Query 020955
Match_columns 319
No_of_seqs 258 out of 1407
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 10:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ka5_A Ribosome-associated pro 100.0 1.3E-30 4.6E-35 195.1 7.6 60 240-299 1-60 (65)
2 4fyl_A Ribosome hibernation pr 100.0 1.6E-29 5.4E-34 202.6 14.0 95 99-202 1-95 (95)
3 3lyv_A Ribosome-associated fac 100.0 1.4E-30 4.7E-35 195.7 6.4 61 240-300 2-62 (66)
4 3k2t_A LMO2511 protein; lister 100.0 1.3E-30 4.5E-35 190.9 5.1 57 240-296 1-57 (57)
5 2ywq_A Protein Y, ribosomal su 100.0 5E-29 1.7E-33 202.4 12.8 103 98-204 1-103 (105)
6 3tqm_A Ribosome-associated fac 100.0 1.1E-28 3.6E-33 197.8 11.5 96 99-203 1-96 (96)
7 3v26_X ORF3, ORF95, probable s 100.0 2.4E-28 8.3E-33 198.0 11.7 98 99-205 1-98 (101)
8 3v2c_Y Ribosome-associated inh 99.9 1.5E-27 5.2E-32 198.8 12.3 98 99-205 1-98 (119)
9 1imu_A Hypothetical protein HI 99.9 8.2E-28 2.8E-32 196.4 10.4 97 99-204 1-97 (107)
10 1pu1_A Hypothetical protein MT 81.6 2.9 0.0001 32.9 5.7 58 132-197 37-94 (94)
11 3ueb_A Putative uncharacterize 71.1 7.8 0.00027 30.6 5.5 60 132-198 46-105 (110)
12 1lsh_B Lipovitellin (LV-2); vi 65.8 1.3 4.3E-05 42.1 0.0 34 163-196 139-173 (319)
13 4hhu_A OR280; engineered prote 62.8 64 0.0022 26.6 10.3 40 159-199 76-115 (170)
14 1lsh_B Lipovitellin (LV-2); vi 45.4 4.4 0.00015 38.4 0.0 38 86-124 114-166 (319)
15 2rrl_A FLIK, flagellar HOOK-le 39.6 67 0.0023 27.6 6.6 71 112-193 68-139 (169)
16 2kxo_A Cell division topologic 38.9 1.2E+02 0.0041 23.5 7.4 58 99-163 22-82 (95)
17 3ku7_A MINE, cell division top 38.6 86 0.0029 23.6 6.3 56 99-163 23-79 (80)
18 3be3_A Uncharacterized protein 35.8 24 0.0008 27.6 2.8 25 272-296 28-55 (91)
19 2cg8_A Dihydroneopterin aldola 28.8 2.6E+02 0.009 25.3 9.2 80 105-190 66-146 (270)
20 1ghh_A DINI, DNA-damage-induci 28.4 1.3E+02 0.0044 22.7 5.8 43 99-141 1-45 (81)
21 2ia7_A Tail lysozyme, putative 27.8 2E+02 0.0069 22.7 7.4 39 103-143 62-100 (134)
22 2krg_A Na(+)/H(+) exchange reg 25.6 58 0.002 28.6 3.9 13 84-96 198-210 (216)
23 2j73_A Pullulanase; alpha-gluc 24.6 27 0.00091 27.2 1.4 15 276-290 3-17 (103)
24 3ge2_A Lipoprotein, putative; 23.7 22 0.00074 29.3 0.7 7 62-68 50-56 (130)
25 1nnx_A Protein YGIW; structura 21.8 32 0.0011 27.5 1.3 24 264-288 50-73 (109)
26 3f6g_B Alpha-isopropylmalate s 20.9 1.7E+02 0.0059 23.3 5.7 35 154-189 18-52 (127)
27 1lyp_A CAP18; lipopolysacchari 20.4 55 0.0019 20.1 1.9 15 188-202 2-16 (32)
No 1
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=99.96 E-value=1.3e-30 Score=195.11 Aligned_cols=60 Identities=42% Similarity=0.792 Sum_probs=56.1
Q ss_pred eEEEeeeccCCCCCHHHHHHHHhcCCCcEEEEeeCCCCceeEEEEecCCcEEEEEeCCCC
Q 020955 240 EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNG 299 (319)
Q Consensus 240 ~IVr~K~f~lkPMSveEAV~QMEllghdF~vF~N~eTg~vnVVYRRkDG~YGLIeP~~~~ 299 (319)
+|||+|.|+++|||+||||+|||++||+||||+|++||++||||||+||+||||+|..+.
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yGlI~p~~~~ 60 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYGLIEPELEH 60 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEEEEECC---
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCccc
Confidence 489999999999999999999999999999999999999999999999999999999875
No 2
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=99.96 E-value=1.6e-29 Score=202.61 Aligned_cols=95 Identities=33% Similarity=0.463 Sum_probs=89.0
Q ss_pred eEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHH
Q 020955 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178 (319)
Q Consensus 99 MkI~ItgRnvelTdaLreyIeeKl~K~L~Ky~~~i~~a~V~Ls~e~~~~~kg~~~~~vEItV~~~~g~~IrAee~a~D~Y 178 (319)
|+|+|+||||++||+|++||++||+| |+|||+++++++|+|+++++. ++|||+|+++ |..|+|++.++|||
T Consensus 1 M~i~I~g~~i~vt~al~~~v~~Kl~k-l~k~~~~i~~~~V~l~~e~~~-------~~vei~i~~~-g~~l~a~~~~~d~y 71 (95)
T 4fyl_A 1 MQINIQGHHIDLTDSMQDYVHSKFDK-LERFFDHINHVQVILRVEKLR-------QIAEATLHVN-QAEIHAHADDENMY 71 (95)
T ss_dssp CEEEEEEESSCCCHHHHHHHHHHHHH-HTTTCCCEEEEEEEEEEETTE-------EEEEEEEEET-TEEEEEEEEESSHH
T ss_pred CEEEEEEECCccCHHHHHHHHHHHHH-HHHhcCCCeEEEEEEEEecCc-------EEEEEEEEeC-CcEEEEEEecCCHH
Confidence 99999999999999999999999999 999999999999999999753 8999999998 68999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhc
Q 020955 179 ASIDLVSSIIQRKLRKIKEKESDH 202 (319)
Q Consensus 179 aAID~A~dKLeRQLrK~KeKlkd~ 202 (319)
+|||.|+|+|+|||+|||+|+++|
T Consensus 72 ~AiD~a~dklerQlrk~K~K~~~H 95 (95)
T 4fyl_A 72 AAIDSLVDKLVRQLNKHKEKLSSH 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999876
No 3
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=99.96 E-value=1.4e-30 Score=195.71 Aligned_cols=61 Identities=36% Similarity=0.624 Sum_probs=57.7
Q ss_pred eEEEeeeccCCCCCHHHHHHHHhcCCCcEEEEeeCCCCceeEEEEecCCcEEEEEeCCCCc
Q 020955 240 EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGK 300 (319)
Q Consensus 240 ~IVr~K~f~lkPMSveEAV~QMEllghdF~vF~N~eTg~vnVVYRRkDG~YGLIeP~~~~~ 300 (319)
+|||+|.|+++|||+||||+|||++||+||||+|++||++||||||+||+||||+|..+.+
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yGlI~p~~~~~ 62 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLGLIEAKLEHH 62 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEEEEEECCC--
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCEEEEEeCcccc
Confidence 5899999999999999999999999999999999999999999999999999999998753
No 4
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=99.96 E-value=1.3e-30 Score=190.88 Aligned_cols=57 Identities=44% Similarity=0.743 Sum_probs=51.9
Q ss_pred eEEEeeeccCCCCCHHHHHHHHhcCCCcEEEEeeCCCCceeEEEEecCCcEEEEEeC
Q 020955 240 EIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 296 (319)
Q Consensus 240 ~IVr~K~f~lkPMSveEAV~QMEllghdF~vF~N~eTg~vnVVYRRkDG~YGLIeP~ 296 (319)
+|||+|.|+++|||+||||+|||++||+||||+|++||++||||||+||+||||+|.
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~yGlI~p~ 57 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKYGLIETN 57 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCEEEECC-
T ss_pred CeEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEeeC
Confidence 389999999999999999999999999999999999999999999999999999984
No 5
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=99.96 E-value=5e-29 Score=202.41 Aligned_cols=103 Identities=25% Similarity=0.381 Sum_probs=86.5
Q ss_pred ceEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCH
Q 020955 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 177 (319)
Q Consensus 98 ~MkI~ItgRnvelTdaLreyIeeKl~K~L~Ky~~~i~~a~V~Ls~e~~~~~kg~~~~~vEItV~~~~g~~IrAee~a~D~ 177 (319)
||+|+|+|+||++|++|++||++||++ |+||++++++++|+|++++++ +++..++|||+|+++ |.+|+|++.++||
T Consensus 1 ~M~i~I~g~~i~~t~al~~~v~~kl~k-L~r~~~~i~~~~V~l~~e~~~--~~~~~~~~eitv~~~-g~~l~a~~~~~d~ 76 (105)
T 2ywq_A 1 MNIYKLIGRNLEITDAIRDYVEKKLAR-LDRYQDGELMAKVVLSLAGSP--HVEKKARAEIQVDLP-GGLVRVEEEDADL 76 (105)
T ss_dssp CEEEEEEEETSCCCHHHHHHHHHHHHG-GGGSCSSCCEEEEEEEECC--------CEEEEEEEEET-TEEEEEEEEESSH
T ss_pred CcEEEEEEecCcCCHHHHHHHHHHHHH-HHHhcCCCeEEEEEEEEecCC--CCCCceEEEEEEEcC-CcEEEEEEccCCH
Confidence 699999999999999999999999998 999999999999999999863 222358999999998 6899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhccC
Q 020955 178 YASIDLVSSIIQRKLRKIKEKESDHGR 204 (319)
Q Consensus 178 YaAID~A~dKLeRQLrK~KeKlkd~~r 204 (319)
|+|||.|+|||+|||+|||+|+++|++
T Consensus 77 y~Aid~a~dklerqL~k~k~K~~~~~~ 103 (105)
T 2ywq_A 77 YAAIDRAVDRLETQVKRFRERRYVGKR 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999998864
No 6
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=99.96 E-value=1.1e-28 Score=197.80 Aligned_cols=96 Identities=14% Similarity=0.360 Sum_probs=88.1
Q ss_pred eEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHH
Q 020955 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178 (319)
Q Consensus 99 MkI~ItgRnvelTdaLreyIeeKl~K~L~Ky~~~i~~a~V~Ls~e~~~~~kg~~~~~vEItV~~~~g~~IrAee~a~D~Y 178 (319)
|+|+|+|+||++|++|++||++||+| |+||++++++++|+|+++++ .++|||+|+++ |.+|+|++.++|||
T Consensus 1 M~i~i~g~~i~~t~al~~~v~~kl~k-L~k~~~~i~~~~V~l~~e~~-------~~~~ei~i~~~-g~~l~a~~~~~d~y 71 (96)
T 3tqm_A 1 MHIQMTGQGVDISPALRELTEKKLHR-IQPCRDEISNIHIIFHINKL-------KKIVDANVKLP-GSTINAQAESDDMY 71 (96)
T ss_dssp CEEEEEEESSCCCHHHHHHHHHHHTT-CCSSGGGCCEEEEEEEEETT-------EEEEEEEEEET-TEEEEEEECCSCHH
T ss_pred CEEEEEEEcccCCHHHHHHHHHHHHH-HHHhcCCCeEEEEEEEEeCC-------ceEEEEEEEeC-CcEEEEEEecCCHH
Confidence 99999999999999999999999999 99999999999999999975 38999999999 67999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcc
Q 020955 179 ASIDLVSSIIQRKLRKIKEKESDHG 203 (319)
Q Consensus 179 aAID~A~dKLeRQLrK~KeKlkd~~ 203 (319)
+|||.|+|||+|||+|+|+|+++|+
T Consensus 72 ~Aid~a~dklerqL~k~k~k~~~h~ 96 (96)
T 3tqm_A 72 KTVDLLMHKLETQLSKYKAKKGDHR 96 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999874
No 7
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=99.95 E-value=2.4e-28 Score=198.01 Aligned_cols=98 Identities=29% Similarity=0.430 Sum_probs=91.3
Q ss_pred eEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHH
Q 020955 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178 (319)
Q Consensus 99 MkI~ItgRnvelTdaLreyIeeKl~K~L~Ky~~~i~~a~V~Ls~e~~~~~kg~~~~~vEItV~~~~g~~IrAee~a~D~Y 178 (319)
|+|+|+|+||++|++|++||++||+| |+||++++++++|+|+.+++. ++|||+|+++ |.+|+|++.++|||
T Consensus 1 M~i~I~g~~ie~t~alr~~ve~Kl~k-L~k~~d~i~~~~V~l~~e~~~-------~~~eitv~~~-G~~l~ae~~~~d~y 71 (101)
T 3v26_X 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDATLHVN-GGEIHASAEGQDMY 71 (101)
T ss_dssp CCEEEECSSSCCCHHHHHHHHHHHHH-HHTTCSCCCCEEEEEEECSSC-------EEEEEEECST-TCCEEEEECCSSSS
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHH-HHhhcCCCeEEEEEEEEcCCC-------EEEEEEEEcC-CceEEEEEecCCHH
Confidence 89999999999999999999999999 999999999999999999753 8999999999 56999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccCC
Q 020955 179 ASIDLVSSIIQRKLRKIKEKESDHGRH 205 (319)
Q Consensus 179 aAID~A~dKLeRQLrK~KeKlkd~~r~ 205 (319)
+|||.|+|||+|||+|+|+|++.|+.+
T Consensus 72 aAID~a~dkLerQLrK~K~k~~~~~~~ 98 (101)
T 3v26_X 72 AAIDGLIDKLARQLTKHKDKLKQHHHH 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999987643
No 8
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB: 3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=99.95 E-value=1.5e-27 Score=198.81 Aligned_cols=98 Identities=22% Similarity=0.355 Sum_probs=91.2
Q ss_pred eEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHH
Q 020955 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178 (319)
Q Consensus 99 MkI~ItgRnvelTdaLreyIeeKl~K~L~Ky~~~i~~a~V~Ls~e~~~~~kg~~~~~vEItV~~~~g~~IrAee~a~D~Y 178 (319)
|+|+|+||||++|++|++||++||+| |+||++++++++|+|+++++. ++|||+|+++ |.+|+|++.++|||
T Consensus 1 M~i~I~g~~ievt~alr~~ve~Kl~k-L~k~~d~i~~~~V~ls~e~~~-------~~veiti~~~-G~~l~ae~~~~D~y 71 (119)
T 3v2c_Y 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQG-------FVADATINTP-NGVLVASGKHEDMY 71 (119)
T ss_dssp -CCEEEEETSCCCHHHHHHHHHHGGG-GGGGCCCCEEEEEEEECCSSC-------EEEEEEEEET-TEEEEEEEEESSHH
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHH-HHHhcCCCeEEEEEEEEeCCC-------EEEEEEEEcC-CceEEEEEcCCCHH
Confidence 89999999999999999999999999 999999999999999998753 8999999999 57999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccCC
Q 020955 179 ASIDLVSSIIQRKLRKIKEKESDHGRH 205 (319)
Q Consensus 179 aAID~A~dKLeRQLrK~KeKlkd~~r~ 205 (319)
+|||.|+|||+|||+|+|+|+++|++.
T Consensus 72 aAID~a~dkLerQLrK~K~K~~~~~~~ 98 (119)
T 3v2c_Y 72 TAINELINKLERQLNKLQHKGEARRAA 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999988653
No 9
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=99.95 E-value=8.2e-28 Score=196.40 Aligned_cols=97 Identities=22% Similarity=0.320 Sum_probs=92.2
Q ss_pred eEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHH
Q 020955 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178 (319)
Q Consensus 99 MkI~ItgRnvelTdaLreyIeeKl~K~L~Ky~~~i~~a~V~Ls~e~~~~~kg~~~~~vEItV~~~~g~~IrAee~a~D~Y 178 (319)
|+|+|+|+||++|++|++||++||+| |+||++++++++|+|+++++ .++|||+|+++ |..|+|++.++|||
T Consensus 1 M~i~I~g~~i~~t~alr~~v~~kl~k-L~r~~~~i~~~~V~l~~e~~-------~~~~ei~i~~~-g~~l~a~~~~~d~y 71 (107)
T 1imu_A 1 MTLNITSKQMDITPAIREHLEERLAK-LGKWQTQLISPHFVLNKVPN-------GFSVEASIGTP-LGNLLASATSDDMY 71 (107)
T ss_dssp CCCEECCSSSCCCHHHHHHHHHHHHH-HHTSSCCCSSCEEEEEEETT-------EEEEEEEECCT-TCCEEEEEEESCHH
T ss_pred CEEEEEEecCcCCHHHHHHHHHHHHH-HHHhcCCCcEEEEEEEEcCC-------ceEEEEEEEcC-CCEEEEEEecCCHH
Confidence 89999999999999999999999999 99999999999999999974 38999999999 56899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccC
Q 020955 179 ASIDLVSSIIQRKLRKIKEKESDHGR 204 (319)
Q Consensus 179 aAID~A~dKLeRQLrK~KeKlkd~~r 204 (319)
+|||.|+|||+|||+|||+|+++|++
T Consensus 72 ~AiD~a~dkLerqLrk~k~K~~~~~~ 97 (107)
T 1imu_A 72 KAINEVEEKLERQLNKLQHKSESRRA 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999988764
No 10
>1pu1_A Hypothetical protein MTH677; structural genomics, alpha and beta protein (A+B), unknown function; NMR {Methanothermobacterthermautotrophicus} SCOP: d.266.1.1
Probab=81.65 E-value=2.9 Score=32.89 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=36.7
Q ss_pred CceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHHHHHHHHHHHHHHHHHHHHh
Q 020955 132 LVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE 197 (319)
Q Consensus 132 ~i~~a~V~Ls~e~~~~~kg~~~~~vEItV~~~~g~~IrAee~a~D~YaAID~A~dKLeRQLrK~Ke 197 (319)
.+...+|.+....+. .-...++|-|.++ .... ..-.=+..||+.|..++++.|+.|++
T Consensus 37 Ei~Dldi~v~v~~~~----~Ldvdvdv~l~~d--~lsk--~D~~ivdeAi~~AY~~ie~yl~d~r~ 94 (94)
T 1pu1_A 37 EIVDIDITVLVEYTD----ELKVDISAELYLD--ELSD--ADPGIVDEAVDAAYRSLESFLDGFRE 94 (94)
T ss_dssp TEEEEEEEEEEEESS----SEEEEEEEEEEEC--TTCC--CCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhcceeEEEEccCC----ceeeEEEEEEEeC--chhh--cCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 466677777666542 1223455555554 2233 33366788999999999999997763
No 11
>3ueb_A Putative uncharacterized protein; alpha and beta protein (A+B), unknown function; 1.98A {Thermococcus onnurineus}
Probab=71.11 E-value=7.8 Score=30.58 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=34.0
Q ss_pred CceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHHHHHHHHHHHHHHHHHHHHhH
Q 020955 132 LVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK 198 (319)
Q Consensus 132 ~i~~a~V~Ls~e~~~~~kg~~~~~vEItV~~~~g~~IrAee~a~D~YaAID~A~dKLeRQLrK~KeK 198 (319)
.+.+++|+.....+. .-....||-+.+| ++.--....=+..|++.|.++++|.||+...+
T Consensus 46 eVkDiEVT~riNr~e----TLdLElEvYlEVP---iFVkVDVe~lideA~e~AYe~VE~~Lreia~~ 105 (110)
T 3ueb_A 46 EVKDIEVTMRINREE----TLDLEIEVYLEVP---IFVKVDVDKLIDEAVERAYEIVERKLREIANE 105 (110)
T ss_dssp GCSEEEEEEEECTTT----SSEEEEEEEEECC---TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccceeEEEeecCCC----ccceEEEEEEEee---eEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355667766655432 1223445545554 22222233445678888888888888877654
No 12
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=65.84 E-value=1.3 Score=42.15 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=22.5
Q ss_pred CCCceEEEEeeccCHHHHHHHHHHHHHHH-HHHHH
Q 020955 163 KKHGVVRAEEDAETVYASIDLVSSIIQRK-LRKIK 196 (319)
Q Consensus 163 ~~g~~IrAee~a~D~YaAID~A~dKLeRQ-LrK~K 196 (319)
+.+..++.+-.=+++-..+.....++..- |+-+.
T Consensus 139 ~~~Paar~kv~w~~lP~~~k~~~~k~y~~~i~~~a 173 (319)
T 1lsh_B 139 QSHPAARVDIKWGRLPSSLQRAKNALLENGAPVIA 173 (319)
T ss_dssp SSSEEEEEEEEECCCCHHHHHHHHHHHHTHHHHHH
T ss_pred cCCccEEEEEEeccCCHHHHHHHHHHHhcccchhh
Confidence 33456777777777767677777777776 66443
No 13
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=62.79 E-value=64 Score=26.59 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=27.9
Q ss_pred EEEcCCCceEEEEeeccCHHHHHHHHHHHHHHHHHHHHhHh
Q 020955 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE 199 (319)
Q Consensus 159 tV~~~~g~~IrAee~a~D~YaAID~A~dKLeRQLrK~KeKl 199 (319)
+|...+.++....-+++|+. |+..|+..+-||-||+..-.
T Consensus 76 ~imgsgsgvm~i~f~gddle-a~ekalkemirqarkfagtv 115 (170)
T 4hhu_A 76 QIMGSGSGVMVIVFEGDDLE-ALEKALKEMIRQARKFAGTV 115 (170)
T ss_dssp EEECTTCCEEEEEEECSCHH-HHHHHHHHHHHHHHHTTCEE
T ss_pred EEEeCCceEEEEEEecCcHH-HHHHHHHHHHHHHHhhcceE
Confidence 33433334666666788885 49999999999998876543
No 14
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=45.40 E-value=4.4 Score=38.36 Aligned_cols=38 Identities=5% Similarity=0.204 Sum_probs=22.1
Q ss_pred cceeeecCCCCCceEEEEEeee---------------cccCHHHHHHHHHHHHH
Q 020955 86 LPVRMSWDGPLSSVKLIIQGKN---------------LELTDTVKNHVEEKVGK 124 (319)
Q Consensus 86 ~~~~~~~~~~~~~MkI~ItgRn---------------velTdaLreyIeeKl~K 124 (319)
+-.++.|+..-..-+|.|+|.- =+|+..++.|..+ +.+
T Consensus 114 v~a~l~wG~eCq~y~i~i~getg~l~~~Paar~kv~w~~lP~~~k~~~~k-~y~ 166 (319)
T 1lsh_B 114 AKAAIGWGKNCQQYRAMLEASTGNLQSHPAARVDIKWGRLPSSLQRAKNA-LLE 166 (319)
T ss_dssp EEEEEEESSSSCSEEEEEEEEEEESSSSEEEEEEEEECCCCHHHHHHHHH-HHH
T ss_pred EEEEEEeCCcCcceEEEEEEEeecccCCccEEEEEEeccCCHHHHHHHHH-HHh
Confidence 3478889887543344443221 1367888887755 545
No 15
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=39.57 E-value=67 Score=27.60 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCC-ceEEEEeeccCHHHHHHHHHHHHHH
Q 020955 112 DTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH-GVVRAEEDAETVYASIDLVSSIIQR 190 (319)
Q Consensus 112 daLreyIeeKl~K~L~Ky~~~i~~a~V~Ls~e~~~~~kg~~~~~vEItV~~~~g-~~IrAee~a~D~YaAID~A~dKLeR 190 (319)
..+.+.+.+||...+. +.+..++|+|.-+.-. .++|.|.+.+| ..+.-.........+|+.++.+|+.
T Consensus 68 ~~w~qqL~qqI~~~~~---~g~q~a~IrL~PpeLG--------~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe 136 (169)
T 2rrl_A 68 HEWQQTFSQQVMLFTR---QGQQSAQLRLHPEELG--------QVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRT 136 (169)
T ss_dssp HHHHHHHHHHHHHHHH---HTCCEEEECCSSGGGC--------CEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CCceEEEEEECccccC--------cEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 3455556666655222 3467888888765421 35666655533 2344445566666666666666655
Q ss_pred HHH
Q 020955 191 KLR 193 (319)
Q Consensus 191 QLr 193 (319)
.|.
T Consensus 137 ~La 139 (169)
T 2rrl_A 137 QLA 139 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 16
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=38.94 E-value=1.2e+02 Score=23.51 Aligned_cols=58 Identities=10% Similarity=0.152 Sum_probs=38.6
Q ss_pred eEEEEEeeec--ccCHHHHHHHHHHHHHHHhhhCC-CceEEEEEEEeecCcCCCCCceeEEEEEEEcC
Q 020955 99 VKLIIQGKNL--ELTDTVKNHVEEKVGKAVLKHSH-LVREVDVRLSVRGGEFGKGPRIRRCEVTLFTK 163 (319)
Q Consensus 99 MkI~ItgRnv--elTdaLreyIeeKl~K~L~Ky~~-~i~~a~V~Ls~e~~~~~kg~~~~~vEItV~~~ 163 (319)
++|.+..... .+++.+-+.+.+-|-.++.||.. +...++|.|+.+.+ .-..+++|.++
T Consensus 22 LqlILahdR~~~~~~pd~l~~lk~eIl~VIsKYv~Id~~~v~V~l~~~~~-------~~vL~~nIpl~ 82 (95)
T 2kxo_A 22 LQIIIAQERAQEGQTPDYLPTLRKALMEVLSKYVNVSLDNIRISQEKQDG-------MDVLELNITLP 82 (95)
T ss_dssp EEEEEEEEECSSCCCCCSHHHHHHHHHHHHHHHSCCCTTSEEEEEEEETT-------EEEEEEEEEEC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHheecchhheEEEEEeCCC-------cEEEEEEEEeC
Confidence 6666655444 57777777888888788999987 23467777776543 24566666665
No 17
>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A
Probab=38.56 E-value=86 Score=23.65 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=35.3
Q ss_pred eEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEE-EeecCcCCCCCceeEEEEEEEcC
Q 020955 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRL-SVRGGEFGKGPRIRRCEVTLFTK 163 (319)
Q Consensus 99 MkI~ItgRnvelTdaLreyIeeKl~K~L~Ky~~~i~~a~V~L-s~e~~~~~kg~~~~~vEItV~~~ 163 (319)
+++.+.... ..++.+-+.+.+-|-.++.||.+ +..++|.+ ..++ ..-..|++|.+|
T Consensus 23 LqliLa~dR-~~~p~~l~~lk~eil~VIskYv~-id~v~V~l~e~~~-------~~~vLe~nI~lp 79 (80)
T 3ku7_A 23 LKLILAKER-TLNLPYMEEMRKEIIAVIQKYTK-SSDIHFKTLDSNQ-------SVETIEVEIILP 79 (80)
T ss_dssp EEEEEEEES-SCCCTTHHHHHHHHHHHHHHHHC-CCEEEEECC---C-------CEEEEEEEEECC
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHcC-ccceEEEEEecCC-------CEEEEEEEeecC
Confidence 666655544 35666777777777778999987 56666666 3322 245677777765
No 18
>3be3_A Uncharacterized protein; PFAM DUF1653, PSI-2, structural genomics, protein structure initiative; 2.04A {Bordetella bronchiseptica RB50}
Probab=35.83 E-value=24 Score=27.57 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.5
Q ss_pred eeCCCCceeEEEEecCCcEE---EEEeC
Q 020955 272 RNEETGEINIVYKRKAGGYG---VIIPK 296 (319)
Q Consensus 272 ~N~eTg~vnVVYRRkDG~YG---LIeP~ 296 (319)
+..||++.=||||---|++| |++|.
T Consensus 28 ~HSET~E~mVVYraLYgd~~~~lWvRPl 55 (91)
T 3be3_A 28 RADETDEVVVVYTRLYARAGLPMSTRLL 55 (91)
T ss_dssp EETTTTEEEEEEEESSCCSSCSEEEEEH
T ss_pred EEcCCCcEEEEEEeccCCCCccEEeccH
Confidence 68899999999999878888 89995
No 19
>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae}
Probab=28.84 E-value=2.6e+02 Score=25.27 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=48.9
Q ss_pred eeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeecc-CHHHHHHH
Q 020955 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE-TVYASIDL 183 (319)
Q Consensus 105 gRnvelTdaLreyIeeKl~K~L~Ky~~~i~~a~V~Ls~e~~~~~kg~~~~~vEItV~~~~g~~IrAee~a~-D~YaAID~ 183 (319)
+.++++=|++-+.|-+.+ +.+| +.+..++|.+.+..-.. ++....|.|.+.-..+..+.+=+.+- |-.+-|..
T Consensus 66 ~~~f~LiE~lA~~Ia~~l---l~~~-~~v~~V~V~v~Kp~api--~~~~~~v~Vei~R~~~~~~i~lGsN~gd~~~~l~~ 139 (270)
T 2cg8_A 66 ETSEDLIETVAYKLVERT---FESY-PLVQEMKLELKKPWAPV--HLSLDTCSVTIHRRKQRAFIALGSNMGDKQANLKQ 139 (270)
T ss_dssp SCCCSCHHHHHHHHHHHH---HHHC-TTCCEEEEEEEETTCSC--CSCCSCEEEEEEEECEEEEEEEEECSSSHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHH---HHhc-CCceEEEEEEeeccccc--cccccccccccccccceEEEecCCCCCCHHHHHHH
Confidence 445565555555555554 3344 67889999998865421 11223466655543344666777665 88888888
Q ss_pred HHHHHHH
Q 020955 184 VSSIIQR 190 (319)
Q Consensus 184 A~dKLeR 190 (319)
|++.|..
T Consensus 140 A~~~L~~ 146 (270)
T 2cg8_A 140 AIDKLRA 146 (270)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8887764
No 20
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=28.38 E-value=1.3e+02 Score=22.72 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=24.1
Q ss_pred eEEEEEe-eecccCHHHHHHHHHHHHHHHhhhCCCc-eEEEEEEE
Q 020955 99 VKLIIQG-KNLELTDTVKNHVEEKVGKAVLKHSHLV-REVDVRLS 141 (319)
Q Consensus 99 MkI~Itg-RnvelTdaLreyIeeKl~K~L~Ky~~~i-~~a~V~Ls 141 (319)
|+|+|+. |.-.+++...+-++..|.|-|.+.|++. ..++|...
T Consensus 1 MrVEi~~dK~~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~ 45 (81)
T 1ghh_A 1 MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYA 45 (81)
T ss_dssp CEEEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEE
T ss_pred CeEEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCceEEEeec
Confidence 7777776 4336665555555555555455566654 35555544
No 21
>2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
Probab=27.77 E-value=2e+02 Score=22.71 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=30.9
Q ss_pred EEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEee
Q 020955 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR 143 (319)
Q Consensus 103 ItgRnvelTdaLreyIeeKl~K~L~Ky~~~i~~a~V~Ls~e 143 (319)
+.+.++ +++++..|...+..+|.+|-+++.-.+|.+...
T Consensus 62 li~~~~--~~~~~~~i~~~i~~al~~~EPRi~~~~V~v~~~ 100 (134)
T 2ia7_A 62 RVFSVI--NTTTLGLIENEVKEALILWEPRIELLSVTASPR 100 (134)
T ss_dssp CCCSCC--CHHHHHHHHHHHHHHHHHHCTTEEEEEEEEECT
T ss_pred HhCCCC--CHHHHHHHHHHHHHHHHHhCCCeEEEEEEEeec
Confidence 334443 788888999998888999999998888888764
No 22
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=25.60 E-value=58 Score=28.56 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=8.5
Q ss_pred CCcceeeecCCCC
Q 020955 84 KPLPVRMSWDGPL 96 (319)
Q Consensus 84 ~~~~~~~~~~~~~ 96 (319)
..-+-+|.|....
T Consensus 198 ~~~~~~~d~~~~~ 210 (216)
T 2krg_A 198 SKRAPQMDWSKKN 210 (216)
T ss_dssp CCCCSCCCCSCCC
T ss_pred cccCcccCHHHHH
Confidence 3446789997653
No 23
>2j73_A Pullulanase; alpha-glucan binding, glucosyl- maltotriose, carbohydrate-binding module, hydrolase, glycosidase, beta-sandwich fold; HET: GLC; 1.4A {Thermotoga maritima} SCOP: b.3.1.3 PDB: 2j71_A* 2j72_A*
Probab=24.60 E-value=27 Score=27.19 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=13.1
Q ss_pred CCceeEEEEecCCcE
Q 020955 276 TGEINIVYKRKAGGY 290 (319)
Q Consensus 276 Tg~vnVVYRRkDG~Y 290 (319)
.+.+.|-|+|.||+|
T Consensus 3 ~~~v~ihY~r~dg~Y 17 (103)
T 2j73_A 3 ETTIVVHYHRYDGKY 17 (103)
T ss_dssp CEEEEEEEECTTCCC
T ss_pred CceEEEEEECCCCCc
Confidence 367899999999998
No 24
>3ge2_A Lipoprotein, putative; beta-barrel, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Streptococcus pneumoniae}
Probab=23.68 E-value=22 Score=29.35 Aligned_cols=7 Identities=14% Similarity=0.615 Sum_probs=3.1
Q ss_pred cCccccC
Q 020955 62 YNSSFFG 68 (319)
Q Consensus 62 ~~~~~~~ 68 (319)
|.-++-|
T Consensus 50 LDGTY~g 56 (130)
T 3ge2_A 50 IDGTYTG 56 (130)
T ss_dssp CCEEEEE
T ss_pred cCceEEc
Confidence 4444444
No 25
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=21.80 E-value=32 Score=27.49 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=19.3
Q ss_pred CCCcEEEEeeCCCCceeEEEEecCC
Q 020955 264 VDHDFYGFRNEETGEINIVYKRKAG 288 (319)
Q Consensus 264 lghdF~vF~N~eTg~vnVVYRRkDG 288 (319)
+|++=|+|+|. ||+|.|---.+.+
T Consensus 50 ~~~d~Y~F~D~-TG~I~VeId~~~w 73 (109)
T 1nnx_A 50 ISDDLYVFKDA-SGTINVDIDHKRW 73 (109)
T ss_dssp EETTEEEEEET-TEEEEEECCGGGS
T ss_pred eCCCeEEEECC-CccEEEEEChhhc
Confidence 48899999996 9999987655544
No 26
>3f6g_B Alpha-isopropylmalate synthase; licmsc, allosteric regulation, feedback inhibition, selectivity, specificity, transferase; 2.00A {Leptospira interrogans} PDB: 3f6h_A
Probab=20.88 E-value=1.7e+02 Score=23.35 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=27.7
Q ss_pred eEEEEEEEcCCCceEEEEeeccCHHHHHHHHHHHHH
Q 020955 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQ 189 (319)
Q Consensus 154 ~~vEItV~~~~g~~IrAee~a~D~YaAID~A~dKLe 189 (319)
-.+.|+|..+ |..+...+.+.-...|++.|+.++-
T Consensus 18 ~~a~v~l~~~-g~~~~~~a~GnGPVdA~~~Al~~~~ 52 (127)
T 3f6g_B 18 PHAQIELEYQ-GKIHKEISEGDGGYDAFMNALTKIT 52 (127)
T ss_dssp CEEEEEEEET-TEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred eEEEEEEEEC-CEEEEEEEEccCHHHHHHHHHHHHh
Confidence 3677788776 6788889999999888888877653
No 27
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=20.44 E-value=55 Score=20.10 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=9.8
Q ss_pred HHHHHHHHHhHhhhc
Q 020955 188 IQRKLRKIKEKESDH 202 (319)
Q Consensus 188 LeRQLrK~KeKlkd~ 202 (319)
|+++|||++.|++.+
T Consensus 2 lrkrlrkfrnkikek 16 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEK 16 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466777777666654
Done!