BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020955
(319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19954|PRSP1_SPIOL Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea
GN=PSRP1 PE=1 SV=2
Length = 302
Score = 347 bits (891), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 167/237 (70%), Positives = 202/237 (85%), Gaps = 11/237 (4%)
Query: 84 KPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR 143
KP V MSWDGPLSSVKLI+QG+NLE++D V++HVE+KVGK+V KHSHLVREVDVRLS R
Sbjct: 60 KPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSAR 119
Query: 144 GGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG 203
GG+ KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+K SDHG
Sbjct: 120 GGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHG 179
Query: 204 RHMKGFNRLKVREP---------VTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTV 254
RHMKGFNR KVR+P V + VE+ A EDD+F++E+VR K+F+MPPLT+
Sbjct: 180 RHMKGFNRSKVRDPEPVRITREEVLEEVES-APAPVSVEDDDFIEEVVRTKYFDMPPLTI 238
Query: 255 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVET 311
+EA+EQLENVDHDFY FRNEETG+INI+YKRK GGYG+IIPK +GK +KLE L V+T
Sbjct: 239 TEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK-DGKTEKLESLPVQT 294
>sp|P74518|LRTA_SYNY3 Light-repressed protein A homolog OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=lrtA PE=3 SV=1
Length = 191
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 125/202 (61%), Gaps = 20/202 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +T+ + ++VEEKV +AV +L +VDV LSV + RI +
Sbjct: 1 MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ I R+LRK KE+ D K +K
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVADKIARQLRKYKERIQD-----KQHGNVKTS 109
Query: 216 EPVTQ--VVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
E V V EN ++ E E++RMK+F MPP+ + +A+EQL+ VDHDFY FRN
Sbjct: 110 EIVEDKPVEENLIGDRAPE----LPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRN 165
Query: 274 EETGEINIVYKRKAGGYGVIIP 295
++T EIN++Y R GGYGVI P
Sbjct: 166 KDTDEINVIYIRNHGGYGVIQP 187
>sp|P47908|LRTA_SYNP2 Light-repressed protein A OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=lrtA PE=2 SV=2
Length = 193
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 120/203 (59%), Gaps = 19/203 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +T+++ ++VE K+ KA +VDV LSV RI +
Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSV-----ANNARITDKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK H V+
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTH--------VQ 106
Query: 216 EPVTQVVENDA--DVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 273
E ++V+ D D + E+VRMK+F MPP+T+ EA+EQL+ VDHDFY F N
Sbjct: 107 EKTSEVLPEDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLN 166
Query: 274 EETGEINIVYKRKAGGYGVIIPK 296
++T IN++Y R GGYGVI P+
Sbjct: 167 KDTNAINVIYIRNHGGYGVIQPR 189
>sp|Q9RVE7|Y1082_DEIRA Uncharacterized protein DR_1082 OS=Deinococcus radiodurans (strain
ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC
15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1082 PE=1
SV=1
Length = 191
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 114/196 (58%), Gaps = 18/196 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+E+T+ ++ +VEEK+ + + +++ + + V L+VR + R R EV L
Sbjct: 6 LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQLNV 62
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR-EPVTQV 221
G++RAEE +YA+ID S +++R+LRK K R+MK R + R EP+
Sbjct: 63 PG-GIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMK--QRQEGRPEPLPGP 113
Query: 222 VENDADVQS--EEEDD--NFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 277
E + + Q DD F EIVR K FE+ P++ +A+ Q+E + HDFY F++ + G
Sbjct: 114 AEAEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-G 172
Query: 278 EINIVYKRKAGGYGVI 293
+ +VY+R+ G YG+I
Sbjct: 173 QTGVVYRRRDGHYGLI 188
>sp|Q4L4H7|Y2139_STAHJ Uncharacterized protein SH2139 OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=SH2139 PE=3 SV=1
Length = 192
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 16/199 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++E+K+GK + ++ + V + V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGK-LERYFNDVPNAVAHVKVKTYQNSTT----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDLV+S ++R++RK K K HG ++
Sbjct: 57 TI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTHGEPEAFVAEVQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
P EN DV +E +D+ + EI+R K F + P+ EA+ Q+E + HDFY F +
Sbjct: 116 APP-----ENVDDVNAEPTNDSEI-EIIRSKQFSLKPMDSEEAVLQMELLGHDFYIFTDR 169
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVYKRK G YG+I
Sbjct: 170 ETDGTSIVYKRKDGKYGLI 188
>sp|Q8CTF2|Y534_STAES Uncharacterized protein SE_0534 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=SE_0534 PE=3 SV=1
Length = 189
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
N AD E D EI+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTTNNHADDIESENDI----EIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRETDG 170
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 171 TSIVYRRKDGKYGLI 185
>sp|Q5HQX7|Y419_STAEQ Uncharacterized protein SERP0419 OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=SERP0419 PE=3 SV=1
Length = 189
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
N AD E D EI+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTTNNHADDIESENDI----EIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRETDG 170
Query: 279 INIVYKRKAGGYGVI 293
+IVY+RK G YG+I
Sbjct: 171 TSIVYRRKDGKYGLI 185
>sp|Q49VV1|Y1964_STAS1 Uncharacterized protein SSP1964 OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=SSP1964 PE=3 SV=1
Length = 190
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 113/198 (57%), Gaps = 16/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+NL +TD ++N++EEK+GK + ++ + V + V+ + + EV
Sbjct: 2 IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNDVPNATAHVKVKTYQNSAT----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR---HMKGFNRLKVR 215
T+ KK +RAEE + +YA IDL+++ ++R++RK K + + R + F L
Sbjct: 57 TIPLKK-VTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRGEQEAFASLPEE 115
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 275
+ ++ +ND E E DN + EI+R K F + P+ EA+ Q++ + HDF+ F + E
Sbjct: 116 KEAVEI-QND-----ENEADNEI-EIIRAKNFSLKPMDSEEAVLQMDLLGHDFFIFTDRE 168
Query: 276 TGEINIVYKRKAGGYGVI 293
T +IVYKRK G YG+I
Sbjct: 169 TDGTSIVYKRKDGKYGLI 186
>sp|Q6GIN9|Y806_STAAR Uncharacterized protein SAR0806 OS=Staphylococcus aureus (strain
MRSA252) GN=SAR0806 PE=3 SV=1
Length = 190
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>sp|Q2G055|Y767_STAA8 Uncharacterized protein SAOUHSC_00767 OS=Staphylococcus aureus
(strain NCTC 8325) GN=SAOUHSC_00767 PE=3 SV=1
Length = 190
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>sp|Q99VM3|Y752_STAAM Uncharacterized protein SAV0752 OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=SAV0752 PE=1 SV=1
Length = 190
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>sp|Q2FIN9|Y736_STAA3 Uncharacterized protein SAUSA300_0736 OS=Staphylococcus aureus
(strain USA300) GN=SAUSA300_0736 PE=3 SV=1
Length = 190
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>sp|Q6GB78|Y717_STAAS Uncharacterized protein SAS0717 OS=Staphylococcus aureus (strain
MSSA476) GN=SAS0717 PE=3 SV=1
Length = 190
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>sp|Q7A1G5|Y714_STAAW Uncharacterized protein MW0714 OS=Staphylococcus aureus (strain
MW2) GN=MW0714 PE=3 SV=1
Length = 190
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>sp|Q7A6R6|Y707_STAAN Uncharacterized protein SA0707 OS=Staphylococcus aureus (strain
N315) GN=SA0707 PE=1 SV=1
Length = 190
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>sp|Q2YSH7|Y704_STAAB Uncharacterized protein SAB0704 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=SAB0704 PE=3 SV=1
Length = 190
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>sp|P47995|Y400_STACT Uncharacterized protein Sca_0400 OS=Staphylococcus carnosus (strain
TM300) GN=Sca_0400 PE=3 SV=2
Length = 188
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 27/202 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++E+KVGK + +V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKVGKL---ERYFTNVPNVNAHVKVKTYANSST--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK-------EKESDHGRHMKGFNR 211
T+ +RAEE + +YA IDL+++ ++R++RK K KES+H
Sbjct: 57 TI-PLNDVTLRAEERNDDLYAGIDLITNKLERQVRKYKTRVNRKKRKESEH--------- 106
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 271
EP E + + + D+ + EI+R K F + P+ EA+ Q++ + HDF+ F
Sbjct: 107 ----EPFPATPETPPETAVDHDKDDEI-EIIRSKQFSLKPMDSEEAVLQMDLLGHDFFIF 161
Query: 272 RNEETGEINIVYKRKAGGYGVI 293
+ ET +IVY+RK G YG+I
Sbjct: 162 NDRETDGTSIVYRRKDGKYGLI 183
>sp|Q5HHR8|Y815_STAAC Uncharacterized protein SACOL0815 OS=Staphylococcus aureus (strain
COL) GN=SACOL0815 PE=3 SV=1
Length = 190
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 19/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ TQV +NDA DDN + EI+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEI-EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFIDR 166
Query: 275 ETGEINIVYKRKAGGYGVI 293
ET +IVY+RK G YG+I
Sbjct: 167 ETDGTSIVYRRKDGKYGLI 185
>sp|P28368|YVYD_BACSU Putative sigma-54 modulation protein OS=Bacillus subtilis (strain
168) GN=yvyD PE=1 SV=2
Length = 189
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 108/201 (53%), Gaps = 26/201 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T +K+HVE K+GK H V + DV ++++ + + EVT+
Sbjct: 5 IRGENIEVTPALKDHVERKIGKLERYFDHSV-DADVNVNLKF----YNDKESKVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP----- 217
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 59 MTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPKY 107
Query: 218 -VTQVVENDAD--VQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 274
+ + +D D VQ + E++ +D IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 108 LLANGLGSDTDIAVQDDIEEEESLD-IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTNA 166
Query: 275 ETGEINIVYKRKAGGYGVIIP 295
ET N+VY+R G YG+I P
Sbjct: 167 ETNLTNVVYRRNDGKYGLIEP 187
>sp|Q5XAQ7|RAFY_STRP6 Ribosome-associated factor Y OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=M6_Spy1371 PE=1
SV=1
Length = 182
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 110/198 (55%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ R + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFAKDQEIDARVNLKVYR----ERSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 278
QV + ++EE D+ ++VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 GQVFT--TEFEAEEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGA 164
Query: 279 INIVYKRKAGGYGVIIPK 296
NI+Y+R+ G G+I K
Sbjct: 165 TNILYRREDGNLGLIEAK 182
>sp|P17265|Y380_RHIME Uncharacterized protein R00380 OS=Rhizobium meliloti (strain 1021)
GN=R00380 PE=3 SV=2
Length = 190
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 14/192 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ GK++E+ D+ + + E++ +AV K+ V + G F C++ L T
Sbjct: 5 VSGKHMEIGDSFRVRIGEQIEQAVTKYFDGGYSSQVTVEKSGSRFSAD-----CKLHLDT 59
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
GVV +A A ++ D S I+++LR+ K K DH + G N +V V
Sbjct: 60 ---GVVLQANGQANEPQSAFDAASERIEKRLRRYKRKLKDH-HNGNGQNSTEVAYRVMDS 115
Query: 222 VENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 281
V + EE D++ IV ++ ++V+ A+ L+ D FR+ ++NI
Sbjct: 116 VP----FEDEEVPDDYAPTIVAETTKQLRTMSVANAVMALDMTDEPVLMFRSPGKDDLNI 171
Query: 282 VYKRKAGGYGVI 293
VY+R G G I
Sbjct: 172 VYRRNDGNIGWI 183
>sp|P30334|Y724_BRAJA Uncharacterized protein blr0724 OS=Bradyrhizobium japonicum (strain
USDA 110) GN=blr0724 PE=3 SV=1
Length = 203
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 88/199 (44%), Gaps = 9/199 (4%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ L I GK++ + + ++ V ++ + + K+ + LS G F R +
Sbjct: 1 MTLRISGKSVSVGEALRGRVSDRTEEVLRKYFDGNYSGHITLSKDGFGF-------RTDC 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG--RHMKGFNRLKVRE 216
L + A+ +A YAS D +I+++L++ K + D + L +
Sbjct: 54 ALHLDSGITLEADSNAPDAYASADQALVMIEKRLKRYKSRLKDRSARKAHVASAALAAMD 113
Query: 217 PVTQVVENDADVQSEEEDDNFVDEIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 276
+ V+E + + E+E + I+ + L+VSEA+ +L+ F++ +
Sbjct: 114 ATSYVLEAPGEGEDEDEVTGYSPVIIAEATTSLKQLSVSEAVMELDLSGAPCLVFQHGSS 173
Query: 277 GEINIVYKRKAGGYGVIIP 295
G +NI+Y+R G G + P
Sbjct: 174 GRVNIIYRRADGNVGWVDP 192
>sp|P17160|HPF_AZOVI Ribosome hibernation promoting factor OS=Azotobacter vinelandii
GN=hpf PE=3 SV=1
Length = 107
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G L++TD ++++VEEK+ + + +H + V V ++V + ++ E TL
Sbjct: 5 ISGHQLDVTDALRDYVEEKISR-LERHFDRITSVQVIMTVEKLK-------QKIEATLHV 56
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE 199
VV A + E +YA+IDL++ + R+L K KEK+
Sbjct: 57 SGAEVV-ANAEHEDMYAAIDLLADKLDRQLIKHKEKQ 92
>sp|Q8KA32|Y080_BUCAP Uncharacterized protein BUsg_080 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_080 PE=4 SV=1
Length = 968
Score = 37.0 bits (84), Expect = 0.19, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 61 SYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEE 120
S+ + FF FK I R +K H L ++ W+ L ++ K L +T + H+
Sbjct: 584 SFPNKFFADFKNI---RFSKFHINSLHIKSDWNNINQKFSLSLKDKKLSITFILNGHLNR 640
Query: 121 KVG--KAVLKHSHLVREVDVRLS 141
KVG K VLK ++DV+ S
Sbjct: 641 KVGIWKGVLK------KIDVKTS 657
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,105,132
Number of Sequences: 539616
Number of extensions: 4961562
Number of successful extensions: 80321
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 49280
Number of HSP's gapped (non-prelim): 16454
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)