Query 020956
Match_columns 319
No_of_seqs 149 out of 1328
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3daa_A D-amino acid aminotrans 100.0 9.6E-65 3.3E-69 464.6 29.9 270 28-306 3-276 (277)
2 3u0g_A Putative branched-chain 100.0 3E-63 1E-67 463.9 32.7 276 27-310 30-317 (328)
3 4dqn_A Putative branched-chain 100.0 2.7E-63 9.3E-68 467.0 25.7 289 4-311 19-333 (345)
4 2eiy_A ILVE, branched-chain am 100.0 1.1E-61 3.9E-66 450.9 33.1 276 28-310 8-294 (308)
5 1iye_A Branched-chain amino ac 100.0 1.3E-61 4.3E-66 450.8 31.5 276 28-310 9-296 (309)
6 3lul_A 4-amino-4-deoxychorisma 100.0 1.5E-61 5.2E-66 442.4 31.4 263 27-308 5-269 (272)
7 1i2k_A 4-amino-4-deoxychorisma 100.0 9.3E-61 3.2E-65 436.8 30.7 260 28-303 2-266 (269)
8 2xpf_A 4-amino-4-deoxychorisma 100.0 1.3E-60 4.5E-65 440.3 30.1 264 27-307 23-291 (292)
9 3uzo_A Branched-chain-amino-ac 100.0 6.7E-61 2.3E-65 452.3 23.2 288 5-311 35-348 (358)
10 3sno_A Hypothetical aminotrans 100.0 3.5E-60 1.2E-64 440.9 25.9 262 26-305 15-313 (315)
11 3dth_A Branched-chain amino ac 100.0 1.7E-59 5.9E-64 443.8 26.6 288 5-311 39-361 (372)
12 2a1h_A Branched chain aminotra 100.0 2.4E-59 8.3E-64 443.9 26.9 289 5-312 34-358 (365)
13 2coi_A Branched chain aminotra 100.0 4.5E-59 1.5E-63 444.1 25.3 289 5-311 53-377 (386)
14 3dtg_A Branched-chain amino ac 100.0 9E-58 3.1E-62 433.7 26.0 290 4-311 38-361 (372)
15 3csw_A BCAT, putative branched 100.0 7.8E-57 2.7E-61 413.8 25.4 257 29-309 18-277 (285)
16 2zgi_A Putative 4-amino-4-deox 100.0 4.5E-53 1.5E-57 381.1 18.2 227 28-286 2-233 (246)
17 3qqm_A MLR3007 protein; struct 100.0 2.4E-46 8.2E-51 331.8 22.6 204 50-280 13-220 (221)
18 3ceb_A D-aminoacid aminotransf 100.0 5.5E-43 1.9E-47 304.4 17.2 189 50-275 2-194 (194)
19 2lqo_A Putative glutaredoxin R 33.7 29 0.00098 25.0 2.9 59 236-300 22-81 (92)
20 2r48_A Phosphotransferase syst 32.4 38 0.0013 25.3 3.4 82 218-304 8-97 (106)
21 2r4q_A Phosphotransferase syst 31.5 60 0.0021 24.2 4.4 81 218-303 8-96 (106)
22 2fz5_A Flavodoxin; alpha/beta 29.1 1.1E+02 0.0036 22.7 5.7 44 228-273 11-57 (137)
23 2kyr_A Fructose-like phosphotr 25.0 75 0.0026 23.9 3.9 46 224-272 17-70 (111)
24 2ww6_A Fibritin, T4 fibritin; 23.4 46 0.0016 18.3 1.7 21 198-218 1-21 (27)
25 5nul_A Flavodoxin; electron tr 23.0 1.2E+02 0.0039 22.7 4.9 45 228-274 10-57 (138)
26 2guz_B Mitochondrial import in 21.9 1.1E+02 0.0036 20.6 3.8 31 76-106 3-36 (65)
No 1
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=100.00 E-value=9.6e-65 Score=464.57 Aligned_cols=270 Identities=23% Similarity=0.357 Sum_probs=247.0
Q ss_pred cccCCeeeCCCCceeCCCCccccccceeeeeeeeeCCeecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC
Q 020956 28 SIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNC 107 (319)
Q Consensus 28 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~~~~~ 107 (319)
+|+||++++.+++.+++.||||+|||||||||++++|++|+|++|++||.+||++|+|+.|++.++|.+++.+++++++.
T Consensus 3 ~~~nG~~~~~~~~~i~~~d~g~~yGdgvFEtir~~~g~~f~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~li~~n~~ 82 (277)
T 3daa_A 3 TLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKNEL 82 (277)
T ss_dssp EEETTEEEEGGGCCBCTTBHHHHTCCEEEEEEEEETTEETTHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTC
T ss_pred EEECCEEeEhHHCeechhhhHHhcccEEEEEEEEECCEEcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 59999999999999999999999999999999999999999999999999999999999889999999999999999988
Q ss_pred CCceEEEEEeecCCCcccCCC-CCCccEEEEEEEeCCCc--ccCCCcEEEEeeeecCCCCCCCccccccHHHHHHHHHHH
Q 020956 108 RKGSLRYWLSAGVGDFQLSPV-GCHQSTFYVIVIQDDSP--FVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAE 184 (319)
Q Consensus 108 ~~~~iri~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~Kt~ny~~~~~a~~~A~ 184 (319)
.+++||+++++|.+.+++.++ .+..|++++++.|.+.+ .+.+|+++.+++.. ++.++++||+||+.+++++++|+
T Consensus 83 ~~~~lri~vtrG~~~r~~~~p~~~~~~~~~i~~~p~~~~~~~~~~gv~~~~~~~~--r~~~~~~Kt~nyl~~~la~~eA~ 160 (277)
T 3daa_A 83 NTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVEDI--RWLRCDIKSLNLLGAVLAKQEAH 160 (277)
T ss_dssp CSEEEEEEEESCBCSCCSSCCSSCCCCEEEEEEEECCCCHHHHHHCEEEEEEECC--CCSCTTSCBSCCHHHHHHHHHHH
T ss_pred CcEEEEEEEEecCCCcCCCCCCCCCCcEEEEEEEECCCChHHHhCCeEEEEecCc--cccCCCcchhhhHHHHHHHHHHH
Confidence 899999999999776655543 44578899888887642 23579999887643 35678999999999999999999
Q ss_pred HcCCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCC-CCcccHHHHHHHHHHHhhhhCCccceEEEEeeCHHHHhcc
Q 020956 185 ETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKA 263 (319)
Q Consensus 185 ~~g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~-~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i~~~dL~~a 263 (319)
++|+||+||+| +|+|+|++++|| |+++||+|+|||++ ++|+||||+.|+++|+++ |+ +|+|+.++++||.+|
T Consensus 161 ~~g~~e~l~l~-~g~v~E~~~sNi-f~~~~~~l~TP~~~~~iL~GitR~~vl~~~~~~---g~--~v~e~~i~~~el~~a 233 (277)
T 3daa_A 161 EKGCYEAILHR-NNTVTEGSSSNV-FGIKDGILYTHPANNMILKGITRDVVIACANEI---NM--PVKEIPFTTHEALKM 233 (277)
T ss_dssp HTTCSEEEEEE-TTEEEEETTBEE-EEEETTEEEECCSSTTSCCCHHHHHHHHHHHHT---TC--CEECCCCBHHHHHTC
T ss_pred HCCCCEEEEEc-CCEEEEcCceEE-EEEECCEEECCCCcCCCCccHHHHHHHHHHHHc---CC--eEEEEeCCHHHHHhc
Confidence 99999999997 899999999999 55699999999986 799999999999999998 87 999999999999999
Q ss_pred ceeeeecccCceEEEEEECCEEeCCCCccHHHHHHHHHHHHHH
Q 020956 264 EEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDM 306 (319)
Q Consensus 264 devfl~ns~~gi~pV~~id~~~~~~g~~g~~~~~L~~~~~~~i 306 (319)
||+|+|||++||+||.+||++.+++|++||+|++|+++|.+.|
T Consensus 234 devf~~ns~~~i~pV~~id~~~~~~g~~g~~t~~L~~~~~~~i 276 (277)
T 3daa_A 234 DELFVTSTTSEITPVIEIDGKLIRDGKVGEWTRKLQKQFETKI 276 (277)
T ss_dssp SEEEEEETTTEEEEEEEETTEESTTSSCCHHHHHHHHHHHTTC
T ss_pred CeeeeecChhhEEEEEEECCEECCCCCcCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998543
No 2
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=100.00 E-value=3e-63 Score=463.94 Aligned_cols=276 Identities=26% Similarity=0.399 Sum_probs=250.9
Q ss_pred ecccCCeeeCCCCceeCCCCccccccceeeeeeeeeC---C--eecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 020956 27 SSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICD---G--YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101 (319)
Q Consensus 27 ~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~---G--~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l 101 (319)
.+|+||++++.+++.|++.||||+||||||||+++++ | ++|+|++|++||.+||++|+|+.|++.++|.+++.++
T Consensus 30 ~~w~nG~~vp~~~~~i~~~drg~~yGdgvFEtir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l 109 (328)
T 3u0g_A 30 KIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDV 109 (328)
T ss_dssp EEEETTEEEEGGGCEEESSCHHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred EEEECCEEeehHhCccCccchHHhcCceEEEEEEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 3699999999999999999999999999999999998 9 9999999999999999999999889999999999999
Q ss_pred HHHcCCCCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCc----ccCCCcEEEEeeeecCCC--CCCCcc-ccccH
Q 020956 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSP----FVSKGVKVITSSIPIKPP--QFGTVK-SVNYL 174 (319)
Q Consensus 102 ~~~~~~~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~l~~~~~~~~~~--~~~~~K-t~ny~ 174 (319)
+++++..+++||+++++|.+.+++.|..+ .+++++.+.|.+.. ...+|+++.++++.|..+ .++++| ++||+
T Consensus 110 v~~n~~~~~~iR~~vtrg~~~~g~~p~~~-~~~~~i~~~p~~~~~~~~~~~~gv~l~~~~~~R~~~~~~~~~~K~t~nyl 188 (328)
T 3u0g_A 110 VRENKLESCYLRPIIWIGSEKLGVSAKGN-TIHVAIAAWPWGAYLGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYV 188 (328)
T ss_dssp HHHTTCSSEEEEEEEEECSSCCSTTCCCC-CEEEEEEEEECC----HHHHHHCEEEEECSSCCCCTTTSCTTSCBGGGHH
T ss_pred HHhcCCCCeEEEEEEEecCCCCCcCCCCC-CcEEEEEEEEcCCCCChhhhcCCEEEEEeeeeecCCCCcccchhhhhhhH
Confidence 99998888999999999988777765542 47788878776432 134799999998766532 378999 89999
Q ss_pred HHHHHHHHHHHcCCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCCCCcccHHHHHHHHHHHhhhhCCccceEEEEe
Q 020956 175 PNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGN 254 (319)
Q Consensus 175 ~~~~a~~~A~~~g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~ 254 (319)
.+++|+++|+++|+||+||+|++|+|+|++++|| |+++||+|+||+++.+|+||||+.||++|+++ |+ +|+|+.
T Consensus 189 ~~vla~~eA~~~G~~e~l~ld~~g~v~E~~~sNi-f~v~~g~l~TP~~~~iL~GitR~~vl~~a~~~---g~--~v~e~~ 262 (328)
T 3u0g_A 189 NSILANQEATADGYDEALLLDVDGYVSEGSGENF-FLVNRGKLYTPDLASCLDGITRDTVITLAKEA---GI--EVIEKR 262 (328)
T ss_dssp HHHHHHHHHHHTTCSEEEEECTTSCEEEESSSEE-EEEETTEEEECCSSSSCCCHHHHHHHHHHHHT---TC--CEEECC
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCcEEEcCceeE-EEEECCEEEeCCccccchHHHHHHHHHHHHHc---CC--eEEEEe
Confidence 9999999999999999999999999999999999 55699999999996699999999999999998 87 999999
Q ss_pred eCHHHHhccceeeeecccCceEEEEEECCEEeCCCCccHHHHHHHHHHHHHHHcCC
Q 020956 255 VTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGP 310 (319)
Q Consensus 255 i~~~dL~~adevfl~ns~~gi~pV~~id~~~~~~g~~g~~~~~L~~~~~~~i~~~~ 310 (319)
++++||.+|||+|+|||++||+||.+||++.+++|++||+|++|+++|. .++.|.
T Consensus 263 i~~~eL~~adevf~tns~~~v~PV~~Id~~~~~~g~~g~vt~~L~~~~~-~~~~g~ 317 (328)
T 3u0g_A 263 ITRDEVYTADEAFFTGTAAEVTPIRELDNRTIGGGARGPITEKLQSAFF-DVVNGK 317 (328)
T ss_dssp CCHHHHHTCSEEEEEETTTEEEEEEEETTEECTTSSCCHHHHHHHHHHH-HHHTTC
T ss_pred CCHHHHhhCCEEEEEcchhhEEEEEEECCEECCCCCCCHHHHHHHHHHH-HHHcCC
Confidence 9999999999999999999999999999999999999999999999998 666664
No 3
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=100.00 E-value=2.7e-63 Score=467.00 Aligned_cols=289 Identities=20% Similarity=0.191 Sum_probs=255.1
Q ss_pred HHHHHHHhcccCcccchhhhhheecccCCeeeCCCCceeCCCCccccccceeeeeeeeeCCe-----ecChHHHHHHHHH
Q 020956 4 KAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGY-----LYELDQHLDRIIR 78 (319)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~G~-----~~~l~~Hl~RL~~ 78 (319)
.|||||....|.... |+||++++.+++.|++.||||+||||||||||+++|+ +|+|++|++||.+
T Consensus 19 ~~td~m~~~~~~~~~----------w~nG~~vp~~~~~i~~~d~gl~yGdgvFE~ir~~~g~dg~~~~f~l~~Hl~RL~~ 88 (345)
T 4dqn_A 19 HKLPFRYISYYKDGK----------WDDGKLTEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAERLQR 88 (345)
T ss_dssp CCCSCEEEEEEETTE----------ECCCEEESCCSCCCCTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHH
T ss_pred cccCceEEEEecCCc----------EECCEEeEhhhcccCccccccccccEEEEEEEEEeCCCCcccccCHHHHHHHHHH
Confidence 368888888884432 8999999999999999999999999999999999886 9999999999999
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcCC--------CCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCc--ccC
Q 020956 79 SASMAKIQLPFDRKSLRRILIQTVSASNC--------RKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSP--FVS 148 (319)
Q Consensus 79 Sa~~l~i~~p~~~~~l~~~i~~l~~~~~~--------~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 148 (319)
||++|+|+ +++.++|.+++.+++++++. .+++||++++++.+.+++.|+. .+++++++.|.+.. ...
T Consensus 89 Sa~~L~i~-~~~~~~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~g~~p~~--~~~~~i~~~p~~~~~~~~~ 165 (345)
T 4dqn_A 89 TADRLLMP-QVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVHPAD--EYIFTIFAMPVGNYFKGGL 165 (345)
T ss_dssp HHHHTTCC-CCCHHHHHHHHHHHHHHTGGGSCCTTSSCEEEEEEEEEEESCCCSSCCCS--EEEEEEEEEEECCSCTTSC
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEeCCCccCCCCCC--CeEEEEEEEECccccccCC
Confidence 99999998 78999999999999998864 3569999999987777776643 67888888775432 135
Q ss_pred CCcEEEEee-eecC-CCCCCCccc-cccHHHHHHHHHHHHcCCcEEEEEcC--CCcEEEeccceEEEEEeCcEEEcCCCC
Q 020956 149 KGVKVITSS-IPIK-PPQFGTVKS-VNYLPNVLSKMEAEETGAFAAIWLDG--EGFIAEGPNMNVAFVTKERLLLMPQFD 223 (319)
Q Consensus 149 ~g~~l~~~~-~~~~-~~~~~~~Kt-~ny~~~~~a~~~A~~~g~dd~l~ld~--~g~v~E~~~sNvffv~~~~~l~TP~~~ 223 (319)
+|+++.+++ +.|. ++.++++|+ +||+.+++|+++|+++|+||+||+|. +|+|+|++++||||++++|+|+||+..
T Consensus 166 ~gv~l~~~~~~~R~~~~~~~~~Kt~~nyl~~vla~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~g~l~TP~~~ 245 (345)
T 4dqn_A 166 APTNFLIQDDYDRAAPHGTGAAKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITPLSP 245 (345)
T ss_dssp CCEEEEECTTCCSSCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSCEEEECTTTSCBEEEETTEEEEEEETTCEEEECCCT
T ss_pred CCEEEEEccceEecCCCccccccccccCHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEcCCceEEEEecCCEEEeCCCC
Confidence 799999987 5664 456799998 99999999999999999999999998 699999999999554489999999933
Q ss_pred CCcccHHHHHHHHHHHh-hhhCCccceEEEEeeCHHHHhccceeeeecccCceEEEEEECCE----EeCCC-CccHHHHH
Q 020956 224 KILSGCTAKRVLTLAKA-LVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQ----VIGNG-KEGPIAQA 297 (319)
Q Consensus 224 ~iL~GitR~~vl~~~~~-~~~~g~~~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~id~~----~~~~g-~~g~~~~~ 297 (319)
++|+||||+.||++|++ + |+ +|+|+.++++||.+|||+|+|||++||+||.+||++ .+++| ++||+|++
T Consensus 246 ~iL~GitR~~vl~la~~~~---g~--~v~e~~i~~~el~~adevf~t~t~~~i~PV~~Id~~~~~~~i~~~~~~Gpvt~~ 320 (345)
T 4dqn_A 246 SILPSVTKYSLLYLAEHRF---GM--KAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDFHVFYSETEVGPVTHK 320 (345)
T ss_dssp TSCCCHHHHHHHHHHHHTT---CC--EEEECCCBTTCGGGEEEEEEEETTTEEEEEEEEEETTEEEESSCSSSCCHHHHH
T ss_pred CccHHHHHHHHHHHHHhcc---CC--eEEEEeCCHHHHHhhhHHhhhcchhHEEEEEEECcccceeeeCCCCCcCHHHHH
Confidence 89999999999999999 8 87 999999999999999999999999999999999988 88765 69999999
Q ss_pred HHHHHHHHHHcCCC
Q 020956 298 LLDLILEDMQSGPP 311 (319)
Q Consensus 298 L~~~~~~~i~~~~~ 311 (319)
|+++|. .++.|..
T Consensus 321 L~~~~~-~i~~g~~ 333 (345)
T 4dqn_A 321 LYDELT-GIQFGDV 333 (345)
T ss_dssp HHHHHH-HHHTTSS
T ss_pred HHHHHH-HHHcCCC
Confidence 999998 8887854
No 4
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=100.00 E-value=1.1e-61 Score=450.90 Aligned_cols=276 Identities=27% Similarity=0.408 Sum_probs=247.5
Q ss_pred cccCCeeeCCCCceeCCCCccccccceeeeeeeeeCC----eecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 020956 28 SIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDG----YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVS 103 (319)
Q Consensus 28 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~G----~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~ 103 (319)
+|+||++++.+++.+++.||||+||||+||||++++| ++|+|++|++||.+||+.|+++.|++.++|.+.+.++++
T Consensus 8 ~~~nG~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~g~~g~~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~ 87 (308)
T 2eiy_A 8 IWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVR 87 (308)
T ss_dssp EEETTEEECGGGCCCCTTCHHHHHCCEEECCEEEECCTTSCEEETHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH
T ss_pred EEECCEEeEhHHCccCccchHhhhcceEEEEEEEECCCCcccccCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999 999999999999999999999988999999999999999
Q ss_pred HcCCCCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCc--c--cCCCcEEEEeeeecCCC--CCCCccccc-cHHH
Q 020956 104 ASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSP--F--VSKGVKVITSSIPIKPP--QFGTVKSVN-YLPN 176 (319)
Q Consensus 104 ~~~~~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~g~~l~~~~~~~~~~--~~~~~Kt~n-y~~~ 176 (319)
.++..+++||+++++|.+.+++.|.....+++++.+.|.+.. . ..+|+++.++++.|..+ .++++|++| |+.+
T Consensus 88 ~~~~~~~~iR~~v~~g~~~~~~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~Kt~~ny~~~ 167 (308)
T 2eiy_A 88 RNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSSWARFPANVMPGKAKVGGNYVNS 167 (308)
T ss_dssp HTTCSSEEEEEEEECCSSCCSSCCGGGCSCEEEEEEEEC--------CCSCEEEEECSSCBCCTTTSCTTSCBGGGHHHH
T ss_pred hCCCCcEEEEEEEEecCCccCcCCCCCCCeEEEEEEEEcCccCCcccccCCeEEEEecceecCCCCcCcceehhhhHHHH
Confidence 887778999999999977777665433467888887776531 1 25799999998766433 468999988 9999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCCCCcccHHHHHHHHHHHhhhhCCccceEEEEeeC
Q 020956 177 VLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVT 256 (319)
Q Consensus 177 ~~a~~~A~~~g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i~ 256 (319)
++++++|+++|+||+||+|++|+|+|++++|| |+++||+|+||+++.+|+||||+.||++|+++ |+ +|+|+.++
T Consensus 168 ~la~~~A~~~G~de~l~ld~~G~V~Egs~sNi-f~v~~g~l~TP~~~~iL~GitR~~ll~~a~~~---g~--~v~E~~i~ 241 (308)
T 2eiy_A 168 ALAKMEAVAAGADEALLLDEEGYVAEGSGENL-FFVRDGVIYALEHSVNLEGITRDSVIRIAKDL---GY--EVQVVRAT 241 (308)
T ss_dssp HHHHHHHHHTTCSEEEEEBTTSSEEEESSCEE-EEEETTEEEEECCTTSCCCHHHHHHHHHHHHT---TC--CEEEECCC
T ss_pred HHHHHHHHHcCCCEEEEECCCCeEEEcCceEE-EEEECCEEEeCCcCCCCchHHHHHHHHHHHHC---CC--eEEEEeCC
Confidence 99999999999999999999999999999999 55699999999985599999999999999998 87 99999999
Q ss_pred HHHHhccceeeeecccCceEEEEEECCEEeCCCCccHHHHHHHHHHHHHHHcCC
Q 020956 257 VEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGP 310 (319)
Q Consensus 257 ~~dL~~adevfl~ns~~gi~pV~~id~~~~~~g~~g~~~~~L~~~~~~~i~~~~ 310 (319)
++||.+|||+|+|||++||+||.+||++.++.|++||+|++|+++|. .++.+.
T Consensus 242 ~~dL~~adevfltns~~gv~pV~~id~~~~~~g~~g~~~~~l~~~~~-~~~~~~ 294 (308)
T 2eiy_A 242 RDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYL-EAVTGR 294 (308)
T ss_dssp HHHHHTCSEEEEEETTTEEEEEEEETTEECTTSSCCHHHHHHHHHHH-HHHTTC
T ss_pred HHHHhhCCEEEEccCcceEEEEEEEcCEECCCCCCCHHHHHHHHHHH-HHHcCC
Confidence 99999999999999999999999999999998889999999999998 555553
No 5
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=100.00 E-value=1.3e-61 Score=450.83 Aligned_cols=276 Identities=22% Similarity=0.359 Sum_probs=248.6
Q ss_pred cccCCeeeCCCCceeCCCCccccccceeeeeeeee---CC-eecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 020956 28 SIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAIC---DG-YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVS 103 (319)
Q Consensus 28 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~---~G-~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~ 103 (319)
+|+||++++.+++.+++.||||+||||+||||+++ +| ++|+|++|++||.+||+.|+++.|++.+++.+.+.++++
T Consensus 9 ~~~ng~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~~~~G~~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~~~~ 88 (309)
T 1iye_A 9 IWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIR 88 (309)
T ss_dssp EEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSSEEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred EEECCEEEEhHHcccCccchHHhccceeEEEEEEEECCCCcEEcCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 99 999999999999999999999988999999999999999
Q ss_pred HcCCCCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCcc----cCCCcEEEEeeeecCCC--CCCCccc-cccHHH
Q 020956 104 ASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF----VSKGVKVITSSIPIKPP--QFGTVKS-VNYLPN 176 (319)
Q Consensus 104 ~~~~~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~l~~~~~~~~~~--~~~~~Kt-~ny~~~ 176 (319)
.++..+++||+++++|.+.+++.|+....+++++.+.|.+... ..+|+++.++++.|..+ .++++|+ .||+.+
T Consensus 89 ~~~~~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~~~~r~~~~~~~~~~K~~~ny~~~ 168 (309)
T 1iye_A 89 KNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSS 168 (309)
T ss_dssp HTTCSSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEECSSCCCCTTTSCTTSCBGGGHHHH
T ss_pred hcCCCCEEEEEEEEeCCCccCCCCCCCCCcEEEEEEEEcCccCCcccccCCeEEEEeeeeccCCCCCCccccchhhhHHH
Confidence 8877789999999999777777654334677887777754321 24699999988666532 3589997 699999
Q ss_pred HHHHHHHHHcCCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCC-CCcccHHHHHHHHHHHhhhhCCccceEEEEee
Q 020956 177 VLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNV 255 (319)
Q Consensus 177 ~~a~~~A~~~g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~-~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i 255 (319)
++++++|+++|+||+||+|++|+|+|++++|| |+++||+|+||+++ ++|+||||+.||++|+++ |+ +|+|+.+
T Consensus 169 ~la~~~A~~~G~de~l~ld~~G~V~Egs~sNi-f~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~~---g~--~v~E~~i 242 (309)
T 1iye_A 169 LLVGSEARRHGYQEGIALDVNGYISEGAGENL-FEVKDGVLFTPPFTSSALPGITRDAIIKLAKEL---GI--EVREQVL 242 (309)
T ss_dssp HHHHHHHHHTTCSEEEEECTTSBEEEETTBEE-EEEETTEEEECCGGGTCCCCHHHHHHHHHHHHT---TC--CEEECCC
T ss_pred HHHHHHHHHcCCCEEEEECCCCcEEEcCceEE-EEEECCEEECCCCCCCCCCCHHHHHHHHHHHHc---CC--eEEEEeC
Confidence 99999999999999999999999999999999 55699999999986 799999999999999998 87 9999999
Q ss_pred CHHHHhccceeeeecccCceEEEEEECCEEeCCCCccHHHHHHHHHHHHHHHcCC
Q 020956 256 TVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGP 310 (319)
Q Consensus 256 ~~~dL~~adevfl~ns~~gi~pV~~id~~~~~~g~~g~~~~~L~~~~~~~i~~~~ 310 (319)
+++||.+|||+|+|||++||+||.+||++.+++|++||+|++|+++|. .++.|.
T Consensus 243 ~~~eL~~adevfltns~~gv~PV~~id~~~~~~g~~g~~~~~l~~~~~-~~~~g~ 296 (309)
T 1iye_A 243 SRESLYLADEVFMSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQAFF-GLFTGE 296 (309)
T ss_dssp BTTHHHHCSEEEEEETTTEEEEEEEETTEECTTSSCCHHHHHHHHHHH-GGGTTS
T ss_pred CHHHHhhCcEEEEccCCCEEEEEEEECCEECCCCCCCHHHHHHHHHHH-HHHcCC
Confidence 999999999999999999999999999999998889999999999998 566564
No 6
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=100.00 E-value=1.5e-61 Score=442.39 Aligned_cols=263 Identities=20% Similarity=0.247 Sum_probs=235.6
Q ss_pred ecccCCeeeCCCCceeCCCCccccccceeeeeeeeeCCeecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC
Q 020956 27 SSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASN 106 (319)
Q Consensus 27 ~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~~~~ 106 (319)
.+|+|| .+++.|++.||||+||||+|||||+++|++|+|++|++||.+||+.|+|+.|++.++|.+.+.+++++++
T Consensus 5 ~~~~nG----~~~a~i~~~d~g~~yG~gvFEtir~~~g~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~~~~ 80 (272)
T 3lul_A 5 RVIEDK----GDMTPSFGIDDRIFLGEGLFETIRVNSSKPSFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKIQKDN 80 (272)
T ss_dssp EECCCC----C--CCCCCTTBGGGGTCEEEEEEEEETTEESSHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred EEEECC----ccccccCCccchhhcceEeEEEEEEECCEeCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 369999 6788999999999999999999999999999999999999999999999988999999999999999988
Q ss_pred CCCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCcccCCCcEEEEeeeecC-CCCCCCccccccHHHHHHHHHHHH
Q 020956 107 CRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIK-PPQFGTVKSVNYLPNVLSKMEAEE 185 (319)
Q Consensus 107 ~~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~-~~~~~~~Kt~ny~~~~~a~~~A~~ 185 (319)
..+++||+++++|.+.+++.++....|++++. .|.+ ....++++.++++++. ++.++++||+||+.+++++++|++
T Consensus 81 ~~~~~irl~v~rg~~~~g~~~~~~~~~~~~~~-~p~~--~~~~~v~l~~~~~~r~~~~~~~~~Kt~nyl~~~la~~~A~~ 157 (272)
T 3lul_A 81 LYHGGIKAILSGGPASRGLAERGQVSQLIFQT-FNYS--IQKHPVRLISINWLRDKANPLYQLKSVNYLEAIIAQRQAIA 157 (272)
T ss_dssp CSSEEEEEEEECCBCCSSTTCCCSSEEEEEEE-ECCC--CCCSCEEEEEEEEEECTTCGGGGSCBSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEecCCccCcCCCCCCCcEEEEE-ECCC--CccccEEEEEEeEEecCCCcccchhhhccHHHHHHHHHHHH
Confidence 88899999999998877777665556777765 4433 2234588888888875 446799999999999999999999
Q ss_pred cCCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCC-CCcccHHHHHHHHHHHhhhhCCccceEEEEeeCHHHHhccc
Q 020956 186 TGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAE 264 (319)
Q Consensus 186 ~g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~-~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i~~~dL~~ad 264 (319)
+|+||+||+|++|+|+|++++|| |+++||+|+|||++ ++|+||||+.||++|+++ |+ +|+|+.++++||.+||
T Consensus 158 ~G~de~L~ld~~g~v~E~~~sNi-f~~~~g~l~TP~l~~~iL~GitR~~ll~la~~~---g~--~v~e~~i~~~el~~ad 231 (272)
T 3lul_A 158 VGADDALFFNTENHVTETTCANL-FLIENNILYTPRVEDGILPGITRARLISHCQQH---KM--SVQEISLTKKRIEDAD 231 (272)
T ss_dssp TTCSEEEEEETTSBEEEESSCEE-EEEETTEEEECCGGGTCCCCHHHHHHHHHHHHT---TC--CEEECCCBHHHHHTCS
T ss_pred cCCCEEEEECCCCeEEEcCCeEE-EEEECCEEECCCCccCcCcCHHHHHHHHHHHHc---CC--eEEEEECCHHHHhhCC
Confidence 99999999999999999999999 55699999999986 899999999999999998 87 9999999999999999
Q ss_pred eeeeecccCceEEEEEECCEEeCCCCccHHHHHHHHHHHHHHHc
Q 020956 265 EMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQS 308 (319)
Q Consensus 265 evfl~ns~~gi~pV~~id~~~~~~g~~g~~~~~L~~~~~~~i~~ 308 (319)
|+|+|||++||+||.+||++.+++ |++|++.|.+..+.
T Consensus 232 evf~~ns~~~v~PV~~id~~~~~~------t~~l~~~y~~~~~~ 269 (272)
T 3lul_A 232 AVFLTNSLQGIRRVLSLDNIIFEV------NHPIIDKLIFLLNQ 269 (272)
T ss_dssp EEEEEETTTEEEEEEEETTEECCC------CCHHHHHHHHHHHH
T ss_pred EEEEEcCchhEEEEEEECCEEcch------HHHHHHHHHHHHhh
Confidence 999999999999999999999964 88999999876654
No 7
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=100.00 E-value=9.3e-61 Score=436.75 Aligned_cols=260 Identities=22% Similarity=0.306 Sum_probs=236.0
Q ss_pred cccCCeeeCCCCceeCCCCccccccceeeeeeeeeCCeecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCC
Q 020956 28 SIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNC 107 (319)
Q Consensus 28 ~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~~~~~ 107 (319)
+|+||+ .++.+++.||||+||||+||||++++|++++|++|++||.+||+.|+++.| +.++|.+.+.++++.+
T Consensus 2 ~~~nG~----~~~~i~~~d~g~~yG~gvfEtir~~~G~~~~l~~Hl~RL~~Sa~~l~~~~~-~~~~l~~~i~~~~~~~-- 74 (269)
T 1i2k_A 2 FLINGH----KQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCD-FWPQLEQEMKTLAAEQ-- 74 (269)
T ss_dssp EEETTE----EESCCCTTCHHHHHCCEEEEEEEEETTEETTHHHHHHHHHHHHHHTTCCCC-CHHHHHHHHHHHHHHH--
T ss_pred EEECCC----cCCccCccccccccceeEEEEEEEECCEEecHHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHhC--
Confidence 689999 357799999999999999999999999999999999999999999999877 8999999999999865
Q ss_pred CCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCcc---cCCCcEEEEeeeecC-CCCCCCccccccHHHHHHHHHH
Q 020956 108 RKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF---VSKGVKVITSSIPIK-PPQFGTVKSVNYLPNVLSKMEA 183 (319)
Q Consensus 108 ~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~l~~~~~~~~-~~~~~~~Kt~ny~~~~~a~~~A 183 (319)
.+++||+++++|.+.+++.|+.+..|++++.+.|.+... ..+|+++.+++.++. ++.++++||+||+.+++++++|
T Consensus 75 ~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~Kt~n~~~~~~a~~~A 154 (269)
T 1i2k_A 75 QNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHL 154 (269)
T ss_dssp CSEEEEEEEECCSCCSTTCCTTCCCCEEEEEEECCCSHHHHHHHHCEEEEECSCCBCCCTTTTBCCBSCCHHHHHHHHHH
T ss_pred CCeEEEEEEEcCCCCCCCCCccCCCcEEEEEEEECCCcchhhhcCCeEEEEeceecCCCCcccCcchhhhHHHHHHHHHH
Confidence 478999999999877777776666788988888876422 357999999876664 3467899999999999999999
Q ss_pred HHcCCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCC-CCcccHHHHHHHHHHHhhhhCCccceEEEEeeCHHHHhc
Q 020956 184 EETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKK 262 (319)
Q Consensus 184 ~~~g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~-~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i~~~dL~~ 262 (319)
+++|+||+||+|++|+|+|++++|| |+++||+|+|||++ ++|+||||+.||++|+++ |+ +|+|+.++++||.+
T Consensus 155 ~~~G~de~l~ld~~G~v~E~s~sNi-f~v~~g~l~TP~~~~~iL~GitR~~ll~~a~~~---g~--~v~e~~i~~~eL~~ 228 (269)
T 1i2k_A 155 EQTNADEALVLDSEGWVTECCAANL-FWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQS---SY--QLVEVQASLEESLQ 228 (269)
T ss_dssp TTSSCSEEEEEBTTSBEEECSSSEE-EEEETTEEEEECCSSSSBCCHHHHHHHHHHHHS---SS--EEEEECCBHHHHHT
T ss_pred HHCCCCEEEEECCCCcEEEcCceEE-EEEECCEEECCCCccCccCCHHHHHHHHHHHHc---CC--eEEEEECCHHHHhh
Confidence 9999999999999999999999999 55699999999987 799999999999999998 87 99999999999999
Q ss_pred cceeeeecccCceEEEEEECCEEeCCCCccHHHHHHHHHHH
Q 020956 263 AEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLIL 303 (319)
Q Consensus 263 adevfl~ns~~gi~pV~~id~~~~~~g~~g~~~~~L~~~~~ 303 (319)
|||+|+|||++||+||.+||++.++. ||+|++|+++|.
T Consensus 229 adevfltns~~gv~pV~~id~~~~~~---g~~~~~l~~~~~ 266 (269)
T 1i2k_A 229 ADEMVICNALMPVMPVCACGDVSFSS---ATLYEYLAPLCE 266 (269)
T ss_dssp CSEEEEECSSSCEEEEEEETTEECCC---CHHHHHHHHHHH
T ss_pred CCEEEEcCChhheEEEEEECCEEecC---cHHHHHHHHHHh
Confidence 99999999999999999999999964 799999999986
No 8
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=100.00 E-value=1.3e-60 Score=440.35 Aligned_cols=264 Identities=22% Similarity=0.308 Sum_probs=238.7
Q ss_pred ecccCCeeeCCCCceeCCCCccccccceeeeeeeeeCCeecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcC
Q 020956 27 SSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASN 106 (319)
Q Consensus 27 ~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~~~~ 106 (319)
.+|+||+++ +.+++.||||+||||+||||++++|++++|++|++||.+||++|+++.| .++|.+.+.++++..
T Consensus 23 ~~~~nG~~~----~~i~~~d~g~~yGdgvFEtir~~~G~~~~l~~Hl~RL~~Sa~~l~~~~~--~~~l~~~i~~~v~~~- 95 (292)
T 2xpf_A 23 LDWVDGRPA----AELSVRDRGLAYGDGLFETLAVRAGTPRLLERHLARLEEGCRRLAIPLD--TAALRQELLAFCAAL- 95 (292)
T ss_dssp CEEETTEEC----SEEETTBHHHHHCCEEEEEEEEETTEETTHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHHH-
T ss_pred EEEECCEEE----EEEcccchhhhcCcEeEEEEEEECCEECCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHhC-
Confidence 469999998 6799999999999999999999999999999999999999999999765 899999999998873
Q ss_pred CCCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCcc---cCCCcEEEEeeeecC-CCCCCCccccccHHHHHHHHH
Q 020956 107 CRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF---VSKGVKVITSSIPIK-PPQFGTVKSVNYLPNVLSKME 182 (319)
Q Consensus 107 ~~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~l~~~~~~~~-~~~~~~~Kt~ny~~~~~a~~~ 182 (319)
.+++||+++++|.+.+++.|..+..|++++.+.|.+... ..+|+++.+++.++. ++.++++||+||+.+++++++
T Consensus 96 -~~~~iR~~v~rg~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~~~~~~~~~~~~~Kt~ny~~~~la~~~ 174 (292)
T 2xpf_A 96 -GDGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPERHWQQGVRLFACRTRLAEQPLLAGLKHLNRLEQVLARAE 174 (292)
T ss_dssp -CSEEEEEEEECCBCCSSSSCCTTCCCEEEEEEECCCCCCHHHHHTCEEEEECCCCBCCCTTTTBCCBSCCHHHHHHHTT
T ss_pred -CCcEEEEEEEecCCCCCCCCCCCCCcEEEEEEEECCccchhhccCCeEEEEeeeeccCCCCCCCcchhhhHHHHHHHHH
Confidence 478999999999877777776666788888888876432 357999999887654 446789999999999999999
Q ss_pred HHHcCCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCC-CCcccHHHHHHHHHHHhhhhCCccceEEEEeeCHHHHh
Q 020956 183 AEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGK 261 (319)
Q Consensus 183 A~~~g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~-~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i~~~dL~ 261 (319)
|+++|+||+||+|++|+|+|++++|| |+++||+|+|||++ ++|+||||+.||++|+++ |+ +|+|+.++++||.
T Consensus 175 A~~~G~de~L~ld~~G~V~Egs~sNi-f~v~~g~l~TPpl~~~iL~GitR~~vl~~a~~~---G~--~v~E~~i~~~eL~ 248 (292)
T 2xpf_A 175 WSDAGHAEGLMLDVHERVVEGVFSNL-LLVLDGTLVAPDLRRCGVAGVMRAELLERAEGI---GV--PLAIRDVSMAELA 248 (292)
T ss_dssp CCCTTCSEEEEEBTTCCEEEESSSEE-EEEETTEEEEECCSSSSBCCHHHHHHHHHHHHT---TC--CEEEECBCHHHHH
T ss_pred HHHcCCCEEEEECCCCCEEEcCCeEE-EEEECCEEEeCCCCCccCCCHHHHHHHHHHHHc---CC--eEEEEeCCHHHHH
Confidence 99999999999999999999999999 55699999999986 799999999999999998 87 9999999999999
Q ss_pred ccceeeeecccCceEEEEEECCEEeCCCCccHHHHHHHHHHHHHHH
Q 020956 262 KAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQ 307 (319)
Q Consensus 262 ~adevfl~ns~~gi~pV~~id~~~~~~g~~g~~~~~L~~~~~~~i~ 307 (319)
+|||+|+|||++||+||.+||++.++ +||+|++|+++|.+++.
T Consensus 249 ~adevfltns~~gv~PV~~id~~~~~---~g~~t~~l~~~~~~~~~ 291 (292)
T 2xpf_A 249 TADEVFLCNSQFGIWPVRALDEHVWP---VGELTRKLQDQLRDDLD 291 (292)
T ss_dssp TCSEEEEEETTTEEEEEEEETTEECC---CCHHHHHHHHHHHHHHC
T ss_pred hCCEEEEEcCcccEEEEEEECCEEeC---CCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999996 58999999999987653
No 9
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=100.00 E-value=6.7e-61 Score=452.26 Aligned_cols=288 Identities=21% Similarity=0.264 Sum_probs=249.3
Q ss_pred HHHHHHhcccCcccchhhhhheecccCCeeeCCCCceeCCCCccccccceeeeeeeee---CCe--ecChHHHHHHHHHH
Q 020956 5 AIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAIC---DGY--LYELDQHLDRIIRS 79 (319)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~---~G~--~~~l~~Hl~RL~~S 79 (319)
|||||....|... .|+||++++.+++.|++.||||+|||||||||+++ +|+ +|+|++|++||.+|
T Consensus 35 ~td~m~~~~~~~~----------~w~ng~i~p~~~~~i~~~d~gl~yGdgvFE~ir~y~~~dG~i~lfrl~~Hl~RL~~S 104 (358)
T 3uzo_A 35 RTDLRYLAHWKDG----------EWDAGTLTEDNQIHLAEGSTALHYGQQCFEGLKAYRCADGSINLFRPDQNAARMRMS 104 (358)
T ss_dssp CCSCEEEEEEETT----------EECCCEEESCCEEEEETTCHHHHSCCEEECCEEEEECTTSCEEECCHHHHHHHHHHH
T ss_pred ccCeeEEEEEeCC----------cEECCEEeEcccceeChHHcceecCcEEEEEEEEEECCCCcEeecCHHHHHHHHHHH
Confidence 5777777777432 29999999999999999999999999999999999 565 89999999999999
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCC--------CCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCcc--cCC
Q 020956 80 ASMAKIQLPFDRKSLRRILIQTVSASNC--------RKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF--VSK 149 (319)
Q Consensus 80 a~~l~i~~p~~~~~l~~~i~~l~~~~~~--------~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 149 (319)
|++|+|+ +++.++|.++++++++.++. .++|||++++++.+.+++.|.. .+.+++++.|.+... ..+
T Consensus 105 a~~L~ip-~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~G~~p~~--~~~~~i~~~P~~~~~~~g~~ 181 (358)
T 3uzo_A 105 CRRLLMP-ELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVRTAP--EFIFSVFCVPVGPYFKGGLT 181 (358)
T ss_dssp HHHTTCC-CCCHHHHHHHHHHHHHHTGGGSCCTTSCCEEEEEEEEEEESSCCSSSCCS--EEEEEEEEEEECCSSCSSSC
T ss_pred HHHhCCC-CCCHHHHHHHHHHHHHHcCCcCCCCCCCceEEEEEEEEecCCccccCCCC--CeEEEEEEecChhhhhcCCc
Confidence 9999998 78999999999999998863 3469999999988777776643 567777777754221 246
Q ss_pred CcEEEEeeeecCCC-CCCCcc-ccccHHHHHHHHHHHHcCCcEEEEEcCC--CcEEEeccceEEEEEeCcE-EEcCCCCC
Q 020956 150 GVKVITSSIPIKPP-QFGTVK-SVNYLPNVLSKMEAEETGAFAAIWLDGE--GFIAEGPNMNVAFVTKERL-LLMPQFDK 224 (319)
Q Consensus 150 g~~l~~~~~~~~~~-~~~~~K-t~ny~~~~~a~~~A~~~g~dd~l~ld~~--g~v~E~~~sNvffv~~~~~-l~TP~~~~ 224 (319)
|+++.++++.|..+ .++++| ++||+.+++|+++|+++|+||+||+|.+ |+|+|++++||||+.+||+ |+||+.++
T Consensus 182 ~v~l~~~~~~R~~p~~~~~~K~~~NYl~~vla~~eA~~~G~~e~l~ld~~~~g~V~E~~~sNif~v~~dg~~l~TP~~~~ 261 (358)
T 3uzo_A 182 PTNFITSDYDRAAPHGTGAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFVTPQSPS 261 (358)
T ss_dssp CEEEECCSCCSSCTTSSTTSCBHHHHHHHHHHHHHHHHTTCSEECCBCTTTSCBBCBCSSSEEEEEETTSCEEEEECCTT
T ss_pred cEEEEEEeeeccCCCccccccchhhhHHHHHHHHHHHHcCCCEEEEEeCCCCCeEEEcCCeeEEEEECCCeEEEECCcCC
Confidence 78998888777543 568999 6999999999999999999999999985 9999999999966546788 99999338
Q ss_pred CcccHHHHHHHHHHHh-hhhCCccceEEEEeeCHHHHhccceeeeecccCceEEEEEECCE----EeCC-CCccHHHHHH
Q 020956 225 ILSGCTAKRVLTLAKA-LVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQ----VIGN-GKEGPIAQAL 298 (319)
Q Consensus 225 iL~GitR~~vl~~~~~-~~~~g~~~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~id~~----~~~~-g~~g~~~~~L 298 (319)
||+||||+.||++|++ + |+ +|+|+.++++||.+|||+|+|||+.||+||.+||++ .+++ +++||+|++|
T Consensus 262 iL~GItR~~vl~la~~~~---g~--~v~e~~i~~~eL~~adEvf~t~t~~~i~PV~~Id~~~~~~~i~~~~~~Gpvt~~L 336 (358)
T 3uzo_A 262 ILPSITKYSLLWLAEHRL---GL--EVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGDDFHVFYSESEPGPVTRRL 336 (358)
T ss_dssp SCCCHHHHHHHHHHHHTT---CC--EEEEECCBTTCGGGEEEEEEECTTTSSEEEEEEEETTEEEESSCSSSCCHHHHHH
T ss_pred cccCHHHHHHHHHHHhhc---CC--eEEEEECCHHHHHhhcceeEEcCcceEEEEEEECcccceeEeCCCCCcCHHHHHH
Confidence 9999999999999999 8 87 999999999999999999999999999999999986 6754 4699999999
Q ss_pred HHHHHHHHHcCCC
Q 020956 299 LDLILEDMQSGPP 311 (319)
Q Consensus 299 ~~~~~~~i~~~~~ 311 (319)
+++|. .||.|..
T Consensus 337 ~~~~~-~iq~g~~ 348 (358)
T 3uzo_A 337 YDELV-GIQYGDK 348 (358)
T ss_dssp HHHHH-HHHTTSS
T ss_pred HHHHH-HHHcCCC
Confidence 99998 8998854
No 10
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=100.00 E-value=3.5e-60 Score=440.94 Aligned_cols=262 Identities=22% Similarity=0.250 Sum_probs=205.2
Q ss_pred eecccC---Cee--eCCCCceeCCCCccccccceeeeeeeeeCCeecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 020956 26 YSSIFG---GIT--TDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQ 100 (319)
Q Consensus 26 ~~~~~n---G~~--~~~~~~~i~~~drg~~yG~gvFEt~rv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~ 100 (319)
..+|+| |++ ++.+++.|+++||||+|||||||||++++|++|+|++|++||.+||+.|+|+.| +.++|.+++.+
T Consensus 15 ~~v~~n~~~G~~~~~~~~~a~i~~~Drg~~yGdgvFEtirv~~G~~~~l~~Hl~RL~~Sa~~L~i~~p-~~~~l~~~i~~ 93 (315)
T 3sno_A 15 VILIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDGHACNVRRHGERFKASAALLGLPEP-ILEDWEKATQM 93 (315)
T ss_dssp EEEEECSTTCCEEEECTTSCCCCTTBTTTTTCCEEEEEEEEETTEETTHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHHH
T ss_pred EEEEEECCCCeEEEeeHHHCcccccchHhhcCCEeEEEEEEECCEECCHHHHHHHHHHHHHHhCCCCc-CHHHHHHHHHH
Confidence 357999 999 999999999999999999999999999999999999999999999999999877 89999999999
Q ss_pred HHHH----cCCCCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCcc---cCCCcEEEEeeeec-------------
Q 020956 101 TVSA----SNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF---VSKGVKVITSSIPI------------- 160 (319)
Q Consensus 101 l~~~----~~~~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~l~~~~~~~------------- 160 (319)
+++. |+..+++||+++++|.+.++ .|++++++.|.+... ..+|+++.+++.+.
T Consensus 94 ~v~~~~~~n~~~~~~iRl~vtrG~~~~g-------~p~~~v~~~p~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~~~ 166 (315)
T 3sno_A 94 GIESWYSHPNAGEASCTWTLSRGRSSTG-------LASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPGIGKAT 166 (315)
T ss_dssp HHHHHHTC--CCCEEEEEEEECCBTTTC-------CCEEEEEEEECCHHHHHHHHHCEEEEEEEC---------------
T ss_pred HHHhhcccCCCCCEEEEEEEEeCCCCCC-------CCEEEEEEEECCCcchhhhcCCEEEEEeccccccccccccccccc
Confidence 9987 56678999999999876542 367888888765322 35799998876321
Q ss_pred -----------CCCCCCCccccccHHHHHHHHHHHHcCCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCC-CCccc
Q 020956 161 -----------KPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD-KILSG 228 (319)
Q Consensus 161 -----------~~~~~~~~Kt~ny~~~~~a~~~A~~~g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~-~iL~G 228 (319)
.+|.++++||+||+.+++|+++|+++|+||+||+|.+| |+|++++|| |+++||+|+|||++ ++|+|
T Consensus 167 r~~~s~~~~~~~p~~l~~~Kt~nyl~~vla~~~A~~~G~de~l~l~~~G-v~E~s~sN~-f~~~~g~l~TPp~~~~iL~G 244 (315)
T 3sno_A 167 RGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDDVIFTDGDR-VLEGATSTV-VSFKGDKIRTPSPGGDILPG 244 (315)
T ss_dssp --------------------------------------CEEEEEEETTE-EEEESSSEE-EEEETTEEEEECCC------
T ss_pred cccccccccccCcccccCcchhccHHHHHHHHHHHHcCCCEEEEEeCCC-cEEcCCeeE-EEEECCEEEcCCCCCCcChh
Confidence 12346899999999999999999999999999999999 999999999 55699999999987 79999
Q ss_pred HHHHHHHHHHHhhhhCCccceEEEEeeCHHHHhccceeeeecccCceEEEEEECCEEeCCCCccHHHHHHHHHHHHH
Q 020956 229 CTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILED 305 (319)
Q Consensus 229 itR~~vl~~~~~~~~~g~~~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~id~~~~~~g~~g~~~~~L~~~~~~~ 305 (319)
|||+.|+++|+++ |+ +|+|+.++++||.+|||+|+|||++||+||++||++.++ .+|++++|+++|++.
T Consensus 245 itR~~ll~~a~~~---g~--~v~e~~i~~~eL~~adevfl~ns~~gv~pV~~id~~~~~---~~~~~~~l~~~~~~~ 313 (315)
T 3sno_A 245 TTQAALFAHATEK---GW--RCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRLDGHKLR---KPDNEKEIKALITKA 313 (315)
T ss_dssp HHHHHHHHHHHHT---TC--EEEEECCBHHHHHHSSEEEEEETTTEEEEEEEESSSCCC---CCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---CC--EEEEEECCHHHHHhCCeeEEEcCcccEEEEEEECCEECC---CChHHHHHHHHHHHh
Confidence 9999999999998 87 999999999999999999999999999999999999996 478999999999854
No 11
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=1.7e-59 Score=443.78 Aligned_cols=288 Identities=22% Similarity=0.319 Sum_probs=250.4
Q ss_pred HHHHHHhcccCcccchhhhhheecccCCeeeCCCCceeCCCCccccccceeeeeeeee---CCe--ecChHHHHHHHHHH
Q 020956 5 AIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAIC---DGY--LYELDQHLDRIIRS 79 (319)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~---~G~--~~~l~~Hl~RL~~S 79 (319)
|||||....|.... .|.||++++.+++.|++.|++|+|||||||||+++ +|+ +|++++|++||.+|
T Consensus 39 ~td~m~~~~~~~~~---------~W~~g~i~p~~~~~i~~~d~gl~yGdgvFEglkay~~~dG~i~lFrl~~H~~RL~~S 109 (372)
T 3dth_A 39 YTDHMVSIDYTVDE---------GWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQSS 109 (372)
T ss_dssp CCSEEEEEEEETTT---------EEEEEEEEESCCEEECTTCTHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHH
T ss_pred cCCceEEEEEcCCC---------eEECCcEeehHhcccCccccHhhcCcEEEEEEEEEECCCCcEeecCHHHHHHHHHHH
Confidence 57788777775432 49999999999999999999999999999999998 776 79999999999999
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCC--------CCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCcc--cCC
Q 020956 80 ASMAKIQLPFDRKSLRRILIQTVSASNC--------RKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF--VSK 149 (319)
Q Consensus 80 a~~l~i~~p~~~~~l~~~i~~l~~~~~~--------~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 149 (319)
|++|+|+ +++.++|.++++++++.++. ...|||++++++.+.+++.|.. .+++++++.|.+... ..+
T Consensus 110 a~~L~mp-~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~lYiRp~~~~~~~~~G~~p~~--~~~~~i~~~p~~~y~~~g~~ 186 (372)
T 3dth_A 110 ARRLAIP-ELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSN--EYRYLLIASPAGAYFKGGIK 186 (372)
T ss_dssp HHHTTCC-CCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCSSCSCCS--EEEEEEEEEEESCSSSCSSS
T ss_pred HHHhCCC-CCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEcCCCcCCcCCCC--CeEEEEEEeeCchhhccCCc
Confidence 9999998 78999999999999998752 3468999999876667776543 577888887764321 236
Q ss_pred CcEEEEee-eecC-CCCCCCccc-cccHHHHHHHHHHHHcCCcEEEEEcC--CCcEEEeccceEEEEEeCc----EEEcC
Q 020956 150 GVKVITSS-IPIK-PPQFGTVKS-VNYLPNVLSKMEAEETGAFAAIWLDG--EGFIAEGPNMNVAFVTKER----LLLMP 220 (319)
Q Consensus 150 g~~l~~~~-~~~~-~~~~~~~Kt-~ny~~~~~a~~~A~~~g~dd~l~ld~--~g~v~E~~~sNvffv~~~~----~l~TP 220 (319)
|+++.+++ +.|. +..++.+|+ +||+.+++|+++|+++|+||+||+|. +|+|+|++++|||| ++++ +|+||
T Consensus 187 ~v~l~v~~~~~R~~p~g~~~~K~~gNY~~~~la~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~-v~~~~~g~~l~TP 265 (372)
T 3dth_A 187 PVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFF-VFGSGGSARLVTP 265 (372)
T ss_dssp CEEEEECSSCCSCCTTSSTTSCCHHHHHTTHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEE-EESCGGGCEEEEC
T ss_pred cEEEEEccceeccCCCcccchhhHhhhHHHHHHHHHHHHcCCCEEEEEcCCCCCEEEEcCceeEEE-EECCCCceEEEEC
Confidence 88888774 5554 445789997 89999999999999999999999998 99999999999955 5777 99999
Q ss_pred CCC-CCcccHHHHHHHHHHHhhhhCCccceEEEEeeCHHHHhcc------ceeeeecccCceEEEEEECCE----EeCCC
Q 020956 221 QFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKA------EEMILLGSGVLVRPVVQWDEQ----VIGNG 289 (319)
Q Consensus 221 ~~~-~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i~~~dL~~a------devfl~ns~~gi~pV~~id~~----~~~~g 289 (319)
+++ +||+||||+.||++|+++ |+ +|+|+.++++||.+| ||+|+|||+.+|+||.+||++ .+++|
T Consensus 266 ~l~~~iL~GITR~~vl~la~~~---G~--~v~Er~i~~~eL~~a~~~g~~dEvf~tgTa~~i~PV~~Id~~~~~~~i~~g 340 (372)
T 3dth_A 266 ELSGSLLPGITRDSLLQLATDA---GF--AVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADG 340 (372)
T ss_dssp CCCSSSCCCHHHHHHHHHHHHH---TC--EEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEEEEEEEEETTEEEECTTS
T ss_pred CCCCCcCHHHHHHHHHHHHHHC---CC--eEEEEECCHHHHHhhhhcCCccEEEEecccceEEEEEEEccCCceEECCCC
Confidence 986 799999999999999998 87 999999999999998 999999999999999999875 77888
Q ss_pred CccHHHHHHHHHHHHHHHcCCC
Q 020956 290 KEGPIAQALLDLILEDMQSGPP 311 (319)
Q Consensus 290 ~~g~~~~~L~~~~~~~i~~~~~ 311 (319)
++||+|++|+++|. .||.|..
T Consensus 341 ~~Gpvt~~L~~~l~-~iq~g~~ 361 (372)
T 3dth_A 341 QPGEITMALRDTLT-GIQRGTF 361 (372)
T ss_dssp SCCHHHHHHHHHHH-HHHHTSS
T ss_pred CcCHHHHHHHHHHH-HHHcCCC
Confidence 89999999999998 8998854
No 12
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=100.00 E-value=2.4e-59 Score=443.90 Aligned_cols=289 Identities=18% Similarity=0.207 Sum_probs=247.6
Q ss_pred HHHHHHhcccCcccchhhhhheecccCCeeeCCCCceeCCCCccccccceeeeeeeeeCC-----eecChHHHHHHHHHH
Q 020956 5 AIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDG-----YLYELDQHLDRIIRS 79 (319)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~G-----~~~~l~~Hl~RL~~S 79 (319)
|+|||....|.. . +|+||++++.+++.+++.||+|+|||||||||++++| ++|+|++|++||.+|
T Consensus 34 ~~d~m~~~~~~~-~---------~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEt~r~y~g~dG~i~~f~l~~Hl~RL~~S 103 (365)
T 2a1h_A 34 FTDHMLMVEWND-K---------GWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRS 103 (365)
T ss_dssp CCSEEEEEEEET-T---------EECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHHH
T ss_pred cccceeeeeccc-C---------eEECCEEeEcccceeCccchhhhcCceeEeEEEEEecCCCceeecCHHHHHHHHHHH
Confidence 566666555532 2 5999999999999999999999999999999999854 789999999999999
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCccc---CC
Q 020956 80 ASMAKIQLPFDRKSLRRILIQTVSASNC-------RKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFV---SK 149 (319)
Q Consensus 80 a~~l~i~~p~~~~~l~~~i~~l~~~~~~-------~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 149 (319)
|++|+|+ +++.++|.+++.++++.++. .+.+||++++++.+.+++.|. ..+++++++.|.+.... .+
T Consensus 104 a~~l~~~-~~~~~~l~~~i~~lv~~~~~~~p~~~g~~~yiR~~~~~~~~~~g~~p~--~~~~~~i~~~p~~~~~~~g~~~ 180 (365)
T 2a1h_A 104 AMRLCLP-SFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQP--RRALLFVILCPVGAYFPGGSVT 180 (365)
T ss_dssp HHHTTCC-CCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCC--SEEEEEEEEEEECCSSSSSSCC
T ss_pred HHHhCCC-CCCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCC--CCcEEEEEEEECcccccccccc
Confidence 9999998 78999999999999998752 235899999998777777654 36788888887653221 46
Q ss_pred CcEEEEeee-ecC-CCCCCCccc-cccHHHHHHHHHHHHcCCcEEEEE-cCCCcEEEeccceEEEEEe--CcE--EEcCC
Q 020956 150 GVKVITSSI-PIK-PPQFGTVKS-VNYLPNVLSKMEAEETGAFAAIWL-DGEGFIAEGPNMNVAFVTK--ERL--LLMPQ 221 (319)
Q Consensus 150 g~~l~~~~~-~~~-~~~~~~~Kt-~ny~~~~~a~~~A~~~g~dd~l~l-d~~g~v~E~~~sNvffv~~--~~~--l~TP~ 221 (319)
|+++.+++. .|. ++.++++|+ +||+.+++++++|+++|+||+||+ |.+|+|+|++++||||+.+ ||+ |+|||
T Consensus 181 ~v~l~~~~~~~R~~~~~~~~~Kt~~ny~~~~la~~eA~~~G~de~L~l~d~~G~V~E~~~sNif~v~~~~dg~~~l~TP~ 260 (365)
T 2a1h_A 181 PVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPP 260 (365)
T ss_dssp CEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEETTTTEEEEETTEEEEEEEECTTSCEEEEECC
T ss_pred ceEEEEccccccCCCCccchhchhhccHHHHHHHHHHHHcCCCeEEEEECCCCeEEEcCceEEEEEEecCCCcEEEEeCC
Confidence 799988873 443 446789997 999999999999999999999999 8999999999999966544 665 99999
Q ss_pred CC-CCcccHHHHHHHHHHHh-hhhCCccceEEEEeeCHHHHhcc------ceeeeecccCceEEEEEEC--CEEeC---C
Q 020956 222 FD-KILSGCTAKRVLTLAKA-LVREGKLHGIKVGNVTVEEGKKA------EEMILLGSGVLVRPVVQWD--EQVIG---N 288 (319)
Q Consensus 222 ~~-~iL~GitR~~vl~~~~~-~~~~g~~~~v~e~~i~~~dL~~a------devfl~ns~~gi~pV~~id--~~~~~---~ 288 (319)
++ +||+||||+.||++|++ . |+ +|+|+.++++||.+| ||+|+|||++||+||.+|| ++.+. +
T Consensus 261 l~~~iL~GITR~~vl~la~~~~---G~--~v~Er~i~~~eL~~A~~~g~~dEvf~tnt~~~i~PV~~i~~~~~~~~~~~~ 335 (365)
T 2a1h_A 261 LNGVILPGVVRQSLLDMAQTWG---EF--RVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTM 335 (365)
T ss_dssp CSSSSCCCHHHHHHHHHHHHHT---SS--EEEECCCBHHHHHHHHHTTCEEEEEEEETTTEEEEEEEEEETTEEEECTTG
T ss_pred CCCCccccHHHHHHHHHHHhcC---CC--ceEEEeCCHHHHHHHHhcCCccEEEEcCCeeEEEEEEEEEeCCeEEeeCCC
Confidence 96 79999999999999998 5 77 999999999999999 9999999999999999999 88763 4
Q ss_pred CCccHHHHHHHHHHHHHHHcCCCC
Q 020956 289 GKEGPIAQALLDLILEDMQSGPPT 312 (319)
Q Consensus 289 g~~g~~~~~L~~~~~~~i~~~~~~ 312 (319)
|++||+|++|+++|. .++.|..+
T Consensus 336 g~~g~vt~~L~~~~~-~~~~g~~~ 358 (365)
T 2a1h_A 336 ENGPELILRFQKELK-EIQYGIRA 358 (365)
T ss_dssp GGTTHHHHHHHHHHH-HHHTTSSC
T ss_pred CCcCHHHHHHHHHHH-HHHcCCCC
Confidence 678999999999997 88888543
No 13
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=100.00 E-value=4.5e-59 Score=444.12 Aligned_cols=289 Identities=19% Similarity=0.223 Sum_probs=249.4
Q ss_pred HHHHHHhcccCcccchhhhhheecccCCeeeCCCCceeCCCCccccccceeeeeeeeeCC-----eecChHHHHHHHHHH
Q 020956 5 AIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDG-----YLYELDQHLDRIIRS 79 (319)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~G-----~~~~l~~Hl~RL~~S 79 (319)
|+|||....|.... .|+||++++.+++.+++.|++|+||+||||||++++| ++|++++|++||.+|
T Consensus 53 ~td~m~~~~~~~~~---------~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEg~k~y~g~dg~i~~frld~H~~RL~~S 123 (386)
T 2coi_A 53 FTDHMLTVEWSSEF---------GWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRS 123 (386)
T ss_dssp CCSEEEEEEEETTT---------EECCCEEEECCCEEECTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHHHHHH
T ss_pred cccceEEEEeCCCc---------EEECCEEeecccCccCcccchhhcCceeEEEEEEEeCCCCceeecCHHHHHHHHHHH
Confidence 56777766664332 4999999999999999999999999999999999988 899999999999999
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHcCC-------CCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCccc---CC
Q 020956 80 ASMAKIQLPFDRKSLRRILIQTVSASNC-------RKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFV---SK 149 (319)
Q Consensus 80 a~~l~i~~p~~~~~l~~~i~~l~~~~~~-------~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 149 (319)
|++|+|+ +++.++|.+++.++++.++. ...+||++++++.+.+++.|+. .+++++++.|.+.... .+
T Consensus 124 a~~l~~p-~~~~e~~~~~i~~lv~~~~~~vp~~~g~~~yiR~~~~~~~~~~g~~p~~--~~~~~i~~~p~~~y~~~~~~~ 200 (386)
T 2coi_A 124 AVRATLP-VFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPT--KALLFVLLSPVGPYFSSGTFN 200 (386)
T ss_dssp HHHTTCC-CCCHHHHHHHHHHHHHHTGGGSCSSSSCEEEEEEEEEECCCSCSCSCCS--EEEEEEEEEEECCCC-----C
T ss_pred HHhcCCC-CCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCccccCCCC--CcEEEEEEEECcccccccccc
Confidence 9999998 78999999999999998752 2469999999876667776553 6788888887653221 46
Q ss_pred CcEEEEeeee-cC-CCCCCCccc-cccHHHHHHHHHHHHcCCcEEEEEc-CCCcEEEeccceEEEEE--eCc--EEEcCC
Q 020956 150 GVKVITSSIP-IK-PPQFGTVKS-VNYLPNVLSKMEAEETGAFAAIWLD-GEGFIAEGPNMNVAFVT--KER--LLLMPQ 221 (319)
Q Consensus 150 g~~l~~~~~~-~~-~~~~~~~Kt-~ny~~~~~a~~~A~~~g~dd~l~ld-~~g~v~E~~~sNvffv~--~~~--~l~TP~ 221 (319)
|+++.+++.. |. +..++.+|+ +||+.+++++++|+++|+||+||+| .+|+|+|++++||||+. +|| +|+||+
T Consensus 201 ~v~l~~~~~~~r~~p~~~g~~K~~~Ny~~~~la~~eA~~~G~de~L~ld~~~g~V~E~~~sNiF~v~~~~~g~~~l~TP~ 280 (386)
T 2coi_A 201 PVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPP 280 (386)
T ss_dssp CEEEEECTTCCSCCTTSSTTSCCTHHHHTTHHHHHHHHTTTCSEEEEEETTTTEEEEETTEEEEEEEECTTSCEEEEECC
T ss_pred cEEEEEcccccccCCCcccccccccChHHHHHHHHHHHHcCCCEEEEEECCCCEEEEeCCceEEEEEEcCCCCEEEEECC
Confidence 8999888642 43 334678996 8999999999999999999999999 79999999999996654 488 999999
Q ss_pred CC-CCcccHHHHHHHHHHHh-hhhCCccceEEEEeeCHHHHhcc------ceeeeecccCceEEEEEEC--CEEeC---C
Q 020956 222 FD-KILSGCTAKRVLTLAKA-LVREGKLHGIKVGNVTVEEGKKA------EEMILLGSGVLVRPVVQWD--EQVIG---N 288 (319)
Q Consensus 222 ~~-~iL~GitR~~vl~~~~~-~~~~g~~~~v~e~~i~~~dL~~a------devfl~ns~~gi~pV~~id--~~~~~---~ 288 (319)
++ +||+||||+.||++|++ + |+ +|+|+.++++||.+| ||+|+|||+++|+||.+|+ ++.++ +
T Consensus 281 l~~~iL~GITR~~vl~la~~~~---G~--~V~Er~i~~~eL~~A~~~g~~dEvF~tgTa~~i~PV~~I~~~~~~~~~~~~ 355 (386)
T 2coi_A 281 LDGIILPGVTRRCILDLAHQWG---EF--KVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTM 355 (386)
T ss_dssp CSSSSCCCHHHHHHHHHHHHHC---SS--EEEECCCBHHHHHHHHTTTCEEEEEEEETTTEEEEEEEEEESSSEEECGGG
T ss_pred CCCCccHHHHHHHHHHHHHhcc---CC--cEEEEECCHHHHHHHHhcCCccEEEEecceeEEEEEEEEeeCCeEEecCCC
Confidence 97 79999999999999998 6 87 999999999999999 9999999999999999999 88876 4
Q ss_pred CCccHHHHHHHHHHHHHHHcCCC
Q 020956 289 GKEGPIAQALLDLILEDMQSGPP 311 (319)
Q Consensus 289 g~~g~~~~~L~~~~~~~i~~~~~ 311 (319)
|++||+|++|+++|. .||.|..
T Consensus 356 g~~g~vt~~L~~~l~-~iq~g~~ 377 (386)
T 2coi_A 356 ENGPKLASRILSKLT-DIQYGRE 377 (386)
T ss_dssp GGTTHHHHHHHHHHH-HHHTTSS
T ss_pred CCcCHHHHHHHHHHH-HHhCCCC
Confidence 568999999999998 8999854
No 14
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=9e-58 Score=433.73 Aligned_cols=290 Identities=22% Similarity=0.320 Sum_probs=243.8
Q ss_pred HHHHHHHhcccCcccchhhhhheecccCCeeeCCCCceeCCCCccccccceeeeeeeee---CCe--ecChHHHHHHHHH
Q 020956 4 KAIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAIC---DGY--LYELDQHLDRIIR 78 (319)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~---~G~--~~~l~~Hl~RL~~ 78 (319)
.|||||..+.|+.+. + |.||+++|.++++|++.|++|+|||||||+||+| ||+ +|++++|++||.+
T Consensus 38 ~~tdhm~~~~~~~~~--g-------W~ng~ivp~~~~~i~p~~~~lhYG~gvFEgiraY~~~dG~i~~Fr~~~h~~Rl~~ 108 (372)
T 3dtg_A 38 YYTDHMVSIDYTVDE--G-------WHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQS 108 (372)
T ss_dssp CCCSEEEEEEEETTT--E-------EEEEEEEESCCEEECTTCTHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHH
T ss_pred CccceeEEEEECCCC--c-------EeCCEEEEchhceeCcchhhhhccceeeeeEEEEECCCCeEEeeCchHHHHHHhh
Confidence 479999999997665 3 9999999999999999999999999999999998 675 5899999999999
Q ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHcC--------CCCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCcc--cC
Q 020956 79 SASMAKIQLPFDRKSLRRILIQTVSASN--------CRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF--VS 148 (319)
Q Consensus 79 Sa~~l~i~~p~~~~~l~~~i~~l~~~~~--------~~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 148 (319)
||++|.||. ++.+.+..++.++++.+. ..+.|||+.++++.+..++.|.. .+.+++++.|..... ..
T Consensus 109 Sa~~l~iP~-~~~e~~~~~~~~l~~~~~~~v~~~~~~~~~YiRp~~~~~~~~lgv~p~~--~~~~~ii~~p~~~~~~~~~ 185 (372)
T 3dtg_A 109 SARRLAIPE-LPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSN--EYRYLLIASPAGAYFKGGI 185 (372)
T ss_dssp HHHHTTCCC-CCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCCSCSCCS--EEEEEEEEEEESCSSTTSS
T ss_pred cccccCCCC-CCHHHHHHHHHHHHHHhhhhccccCCCCceEEEEEEEeecCccCcCCCC--CceeeeEecccccccccCc
Confidence 999999974 588889999998887642 23469999999998877776643 566667776643221 12
Q ss_pred CCcEEEEe-eeecCCC-CCCCcc-ccccHHHHHHHHHHHHcCCcEEEEEc--CCCcEEEeccceEEEEE---eCcEEEcC
Q 020956 149 KGVKVITS-SIPIKPP-QFGTVK-SVNYLPNVLSKMEAEETGAFAAIWLD--GEGFIAEGPNMNVAFVT---KERLLLMP 220 (319)
Q Consensus 149 ~g~~l~~~-~~~~~~~-~~~~~K-t~ny~~~~~a~~~A~~~g~dd~l~ld--~~g~v~E~~~sNvffv~---~~~~l~TP 220 (319)
+...+.++ +..|..+ .....| ++||+.+++++.+|+++||||+||+| .+|+|+|++++|||||. |+|+++||
T Consensus 186 ~~~~~~~~~~~~R~~p~~~~~~K~~gNY~~~~la~~eA~~~G~deal~Ld~~~~g~V~E~~~sNiF~V~~~~kdg~liTP 265 (372)
T 3dtg_A 186 KPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTP 265 (372)
T ss_dssp SCEEEEECSSCCSCCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEESCGGGCEEEEC
T ss_pred ccceeecccceeecCcCCcchHHhcCCcchhhhHHHHHHhcCcchhhhhccccccceeecCceEEEEEEecCCCceEEeC
Confidence 23333333 4444433 344455 88999999999999999999999999 47889999999996654 67799999
Q ss_pred CCC-CCcccHHHHHHHHHHHhhhhCCccceEEEEeeCHHHHhcc------ceeeeecccCceEEEEEECCE----EeCCC
Q 020956 221 QFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKA------EEMILLGSGVLVRPVVQWDEQ----VIGNG 289 (319)
Q Consensus 221 ~~~-~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i~~~dL~~a------devfl~ns~~gi~pV~~id~~----~~~~g 289 (319)
|++ +||+||||+.||++|+++ |+ +|+||+++++||.+| ||+|+|||+.+|+||.+||++ .+++|
T Consensus 266 pl~~~iL~GITR~sVi~LA~~~---Gi--~V~Er~it~~El~~A~~~~~~dEvF~tGTaa~I~PV~~Id~~~~~~~ig~G 340 (372)
T 3dtg_A 266 ELSGSLLPGITRDSLLQLATDA---GF--AVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADG 340 (372)
T ss_dssp CCCSSSCCCHHHHHHHHHHHHH---TC--EEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEEEEEEEEETTEEEECTTS
T ss_pred CccccccccHHHHHHHHHHHHC---Cc--eEEEEeCCHHHHHHHhhcCCCcEEEECCCcceEEEEEEEecCCceEEcCCC
Confidence 987 799999999999999999 87 999999999999988 999999999999999999865 78999
Q ss_pred CccHHHHHHHHHHHHHHHcCCC
Q 020956 290 KEGPIAQALLDLILEDMQSGPP 311 (319)
Q Consensus 290 ~~g~~~~~L~~~~~~~i~~~~~ 311 (319)
++||+|++|+++|. +||.|..
T Consensus 341 ~~Gpvt~~L~~~~~-~iq~G~~ 361 (372)
T 3dtg_A 341 QPGEITMALRDTLT-GIQRGTF 361 (372)
T ss_dssp SCCHHHHHHHHHHH-HHHTTSS
T ss_pred CcCHHHHHHHHHHH-HHHCCCC
Confidence 99999999999998 8999854
No 15
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=100.00 E-value=7.8e-57 Score=413.83 Aligned_cols=257 Identities=22% Similarity=0.272 Sum_probs=230.6
Q ss_pred ccCCeeeCCCCceeCCCCccccccceeeeeeeeeCCeecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCC
Q 020956 29 IFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCR 108 (319)
Q Consensus 29 ~~nG~~~~~~~~~i~~~drg~~yG~gvFEt~rv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~~~~~~ 108 (319)
|.+|+++++..+.+++.|||| |||+||||++++|++++|++|++||.+||++|+++.|++.+++.+.+.++++.++ .
T Consensus 18 ~~~~~~~~~~~~~i~~~d~g~--G~gvFEtir~~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~~~~l~~~i~~~~~~~~-~ 94 (285)
T 3csw_A 18 RGKFRRADEISLDFSLFEKSL--QGAVYETLRTYSRAPFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGADEFK-Q 94 (285)
T ss_dssp TTEEEESSEEEEEHHHHHHHT--TCCEEEEEEEETTEETTHHHHHHHHHHHHHTTTCCCSSCHHHHHHHHHHHHTTCS-S
T ss_pred ccCceEcccccCEeCCccccc--ceeeEEEEEEECCEECCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhC-C
Confidence 899999999999999999999 9999999999999999999999999999999999988999999999999998776 6
Q ss_pred CceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCCcccCCCcEEEEeeeecCCCC--CCCccccccHHHHHHHHHHHHc
Q 020956 109 KGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQ--FGTVKSVNYLPNVLSKMEAEET 186 (319)
Q Consensus 109 ~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~--~~~~Kt~ny~~~~~a~~~A~~~ 186 (319)
+++||+++... + .++++.+.|.+.....+|+++.+++.++.++. ++++||+||+.+++++++|++
T Consensus 95 ~~~iR~~v~~~---------~---~~~~i~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Kt~~~l~~~la~~~A~~- 161 (285)
T 3csw_A 95 EVRIKVYLFPD---------S---GEVLFVFSPLNIPDLETGVEVKISNVRRIPDLSTPPALKITGRTDIVLARREIVD- 161 (285)
T ss_dssp CEEEEEEECTT---------T---CCEEEEEEECCCCCCTTCEEEEECSSCCCCTTTSCTTCCBTTCHHHHHHHTTCSS-
T ss_pred CeEEEEEEEcC---------C---CEEEEEEEeCCCccccCCeEEEEEeEEecCCCCCCCccchhccHHHHHHHHHHHh-
Confidence 78999999321 1 14566677765433467999998887665443 469999999999999999877
Q ss_pred CCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCC-CCcccHHHHHHHHHHHhhhhCCccceEEEEeeCHHHHhccce
Q 020956 187 GAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEE 265 (319)
Q Consensus 187 g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~-~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i~~~dL~~ade 265 (319)
+||+||+|++|+|+|++++|| |+++||+|+|||++ ++|+||||+.||++|+++ |+ +|+|+.++++||.+|||
T Consensus 162 -~de~L~ld~~G~V~Egs~sNi-f~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~~---g~--~v~E~~i~~~dL~~ade 234 (285)
T 3csw_A 162 -CYDVILLGLNGQVCEGSFSNV-FLVKEGKLITPSLDSGILDGITRENVIKLAKSL---EI--PVEERVVWVWELFEADE 234 (285)
T ss_dssp -SSEEEEECTTSBEEEESSSEE-EEEETTEEEEECGGGTCCCCHHHHHHHHHHHHT---TC--CEEEECCBHHHHHTCSE
T ss_pred -CCeEEEECCCCcEEEcCceEE-EEEECCEEEeCCCCCCccCCHHHHHHHHHHHHC---CC--eEEEEeCCHHHHhhCCE
Confidence 999999999999999999999 55699999999986 899999999999999998 87 99999999999999999
Q ss_pred eeeecccCceEEEEEECCEEeCCCCccHHHHHHHHHHHHHHHcC
Q 020956 266 MILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSG 309 (319)
Q Consensus 266 vfl~ns~~gi~pV~~id~~~~~~g~~g~~~~~L~~~~~~~i~~~ 309 (319)
+|+|||++||+||.+||++.+++|++||+|++|+++|. .++.+
T Consensus 235 vfltns~~gv~PV~~id~~~~~~g~~g~~t~~L~~~~~-~~~~~ 277 (285)
T 3csw_A 235 MFLTHTSAGVVPVRRLNEHSFFEEEPGPVTATLMENFE-PFVLN 277 (285)
T ss_dssp EEEEETTTEEEEEEEETTEESCSSSCCHHHHHHHHHHH-HHHHT
T ss_pred EEEecCcceEEEEEEECCEECCCCCCCHHHHHHHHHHH-HHHhC
Confidence 99999999999999999999998889999999999998 55555
No 16
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=100.00 E-value=4.5e-53 Score=381.11 Aligned_cols=227 Identities=25% Similarity=0.312 Sum_probs=199.6
Q ss_pred cccCCeeeCCCCceeCCCCccccc-cceeeeeeeeeCCeecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHc-
Q 020956 28 SIFGGITTDPAAMVIPMDDHMVHR-GHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSAS- 105 (319)
Q Consensus 28 ~~~nG~~~~~~~~~i~~~drg~~y-G~gvFEt~rv~~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~~~- 105 (319)
+|+||+.. +++.||||+| |||+||||++++|++++|++|++||.+||+.|+++.|++ ++|.+.+.++++.+
T Consensus 2 ~~~nG~~~------~~~~d~g~~y~G~gvFEtir~~~G~~~~l~~Hl~RL~~Sa~~l~~~~p~~-~~l~~~i~~~~~~~~ 74 (246)
T 2zgi_A 2 RLLNGTPL------ALALPEAFLYHGASVFTTLRAEGGRPLWLEEHLARLRRHALALGLSYPGD-EAFLEDLEALLRAFP 74 (246)
T ss_dssp EEETTEEC------CCSSCHHHHHSCCCEEEEEEEETTEETTHHHHHHHHHHHHHHTTCCCCCH-HHHHHHHHHHTTSCT
T ss_pred EEECCccc------CCCccCcccccCeeEEEEEEEECCEeCCHHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHhcC
Confidence 58899853 4889999999 999999999999999999999999999999999998888 99999999998876
Q ss_pred CCCCceEEEEEeecCCCcccCCCCCCccEEEEEEEeCCC---cccCCCcEEEEeeeecCCCCCCCccccccHHHHHHHHH
Q 020956 106 NCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDS---PFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKME 182 (319)
Q Consensus 106 ~~~~~~iri~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~l~~~~~~~~~~~~~~~Kt~ny~~~~~a~~~ 182 (319)
+..+++||+++++|.+.+++ .|.+. ..+.+|+++.+++. +..+.++++||+||+.+++++++
T Consensus 75 ~~~~~~vR~~v~~g~~~~~~--------------~p~~~~~~~~~~~g~~l~~~~~-r~~~~~~~~Kt~n~~~~~~a~~~ 139 (246)
T 2zgi_A 75 KAPCLRLRFTVGEGVRLSEA--------------RPYAPLPLSLYREGVRVRLTGY-RVHPDLARYKTGNYLPYRLALEE 139 (246)
T ss_dssp TCSEEEEEEEEETTEEEEEE--------------EECCCCCTHHHHHCBCEEEEEE-ECCTTTTTSCBSCCHHHHHHHHH
T ss_pred CCCCEEEEEEEECCCCccCc--------------CcCCCCchhHhhcCeEEEEecc-cCCCCCccchhhhhHHHHHHHHH
Confidence 56678999999998554332 12221 22346899998887 54333789999999999999999
Q ss_pred HHHcCCcEEEEEcCCCcEEEeccceEEEEEeCcEEEcCCCCCCcccHHHHHHHHHHHhhhhCCccceEEEEeeCHHHHhc
Q 020956 183 AEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKK 262 (319)
Q Consensus 183 A~~~g~dd~l~ld~~g~v~E~~~sNvffv~~~~~l~TP~~~~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i~~~dL~~ 262 (319)
|+++|+||+||+|++|+|+|++++|| |+++||+|+|| .++|+||||+.||++|+++ |+ +|+|+.++++||.+
T Consensus 140 A~~~g~de~l~ld~~G~v~Egs~sNi-f~v~~g~l~TP--~~iL~GitR~~ll~~a~~~---g~--~v~E~~i~~~dL~~ 211 (246)
T 2zgi_A 140 ARKEGAFEGLLLDAFGHVVDGSRTSP-LLFREGTLYLL--EGGLEGITREKVAEAARGL---GL--RVERGLFRPEGLRG 211 (246)
T ss_dssp HHTTTCSEEEEECTTSCEEEESSSEE-EEEETTEEEEE--CSSCCCHHHHHHHHHHHHT---TC--EEEEECCCGGGCCS
T ss_pred HHHcCCCEEEEECCCCCEEEcCCeEE-EEEECCEEECC--CCccCcHHHHHHHHHHHHC---CC--eEEEEeCCHHHHHh
Confidence 99999999999999999999999999 55699999999 7899999999999999998 87 99999999999998
Q ss_pred cceeeeecccCceEEEEEECCEEe
Q 020956 263 AEEMILLGSGVLVRPVVQWDEQVI 286 (319)
Q Consensus 263 adevfl~ns~~gi~pV~~id~~~~ 286 (319)
|+|+|||++||+||.+||++.+
T Consensus 212 --evfltns~~gi~pV~~id~~~~ 233 (246)
T 2zgi_A 212 --HLLLAGSGVGLLPVRPPPPELL 233 (246)
T ss_dssp --EEEEEETTTEEEEBSSCCGGGH
T ss_pred --hHeeecChhheEEEEEEChHHH
Confidence 9999999999999999997654
No 17
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=100.00 E-value=2.4e-46 Score=331.85 Aligned_cols=204 Identities=16% Similarity=0.109 Sum_probs=179.5
Q ss_pred cccceeeeeeeee-CCeecChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHcCCCCceEEEEEeecCCCcccCCC
Q 020956 50 HRGHGVFDTAAIC-DGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPV 128 (319)
Q Consensus 50 ~yG~gvFEt~rv~-~G~~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~~~~~~~~~~iri~v~~g~~~~~~~~~ 128 (319)
.-|+|+|||||++ +|++++|++|++||.+||+.|+++ ++.+++.+.+.++++ ++..+++||+++++|.
T Consensus 13 ~~g~glFEtir~~~~G~~~~l~~Hl~RL~~Sa~~l~~~--~~~~~l~~~i~~~~~-~~~~~~~iR~~~~~~g-------- 81 (221)
T 3qqm_A 13 TADFELIETMRWQPGTSFLRFDRHLARLYGSAAELGFA--CDPQRIAEVLSDALD-GARTAMRTRLALARNG-------- 81 (221)
T ss_dssp TSCCEEEEEEEEETTTEETTHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHT-TCCSCEEEEEEEETTS--------
T ss_pred CCCCEEEEEEEEecCCcCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHh-cCCCCEEEEEEEEcCC--------
Confidence 4689999999999 999999999999999999999995 589999999999987 5556789999999862
Q ss_pred CCCccEEEEEEEeCCCcccCCCcEEEEeeeecC-CCCCCCccccccHHHHHHHHHHHHcCCcEEEEEcCCCcEEEeccce
Q 020956 129 GCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIK-PPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMN 207 (319)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~-~~~~~~~Kt~ny~~~~~a~~~A~~~g~dd~l~ld~~g~v~E~~~sN 207 (319)
.+.+.+.|.+.....+|+++.+++.++. ++.++++||+||+.+++++++|+++|+||+||+|++|+|+|++++|
T Consensus 82 -----~~~i~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~Kt~nr~~~~~a~~~a~~~g~~e~l~l~~~g~v~E~s~sN 156 (221)
T 3qqm_A 82 -----DATASAQPYEPLAADKVWILRLARTRLDSQNTLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITN 156 (221)
T ss_dssp -----CEEEEEEECCCCCTTCCEEEEECSCCBCTTCGGGGSCBSCCHHHHHHHHTSCTTTCSEEEEEBTTSCEEEESSCE
T ss_pred -----CEEEEEEcCCCCCCCCCEEEEEeeeEecCCCcchhchhcchHHHHHHHHHHHhcCCcEEEEECCCCeEEEcCcee
Confidence 1344556665443457999999987764 4567899999999999999999999999999999999999999999
Q ss_pred EEEEEeC-cEEEcCCCC-CCcccHHHHHHHHHHHhhhhCCccceEEEEeeCHHHHhccceeeeecccCceEEEEE
Q 020956 208 VAFVTKE-RLLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQ 280 (319)
Q Consensus 208 vffv~~~-~~l~TP~~~-~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~ 280 (319)
|| ++++ |+|+|||++ ++|+||||+.++++ + +|+|+.++++||.+|||+|+|||++||+||+-
T Consensus 157 if-~~~~~~~l~TP~~~~~~L~GitR~~ll~~-------~---~v~e~~i~~~~L~~adevf~~ns~~gi~pV~l 220 (221)
T 3qqm_A 157 VF-ADFGDGVLATPRLDCGLLPGVLRAELLDE-------G---RAEEAIYSYDDLKSAKALFVGNSLRGLIPAKL 220 (221)
T ss_dssp EE-EECSSSCEEEECGGGTCCCCHHHHHHHHT-------T---SEEEECCCHHHHTTCSEEEEEETTTEEEEEEE
T ss_pred EE-EEeCCCEEECCCCccCcchHHHHHHHHhh-------C---cEEEEeCCHHHHHhCCEEEEEecceeEEEEEE
Confidence 94 5677 999999986 79999999999985 3 69999999999999999999999999999974
No 18
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=100.00 E-value=5.5e-43 Score=304.41 Aligned_cols=189 Identities=15% Similarity=0.121 Sum_probs=158.7
Q ss_pred cccceeeeeeeeeCCeecChHHHHHHHHHHH-HHcCCC--CCCCHHHHHHHHHHHHHHcCCCCceEEEEEeecCCCcccC
Q 020956 50 HRGHGVFDTAAICDGYLYELDQHLDRIIRSA-SMAKIQ--LPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLS 126 (319)
Q Consensus 50 ~yG~gvFEt~rv~~G~~~~l~~Hl~RL~~Sa-~~l~i~--~p~~~~~l~~~i~~l~~~~~~~~~~iri~v~~g~~~~~~~ 126 (319)
+||+|+||||++++|++++|++|++||.+|| +.++++ .|++.+++.+.+. ++++++..+++||+++++|. ...
T Consensus 2 ~~g~~vfEt~r~~~g~~~~l~~Hl~RL~~Sa~~~l~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~iR~~~~~g~--~~~- 77 (194)
T 3ceb_A 2 MWQFPLFETILIEQGQAKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHT-ALFTHREGLIRCRIDYNHHD--YVL- 77 (194)
T ss_dssp CTTCCEEEEEEEETTEECSHHHHHHHHHHHHHHHSTTCCCCCCCHHHHHHTCG-GGGSCSSSEEEEEEEECSSC--EEE-
T ss_pred CCCCeEEEEEEEECCEecCHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhhCCCCCEEEEEEEeCCc--cEE-
Confidence 6999999999999999999999999999999 999999 6799999999988 88776666789999999872 111
Q ss_pred CCCCCccEEEEEEEeCCCcccCCCcEEEEeeee-cCCCCCCCccccccHHHHHHHHHHHHcCCcEEEEEcCCCcEEEecc
Q 020956 127 PVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIP-IKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPN 205 (319)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~Kt~ny~~~~~a~~~A~~~g~dd~l~ld~~g~v~E~~~ 205 (319)
...|.++ .++ .+..+ ..++.++++||+||+ ++++.+|+++|+||+||+ ++|+|+|+++
T Consensus 78 -----------~~~p~~~----~~~---~~~~~~~~~~~~~~~Kt~n~~--~~~~~~A~~~g~de~l~l-~~G~v~E~s~ 136 (194)
T 3ceb_A 78 -----------QCFPYQQ----KVY---RTFKPVFCDHIDYSLKFSDRT--LLNNLLKQKEECDEIMII-RQGKVTDCSI 136 (194)
T ss_dssp -----------EEEEECC----CCC---CCEEEEECSSCCCSSCBSCCH--HHHHHHGGGTTSSEEEEE-ETTEECCCSS
T ss_pred -----------EEecCCC----CcE---EEEEEecCCCcchhhcccCHH--HHHHHHHhhCCCCEEEEE-eCCEEEEecc
Confidence 1112211 122 11111 124467899999998 778899999999999999 9999999999
Q ss_pred ceEEEEEeCcEEEcCCCCCCcccHHHHHHHHHHHhhhhCCccceEEEEeeCHHHHhccceeeeecccCce
Q 020956 206 MNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLV 275 (319)
Q Consensus 206 sNvffv~~~~~l~TP~~~~iL~GitR~~vl~~~~~~~~~g~~~~v~e~~i~~~dL~~adevfl~ns~~gi 275 (319)
+|| |+++||+|+||| +++|+||||+.|++ ++ +|+|+.++++||.+|||+|+|||++|+
T Consensus 137 sNi-f~~~~g~l~TP~-~~~L~GitR~~ll~--------~~--~v~e~~i~~~eL~~adevfl~ns~~gi 194 (194)
T 3ceb_A 137 GNL-IFRQNNQWITPD-KPLLEGTQRAKLLE--------QK--KIIAREIFFEDLAQYEEIRLINAMNGL 194 (194)
T ss_dssp SEE-EEEETTEEEEES-SCSSCCHHHHHHHH--------TT--SSEEECCBGGGGGGCSCEEEEBTTBCC
T ss_pred EEE-EEEECCEEECCC-CCCcChHHHHHHHc--------CC--CEEEecCCHHHHhhccEEEEEecccCC
Confidence 999 556999999999 89999999999997 33 899999999999999999999999986
No 19
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=33.69 E-value=29 Score=24.99 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=31.9
Q ss_pred HHHHhhhhCCccceEEEEeeCHHHHhccceeeeecccCceEEEEEE-CCEEeCCCCccHHHHHHHH
Q 020956 236 TLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQW-DEQVIGNGKEGPIAQALLD 300 (319)
Q Consensus 236 ~~~~~~~~~g~~~~v~e~~i~~~dL~~adevfl~ns~~gi~pV~~i-d~~~~~~g~~g~~~~~L~~ 300 (319)
+++++. |+ +.+|.++.-+.- ..+++.-.+...--+|+.-| ||..+.+.....+.++|.+
T Consensus 22 ~~L~~~---gi--~y~~idi~~d~~-~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L~e 81 (92)
T 2lqo_A 22 TALTAN---RI--AYDEVDIEHNRA-AAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKLVK 81 (92)
T ss_dssp HHHHHT---TC--CCEEEETTTCHH-HHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHHHHH
T ss_pred HHHHhc---CC--ceEEEEcCCCHH-HHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHHHH
Confidence 344555 87 899988864322 22333333334456799888 5666543233344444443
No 20
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=32.40 E-value=38 Score=25.33 Aligned_cols=82 Identities=17% Similarity=0.092 Sum_probs=46.8
Q ss_pred EcCCCCCCcccHHHHHHHH-HHHhhhhCCccceEE-------EEeeCHHHHhccceeeeecccCceEEEEEECCEEeCCC
Q 020956 218 LMPQFDKILSGCTAKRVLT-LAKALVREGKLHGIK-------VGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNG 289 (319)
Q Consensus 218 ~TP~~~~iL~GitR~~vl~-~~~~~~~~g~~~~v~-------e~~i~~~dL~~adevfl~ns~~gi~pV~~id~~~~~~g 289 (319)
+|....|+=-..+-...|+ .|+++ |+.++|+ +-.++.+|+.+||-+++.+.. .+- -..++|+++-..
T Consensus 8 VTaCptGiAhTymAaeaL~~aA~~~---G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~-~v~-~~RF~GK~v~~~ 82 (106)
T 2r48_A 8 ITSCPNGIAHTYMAAENLQKAADRL---GVSIKVETQGGIGVENKLTEEEIREADAIIIAADR-SVN-KDRFIGKKLLSV 82 (106)
T ss_dssp EEECSSCSHHHHHHHHHHHHHHHHH---TCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS-CCC-CGGGTTSBEEEE
T ss_pred EecCCCcHHHHHHHHHHHHHHHHHC---CCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC-ccC-HhHcCCCeEEEe
Confidence 3433345555555555554 56677 8744453 235899999999999988873 333 445666654322
Q ss_pred CccHHHHHHHHHHHH
Q 020956 290 KEGPIAQALLDLILE 304 (319)
Q Consensus 290 ~~g~~~~~L~~~~~~ 304 (319)
......+.=.+.+.+
T Consensus 83 ~v~~ai~~p~~~l~~ 97 (106)
T 2r48_A 83 GVQDGIRKPEELIQK 97 (106)
T ss_dssp CHHHHHHCHHHHHHH
T ss_pred CHHHHHHCHHHHHHH
Confidence 234444444444443
No 21
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=31.54 E-value=60 Score=24.24 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=46.5
Q ss_pred EcCCCCCCcccHHHHHHHH-HHHhhhhCCccceEEE-------EeeCHHHHhccceeeeecccCceEEEEEECCEEeCCC
Q 020956 218 LMPQFDKILSGCTAKRVLT-LAKALVREGKLHGIKV-------GNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNG 289 (319)
Q Consensus 218 ~TP~~~~iL~GitR~~vl~-~~~~~~~~g~~~~v~e-------~~i~~~dL~~adevfl~ns~~gi~pV~~id~~~~~~g 289 (319)
+|....|+=-..+-...|+ .|+++ |+.++|+- -.++.+|+.+||-+++.+.. .+- -..++|+++-..
T Consensus 8 VTaCptGiAhTymAaeaL~~aA~~~---G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~-~v~-~~RF~GK~v~~~ 82 (106)
T 2r4q_A 8 VTACPTGIAHTFMAADALKEKAKEL---GVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADK-QVE-MERFKGKRVLQV 82 (106)
T ss_dssp EEECSCC--CHHHHHHHHHHHHHHH---TCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESS-CCC-CGGGTTSBEEEE
T ss_pred EecCCCcHHHHHHHHHHHHHHHHHC---CCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCC-ccC-HhHcCCCeEEEe
Confidence 4443346655666555555 56677 87445532 35899999999999988873 333 445666654322
Q ss_pred CccHHHHHHHHHHH
Q 020956 290 KEGPIAQALLDLIL 303 (319)
Q Consensus 290 ~~g~~~~~L~~~~~ 303 (319)
......+.=.+.+.
T Consensus 83 ~v~~ai~~p~~~l~ 96 (106)
T 2r4q_A 83 PVTAGIRRPQELIE 96 (106)
T ss_dssp CHHHHHHCHHHHHH
T ss_pred CHHHHHHCHHHHHH
Confidence 23444444444444
No 22
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=29.06 E-value=1.1e+02 Score=22.69 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHhhhhCCccceEEEEee---CHHHHhccceeeeecccC
Q 020956 228 GCTAKRVLTLAKALVREGKLHGIKVGNV---TVEEGKKAEEMILLGSGV 273 (319)
Q Consensus 228 GitR~~vl~~~~~~~~~g~~~~v~e~~i---~~~dL~~adevfl~ns~~ 273 (319)
|.|++..-.+++.+...|+ +++.-++ ..+++.++|-+++.+++.
T Consensus 11 GnT~~~a~~i~~~l~~~g~--~v~~~~~~~~~~~~l~~~d~vi~g~p~y 57 (137)
T 2fz5_A 11 GNTEAMANEIEAAVKAAGA--DVESVRFEDTNVDDVASKDVILLGCPAM 57 (137)
T ss_dssp SHHHHHHHHHHHHHHHTTC--CEEEEETTSCCHHHHHTCSEEEEECCCB
T ss_pred ChHHHHHHHHHHHHHhCCC--eEEEEEcccCCHHHHhcCCEEEEEcccc
Confidence 8898877666665543465 6665544 467899999988887774
No 23
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=24.96 E-value=75 Score=23.91 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=29.9
Q ss_pred CCcccHHHHHHH-HHHHhhhhCCccceEE-------EEeeCHHHHhccceeeeeccc
Q 020956 224 KILSGCTAKRVL-TLAKALVREGKLHGIK-------VGNVTVEEGKKAEEMILLGSG 272 (319)
Q Consensus 224 ~iL~GitR~~vl-~~~~~~~~~g~~~~v~-------e~~i~~~dL~~adevfl~ns~ 272 (319)
|+--..+-...| ..|+++ |+.++|+ +-.++.+|+.+||-+++.+..
T Consensus 17 GiAHTyMAAeaL~~aA~~~---G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 17 GLAHTFMAAQALEEAAVEA---GYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAV 70 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHT---SSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESS
T ss_pred cHHHHHHHHHHHHHHHHHC---CCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCC
Confidence 433333333333 456677 8844453 347899999999999988874
No 24
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=23.38 E-value=46 Score=18.29 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=13.8
Q ss_pred CcEEEeccceEEEEEeCcEEE
Q 020956 198 GFIAEGPNMNVAFVTKERLLL 218 (319)
Q Consensus 198 g~v~E~~~sNvffv~~~~~l~ 218 (319)
|++.|+...-.+.+.++|.|+
T Consensus 1 ~~i~eAP~Dg~~Yvr~dg~WV 21 (27)
T 2ww6_A 1 GYIPEAPRDAQAYVRKFGEWV 21 (27)
T ss_dssp CBCBCCCSSSCEEEEETTEEE
T ss_pred CCCccCCcCcceeEEEcCeEE
Confidence 345556555556777888876
No 25
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.99 E-value=1.2e+02 Score=22.71 Aligned_cols=45 Identities=29% Similarity=0.359 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHhhhhCCccceEEEEee---CHHHHhccceeeeecccCc
Q 020956 228 GCTAKRVLTLAKALVREGKLHGIKVGNV---TVEEGKKAEEMILLGSGVL 274 (319)
Q Consensus 228 GitR~~vl~~~~~~~~~g~~~~v~e~~i---~~~dL~~adevfl~ns~~g 274 (319)
|.|++..-.+++.+...|+ +++..++ ..++|.++|-+++.+++.+
T Consensus 10 GnT~~iA~~ia~~l~~~g~--~v~~~~~~~~~~~~l~~~d~iiig~pty~ 57 (138)
T 5nul_A 10 GNTEKMAELIAKGIIESGK--DVNTINVSDVNIDELLNEDILILGCSAMT 57 (138)
T ss_dssp SHHHHHHHHHHHHHHHTTC--CCEEEEGGGCCHHHHTTCSEEEEEECCBT
T ss_pred chHHHHHHHHHHHHHHCCC--eEEEEEhhhCCHHHHhhCCEEEEEcCccC
Confidence 7898877777666544475 6665444 5678999998888777654
No 26
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=21.92 E-value=1.1e+02 Score=20.59 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=26.4
Q ss_pred HHHHHHHcCCCCC---CCHHHHHHHHHHHHHHcC
Q 020956 76 IIRSASMAKIQLP---FDRKSLRRILIQTVSASN 106 (319)
Q Consensus 76 L~~Sa~~l~i~~p---~~~~~l~~~i~~l~~~~~ 106 (319)
+..++..||++.. .+.+++++.-+.+...|.
T Consensus 3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nh 36 (65)
T 2guz_B 3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVND 36 (65)
T ss_dssp HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhC
Confidence 3577889999876 799999999999998875
Done!