RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 020956
(319 letters)
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 556 bits (1436), Expect = 0.0
Identities = 213/316 (67%), Positives = 249/316 (78%), Gaps = 2/316 (0%)
Query: 5 AIERIKSTQANQKSKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDG 64
I+R++S + KQ F AMYSS+ GGITTDPAAMVIP+DDHMVHRGHGVFDTA I DG
Sbjct: 21 MIQRLQSK-WSDAKKQNFGAMYSSVVGGITTDPAAMVIPLDDHMVHRGHGVFDTATIRDG 79
Query: 65 YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQ 124
+LYELD HLDR +RSA+ AKI LPFDR +LRRIL+QTV+AS CR GSLRYWLSAG G F
Sbjct: 80 HLYELDAHLDRFLRSAAKAKIPLPFDRATLRRILLQTVAASGCRNGSLRYWLSAGPGGFS 139
Query: 125 LSPVGCHQSTFYVIVIQDDSPFV-SKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEA 183
LSP GC + FY +VI+D +GVKV+TSS+PIKPPQF TVKSVNYLPN LS+MEA
Sbjct: 140 LSPSGCSEPAFYAVVIEDTYAQDRPEGVKVVTSSVPIKPPQFATVKSVNYLPNALSQMEA 199
Query: 184 EETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVR 243
EE GAFA IWLD EGF+AEGPNMNVAF+T + L++P FDKILSGCTA+RVL LA LV
Sbjct: 200 EERGAFAGIWLDEEGFVAEGPNMNVAFLTNDGELVLPPFDKILSGCTARRVLELAPRLVS 259
Query: 244 EGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLIL 303
G L G+K ++VEE K A+EM+L+GSGV V P+V WD Q IG+GK GPI AL DL+L
Sbjct: 260 PGDLRGVKQRKISVEEAKAADEMMLIGSGVPVLPIVSWDGQPIGDGKVGPITLALHDLLL 319
Query: 304 EDMQSGPPTVRVAVPY 319
+DM+SGPP VR VPY
Sbjct: 320 DDMRSGPPGVRTPVPY 335
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 205 bits (525), Expect = 3e-65
Identities = 95/264 (35%), Positives = 138/264 (52%), Gaps = 15/264 (5%)
Query: 46 DHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSAS 105
D +H G GVF+ G L+ LD+HLDR+ RSA + +P+DR+ LR L + V+A+
Sbjct: 1 DRGLHYGDGVFEGLRAGKGRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVAAN 60
Query: 106 NCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQ--DDSPFVSKGVKVITSSIPIKPP 163
N +R L+ GVG ++P + TF V + KGV++ITS +
Sbjct: 61 NGASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLITSPDRRRAA 120
Query: 164 QFGT--VKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQ 221
GT K+ L +VL+K EA E GA A+ LD G++ EG NV V L+ P
Sbjct: 121 PGGTGDAKTGGNLNSVLAKQEAAEAGADEALLLDDNGYVTEGSASNVFIVKDGELVT-PP 179
Query: 222 FD-KILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLVRPV 278
D IL G T V+ LAK L GIKV ++++E A+E+ L G+ V PV
Sbjct: 180 LDGGILPGITRDSVIELAKEL-------GIKVEERPISLDELYAADEVFLTGTAAEVTPV 232
Query: 279 VQWDEQVIGNGKEGPIAQALLDLI 302
+ D + IG+GK GP+ + L +L+
Sbjct: 233 TEIDGRGIGDGKPGPVTRKLRELL 256
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 199 bits (509), Expect = 5e-63
Identities = 88/260 (33%), Positives = 134/260 (51%), Gaps = 14/260 (5%)
Query: 46 DHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLP-FDRKSLRRILIQTVSA 104
D G GVF+T DG L+ LD HL R+ RSA ++ +P D LR L ++A
Sbjct: 1 DRGFAYGDGVFETMRALDGRLFLLDAHLARLERSA--RRLGIPEPDLPRLRAALESLLAA 58
Query: 105 SNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPI-KPP 163
++ +G +R LS G G +P C YV VI + GV++IT + + + P
Sbjct: 59 NDIDEGRIRLILSRGPGGRGYAPSVCPGPALYVSVIPLPPAWRQDGVRLITCPVRLGEQP 118
Query: 164 QFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD 223
+K +NYL NVL+K EA + GA A++LD +G + EG N+ FV L+ P D
Sbjct: 119 LLAGLKHLNYLENVLAKREARDRGADEALFLDTDGRVIEGTASNLFFVKDGELVT-PSLD 177
Query: 224 K-ILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWD 282
+ L+G T +RV+ LA A K + + + +E+ A+E L S + V PV D
Sbjct: 178 RGGLAGITRQRVIELAAA-----KGYAVDERPLRLEDLLAADEAFLTNSLLGVAPVTAID 232
Query: 283 EQVIGNGKEGPIAQALLDLI 302
+ +G GP+ +AL +L+
Sbjct: 233 D---HDGPPGPLTRALRELL 249
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 173 bits (440), Expect = 2e-52
Identities = 86/266 (32%), Positives = 135/266 (50%), Gaps = 16/266 (6%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
+ + D G GV++ + +G + LD+HLDR+ RSA +I +P+ R+ L+ ++ +
Sbjct: 14 VSVFDRGFLFGDGVYEVIRVYNGKPFALDEHLDRLYRSAKELRIDIPYTREELKELIREL 73
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQ---DDSPFVSKGVKVITSS- 157
V+ + +G + ++ GVG C + T +I + + KGV+VIT
Sbjct: 74 VAKNEGGEGDVYIQVTRGVGPRGHDFPKCVKPTVVIITQPLPLPPAELLEKGVRVITVPD 133
Query: 158 IPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLL 217
I +KS+N L NVL+K EA+E GA AI LD +G + EG + NV V L+
Sbjct: 134 IRWLRCD---IKSLNLLNNVLAKQEAKEAGADEAILLDADGLVTEGSSSNVFIVKNGVLV 190
Query: 218 LMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLV 275
P + IL G T V+ LAK GI V ++EE A+E+ L + V
Sbjct: 191 TPPLDNGILPGITRATVIELAKE-------LGIPVEERPFSLEELYTADEVFLTSTTAEV 243
Query: 276 RPVVQWDEQVIGNGKEGPIAQALLDL 301
PVV+ D + IG+GK GP+ + L +
Sbjct: 244 MPVVEIDGRPIGDGKPGPVTKRLREA 269
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 143 bits (363), Expect = 6e-41
Identities = 82/272 (30%), Positives = 130/272 (47%), Gaps = 20/272 (7%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
+ + D +H G GVF+T +G L+ LD+HL R+ RSA + P + + ++
Sbjct: 18 LSVLDRGLHYGDGVFETLRAYNGKLFRLDEHLARLKRSAKRLGLPRPESEEEIELLIQLL 77
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQ----DDSPFVSKGVKVITSS 157
++ +N G L G G L + T V + KGV ++ SS
Sbjct: 78 LAKNNLVPGLYIRPLVRGGGGG-LGVRDATEPTLIVAASPVGAYLKGGRLEKGVVLVISS 136
Query: 158 IPIKPPQ--FGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKER 215
+ P K+ NYL +VL+K EA+ GA A+ LD +G++ EG NV FV +
Sbjct: 137 PVRRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEALLLDEDGYVTEGAGSNVFFVKGDG 196
Query: 216 LLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSG 272
+L+ P IL G T +L LAK L G+ V +T+E+ K+A+E+ L +
Sbjct: 197 VLVTPPLSGGILPGITRDSLLELAKEL-------GLTVEERPITLEDLKQADEVFLTNTA 249
Query: 273 VLVRPVVQWDEQVIGNGKEGPIAQALLDLILE 304
V PV D +V G+ GP+ + L +L+ +
Sbjct: 250 AGVTPVGLIDGRV---GQPGPVTKKLRELLTD 278
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 136 bits (344), Expect = 8e-39
Identities = 77/239 (32%), Positives = 112/239 (46%), Gaps = 15/239 (6%)
Query: 69 LDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRK-GSLRYWLSAGVGDFQLSP 127
LD+HL+R+ RSA I LP + LR+I+ + + A+ G LR +S G G LSP
Sbjct: 3 LDEHLERLRRSAKAL-IGLPLSIEDLRKIIQELLEANGPAGSGRLRILVSRGDGGRGLSP 61
Query: 128 VGCHQSTFYVIVIQDDSPFVS--KGVKVITSSIPIKPPQFGTVKSVNYLPNVL-SKMEAE 184
++ S VK+ SS P+ P K+ NYL NVL + AE
Sbjct: 62 PEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPVPRP-LAGHKTTNYLDNVLAALRAAE 120
Query: 185 ETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDK-ILSGCTAKRVLTLAKALVR 243
G A+ LD +G + EG N+ V L P + IL G T + +L LAK L
Sbjct: 121 RAGFDDALLLDEDGNVTEGSTSNIFIVKGGTLYT-PPLESGILPGITRQALLDLAKELGI 179
Query: 244 EGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDLI 302
E ++ +T+ + ++A+E L S V PV D ++ GN GPI L +L+
Sbjct: 180 E-----VEERPLTLADLQEADEAFLTNSLRGVTPVTSIDGRIFGN--PGPITAKLRELL 231
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 133 bits (338), Expect = 4e-37
Identities = 89/272 (32%), Positives = 132/272 (48%), Gaps = 25/272 (9%)
Query: 42 IPMDDHMVH---RGH----GVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSL 94
+ + VH RG G+++ A+ DG L +LD+HL R+ RS +I P R L
Sbjct: 12 VNHREARVHIEDRGFQFADGIYEVCAVRDGKLVDLDRHLARLFRSLGEIRIAPPMTRAEL 71
Query: 95 RRILIQTVSASNCRKGSLRYWLSAGVG--DFQLSPVGCHQSTFYVIVIQD---DSPFVSK 149
+L + + + R+G + ++ GV D S D +
Sbjct: 72 VEVLRELIRRNRVREGLVYLQVTRGVARRDHVFPAADVKPSVVVFAKSVDFARPAAAAET 131
Query: 150 GVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVA 209
G+KVIT +P + +KSV LPNVL+K A+E GA A +D +GF+ EG + N
Sbjct: 132 GIKVIT--VPDNRWKRCDIKSVGLLPNVLAKQAAKEAGAQEAWMVD-DGFVTEGASSNAW 188
Query: 210 FVTKE-RLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVG--NVTVEEGKKAEEM 266
VTK+ +L+ P + IL G T ++ LAK L G++V T++E A E
Sbjct: 189 IVTKDGKLVTRPADNFILPGITRHTLIDLAKEL-------GLEVEERPFTLQEAYAAREA 241
Query: 267 ILLGSGVLVRPVVQWDEQVIGNGKEGPIAQAL 298
+ + V PVVQ D + IGNGK GPIA+ L
Sbjct: 242 FITAASSFVFPVVQIDGKQIGNGKPGPIAKRL 273
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 130 bits (330), Expect = 6e-36
Identities = 92/263 (34%), Positives = 138/263 (52%), Gaps = 18/263 (6%)
Query: 46 DHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSAS 105
DH G GVF+ +G ++ L +H+DR+ SA +++P ++ + I+++T+ +
Sbjct: 23 DHGFLYGDGVFEGIRAYNGRVFRLKEHIDRLYDSAKAIMLEIPLSKEEMTEIVLETLRKN 82
Query: 106 NCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDD-----SPFVSKGVKVITSSIPI 160
N R +R +S GVGD L P C + T V+ I + KG+KVIT S
Sbjct: 83 NLRDAYIRLVVSRGVGDLGLDPRKCPKPT--VVCIAEPIGLYPGELYEKGLKVITVSTRR 140
Query: 161 KPPQF--GTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLL 218
P VKS+NYL N+L+K+EA G AI L+ EG++AEG N+ V +L+
Sbjct: 141 NRPDALSPQVKSLNYLNNILAKIEANLAGVDEAIMLNDEGYVAEGTGDNIFIVKNGKLIT 200
Query: 219 MPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLVR 276
P + L G T V+ +AK L GI V T+ + A+E+ L G+ V
Sbjct: 201 PPTYAGALEGITRNAVIEIAKEL-------GIPVREELFTLHDLYTADEVFLTGTAAEVI 253
Query: 277 PVVQWDEQVIGNGKEGPIAQALL 299
PVV+ D +VIG+GK GPI + LL
Sbjct: 254 PVVKVDGRVIGDGKPGPITKKLL 276
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 120 bits (304), Expect = 3e-32
Identities = 81/293 (27%), Positives = 123/293 (41%), Gaps = 40/293 (13%)
Query: 42 IPMDDHMVHRGHGVFD-----TAAICDGYLYELDQHLDRIIRSASMAKIQLP-FDRKSLR 95
+ H +H G VF+ L+ D++ +R+ RSA ++ LP F +
Sbjct: 2 LHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSA--RRLGLPPFSVEEFI 59
Query: 96 RILIQTVSASNC-----RKGSL--R--YWLSAGVGDFQLSPVGCHQSTFYVIVIQ--DDS 144
+ + V SL R + D QL + F V
Sbjct: 60 DAIKELVKLDADWVPYGGGASLYIRPFIF----GTDPQLGVSPALEYLFAVFASPVGAYF 115
Query: 145 PFVSKGVKVITSSIPIKPPQFGTVK---SVNYLPNVLSKMEAEETGAFAAIWLDGE-GFI 200
KGV + SS + G NY ++L++ EA E G A+WLDG G++
Sbjct: 116 KGGEKGVSALVSS-FRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDGAHGYV 174
Query: 201 AEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVE 258
AE MN+ FV L+ P IL G T +L LA+ L GIKV +T +
Sbjct: 175 AEVGTMNIFFVKDGELITPPLDGSILPGITRDSILELARDL-------GIKVEERPITRD 227
Query: 259 EGKKAEEMILLGSGVLVRPV--VQWDEQVIGNGKEGPIAQALLDLILEDMQSG 309
E +A+E+ G+ +V PV + + + G G+ GP+ + L DL L D+Q G
Sbjct: 228 ELYEADEVFATGTAAVVTPVGEIDYRGKEPGEGEVGPVTKKLYDL-LTDIQYG 279
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 120 bits (304), Expect = 3e-32
Identities = 78/269 (28%), Positives = 128/269 (47%), Gaps = 22/269 (8%)
Query: 46 DHMVHRGHGVFDTAAICDG----YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
H +H G GVF+ D ++ L +H+ R+ SA + ++++P+ ++ L +T
Sbjct: 18 THALHYGTGVFEGIRAYDTDKGPAIFRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRET 77
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQ----DDSPFVSKGVKVITSS 157
+ +N R +R + G GD L+P ++ + + KG+ SS
Sbjct: 78 LRKNNLRSAYIRPLVFRGDGDLGLNPRAGYKPDVIIAAWPWGAYLGEEALEKGIDAKVSS 137
Query: 158 IPIKPPQF--GTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKE 214
P K+ NYL ++L+K EA G AI LD EG++AEG N+ F+ K+
Sbjct: 138 WRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDVEGYVAEGSGENI-FIVKD 196
Query: 215 RLLLMPQF-DKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGS 271
+L P IL G T V+TLAK L GI+V ++ EE A+E G+
Sbjct: 197 GVLFTPPVTSSILPGITRDTVITLAKEL-------GIEVVEQPISREELYTADEAFFTGT 249
Query: 272 GVLVRPVVQWDEQVIGNGKEGPIAQALLD 300
+ P+ + D + IGNG+ GP+ + L +
Sbjct: 250 AAEITPIREVDGRKIGNGRRGPVTKKLQE 278
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 108 bits (271), Expect = 2e-27
Identities = 78/292 (26%), Positives = 131/292 (44%), Gaps = 23/292 (7%)
Query: 18 SKQQFLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRII 77
Q++ M G + V+ + DH G GVF+ G ++ L +H+ R+
Sbjct: 1 MGNQYIYM-----NGEFVEKEKAVVSVYDHGFLYGDGVFEGIRSYGGNVFCLKEHVKRLY 55
Query: 78 RSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYV 137
SA + +P + ++QT+ + +R +S G GD L P C + + V
Sbjct: 56 ESAKSILLTIPLTVDEMEEAVLQTLQKNEYADAYIRLIVSRGKGDLGLDPRSCVKPS--V 113
Query: 138 IVIQDD-----SPFVSKGVKVITSSIPIKPPQF--GTVKSVNYLPNVLSKMEAEETGAFA 190
I+I + F G+ V++ + P +KS+NYL NVL K+EA + G
Sbjct: 114 IIIAEQLKLFPQEFYDNGLSVVSVASRRNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLE 173
Query: 191 AIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGI 250
A+ L+ +G++ EG NV V ++L P + L G T V+ L + L I
Sbjct: 174 ALMLNQQGYVCEGSGDNVFVVKDGKVLTPPSYLGALEGITRNSVIELCERL-------SI 226
Query: 251 KVGN--VTVEEGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLD 300
T + A+E+ L G+ + PVV+ D + IG+GK G + + L +
Sbjct: 227 PCEERPFTRHDVYVADEVFLTGTAAELIPVVKVDSREIGDGKPGSVTKQLTE 278
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 104 bits (262), Expect = 5e-26
Identities = 78/280 (27%), Positives = 129/280 (46%), Gaps = 51/280 (18%)
Query: 47 HMVHRGHGVF------DTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQ 100
H +H G GVF DT ++ L +H R+ SA + ++++P+ L +
Sbjct: 28 HALHYGTGVFEGIRAYDTPK--GPAIFRLREHTKRLFNSAKILRMEIPYSVDELMEAQRE 85
Query: 101 TVSASNCRKGSLR--YWLSAGVGDFQLSPVGCHQSTFYVIV--------IQDDSPFVSKG 150
V +N + +R ++ + P G V + + +++ + KG
Sbjct: 86 VVRKNNLKSAYIRPLVFVGDEG--LGVRPHGL---PTDVAIAAWPWGAYLGEEA--LEKG 138
Query: 151 VKVITSS--------IPIKPPQFGTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGEGFIA 201
++V SS IP + K+ NYL ++L+K EA G A+ LD EG+++
Sbjct: 139 IRVKVSSWTRHAPNSIPTR------AKASGNYLNSILAKTEARRNGYDEALLLDVEGYVS 192
Query: 202 EGPNMNVAFVTKERLLLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVG--NVTVE 258
EG N+ F+ ++ +L P IL G T V+TLAK L GI+V +T +
Sbjct: 193 EGSGENI-FIVRDGVLYTPPLTSSILEGITRDTVITLAKDL-------GIEVIERRITRD 244
Query: 259 EGKKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQAL 298
E A+E+ G+ V P+ + D + IGNGK GPI + L
Sbjct: 245 ELYIADEVFFTGTAAEVTPIREVDGRQIGNGKRGPITEKL 284
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 101 bits (253), Expect = 5e-25
Identities = 78/256 (30%), Positives = 128/256 (50%), Gaps = 23/256 (8%)
Query: 52 GHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGS 111
G GV++ + +G L+ +++H+DR+ SA+ +I +P+ ++ L ++L + V +N G
Sbjct: 26 GDGVYEVIRVYNGKLFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELVEKNNLNTGH 85
Query: 112 LRYWLSAGV-------GDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQ 164
+ + ++ GV + PV T Y + + KGVK IT I+ +
Sbjct: 86 VYFQVTRGVAPRNHQFPAGTVKPV----ITAYTKEVPRPEENLEKGVKAITVE-DIRWLR 140
Query: 165 FGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDK 224
+KS+N L NVL+K EA E GA+ AI G G + EG + NV + L P +
Sbjct: 141 C-DIKSLNLLGNVLAKQEAHEKGAYEAILHRG-GTVTEGSSSNVYGIKDGVLYTHPANNL 198
Query: 225 ILSGCTAKRVLTLAKALVREGKLHGIKVGN--VTVEEGKKAEEMILLGSGVLVRPVVQWD 282
IL+G T +L A+ +GI V T EE A+E+ + + + PV++ D
Sbjct: 199 ILNGITRMVILACAEE-------NGIPVKEEPFTKEELLNADEVFVSSTTAEITPVIEID 251
Query: 283 EQVIGNGKEGPIAQAL 298
Q IG+GK GP + L
Sbjct: 252 GQQIGDGKPGPWTRQL 267
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 81.6 bits (202), Expect = 7e-18
Identities = 72/273 (26%), Positives = 118/273 (43%), Gaps = 45/273 (16%)
Query: 46 DHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSAS 105
DH G GVF+T I +G+ + LD H DR+ + +I+ + + IL + +
Sbjct: 20 DHGYLYGLGVFETFRIYNGHPFLLDDHYDRLNDALDTLQIEWTMTKDEVLLILKNLLEKN 79
Query: 106 NCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQF 165
+R+ +SAG+G+ L + T VIV ++ P+ PP
Sbjct: 80 GLENAYVRFNVSAGIGEIGLQTEMYEEPT--VIV------YMK----------PLAPPGL 121
Query: 166 -----GTV--------------KSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNM 206
G V KS +YL N+L K E I+L EG++AEG
Sbjct: 122 PAEKEGVVLKQRRNTPEGAFRLKSHHYLNNILGKREIGNDPNKEGIFLTEEGYVAEGIVS 181
Query: 207 NVAFVTKERLLLMPQFDK-ILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEE 265
N+ +V K ++ P + IL+G T V+ + + L E +K G T EE A+E
Sbjct: 182 NLFWV-KGDIVYTPSLETGILNGITRAFVIKVLEELGIE-----VKEGFYTKEELLSADE 235
Query: 266 MILLGSGVLVRPVVQWDEQVIGNGKEGPIAQAL 298
+ + S + P+ + +E+ GK G + + L
Sbjct: 236 VFVTNSIQEIVPLTRIEERDFP-GKVGMVTKRL 267
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 81.2 bits (201), Expect = 1e-17
Identities = 70/267 (26%), Positives = 106/267 (39%), Gaps = 41/267 (15%)
Query: 36 DPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLR 95
DP+A ++ DD RG GVF+T + DG L+ HL+R+ RSA++ + P D R
Sbjct: 22 DPSAPLLHADDLAAVRGDGVFETLLVRDGRPCNLEAHLERLARSAALLDLPEP-DLDRWR 80
Query: 96 RILIQTVSA---SNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSK--- 149
R ++ + + +LR S G G T +V V SP +
Sbjct: 81 R-AVELAIEEWRAPEDEAALRLVYSRGR-----ESGG--APTAWVTV----SPVPERVAR 128
Query: 150 ----GVKVITSSI--PIK-----PPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEG 198
GV VIT P P K+++Y N+ + A GA I+ +G
Sbjct: 129 ARREGVSVITLDRGYPSDAAERAPWLLAGAKTLSYAVNMAALRYAARRGADDVIFTSTDG 188
Query: 199 FIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKAL---VREGKLHGIKVGNV 255
++ EGP V T +RLL P + IL G T + +A+ L
Sbjct: 189 YVLEGPTSTVVIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRAL-------- 240
Query: 256 TVEEGKKAEEMILLGSGVLVRPVVQWD 282
+ A+ + L+ S L V D
Sbjct: 241 RPADLFAADGVWLVSSVRLAARVHTLD 267
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 80.4 bits (198), Expect = 2e-17
Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 29/278 (10%)
Query: 33 ITTDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRK 92
I T I +++ + G GV++ + G + LD H+ R+ RS ++ LPF +
Sbjct: 14 IDTTKQKTYIELEERGLQFGDGVYEVIRLYKGNFHLLDPHITRLYRSMEEIELTLPFSKA 73
Query: 93 SLRRILIQTVSASNCRK-GSLRYWLSAGVG------DFQLSPVGCHQSTFYVIVIQDDSP 145
L +L + + +N + G++ +S GV + + P T Y + + + P
Sbjct: 74 ELITLLYKLIENNNFHEDGTIYLQVSRGVQARTHTFSYDVPP------TIYAYITKKERP 127
Query: 146 --FVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEG 203
++ GV+ I+ P +KS+N LPN+L+ +AE G A+++ G + EG
Sbjct: 128 ALWIEYGVRAISE--PDTRWLRCDIKSLNLLPNILAATKAERKGCKEALFVR-NGTVTEG 184
Query: 204 PNMNVAFVTKERLLLMPQFDKILSGCTAKRVLTLAKAL---VREGKLHGIKVGNVTVEEG 260
+ N + L P IL+G + VL+LAK L V+E +V +
Sbjct: 185 SHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAKTLRIPVQEELF--------SVRDV 236
Query: 261 KKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQAL 298
+A+E G+ + + P+ D I +G+ GPI + L
Sbjct: 237 YQADECFFTGTTIEILPMTHLDGTAIQDGQVGPITKML 274
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 75.3 bits (186), Expect = 1e-15
Identities = 72/255 (28%), Positives = 111/255 (43%), Gaps = 26/255 (10%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
I + D + G G F TA + +G + LD HL+R+ +A+ I LP D +LR + Q
Sbjct: 10 ISVSDRGLQYGDGCFTTAKVRNGKIELLDLHLERLQDAAARLGIPLP-DWDALREEMAQ- 67
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSP-----FVSKGVKVITS 156
A+ G L+ +S G G SP GC T I+ P + +G+++ S
Sbjct: 68 -LAAGYSLGVLKVIISRGSGGRGYSPPGCSDPT--RIISVSPYPAHYSAWQQQGIRLGVS 124
Query: 157 SIPI-KPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKER 215
+ + + P +K +N L VL K E E + A A+ LD +G + E N+ + +
Sbjct: 125 PVRLGRNPLLAGIKHLNRLEQVLIKAELENSEADEALVLDTDGNVVECTAANIFWRKGNQ 184
Query: 216 LLLMPQFDKILSGCTAK-----RVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLG 270
+ F LS C VL L AL E I+ +EE A+E+ +
Sbjct: 185 V-----FTPDLSYCGVAGVMRQHVLALLPALGYE-----IEEVKAGLEELLSADEVFITN 234
Query: 271 SGVLVRPVVQWDEQV 285
S + V PV E
Sbjct: 235 SLMGVVPVNAIGETS 249
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 60.9 bits (148), Expect = 1e-10
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 21/151 (13%)
Query: 172 NYLPNVLSKMEAEETGAFAAIWLD--GEGFIAEGPNMNVAFVTKE-RLLLMPQFDKILSG 228
NY ++L++ +A E G ++LD +I E MN F+T + L+ P IL G
Sbjct: 159 NYAASLLAQAKAAEQGCDQVVYLDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPG 218
Query: 229 CTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKA----EEMILLGSGVLVRPVVQW- 281
T +L LAK L G++V + ++E K EE+ G+ ++ PV +
Sbjct: 219 ITRDSLLQLAKDL-------GMEVEERRIDIDELKAFVEAGEEVFACGTAAVITPVGEIQ 271
Query: 282 ---DEQVIGNGKEGPIAQALLDLILEDMQSG 309
E V +G+ G + +AL D + D+Q G
Sbjct: 272 HGGKEVVFASGQPGEVTKALYDELT-DIQYG 301
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 59.2 bits (144), Expect = 4e-10
Identities = 65/269 (24%), Positives = 112/269 (41%), Gaps = 33/269 (12%)
Query: 47 HMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASN 106
H +H VF+ G +++L +H +R+ RSA + ++P+ + +T++A+
Sbjct: 30 HGLHYASSVFEGERAYGGKIFKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETLAANG 89
Query: 107 CRKGSLR--YWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVS------KGVKVITSSI 158
+R W G + V Q+ ++ + + P KG+++ +
Sbjct: 90 LTDAYVRPVAWR----GSEMMG-VSAQQNKIHLAIAAWEWPSYFDPEAKMKGIRLDIAKW 144
Query: 159 PIKPPQFGTVKSVN---YLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKER 215
P+ + Y+ +SK AE G A+ LD G++AE N+ FV K+
Sbjct: 145 RRPDPETAPSAAKAAGLYMICTISKHAAEAKGYADALMLDYRGYVAEATGANIFFV-KDG 203
Query: 216 LLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKVGNVTV--EEGKKAEEMILLGSGV 273
++ P D L G T + V+ LAK GI+V + EE E L G+
Sbjct: 204 VIHTPTPDCFLDGITRQTVIELAKR-------RGIEVVERHIMPEELAGFSECFLTGTAA 256
Query: 274 LVRPVVQWDEQVIG--NGKEGPIAQALLD 300
V PV + IG G I + L+D
Sbjct: 257 EVTPVSE-----IGEYRFTPGAITRDLMD 280
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 58.7 bits (143), Expect = 5e-10
Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 26/245 (10%)
Query: 52 GHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGS 111
G G F TA + DG + L +HL R+ + I L D L + + Q A+ G
Sbjct: 22 GDGCFTTARVRDGQVSLLSRHLQRLQDACERLAIPLD-DWAQLEQEMKQ--LAAELENGV 78
Query: 112 LRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVS-------KGVKVITSSIPI-KPP 163
L+ +S G G SP GC T I+ SP+ + +G+ + + + P
Sbjct: 79 LKVIISRGSGGRGYSPAGCAAPT--RILSV--SPYPAHYSRWREQGITLALCPTRLGRNP 134
Query: 164 QFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD 223
+K +N L VL + E E+T A A+ LD EG++ E N+ F K ++ P D
Sbjct: 135 LLAGIKHLNRLEQVLIRAELEQTEADEALVLDSEGWVIECCAANL-FWRKGGVVYTPDLD 193
Query: 224 KI-LSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLVRPVVQ 280
+ ++G + +L L G V + ++EE +A+E+ + S + V PV
Sbjct: 194 QCGVAGVMRQFILELLAQ-------SGYPVVEVDASLEELLQADEVFICNSLMPVWPVRA 246
Query: 281 WDEQV 285
E
Sbjct: 247 IGETS 251
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 58.6 bits (143), Expect = 1e-09
Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 47/208 (22%)
Query: 131 HQSTFYVIVIQDDSP----FVS--KGVKVITSSIPIKPPQF--------GTVKSV-NYLP 175
+ F VI SP F K V + S ++ G K NY
Sbjct: 154 EEYIFCVIA----SPVGAYFKGGVKPVSIWVSD------EYDRAAPGGTGAAKVGGNYAA 203
Query: 176 NVLSKMEAEETGAFAAIWLDGE--GFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAKR 233
++L++ EA+E G ++LD +I E MN F+TK+ + P IL G T
Sbjct: 204 SLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGSILPGITRDS 263
Query: 234 VLTLAKALVREGKLHGIKV--GNVTVEEGKKA------EEMILLGSGVLVRPV--VQW-- 281
+L LA+ L G+ V V+++E + E G+ ++ P+ +++
Sbjct: 264 LLQLAEDL-------GLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKYKD 316
Query: 282 DEQVIGNGKEGPIAQALLDLILEDMQSG 309
E VIG+G+ GP+ Q L D + +Q G
Sbjct: 317 KEFVIGDGEVGPVTQKLYDELT-GIQFG 343
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 40.7 bits (96), Expect = 5e-04
Identities = 67/281 (23%), Positives = 111/281 (39%), Gaps = 55/281 (19%)
Query: 46 DHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSAS 105
DH G VFD A +G +LD H R+ RSA ++ + + +
Sbjct: 27 DHAAWLGSTVFDGARAFEGVTPDLDLHCARVNRSAEALGLKPTVSAEEIEAL-------- 78
Query: 106 NCRKGSLR------------YWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKV 153
R+G R YW G F +ST + + +++ G +
Sbjct: 79 -AREGLKRFDPDTALYIRPMYWAEDG---FASGVAPDPESTRFALCLEEAPMPEPTGFSL 134
Query: 154 ITSSIPIKPPQFGT----VKSVNYLPNVLSKM--EAEETGAFAAIWLDGEGFIAEGPNMN 207
S P + P K+ PN ++ EA G A+ LD G +AE N
Sbjct: 135 TLS--PFRRPTLEMAPTDAKAGCLYPNN-ARALREARSRGFDNALVLDMLGNVAETATSN 191
Query: 208 VAFVTKERLLLMP----QFDKILSGCTAKRVLTLAKA---LVREGKLHGIKVGNVTVEEG 260
V F+ K+ ++ P F L+G T +RV+ L + V E L T E+
Sbjct: 192 V-FMVKDGVVFTPVPNGTF---LNGITRQRVIALLREDGVTVVETTL--------TYEDF 239
Query: 261 KKAEEMILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDL 301
+A+E+ G+ V PV ++D++ + + GP+ + +L
Sbjct: 240 LEADEVFSTGNYSKVVPVTRFDDRSL---QPGPVTRRAREL 277
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 38.2 bits (88), Expect = 0.004
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 162 PPQFGTVKSV-NYLPNVLSKMEAEETGAFAAIWLDG--EGFIAEGPNMNVAFVTKERLLL 218
P G VKS+ NY P + + A+ G ++LD + ++ E + NV FV K R +
Sbjct: 228 PGGAGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNV-FVVKGRTIS 286
Query: 219 MPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRP 277
P + IL G T K V+ +A + + + V V+E A+E+ G+ V+V P
Sbjct: 287 TPATNGTILEGITRKSVMEIA-----SDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAP 341
Query: 278 V---VQWDEQVIGNGKEGPIAQALLDLILEDMQSG 309
V +++V + + Q L +L +Q+G
Sbjct: 342 VGTITYQEKRVEYKTGDESVCQKLRS-VLVGIQTG 375
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 37.2 bits (86), Expect = 0.009
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
Query: 166 GTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNM------NVAFVTKERLLL 218
G VKS NY P V S +EA+ +G ++LD A G N+ N+ F+ K ++
Sbjct: 195 GGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDA----ATGKNIEELSACNI-FILKGNIVS 249
Query: 219 MPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRP 277
P IL G T K + LA+ + + ++ +V+V+E +AEE+ G+ V+V+
Sbjct: 250 TPPTSGTILPGVTRKSISELARDIGYQ-----VEERDVSVDELLEAEEVFCTGTAVVVKA 304
Query: 278 V--VQWDEQVIGNGKEGPIAQALLDLILEDMQSG 309
V V + ++ + L LIL ++Q G
Sbjct: 305 VETVTFHDKKVKYRTGEEALSTKLHLILTNIQMG 338
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 36.4 bits (84), Expect = 0.014
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 14/119 (11%)
Query: 166 GTVKSV-NYLPNVLSKMEAEETGAFAAIWLDG--EGFIAEGPNMNVAFVTKERLLLMPQF 222
G VK++ NY + ++ A+ G ++LD + ++ E + N+ F+ K+ ++ P
Sbjct: 246 GGVKTIGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNI-FIVKDNVISTPAI 304
Query: 223 D-KILSGCTAKRVLTLAKALVREGKLHGIKVG--NVTVEEGKKAEEMILLGSGVLVRPV 278
IL G T K ++ +A++ G +V NVTV+E +A+E+ G+ V+V PV
Sbjct: 305 KGTILPGITRKSIIDVARS-------QGFQVEERNVTVDELLEADEVFCTGTAVVVSPV 356
>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC)
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase activators and Myotubularins (PH-GRAM) domain.
The GRAMDC proteins are membrane proteins. Nothing is
known about its function. Members include: GRAMDC1A,
GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and
GRAMDC-like proteins. All of the members, except for
GRAMDC4 are included in this hierarchy. Each contains a
single PH-GRAM domain at their N-terminus. The GRAM
domain is found in glucosyltransferases, myotubularins
and other putative membrane-associated proteins. The
GRAM domain is part of a larger motif with a pleckstrin
homology (PH) domain fold.
Length = 111
Score = 28.6 bits (65), Expect = 1.4
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 20 QQFLAMYSSIFGGITTDPAAMVIPMDD 46
+ + YS+IFG T +VIP D
Sbjct: 34 ENHICFYSNIFGWETK----LVIPFKD 56
>gnl|CDD|236438 PRK09266, PRK09266, hypothetical protein; Provisional.
Length = 266
Score = 29.6 bits (67), Expect = 2.0
Identities = 43/190 (22%), Positives = 64/190 (33%), Gaps = 55/190 (28%)
Query: 52 GHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGS 111
+G F + + DG + LD HL R +R AS D +R
Sbjct: 24 NYGHFTSMQVRDGRVRGLDLHLQR-LRRASRELFGAALDDDRVR--------------AQ 68
Query: 112 LRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKG------VKVITSSIPIKPPQF 165
LR L+AG D + V V D F + V V TS P
Sbjct: 69 LRAALAAGPADASVR----------VTVFAPDFDFRNPLADVAPDVLVATSPPADGPAGP 118
Query: 166 GTVKSVNY---LPNVLSKMEAEETGAFAAIWL---------------DGEGFIAEGPNMN 207
++SV Y LP++ + G F + L D +G ++EG N
Sbjct: 119 LRLQSVPYERELPHI------KHVGTFGQLHLRRLAQRAGFDDALFVDPDGRVSEGATWN 172
Query: 208 VAFVTKERLL 217
+ F ++
Sbjct: 173 LGFWDGGAVV 182
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is
the most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 30.1 bits (67), Expect = 2.0
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Query: 125 LSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIKPPQFGTVKSVNYLPNVLSKMEAE 184
+SPV +TF++ D F S G+ S + P G S+ P + +
Sbjct: 217 ISPVLPGSNTFFITCSGDKPHFASGGILTPISPMKTPTPGTGYNYSLWLGPRPVPRFLGN 276
Query: 185 ETGAFAAIWLDGEGFIAEG 203
+ + +W G + +G
Sbjct: 277 SSKLY--LWYHYTGPVLDG 293
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 29.3 bits (65), Expect = 2.7
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 166 GTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGE--GFIAEGPNMNVAFVTKERLLLMPQF 222
G VK++ NY P + A+ G ++LD + I E N+ V ++
Sbjct: 228 GGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADTGKNIEEVSAANIFLVKGNIIVTPATS 287
Query: 223 DKILSGCTAKRVLTLAKALVREGKLHGIKVG--NVTVEEGKKAEEMILLGSGVLVRPV 278
IL G T K ++ +A L G KV V VEE K+AEE+ G+ V V
Sbjct: 288 GTILGGITRKSIIEIALDL-------GYKVEERRVPVEELKEAEEVFCTGTAAGVASV 338
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 28.9 bits (65), Expect = 3.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 15 NQKSKQQFLAMYSSIFGGITTDPA 38
N K Q AM +FGGIT PA
Sbjct: 65 NAAMKSQIDAMSHVMFGGITHPPA 88
>gnl|CDD|241362 cd13208, PH-GRAM_MTMR5_MTMR13, Myotubularian (MTM) related 5 and 13
proteins (MTMR5 and MTMR13) Pleckstrin
Homology-Glucosyltransferases, Rab-like GTPase
activators and Myotubularins (PH-GRAM) domain. MTMR5 is
a catalytically inactive phosphatase that plays a role
as an adapter for the phosphatase myotubularin to
regulate myotubularintracellular location. It lacks
several amino acids in the dsPTPase catalytic pocket
which renders it catalytically inactive as a
phosphatase. MTMR5 is the most well-studied inactive
member of this family and has been implicated in
cellular growth control and oncogenic transformation.
MTMR13 is a catalytically inactive phosphatase that
plays a role as an adapter for the phosphatase
myotubularin to regulate myotubularintracellular
location. It contains a Leu residue instead of a
conserved Cys residue in the dsPTPase catalytic loop
which renders it catalytically inactive as a
phosphatase. MTMR13 has high sequence similarity to
MTMR5 and has recently been shown to be a second gene
mutated in type 4B Charcot-Marie-Tooth syndrome. Both
MTMR5 and MTMR13 contain an N-terminal DENN domain, a
PH-GRAM domain, an inactive PTP domain, a SET
interaction domain, a coiled-coil domain, and a
C-terminal PH domain. Myotubularin-related proteins are
a subfamily of protein tyrosine phosphatases (PTPs) that
dephosphorylate D3-phosphorylated inositol lipids.
Mutations in this family cause the human neuromuscular
disorders myotubular myopathy and type 4B
Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs
5, 9-13) contain naturally occurring substitutions of
residues required for catalysis by PTP family enzymes.
Although these proteins are predicted to be
enzymatically inactive, they are thought to function as
antagonists of endogenous phosphatase activity or
interaction modules. Most MTMRs contain a N-terminal
PH-GRAM domain, a Rac-induced recruitment domain (RID)
domain, a PTP domain (which may be active or inactive),
a SET-interaction domain, and a C-terminal coiled-coil
region. In addition some members contain DENN domain
N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH
domains C-terminal to the coiled-coil region. The GRAM
domain, found in myotubularins, glucosyltransferases,
and other putative membrane-associated proteins, is part
of a larger motif with a pleckstrin homology (PH) domain
fold. The PH domain family possesses multiple functions
including the ability to bind phosphoinositides via its
beta1/beta2, beta3/beta4, and beta6/beta7 connecting
loops and to other proteins. However, no
phosphoinositide binding sites have been found for the
MTMRs to date. Although the majority of the sequences
are MTMR 5 and 13, this cd also contains MTM5 nematode
sequences.
Length = 146
Score = 26.8 bits (60), Expect = 8.4
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 22 FLAMYSSIFGGITTDPAAMVIPMDDHMVHRGHGVFDTAA------ICDGYLYELDQHLDR 75
FL Y IF G DP A + V R F A+ I YL L+Q L
Sbjct: 50 FLTNYRIIFKGTPCDPYAC-----EQTVVRS---FPIASLTKEKKITVQYLAHLEQKLQE 101
Query: 76 I--IRSASMAKIQLPFD 90
+RS + I++ FD
Sbjct: 102 GLQLRSCTFQLIKVAFD 118
>gnl|CDD|177773 PLN00178, PLN00178, sulfite reductase.
Length = 623
Score = 27.8 bits (62), Expect = 9.1
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 153 VITSSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFI-AEGPNMNVA 209
V+ + P + + L ++ + A ++GA+ IW+DGE + AE P + A
Sbjct: 184 VLAPAAPFARKDYLFAQE---LAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKA 238
>gnl|CDD|237402 PRK13504, PRK13504, sulfite reductase subunit beta; Provisional.
Length = 569
Score = 27.8 bits (63), Expect = 9.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 185 ETGAFAAIWLDGE 197
T A+A IWLDGE
Sbjct: 179 RTRAYAEIWLDGE 191
>gnl|CDD|184240 PRK13683, PRK13683, hypothetical protein; Provisional.
Length = 87
Score = 26.1 bits (58), Expect = 9.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 290 KEGPIAQALLDLILEDMQSGPPTV 313
KE A+AL I + M+SG P +
Sbjct: 20 KEAEDAEALYQQIRQAMRSGNPRL 43
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.398
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,410,213
Number of extensions: 1605598
Number of successful extensions: 1392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1340
Number of HSP's successfully gapped: 41
Length of query: 319
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 222
Effective length of database: 6,635,264
Effective search space: 1473028608
Effective search space used: 1473028608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)