Query 020958
Match_columns 319
No_of_seqs 236 out of 1249
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:40:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 3.7E-23 1.3E-27 155.6 6.9 60 50-109 2-62 (63)
2 1gcc_A Ethylene responsive ele 95.8 0.00078 2.7E-08 50.1 -1.4 23 2-24 38-60 (63)
3 1u3e_M HNH homing endonuclease 92.6 0.0073 2.5E-07 52.1 -3.0 58 30-91 89-146 (174)
4 3igm_B PF14_0633 protein; AP2 88.5 0.56 1.9E-05 36.3 4.5 28 46-75 3-31 (77)
5 1z1b_A Integrase; protein-DNA 84.0 1.4 4.9E-05 39.6 5.7 42 52-97 14-55 (356)
6 3jtz_A Integrase; four strande 51.6 26 0.00088 26.9 5.3 43 55-97 29-75 (88)
7 1b69_A Protein (integrase); in 41.7 31 0.0011 26.0 4.1 30 46-76 7-36 (69)
8 3ju0_A Phage integrase; four s 33.3 64 0.0022 25.7 5.1 43 55-97 29-75 (108)
9 1x60_A Sporulation-specific N- 29.5 40 0.0014 24.3 3.1 23 73-95 46-68 (79)
10 1uta_A FTSN, MSGA, cell divisi 28.9 51 0.0017 24.1 3.6 24 72-95 45-68 (81)
11 3lto_A Mevalonate diphosphate 28.4 14 0.00047 35.0 0.4 18 3-20 4-22 (323)
12 2ftc_I Mitochondrial ribosomal 27.8 80 0.0027 25.7 4.9 36 62-99 80-115 (118)
13 2bn8_A CEDA, cell division act 24.6 43 0.0015 25.8 2.4 40 47-89 36-75 (87)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.88 E-value=3.7e-23 Score=155.58 Aligned_cols=60 Identities=68% Similarity=1.204 Sum_probs=57.0
Q ss_pred ccceEEECCCCceEEEEecCC-CCeEEeecCcccHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 020958 50 QYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDE 109 (319)
Q Consensus 50 ~YRGVr~r~~GKW~A~I~~~~-~gK~i~LGtF~T~EEAArAYD~Aa~~l~G~~A~~NFp~~ 109 (319)
+||||+++++|||+|+|++|. +|+++|||+|+|+||||+|||.++++++|..+++|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 699999889999999999886 489999999999999999999999999999999999986
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=95.85 E-value=0.00078 Score=50.08 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=21.9
Q ss_pred cccccccccceeecccccccccc
Q 020958 2 KFASLYDLVVLLVYEITFFFLFS 24 (319)
Q Consensus 2 ~AA~AYD~Aalk~~g~~~~~N~~ 24 (319)
|||+|||.|+++++|..+.+||+
T Consensus 38 eAA~AyD~Aa~~~~G~~a~~NFp 60 (63)
T 1gcc_A 38 DAALAYDRAAFRMRGSRALLNFP 60 (63)
T ss_dssp HHHHHHHHHHHHHHSSCCCCSSC
T ss_pred HHHHHHHHHHHHhcCcccccCCC
Confidence 79999999999999999999995
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=92.58 E-value=0.0073 Score=52.09 Aligned_cols=58 Identities=5% Similarity=-0.047 Sum_probs=38.0
Q ss_pred chhhhhHHHhhhhhccCCCCccceEEECCCCceEEEEecCCCCeEEeecCcccHHHHHHHHH
Q 020958 30 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYD 91 (319)
Q Consensus 30 s~~~~~~~~~~~~~~r~~~S~YRGVr~r~~GKW~A~I~~~~~gK~i~LGtF~T~EEAArAYD 91 (319)
.-.+...+.+++.....+ +.++||.....++|.+.|. .+ +.++||.|.|.+|||++|.
T Consensus 89 ~~~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~--~~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 89 RWVTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIV--IS-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp EEECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEE--EC-TTSCEEEESCHHHHHHHHT
T ss_pred EECCHHHHhhcccccCcc-cceeeeeeccCCCCceEEE--Ec-CCceEEeeCCHHHHHHHHC
Confidence 334444444444333322 2257774344577999999 56 6778999999999999963
No 4
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=88.47 E-value=0.56 Score=36.26 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=21.6
Q ss_pred CCCCccceE-EECCCCceEEEEecCCCCeEE
Q 020958 46 KRKNQYRGI-RQRPWGKWAAEIRDPTKGVRV 75 (319)
Q Consensus 46 ~~~S~YRGV-r~r~~GKW~A~I~~~~~gK~i 75 (319)
..+|+|.|| +..+.+.|.|.-.+ +|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 568999999 46667999999994 56554
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=84.01 E-value=1.4 Score=39.62 Aligned_cols=42 Identities=14% Similarity=0.049 Sum_probs=32.8
Q ss_pred ceEEECCCCceEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHHh
Q 020958 52 RGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRI 97 (319)
Q Consensus 52 RGVr~r~~GKW~A~I~~~~~gK~i~LGtF~T~EEAArAYD~Aa~~l 97 (319)
.||++++.|.|+.+.. .+||++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5788888899998876 7899999996 8888877766554444
No 6
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=51.56 E-value=26 Score=26.91 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=29.6
Q ss_pred EECCCC--ceEEEEecCCCCeEEeecCcc--cHHHHHHHHHHHHHHh
Q 020958 55 RQRPWG--KWAAEIRDPTKGVRVWLGTFN--TAEEAARAYDAEARRI 97 (319)
Q Consensus 55 r~r~~G--KW~A~I~~~~~gK~i~LGtF~--T~EEAArAYD~Aa~~l 97 (319)
+-++.| .|.-+.+...+.+++-||.|. |.+||....+++...+
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 455544 399888843444568899996 5888887777666555
No 7
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=41.65 E-value=31 Score=25.97 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=22.7
Q ss_pred CCCCccceEEECCCCceEEEEecCCCCeEEe
Q 020958 46 KRKNQYRGIRQRPWGKWAAEIRDPTKGVRVW 76 (319)
Q Consensus 46 ~~~S~YRGVr~r~~GKW~A~I~~~~~gK~i~ 76 (319)
++.--+.|+.+|+.|+|+.++.+. .|++.+
T Consensus 7 kgr~L~~GesqR~dG~Y~yry~d~-~Gkr~~ 36 (69)
T 1b69_A 7 RGRILKTGESQRKDGRYLYKYIDS-FGEPQF 36 (69)
T ss_dssp SSSCCCTTEEECSSSCEEEEEECT-TSSEEE
T ss_pred CCCccCCCeEEccCCcEEEEEEcC-CCCEEE
Confidence 345668899999999999999974 355543
No 8
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=33.28 E-value=64 Score=25.66 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=28.8
Q ss_pred EECCCC--ceEEEEecCCCCeEEeecCcc--cHHHHHHHHHHHHHHh
Q 020958 55 RQRPWG--KWAAEIRDPTKGVRVWLGTFN--TAEEAARAYDAEARRI 97 (319)
Q Consensus 55 r~r~~G--KW~A~I~~~~~gK~i~LGtF~--T~EEAArAYD~Aa~~l 97 (319)
+-.+.| .|.-+.+...+.+++-||.|. |..+|....+.+...+
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 455554 399888833344568899996 5788877776665555
No 9
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=29.52 E-value=40 Score=24.34 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=18.7
Q ss_pred eEEeecCcccHHHHHHHHHHHHH
Q 020958 73 VRVWLGTFNTAEEAARAYDAEAR 95 (319)
Q Consensus 73 K~i~LGtF~T~EEAArAYD~Aa~ 95 (319)
-|+++|.|.+.++|.++..+...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47788899999999988776554
No 10
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=28.90 E-value=51 Score=24.09 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=19.4
Q ss_pred CeEEeecCcccHHHHHHHHHHHHH
Q 020958 72 GVRVWLGTFNTAEEAARAYDAEAR 95 (319)
Q Consensus 72 gK~i~LGtF~T~EEAArAYD~Aa~ 95 (319)
--|+.+|.|.+.++|.++..+...
T Consensus 45 ~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 45 WNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SEEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHHH
Confidence 357888999999999988766554
No 11
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=28.38 E-value=14 Score=34.97 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=14.9
Q ss_pred ccccc-cccceeecccccc
Q 020958 3 FASLY-DLVVLLVYEITFF 20 (319)
Q Consensus 3 AA~AY-D~Aalk~~g~~~~ 20 (319)
.|||| ++|.|||||..-.
T Consensus 4 ~a~a~~nialiKYwGk~d~ 22 (323)
T 3lto_A 4 FAQAPANIALIKYMGKKDE 22 (323)
T ss_dssp EEEEEEEEEEECCTTCBCT
T ss_pred EEEecchhHHhHhcCcccc
Confidence 47888 8999999998643
No 12
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=27.82 E-value=80 Score=25.68 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=30.4
Q ss_pred eEEEEecCCCCeEEeecCcccHHHHHHHHHHHHHHhcC
Q 020958 62 WAAEIRDPTKGVRVWLGTFNTAEEAARAYDAEARRIRG 99 (319)
Q Consensus 62 W~A~I~~~~~gK~i~LGtF~T~EEAArAYD~Aa~~l~G 99 (319)
|+|+|. .+..-+-++...+++.|..|...|+.+|-+
T Consensus 80 wva~Vk--~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 80 YVTPVK--AGRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEC--CCCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 999999 677777777778899999999999988754
No 13
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=24.60 E-value=43 Score=25.79 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=28.2
Q ss_pred CCCccceEEECCCCceEEEEecCCCCeEEeecCcccHHHHHHH
Q 020958 47 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTAEEAARA 89 (319)
Q Consensus 47 ~~S~YRGVr~r~~GKW~A~I~~~~~gK~i~LGtF~T~EEAArA 89 (319)
.--+||-||.-+ |||+|.+. .+..-..--.|..+|.|-|=
T Consensus 36 kmd~frdvw~lr-gkyvafvl--~ge~frrspafsvpesaqrw 75 (87)
T 2bn8_A 36 KMDSFRDVWMLR-GKYVAFVL--MGESFLRSPAFTVPESAQRW 75 (87)
T ss_dssp CTTTCTTEEEET-TEEEEBCC--SSSCCCBCCCBSSHHHHHHH
T ss_pred hcccchhheeec-cceEEEEE--echhhccCCccCCcHHHHHH
Confidence 456799998766 99999988 44333334578888877653
Done!