BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020960
         (319 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q58FX0|BAP2_ARATH BON1-associated protein 2 OS=Arabidopsis thaliana GN=BAP2 PE=1 SV=1
          Length = 207

 Score = 43.5 bits (101), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 10/158 (6%)

Query: 6   VEVCLISARGLRRSSSLWKLQWFAVGWIDPNNKYCTKIDASGKENPVWRTKFAAVVDDSN 65
           +E+ +ISA GL+      K + ++V  ID  + + +K+D  G   P+W+ +F   +   N
Sbjct: 10  LEIEVISAEGLKVDRKPLKKKTYSVVRIDEKS-WASKVDELGGSYPIWKDRFDMEM-PIN 67

Query: 66  FQDAALHVEVYSREPIFLRERLLGTATIALKEFLAKYSKNSEGSRSGIEEVGSYQLRKKN 125
                + +EVY R     R++ +G A I + +F+  ++        G     SY+LR + 
Sbjct: 68  ASVRFISIEVYYRTSGSGRDKNVGYAKIPVTDFMGGFAPQ------GHLNFLSYRLRDEY 121

Query: 126 SNKPQGFIDVSVCIS-EEREEPSSYPGNEGGIMLADHS 162
            +K  G ++VS+ +  +  +  SS P +   +   D++
Sbjct: 122 GDKC-GIVNVSIMVKPDGNDHKSSLPSSSFAVAPVDYA 158


>sp|O60130|YH7G_SCHPO Putative transcriptional regulatory protein C16G5.16
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=SPBC16G5.16 PE=1 SV=1
          Length = 827

 Score = 31.6 bits (70), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 85/222 (38%), Gaps = 35/222 (15%)

Query: 81  IFLRERLLGTATIALKEFLAKYSKNSEGSRS--GIEEVGSY---QLRKKNSNKPQGFIDV 135
           I+       T   A+K  L  Y  NS G+ +     +V         ++ SN P+ F   
Sbjct: 587 IYRESTYYSTIMEAIKNLLIAYDMNSSGTENLDATPDVTGQLPNNFSQRTSNIPREFPQA 646

Query: 136 SVCISEEREEPSSYPGNEGGIMLADHSNNFMLPTEGAPGQNYPTQRPLALLHRPDNQLQS 195
            +  S+     + YPG        +   NF +PT G   Q+    R            Q+
Sbjct: 647 QIFYSD-----APYPGYYNPAQFQNAPTNFPMPTYGGRTQDQSYPR------------QN 689

Query: 196 NYP-YNNSIPYSTNYSNLSHGGPSYAPAAGPSYRPPRTPPPPPPPVNVGYIPTFMPRTGN 254
            YP Y++   Y  +   +++G  S  P A   Y P  T  P P P N  Y P +M  T N
Sbjct: 690 GYPSYSDGNVYPHDRVMINYG--SSMPTANGFYVP-NTYSPVPFPYNTSY-PPYMSPTSN 745

Query: 255 L---SEAYVNMPSSGPP---ARGM--RPGFGMGVGAGALAAG 288
           +    +AY   P   PP   +  M   P  G+ +  GA  +G
Sbjct: 746 MPQAFQAYSQYPYQHPPFPLSEQMLPLPTSGVMMAPGAAKSG 787


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.135    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,279,434
Number of Sequences: 539616
Number of extensions: 7233550
Number of successful extensions: 44305
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 583
Number of HSP's that attempted gapping in prelim test: 34494
Number of HSP's gapped (non-prelim): 6393
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)