++||||+|.+.++|.+||+.|||..|. |+.|+|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~----gr~i~V 176 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID----GRRVLV 176 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 4679999999999999999999999999999999864 34679999999999999999999999999 667999
Q ss_pred EecCCCCC
Q 020954 306 EFAKSRMG 313 (319)
Q Consensus 306 ~~ak~~~~ 313 (319)
.|++.+..
T Consensus 177 ~~a~~~~~ 184 (437)
T 3pgw_S 177 DVERGRTV 184 (437)
T ss_pred EEeCCCCC
Confidence 99987644
No 192
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=122.79 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=69.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
..++|||+|||.++|+++|+++|++||.|.+|.+....++ ||||+|.+.++|.+|++ |||..|. |+.|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~----g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLG----GHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEET----TEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEEC----CEEEEEEECC
Confidence 3679999999999999999999999999999833333333 99999999999999999 9999999 5679999998
Q ss_pred CCCCCCC
Q 020954 310 SRMGMPR 316 (319)
Q Consensus 310 ~~~~~~~ 316 (319)
.+..+.+
T Consensus 81 ~~~~~~~ 87 (94)
T 2e5g_A 81 QKEFQSP 87 (94)
T ss_dssp CSCCCCC
T ss_pred cCCCCCC
Confidence 7655443
No 193
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=7.6e-18 Score=125.92 Aligned_cols=78 Identities=28% Similarity=0.367 Sum_probs=72.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
..+.++|||+|||.++++++|+++|+.||.|.+|.|..+ ++.++|||||+|.+.++|++|+..|| .|+.|+|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 344599999999999999999999999999999999876 78899999999999999999999998 999999999
Q ss_pred cccC
Q 020954 139 AKSN 142 (319)
Q Consensus 139 a~~~ 142 (319)
++.+
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 9764
No 194
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.1e-18 Score=126.66 Aligned_cols=80 Identities=18% Similarity=0.314 Sum_probs=71.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCC-ceEEEEe-ec----CCCCEEEEEecChHHHHHHHHHhC--CCcccCCCCCC
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPG-FLKLKIQ-ST----YGPPVAFVDFQDTVSSTAALNNLQ--GTILYSSPTSD 301 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~-i~~v~i~-~~----~~~~~aFV~F~~~~~A~~Al~~ln--G~~i~~~~~G~ 301 (319)
+.++|||+|||.++|+++|+++|++||. |.+|++. .+ ..++||||+|.+.++|.+|++.|| +..+. |+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~----g~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW----GH 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT----TB
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec----CC
Confidence 4789999999999999999999999998 9999998 33 456799999999999999999996 58999 55
Q ss_pred eEEEEecCCCCC
Q 020954 302 GIRLEFAKSRMG 313 (319)
Q Consensus 302 ~i~V~~ak~~~~ 313 (319)
.|+|+|++.+..
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 799999997754
No 195
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=5.6e-18 Score=121.58 Aligned_cols=76 Identities=20% Similarity=0.364 Sum_probs=69.6
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
.++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|+ .|||..|. |+.|+|+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~----g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR----GRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET----TEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC----CcEEEEE
Confidence 6799999999999999999999999999999998743 3569999999999999999 99999999 5679999
Q ss_pred ecCCC
Q 020954 307 FAKSR 311 (319)
Q Consensus 307 ~ak~~ 311 (319)
+++.+
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 99874
No 196
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=1.7e-18 Score=127.18 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=71.8
Q ss_pred CCCcceEEEeCCCC------CCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CC-
Q 020954 65 YDEVRTLFVAGLPE------DVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KG- 131 (319)
Q Consensus 65 ~~~~~~l~V~nLp~------~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g- 131 (319)
....++|||+|||. ++++++|+++|++||.|.+|+|..+ +++++|||||+|.+.++|++|++.|| .|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34568999999999 9999999999999999999999887 58999999999999999999999999 77
Q ss_pred cEEEEEEcccC
Q 020954 132 STLYIDLAKSN 142 (319)
Q Consensus 132 ~~l~v~~a~~~ 142 (319)
+.|+|.++...
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998753
No 197
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=7.4e-17 Score=123.20 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=72.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
....++|||+||+.++++++|+++|+.||.|.+|+|..+ +++++|||||+|.+.++|++|+..|| .|+.|+|++|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 445699999999999999999999999999999999887 78899999999999999999999999 9999999999
Q ss_pred ccC
Q 020954 140 KSN 142 (319)
Q Consensus 140 ~~~ 142 (319)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 753
No 198
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=7.3e-18 Score=125.37 Aligned_cols=75 Identities=27% Similarity=0.317 Sum_probs=70.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
...++|||+|||.++++++|+++|+.||.|.+|+|..+ +++++|||||+|.+.++|++|++.|+ .|+.|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 34599999999999999999999999999999999887 88899999999999999999999999 99999999986
No 199
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=3.7e-18 Score=128.60 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=67.0
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCe-----EE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDG-----IR 304 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~-----i~ 304 (319)
..++|||+|||.++|+++|+++|++||.|+.|+|+.+ +||||+|.+.++|++||+.|||..|. |+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFR----SHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCC----CTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEEC----CcEeeeEEEE
Confidence 3678999999999999999999999999999999875 89999999999999999999999999 546 77
Q ss_pred EEecCCCCCCC
Q 020954 305 LEFAKSRMGMP 315 (319)
Q Consensus 305 V~~ak~~~~~~ 315 (319)
|..++.+...+
T Consensus 88 v~~~~~~~~~~ 98 (115)
T 3beg_B 88 VKVDGPRSPSY 98 (115)
T ss_dssp EEECC----CC
T ss_pred eccCCCCCCCC
Confidence 87777654433
No 200
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6e-18 Score=123.74 Aligned_cols=78 Identities=17% Similarity=0.286 Sum_probs=70.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCC---C--CCccEEEEEEcCHHHHHHHHHHcC----CCcEEEE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST---Q--NSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~---~--~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v 136 (319)
.+.++|||+|||.++++++|+++|+.||.|..|.|..+. | .++|||||+|.+.++|++|+..|| .|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 345999999999999999999999999999999998762 3 789999999999999999999999 9999999
Q ss_pred EEcccCC
Q 020954 137 DLAKSNS 143 (319)
Q Consensus 137 ~~a~~~~ 143 (319)
++++...
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997644
No 201
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=123.46 Aligned_cols=75 Identities=28% Similarity=0.450 Sum_probs=69.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--C-CCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--T-QNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~-~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
+.++|||+|||.++++++|+++|+.|| |.+|.|..+ + ++++|||||+|.+.++|++|| .|+ .|+.|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 449999999999999999999999999 999999887 3 889999999999999999999 888 9999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 92 ~~~~ 95 (104)
T 1wi8_A 92 DQAQ 95 (104)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8644
No 202
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4.4e-18 Score=124.70 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=71.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCcc-EEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcE----
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYE-SSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGST---- 133 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~---- 133 (319)
..+.++|||+|||.++++++|+++|++||.|. +|+|..+ +++++|||||+|.+.++|++|++.|| .|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34569999999999999999999999999999 9999887 78899999999999999999999999 7887
Q ss_pred EEEEEcccC
Q 020954 134 LYIDLAKSN 142 (319)
Q Consensus 134 l~v~~a~~~ 142 (319)
|+|+|++..
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998754
No 203
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=1.3e-18 Score=125.15 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=65.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCC--CccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFP--GYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
.+|||+|||.++++++|+++|+.|| .|.+++|..+ +|+++|||||+|.+.++|++|++.|| .|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 9999999887 88999999999999999999999999 99999998887
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 204
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=7.4e-18 Score=120.42 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=67.0
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|+++.+.. ++||||+|.+.++|.+|++ ++|..|. |+.|+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i~ 83 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD----GRVID 83 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC----CEEEE
Confidence 4578999999999999999999999999999999987543 4599999999999999996 5888898 66799
Q ss_pred EEec
Q 020954 305 LEFA 308 (319)
Q Consensus 305 V~~a 308 (319)
|.+|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 205
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=7.2e-18 Score=124.93 Aligned_cols=77 Identities=13% Similarity=0.212 Sum_probs=70.8
Q ss_pred CCCcceEEEeCCCCCC------CHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCc-E
Q 020954 65 YDEVRTLFVAGLPEDV------KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGS-T 133 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~-~ 133 (319)
....++|||+|||.++ ++++|+++|++||.|.+|.|...+|+++|||||+|.+.++|++|+..|| .|+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3345899999999999 7899999999999999999987789999999999999999999999999 888 9
Q ss_pred EEEEEccc
Q 020954 134 LYIDLAKS 141 (319)
Q Consensus 134 l~v~~a~~ 141 (319)
|+|.++..
T Consensus 92 l~V~~a~~ 99 (105)
T 2nlw_A 92 FRVNLFTD 99 (105)
T ss_dssp EEEECSCC
T ss_pred EEEEEcch
Confidence 99999864
No 206
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=121.60 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=72.1
Q ss_pred CCCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
..+.++|||+|||.++|+++|+++|++||.|.+|++..+.. ++||||+|.+.++|.+||+ ++..|. |+.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~----g~~l 85 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID----GRWC 85 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET----TEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC----CeEE
Confidence 34578999999999999999999999999999999987543 4599999999999999999 477888 5679
Q ss_pred EEEecCCCCCCCC
Q 020954 304 RLEFAKSRMGMPR 316 (319)
Q Consensus 304 ~V~~ak~~~~~~~ 316 (319)
+|.|++.+....+
T Consensus 86 ~v~~a~~~~~~~~ 98 (103)
T 2cqg_A 86 DCKLPNSKQSQDS 98 (103)
T ss_dssp EEECCCTTCCCCC
T ss_pred EEEecCCCCcCCC
Confidence 9999998765543
No 207
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=5.8e-18 Score=130.09 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=71.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.+.++|||+|||.++++++|+++|++||.|..|+|..+ +++++|||||+|.+.++|++|++.|+ .|+.|+|+|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34599999999999999999999999999999999887 68899999999999999999999998 8999999998
Q ss_pred ccC
Q 020954 140 KSN 142 (319)
Q Consensus 140 ~~~ 142 (319)
+.+
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 753
No 208
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=2e-18 Score=121.68 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=63.7
Q ss_pred cCEEEEcCCCCCC------CHHHHHHHhhcCCCceEEEEeec--CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCC-
Q 020954 231 CATLFVANLGPTC------TEQELTQVFSKCPGFLKLKIQST--YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSD- 301 (319)
Q Consensus 231 ~~~l~V~nLp~~~------t~~~L~~~F~~fG~i~~v~i~~~--~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~- 301 (319)
+++|||+|||.++ |+++|+++|++||.|.+|++... ..+|||||+|.+.++|.+|++.|||..|. |+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~----g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS----SSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC----Cce
Confidence 3689999999999 78999999999999999998742 34679999999999999999999999999 54
Q ss_pred eEEEE
Q 020954 302 GIRLE 306 (319)
Q Consensus 302 ~i~V~ 306 (319)
.|+|+
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 57763
No 209
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=3.7e-18 Score=122.27 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=69.8
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
.+++|||+|||.++++++|+++|++| .|.+|++. ..++||||+|.+.++|.+|++.|||..+. |+.|+|+|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFR----GKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEET----TEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEEEEcC
Confidence 36789999999999999999999999 99999986 56789999999999999999999999999 5679999998
Q ss_pred CCC
Q 020954 310 SRM 312 (319)
Q Consensus 310 ~~~ 312 (319)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 754
No 210
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=120.68 Aligned_cols=77 Identities=18% Similarity=0.175 Sum_probs=69.8
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
..++|||+|||.++|+++|+++|+.| .|.+|+++.+. .++||||+|.+.++|.+||+ |||..|+ |+.|+|.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~----gr~i~v~ 82 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG----GRYIEVF 82 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET----TEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC----CcEEEEE
Confidence 47799999999999999999999999 99999998752 24599999999999999999 9999999 5579999
Q ss_pred ecCCCC
Q 020954 307 FAKSRM 312 (319)
Q Consensus 307 ~ak~~~ 312 (319)
+++.+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 211
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=125.15 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=72.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCcc--------EEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----C
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYE--------SSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----K 130 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~ 130 (319)
..+.++|||+|||.++++++|+++|+.||.|. .|+|..+ +++++|||||+|.+.++|++|++.|| .
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44569999999999999999999999999998 6888876 78899999999999999999999998 9
Q ss_pred CcEEEEEEcccCC
Q 020954 131 GSTLYIDLAKSNS 143 (319)
Q Consensus 131 g~~l~v~~a~~~~ 143 (319)
|+.|+|.+++.+.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999998643
No 212
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=125.85 Aligned_cols=77 Identities=21% Similarity=0.396 Sum_probs=71.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
....++|||+|||.++++++|+++|+.||.|..|+|..+ ++.++|||||+|.+.++|++|| .|| .|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 445699999999999999999999999999999999887 5889999999999999999999 888 999999999
Q ss_pred cccC
Q 020954 139 AKSN 142 (319)
Q Consensus 139 a~~~ 142 (319)
++..
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8754
No 213
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=124.27 Aligned_cols=80 Identities=25% Similarity=0.381 Sum_probs=67.8
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+.++|||+|||.++|+++|+++|+.|+ .|+++.+. .++||||+|.+.++|.+||+.|||..|. |+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID----GNKVT 85 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC----CeEEE
Confidence 4578999999999999999999999885 45555432 3469999999999999999999999999 55799
Q ss_pred EEecCCCCCCC
Q 020954 305 LEFAKSRMGMP 315 (319)
Q Consensus 305 V~~ak~~~~~~ 315 (319)
|+|++.+....
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 2fc8_A 86 LDWAKPKGEGG 96 (102)
T ss_dssp EEECCCCCSSS
T ss_pred EEEecCCCCCC
Confidence 99999875543
No 214
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-18 Score=126.19 Aligned_cols=73 Identities=29% Similarity=0.461 Sum_probs=67.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC---CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS---TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~---~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
.++|||+||+.++++++|+++|+.|| |.+|+|..+ +++++|||||+|.+.++|++|+ .|+ .|+.|+|++++
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 39999999999999999999999999 999999876 5889999999999999999999 888 99999999987
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
..
T Consensus 97 ~~ 98 (100)
T 2j76_E 97 QA 98 (100)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 215
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.74 E-value=8.9e-18 Score=139.57 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=71.9
Q ss_pred CcCEEEEcCCC-CCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 230 PCATLFVANLG-PTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 230 ~~~~l~V~nLp-~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
++++|||+||+ .++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+||+.|||..+. |+.|+|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~----g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMF----GQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEET----TEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEEC----CceEEEEEc
Confidence 47899999999 89999999999999999999999874 5789999999999999999999999999 668999999
Q ss_pred CCCC
Q 020954 309 KSRM 312 (319)
Q Consensus 309 k~~~ 312 (319)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8643
No 216
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=121.41 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=69.4
Q ss_pred CcceEEEeCCCCCCCHHHHH----HHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 67 EVRTLFVAGLPEDVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
+.++|||+|||.++++++|+ ++|++||.|.+|+|..+... +|||||+|.+.++|++|++.|| .|+.|+|++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45899999999999999999 99999999999999987444 8999999999999999999999 999999999
Q ss_pred cccC
Q 020954 139 AKSN 142 (319)
Q Consensus 139 a~~~ 142 (319)
++..
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9754
No 217
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=122.56 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=71.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC--CCcEEEEEEcc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDLAK 140 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~--~g~~l~v~~a~ 140 (319)
..+.++|||+|||.++++++|+++|+.||.|..|.|..+ +++++|||||+|.+.++|++|+...+ .|+.|+|.+++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecC
Confidence 344589999999999999999999999999999999887 68999999999999999999998644 89999999998
Q ss_pred cCCc
Q 020954 141 SNSR 144 (319)
Q Consensus 141 ~~~~ 144 (319)
.+..
T Consensus 92 ~~~~ 95 (103)
T 2cqg_A 92 SKQS 95 (103)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 6543
No 218
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=1e-17 Score=117.17 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=65.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
...|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.|| .|+.|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 47899999999999999999999999999999964 79999999999999999999999 99999999984
No 219
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=130.51 Aligned_cols=76 Identities=24% Similarity=0.374 Sum_probs=69.0
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+.++|||+|||.++|+++|+++|++||.|.+|++..+ ..++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 136 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 136 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET----TEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC----CEEEE
Confidence 45789999999999999999999999999999999764 34679999999999999999999999999 56799
Q ss_pred EEec
Q 020954 305 LEFA 308 (319)
Q Consensus 305 V~~a 308 (319)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 220
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=3.2e-18 Score=124.41 Aligned_cols=77 Identities=19% Similarity=0.102 Sum_probs=67.7
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
+.++|||+|||.++|+++|+++|++||.|..++++.+. .++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEE
Confidence 46799999999999999999999999999887777633 3459999999999999999999999999 567999
Q ss_pred EecCC
Q 020954 306 EFAKS 310 (319)
Q Consensus 306 ~~ak~ 310 (319)
+++++
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 99864
No 221
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=6.1e-18 Score=125.61 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=66.4
Q ss_pred CcceEEEeCCCCC-CCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEEEEc
Q 020954 67 EVRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYIDLA 139 (319)
Q Consensus 67 ~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v~~a 139 (319)
+.++|||+|||++ +++++|+++|++||.|.+|.|.. ++|||||+|.+.++|++|++.|+ .|+.|+|+|+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 4599999999998 99999999999999999999963 58999999999999999999774 8999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 100 ~~~~ 103 (112)
T 1x4f_A 100 EKYK 103 (112)
T ss_dssp CSCS
T ss_pred cccc
Confidence 7644
No 222
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=124.87 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=71.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
...++|||+|||.++++++|+++|+.||.|.+|+|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 34599999999999999999999999999999999887 78889999999999999999999999 99999999987
Q ss_pred c
Q 020954 141 S 141 (319)
Q Consensus 141 ~ 141 (319)
.
T Consensus 93 ~ 93 (114)
T 2do0_A 93 R 93 (114)
T ss_dssp C
T ss_pred c
Confidence 5
No 223
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=123.57 Aligned_cols=78 Identities=19% Similarity=0.312 Sum_probs=71.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
..+.++|||+|||.++++++|+++|+.||.|.+|+|..+ ++.++|||||+|.+.++|++||.. + .|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 455699999999999999999999999999999999887 788999999999999999999998 7 999999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
++.+.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87643
No 224
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-18 Score=126.14 Aligned_cols=80 Identities=26% Similarity=0.326 Sum_probs=69.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee----cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~----~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..++|||+|||.++|+++|+++|++||.|.. .++. ...++||||+|.+.++|.+||+ |||..|. |+.|+|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~----g~~l~V 89 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF----GNEIKL 89 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT----TBCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC----CcEEEE
Confidence 4779999999999999999999999998876 3322 4567899999999999999999 9999999 557999
Q ss_pred EecCCCCCCC
Q 020954 306 EFAKSRMGMP 315 (319)
Q Consensus 306 ~~ak~~~~~~ 315 (319)
.|++.+...+
T Consensus 90 ~~a~~~~~~~ 99 (101)
T 1fj7_A 90 EKPKGRDGTR 99 (101)
T ss_dssp ECCSCCCCSS
T ss_pred EEcCCCCCCC
Confidence 9999875544
No 225
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.1e-18 Score=126.92 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=65.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.++|||+|||.++++++|+++|+.||.|.++++. +++|||||+|.+.++|++|+..|| .|+.|+|+|++.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 4899999999999999999999999999999997 468999999999999999999998 999999999875
No 226
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=8.1e-18 Score=133.48 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=69.9
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCC--CceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCP--GFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG--~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
..++|||+|||.++|+++|+++|+.|| .|.+|+|+.+. .+|||||+|.+.++|.+||+.|||..|. |+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~----Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN----GEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEe
Confidence 467999999999999999999999999 99999998753 3459999999999999999999999999 6679
Q ss_pred EEEecCCC
Q 020954 304 RLEFAKSR 311 (319)
Q Consensus 304 ~V~~ak~~ 311 (319)
+|.|++.+
T Consensus 130 ~V~~a~~~ 137 (156)
T 3n9u_C 130 DVRPATRQ 137 (156)
T ss_dssp EEEECCHH
T ss_pred EEEEcCCC
Confidence 99999764
No 227
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=4.6e-18 Score=117.94 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=64.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
+|||+|||.++|+++|+++|++||.|.+|++..+. +++||||+|.+.++|++|++ |||..|. |+.|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~----g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN----NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS----SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC----CEEEEEEeC
Confidence 49999999999999999999999999999998643 35699999999999999998 9999999 557999986
No 228
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.1e-17 Score=119.93 Aligned_cols=75 Identities=19% Similarity=0.371 Sum_probs=70.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|+.||.|.++++..+ +++++|||||+|.+.++|++|+ .++ .|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4589999999999999999999999999999999887 7889999999999999999999 888 99999999987
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
.+
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 229
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1.7e-17 Score=127.11 Aligned_cols=78 Identities=24% Similarity=0.354 Sum_probs=72.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.+.++|||+|||.++++++|+++|+.||.|.+|.|..+ ++.++|||||+|.+.++|++|++.|| .|+.|+|+|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34599999999999999999999999999999999887 88899999999999999999999999 9999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 100 ~~~~ 103 (126)
T 3ex7_B 100 FVRG 103 (126)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7644
No 230
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.5e-18 Score=124.93 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=66.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
++|||+|||.++++++|+++|++||.|.+|++..+. .++||||+|.+.+ |.+|++.|||..+. |+.|+|+|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~----g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM----GRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS----SSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC----CeEEEEEE
Confidence 479999999999999999999999999999998643 3669999999999 99999999999999 55799999
Q ss_pred cCCCCC
Q 020954 308 AKSRMG 313 (319)
Q Consensus 308 ak~~~~ 313 (319)
|..+..
T Consensus 77 a~~~~~ 82 (90)
T 2ki2_A 77 ANPKKS 82 (90)
T ss_dssp C-----
T ss_pred cCCCCC
Confidence 987643
No 231
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3e-18 Score=121.91 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=66.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
+.++|||+|||.++++++|+++|++||.|.++.|..+ ++.++|||||+|.+.++|++|++.|| .|+.|++.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4599999999999999999999999999999999887 78899999999999999999999998 6666666544
No 232
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=126.74 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=68.9
Q ss_pred cceEEEeCCCCCCCHHHHH----HHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 68 VRTLFVAGLPEDVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.++|||+||++++++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|+..|| .|+.|+|+|+
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 4899999999999999875 7999999999988754 67889999999999999999999999 9999999999
Q ss_pred ccCCc
Q 020954 140 KSNSR 144 (319)
Q Consensus 140 ~~~~~ 144 (319)
+.+..
T Consensus 108 ~~~~~ 112 (127)
T 2a3j_A 108 ETPQS 112 (127)
T ss_dssp CCCCH
T ss_pred cCcch
Confidence 87554
No 233
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=6.5e-18 Score=132.44 Aligned_cols=81 Identities=21% Similarity=0.426 Sum_probs=70.3
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceE--------EEEe-ecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLK--------LKIQ-STYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~--------v~i~-~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
.++++|||+|||.++|+++|+++|++||.|.. +++. ....++||||+|.+.++|.+|++.|||..|.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~---- 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF---- 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC----
Confidence 35789999999999999999999999999876 4433 3456779999999999999999999999999
Q ss_pred CCeEEEEecCCCCC
Q 020954 300 SDGIRLEFAKSRMG 313 (319)
Q Consensus 300 G~~i~V~~ak~~~~ 313 (319)
|+.|+|+|++....
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 66899999987543
No 234
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.9e-17 Score=122.23 Aligned_cols=75 Identities=21% Similarity=0.374 Sum_probs=69.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|+.|| |.+|+|..+ +++++|||||+|.+.++|++|+ .|| .|+.|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 459999999999999999999999997 999999887 6889999999999999999999 788 99999999997
Q ss_pred cCC
Q 020954 141 SNS 143 (319)
Q Consensus 141 ~~~ 143 (319)
...
T Consensus 92 ~~~ 94 (103)
T 2dng_A 92 GRK 94 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 235
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.9e-18 Score=125.61 Aligned_cols=78 Identities=29% Similarity=0.480 Sum_probs=72.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
...++|||+|||.++++++|+++|+.||.|..+.|..+ ++.++|||||+|.+.++|++|++.|| .|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45699999999999999999999999999999999876 78889999999999999999999999 9999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7644
No 236
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.4e-18 Score=117.80 Aligned_cols=72 Identities=19% Similarity=0.235 Sum_probs=65.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
++|||+|||.++|+++|+++|++||.|.+|++..+. +++||||+|.+.++|.+|++.+| ..+. |+.|+|+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~----g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD----SKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS----SCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC----CEEEEEEe
Confidence 479999999999999999999999999999998743 36799999999999999999999 9998 55799998
Q ss_pred c
Q 020954 308 A 308 (319)
Q Consensus 308 a 308 (319)
|
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 7
No 237
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=1.7e-17 Score=126.82 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=71.3
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|+ .|||..|. |+.|+|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR----GRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEE
Confidence 36799999999999999999999999999999998642 3569999999999999999 79999999 567999
Q ss_pred EecCCCCCC
Q 020954 306 EFAKSRMGM 314 (319)
Q Consensus 306 ~~ak~~~~~ 314 (319)
+|++.....
T Consensus 110 ~~a~~~~~~ 118 (124)
T 2jwn_A 110 LPKRTNMPG 118 (124)
T ss_dssp EESSCCCSS
T ss_pred EECCCCCCC
Confidence 999876443
No 238
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=123.36 Aligned_cols=78 Identities=21% Similarity=0.367 Sum_probs=71.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhc-CCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC-----CCcEEEEEE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFRE-FPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDL 138 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~-----~g~~l~v~~ 138 (319)
.+.++|||+|||.++++++|+++|+. ||.|.+|+|..+ ++.++|||||+|.+.++|++|++.|+ .|+.|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 34599999999999999999999999 999999999887 88899999999999999999999988 688999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
++.+.
T Consensus 87 a~~~~ 91 (104)
T 2dhg_A 87 AIPKA 91 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87543
No 239
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=121.75 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=68.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..++|||+|||.++++++|+++|+.||.|..+.++.+ +++++|||||+|.+.++|++|++.|| .|+.|+|++++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 3489999999999999999999999999976655544 78899999999999999999999999 99999999987
Q ss_pred c
Q 020954 141 S 141 (319)
Q Consensus 141 ~ 141 (319)
.
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 5
No 240
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=9.4e-17 Score=125.24 Aligned_cols=74 Identities=28% Similarity=0.443 Sum_probs=68.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.+.++|||+|||.++++++|+++|++||.|..++|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|+||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 34599999999999999999999999999999999887 78899999999999999999999999 9999999875
No 241
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-17 Score=123.10 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=71.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
....++|||+|||.++++++|+++|+.||.|..|.|..+ +++++|||||+|.+.++|++||.. + .|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 344699999999999999999999999999999999987 688999999999999999999987 6 999999999
Q ss_pred cccCCc
Q 020954 139 AKSNSR 144 (319)
Q Consensus 139 a~~~~~ 144 (319)
++.+..
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 986543
No 242
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=117.38 Aligned_cols=72 Identities=22% Similarity=0.455 Sum_probs=66.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.+.++|||+|||.++++++|+++|++||.|.+|.+. +|||||+|.+.++|++|++.|| .|+.|+|+|++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 445999999999999999999999999999999997 6899999999999999999998 899999999986
Q ss_pred CC
Q 020954 142 NS 143 (319)
Q Consensus 142 ~~ 143 (319)
..
T Consensus 80 ~~ 81 (90)
T 2dnq_A 80 KS 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 243
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.9e-18 Score=117.65 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=67.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (319)
++|||+|||.++++++|+++|++||.|.++.+..+ +++++|||||+|.+.++|++|++.++ .|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 58999999999999999999999999999999887 68899999999999999999999888 8999999886
No 244
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=124.33 Aligned_cols=78 Identities=9% Similarity=0.201 Sum_probs=70.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCc-cEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGY-ESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
..+.++|||+|||+++|+++|+++|+.||.| ..|+|..+ +++++|||||+|.+.++|++||+. | .|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3445999999999999999999999999999 88999887 788999999999999999999987 7 999999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
+..+.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86543
No 245
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=125.74 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=70.2
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCc-eEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGF-LKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i-~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
.+.++|||+|||.++|+++|+++|+.||.| .+|+|+.+. .++||||+|.+.++|.+||+. ||..|. |+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~----gr~i~ 87 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN----GREAF 87 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET----TEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC----CeEEE
Confidence 347899999999999999999999999999 889988643 467999999999999999997 999999 56799
Q ss_pred EEecCCCC
Q 020954 305 LEFAKSRM 312 (319)
Q Consensus 305 V~~ak~~~ 312 (319)
|.+++.+.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997653
No 246
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=3.2e-17 Score=124.44 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=69.9
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
.++++|||+|| ++|+++|+++|++||.|.+|++. ..++||||+|.+.++|.+|++.|||..|. |+.|+|+|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~----g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCS----SCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEEe
Confidence 35789999996 69999999999999999999997 56789999999999999999999999998 557999999
Q ss_pred CCCCCC
Q 020954 309 KSRMGM 314 (319)
Q Consensus 309 k~~~~~ 314 (319)
+.+...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 987543
No 247
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=123.35 Aligned_cols=77 Identities=23% Similarity=0.393 Sum_probs=70.0
Q ss_pred CcceEEEeCCCCCCCHHHHH---HHhhcCCCccEEEEecCCC-----CCccEEEEEEcCHHHHHHHHHHcC----CCcEE
Q 020954 67 EVRTLFVAGLPEDVKPREIY---NLFREFPGYESSHLRSSTQ-----NSQPFAFAVFSDQQSALGAMYALN----KGSTL 134 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~---~~F~~~G~v~~v~i~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~----~g~~l 134 (319)
..++|||+|||.++++++|+ ++|++||.|.+|.|..+.. +++|||||+|.+.++|++|++.|| .|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 35899999999999999999 9999999999999988732 566999999999999999999999 99999
Q ss_pred EEEEcccCC
Q 020954 135 YIDLAKSNS 143 (319)
Q Consensus 135 ~v~~a~~~~ 143 (319)
+|+|++.+.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998643
No 248
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-17 Score=120.02 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=68.9
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceE-EEEeec---CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLK-LKIQST---YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~-v~i~~~---~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..++|||+|||+++|+++|+++|++||.|.+ |+|..+ ..+|||||+|.+.++|.+||+. ||..|+ ||.|+|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~----gr~i~v 88 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG----HRYIEI 88 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS----SSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC----CcEEEE
Confidence 4779999999999999999999999999987 887653 3467999999999999999997 999999 556999
Q ss_pred EecCCCC
Q 020954 306 EFAKSRM 312 (319)
Q Consensus 306 ~~ak~~~ 312 (319)
.++..+.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9987654
No 249
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=4.4e-17 Score=118.80 Aligned_cols=69 Identities=23% Similarity=0.476 Sum_probs=64.9
Q ss_pred cceEEEeCCCC-CCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 68 VRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 68 ~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
.++|||+||+. ++++++|+++|+.||.|.++.|. +|||||+|.+.++|++|+..|| .|+.|+|++++.+
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 39999999998 99999999999999999999984 7999999999999999999998 8999999999864
No 250
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=118.88 Aligned_cols=75 Identities=13% Similarity=0.257 Sum_probs=68.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCC--C-CCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSST--Q-NSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~--~-~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
.++|||+|||.++++++|+++|++||.|.++.|..+. + +++|||||+|.+.++|++|++.|| .|+.|+|+++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 4899999999999999999999999999999998763 3 389999999999999999999999 99999999986
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
..
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 251
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7e-17 Score=118.70 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=67.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
..+.++|||+|||.++++++|+++|++||.| ++..+ +++++|||||+|.+.++|++|+..|| .|+.|+|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3456999999999999999999999999976 45544 78899999999999999999999999 9999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 89 ~~~~ 92 (101)
T 2fc9_A 89 GPRG 92 (101)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8643
No 252
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=2.9e-17 Score=122.15 Aligned_cols=71 Identities=25% Similarity=0.385 Sum_probs=66.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
..++|||+|||.++++++|+++|++||.|..|.+. +|||||+|.+.++|++|+..|| .|+.|+|+|++..
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34999999999999999999999999999999997 7999999999999999999998 9999999999764
Q ss_pred C
Q 020954 143 S 143 (319)
Q Consensus 143 ~ 143 (319)
.
T Consensus 104 ~ 104 (108)
T 2jvo_A 104 A 104 (108)
T ss_dssp C
T ss_pred C
Confidence 3
No 253
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=117.03 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=69.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
...++|||+|||.++++++|+++|+.| .|.+|+|..+ +++++|||||+|.+.++|++|+. +| .|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 345999999999999999999999999 8999999887 88899999999999999999999 88 99999999987
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 254
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=127.14 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=69.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccE--EEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC--------CCcE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYES--SHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN--------KGST 133 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~--------~g~~ 133 (319)
...++|||+|||+++|+++|+++|++||.|.. |+|+.+ +++++|||||+|.+. +|.+|+..|| .|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45699999999999999999999999999966 999887 789999999999999 9999999987 6889
Q ss_pred EEEEEcccC
Q 020954 134 LYIDLAKSN 142 (319)
Q Consensus 134 l~v~~a~~~ 142 (319)
|+|++++..
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999753
No 255
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.3e-17 Score=115.67 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=64.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 70 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
+|||+|||.++++++|+++|++||.|.++.+..+ +++++|||||+|.+.++|++|++ ++ .|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999887 78899999999999999999997 77 8999999875
No 256
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.5e-17 Score=119.91 Aligned_cols=75 Identities=20% Similarity=0.146 Sum_probs=68.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccE-EEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYES-SHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
...++|||+|||+++++++|+++|+.||.|.. |.|..+ +++++|||||+|.+.++|++||.. + .|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34599999999999999999999999999987 888777 889999999999999999999987 6 8999999887
Q ss_pred cc
Q 020954 140 KS 141 (319)
Q Consensus 140 ~~ 141 (319)
..
T Consensus 92 ~~ 93 (104)
T 1wg5_A 92 SR 93 (104)
T ss_dssp CT
T ss_pred CH
Confidence 64
No 257
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=118.83 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=66.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----C--CcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----K--GSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~--g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|| . |+.|+|+|++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 3489999999999999999999999999999998753 7899999999999999999998 6 8999999998
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
.+
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 258
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=9.9e-18 Score=121.83 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=67.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.++|||+|||.++++++|+++|++||.|..+.++.+ +++++|||||+|.+.++|++|++.|| .|+.|+|+++.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 399999999999999999999999999987766654 77899999999999999999999988 999999998764
No 259
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.2e-17 Score=118.49 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=66.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
....++|||+|||.++++++|+++|+.||.|. +.+.. ++++|||||+|.+.++|++|++.|| .|+.|+|++++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW--QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE--ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc--CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34458999999999999999999999999996 55554 5789999999999999999999999 99999999997
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
.+
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 260
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.1e-17 Score=118.21 Aligned_cols=74 Identities=23% Similarity=0.388 Sum_probs=67.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.+.++|||+|||.++++++|+++|++||.|..|++.. ++|||||+|.+.++|++|++.|+ .|+.|+|+|++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 3459999999999999999999999999999999974 47999999999999999999998 999999999986
Q ss_pred CC
Q 020954 142 NS 143 (319)
Q Consensus 142 ~~ 143 (319)
+.
T Consensus 89 ~~ 90 (99)
T 2cpj_A 89 SA 90 (99)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 261
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=7.8e-19 Score=132.65 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=73.0
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceE--------EEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccC
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLK--------LKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYS 296 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~--------v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~ 296 (319)
.++++|||+|||.++|+++|+++|++||.|.. |++..+ ..++||||+|.+.++|.+|++.|||..|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 83 (116)
Confidence 45789999999999999999999999999998 888764 34679999999999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCC
Q 020954 297 SPTSDGIRLEFAKSRMGM 314 (319)
Q Consensus 297 ~~~G~~i~V~~ak~~~~~ 314 (319)
|+.|+|+|++.+...
T Consensus 84 ---g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 ---GNPIKVSFATRRADF 98 (116)
Confidence 557999999987554
No 262
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=2.5e-17 Score=125.82 Aligned_cols=75 Identities=15% Similarity=0.332 Sum_probs=70.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|+.||.|.+|.|..+ ++.++|||||+|.+.++|++|+ .|+ .|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4699999999999999999999999999999999876 7889999999999999999999 788 99999999987
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 263
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=4.1e-17 Score=121.44 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=66.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCC-CccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFP-GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
..+|||+|||+++++++|+++|++|| .|..+.|.. ++++|||||+|.+.++|++|++.|| .|+.|+|++++..
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~--~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT--RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS--CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc--CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 38999999999999999999999999 899998864 4579999999999999999999999 9999999998753
No 264
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.6e-17 Score=128.65 Aligned_cols=78 Identities=24% Similarity=0.407 Sum_probs=72.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
..+.++|||+|||.++++++|+++|+.||.|..|+|..+ +++++|||||+|.+.++|++|++.|| .|+.|+|+|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 445699999999999999999999999999999999887 78899999999999999999999988 999999999
Q ss_pred cccC
Q 020954 139 AKSN 142 (319)
Q Consensus 139 a~~~ 142 (319)
++..
T Consensus 124 a~~~ 127 (135)
T 2lea_A 124 ARYG 127 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9864
No 265
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.6e-17 Score=114.87 Aligned_cols=71 Identities=25% Similarity=0.393 Sum_probs=65.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHc-C----CCcEEEEEEcc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYAL-N----KGSTLYIDLAK 140 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l-~----~g~~l~v~~a~ 140 (319)
...++|||+|||.++++++|+++|++||.|.++++.. ++|||||+|.+.++|++|+..| + .|+.|+|+|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4459999999999999999999999999999999985 4799999999999999999988 6 89999999985
No 266
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=114.95 Aligned_cols=72 Identities=18% Similarity=0.335 Sum_probs=66.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
.+.++|||+|||.++++++|+++|++||.|.+|.+. ++||||+|.+.++|++|+..|| .|+.|+|++++.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 445999999999999999999999999999999997 4599999999999999999999 999999999986
Q ss_pred CC
Q 020954 142 NS 143 (319)
Q Consensus 142 ~~ 143 (319)
+.
T Consensus 82 ~~ 83 (92)
T 2dgt_A 82 RL 83 (92)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 267
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=5.9e-17 Score=128.87 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=72.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.+.++|||+|||.++|+++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|++||+.|| .|+.|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34599999999999999999999999999999999887 68899999999999999999999999 9999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 268
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.1e-17 Score=118.76 Aligned_cols=80 Identities=15% Similarity=0.095 Sum_probs=68.8
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
..++|||+|||+++|+++|+++|++|| +++|+|+.+. .++||||+|.+.++|++||+ +||..|+ ||.|+|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~i~V~ 87 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ----HRYVELF 87 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS----SSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC----CcEEEEE
Confidence 467999999999999999999999999 4599998754 24599999999999999995 8999999 4569999
Q ss_pred ecCCCCCCC
Q 020954 307 FAKSRMGMP 315 (319)
Q Consensus 307 ~ak~~~~~~ 315 (319)
++......+
T Consensus 88 ~~~~~~~~~ 96 (102)
T 1wez_A 88 LNSTAGTSG 96 (102)
T ss_dssp EECCCCCCC
T ss_pred ECCCCCCCC
Confidence 988765443
No 269
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.4e-17 Score=119.49 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=68.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
..+..+|||+|||+++|+++|+++|+.| .|.+|.|..+ .|+++|||||+|.+.++|++|| .+| .|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3445899999999999999999999999 8999999887 7889999999999999999999 677 8999999887
Q ss_pred cc
Q 020954 140 KS 141 (319)
Q Consensus 140 ~~ 141 (319)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 270
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=119.02 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=66.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CC-----cEEEEEE
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KG-----STLYIDL 138 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g-----~~l~v~~ 138 (319)
.++|||+|||.++++++|+++|++||.|..|.|..+ |||||+|.+.++|++||+.|| .| +.|+|++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 489999999999999999999999999999999875 899999999999999999999 77 9999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
++...
T Consensus 90 a~~~~ 94 (108)
T 1x4c_A 90 DGPRS 94 (108)
T ss_dssp SSCCS
T ss_pred CCCCC
Confidence 98644
No 271
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=117.44 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=62.7
Q ss_pred ceEEEeCCCCCC------CHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCc-EEEE
Q 020954 69 RTLFVAGLPEDV------KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGS-TLYI 136 (319)
Q Consensus 69 ~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~-~l~v 136 (319)
++|||+|||.++ ++++|+++|++||.|.+|.|..++|+++|||||+|.+.++|++|++.|| .|+ .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 799999999999 7799999999999999999987789999999999999999999999998 676 6655
No 272
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=8.3e-17 Score=128.26 Aligned_cols=77 Identities=25% Similarity=0.417 Sum_probs=72.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
...++|||+|||.++++++|+++|+.||.|.+|+|..+ +++++|||||+|.+.++|++|+..|| .|+.|+|.|+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34599999999999999999999999999999999987 78999999999999999999999999 9999999999
Q ss_pred ccC
Q 020954 140 KSN 142 (319)
Q Consensus 140 ~~~ 142 (319)
+..
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 864
No 273
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=5.3e-17 Score=131.57 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=73.2
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec---CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST---YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~---~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.++++|||+|||.++|+++|+++|++||.|+.|.|..+ ..++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~----Gr~l~V 161 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPMDI 161 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS----SSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEEE
Confidence 45789999999999999999999999999999999874 34679999999999999999999999999 557999
Q ss_pred EecCCCCC
Q 020954 306 EFAKSRMG 313 (319)
Q Consensus 306 ~~ak~~~~ 313 (319)
+|+.....
T Consensus 162 ~~a~~~~~ 169 (177)
T 2f3j_A 162 QLVASQID 169 (177)
T ss_dssp EEESSGGG
T ss_pred EEecCCCC
Confidence 99987643
No 274
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.8e-17 Score=120.17 Aligned_cols=75 Identities=17% Similarity=0.293 Sum_probs=68.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
...++|||+|||.++++++|+++|+.||.|..|+|..+ +|||||+|.+.++|++|+..|+ .|+.|+|.|++.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 34599999999999999999999999999999999864 7999999999999999999998 999999999986
Q ss_pred CCc
Q 020954 142 NSR 144 (319)
Q Consensus 142 ~~~ 144 (319)
...
T Consensus 99 ~~~ 101 (109)
T 1x4g_A 99 SPD 101 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 275
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=5.5e-17 Score=122.71 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=69.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCC---ccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPG---YESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (319)
.+.++|||+|||+++|+++|+++|+.||. |..|+|..+ .++++|||||+|.+.++|++||+ ++ .|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 44589999999999999999999999999 889999877 78899999999999999999998 78 99999999
Q ss_pred EcccC
Q 020954 138 LAKSN 142 (319)
Q Consensus 138 ~a~~~ 142 (319)
++...
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 276
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=8.2e-18 Score=121.00 Aligned_cols=73 Identities=21% Similarity=0.356 Sum_probs=67.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
++|||+|||.++++++|+++|++||.|.++.+..+ +++++|||||+|.+.+ |.+|+..|| .|+.|+|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 79999999999999999999999999999999887 6889999999999999 999999999 9999999998754
No 277
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=4.6e-17 Score=125.72 Aligned_cols=75 Identities=12% Similarity=0.093 Sum_probs=69.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCC---ccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPG---YESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (319)
.+.++|||+|||+++|+++|+++|+.||. |.+|+|..+ .|+++|||||+|.+.++|++||+ +| .|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 34589999999999999999999999999 889999877 78899999999999999999998 88 99999999
Q ss_pred Eccc
Q 020954 138 LAKS 141 (319)
Q Consensus 138 ~a~~ 141 (319)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9854
No 278
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.3e-17 Score=121.33 Aligned_cols=77 Identities=16% Similarity=0.308 Sum_probs=70.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC------------CCc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN------------KGS 132 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~------------~g~ 132 (319)
.+.++|||+|||.++++++|+++|+.||.|..|+|..+ ++.++|||||+|.+.++|++|++.|| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 34589999999999999999999999999999999887 78889999999999999999999998 267
Q ss_pred EEEEEEcccC
Q 020954 133 TLYIDLAKSN 142 (319)
Q Consensus 133 ~l~v~~a~~~ 142 (319)
.|+|.|++..
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998753
No 279
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=2.2e-17 Score=120.45 Aligned_cols=76 Identities=22% Similarity=0.362 Sum_probs=69.5
Q ss_pred CcceEEEeCCCCCCCHHHHH----HHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 67 EVRTLFVAGLPEDVKPREIY----NLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
+.++|||+|||.++++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|++|+..|| .|+.|+|+|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45999999999999999999 9999999999998874 56778999999999999999999998 999999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
++...
T Consensus 86 a~~~~ 90 (97)
T 1nu4_A 86 AKTDS 90 (97)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 98654
No 280
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-16 Score=114.79 Aligned_cols=72 Identities=31% Similarity=0.409 Sum_probs=66.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcC--CCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREF--PGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
...++|||+|||.++++++|+++|++| |.|..|++. +|||||+|.+.++|++|+..|| .|+.|+|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 345999999999999999999999999 889988875 6899999999999999999999 9999999999
Q ss_pred ccCC
Q 020954 140 KSNS 143 (319)
Q Consensus 140 ~~~~ 143 (319)
+...
T Consensus 87 ~~~~ 90 (99)
T 2cpd_A 87 KPVD 90 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 281
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.1e-17 Score=119.88 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=67.0
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
..++|||+|||+++|+++|+++|+.| .|.+|+|+.+. .+|||||+|.+.++|.+|| .|||..|+ ||.|+|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~----gr~i~V~ 88 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI----QRYVEVS 88 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET----TEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEEE
Confidence 36799999999999999999999999 89999998643 4679999999999999999 69999999 5579998
Q ss_pred ecCC
Q 020954 307 FAKS 310 (319)
Q Consensus 307 ~ak~ 310 (319)
.++.
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 8764
No 282
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=6.3e-17 Score=122.38 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=69.3
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCC---ceEEEEeecCC---CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCe
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPG---FLKLKIQSTYG---PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDG 302 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~---i~~v~i~~~~~---~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~ 302 (319)
...++|||+|||+++|+++|+++|+.||. |..|+|+.+.. +|||||+|.+.++|.+||+ |||..|+ ||.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~----gr~ 89 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG----HRY 89 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET----TEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC----CeE
Confidence 34779999999999999999999999998 89999987433 4599999999999999999 9999999 557
Q ss_pred EEEEecCCC
Q 020954 303 IRLEFAKSR 311 (319)
Q Consensus 303 i~V~~ak~~ 311 (319)
|+|.+++.+
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998654
No 283
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=1.4e-16 Score=117.53 Aligned_cols=73 Identities=27% Similarity=0.441 Sum_probs=66.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
...++|||+|||.++++++|+++|++||.|..|.|. ++||||+|.+.++|++|++.|+ .|+.|+|.|++.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 345999999999999999999999999999999987 5699999999999999999998 999999999986
Q ss_pred CCc
Q 020954 142 NSR 144 (319)
Q Consensus 142 ~~~ 144 (319)
...
T Consensus 83 ~~~ 85 (103)
T 2dgu_A 83 PDQ 85 (103)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 284
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.6e-17 Score=120.57 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=69.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCC-ccEEEEe-cC--CCCCccEEEEEEcCHHHHHHHHHHcC------CCcEEEE
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLR-SS--TQNSQPFAFAVFSDQQSALGAMYALN------KGSTLYI 136 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~-~~--~~~~~g~afV~f~~~~~A~~A~~~l~------~g~~l~v 136 (319)
+.++|||+|||.++++++|+++|+.||. |.+|.+. .+ ++.++|||||+|.+.++|++|+..|+ .|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4599999999999999999999999998 9999987 55 66899999999999999999999873 8999999
Q ss_pred EEcccCC
Q 020954 137 DLAKSNS 143 (319)
Q Consensus 137 ~~a~~~~ 143 (319)
+|++...
T Consensus 87 ~~a~~~~ 93 (109)
T 2dis_A 87 DWAEPEI 93 (109)
T ss_dssp EESCSSC
T ss_pred EEcCCCC
Confidence 9998643
No 285
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=1.6e-16 Score=125.23 Aligned_cols=77 Identities=26% Similarity=0.211 Sum_probs=68.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CC--cEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KG--STLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g--~~l~v~~a 139 (319)
....+|||+||++++|+++|+++|++||.|++|.|..+ .++|||||+|.+.++|++|++.|| .| +.|+|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 34578999999999999999999999999999998643 357899999999999999999999 33 99999999
Q ss_pred ccCCc
Q 020954 140 KSNSR 144 (319)
Q Consensus 140 ~~~~~ 144 (319)
+....
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 87643
No 286
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.4e-17 Score=115.45 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=67.2
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
.+++|||+|||.++|+++|+++|++||.|.+|++..+ .++||||+|.+.++|++ +++..+... |+.|+|.|++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~~~--g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLIIK--GISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEEET--TEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCceeC--CEEEEEEecC
Confidence 4689999999999999999999999999999999874 67899999999999974 566655433 6789999998
Q ss_pred CCCCCC
Q 020954 310 SRMGMP 315 (319)
Q Consensus 310 ~~~~~~ 315 (319)
.+....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 875543
No 287
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=3.2e-17 Score=121.88 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=69.3
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCC---ceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCe
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPG---FLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDG 302 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~---i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~ 302 (319)
...++|||+|||+++|+++|+++|+.||. |.+|+|..+. .+|||||+|.+.++|.+||+ |||..|+ ||.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG----QRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS----SSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC----CeE
Confidence 35779999999999999999999999988 8999998643 46699999999999999999 9999999 556
Q ss_pred EEEEecCCC
Q 020954 303 IRLEFAKSR 311 (319)
Q Consensus 303 i~V~~ak~~ 311 (319)
|+|.+++.+
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999998754
No 288
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-17 Score=124.71 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=66.8
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEee----cCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQS----TYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~----~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
...++|||+|||.++|+++|+++|+.||.|..+.++. ...+|||||+|.+.++|.+||+ |||..|+ |+.|+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~----gr~i~ 97 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG----NRFIQ 97 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST----TSCBE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC----CcEEE
Confidence 3468999999999999999999999999998744433 2235699999999999999999 9999999 55799
Q ss_pred EEecCCC
Q 020954 305 LEFAKSR 311 (319)
Q Consensus 305 V~~ak~~ 311 (319)
|.+++.+
T Consensus 98 V~~a~~~ 104 (124)
T 1wel_A 98 VHPITKK 104 (124)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998764
No 289
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=7.7e-17 Score=117.33 Aligned_cols=73 Identities=23% Similarity=0.476 Sum_probs=66.6
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 66 DEVRTLFVAGLPE-DVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 66 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
.+.++|||+|||. ++++++|+++|++||.|.+|.|. +|||||+|.+.++|++|+..|+ .|+.|+|++++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 3459999999998 99999999999999999999995 7999999999999999999998 89999999998
Q ss_pred cCCc
Q 020954 141 SNSR 144 (319)
Q Consensus 141 ~~~~ 144 (319)
.+..
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 290
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=5.2e-16 Score=125.69 Aligned_cols=79 Identities=25% Similarity=0.288 Sum_probs=72.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
.....++|||+||+.++++++|+++|+.||.|.+|.|..+ ++.++|||||+|.+.++|++|++.|| .|+.|+|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3445699999999999999999999999999999999887 78899999999999999999999999 899999999
Q ss_pred cccC
Q 020954 139 AKSN 142 (319)
Q Consensus 139 a~~~ 142 (319)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8753
No 291
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=2.7e-16 Score=144.82 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=73.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEE
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYID 137 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~ 137 (319)
.....++|||+||+.++|+++|+++|+.||.|..|.|+.+ +++++|||||+|.+.++|.+||..|| .|+.|.|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3455689999999999999999999999999999999887 78899999999999999999999999 99999999
Q ss_pred EcccC
Q 020954 138 LAKSN 142 (319)
Q Consensus 138 ~a~~~ 142 (319)
|++..
T Consensus 178 ~a~~~ 182 (437)
T 3pgw_S 178 VERGR 182 (437)
T ss_pred EeCCC
Confidence 99754
No 292
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=116.51 Aligned_cols=76 Identities=28% Similarity=0.425 Sum_probs=66.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
..+.++|||+|||.++++++|+++|+.|+ .|.++.+ +++++|||||+|.+.++|++||+.|| .|+.|+|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34559999999999999999999999875 4555554 78889999999999999999999998 999999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
++.+.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98654
No 293
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=114.41 Aligned_cols=71 Identities=20% Similarity=0.363 Sum_probs=65.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
...++|||+|||.++++++|+++|++||.|.+|++. ++||||+|.+.++|++|++.|| .|+.|+|++++.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 345999999999999999999999999999999997 4599999999999999999998 999999999976
Q ss_pred C
Q 020954 142 N 142 (319)
Q Consensus 142 ~ 142 (319)
.
T Consensus 81 ~ 81 (90)
T 2dnp_A 81 G 81 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 294
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=112.83 Aligned_cols=69 Identities=23% Similarity=0.231 Sum_probs=61.8
Q ss_pred ce-EEEeCCCCCCCHHH----HHHHhhcCC-CccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 69 RT-LFVAGLPEDVKPRE----IYNLFREFP-GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 69 ~~-l~V~nLp~~~t~~~----L~~~F~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
.| |||+|||+++++++ |+++|++|| .|.+| ++ |+|||+|.+.++|++|++.|+ .|+.|+|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 66 99999999999998 568999995 99887 23 999999999999999999999 999999999
Q ss_pred cccCCcc
Q 020954 139 AKSNSRS 145 (319)
Q Consensus 139 a~~~~~~ 145 (319)
|+.+++.
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9987653
No 295
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=7e-17 Score=136.31 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=69.6
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCC--CceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCP--GFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG--~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
..++|||+||+.++|+++|+++|++|| .|++|+|+.+. +++||||+|.+.++|.+||+.|||+.|. |+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~----Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT----TBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC----CEEe
Confidence 467899999999999999999999999 99999998754 3459999999999999999999999999 5579
Q ss_pred EEEecCCC
Q 020954 304 RLEFAKSR 311 (319)
Q Consensus 304 ~V~~ak~~ 311 (319)
+|.|++..
T Consensus 143 ~V~~a~~~ 150 (229)
T 3q2s_C 143 VVTPVNKQ 150 (229)
T ss_dssp EEEECCHH
T ss_pred EEEECCCC
Confidence 99998754
No 296
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=7.3e-17 Score=124.59 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=69.0
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCC---ceEEEEeecCC---CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPG---FLKLKIQSTYG---PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~---i~~v~i~~~~~---~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
..++|||+|||+++|+++|+++|++||. |.+|+|+.+.. +|||||+|.+.++|.+||+ |||..|+ ||.|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~----gr~i 117 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG----HRYI 117 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS----SSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC----CEEE
Confidence 4779999999999999999999999999 88999987533 4599999999999999999 9999999 5579
Q ss_pred EEEecCCC
Q 020954 304 RLEFAKSR 311 (319)
Q Consensus 304 ~V~~ak~~ 311 (319)
+|.+++.+
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998653
No 297
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.5e-17 Score=118.62 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=65.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
..++|||+|||+++|+++|+++|+.||.| +|+|..+ +++++|||||+|.+.++|++||+ +| .|+.|+|.++..
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCC
Confidence 34899999999999999999999999954 8988877 88999999999999999999995 57 899999988764
No 298
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.6e-17 Score=114.09 Aligned_cols=71 Identities=13% Similarity=0.240 Sum_probs=63.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
+|||+|||.++|+++|+++|++||.|.+|++..+ ..++||||+|.+.++|.+|++ ++|..+. |+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~----g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVG----LSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBT----TBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeEC----CEEEEEEEC
Confidence 5999999999999999999999999999999764 346799999999999999999 5999999 556999875
No 299
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=7.3e-17 Score=135.71 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=69.6
Q ss_pred CCcCEEEEcCCCCCC---------CHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcc-----
Q 020954 229 TPCATLFVANLGPTC---------TEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTIL----- 294 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~---------t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i----- 294 (319)
..+++|||+||+.++ ++++|+++|++||.|++|+|+. +++||||+|.+.++|+.|+++|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 458899999999998 7999999999999999999996 467999999999999999999999999
Q ss_pred -------cCCCCCCeEEEEecCCCCCC
Q 020954 295 -------YSSPTSDGIRLEFAKSRMGM 314 (319)
Q Consensus 295 -------~~~~~G~~i~V~~ak~~~~~ 314 (319)
. |+.|+|.||+.....
T Consensus 210 ~e~~~~~~----gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRRE----GTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGG----SCCCEEEECC-----
T ss_pred ccccccCC----CCEEEEEEccCCCCH
Confidence 4 667999999976543
No 300
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.3e-16 Score=128.06 Aligned_cols=78 Identities=28% Similarity=0.385 Sum_probs=71.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+.++|||+|||.++++++|+++|+.||.|..|.|..+ ++.++|||||+|.+.++|++||..|| .|+.|.|.|++
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 3489999999999999999999999999999999887 78899999999999999999999999 99999999997
Q ss_pred cCCc
Q 020954 141 SNSR 144 (319)
Q Consensus 141 ~~~~ 144 (319)
.+..
T Consensus 151 ~~~~ 154 (165)
T 1rk8_A 151 VKGP 154 (165)
T ss_dssp ECC-
T ss_pred CCCC
Confidence 6543
No 301
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=6.9e-17 Score=117.57 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=67.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..+.++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|++|+..|+ .|+.|+|++++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 3456999999999999999999999999988766 4478899999999999999999999999 99999999997
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
..
T Consensus 90 ~~ 91 (96)
T 1fjc_A 90 EK 91 (96)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 302
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.3e-17 Score=114.38 Aligned_cols=70 Identities=27% Similarity=0.354 Sum_probs=64.3
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEc
Q 020954 70 TLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (319)
Q Consensus 70 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (319)
||||+|||.++++++|+++|++||.|.++.+..+ ++.++|||||+|.+.++|++|++..+ .|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 6999999999999999999999999999999876 68899999999999999999998644 8999988775
No 303
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=120.31 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=67.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCc----cEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGY----ESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v----~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
+.++|||+|||.++|+++|+++|+.||.| ..+++. +++++|||||+|.+.++|++|++.|+ .|+.|+|+|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45999999999999999999999999998 444444 78899999999999999999999999 999999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
++...
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98643
No 304
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.1e-16 Score=113.15 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=66.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..+.++|||+|| ++++++|+++|++||.|..|.|. +++|||||+|.+.++|++|+..|+ .|+.|+|+|++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 334599999997 89999999999999999999984 578999999999999999999999 99999999997
Q ss_pred cCC
Q 020954 141 SNS 143 (319)
Q Consensus 141 ~~~ 143 (319)
...
T Consensus 86 ~~~ 88 (97)
T 1x5p_A 86 KQP 88 (97)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 305
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=119.18 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=67.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
..++|||+|||.++++++|+++|++||.|..|.|.. ++|||||+|.+.++|++|+..|| .|+.|+|+|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 458999999999999999999999999999998863 67899999999999999999999 8999999999865
Q ss_pred Cc
Q 020954 143 SR 144 (319)
Q Consensus 143 ~~ 144 (319)
..
T Consensus 85 ~~ 86 (111)
T 1whx_A 85 VF 86 (111)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 306
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=3.5e-17 Score=120.34 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=66.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..++|||+|||.++++++|+++|+.||.|.. .++.+ +++++|||||+|.+.++|++|++ || .|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4589999999999999999999999999877 44443 78899999999999999999998 88 99999999997
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
.+
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 307
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.68 E-value=8.9e-17 Score=114.71 Aligned_cols=71 Identities=21% Similarity=0.399 Sum_probs=65.1
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcC----C-------CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCC
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKC----P-------GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSP 298 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~f----G-------~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~ 298 (319)
+.++|||+|||.++|+++|+++|++| | .|.++++..+ ++||||+|.+.++|.+|+ .|||..|.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~--- 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQ--- 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEET---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEEC---
Confidence 47899999999999999999999999 8 8999998864 679999999999999999 99999999
Q ss_pred CCCeEEEEe
Q 020954 299 TSDGIRLEF 307 (319)
Q Consensus 299 ~G~~i~V~~ 307 (319)
|+.|+|+.
T Consensus 79 -g~~l~V~r 86 (87)
T 2hzc_A 79 -GQSLKIRR 86 (87)
T ss_dssp -TEECEEEC
T ss_pred -CeEEEEeC
Confidence 55799873
No 308
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=6.7e-17 Score=120.10 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=69.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCC---ccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEE
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPG---YESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v 136 (319)
..+..+|||+|||+++|+++|+++|+.||. |..|+|..+ .|+++|||||+|.+.++|++||. ++ .|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 445699999999999999999999999988 899999887 68899999999999999999998 77 8899999
Q ss_pred EEccc
Q 020954 137 DLAKS 141 (319)
Q Consensus 137 ~~a~~ 141 (319)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 98864
No 309
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=2.7e-16 Score=119.53 Aligned_cols=75 Identities=25% Similarity=0.247 Sum_probs=66.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccE-EEEEEcCHHHHHHHHHHcC----CC--cEEEEEEc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPF-AFAVFSDQQSALGAMYALN----KG--STLYIDLA 139 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~-afV~f~~~~~A~~A~~~l~----~g--~~l~v~~a 139 (319)
..-.|||+||++.+|+++|+++|++||.|.+|.|..+ .+|| |||+|.+.++|++|++.|| .| +.|+|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 3477889999999999999999999999999988753 3677 9999999999999999999 45 89999999
Q ss_pred ccCCc
Q 020954 140 KSNSR 144 (319)
Q Consensus 140 ~~~~~ 144 (319)
+....
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87654
No 310
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.6e-16 Score=116.05 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=69.6
Q ss_pred CCcCEEEEcCCCCCCC-----------HHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 229 TPCATLFVANLGPTCT-----------EQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t-----------~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
.++++|+|+||-...+ +++|+++|++||.|.+|.|.....+|||||+|.+.++|.+|++.|||..|.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG-- 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET--
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence 3588999999954332 689999999999999997755456789999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCC
Q 020954 298 PTSDGIRLEFAKSRMG 313 (319)
Q Consensus 298 ~~G~~i~V~~ak~~~~ 313 (319)
||.|+|.|++.+..
T Consensus 91 --gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 --GRQITAQAWDGTTD 104 (112)
T ss_dssp --TEECEEEECCSCCC
T ss_pred --CcEEEEEEeCCCCC
Confidence 66899999987644
No 311
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=2.3e-16 Score=116.40 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=67.6
Q ss_pred CcCEEEEcCCCC-----CCCHHHHHHHhhcCCCceEEEEeec-----CCCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 230 PCATLFVANLGP-----TCTEQELTQVFSKCPGFLKLKIQST-----YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 230 ~~~~l~V~nLp~-----~~t~~~L~~~F~~fG~i~~v~i~~~-----~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
++++|+|+||-. +-++++|+++|++||.|.+|+|..+ ..+|||||+|.+.++|.+|++.|||+.+.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~---- 82 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG---- 82 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET----
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC----
Confidence 578999999973 2478999999999999999999874 34679999999999999999999999999
Q ss_pred CCeEEEEecCC
Q 020954 300 SDGIRLEFAKS 310 (319)
Q Consensus 300 G~~i~V~~ak~ 310 (319)
||.|+|+|+..
T Consensus 83 Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 GRVVKACFYNL 93 (105)
T ss_dssp TEECEEEECCH
T ss_pred CcEEEEEEcCH
Confidence 66899999975
No 312
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=3.9e-16 Score=116.56 Aligned_cols=70 Identities=23% Similarity=0.406 Sum_probs=65.3
Q ss_pred CcceEEEeCCCCC-CCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 67 EVRTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 67 ~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
..++|||+|||.+ +++++|+++|++||.|.+|.| ++|||||+|.+.++|++|++.|+ .|+.|+|+|++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3489999999999 999999999999999999999 48999999999999999999998 999999999975
Q ss_pred C
Q 020954 142 N 142 (319)
Q Consensus 142 ~ 142 (319)
.
T Consensus 100 ~ 100 (110)
T 1wf1_A 100 P 100 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 313
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=8.9e-17 Score=135.69 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=70.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCC--CccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEE
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFP--GYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDL 138 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~ 138 (319)
..++|||+||++++|+++|+++|+.|| .|.+|+|+.+ +++++|||||+|.+.++|++||+.|| .|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 9999999887 88999999999999999999999998 999999999
Q ss_pred cccCC
Q 020954 139 AKSNS 143 (319)
Q Consensus 139 a~~~~ 143 (319)
++...
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87543
No 314
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=4.5e-17 Score=126.18 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=69.0
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
..++|||+|||+++|+++|+++|++|| |++|+|+.+. .++||||+|++.++|.+|| .+|+..|+ ||.|+|.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~----gR~i~V~ 118 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ----HRYIELF 118 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS----SCCCCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC----CEEEEEE
Confidence 467899999999999999999999999 7799988643 4669999999999999999 79999999 4569999
Q ss_pred ecCCCCCC
Q 020954 307 FAKSRMGM 314 (319)
Q Consensus 307 ~ak~~~~~ 314 (319)
++..+...
T Consensus 119 ~a~~~~~~ 126 (139)
T 2hgn_A 119 LNSTTGAS 126 (139)
T ss_dssp ECCCSCC-
T ss_pred ECCCCCCC
Confidence 98876543
No 315
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=118.43 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=65.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--C---CCCccEEEEEEcCHHHHHHHHHHcC--CCcEEEEEE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--T---QNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDL 138 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~---~~~~g~afV~f~~~~~A~~A~~~l~--~g~~l~v~~ 138 (319)
...++|||+|||.++++++|+++|++||.|. +.++.+ + |+++|||||+|.+.++|++||+.++ .|+.|.+..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 4459999999999999999999999999999 777665 3 7899999999999999999999997 888888865
Q ss_pred cc
Q 020954 139 AK 140 (319)
Q Consensus 139 a~ 140 (319)
+.
T Consensus 85 ~~ 86 (114)
T 2dnl_A 85 SP 86 (114)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 316
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.66 E-value=2.7e-16 Score=124.22 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=68.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
...++|||+|||.++++++|+++|+.||.|.+|+|..+ ++|||||+|.+.++|.+|+..|| .|+.|+|+|++.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 34599999999999999999999999999999999865 68999999999999999999998 999999999976
Q ss_pred C
Q 020954 142 N 142 (319)
Q Consensus 142 ~ 142 (319)
+
T Consensus 148 ~ 148 (150)
T 2i2y_A 148 E 148 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 317
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1e-16 Score=122.37 Aligned_cols=75 Identities=12% Similarity=0.231 Sum_probs=66.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEE-EEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESS-HLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
+.++|||+|||+++|+++|+++|+.||.|..+ .+..+ +++++|||||+|.+.++|++||. +| .|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 44899999999999999999999999999763 34333 88899999999999999999999 88 99999999986
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
.+
T Consensus 103 ~~ 104 (124)
T 1wel_A 103 KK 104 (124)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 318
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.65 E-value=4e-16 Score=130.58 Aligned_cols=78 Identities=24% Similarity=0.445 Sum_probs=70.5
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
+.++|||+|||.++|+++|+++|++||.|++|+|+.+. +++||||+|.+.++|.+||+.|||..+. |+.|++
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~----g~~i~~ 89 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK----GKPVRI 89 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC----Cccccc
Confidence 57899999999999999999999999999999998754 3459999999999999999999999999 557999
Q ss_pred EecCCC
Q 020954 306 EFAKSR 311 (319)
Q Consensus 306 ~~ak~~ 311 (319)
.++...
T Consensus 90 ~~~~~~ 95 (213)
T 4f02_A 90 MWSQRD 95 (213)
T ss_dssp EECCCC
T ss_pred cccccc
Confidence 998764
No 319
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=4.4e-16 Score=131.78 Aligned_cols=78 Identities=27% Similarity=0.358 Sum_probs=72.3
Q ss_pred CCcCEEEEcCCCC-CCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 229 TPCATLFVANLGP-TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 229 ~~~~~l~V~nLp~-~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
+++++|||+|||. ++|+++|+++|++||.|.+|++..+. ++||||+|.+.++|.+|++.|||..|. |+.|+|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLH----GKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCS----SSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEE
Confidence 4578999999999 99999999999999999999999854 789999999999999999999999998 55799999
Q ss_pred cCCC
Q 020954 308 AKSR 311 (319)
Q Consensus 308 ak~~ 311 (319)
++.+
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9865
No 320
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=113.47 Aligned_cols=75 Identities=21% Similarity=0.287 Sum_probs=64.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC--CCcEEEEEEcccCC
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDLAKSNS 143 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~g~~l~v~~a~~~~ 143 (319)
.+.++|||+|||.++++++|+++|++||.|.+|+|..+ ++|||||+|.+.++|++|+.... .|+.|+|.+++.+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCCC
Confidence 34599999999999999999999999999999999854 78999999999999987644322 88999999887543
No 321
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=2.7e-16 Score=112.65 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=60.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC--CCcEEEEEEcccC
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDLAKSN 142 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~g~~l~v~~a~~~ 142 (319)
..+|||+|||+++|+++|+++|++||.|.+|+|..+ ++|||||+|.+.++|+++..... .|+.|.|.+++.+
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC--
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCCC
Confidence 389999999999999999999999999999999863 79999999999999985332111 6899999998753
No 322
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=8.5e-18 Score=126.90 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=71.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccE--------EEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----C
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYES--------SHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----K 130 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~ 130 (319)
..+.++|||+|||.++++++|+++|++||.|.. |.|..+ +++++|||||+|.+.++|++|+..|| .
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345699999999999999999999999999988 888776 68899999999999999999999988 9
Q ss_pred CcEEEEEEcccCC
Q 020954 131 GSTLYIDLAKSNS 143 (319)
Q Consensus 131 g~~l~v~~a~~~~ 143 (319)
|+.|+|++++.+.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999998654
No 323
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=3.7e-16 Score=111.77 Aligned_cols=72 Identities=18% Similarity=0.404 Sum_probs=66.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
..++|||+|||.++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|| .|+.|+|+|+...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 45899999999999999999999999 99999884 678999999999999999999999 9999999998754
Q ss_pred C
Q 020954 143 S 143 (319)
Q Consensus 143 ~ 143 (319)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 324
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=113.02 Aligned_cols=71 Identities=23% Similarity=0.378 Sum_probs=64.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCC-ccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC-----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPG-YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~-----~g~~l~v~~a~ 140 (319)
..++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.|| .|+.|+|+|++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 4599999999999999999999999999 6766664 48999999999999999999887 89999999997
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
.+
T Consensus 82 ~~ 83 (93)
T 2cqh_A 82 SK 83 (93)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 325
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.3e-16 Score=117.39 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=69.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEcc
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAK 140 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a~ 140 (319)
....++|||+|||.++++++|+++|+.||.|.+|+|..+ +++++|||||+|.+.++|++|+. -. .|+.|.|.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 344599999999999999999999999999999999887 78899999999999999999998 22 79999999987
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
.+
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 326
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1.9e-16 Score=120.38 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=66.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCcc--EEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYE--SSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a 139 (319)
...++|||+|||+++|+++|+++|+.| .|. +|+|..+ .|+++|||||+|.+.++|++||+..+ .|+.|+|..+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 345899999999999999999999999 576 8998877 78899999999999999999998655 8999999877
Q ss_pred cc
Q 020954 140 KS 141 (319)
Q Consensus 140 ~~ 141 (319)
..
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 327
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=2.8e-15 Score=130.81 Aligned_cols=74 Identities=28% Similarity=0.462 Sum_probs=67.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----C-CcEEEEEE
Q 020954 64 SYDEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----K-GSTLYIDL 138 (319)
Q Consensus 64 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~-g~~l~v~~ 138 (319)
....+++|||+||+.++++++|+++|+.||.|.+|+|..+. +|||||+|.+.++|.+|++.|| . |+.|+|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 34456999999999999999999999999999999998533 5899999999999999999999 5 99999999
Q ss_pred cc
Q 020954 139 AK 140 (319)
Q Consensus 139 a~ 140 (319)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 87
No 328
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=123.91 Aligned_cols=76 Identities=18% Similarity=0.354 Sum_probs=67.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEE--------EEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESS--------HLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGST 133 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v--------~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~ 133 (319)
.+.++|||+|||.++|+++|+++|+.||.|..+ .+. .+++++|||||+|.+.++|.+|+..|| .|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345899999999999999999999999998764 222 378899999999999999999999999 9999
Q ss_pred EEEEEcccC
Q 020954 134 LYIDLAKSN 142 (319)
Q Consensus 134 l~v~~a~~~ 142 (319)
|+|+|++..
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999764
No 329
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=7e-16 Score=123.80 Aligned_cols=80 Identities=24% Similarity=0.351 Sum_probs=72.3
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
++++|||+|||.++|+++|+++|+.||.|.+|++..+. .++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~----g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR----NKRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC----CcEEEE
Confidence 36799999999999999999999999999999998754 3469999999999999999999999998 567999
Q ss_pred EecCCCCC
Q 020954 306 EFAKSRMG 313 (319)
Q Consensus 306 ~~ak~~~~ 313 (319)
.|++....
T Consensus 78 ~~~~~~~~ 85 (168)
T 1b7f_A 78 SYARPGGE 85 (168)
T ss_dssp EECCCCSS
T ss_pred EecCCCcc
Confidence 99987654
No 330
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=7.2e-16 Score=123.46 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=71.3
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
+++|||+|||.++|+++|+++|+.||.|.+|++..+. .++||||+|.+.++|.+|++.|||..+. |+.|+|.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~----g~~l~v~ 77 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ----TKTIKVS 77 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC----CceEEEE
Confidence 5799999999999999999999999999999998754 2359999999999999999999999999 5579999
Q ss_pred ecCCCCC
Q 020954 307 FAKSRMG 313 (319)
Q Consensus 307 ~ak~~~~ 313 (319)
|++....
T Consensus 78 ~~~~~~~ 84 (167)
T 1fxl_A 78 YARPSSA 84 (167)
T ss_dssp ECCCCCG
T ss_pred ecCCCcc
Confidence 9986543
No 331
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=1.9e-16 Score=116.52 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=69.0
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
..++|||+|||.++|+++|+++|++||.|.+|++..+. .++||||+|.+.++|.+|++ ||..+. |+.|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~----g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH----GKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET----TEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC----CEEEEEE
Confidence 47899999999999999999999999999999998854 34599999999999999999 999999 5579999
Q ss_pred ecCCCCC
Q 020954 307 FAKSRMG 313 (319)
Q Consensus 307 ~ak~~~~ 313 (319)
++..+..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9876543
No 332
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=120.08 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=66.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCc----cEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGY----ESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYID 137 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v----~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~ 137 (319)
.+..+|||+|||+++|+++|+++|+.||.| ..|.|..+ +|+++|||||+|.+.++|++||+... .|+.|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345899999999999999999999999975 68888876 88999999999999999999998622 88999998
Q ss_pred Eccc
Q 020954 138 LAKS 141 (319)
Q Consensus 138 ~a~~ 141 (319)
.+..
T Consensus 101 ~a~~ 104 (123)
T 2dha_A 101 RSTA 104 (123)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7753
No 333
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.7e-15 Score=114.62 Aligned_cols=72 Identities=18% Similarity=0.125 Sum_probs=63.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccE-EEEEEcCHHHHHHHHHHcC----CC--cEEEEEEccc
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPF-AFAVFSDQQSALGAMYALN----KG--STLYIDLAKS 141 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~-afV~f~~~~~A~~A~~~l~----~g--~~l~v~~a~~ 141 (319)
-.|||+||++.+++++|+++|++||.|.+|+|... .|| |||+|.+.++|.+|++.|| .| +.|+|+||+.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 45789999999999999999999999999998642 386 9999999999999999999 44 6999999987
Q ss_pred CCc
Q 020954 142 NSR 144 (319)
Q Consensus 142 ~~~ 144 (319)
...
T Consensus 102 ~~l 104 (124)
T 2e5i_A 102 TRL 104 (124)
T ss_dssp SCC
T ss_pred Ccc
Confidence 654
No 334
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.7e-16 Score=116.04 Aligned_cols=72 Identities=19% Similarity=0.388 Sum_probs=63.6
Q ss_pred CCcceEEE--eCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC---------CCcEE
Q 020954 66 DEVRTLFV--AGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---------KGSTL 134 (319)
Q Consensus 66 ~~~~~l~V--~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~---------~g~~l 134 (319)
.++++||| |||+.++++++|+++|++||.|.+|.|.. ++|||||+|.+.++|++|++.|| .|+.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 44589999 77999999999999999999999988863 47999999999999999999999 15678
Q ss_pred EEEEccc
Q 020954 135 YIDLAKS 141 (319)
Q Consensus 135 ~v~~a~~ 141 (319)
+|.|++.
T Consensus 99 ~v~~a~~ 105 (114)
T 2cq2_A 99 YLNFVEK 105 (114)
T ss_dssp EEEEESC
T ss_pred EEEeccc
Confidence 9999864
No 335
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=5.1e-16 Score=118.00 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=66.0
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCce--EEEEeec---CCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFL--KLKIQST---YGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~--~v~i~~~---~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
..++|||+|||+++|+++|+++|+.| .|+ +|+|+.+ ..+|||||+|.+.++|.+||+ +++..|+ ||.|+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~----gR~I~ 114 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIG----HRYIE 114 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBT----TBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEEC----CEEEE
Confidence 46789999999999999999999999 777 8998864 346799999999999999999 5889999 55799
Q ss_pred EEecCCC
Q 020954 305 LEFAKSR 311 (319)
Q Consensus 305 V~~ak~~ 311 (319)
|.++..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988643
No 336
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.4e-16 Score=123.32 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=66.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
...++|||+|||+++|+++|+++|+.|| |.+|+|..+ .++++|||||+|.+.++|++|| .+| .|+.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3458999999999999999999999999 779999887 7889999999999999999999 667 88999998876
Q ss_pred c
Q 020954 141 S 141 (319)
Q Consensus 141 ~ 141 (319)
.
T Consensus 122 ~ 122 (139)
T 2hgn_A 122 T 122 (139)
T ss_dssp C
T ss_pred C
Confidence 4
No 337
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=6.2e-16 Score=124.90 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=72.9
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC------CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY------GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~------~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
+++|||+|||.++|+++|+++|++||.|.+|+++.+. +++||||+|.+.++|.+|++.|||..+.+.. ++.|.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~-~~~~~ 81 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM-HHPIQ 81 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTC-SSCCE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCC-ccceE
Confidence 6799999999999999999999999999999998753 3469999999999999999999999887655 77899
Q ss_pred EEecCCCCC
Q 020954 305 LEFAKSRMG 313 (319)
Q Consensus 305 V~~ak~~~~ 313 (319)
+.+++....
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 999876543
No 338
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=8.5e-16 Score=126.94 Aligned_cols=76 Identities=28% Similarity=0.372 Sum_probs=70.7
Q ss_pred cCEEEEcCCCC-CCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEecC
Q 020954 231 CATLFVANLGP-TCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFAK 309 (319)
Q Consensus 231 ~~~l~V~nLp~-~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ak 309 (319)
+++|||+|||. ++|+++|+++|++||.|.+|++..+. ++||||+|.+.++|.+|++.|||..+. |+.|+|.|++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLH----GKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCS----SCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeec----CeEEEEEEec
Confidence 67999999999 99999999999999999999999854 689999999999999999999999998 5579999998
Q ss_pred CC
Q 020954 310 SR 311 (319)
Q Consensus 310 ~~ 311 (319)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 339
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=110.28 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=62.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
...++|||+|||.++++++|+++|+.||.|.+|.+...+++ ||||+|.+.++|++|+. |+ .|+.|+|+++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 34589999999999999999999999999998833322443 99999999999999999 88 999999987764
No 340
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=1.5e-15 Score=127.07 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=70.5
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC----CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY----GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~----~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
..++|||+|||.++|+++|+++|+.||.|.+|+++.+. .++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~----g~~l~v 102 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG----GRNIKV 102 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-----CCCEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC----CeeEEE
Confidence 36799999999999999999999999999999998643 5679999999999999999999999999 557999
Q ss_pred EecCCCC
Q 020954 306 EFAKSRM 312 (319)
Q Consensus 306 ~~ak~~~ 312 (319)
.++....
T Consensus 103 ~~~~~~~ 109 (216)
T 2qfj_A 103 GRPSNIG 109 (216)
T ss_dssp ECCSCCG
T ss_pred ecCCCcc
Confidence 9987653
No 341
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=109.81 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=65.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEE-EEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESS-HLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
..++|||+|||.++++++|+++|+.||.|.+| .|..+.. .|.|||+|.+.++|++|+..|| .|+.|+|++++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~--~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE--TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS--SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 45899999999999999999999999999999 4776533 3349999999999999999999 999999999986
Q ss_pred C
Q 020954 142 N 142 (319)
Q Consensus 142 ~ 142 (319)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 342
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=8.3e-16 Score=116.53 Aligned_cols=76 Identities=18% Similarity=0.077 Sum_probs=65.8
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCc----eEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCe
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGF----LKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDG 302 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i----~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~ 302 (319)
..++|||+|||+++|+++|+++|++||.| .+|+|+.+. .+|||||+|.+.++|.+||+. ||..|+ ||.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~----gR~ 96 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG----KRY 96 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS----SCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC----CeE
Confidence 46799999999999999999999999975 688887643 346999999999999999996 999999 557
Q ss_pred EEEEecCC
Q 020954 303 IRLEFAKS 310 (319)
Q Consensus 303 i~V~~ak~ 310 (319)
|+|..+..
T Consensus 97 i~V~~a~~ 104 (123)
T 2dha_A 97 IELFRSTA 104 (123)
T ss_dssp ECCEEECH
T ss_pred EEEEECCH
Confidence 99988754
No 343
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.61 E-value=2.3e-15 Score=114.15 Aligned_cols=71 Identities=24% Similarity=0.362 Sum_probs=65.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcccC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKSN 142 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~~ 142 (319)
..++|||+|| ++++++|+++|+.||.|.+|.|. .++|||||+|.+.++|++|++.|+ .|+.|+|.|++..
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3599999996 79999999999999999999985 578999999999999999999998 9999999999864
Q ss_pred C
Q 020954 143 S 143 (319)
Q Consensus 143 ~ 143 (319)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 344
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=114.70 Aligned_cols=64 Identities=23% Similarity=0.356 Sum_probs=55.8
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeec-------CCCCEEEEEecChHHHHHHHHHh---CCCcc
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQST-------YGPPVAFVDFQDTVSSTAALNNL---QGTIL 294 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~-------~~~~~aFV~F~~~~~A~~Al~~l---nG~~i 294 (319)
..++|||+|||.++|+++|+++|++||.|. +.++.+ ..++||||+|.+.++|++||+.| ||+.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 367899999999999999999999999999 777653 44679999999999999999999 55533
No 345
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=2e-15 Score=124.10 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=70.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC---CCcEEEEEEcccC
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN---KGSTLYIDLAKSN 142 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~---~g~~l~v~~a~~~ 142 (319)
..++|||+|||.++++++|+++|+.||.|.+|+|..+ ++.++|||||+|.+.++|++|+..++ .|+.|+|.+++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 3589999999999999999999999999999999887 78899999999999999999998777 9999999988754
Q ss_pred C
Q 020954 143 S 143 (319)
Q Consensus 143 ~ 143 (319)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 346
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.3e-15 Score=119.47 Aligned_cols=75 Identities=33% Similarity=0.554 Sum_probs=70.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
...++|||+|||.++++++|+++|+.||.|.++.+..+ ++.++|||||+|.+.++|.+|+..|| .|+.|+|.||
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 34589999999999999999999999999999999876 78899999999999999999999999 9999999998
Q ss_pred c
Q 020954 140 K 140 (319)
Q Consensus 140 ~ 140 (319)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 347
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.8e-15 Score=112.92 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=65.4
Q ss_pred ceEEEeCC----CCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcC----HHH----HHHHHH--HcC---
Q 020954 69 RTLFVAGL----PEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSD----QQS----ALGAMY--ALN--- 129 (319)
Q Consensus 69 ~~l~V~nL----p~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~----~~~----A~~A~~--~l~--- 129 (319)
..|||+|| ++.+++++|+++|+.||+|.++.++.| +|.++|||||+|.| .++ |.+|+. .++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999998 99999999999996 333 788888 566
Q ss_pred -CCcEEEEEEcccC
Q 020954 130 -KGSTLYIDLAKSN 142 (319)
Q Consensus 130 -~g~~l~v~~a~~~ 142 (319)
.|+.|+|.+-+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 9999999987653
No 348
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=2.2e-15 Score=111.12 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=66.3
Q ss_pred CcCEEEEcCCC--CCC--------CHHHHHHHhhcCCCceEEEEeecC------CCCEEEEEecChHHHHHHHHHhCCCc
Q 020954 230 PCATLFVANLG--PTC--------TEQELTQVFSKCPGFLKLKIQSTY------GPPVAFVDFQDTVSSTAALNNLQGTI 293 (319)
Q Consensus 230 ~~~~l~V~nLp--~~~--------t~~~L~~~F~~fG~i~~v~i~~~~------~~~~aFV~F~~~~~A~~Al~~lnG~~ 293 (319)
++++|.|.|+= .++ .+++|++.|++||.|.+|+|..+. ++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 58899999983 333 347999999999999999998642 46899999999999999999999999
Q ss_pred ccCCCCCCeEEEEecCC
Q 020954 294 LYSSPTSDGIRLEFAKS 310 (319)
Q Consensus 294 i~~~~~G~~i~V~~ak~ 310 (319)
++ ||.|+|+|...
T Consensus 84 f~----GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FA----NRVVVTKYCDP 96 (105)
T ss_dssp ET----TEECEEEEECH
T ss_pred eC----CCEEEEEEeCH
Confidence 99 66899999764
No 349
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=2.3e-15 Score=113.18 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=61.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcE-----EEEE
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGST-----LYID 137 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~-----l~v~ 137 (319)
...+|||+|||.++++++|+++|++||.|..|.|..+ |||||+|.+.++|++||+.|| .|+. |+|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 3489999999999999999999999999999999864 999999999999999999999 7877 5665
Q ss_pred Eccc
Q 020954 138 LAKS 141 (319)
Q Consensus 138 ~a~~ 141 (319)
.+..
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 5543
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=3e-15 Score=106.70 Aligned_cols=68 Identities=22% Similarity=0.418 Sum_probs=61.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhcC----C-------CccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----
Q 020954 65 YDEVRTLFVAGLPEDVKPREIYNLFREF----P-------GYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---- 129 (319)
Q Consensus 65 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~---- 129 (319)
....++|||+|||.++++++|+++|++| | .|.++.+.. ++|||||+|.+.++|++|+ .||
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~----~kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS----SSSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC----CCcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 3456999999999999999999999999 8 899998864 4899999999999999999 888
Q ss_pred CCcEEEEE
Q 020954 130 KGSTLYID 137 (319)
Q Consensus 130 ~g~~l~v~ 137 (319)
.|+.|+|+
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 89998885
No 351
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.59 E-value=3.4e-15 Score=132.17 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=69.7
Q ss_pred CCCcCEEEEcC--CCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCC--eE
Q 020954 228 VTPCATLFVAN--LGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSD--GI 303 (319)
Q Consensus 228 ~~~~~~l~V~n--Lp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~--~i 303 (319)
..++.+|||+| |+.++|+++|+++|++||+|.+|.+.. +++||||+|.+.++|++|++.|||+.+.+.. |+ .|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~-g~~~~l 91 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDL-GQKITL 91 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTT-SCEEEC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCcccccc-CCceEE
Confidence 35688999999 578999999999999999999998875 6789999999999999999999999995443 55 68
Q ss_pred EEEecCC
Q 020954 304 RLEFAKS 310 (319)
Q Consensus 304 ~V~~ak~ 310 (319)
.|.|..+
T Consensus 92 y~~~~~~ 98 (345)
T 3tht_A 92 YLNFVEK 98 (345)
T ss_dssp EEEECSS
T ss_pred EEEEeec
Confidence 8899864
No 352
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-14 Score=104.45 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=65.6
Q ss_pred cCEEEEcCCC-------CCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE
Q 020954 231 CATLFVANLG-------PTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI 303 (319)
Q Consensus 231 ~~~l~V~nLp-------~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i 303 (319)
.++|.|.-.. .++|+++|+++|++||.|.+|+|+. ..+|||||+|++.++|.+|++.++| +. |++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~----g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LV----DNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CS----SSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CC----CCeE
Confidence 4567776544 4589999999999999999999984 6778999999999999999998666 34 5689
Q ss_pred EEEecCCCCCCCC
Q 020954 304 RLEFAKSRMGMPR 316 (319)
Q Consensus 304 ~V~~ak~~~~~~~ 316 (319)
+|+|++.+..++.
T Consensus 83 ~V~~a~~~~~~~~ 95 (100)
T 2d9o_A 83 KISWLEGQPQDAS 95 (100)
T ss_dssp EEECSSCCCCCCS
T ss_pred EEEEccCCCCCCC
Confidence 9999998765543
No 353
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.4e-15 Score=111.47 Aligned_cols=75 Identities=9% Similarity=0.142 Sum_probs=65.2
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhcCCCceEEEEeecCCC----CEEEEEecC----hHH----HHHHHH--HhCCCc
Q 020954 232 ATLFVANL----GPTCTEQELTQVFSKCPGFLKLKIQSTYGP----PVAFVDFQD----TVS----STAALN--NLQGTI 293 (319)
Q Consensus 232 ~~l~V~nL----p~~~t~~~L~~~F~~fG~i~~v~i~~~~~~----~~aFV~F~~----~~~----A~~Al~--~lnG~~ 293 (319)
+.|||+|| ++.+++++|+++|+.||+|.+|.++.|... |||||+|.| .++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 999999999999999999999999987654 499999996 433 889988 899999
Q ss_pred ccCCCCCCeEEEEecCC
Q 020954 294 LYSSPTSDGIRLEFAKS 310 (319)
Q Consensus 294 i~~~~~G~~i~V~~ak~ 310 (319)
|+ |+.|+|.+.++
T Consensus 83 I~----Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IM----GFKFEVILNKH 95 (136)
T ss_dssp ET----TEEEEEEECCT
T ss_pred ec----CcEEEEEECcc
Confidence 99 66799998765
No 354
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=4.9e-15 Score=118.74 Aligned_cols=75 Identities=21% Similarity=0.374 Sum_probs=69.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEcc
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAK 140 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~ 140 (319)
..++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|.+|++ ++ .|+.|+|.|++
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 3579999999999999999999999999999999887 78999999999999999999997 67 99999999997
Q ss_pred cC
Q 020954 141 SN 142 (319)
Q Consensus 141 ~~ 142 (319)
.+
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 355
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=6.9e-15 Score=121.04 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=69.6
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC----CCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEE
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG----PPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIR 304 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~----~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~ 304 (319)
...++|||+|||.++|+++|+++|+.||.|.+|+++.+.. +|||||+|.+.++|.+||+. +|..+. |+.|+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~----g~~l~ 85 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD----GRVVE 85 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC----CEEee
Confidence 4578999999999999999999999999999999987543 45999999999999999985 999998 56799
Q ss_pred EEecCCCC
Q 020954 305 LEFAKSRM 312 (319)
Q Consensus 305 V~~ak~~~ 312 (319)
|.++..+.
T Consensus 86 v~~~~~~~ 93 (196)
T 1l3k_A 86 PKRAVSRE 93 (196)
T ss_dssp EEECCC--
T ss_pred eecccCcc
Confidence 99998654
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=9.5e-15 Score=120.00 Aligned_cols=81 Identities=10% Similarity=0.150 Sum_probs=68.1
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEe
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEF 307 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~ 307 (319)
.++|||+|||.++|+++|+++|++||.|.+|++..+. .+|||||+|++.++|.+|++.++ ..+. |+.|+|.|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~----Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYK----ETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEET----TEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeEC----CEEEEEEE
Confidence 6799999999999999999999999999999998743 35699999999999999998665 5888 66899999
Q ss_pred cCCCCCCCC
Q 020954 308 AKSRMGMPR 316 (319)
Q Consensus 308 ak~~~~~~~ 316 (319)
++.-..+++
T Consensus 184 ~~~y~~~K~ 192 (193)
T 2voo_A 184 KDDYFAKKN 192 (193)
T ss_dssp TTTC-----
T ss_pred hHHHHHHhc
Confidence 998766553
No 357
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=1.1e-14 Score=125.64 Aligned_cols=76 Identities=28% Similarity=0.409 Sum_probs=70.2
Q ss_pred CCcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEEec
Q 020954 229 TPCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLEFA 308 (319)
Q Consensus 229 ~~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~~a 308 (319)
...++|||+|||.++|+++|+++|+.||.|.+|++.. +++||||+|.+.++|.+|+..|||..|. |+.|+|.|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~----g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILK----SRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEEC----CceeEeeec
Confidence 3578999999999999999999999999999999975 4679999999999999999999999999 567999998
Q ss_pred CC
Q 020954 309 KS 310 (319)
Q Consensus 309 k~ 310 (319)
..
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 358
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.57 E-value=7.5e-15 Score=118.24 Aligned_cols=72 Identities=25% Similarity=0.391 Sum_probs=68.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
.++|||+|||.++++++|+++|++||.|..+.+..+ ++.++|||||+|.+.++|.+|++.|| .|+.|+|+||
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 589999999999999999999999999999999887 78899999999999999999999999 9999999987
No 359
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.55 E-value=2.8e-14 Score=117.60 Aligned_cols=77 Identities=25% Similarity=0.385 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC--CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS--TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
...++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|.+|++.|| .|+.|+|.|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 44599999999999999999999999999999999887 78889999999999999999999999 9999999999
Q ss_pred ccC
Q 020954 140 KSN 142 (319)
Q Consensus 140 ~~~ 142 (319)
+..
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 360
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.55 E-value=1.4e-14 Score=108.16 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=67.0
Q ss_pred CcCEEEEcCCCCCC----------CHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 230 PCATLFVANLGPTC----------TEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 230 ~~~~l~V~nLp~~~----------t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
++++|.|.|+=..- .+++|++.|++||.|.+|.|..+..+|||||+|.+.++|.+|++.|||+.++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~---- 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA---- 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET----
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----
Confidence 47789999985422 2468899999999999999988777899999999999999999999999999
Q ss_pred CCeEEEEecCC
Q 020954 300 SDGIRLEFAKS 310 (319)
Q Consensus 300 G~~i~V~~ak~ 310 (319)
||.|+|+|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 66899999853
No 361
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=2e-14 Score=116.20 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=67.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
...++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|| .|+.|+|.|++.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 346999999999999999999999999988766 5588899999999999999999999999 999999999976
Q ss_pred C
Q 020954 142 N 142 (319)
Q Consensus 142 ~ 142 (319)
+
T Consensus 174 k 174 (175)
T 1fje_B 174 K 174 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.54 E-value=1.5e-14 Score=108.77 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=66.0
Q ss_pred CcCEEEEcCCCC-----CCCHHHHHHHhhcCCCceEEEEeecCC--------CCEEEEEecChHHHHHHHHHhCCCcccC
Q 020954 230 PCATLFVANLGP-----TCTEQELTQVFSKCPGFLKLKIQSTYG--------PPVAFVDFQDTVSSTAALNNLQGTILYS 296 (319)
Q Consensus 230 ~~~~l~V~nLp~-----~~t~~~L~~~F~~fG~i~~v~i~~~~~--------~~~aFV~F~~~~~A~~Al~~lnG~~i~~ 296 (319)
++++|+|+|+-. +-.+++|++.|++||.|.+|+|..+.. +|++||+|.+.++|.+|++.|||+.+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 588999999842 124789999999999999999987432 369999999999999999999999999
Q ss_pred CCCCCeEEEEecCC
Q 020954 297 SPTSDGIRLEFAKS 310 (319)
Q Consensus 297 ~~~G~~i~V~~ak~ 310 (319)
||.|+|+|+..
T Consensus 98 ---GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 ---GRKVVAEVYDQ 108 (118)
T ss_dssp ---TEECEEEEECH
T ss_pred ---CcEEEEEEcCh
Confidence 66899999753
No 363
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.53 E-value=3.6e-14 Score=104.55 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=66.5
Q ss_pred CcceEEEeCCCC-----CCCHHHHHHHhhcCCCccEEEEecC---CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEE
Q 020954 67 EVRTLFVAGLPE-----DVKPREIYNLFREFPGYESSHLRSS---TQNSQPFAFAVFSDQQSALGAMYALN----KGSTL 134 (319)
Q Consensus 67 ~~~~l~V~nLp~-----~~t~~~L~~~F~~~G~v~~v~i~~~---~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l 134 (319)
++++|+|.||-. +-++++|+++|++||.|.+|.|..+ +++++|||||+|.+.++|.+|++.|| .|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 459999999963 2378999999999999999999876 36789999999999999999999999 99999
Q ss_pred EEEEccc
Q 020954 135 YIDLAKS 141 (319)
Q Consensus 135 ~v~~a~~ 141 (319)
+|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999865
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.4e-14 Score=120.33 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=65.1
Q ss_pred CCcceEEEeCCCCCC---------CHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC---C---
Q 020954 66 DEVRTLFVAGLPEDV---------KPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---K--- 130 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~---~--- 130 (319)
..++||||+||+.++ +|++|+++|++||.|++|+|+. ++|||||+|.+.++|+.|++.|+ .
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 456999999999998 7999999999999999999974 58999999999999999999998 3
Q ss_pred ----------CcEEEEEEcccCC
Q 020954 131 ----------GSTLYIDLAKSNS 143 (319)
Q Consensus 131 ----------g~~l~v~~a~~~~ 143 (319)
|+.|.|.||+...
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccCCCCEEEEEEccCCC
Confidence 6789999998644
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=9.4e-15 Score=107.57 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=58.2
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCceEEEEeecC---CCCEEEEEecChHHHHHHHHHhCCCcccCCCCC
Q 020954 236 VANLGPTCTEQELTQVF------------SKCPGFLKLKIQSTY---GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTS 300 (319)
Q Consensus 236 V~nLp~~~t~~~L~~~F------------~~fG~i~~v~i~~~~---~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G 300 (319)
+.||+..+++++|+++| ++||.|.+|+|..+. .+|||||+|.+.++|.+|++.|||+.+. |
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~----G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN----G 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET----T
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC----C
Confidence 45566667777777666 999999999998753 3679999999999999999999999999 6
Q ss_pred CeEEEEec
Q 020954 301 DGIRLEFA 308 (319)
Q Consensus 301 ~~i~V~~a 308 (319)
|.|+|+|+
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 68999986
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.6e-13 Score=100.04 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=64.0
Q ss_pred CcceEEEeCCCCCCC-----------HHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CC
Q 020954 67 EVRTLFVAGLPEDVK-----------PREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KG 131 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t-----------~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g 131 (319)
+.++|+|.||-...+ +++|+++|++||.|.+|.|. + ..++|||||+|.+.++|++|+..|| .|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~-~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-D-RHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-T-TCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-c-CCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 459999999944332 57999999999999999774 3 3479999999999999999999999 99
Q ss_pred cEEEEEEcccCC
Q 020954 132 STLYIDLAKSNS 143 (319)
Q Consensus 132 ~~l~v~~a~~~~ 143 (319)
+.|+|.|+....
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999987643
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5e-13 Score=97.20 Aligned_cols=72 Identities=13% Similarity=0.022 Sum_probs=62.9
Q ss_pred cceEEEeCCC-------CCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC--CCcEEEEEE
Q 020954 68 VRTLFVAGLP-------EDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDL 138 (319)
Q Consensus 68 ~~~l~V~nLp-------~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~g~~l~v~~ 138 (319)
.++|-|.-.. .++++++|+++|++||.|.+|.|. ++++|||||+|.+.++|+.|++.++ .|+.|+|+|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~ 86 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISW 86 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEEC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEE
Confidence 4666666544 468999999999999999999997 5789999999999999999999887 899999999
Q ss_pred cccC
Q 020954 139 AKSN 142 (319)
Q Consensus 139 a~~~ 142 (319)
++..
T Consensus 87 a~~~ 90 (100)
T 2d9o_A 87 LEGQ 90 (100)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 8764
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.43 E-value=2.8e-13 Score=119.88 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=62.3
Q ss_pred CCCcceEEEeC--CCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC-------CCc--E
Q 020954 65 YDEVRTLFVAG--LPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-------KGS--T 133 (319)
Q Consensus 65 ~~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~-------~g~--~ 133 (319)
..++++|||+| |+.++||++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.|| .|+ .
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 34569999999 578999999999999999999887753 58999999999999999999999 355 5
Q ss_pred EEEEEcc
Q 020954 134 LYIDLAK 140 (319)
Q Consensus 134 l~v~~a~ 140 (319)
|++.|+.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7888874
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.40 E-value=1e-12 Score=96.78 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=64.9
Q ss_pred CcceEEEeCC--CCCCC--------HHHHHHHhhcCCCccEEEEecCC----CCCccEEEEEEcCHHHHHHHHHHcC---
Q 020954 67 EVRTLFVAGL--PEDVK--------PREIYNLFREFPGYESSHLRSST----QNSQPFAFAVFSDQQSALGAMYALN--- 129 (319)
Q Consensus 67 ~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~v~~v~i~~~~----~~~~g~afV~f~~~~~A~~A~~~l~--- 129 (319)
+++.|.|.|+ +.++. +++|++.|++||.|.+|.|.++. ++++|||||+|.+.++|.+|++.||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4599999999 33443 36899999999999999998872 3679999999999999999999999
Q ss_pred -CCcEEEEEEccc
Q 020954 130 -KGSTLYIDLAKS 141 (319)
Q Consensus 130 -~g~~l~v~~a~~ 141 (319)
.|+.|+|.|+..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 999999999754
No 370
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=90.83 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=62.0
Q ss_pred CCcCEEEEcCCCC----CCCH----HHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCC
Q 020954 229 TPCATLFVANLGP----TCTE----QELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTS 300 (319)
Q Consensus 229 ~~~~~l~V~nLp~----~~t~----~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G 300 (319)
|+..||+|.-.+. +.-. .+|.+.|++||+|..+++..+. +||+|.+.++|.+||+ |||..+. |
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~----G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELL----N 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEET----T
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeC----C
Confidence 4566888877662 3333 6788999999999999999853 9999999999999999 9999999 5
Q ss_pred CeEEEEecCCC
Q 020954 301 DGIRLEFAKSR 311 (319)
Q Consensus 301 ~~i~V~~ak~~ 311 (319)
|.|+|.+++..
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 57999998864
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=1.7e-13 Score=100.79 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=57.9
Q ss_pred EeCCCCCCCHHHHHHHh------------hcCCCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEE
Q 020954 73 VAGLPEDVKPREIYNLF------------REFPGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (319)
Q Consensus 73 V~nLp~~~t~~~L~~~F------------~~~G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~ 135 (319)
+.||+.++++++|++.| ++||.|.+|.|..+ .++++|||||+|.+.++|++|+..|| .|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667777776666 99999999999887 67889999999999999999999999 999999
Q ss_pred EEEc
Q 020954 136 IDLA 139 (319)
Q Consensus 136 v~~a 139 (319)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=3.8e-12 Score=95.53 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=64.2
Q ss_pred CcceEEEeCCCC--CC---CHHHHHHHhhcCCCccEEEEecC------CCCCccEEEEEEcCHHHHHHHHHHcC----CC
Q 020954 67 EVRTLFVAGLPE--DV---KPREIYNLFREFPGYESSHLRSS------TQNSQPFAFAVFSDQQSALGAMYALN----KG 131 (319)
Q Consensus 67 ~~~~l~V~nLp~--~~---t~~~L~~~F~~~G~v~~v~i~~~------~~~~~g~afV~f~~~~~A~~A~~~l~----~g 131 (319)
++++|+|.|+-. ++ -++||++.|++||.|.+|.|..+ +++++||+||+|.+.++|.+|++.|| .|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 349999999942 22 36789999999999999999876 23567999999999999999999999 99
Q ss_pred cEEEEEEccc
Q 020954 132 STLYIDLAKS 141 (319)
Q Consensus 132 ~~l~v~~a~~ 141 (319)
+.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999854
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.1e-11 Score=92.53 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=64.9
Q ss_pred CCCcCEEEEcCCCCC-CCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecC-hHHHHHHHHHhC--CCcccCCCCCCeE
Q 020954 228 VTPCATLFVANLGPT-CTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQD-TVSSTAALNNLQ--GTILYSSPTSDGI 303 (319)
Q Consensus 228 ~~~~~~l~V~nLp~~-~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~-~~~A~~Al~~ln--G~~i~~~~~G~~i 303 (319)
.+.++.|||+||+.+ +++++|+++|++||.|..|.+..+.. .|||+|.+ .++|..|++.|| |..|.+. .+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~----~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK----EV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS----SE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc----EE
Confidence 346889999999999 99999999999999999999987443 89999999 899999999995 7778754 48
Q ss_pred EEEec
Q 020954 304 RLEFA 308 (319)
Q Consensus 304 ~V~~a 308 (319)
+++..
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77654
No 374
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.2e-11 Score=86.78 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=60.9
Q ss_pred CCcCEEEEcCCCCC-----CCH----HHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCC
Q 020954 229 TPCATLFVANLGPT-----CTE----QELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPT 299 (319)
Q Consensus 229 ~~~~~l~V~nLp~~-----~t~----~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~ 299 (319)
|+..||+|.-++.+ +-. .+|.+.|++||+|..+++..++ +||+|.+.++|.+||+ |||..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~---- 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVK---- 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEET----
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeC----
Confidence 56778999888643 222 5688999999999999999864 9999999999999999 9999999
Q ss_pred CCeEEEEecC
Q 020954 300 SDGIRLEFAK 309 (319)
Q Consensus 300 G~~i~V~~ak 309 (319)
||.|+|.+..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 5579999754
No 375
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=4.9e-11 Score=88.82 Aligned_cols=72 Identities=10% Similarity=0.122 Sum_probs=61.4
Q ss_pred cceEEEeCCCCCCC----------HHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcE
Q 020954 68 VRTLFVAGLPEDVK----------PREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGST 133 (319)
Q Consensus 68 ~~~l~V~nLp~~~t----------~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~ 133 (319)
++.|.|.|+=..-. ++||++.|++||.|.+|.|.+++ .+|||||+|.+.++|.+|++.|| .|+.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 48899999943222 23689999999999999997654 58999999999999999999999 9999
Q ss_pred EEEEEccc
Q 020954 134 LYIDLAKS 141 (319)
Q Consensus 134 l~v~~a~~ 141 (319)
|+|.|+..
T Consensus 85 i~v~~~~~ 92 (114)
T 3s6e_A 85 ITAAYVPL 92 (114)
T ss_dssp CEEEEECH
T ss_pred EEEEEEcH
Confidence 99999854
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.6e-09 Score=75.75 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=57.4
Q ss_pred ceEEEeCCCC----CCCH----HHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEE
Q 020954 69 RTLFVAGLPE----DVKP----REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (319)
Q Consensus 69 ~~l~V~nLp~----~~t~----~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v 136 (319)
.||+|.-++. +.-. .+|.+.|++||.|..+++..+. +||+|.+.++|.+|++ || +|+.|+|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 8999988762 3333 5689999999999999998643 8999999999999998 88 9999999
Q ss_pred EEcccCC
Q 020954 137 DLAKSNS 143 (319)
Q Consensus 137 ~~a~~~~ 143 (319)
++++.+.
T Consensus 81 ~lkt~dW 87 (91)
T 2dnr_A 81 ALKSPSG 87 (91)
T ss_dssp EECCCSS
T ss_pred EeCCCCc
Confidence 9987543
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2.3e-09 Score=79.94 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=58.9
Q ss_pred ceEEEeCCCCC-CCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcC-HHHHHHHHHHcC------CCcEEEEEEc
Q 020954 69 RTLFVAGLPED-VKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSD-QQSALGAMYALN------KGSTLYIDLA 139 (319)
Q Consensus 69 ~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~-~~~A~~A~~~l~------~g~~l~v~~a 139 (319)
..|||+||+.+ +++++|+++|+.||.|..|.+..+. -.|||.|.+ ..+|..|+..++ .|..++++..
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 89999999999 9999999999999999999997642 249999999 899999999997 5677777654
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.94 E-value=1.5e-09 Score=90.97 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=62.0
Q ss_pred cCEEEEcCCC-----CCCCHHHHHHHhhcCCCceEEEEeec--------CCCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 231 CATLFVANLG-----PTCTEQELTQVFSKCPGFLKLKIQST--------YGPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 231 ~~~l~V~nLp-----~~~t~~~L~~~F~~fG~i~~v~i~~~--------~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
...+.+.|+- .+-.+++|++.|++||.|.+|.+..+ ..+|++||+|.+.++|.+|++.|||+.+.
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~-- 201 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA-- 201 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS--
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC--
Confidence 3455565553 23467899999999999999999752 34569999999999999999999999999
Q ss_pred CCCCeEEEEecCC
Q 020954 298 PTSDGIRLEFAKS 310 (319)
Q Consensus 298 ~~G~~i~V~~ak~ 310 (319)
||.|+++|...
T Consensus 202 --gr~i~~~~~~~ 212 (222)
T 3dxb_A 202 --GRKVVAEVYDQ 212 (222)
T ss_dssp --SSBCEEEECCH
T ss_pred --CeEEEEEEcCH
Confidence 66799999753
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.9e-08 Score=71.90 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=64.6
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcC-----CCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKC-----PGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~f-----G~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.++|-|-|||+.+++..|+.+...+ |.|+.|.+..+.+ =|+|+|.|...|.+|.-+|||.+|. ||+|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~----gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQ----GKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEET----TEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeec----CeEEEe
Confidence 5689999999999999999999999 9999999998654 6999999999999999999999999 567998
Q ss_pred E
Q 020954 306 E 306 (319)
Q Consensus 306 ~ 306 (319)
.
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 6
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1.3e-08 Score=71.45 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=54.4
Q ss_pred ceEEEeCCCCC-----CCH----HHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEE
Q 020954 69 RTLFVAGLPED-----VKP----REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLY 135 (319)
Q Consensus 69 ~~l~V~nLp~~-----~t~----~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~ 135 (319)
.||+|.-++.+ +-. .+|.+.|+.||.|..+++..+. +||+|.+.++|.+||+ |+ .|+.|+
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 89999988743 222 4589999999999999998644 9999999999999998 88 999999
Q ss_pred EEEc
Q 020954 136 IDLA 139 (319)
Q Consensus 136 v~~a 139 (319)
|++-
T Consensus 89 V~~k 92 (95)
T 1ufw_A 89 ISGP 92 (95)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9763
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.58 E-value=7.7e-08 Score=80.44 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=55.2
Q ss_pred CCHHHHHHHhhcCCCccEEEEecC------CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEccc
Q 020954 80 VKPREIYNLFREFPGYESSHLRSS------TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLAKS 141 (319)
Q Consensus 80 ~t~~~L~~~F~~~G~v~~v~i~~~------~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a~~ 141 (319)
-.+++|++.|++||.|.++.|..+ +++++|++||+|.+.++|++|+..|| .||.|++.|+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 345689999999999999999754 44889999999999999999999999 999999999854
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.7e-06 Score=61.89 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=61.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcC-----CCccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEE
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREF-----PGYESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYI 136 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v 136 (319)
..|+|-+-|||..+++..|+.+.+.+ |.|..+.++.| .| |+|+|.|...|-+|.-.|+ .|+.|+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-----Aivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-----AIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-----EEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-----eEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 45999999999999999999999999 99999999887 44 9999999999999998898 9999999
Q ss_pred EEc
Q 020954 137 DLA 139 (319)
Q Consensus 137 ~~a 139 (319)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 654
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.31 E-value=2.5e-06 Score=60.92 Aligned_cols=76 Identities=13% Similarity=0.212 Sum_probs=63.5
Q ss_pred cCEEEEcCCCCCC-C----HHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 231 CATLFVANLGPTC-T----EQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 231 ~~~l~V~nLp~~~-t----~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
-++|+|.||+.++ + .+.++++|..|+.+......+.- .-..|.|.+.++|.+|...|||..+. |+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF--RRirv~F~~~~~A~~AR~~Lh~~~f~----g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF--KRVRINFSNPLSAADARLRLHKTEFL----GKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT--TEEEEECSSTTHHHHHHHTSTTSEET----TEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc--eEEEEEeCChHHHHHHHHHhccceec----CceeEE
Confidence 3479999998765 2 25778999999999998888633 36899999999999999999999999 557999
Q ss_pred EecCCCC
Q 020954 306 EFAKSRM 312 (319)
Q Consensus 306 ~~ak~~~ 312 (319)
-|+..-.
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998543
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.28 E-value=9.2e-06 Score=57.03 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=64.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCC-----C-CEEEEEecChHHHHHHHHHhCCCcccCCCCCCeE--
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYG-----P-PVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGI-- 303 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~-----~-~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i-- 303 (319)
+.|.|++||+.+||+++.+.++....+.....+.++. . ..|+|.|.+.+++..-.+.++|+.+.+.. |..-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k-g~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNK-GQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTT-CCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC-CCEeee
Confidence 3689999999999999999999999888888776331 1 18999999999999999999999998886 6543
Q ss_pred EEEecC
Q 020954 304 RLEFAK 309 (319)
Q Consensus 304 ~V~~ak 309 (319)
.|+||-
T Consensus 81 ~VE~AP 86 (91)
T 1uw4_A 81 IVEFAP 86 (91)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 466664
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=4.4e-05 Score=56.03 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=54.7
Q ss_pred CcCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCC
Q 020954 230 PCATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSS 297 (319)
Q Consensus 230 ~~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~ 297 (319)
..+.|.|.+.+... ...|...|++||+|++.... .+.++-.|+|.+..+|++||. .||..|++.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~--~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS--NTGNWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC--SSSSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC--CCCCeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 46678899999986 57788889999999998873 455699999999999999999 799999854
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=0.00019 Score=50.94 Aligned_cols=66 Identities=17% Similarity=0.066 Sum_probs=53.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhc-----CCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHH-cC--CCcEEEEE
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFRE-----FPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA-LN--KGSTLYID 137 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~-----~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~-l~--~g~~l~v~ 137 (319)
...++|.|.|||.++.++.|.-+|+. =|+|++++... +-|+|+|.+.+.|++.|+. -+ .+..|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 34589999999999999999999987 14588887753 4499999999999999976 33 66777773
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=0.00015 Score=51.44 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=53.0
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhc---C--CCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEE
Q 020954 231 CATLFVANLGPTCTEQELTQVFSK---C--PGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRL 305 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~---f--G~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V 305 (319)
.++|.|.|||.++.++.|.-.|+. - |.|.+|+... .-|+|+|.+.+.|++.|+. .-+.|.+. .|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~----~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGA----QLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSS----BCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCe----EEEE
Confidence 678999999999999999999988 2 4888888775 4799999999999999884 23344422 3666
Q ss_pred E
Q 020954 306 E 306 (319)
Q Consensus 306 ~ 306 (319)
.
T Consensus 79 ~ 79 (104)
T 2dhx_A 79 R 79 (104)
T ss_dssp E
T ss_pred E
Confidence 4
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.65 E-value=0.00013 Score=51.05 Aligned_cols=54 Identities=24% Similarity=0.367 Sum_probs=44.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
+-++| ++|..+...||.++|+.||.|. |+.+.|+ .|||.|.+.+.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-----EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 55666 9999999999999999999764 4444444 39999999999999999875
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.63 E-value=0.00013 Score=51.40 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=60.0
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC------CCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCe--
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY------GPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDG-- 302 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~------~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~-- 302 (319)
+-.|.|+.||+.+||+++.+.++..-++.....+.++ .-..|+|.|.+.++...-.+.++|+.+.+.+ |..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~k-g~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSK-GLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTT-CCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCC-CCEee
Confidence 4579999999999999999888877665444444311 1128999999999999999999999998886 653
Q ss_pred EEEEecC
Q 020954 303 IRLEFAK 309 (319)
Q Consensus 303 i~V~~ak 309 (319)
-.|+||-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 3466653
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.63 E-value=8e-05 Score=52.38 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=45.9
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQ 290 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~ln 290 (319)
.++++| ++|.++...||.++|+.||.| .|+-+.+. .|||.|.+.+.|..|+..++
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 557778 999999999999999999943 44444443 69999999999999999875
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.56 E-value=0.00033 Score=49.11 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=45.7
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQ 290 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~ln 290 (319)
.++++| ++|.++...||.++|+.||.|. |+-+.+. .|||.|.+.+.|..|++.++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 567788 9999999999999999999544 3434333 69999999999999999874
No 392
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.51 E-value=0.00018 Score=51.30 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=57.4
Q ss_pred ceEEEeCCCCCC-CH----HHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC----CCcEEEEEEc
Q 020954 69 RTLFVAGLPEDV-KP----REIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN----KGSTLYIDLA 139 (319)
Q Consensus 69 ~~l~V~nLp~~~-t~----~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~----~g~~l~v~~a 139 (319)
++|+|.||+.++ +. +.++++|..|+++........-+ + ..|.|.+.++|.+|...|+ .|+.|+|.|+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--R--irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--R--VRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--E--EEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--E--EEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 789999998875 32 35789999999988777665322 3 7899999999999999999 9999999998
Q ss_pred cc
Q 020954 140 KS 141 (319)
Q Consensus 140 ~~ 141 (319)
..
T Consensus 82 q~ 83 (104)
T 1wey_A 82 QT 83 (104)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.46 E-value=0.00016 Score=50.89 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=44.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
+-++| ++|..+...||.++|+.||.|. |+.+.|+ .|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 44556 9999999999999999999543 4444444 39999999999999999875
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.08 E-value=0.0032 Score=44.01 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=48.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC----CCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS----TQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~----~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
.+|.|++||+.+||+++.+.++....+........ ....-.-|||.|.+.+++....+.++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 57889999999999999999999887765555332 11122349999999999999998888
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.85 E-value=0.00054 Score=62.68 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=42.4
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHH
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALN 287 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~ 287 (319)
.++|+|. .+..+++.+|.+.|++||.|.++.+.++ .+-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-SSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-CCeEEEEEeCCHHHHHHHHh
Confidence 5789997 7999999999999999999999998863 33599999999999997755
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.83 E-value=0.00066 Score=62.08 Aligned_cols=57 Identities=16% Similarity=0.262 Sum_probs=43.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHH
Q 020954 67 EVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYA 127 (319)
Q Consensus 67 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 127 (319)
..|+|||. .+..+++.+|.++|++||.|.++.+..+.| -||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 35899998 799999999999999999999998876444 6999999999999987743
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.50 E-value=0.002 Score=47.92 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=51.8
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceE-EEEee----------------c-CCCCEEEEEecChHHHHHHHHHhCCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLK-LKIQS----------------T-YGPPVAFVDFQDTVSSTAALNNLQGT 292 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~-v~i~~----------------~-~~~~~aFV~F~~~~~A~~Al~~lnG~ 292 (319)
...|.|.+.|.+.+ ..+.+.|++||.|.+ +.... . .+..+.-|+|++..+|.+||. -||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 44677889988765 556678999999877 21110 0 134589999999999999999 8999
Q ss_pred cccCCCCCCeEEEEec
Q 020954 293 ILYSSPTSDGIRLEFA 308 (319)
Q Consensus 293 ~i~~~~~G~~i~V~~a 308 (319)
.|.+. .|=|..-
T Consensus 85 ii~G~----mIGV~Py 96 (132)
T 3p3d_A 85 VFNGV----LLGVIPY 96 (132)
T ss_dssp EETTE----ECEEEEC
T ss_pred EeCcE----EEEEEEC
Confidence 99854 4555443
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.35 E-value=0.0081 Score=42.24 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=43.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecC------CCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSS------TQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~------~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
-+|.|+.||+.+||+++.+.++..-++........ ..-++ |||.|.+.++.....+.++
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SR--AYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSR--AYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCC--CEEEESCHHHHHHHHHHST
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceE--EEEEeCCHHHHHHHHHHcC
Confidence 57899999999999998888876544322221111 11233 9999999999999998888
No 399
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.59 E-value=0.05 Score=39.78 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=51.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC---C-CcEEEEEEc
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN---K-GSTLYIDLA 139 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~---~-g~~l~v~~a 139 (319)
...+-|.|-+.+... .+.|.+.|++||.|.+... . ....+-.|.|.+..+|++||.... . +..|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~--~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--S--NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--C--SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--C--CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 345888899999885 5678899999999987776 2 234679999999999999996533 2 344555443
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.70 E-value=0.33 Score=45.13 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=47.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcCCCcEEEE
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALNKGSTLYI 136 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~~g~~l~v 136 (319)
...++|+ ++..+...+|.++|+.||.| +|+.+.+ ..|||.|.+.+.|..++..++....++|
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-----t~a~V~~~~~~~a~~~l~~~~~~~~~~i 501 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSKYAESYRI 501 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-----SEEEEECSCHHHHHHHHHHHTTCSSCEE
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-----CeEEEEECCHHHHHHHHHHHHhCCceEE
Confidence 4667776 88999999999999999965 4444433 3499999999999999999873333333
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.24 E-value=0.28 Score=45.67 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=46.0
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQG 291 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG 291 (319)
..+++|+ ++..+...+|.++|+.||.| +|+.+.+ ..|||.|.+.++|..++++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd---t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD---TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS---SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC---CeEEEEECCHHHHHHHHHHHHh
Confidence 4577787 88899999999999999954 4554443 3699999999999999998863
No 402
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.98 E-value=0.4 Score=35.51 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=49.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccE-EEEecC----------CC-----CCccEEEEEEcCHHHHHHHHHHcC--
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYES-SHLRSS----------TQ-----NSQPFAFAVFSDQQSALGAMYALN-- 129 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~----------~~-----~~~g~afV~f~~~~~A~~A~~~l~-- 129 (319)
...|.|-+.|.+. ...+.+.|++||.|.+ +.+... .. ....+..|+|.+..+|.+||..-.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 3567777887665 4567789999999855 222110 00 135578999999999999996544
Q ss_pred -CCcEEEEEEcc
Q 020954 130 -KGSTLYIDLAK 140 (319)
Q Consensus 130 -~g~~l~v~~a~ 140 (319)
.|..|-|...+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 77788887764
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=78.45 E-value=13 Score=25.19 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=47.0
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQG 291 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG 291 (319)
++-|-|-|+|..+-..++.-.....|---.|..+. |.|.|.|.+.++...|+..|-+
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHHEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHHHh
Confidence 67788999999999998888888888666666554 4799999999999999988743
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.35 E-value=9.9 Score=24.78 Aligned_cols=68 Identities=10% Similarity=0.187 Sum_probs=42.4
Q ss_pred EEEEcC-CCCCCCHHHHHHHhhcCC-----CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcccCCCCCCeEEEE
Q 020954 233 TLFVAN-LGPTCTEQELTQVFSKCP-----GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILYSSPTSDGIRLE 306 (319)
Q Consensus 233 ~l~V~n-Lp~~~t~~~L~~~F~~fG-----~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~~~~~G~~i~V~ 306 (319)
+|||.. --..++..+|..++..-+ .|-.|++.. .|.||+-.. +.|..+++.|++..+. |+.++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~~-~~~~~~~~~l~~~~i~----g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEILN-GKGPHVLKVMKNTTVK----GKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEECT-TCHHHHHHHHTTCCC-------CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEECH-HHHHHHHHHhccccCc----CceEEEE
Confidence 466631 123466677777766555 455667654 278998764 4688899999999998 5569888
Q ss_pred ecC
Q 020954 307 FAK 309 (319)
Q Consensus 307 ~ak 309 (319)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 405
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=51.04 E-value=7 Score=20.53 Aligned_cols=19 Identities=42% Similarity=0.733 Sum_probs=12.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHh
Q 020954 66 DEVRTLFVAGLPEDVKPREIYNLF 89 (319)
Q Consensus 66 ~~~~~l~V~nLp~~~t~~~L~~~F 89 (319)
...||||||+-| ++|+.+-
T Consensus 3 gqvrtiwvggtp-----eelkklk 21 (36)
T 2ki0_A 3 GQVRTIWVGGTP-----EELKKLK 21 (36)
T ss_dssp CSCCCCCBCCCH-----HHHHHHH
T ss_pred ceeEEEEecCCH-----HHHHHHH
Confidence 456999999754 5565554
No 406
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=52.88 E-value=4 Score=29.02 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=35.3
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecC--CCC-EEEE--EecChHHHHHHHHHhCC
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTY--GPP-VAFV--DFQDTVSSTAALNNLQG 291 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~--~~~-~aFV--~F~~~~~A~~Al~~lnG 291 (319)
..+|-|... .++++|..+..+.+ +..+.+.+.. ++. |..+ .|.+.++|.+|++.|-.
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 445655443 44667777777776 4455555422 222 3333 78899999999988753
No 407
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=46.75 E-value=43 Score=20.93 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=44.9
Q ss_pred cCEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCcc
Q 020954 231 CATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTIL 294 (319)
Q Consensus 231 ~~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i 294 (319)
..++.|.++.-.--...|.+.+.. ..|..+.+... .+.+.|+|.+.++...+|+.+ |+..
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~--~~~~~v~~~~~~~i~~~i~~~-Gy~~ 65 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN--EAVVAGNKEDVDKYIKAVEAA-GYQA 65 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS--EEEEEEEGGGHHHHHHHHHHT-TCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc--CCEEEEEECCHHHHHHHHHHc-CCce
Confidence 457899999988888999999999 89988887642 236888888566666777643 4443
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=44.76 E-value=39 Score=26.13 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=36.9
Q ss_pred eEEEeCCCC---------CCCHHHHHHHh--hcCCCccEEEEecCCCCCccEEEEEEcCH-HHHHHHHH
Q 020954 70 TLFVAGLPE---------DVKPREIYNLF--REFPGYESSHLRSSTQNSQPFAFAVFSDQ-QSALGAMY 126 (319)
Q Consensus 70 ~l~V~nLp~---------~~t~~~L~~~F--~~~G~v~~v~i~~~~~~~~g~afV~f~~~-~~A~~A~~ 126 (319)
++.|-|++. ..+..+|++.| +.|..+.. +.........|++.|.|.+- ..-..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv-~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRV-RPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEE-EEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCcee-EecccCCCCceeEEEEecCChHHHHHHHH
Confidence 455777775 14556899977 89998764 44444444788999999865 33444543
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.19 E-value=35 Score=26.37 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=36.3
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHh--hcCCCceEEEEee-cCCCCEEEEEecChHHH-HHHHH
Q 020954 233 TLFVANLGP-T--------CTEQELTQVF--SKCPGFLKLKIQS-TYGPPVAFVDFQDTVSS-TAALN 287 (319)
Q Consensus 233 ~l~V~nLp~-~--------~t~~~L~~~F--~~fG~i~~v~i~~-~~~~~~aFV~F~~~~~A-~~Al~ 287 (319)
++.|-|++. . .+..+|++.| +.|..+....+.. ....++|.|.|.+--.. ..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 566778886 2 4558999977 9998877555543 22345999999864433 34443
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.44 E-value=76 Score=21.37 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=37.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CC-CceEEEEeec-CCCCEEEEEecChHHHHHHHH
Q 020954 234 LFVANLGPTCTEQELTQVFSK-CP-GFLKLKIQST-YGPPVAFVDFQDTVSSTAALN 287 (319)
Q Consensus 234 l~V~nLp~~~t~~~L~~~F~~-fG-~i~~v~i~~~-~~~~~aFV~F~~~~~A~~Al~ 287 (319)
-|+-..+...+..+|++.++. || .|.+|+...- .+..-|+|++..-.+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344456788999999988876 44 5666665542 222379999998888776544
No 411
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=39.69 E-value=6.9 Score=29.64 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=18.5
Q ss_pred HHHHHHhhcCCCceEEEEeecCCCCEEEEEec
Q 020954 246 QELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQ 277 (319)
Q Consensus 246 ~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~ 277 (319)
+|+.++|...|.|+... ..++|+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn----~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN----VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE----TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE----CCCCeeEEeeC
Confidence 56667888888877765 35679999976
No 412
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.96 E-value=82 Score=21.22 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=36.6
Q ss_pred EeCCCCCCCHHHHHHHhhc-CCC-ccEEEEecC-CCCCccEEEEEEcCHHHHHHHHHH
Q 020954 73 VAGLPEDVKPREIYNLFRE-FPG-YESSHLRSS-TQNSQPFAFAVFSDQQSALGAMYA 127 (319)
Q Consensus 73 V~nLp~~~t~~~L~~~F~~-~G~-v~~v~i~~~-~~~~~g~afV~f~~~~~A~~A~~~ 127 (319)
+=....+.+..+|++.++. |+- |..|..... .|.-+ |+|.+....+|......
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KK--A~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKK--AYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEE--EEEEECTTSCHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceE--EEEEcCCCCcHHHHHHh
Confidence 3346778999999998886 663 566654433 34334 99999988887765443
No 413
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=32.61 E-value=1.1e+02 Score=20.55 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=49.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhcCCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC--CCcEEEEEE
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFREFPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN--KGSTLYIDL 138 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~g~~l~v~~ 138 (319)
+.-|-|-|+|..+-..++.-..+..|---.|..+ .|-|.+.|.+.++-..|+..|- ....|.++.
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi------dgqamirfqnsdeqrlaiqkllnhnnnklqiei 78 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEI 78 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 4567788999999998888777777754455554 3569999999999999987754 666777754
No 414
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=32.49 E-value=70 Score=23.29 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=21.5
Q ss_pred CCCceEEEEeecCCCCEEEEE-ecChHHHHHHHHHh
Q 020954 255 CPGFLKLKIQSTYGPPVAFVD-FQDTVSSTAALNNL 289 (319)
Q Consensus 255 fG~i~~v~i~~~~~~~~aFV~-F~~~~~A~~Al~~l 289 (319)
+=.|.+|++-.|-+-...||. |-+.++...+++.|
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHH
Confidence 447889998877664466666 55554444444444
No 415
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=32.23 E-value=85 Score=18.93 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=40.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecC---hHHHHHHHH
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQD---TVSSTAALN 287 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~---~~~A~~Al~ 287 (319)
.++.|.|+.-.--...+...+.....|..+.+... .+.+.|+|.+ .++..++++
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~--~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA--LEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT--TTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec--CCEEEEEECCCCCHHHHHHHHH
Confidence 46889999888778899999999999998887653 3468888853 334445554
No 416
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=28.06 E-value=1.1e+02 Score=18.80 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=41.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEec----ChHHHHHHHHH
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQ----DTVSSTAALNN 288 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~----~~~~A~~Al~~ 288 (319)
.++.|.|+.-.--...+...+.....|..+.+... .+.+.|+|. +.++...+++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~--~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL--QNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG--GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec--CCEEEEEECCCCCCHHHHHHHHHH
Confidence 46889999887778899999999989988887653 236889996 44566666664
No 417
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=26.86 E-value=1.4e+02 Score=21.62 Aligned_cols=50 Identities=6% Similarity=-0.096 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCC-CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCCccc
Q 020954 245 EQELTQVFSKCP-GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGTILY 295 (319)
Q Consensus 245 ~~~L~~~F~~fG-~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~~i~ 295 (319)
-.++.+.+...| .|..+.......+....|.+++.+.|.++|.. .|+.+.
T Consensus 86 la~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v~ 136 (144)
T 2f06_A 86 LAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDLL 136 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEEe
Confidence 456667777777 56554444223344667788888888888875 666553
No 418
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.67 E-value=51 Score=27.50 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=23.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCCccEE
Q 020954 69 RTLFVAGLPEDVKPREIYNLFREFPGYESS 98 (319)
Q Consensus 69 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v 98 (319)
.-+.|+|||+.++..-|.+++.. ..+...
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 45789999999999999999987 555443
No 419
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=24.25 E-value=1.7e+02 Score=19.71 Aligned_cols=35 Identities=3% Similarity=-0.005 Sum_probs=26.0
Q ss_pred CceEEEEeecCCCCEEEEEecChHHHHHHHHHhCCC
Q 020954 257 GFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNLQGT 292 (319)
Q Consensus 257 ~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~lnG~ 292 (319)
.|.++.+.. .-.||.||+++..++...+++.+.|.
T Consensus 39 ~i~~v~vP~-~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASE-SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECT-TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEec-ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 355555543 46789999999999988888876653
No 420
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=23.92 E-value=1.1e+02 Score=17.67 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=39.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecC---hHHHHHHHHHh
Q 020954 233 TLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQD---TVSSTAALNNL 289 (319)
Q Consensus 233 ~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~---~~~A~~Al~~l 289 (319)
++.|.|+.-..-...+...+.....|..+.+.. ..+.+.|+|.. .++..++++.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~--~~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSV--EKKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEET--TTTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEc--CCCEEEEEECCCCCHHHHHHHHHHc
Confidence 567888877767788999999988888888764 34478888863 34445555543
No 421
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=22.23 E-value=1.9e+02 Score=19.51 Aligned_cols=66 Identities=14% Similarity=0.274 Sum_probs=43.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhc-CCCccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC-CCcEEEEEE
Q 020954 68 VRTLFVAGLPEDVKPREIYNLFRE-FPGYESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN-KGSTLYIDL 138 (319)
Q Consensus 68 ~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~-~g~~l~v~~ 138 (319)
.+++.|+. ..+.+.++|..++.. || +..+.|......+- -|...+..+-+.|++..- .|..|++..
T Consensus 17 ~~rf~vs~-~~~~tweel~~mvk~~f~-L~~~~ikY~DEenD---~v~i~Sq~E~eEAlkva~k~~n~L~m~v 84 (87)
T 2bkf_A 17 IQSFLVSD-PENTTWADIEAMVKVSFD-LNTIQIKYLDEENE---EVSINSQGEYEEALKMAVKQGNQLQMQV 84 (87)
T ss_dssp EEEEEESC-GGGCCHHHHHHHHHHHHT-CSSEEEEEECTTSC---EEEECSHHHHHHHHHHHHHTTTEEEEEE
T ss_pred eeEEEecc-CCCCCHHHHHHHHHHHcC-CCceEEEEEcCCCC---EEEEecHHHHHHHHHHhccCCCEEEEEE
Confidence 45555543 357999999998874 66 45556655433233 466777888888887544 788888764
No 422
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=20.92 E-value=1.4e+02 Score=17.65 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=40.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecC----hHHHHHHHHHhCCC
Q 020954 232 ATLFVANLGPTCTEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQD----TVSSTAALNNLQGT 292 (319)
Q Consensus 232 ~~l~V~nLp~~~t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~----~~~A~~Al~~lnG~ 292 (319)
.+|.|.++.-......|...+.....|..+.+.. ..+.+.|.|.. .++...+++.+ |+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~--~~~~~~v~~~~~~~~~~~i~~~i~~~-G~ 68 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQL--AEGTVEVTIDSSVVTLKDIVAVIEDQ-GY 68 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEET--TTTEEEEEEETTTSCHHHHHHHHHHT-TC
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEe--cCCEEEEEECCCCCCHHHHHHHHHHc-CC
Confidence 4688999877666678888999988888888764 33478888863 34445556543 44
No 423
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=20.78 E-value=1.4e+02 Score=23.03 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=29.4
Q ss_pred CHHHHHHHhhcCCCceEEEEeecCCCCEEEEEecChHHHHHHHHHh
Q 020954 244 TEQELTQVFSKCPGFLKLKIQSTYGPPVAFVDFQDTVSSTAALNNL 289 (319)
Q Consensus 244 t~~~L~~~F~~fG~i~~v~i~~~~~~~~aFV~F~~~~~A~~Al~~l 289 (319)
.-++|+.+|..|-..+ .++.+.+-.|.+.++|.+.|+..
T Consensus 131 ~l~~i~~fF~~YK~le-------~gK~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 131 LKKRIVHFFEHYKDLE-------KGKWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp HHHHHHHHHHHTTTTS-------TTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-------CCCcEEEccCcCHHHHHHHHHHH
Confidence 3578889999995443 34557788899999999888753
No 424
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=20.39 E-value=74 Score=29.27 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=27.7
Q ss_pred HHHHHh--hcCCCceEEEEeecCCC---CEEEEEecChHHHHHHHH
Q 020954 247 ELTQVF--SKCPGFLKLKIQSTYGP---PVAFVDFQDTVSSTAALN 287 (319)
Q Consensus 247 ~L~~~F--~~fG~i~~v~i~~~~~~---~~aFV~F~~~~~A~~Al~ 287 (319)
+|..+| +.+|-|+++.+...... ..+++.|.+.++|.+|++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 356777 46898999887642222 257889999888766443
No 425
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.17 E-value=1.3e+02 Score=21.12 Aligned_cols=32 Identities=9% Similarity=0.082 Sum_probs=25.9
Q ss_pred ccEEEEecCCCCCccEEEEEEcCHHHHHHHHHHcC
Q 020954 95 YESSHLRSSTQNSQPFAFAVFSDQQSALGAMYALN 129 (319)
Q Consensus 95 v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 129 (319)
|.++... ..-+||-|||=.+..+...|++.+.
T Consensus 41 I~Si~~~---~~lkGyIyVEA~~~~~V~~ai~gi~ 72 (106)
T 3h7h_B 41 IKSVVAP---EHVKGYIYVEAYKQTHVKQAIEGVG 72 (106)
T ss_dssp CCEEEEC---TTCCSEEEEEESSHHHHHHHHTTCG
T ss_pred eEEEEec---CCCceEEEEEeCCHHHHHHHHhccc
Confidence 6666664 3458999999999999999997665
Done!