RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020956
(319 letters)
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 174 bits (444), Expect = 4e-53
Identities = 57/271 (21%), Positives = 102/271 (37%), Gaps = 22/271 (8%)
Query: 41 VIPMDDHMVHRGH---GVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRI 97
+D R G+F+T + H +R+ SA I
Sbjct: 16 SFGID----DRIFLGEGLFETIRVNSSKPSFAYMHWERLGNSARQLGIPFEISFDDWFEH 71
Query: 98 LIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSS 157
LIQ + N G ++ LS G L+ G I + V++I+ +
Sbjct: 72 LIQKIQKDNLYHGGIKAILSGGPASRGLAERGQVSQL---IFQTFNYSIQKHPVRLISIN 128
Query: 158 -IPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERL 216
+ K +KSVNYL ++++ +A GA A++ + E + E N+ + L
Sbjct: 129 WLRDKANPLYQLKSVNYLEAIIAQRQAIAVGADDALFFNTENHVTETTCANLFLIENNIL 188
Query: 217 LLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVL 274
D IL G T R+++ + + V ++T + + A+ + L S
Sbjct: 189 YTPRVEDGILPGITRARLISHCQQH-------KMSVQEISLTKKRIEDADAVFLTNSLQG 241
Query: 275 VRPVVQWDEQVIGNGKEGPIAQALLDLILED 305
+R V+ D + PI L+ L+ +D
Sbjct: 242 IRRVLSLDNIIFEVN--HPIIDKLIFLLNQD 270
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 171 bits (437), Expect = 4e-52
Identities = 52/266 (19%), Positives = 101/266 (37%), Gaps = 16/266 (6%)
Query: 41 VIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQ 100
+ + D G G F TA + DG + L H+ R+ + I F L + +
Sbjct: 11 SLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQRLQDACQRLMISCDF-WPQLEQEMKT 69
Query: 101 TVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQ---DDSPFVSKGVKVITSS 157
A+ + G L+ +S G G S + +T + V ++G+ + S
Sbjct: 70 L--AAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSP 127
Query: 158 IP-IKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERL 216
+ + P +K +N L VL + E+T A A+ LD EG++ E N+ + +
Sbjct: 128 VRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLDSEGWVTECCAANLFWRKGNVV 187
Query: 217 LLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVL 274
++G + + L ++ ++EE +A+EM++ + +
Sbjct: 188 YTPRLDQAGVNGIMRQFCIRLLAQS-------SYQLVEVQASLEESLQADEMVICNALMP 240
Query: 275 VRPVVQWDEQVIGNGKEGPIAQALLD 300
V PV + + L +
Sbjct: 241 VMPVCACGDVSFSSATLYEYLAPLCE 266
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 168 bits (427), Expect = 3e-50
Identities = 57/318 (17%), Positives = 111/318 (34%), Gaps = 35/318 (11%)
Query: 10 KSTQANQKSKQQFLAMYSSIFGGIT--TDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLY 67
+ + KS + + +GG +P ++ DD + RG G+F+T I DG+
Sbjct: 2 MALEPQIKSAPTPVILIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIRDGHAC 61
Query: 68 ELDQHLDRIIRSASMAKIQLPFD---RKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQ 124
+ +H +R SA++ + P K+ + + S N + S + LS G
Sbjct: 62 NVRRHGERFKASAALLGLPEPILEDWEKATQMGIESWYSHPNAGEASCTWTLSRGRSSTG 121
Query: 125 LSPVGCHQSTFYVIVIQDDSPFVS------------------KGVKVITSSIPIKPPQFG 166
L+ + + VS K + S + P +
Sbjct: 122 LASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPGIGKATRGELSKVERTPAPWL 181
Query: 167 T--VKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDK 224
T K++ Y N+ + A+ G I+ D + EG V +++
Sbjct: 182 TVGAKTLAYAANMAALRYAKSNGFDDVIFTD-GDRVLEGATSTVVSFKGDKIRTPSPGGD 240
Query: 225 ILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLVRPVVQWD 282
IL G T + A G + ++++++ A+ + L+ S V + D
Sbjct: 241 ILPGTTQAALFAHATEK-------GWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRLD 293
Query: 283 EQVIGNGKEGPIAQALLD 300
+ +AL+
Sbjct: 294 GHKLRKPDNEKEIKALIT 311
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 166 bits (424), Expect = 4e-50
Identities = 60/266 (22%), Positives = 110/266 (41%), Gaps = 17/266 (6%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
I +D G GV++ + +G ++ +++H+DR+ SA +I +P+ + ++L +
Sbjct: 17 IDKEDRGYQFGDGVYEVVKVYNGEMFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQD---DSPFVSKGVKVITSS- 157
V + G + + ++ G + ++ + KGVK
Sbjct: 77 VEKNELNTGHIYFQVTRGTSPRAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVED 136
Query: 158 IPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLL 217
I +KS+N L VL+K EA E G + A L + EG + NV + L
Sbjct: 137 IRWLRCD---IKSLNLLGAVLAKQEAHEKGCYEA-ILHRNNTVTEGSSSNVFGIKDGILY 192
Query: 218 LMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLV 275
P + IL G T V+ A + + V T E K +E+ + + +
Sbjct: 193 THPANNMILKGITRDVVIACANEI-------NMPVKEIPFTTHEALKMDELFVTSTTSEI 245
Query: 276 RPVVQWDEQVIGNGKEGPIAQALLDL 301
PV++ D ++I +GK G + L
Sbjct: 246 TPVIEIDGKLIRDGKVGEWTRKLQKQ 271
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 165 bits (420), Expect = 2e-49
Identities = 59/276 (21%), Positives = 115/276 (41%), Gaps = 26/276 (9%)
Query: 41 VIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQ 100
+ + D + G G+F+T A+ G L++HL R+ ++ +P D +LR+ L+
Sbjct: 33 ELSVRDRGLAYGDGLFETLAVRAGTPRLLERHLARLEEGC--RRLAIPLDTAALRQELLA 90
Query: 101 TVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVS-----KGVKVIT 155
+A G + ++ G G +P I+ P +GV++
Sbjct: 91 FCAA--LGDGVAKLIVTRGEGLRGYAPPAEASPR--RILSGSPRPAYPERHWQQGVRLFA 146
Query: 156 SSIPI-KPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKE 214
+ + P +K +N L VL++ E + G + LD + EG N+ + +
Sbjct: 147 CRTRLAEQPLLAGLKHLNRLEQVLARAEWSDAGHAEGLMLDVHERVVEGVFSNL-LLVLD 205
Query: 215 RLLLMPQFDK-ILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGS 271
L+ P + ++G +L A+ + G+ + +V++ E A+E+ L S
Sbjct: 206 GTLVAPDLRRCGVAGVMRAELLERAEGI-------GVPLAIRDVSMAELATADEVFLCNS 258
Query: 272 GVLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQ 307
+ PV DE V G + + L D + +D+
Sbjct: 259 QFGIWPVRALDEHVWP---VGELTRKLQDQLRDDLD 291
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 149 bits (378), Expect = 5e-43
Identities = 73/274 (26%), Positives = 124/274 (45%), Gaps = 31/274 (11%)
Query: 46 DHMVHRGHGVF------DTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILI 99
H +H G VF +TA ++ L +H+ R SA + ++++PF + L +
Sbjct: 26 SHALHYGTSVFEGIRAYETAK--GPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIK 83
Query: 100 QTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQ----DDSPFVSKGVKVIT 155
+ V + R +R G ++P+ + + V + V KG ++IT
Sbjct: 84 EVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLIT 143
Query: 156 SSIP-----IKPPQFGTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVA 209
SS + P + K NY+ + L+KMEA GA A+ LD EG++AEG N+
Sbjct: 144 SSWARFPANVMPGK---AKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENL- 199
Query: 210 FVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMI 267
F ++ ++ + L G T V+ +AK L G +V T ++ A+E+
Sbjct: 200 FFVRDGVIYALEHSVNLEGITRDSVIRIAKDL-------GYEVQVVRATRDQLYMADEVF 252
Query: 268 LLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDL 301
+ G+ V PV D + IG G GP+A L ++
Sbjct: 253 MTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREV 286
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 145 bits (369), Expect = 1e-41
Identities = 59/274 (21%), Positives = 104/274 (37%), Gaps = 30/274 (10%)
Query: 46 DHMVHRGHGVF------DTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILI 99
H +H G VF D+ ++ +H+ R+ SA + + + L
Sbjct: 27 SHALHYGTSVFEGIRCYDSHK--GPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACR 84
Query: 100 QTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPF----VSKGVKVIT 155
+ +N +R + G ++P + + + + + +G+ +
Sbjct: 85 DVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMV 144
Query: 156 SSIP-----IKPPQFGTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVA 209
SS P K+ NYL ++L EA G I LD G+I+EG N+
Sbjct: 145 SSWNRAAPNTIPTA---AKAGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLF 201
Query: 210 FVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMI 267
V L P L G T ++ LAK L GI+V ++ E A+E+
Sbjct: 202 EVKDGVLFTPPFTSSALPGITRDAIIKLAKEL-------GIEVREQVLSRESLYLADEVF 254
Query: 268 LLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDL 301
+ G+ + PV D +G G+ GP+ + +
Sbjct: 255 MSGTAAEITPVRSVDGIQVGEGRCGPVTKRIQQA 288
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 146 bits (370), Expect = 1e-41
Identities = 72/275 (26%), Positives = 115/275 (41%), Gaps = 33/275 (12%)
Query: 46 DHMVHRGHGVF------DTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILI 99
H +H G GVF TA ++ L +H R++ SA + ++ +PFD+++L
Sbjct: 49 THTLHYGMGVFEGVRAYKTADG-GTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQR 107
Query: 100 QTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQD-----DSPFVSKGVKVI 154
V + LR + G +S G I ++KG++V
Sbjct: 108 DVVRENKLESCYLRPIIWIGSEKLGVSAKGNTIHVA--IAAWPWGAYLGEEGLAKGIRVK 165
Query: 155 TSSIP-----IKPPQFGTVKSV-NYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNV 208
TSS + + K+ Y+ ++L+ EA G A+ LD +G+++EG N
Sbjct: 166 TSSFTRHHVNVSMVR---AKASGWYVNSILANQEATADGYDEALLLDVDGYVSEGSGENF 222
Query: 209 AFVTKERLLLMPQFDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEM 266
F+ L P L G T V+TLAK GI+V +T +E A+E
Sbjct: 223 -FLVNRGKLYTPDLASCLDGITRDTVITLAKEA-------GIEVIEKRITRDEVYTADEA 274
Query: 267 ILLGSGVLVRPVVQWDEQVIGNGKEGPIAQALLDL 301
G+ V P+ + D + IG G GPI + L
Sbjct: 275 FFTGTAAEVTPIRELDNRTIGGGARGPITEKLQSA 309
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 142 bits (360), Expect = 1e-40
Identities = 61/268 (22%), Positives = 101/268 (37%), Gaps = 34/268 (12%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
+ V++T + +H R+ RSA + L ++L
Sbjct: 29 LDFSLFEKSLQGAVYETLRTYSRAPFAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAG 88
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSI--- 158
++ ++ +L G+ V + + P + GV+V S++
Sbjct: 89 ADE-FKQEVRIKVYLFPDSGE-----VL-------FVFSPLNIPDLETGVEVKISNVRRI 135
Query: 159 --PIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERL 216
PP +K VL++ E + I L G + EG NV F+ KE
Sbjct: 136 PDLSTPPA---LKITGRTDIVLARREI--VDCYDVILLGLNGQVCEGSFSNV-FLVKEGK 189
Query: 217 LLMPQFD-KILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGV 273
L+ P D IL G T + V+ LAK+L I V V V E +A+EM L +
Sbjct: 190 LITPSLDSGILDGITRENVIKLAKSL-------EIPVEERVVWVWELFEADEMFLTHTSA 242
Query: 274 LVRPVVQWDEQVIGNGKEGPIAQALLDL 301
V PV + +E + GP+ L++
Sbjct: 243 GVVPVRRLNEHSFFEEEPGPVTATLMEN 270
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 138 bits (349), Expect = 2e-39
Identities = 58/252 (23%), Positives = 106/252 (42%), Gaps = 26/252 (10%)
Query: 42 IPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQT 101
+ + + ++ G VF T G L++HL R+ R A + P D L + +
Sbjct: 11 LALPEAFLYHGASVFTTLRAEGGRPLWLEEHLARLRRHALALGLSYPGDEAFLEDL--EA 68
Query: 102 VSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIK 161
+ + + LR + G G +LS + + + + + +GV+V + +
Sbjct: 69 LLRAFPKAPCLRLRFTVGEGV-RLSEARPY-APLPLSLYR-------EGVRVRLTGYRVH 119
Query: 162 PPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQ 221
P K+ NYLP L+ EA + GAF + LD G + +G + + +E L +
Sbjct: 120 PDLAR-YKTGNYLPYRLALEEARKEGAFEGLLLDAFGHVVDGSRTSP-LLFREGTLYLL- 176
Query: 222 FDKILSGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKAEEMILLGSGVLVRPVV 279
+ L G T ++V A+ L G++V G E ++L GSGV + PV
Sbjct: 177 -EGGLEGITREKVAEAARGL-------GLRVERGLFRPEG--LRGHLLLAGSGVGLLPVR 226
Query: 280 QWDEQVIGNGKE 291
+++ +
Sbjct: 227 PPPPELLPLIER 238
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 113 bits (286), Expect = 2e-30
Identities = 39/241 (16%), Positives = 73/241 (30%), Gaps = 37/241 (15%)
Query: 46 DHMVHRGHGVFDTAAICDG-YLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSA 104
+ +T G D+HL R+ SA A++ D + + +L +
Sbjct: 9 RDGDTADFELIETMRWQPGTSFLRFDRHLARLYGSA--AELGFACDPQRIAEVLSDALDG 66
Query: 105 SNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFV----SKGVKVITSSIPI 160
+ R L+ GD S P+ K + + +
Sbjct: 67 AR-TAMRTRLALARN-GDATASA----------------QPYEPLAADKVWILRLARTRL 108
Query: 161 -KPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLM 219
K+ ++ E T A + + G I EG NV + +L
Sbjct: 109 DSQNTLLRHKTSRRQLYTHARSEYLVTQADEVLLANERGEICEGTITNVFADFGDGVLAT 168
Query: 220 PQFDK-ILSGCTAKRVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSGVLVRPV 278
P+ D +L G +L + E + ++ K A+ + + S + P
Sbjct: 169 PRLDCGLLPGVLRAELLDEGR--AEEAIY--------SYDDLKSAKALFVGNSLRGLIPA 218
Query: 279 V 279
Sbjct: 219 K 219
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 75.1 bits (185), Expect = 3e-16
Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 35/220 (15%)
Query: 54 GVFDTAAICDGYLYELDQHLDRIIRSASMAKIQLPFDRKSLRRILIQTVSASNCRKGSLR 113
+F+T I G + H R +S ++ L +I+ + + R+G +R
Sbjct: 6 PLFETILIEQGQAKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHTALFTHREGLIR 65
Query: 114 YWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSIPIK-PPQFGTVKSVN 172
+ D+ L P+ KV + P+ ++K +
Sbjct: 66 CRIDYNHHDYVLQC----------------FPYQ---QKVYRTFKPVFCDHIDYSLKFSD 106
Query: 173 YLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFDKILSGCTAK 232
+L+ + ++ I + +G + + N+ F + + P +L G
Sbjct: 107 R--TLLNNLLKQK-EECDEIMIIRQGKVTDCSIGNLIFR-QNNQWITPD-KPLLEGTQRA 161
Query: 233 RVLTLAKALVREGKLHGIKVGNVTVEEGKKAEEMILLGSG 272
++L K I + E+ + EE+ L+ +
Sbjct: 162 KLLEQKK----------IIAREIFFEDLAQYEEIRLINAM 191
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 66.9 bits (164), Expect = 1e-12
Identities = 75/335 (22%), Positives = 123/335 (36%), Gaps = 92/335 (27%)
Query: 30 FGGITTDPAAMVIPMDDHMVHRGHGVFD------TAAICDG--YLYELDQHLDRIIRSAS 81
+G I DP+A+V+ H G +F+ A DG + + + R+ SA
Sbjct: 62 YGPIQLDPSAIVL-------HYGQEIFEGLKAYRWA---DGSIVSFRPEANAARLQSSA- 110
Query: 82 MAKIQLP-FDRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQL----------SPVGC 130
++ +P + L Q ++ W+ G+ L +G
Sbjct: 111 -RRLAIPELPEEVFIESLRQLIAVD-------EKWVPPAGGEESLYLRPFVIATEPGLGV 162
Query: 131 HQS---TFYVIVIQDDSP----FVS--KGVKVITSSIPIKPPQF--------GTVK-SVN 172
S + +I SP F K V V S ++ G K N
Sbjct: 163 RPSNEYRYLLIA----SPAGAYFKGGIKPVSVWLS------HEYVRASPGGTGAAKFGGN 212
Query: 173 YLPNVLSKMEAEETGAFAAIWLDG--EGFIAEGPNMNVAFVTKERL---LLMPQFD-KIL 226
Y ++L++ +A E G +WLD ++ E MN+ FV L+ P+ +L
Sbjct: 213 YAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLL 272
Query: 227 SGCTAKRVLTLAKALVREGKLHGIKV--GNVTVEEGKKA------EEMILLGSGVLVRPV 278
G T +L LA G V + V+E +K E+ G+ ++ PV
Sbjct: 273 PGITRDSLLQLATDA-------GFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPV 325
Query: 279 --VQWDEQ--VIGNGKEGPIAQALLDLILEDMQSG 309
V+ + I +G+ G I AL D L +Q G
Sbjct: 326 SHVKHHDGEFTIADGQPGEITMALRDT-LTGIQRG 359
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 63.4 bits (155), Expect = 2e-11
Identities = 65/332 (19%), Positives = 119/332 (35%), Gaps = 84/332 (25%)
Query: 30 FGGITTDPAAMVIPMDDHMVHRGHGVFD------TAAICDG--YLYELDQHLDRIIRSAS 81
F +T PA+ + H +F+ D L+ ++DR++RSA
Sbjct: 56 FQNLTLHPASSSL-------HYSLQLFEGMKAFKGK---DQQVRLFRPWLNMDRMLRSA- 104
Query: 82 MAKIQLP-FDRKSLRRILIQTVSASNCRKGSLRYWLSAGVG------------DFQLSPV 128
++ LP FD+ L + + + + W+ G + L
Sbjct: 105 -MRLCLPSFDKLELLECIRRLIEVD-------KDWVPDAAGTSLYVRPVLIGNEPSLGVS 156
Query: 129 GCHQSTFYVIVIQDDSP----F---VSKGVKVITSSIPIK--PPQFGTVKSV-NYLPNVL 178
++ +VI+ P F V ++ I+ G K NY P VL
Sbjct: 157 QPRRALLFVIL----CPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVL 212
Query: 179 SKMEAEETGAFAAIWLDG-EGFIAEGPNMNVAFVTK----ERLLLMPQFD-KILSGCTAK 232
+ EA + G +WL G + + E MN+ L+ P + IL G +
Sbjct: 213 VQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQ 272
Query: 233 RVLTLAKAL----VREGKLHGIKVGNVTVEEGKKA------EEMILLGSGVLVRPV--VQ 280
+L +A+ V E +T+++ +A E+ G+ V PV +
Sbjct: 273 SLLDMAQTWGEFRVVERT--------ITMKQLLRALEEGRVREVFGSGTACQVCPVHRIL 324
Query: 281 WDEQ--VIGNGKEGP-IAQALLDLILEDMQSG 309
+ ++ I + GP + L+++Q G
Sbjct: 325 YKDRNLHIPTMENGPELILRFQK-ELKEIQYG 355
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 62.3 bits (152), Expect = 4e-11
Identities = 68/332 (20%), Positives = 118/332 (35%), Gaps = 84/332 (25%)
Query: 30 FGGITTDPAAMVIPMDDHMVHRGHGVFD------TAAICDG--YLYELDQHLDRIIRSAS 81
++ P + + H +F+ D L++ + ++DR+ RSA
Sbjct: 76 LQNLSLHPGSSAL-------HYAVELFEGLKAFRGV---DNKIRLFQPNLNMDRMYRSA- 124
Query: 82 MAKIQLP-FDRKSLRRILIQTVSASNCRKGSLRYWLSAGVG------------DFQLSPV 128
+ LP FD++ L + Q V + W+ + L
Sbjct: 125 -VRATLPVFDKEELLECIQQLVKLD-------QEWVPYSTSASLYIRPTFIGTEPSLGVK 176
Query: 129 GCHQSTFYVIVIQDDSPF-------VSKGVKVITSSIPIK--PPQFGTVKSV-NYLPNVL 178
++ +V++ SP V + + ++ G K NY ++
Sbjct: 177 KPTKALLFVLL----SPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLF 232
Query: 179 SKMEAEETGAFAAIWLDGE-GFIAEGPNMNVAFV----TKERLLLMPQFD-KILSGCTAK 232
++ EA + G +WL GE I E MN+ E L P D IL G T +
Sbjct: 233 AQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRR 292
Query: 233 RVLTLAKAL----VREGKLHGIKVGNVTVEEGKKA------EEMILLGSGVLVRPV--VQ 280
+L LA V E +T+++ A EM G+ +V PV +
Sbjct: 293 CILDLAHQWGEFKVSERY--------LTMDDLTTALEGNRVREMFGSGTACVVCPVSDIL 344
Query: 281 WDEQ--VIGNGKEGP-IAQALLDLILEDMQSG 309
+ + I + GP +A +L L D+Q G
Sbjct: 345 YKGETIHIPTMENGPKLASRILS-KLTDIQYG 375
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.021
Identities = 68/388 (17%), Positives = 118/388 (30%), Gaps = 148/388 (38%)
Query: 3 VKAIERIKS-TQANQKSKQQFLAMYSS---------------IFGGITTDPAAMVIPMDD 46
VK E IK+ A +K+ F +S IFGG
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-------------- 162
Query: 47 HMVHRGHGVFDTAAICDGYLYELDQHL--------DRIIRSASMAKIQLPFDRKSLRRIL 98
+G+ D Y EL + L +I+ ++ +L ++
Sbjct: 163 ----QGNT--------DDYFEEL-RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 99 IQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITSSI 158
Q ++ + WL + +P D ++ SI
Sbjct: 210 TQGLN--------ILEWLE----NPSNTP---------------DKDYLL--------SI 234
Query: 159 PIKPPQFGTVKSVNYL--PNVLSKMEAEETGAFAAIWLDGEG-----FIAEGPNMNVAFV 211
PI P G ++ +Y+ +L E +G IAE + +F
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE-SFF 293
Query: 212 TKERLLLMPQFDKIL--SGCTAKR---VLTLAKALVREGKLHGIK-------VGNVTVEE 259
R + +L G +L +++ + + + N+T E+
Sbjct: 294 VSVRKAI-----TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 260 GKKAEEMILLGSGVLVRPVVQWDEQV-IG--NGKE-----GPIAQAL--LDLILEDM--- 306
++ + + L P +QV I NG + GP Q+L L+L L
Sbjct: 349 ---VQDYVNKTNSHL--PA---GKQVEISLVNGAKNLVVSGP-PQSLYGLNLTLRKAKAP 399
Query: 307 ----QSGPP--------TVR---VAVPY 319
QS P + R VA P+
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPF 427
Score = 31.6 bits (71), Expect = 0.47
Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 56/184 (30%)
Query: 27 SSIFGG------IT--TDPAAMVIPMDDHMVHRGHGVFDTAAICDGYLYELDQHLDRIIR 78
S F T T PA ++ + G+ A G H
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-------H------ 1762
Query: 79 S-------ASMAKIQLPFD------RKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQL 125
S AS+A + + + R + +Q + G Y + A + ++
Sbjct: 1763 SLGEYAALASLADV-MSIESLVEVVFY--RGMTMQVAVPRD-ELGRSNYGMIA-INPGRV 1817
Query: 126 SPVGCHQSTFYVI--VIQDDSPFV------SKGVKVITSSIPIKPPQFGTVKSVNYLPNV 177
+ ++ YV+ V + V + + + + G +++++ + NV
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA---------GDLRALDTVTNV 1868
Query: 178 LSKM 181
L+ +
Sbjct: 1869 LNFI 1872
Score = 28.5 bits (63), Expect = 3.8
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 37/108 (34%)
Query: 66 LYELDQHLDRIIRSASMAKIQLPF-DRKSLRRILIQTVSASNCRKGSLRYWLSAGVGDFQ 124
LY L+ L + + + + ++PF +RK K S R+ L
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKL---------------KFSNRF-L-------- 421
Query: 125 LSPVGC--HQSTFY---VIVIQDDSPFVSKGVKVITSSIPIKPPQFGT 167
PV H S +I D V V I I P + T
Sbjct: 422 --PVASPFH-SHLLVPASDLINKD--LVKNNVSFNAKDIQI--PVYDT 462
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.058
Identities = 40/218 (18%), Positives = 67/218 (30%), Gaps = 70/218 (32%)
Query: 10 KSTQANQ--KSKQQFLAMYSSIF---GGITTDPAAMVIPMDDHMVHRGHGVFDTAAICDG 64
K+ A S + M IF P ++ + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK--------------LL-- 206
Query: 65 YLYELDQHLDRIIRSASMAKIQLPFD--RKSLRRI----------LI-------QTVSAS 105
Y++D + RS + I+L + LRR+ L+ + +A
Sbjct: 207 --YQIDPNWT--SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 106 N--CRKGSL---RYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFV---SKGV--KVIT 155
N C+ L R+ V DF LS +T ++ + K + K +
Sbjct: 263 NLSCK--ILLTTRF---KQVTDF-LSA----ATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 156 SSIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIW 193
P + V + N P LS + AE A W
Sbjct: 313 CRPQDLPRE---VLTTN--PRRLS-IIAESIRDGLATW 344
Score = 33.7 bits (76), Expect = 0.10
Identities = 37/281 (13%), Positives = 64/281 (22%), Gaps = 118/281 (41%)
Query: 44 MDDHMVHRGHG------VFDTAAICDGYLYELDQHLDRIIRSASMAKI-QLPFDRKSLRR 96
MD + VF+ A + + ++ I+ + I D S
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTL 65
Query: 97 ILIQTVSASNCRKGSLRYWLSAGVGDFQLSPVGCHQSTFYVIVIQDDSPFVSKGVKVITS 156
L T+ K F V++ + F+ +K
Sbjct: 66 RLFWTL----LSKQEEMV------------------QKFVEEVLRINYKFLMSPIKTEQ- 102
Query: 157 SIPIKPPQFGTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERL 216
+ P T + + L + D + F NV RL
Sbjct: 103 ----RQPSMMTRMYIEQR-DRL--------------YNDNQVF----AKYNV-----SRL 134
Query: 217 LLMPQFDKILSGCTAKRVLTLAKAL--VREGK---LHGIKVGNVTVEEGKKAEEMILLGS 271
+ L L +AL +R K + G + LGS
Sbjct: 135 ---------------QPYLKLRQALLELRPAKNVLIDG----------------V--LGS 161
Query: 272 G--VLVRPVVQWDEQVIGNGKEGPIAQALLDLILEDMQSGP 310
G + L ++
Sbjct: 162 GKTWVA-------------------LDVCLSYKVQCKMDFK 183
>1s05_A Cytochrome C-556, C556; THis is A model obtained by -restrained
modeling and minimization., electron transport; HET:
HEM; NMR {Rhodopseudomonas palustris} SCOP: a.24.3.2
Length = 129
Score = 29.7 bits (66), Expect = 0.57
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 5/58 (8%)
Query: 179 SKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF-----VTKERLLLMPQFDKILSGCTA 231
K + + IW + F E + A K+ L I C
Sbjct: 62 LKPFDSKYSSSPKIWAERAKFDTEIADFAKAVDGAKGKIKDVDTLKAAMQPIGKACGN 119
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; 2.99A {Methanosarcina mazei}
Length = 290
Score = 28.9 bits (64), Expect = 2.2
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 114 YWLSAGVGDFQLSPVGCHQSTFYVIVIQDDS-----PFVSKGVKVITSSIPIKPP-QF-- 165
YW + S +Y + + P+ +GV +++ PI +F
Sbjct: 105 YWNKMNGTASVAPLLHYDSSDYYQLPKATEKDVLTEPYFYEGVFMVSYVSPIMKEGEFAG 164
Query: 166 --GTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFI 200
G S+ Y+ V+SK+ +TG +A + + G I
Sbjct: 165 IGGVDVSLEYVDEVVSKVRTFDTG-YAFM-VSNSGVI 199
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A
{Rhodobacter sphaeroides} SCOP: a.24.3.2
Length = 130
Score = 27.8 bits (61), Expect = 2.7
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 175 PNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAF------VTKERLLLMPQFDKILSG 228
S + + T A AAIW D +GF A+G A + L K+
Sbjct: 59 APGTSADDVKGTAAKAAIWQDADGFQAKGMAFFEAVAALEPAAGAGQKELAAAVGKVGGT 118
Query: 229 CTA 231
C +
Sbjct: 119 CKS 121
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle;
HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB:
3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A*
2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A*
2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Length = 127
Score = 27.7 bits (61), Expect = 2.8
Identities = 11/55 (20%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 184 EETGAFAAIWLDGEGFIAEGPNMNVAFV-------TKERLLLMPQFDKILSGCTA 231
E A IW D F + V + L F + + C A
Sbjct: 64 EGGDARPEIWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGASCKA 118
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; HET: BTB; 1.70A {Methanosarcina
mazei} PDB: 3li8_A* 3lia_A*
Length = 291
Score = 28.1 bits (62), Expect = 3.8
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 114 YWLSAGVGDFQLSPVGCHQSTFYVIVIQDDS-----PFVSKGVKVITSSIPIKPP-QF-- 165
Y V S +Y + P+ +G+ +++ PI +F
Sbjct: 106 YCNKINGPVIIEPLVHYDSSDYYQLPKTTGKDTLTEPYFYEGIFMVSYDSPIFKNGEFAG 165
Query: 166 --GTVKSVNYLPNVLSKMEAEETGAFAAIWLDGEGFIAEGPN 205
G + Y+ +V S + +TG +A + + G P
Sbjct: 166 IAGVDVPLEYVDDVASSIRTFDTG-YAFM-VSNTGIFLSHPT 205
>3d4e_A Putative beta-lactamase inhibitor protein; NP_721579.1, STRU
genomics, joint center for structural genomics, JCSG;
1.40A {Streptococcus mutans}
Length = 179
Score = 27.2 bits (59), Expect = 6.4
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 175 PNVLSKMEAEETGAFAAIWLDGEGFIAEGPNMNVAFVTKERLLLMPQFD 223
P+VLS+ + + +W G + + + F L Q D
Sbjct: 130 PDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIELYF-ENGLLKNKTQKD 177
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM;
1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB:
1a7v_A*
Length = 125
Score = 26.6 bits (58), Expect = 6.6
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 5/55 (9%)
Query: 182 EAEETGAFAAIWLDGEGFIAEGPNM-----NVAFVTKERLLLMPQFDKILSGCTA 231
+T A I+ D F + K+ L +L C +
Sbjct: 61 TGGDTAALPKIFEDKAKFDDLFAKLAAAATAAQGTIKDEASLKANIGGVLGNCKS 115
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 27.1 bits (61), Expect = 8.9
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 246 KLHGIKV----GN-VTVEEGKKAEEMI--LLGSGVLVRPVVQW 281
+ +K+ GN V ++ G +A + L +G + R
Sbjct: 294 RFEKVKLYPANGNFVLIDLGIEAGTIFSYLEKNGYITRSGAAL 336
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.398
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,979,229
Number of extensions: 312367
Number of successful extensions: 733
Number of sequences better than 10.0: 1
Number of HSP's gapped: 687
Number of HSP's successfully gapped: 31
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)