Query 020961
Match_columns 319
No_of_seqs 186 out of 1406
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 3.3E-77 7.2E-82 584.2 26.6 262 57-318 25-286 (389)
2 KOG2713 Mitochondrial tryptoph 100.0 6.4E-73 1.4E-77 526.2 18.4 231 78-319 13-247 (347)
3 COG0180 TrpS Tryptophanyl-tRNA 100.0 2.7E-72 5.9E-77 535.2 21.3 224 77-317 4-230 (314)
4 PRK12284 tryptophanyl-tRNA syn 100.0 3.2E-70 7E-75 539.1 22.7 224 78-317 2-233 (431)
5 PRK00927 tryptophanyl-tRNA syn 100.0 2.9E-69 6.3E-74 521.4 22.1 226 79-317 2-227 (333)
6 PRK12283 tryptophanyl-tRNA syn 100.0 1E-68 2.2E-73 524.4 23.9 233 79-317 3-295 (398)
7 PRK12556 tryptophanyl-tRNA syn 100.0 7.7E-69 1.7E-73 518.1 22.3 223 78-317 3-233 (332)
8 TIGR00233 trpS tryptophanyl-tR 100.0 2E-67 4.4E-72 507.6 21.7 222 77-317 1-224 (328)
9 PRK12282 tryptophanyl-tRNA syn 100.0 4.5E-66 9.7E-71 499.1 22.7 223 78-316 2-226 (333)
10 cd00806 TrpRS_core catalytic c 100.0 5.2E-66 1.1E-70 488.2 21.8 221 80-317 1-223 (280)
11 PRK12285 tryptophanyl-tRNA syn 100.0 2.2E-62 4.8E-67 478.7 20.7 211 77-317 65-283 (368)
12 PRK08560 tyrosyl-tRNA syntheta 100.0 2.6E-60 5.6E-65 458.4 18.7 213 77-317 29-246 (329)
13 PTZ00126 tyrosyl-tRNA syntheta 100.0 3.7E-59 8E-64 457.9 20.0 217 76-317 64-289 (383)
14 PF00579 tRNA-synt_1b: tRNA sy 100.0 9.9E-56 2.2E-60 418.4 17.8 221 76-317 3-230 (292)
15 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.1E-54 2.4E-59 449.9 19.9 216 77-316 31-253 (682)
16 cd00395 Tyr_Trp_RS_core cataly 100.0 3.5E-54 7.5E-59 406.3 20.5 206 80-312 1-227 (273)
17 cd00805 TyrRS_core catalytic c 100.0 2.7E-54 5.9E-59 406.0 17.5 207 79-315 1-226 (269)
18 PLN02486 aminoacyl-tRNA ligase 100.0 4.2E-50 9.1E-55 393.7 20.6 211 76-317 71-298 (383)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 8.9E-47 1.9E-51 373.6 19.3 208 77-315 32-263 (408)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 1.8E-44 3.9E-49 357.2 18.4 204 77-311 32-258 (410)
21 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 1.6E-44 3.5E-49 354.3 17.1 210 78-316 30-262 (377)
22 KOG2144 Tyrosyl-tRNA synthetas 100.0 7E-40 1.5E-44 306.0 11.0 212 77-317 33-254 (360)
23 COG0162 TyrS Tyrosyl-tRNA synt 100.0 1.5E-35 3.3E-40 291.7 15.0 213 78-316 32-264 (401)
24 KOG2145 Cytoplasmic tryptophan 100.0 7.5E-36 1.6E-40 279.3 10.5 210 76-316 83-310 (397)
25 PTZ00348 tyrosyl-tRNA syntheta 100.0 3.6E-32 7.8E-37 282.3 15.1 172 109-315 407-586 (682)
26 KOG2623 Tyrosyl-tRNA synthetas 99.7 1.4E-17 3E-22 161.8 13.1 194 78-299 63-286 (467)
27 cd00808 GluRS_core catalytic c 99.7 3.8E-16 8.2E-21 145.3 11.5 171 86-310 9-191 (239)
28 cd00802 class_I_aaRS_core cata 99.5 1.2E-13 2.6E-18 117.7 11.2 63 204-288 78-143 (143)
29 cd00418 GlxRS_core catalytic c 99.2 6.7E-11 1.5E-15 109.7 10.7 169 86-310 9-182 (230)
30 PRK05710 glutamyl-Q tRNA(Asp) 98.8 1.3E-08 2.7E-13 97.9 9.2 180 86-299 13-248 (299)
31 cd00674 LysRS_core_class_I cat 98.8 5.4E-08 1.2E-12 95.6 13.6 193 78-299 20-288 (353)
32 PRK01406 gltX glutamyl-tRNA sy 98.8 5E-08 1.1E-12 99.3 11.7 179 86-298 12-262 (476)
33 PRK00750 lysK lysyl-tRNA synth 98.8 6.7E-08 1.5E-12 99.1 12.7 59 215-299 233-293 (510)
34 PRK14895 gltX glutamyl-tRNA sy 98.7 9.8E-08 2.1E-12 97.7 11.7 179 80-289 4-246 (513)
35 TIGR00464 gltX_bact glutamyl-t 98.7 1.6E-07 3.5E-12 95.4 12.5 189 86-309 9-269 (470)
36 COG0008 GlnS Glutamyl- and glu 98.6 2.9E-07 6.3E-12 93.5 9.8 178 81-289 10-256 (472)
37 TIGR03838 queuosine_YadB gluta 98.6 1E-06 2.2E-11 83.8 12.8 192 86-309 8-253 (272)
38 cd00807 GlnRS_core catalytic c 98.4 1.1E-06 2.3E-11 82.2 9.8 156 86-289 9-170 (238)
39 cd09287 GluRS_non_core catalyt 98.4 1.1E-06 2.5E-11 82.1 9.8 158 83-288 6-171 (240)
40 PLN03233 putative glutamate-tR 98.4 1.6E-06 3.4E-11 89.1 11.3 176 80-288 11-251 (523)
41 PRK12410 glutamylglutaminyl-tR 98.4 1.2E-06 2.6E-11 88.2 10.1 88 86-182 7-104 (433)
42 PTZ00402 glutamyl-tRNA synthet 98.4 2.1E-06 4.6E-11 89.2 11.0 178 80-289 52-294 (601)
43 PLN02627 glutamyl-tRNA synthet 98.4 8E-06 1.7E-10 84.1 14.6 92 84-182 51-159 (535)
44 PF00749 tRNA-synt_1c: tRNA sy 98.4 4.5E-06 9.7E-11 80.8 12.1 192 86-310 9-274 (314)
45 PRK12558 glutamyl-tRNA synthet 98.3 1.2E-06 2.6E-11 88.5 7.2 87 86-181 10-106 (445)
46 PRK04156 gltX glutamyl-tRNA sy 98.3 8.1E-06 1.8E-10 84.7 12.4 180 79-288 102-343 (567)
47 PLN02907 glutamate-tRNA ligase 98.2 8.1E-06 1.8E-10 87.0 10.9 153 80-241 213-430 (722)
48 PLN02859 glutamine-tRNA ligase 98.1 1.6E-05 3.5E-10 84.8 10.9 177 80-289 264-505 (788)
49 cd02156 nt_trans nucleotidyl t 98.1 1.3E-05 2.7E-10 65.0 7.4 55 81-139 2-56 (105)
50 TIGR00467 lysS_arch lysyl-tRNA 98.1 2.3E-05 4.9E-10 80.7 10.6 81 78-161 19-129 (515)
51 PF01921 tRNA-synt_1f: tRNA sy 97.9 3.8E-05 8.3E-10 75.7 7.9 67 214-305 232-306 (360)
52 cd00671 ArgRS_core catalytic c 97.9 5.6E-05 1.2E-09 68.8 8.2 151 82-242 6-185 (212)
53 COG1384 LysS Lysyl-tRNA synthe 97.8 0.00021 4.6E-09 72.9 11.8 82 77-161 19-132 (521)
54 PRK01611 argS arginyl-tRNA syn 97.7 0.00011 2.3E-09 75.4 9.0 192 80-303 115-339 (507)
55 PRK05347 glutaminyl-tRNA synth 97.7 0.00013 2.8E-09 75.6 8.6 92 81-180 30-133 (554)
56 cd00668 Ile_Leu_Val_MetRS_core 97.7 0.00046 1E-08 66.2 11.9 64 86-150 10-100 (312)
57 TIGR00440 glnS glutaminyl-tRNA 97.6 0.00017 3.6E-09 74.4 7.9 88 86-181 8-105 (522)
58 PTZ00437 glutaminyl-tRNA synth 97.6 0.00016 3.5E-09 75.0 7.7 92 80-180 51-154 (574)
59 PRK14703 glutaminyl-tRNA synth 97.5 0.00022 4.9E-09 76.5 8.1 94 80-181 31-136 (771)
60 TIGR00463 gltX_arch glutamyl-t 97.5 0.00023 5E-09 73.9 7.7 93 79-180 92-196 (560)
61 PRK00260 cysS cysteinyl-tRNA s 97.5 0.00082 1.8E-08 68.4 11.6 74 77-150 22-110 (463)
62 cd00812 LeuRS_core catalytic c 97.4 0.00066 1.4E-08 65.5 8.8 65 86-150 10-87 (314)
63 cd00672 CysRS_core catalytic c 97.2 0.0044 9.6E-08 56.9 11.9 71 79-149 22-105 (213)
64 TIGR00435 cysS cysteinyl-tRNA 96.3 0.051 1.1E-06 55.5 12.4 73 79-151 23-108 (465)
65 PLN02946 cysteine-tRNA ligase 96.3 0.061 1.3E-06 56.2 12.7 73 76-149 78-165 (557)
66 KOG1149 Glutamyl-tRNA syntheta 95.0 0.041 9E-07 55.6 5.5 96 79-181 34-146 (524)
67 PRK00133 metG methionyl-tRNA s 94.8 0.09 2E-06 56.0 7.8 84 77-163 2-99 (673)
68 COG0143 MetG Methionyl-tRNA sy 94.1 0.17 3.6E-06 53.0 7.9 85 78-165 6-104 (558)
69 PF09334 tRNA-synt_1g: tRNA sy 93.6 0.29 6.4E-06 48.9 8.3 76 86-164 9-97 (391)
70 PLN02224 methionine-tRNA ligas 93.0 0.57 1.2E-05 49.7 9.8 74 78-151 70-157 (616)
71 KOG1147 Glutamyl-tRNA syntheta 92.6 0.28 6E-06 51.0 6.5 74 80-161 200-276 (712)
72 PRK00390 leuS leucyl-tRNA synt 91.9 0.67 1.5E-05 50.5 8.9 72 78-150 33-119 (805)
73 PRK12268 methionyl-tRNA synthe 91.4 0.57 1.2E-05 48.5 7.4 71 80-151 5-92 (556)
74 PLN02610 probable methionyl-tR 91.4 0.97 2.1E-05 49.4 9.3 86 77-165 17-117 (801)
75 PRK11893 methionyl-tRNA synthe 89.7 1 2.2E-05 45.9 7.4 66 86-151 11-89 (511)
76 TIGR00396 leuS_bact leucyl-tRN 89.7 1.4 3.1E-05 48.4 8.8 72 78-149 30-115 (842)
77 PRK14536 cysS cysteinyl-tRNA s 89.1 2.7 5.9E-05 43.5 9.8 76 75-150 20-119 (490)
78 TIGR00398 metG methionyl-tRNA 89.0 0.8 1.7E-05 47.2 6.0 65 87-151 10-87 (530)
79 cd00814 MetRS_core catalytic c 88.6 0.95 2.1E-05 43.7 5.9 65 87-151 11-88 (319)
80 PRK12267 methionyl-tRNA synthe 87.6 1 2.2E-05 47.8 5.9 66 86-151 14-92 (648)
81 PLN02563 aminoacyl-tRNA ligase 87.5 3.9 8.5E-05 45.7 10.5 74 78-151 111-201 (963)
82 TIGR00456 argS arginyl-tRNA sy 87.2 0.51 1.1E-05 49.3 3.3 66 218-310 330-396 (566)
83 cd00818 IleRS_core catalytic c 87.1 1.1 2.4E-05 43.8 5.4 36 87-122 12-52 (338)
84 cd00817 ValRS_core catalytic c 86.7 0.55 1.2E-05 46.6 3.1 35 87-121 12-51 (382)
85 PRK05743 ileS isoleucyl-tRNA s 86.4 0.58 1.3E-05 51.7 3.4 57 214-296 543-602 (912)
86 PRK11893 methionyl-tRNA synthe 86.1 0.41 9E-06 48.8 1.9 59 216-299 254-312 (511)
87 cd00818 IleRS_core catalytic c 83.4 0.99 2.1E-05 44.1 3.1 58 215-299 251-312 (338)
88 COG0495 LeuS Leucyl-tRNA synth 83.2 2.2 4.7E-05 46.8 5.8 74 77-151 34-124 (814)
89 cd00817 ValRS_core catalytic c 82.5 1.8 3.8E-05 43.0 4.6 59 216-299 296-356 (382)
90 PF00133 tRNA-synt_1: tRNA syn 81.8 1.1 2.3E-05 47.3 2.9 60 215-297 513-572 (601)
91 PRK12418 cysteinyl-tRNA synthe 81.7 1.1 2.4E-05 44.9 2.8 70 205-298 203-273 (384)
92 PRK14900 valS valyl-tRNA synth 81.5 1.1 2.3E-05 50.5 2.9 60 215-299 490-551 (1052)
93 TIGR00392 ileS isoleucyl-tRNA 80.0 1.5 3.2E-05 48.1 3.3 14 215-228 563-576 (861)
94 PRK12300 leuS leucyl-tRNA synt 79.8 1.3 2.8E-05 49.0 2.7 57 215-297 529-588 (897)
95 PTZ00419 valyl-tRNA synthetase 79.5 2.5 5.5E-05 47.2 4.9 45 78-122 61-111 (995)
96 PLN02843 isoleucyl-tRNA synthe 79.3 3.2 7E-05 46.4 5.7 75 78-152 33-137 (974)
97 PRK05729 valS valyl-tRNA synth 78.9 1.4 3E-05 48.5 2.6 60 214-298 471-532 (874)
98 cd00814 MetRS_core catalytic c 78.0 1.5 3.3E-05 42.2 2.4 59 216-299 235-293 (319)
99 TIGR00422 valS valyl-tRNA synt 77.1 5.9 0.00013 43.6 6.8 45 78-122 34-84 (861)
100 TIGR00395 leuS_arch leucyl-tRN 76.1 1.9 4.1E-05 47.9 2.7 61 215-299 572-633 (938)
101 PRK13208 valS valyl-tRNA synth 76.1 3.7 8.1E-05 44.7 4.9 70 78-147 39-135 (800)
102 TIGR03447 mycothiol_MshC cyste 76.0 1.9 4E-05 43.7 2.4 72 77-148 35-120 (411)
103 COG0215 CysS Cysteinyl-tRNA sy 75.9 1.9 4.2E-05 44.2 2.5 72 204-299 209-281 (464)
104 PRK13208 valS valyl-tRNA synth 75.4 2.7 5.9E-05 45.7 3.6 60 215-298 485-545 (800)
105 COG0018 ArgS Arginyl-tRNA synt 74.3 3.6 7.8E-05 43.4 4.1 69 217-308 336-405 (577)
106 PLN02286 arginine-tRNA ligase 74.2 4.1 8.8E-05 42.9 4.5 68 217-304 329-396 (576)
107 PLN02943 aminoacyl-tRNA ligase 73.9 2.8 6.1E-05 46.7 3.3 59 215-298 535-595 (958)
108 PLN02959 aminoacyl-tRNA ligase 73.0 3 6.6E-05 47.1 3.3 62 214-298 669-730 (1084)
109 TIGR00422 valS valyl-tRNA synt 72.6 3 6.4E-05 45.8 3.1 59 215-298 477-537 (861)
110 PRK13804 ileS isoleucyl-tRNA s 72.0 2.7 5.9E-05 46.9 2.6 16 213-228 580-595 (961)
111 PTZ00419 valyl-tRNA synthetase 71.2 4.3 9.3E-05 45.4 4.0 59 214-297 536-596 (995)
112 COG0018 ArgS Arginyl-tRNA synt 71.1 4.1 8.9E-05 43.0 3.6 42 82-123 123-170 (577)
113 PRK12267 methionyl-tRNA synthe 71.1 2.3 5E-05 45.1 1.8 58 216-298 254-311 (648)
114 PF01406 tRNA-synt_1e: tRNA sy 71.0 3.4 7.4E-05 40.2 2.7 74 76-150 6-94 (300)
115 KOG1148 Glutaminyl-tRNA synthe 70.9 7.1 0.00015 41.4 5.2 99 79-186 247-357 (764)
116 PRK05729 valS valyl-tRNA synth 70.4 5.7 0.00012 43.8 4.7 45 78-122 37-87 (874)
117 PF00750 tRNA-synt_1d: tRNA sy 69.8 5.4 0.00012 39.3 4.0 71 217-308 240-310 (354)
118 KOG0435 Leucyl-tRNA synthetase 68.8 6.6 0.00014 42.3 4.4 75 76-151 56-147 (876)
119 TIGR00456 argS arginyl-tRNA sy 67.8 5.2 0.00011 41.9 3.6 42 80-121 116-163 (566)
120 COG0525 ValS Valyl-tRNA synthe 67.1 3.6 7.8E-05 45.4 2.2 37 87-123 44-84 (877)
121 PRK12268 methionyl-tRNA synthe 66.1 4.2 9E-05 42.2 2.4 56 218-297 289-345 (556)
122 cd02168 NMNAT_Nudix Nicotinami 65.9 19 0.0004 32.3 6.3 67 85-160 8-77 (181)
123 PRK06039 ileS isoleucyl-tRNA s 64.9 4.4 9.6E-05 45.2 2.5 15 214-228 543-557 (975)
124 PRK12451 arginyl-tRNA syntheta 64.6 7.7 0.00017 40.7 4.0 63 217-303 326-388 (562)
125 PLN02843 isoleucyl-tRNA synthe 64.5 4.4 9.4E-05 45.4 2.3 16 213-228 561-576 (974)
126 PRK14534 cysS cysteinyl-tRNA s 64.3 16 0.00035 37.8 6.2 72 78-150 21-117 (481)
127 TIGR00398 metG methionyl-tRNA 64.2 6 0.00013 40.7 3.2 54 219-298 285-339 (530)
128 PF00133 tRNA-synt_1: tRNA syn 64.0 11 0.00025 39.7 5.2 47 77-123 23-75 (601)
129 PLN02381 valyl-tRNA synthetase 64.0 6.1 0.00013 44.7 3.3 60 214-298 606-667 (1066)
130 PRK12451 arginyl-tRNA syntheta 63.8 6.3 0.00014 41.3 3.3 39 82-120 119-163 (562)
131 PLN02563 aminoacyl-tRNA ligase 62.9 5.5 0.00012 44.6 2.7 28 214-241 614-642 (963)
132 PTZ00399 cysteinyl-tRNA-synthe 62.7 4.3 9.2E-05 43.5 1.8 71 205-299 257-328 (651)
133 PRK14535 cysS cysteinyl-tRNA s 62.7 36 0.00078 36.9 8.6 76 74-150 244-334 (699)
134 PLN02882 aminoacyl-tRNA ligase 62.3 7.5 0.00016 44.4 3.7 59 215-296 566-624 (1159)
135 PLN02286 arginine-tRNA ligase 62.2 5.7 0.00012 41.8 2.6 40 82-121 123-168 (576)
136 PRK14536 cysS cysteinyl-tRNA s 62.2 5.3 0.00012 41.4 2.3 73 200-297 217-290 (490)
137 PLN02381 valyl-tRNA synthetase 61.5 9.3 0.0002 43.2 4.2 45 78-122 129-179 (1066)
138 PRK14900 valS valyl-tRNA synth 61.1 5.2 0.00011 45.1 2.2 45 78-122 49-99 (1052)
139 PF02662 FlpD: Methyl-viologen 59.9 42 0.00091 28.2 7.0 70 84-159 33-103 (124)
140 COG0495 LeuS Leucyl-tRNA synth 59.9 7.4 0.00016 42.8 3.0 63 215-297 525-590 (814)
141 TIGR00396 leuS_bact leucyl-tRN 58.8 6.9 0.00015 43.1 2.6 26 215-240 519-545 (842)
142 TIGR00392 ileS isoleucyl-tRNA 58.1 9.2 0.0002 42.0 3.4 46 77-122 36-87 (861)
143 KOG0436 Methionyl-tRNA synthet 57.6 58 0.0012 33.7 8.5 65 87-151 50-127 (578)
144 cd02166 NMNAT_Archaea Nicotina 55.2 61 0.0013 28.3 7.5 66 85-160 8-77 (163)
145 PLN02660 pantoate--beta-alanin 54.7 48 0.001 32.1 7.3 26 216-241 146-171 (284)
146 PLN02224 methionine-tRNA ligas 54.3 10 0.00022 40.5 2.8 59 215-298 320-378 (616)
147 PRK05743 ileS isoleucyl-tRNA s 53.8 8.1 0.00018 42.9 2.1 74 78-151 50-152 (912)
148 PF00750 tRNA-synt_1d: tRNA sy 53.2 5.9 0.00013 39.0 0.8 41 82-122 26-72 (354)
149 TIGR03447 mycothiol_MshC cyste 51.9 70 0.0015 32.6 8.3 69 205-297 230-299 (411)
150 PLN02943 aminoacyl-tRNA ligase 51.3 18 0.00038 40.6 4.3 45 78-122 89-139 (958)
151 PRK00133 metG methionyl-tRNA s 51.1 11 0.00025 40.2 2.7 31 260-298 311-341 (673)
152 PRK00390 leuS leucyl-tRNA synt 49.8 11 0.00024 41.2 2.4 26 215-240 522-548 (805)
153 PTZ00427 isoleucine-tRNA ligas 49.4 16 0.00034 42.1 3.5 32 199-230 654-687 (1205)
154 TIGR00395 leuS_arch leucyl-tRN 48.3 8.7 0.00019 42.8 1.3 39 78-116 26-69 (938)
155 COG0060 IleS Isoleucyl-tRNA sy 47.8 27 0.00058 39.1 4.9 65 217-308 556-620 (933)
156 PRK14534 cysS cysteinyl-tRNA s 44.5 13 0.00027 38.6 1.7 66 208-298 225-291 (481)
157 PRK06039 ileS isoleucyl-tRNA s 43.0 21 0.00045 40.0 3.2 46 77-122 41-92 (975)
158 PTZ00399 cysteinyl-tRNA-synthe 43.0 1.1E+02 0.0024 33.0 8.5 75 76-151 58-149 (651)
159 PRK13804 ileS isoleucyl-tRNA s 42.7 15 0.00033 41.0 2.1 45 78-122 55-105 (961)
160 PRK12418 cysteinyl-tRNA synthe 42.6 97 0.0021 31.2 7.6 73 78-150 9-96 (384)
161 PLN02959 aminoacyl-tRNA ligase 41.4 14 0.00031 41.9 1.6 30 87-116 56-89 (1084)
162 PLN02610 probable methionyl-tR 40.8 10 0.00022 41.6 0.4 31 260-298 330-360 (801)
163 PF09334 tRNA-synt_1g: tRNA sy 39.7 5.6 0.00012 39.8 -1.7 54 219-298 285-339 (391)
164 PTZ00427 isoleucine-tRNA ligas 39.0 21 0.00045 41.1 2.5 45 78-122 103-153 (1205)
165 KOG2007 Cysteinyl-tRNA synthet 36.2 15 0.00033 38.3 0.8 39 199-239 241-280 (586)
166 PLN02882 aminoacyl-tRNA ligase 34.8 27 0.00058 40.1 2.5 45 78-122 39-89 (1159)
167 KOG0432 Valyl-tRNA synthetase 30.5 39 0.00085 37.6 2.7 36 88-123 87-126 (995)
168 PRK14535 cysS cysteinyl-tRNA s 29.0 19 0.0004 39.0 0.0 35 203-239 433-468 (699)
169 PRK01153 nicotinamide-nucleoti 28.3 2.4E+02 0.0053 24.9 7.1 30 81-117 4-35 (174)
170 COG0525 ValS Valyl-tRNA synthe 27.9 21 0.00045 39.7 0.1 14 279-296 522-535 (877)
171 COG1908 FrhD Coenzyme F420-red 27.8 2.2E+02 0.0049 24.4 6.2 90 60-159 11-104 (132)
172 PRK05379 bifunctional nicotina 27.7 2.1E+02 0.0045 28.0 7.1 34 78-117 7-41 (340)
173 TIGR00018 panC pantoate--beta- 26.4 2.6E+02 0.0056 27.1 7.3 26 216-241 143-168 (282)
174 PF01406 tRNA-synt_1e: tRNA sy 24.8 4.7E+02 0.01 25.6 8.7 70 205-299 195-265 (300)
175 COG4320 Uncharacterized protei 24.0 53 0.0011 32.7 2.1 27 88-120 62-88 (410)
176 COG0143 MetG Methionyl-tRNA sy 23.6 31 0.00067 36.5 0.5 30 262-299 317-346 (558)
177 PF01467 CTP_transf_2: Cytidyl 23.3 3.8E+02 0.0082 21.5 7.0 32 90-123 8-40 (157)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.3e-77 Score=584.17 Aligned_cols=262 Identities=76% Similarity=1.143 Sum_probs=236.7
Q ss_pred ceeeeccCCCCCCCCCCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHH
Q 020961 57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136 (319)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~l~~~~~ 136 (319)
+|+++.++..+.++.+++.-.+.++|+||||||.+|||||+|++++|++||++++++|+||||||+|.++++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~ 104 (389)
T PLN02886 25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR 104 (389)
T ss_pred hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence 34444444444445555555567899999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHcCCCCCCcEEEEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccC
Q 020961 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 216 (319)
Q Consensus 137 ~~~~~~lA~GlDp~k~~if~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~ 216 (319)
+++++|+||||||+|++||+||++++|.||+|+|+|.+++++|+|++|||++.+..+.+++++|+|+||+|||||||+|+
T Consensus 105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~ 184 (389)
T PLN02886 105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ 184 (389)
T ss_pred HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999998776546789999999999999999999
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020961 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 217 adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 296 (319)
+|+||||+||+||+|||||||+|||+.||.+..+++|++.+.+|++|++++++.+++||||+||.+|||||+|+++|+|+
T Consensus 185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~ 264 (389)
T PLN02886 185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRIN 264 (389)
T ss_pred CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEE
Confidence 99999999999999999999999999998655566666667789999999987668999999888899999997789999
Q ss_pred cCCCHHHHHHhhhccccCCCCC
Q 020961 297 LLDPKDVSHKFFRRFLTFLMNL 318 (319)
Q Consensus 297 L~Dspe~I~kKI~~A~Td~~~~ 318 (319)
|+|+||+|++|||+|+||+...
T Consensus 265 L~Ds~e~I~kKI~~a~TD~~~~ 286 (389)
T PLN02886 265 LLDPPDVIANKIKRCKTDSFPG 286 (389)
T ss_pred ecCCHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999998753
No 2
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-73 Score=526.23 Aligned_cols=231 Identities=56% Similarity=0.816 Sum_probs=220.3
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCc----EEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 020961 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE----TLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS 153 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~----~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~ 153 (319)
+.++|+||||||.+|||||+|++++|++||+.++ ++|+|+|+||+|.|+++.++|+++.++++.++|||+||+|+.
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~ 92 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS 92 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence 7899999999999999999999999999998543 799999999999999999999999999999999999999999
Q ss_pred EEEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHH
Q 020961 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (319)
Q Consensus 154 if~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLa 233 (319)
+|+||++++|.|+.|+|+|.++++||+||+|||++..+.+.+++++|+|+||+|||||||+|+++.||||+||.||+||+
T Consensus 93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~ 172 (347)
T KOG2713|consen 93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA 172 (347)
T ss_pred eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999987666789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcccc
Q 020961 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313 (319)
Q Consensus 234 RdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~T 313 (319)
|++|++||+.||++ +|++|+.++...++++++|.||.+|||||+|++.++|+|+|+|++|.+||+||.|
T Consensus 173 r~lA~~fN~~Y~~~-----------~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~T 241 (347)
T KOG2713|consen 173 RHLAQAFNKTYGTE-----------IFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQT 241 (347)
T ss_pred HHHHHHHhhhccCe-----------eecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhc
Confidence 99999999999975 4999999998745899999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 020961 314 FLMNLV 319 (319)
Q Consensus 314 d~~~~~ 319 (319)
|....|
T Consensus 242 D~~~~v 247 (347)
T KOG2713|consen 242 DNTSGV 247 (347)
T ss_pred ccccce
Confidence 987653
No 3
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-72 Score=535.21 Aligned_cols=224 Identities=55% Similarity=0.853 Sum_probs=212.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhcc-CcEEEEEeccceecCCCCH--HHHHHHHHHHHHHHHHcCCCCCCcE
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSKAS 153 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g-~~~~ilIaDlhA~t~~~~~--~~l~~~~~~~~~~~lA~GlDp~k~~ 153 (319)
.+++|+||++|||.||||||+|++++|+++|++ ++++|+|||+||+|.+.++ +.+++++++++++|+|+||||+|++
T Consensus 4 ~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~ 83 (314)
T COG0180 4 KKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKST 83 (314)
T ss_pred CCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccE
Confidence 578999999999999999999999999999998 5999999999999998766 8999999999999999999999999
Q ss_pred EEEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHH
Q 020961 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (319)
Q Consensus 154 if~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLa 233 (319)
||+||++++|.||+|+|+|.+++++|+|+++||++..+.+ +++++|+|.||+|||||||+|++++||||+||+||+||+
T Consensus 84 if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleLt 162 (314)
T COG0180 84 IFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELT 162 (314)
T ss_pred EEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHHH
Confidence 9999999999999999999999999999999999987765 689999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcccc
Q 020961 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313 (319)
Q Consensus 234 RdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~T 313 (319)
||||+|||+.||. +|++|+++++.. +++|||+++ +|||||+|+ |+|+|+|+|++|++||++|.|
T Consensus 163 RDiA~rfn~~y~~------------~f~~P~~~~~~~-~~i~gL~g~-~KMSkS~~n--s~I~L~D~~~~i~kKI~~~~t 226 (314)
T COG0180 163 RDIARRFNHLYGE------------VFPLPEALISKV-ARLPGLDGP-GKMSKSDPN--SAIFLLDDPKTIRKKIKKAAT 226 (314)
T ss_pred HHHHHHHHhhcCC------------ccCCccccccCC-CcccCCCCC-CcccccCCC--CeeeccCCHHHHHHHHHHhcc
Confidence 9999999999984 499999999976 799999766 999999984 899999999999999999999
Q ss_pred CCCC
Q 020961 314 FLMN 317 (319)
Q Consensus 314 d~~~ 317 (319)
|+.+
T Consensus 227 d~~~ 230 (314)
T COG0180 227 DGPT 230 (314)
T ss_pred CCCC
Confidence 9943
No 4
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.2e-70 Score=539.06 Aligned_cols=224 Identities=39% Similarity=0.645 Sum_probs=207.8
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhc--cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020961 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~--g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
..+|||||+|||.+|||||+|++++|+++|+ +++++|+||||||+|++.+++++++++++++++|+||||||+|++||
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if 81 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFY 81 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence 3589999999999999999999999999976 89999999999999988899999999999999999999999999999
Q ss_pred EcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhh---C---CCCcccccccchHHHhhhhhccCCCEEEecCcchHH
Q 020961 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (319)
Q Consensus 156 ~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~---~---~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~h 229 (319)
+||++++|.||+|+|+|.+++++|+|+++||++..+. + .+++++|+|+||+|||||||+|++|+||||+||+||
T Consensus 82 ~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qH 161 (431)
T PRK12284 82 RQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQH 161 (431)
T ss_pred ECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHH
Confidence 9999999999999999999999999999999875432 1 145899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhh
Q 020961 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFR 309 (319)
Q Consensus 230 ieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 309 (319)
+|||||||+|||+.||.+ +|++|+.++...+++|||| +| +|||||+ +|+|+|+|+|++|++|||
T Consensus 162 lELaRdIA~rFN~~yg~~-----------~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~ 225 (431)
T PRK12284 162 IEMARDIAQRFNHLYGGE-----------FFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIF 225 (431)
T ss_pred HHHHHHHHHHHhhhcCCc-----------ccCCCccccccccccccCC-CC-ccccCCC---CCEeeecCCHHHHHHHHh
Confidence 999999999999999753 4899999987666899999 56 6999998 489999999999999999
Q ss_pred ccccCCCC
Q 020961 310 RFLTFLMN 317 (319)
Q Consensus 310 ~A~Td~~~ 317 (319)
+|+||+.+
T Consensus 226 ~A~TDs~~ 233 (431)
T PRK12284 226 SIVTDSRA 233 (431)
T ss_pred cCCCCCCC
Confidence 99999864
No 5
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.9e-69 Score=521.43 Aligned_cols=226 Identities=60% Similarity=0.965 Sum_probs=212.1
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 020961 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QS 158 (319)
+++|+||+|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+||||||+|++||+||
T Consensus 2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS 81 (333)
T PRK00927 2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQS 81 (333)
T ss_pred CEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeC
Confidence 58999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHH
Q 020961 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (319)
Q Consensus 159 d~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaRdiA~ 238 (319)
+|++|.+++|+++|.+++++|+|+++||++.++.+ +++++|+|+||+|||||||++++|+||||+||+||+|||||||+
T Consensus 82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~ 160 (333)
T PRK00927 82 HVPEHAELAWILNCITPLGELERMTQFKDKSAKQK-ENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIAR 160 (333)
T ss_pred CCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhccC-CCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999998865433 67899999999999999999999999999999999999999999
Q ss_pred HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCC
Q 020961 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 239 r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
+||++||. +|++|+++++..+++||||+++++|||||+|++.|+|+|+|+|++|++|||+|+||+.+
T Consensus 161 ~~n~~~~~------------~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~ 227 (333)
T PRK00927 161 RFNNLYGE------------VFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSER 227 (333)
T ss_pred Hhhhhccc------------cCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCc
Confidence 99999874 48899999976568999996665699999986669999999999999999999999864
No 6
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-68 Score=524.42 Aligned_cols=233 Identities=40% Similarity=0.702 Sum_probs=211.6
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 020961 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~~~-~~~~l~~~~~~~~~~~lA~GlDp~k~~if~Q 157 (319)
.+||+||||||.+|||||+|++++|+++|++++++|+||||||+|++. +++++++++++++++|+||||||+|++||+|
T Consensus 3 ~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~Q 82 (398)
T PRK12283 3 DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQ 82 (398)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 579999999999999999999999999999999999999999999854 9999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHH
Q 020961 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236 (319)
Q Consensus 158 Sd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaRdi 236 (319)
|++++|++|+|+|+|.+++++|+|+++||++..+.. .++.++|+++||+|||||||+|++|+||||+||+||+||||||
T Consensus 83 S~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRdI 162 (398)
T PRK12283 83 SKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREI 162 (398)
T ss_pred CCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHHH
Confidence 999999999999999999999999999999876531 3568999999999999999999999999999999999999999
Q ss_pred HHHhhhhhCCccc----------------------------------------------------------cccCCCCCc
Q 020961 237 AERVNYLYGGRKW----------------------------------------------------------KKLGGRGGA 258 (319)
Q Consensus 237 A~r~n~~yg~~~~----------------------------------------------------------~~~~~~~~~ 258 (319)
|+|||+.||.+.+ ...++.++.
T Consensus 163 A~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (398)
T PRK12283 163 ARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKI 242 (398)
T ss_pred HHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCCc
Confidence 9999999985210 011234456
Q ss_pred cccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCC
Q 020961 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 259 ~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
+|++|+++++.. ++|||| || +|||||+ +|+|+|+|+|++|++|||+|+||+..
T Consensus 243 ~~~~P~~~~~~~-~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~a~TDs~~ 295 (398)
T PRK12283 243 ILPEPQALLTEA-SKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPAR 295 (398)
T ss_pred ccCCCcccccCC-CcccCC-CC-CcCCCCC---CCeeeCcCCHHHHHHHHHhCCCCCcc
Confidence 799999998664 999999 78 7999996 48999999999999999999999864
No 7
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.7e-69 Score=518.12 Aligned_cols=223 Identities=40% Similarity=0.644 Sum_probs=205.1
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccC--cEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020961 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~--~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
+.++||||||||.+|||||+|++++|+++|+.+ +++|+||||||+|.+++++++++++++++++|+||||||+|++||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 468999999999999999999999999998744 599999999999878899999999999999999999999999999
Q ss_pred EcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC------CCCcccccccchHHHhhhhhccCCCEEEecCcchHH
Q 020961 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (319)
Q Consensus 156 ~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~------~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~h 229 (319)
+||++++|.+|+|+++|.++++||+|+++||++..... ++++++|+++||+|||||||+|++|+||||+||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 99999999999999999999999999999999865321 235799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhh
Q 020961 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFR 309 (319)
Q Consensus 230 ieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 309 (319)
+|||||||+|||+.||. .|++|+.++++..+++||| +| +|||||++ |+|+|+|+|++|++||+
T Consensus 163 leLtRdiA~rfn~~yg~------------~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~~---n~I~L~D~p~~I~kKI~ 225 (332)
T PRK12556 163 IEIARDIATYFNHTFGD------------TFTLPEYVIQEEGAILPGL-DG-RKMSKSYG---NVIPLFAEQEKLRKLIF 225 (332)
T ss_pred HHHHHHHHHHHHHhccc------------cCCCceeccccccccccCC-CC-CCCCCCCC---CcccccCCHHHHHHHHH
Confidence 99999999999999985 3888999876555889999 67 69999984 78999999999999999
Q ss_pred ccccCCCC
Q 020961 310 RFLTFLMN 317 (319)
Q Consensus 310 ~A~Td~~~ 317 (319)
+|+||++.
T Consensus 226 ka~Td~~~ 233 (332)
T PRK12556 226 KIKTDSSL 233 (332)
T ss_pred HhccCCCc
Confidence 99999864
No 8
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=2e-67 Score=507.64 Aligned_cols=222 Identities=49% Similarity=0.683 Sum_probs=207.7
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCC--CHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~~~--~~~~l~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
+++++|+||+|||.+|||||+++++.|..+|.+++++|+||||||+|++. +++.+++++++++++|+||||||+|++|
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 80 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI 80 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence 36799999999999999999999999998888999999999999999866 8899999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHH
Q 020961 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (319)
Q Consensus 155 f~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaR 234 (319)
|+||++++|+++.|+|+|.+++++|+|+.+||++.. .+++++|+|+||+|||||||+|++|+||||+||+||+||||
T Consensus 81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR 157 (328)
T TIGR00233 81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR 157 (328)
T ss_pred EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence 999999999999999999999999999999998752 25789999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccC
Q 020961 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTF 314 (319)
Q Consensus 235 diA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td 314 (319)
|||+|||+.||. +|++|++++++..++|||| +| +|||||+| +|+|+|+|+||+|++||++|+||
T Consensus 158 dia~r~n~~~~~------------~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~--~s~I~L~D~~e~I~~KI~~a~td 221 (328)
T TIGR00233 158 DLAERFNKKFKN------------FFPKPESLISKFFPRLMGL-SG-KKMSKSDP--NSAIFLTDTPKQIKKKIRKAATD 221 (328)
T ss_pred HHHHHhhhhcCc------------ccCCChhhhccccCCCCCC-CC-CcCCCCCC--CCeEeecCCHHHHHHHHHhcCCC
Confidence 999999999973 4889999998766889998 55 79999997 48999999999999999999999
Q ss_pred CCC
Q 020961 315 LMN 317 (319)
Q Consensus 315 ~~~ 317 (319)
+.+
T Consensus 222 ~~~ 224 (328)
T TIGR00233 222 GGR 224 (328)
T ss_pred CCC
Confidence 874
No 9
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=4.5e-66 Score=499.14 Aligned_cols=223 Identities=37% Similarity=0.566 Sum_probs=207.0
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020961 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
+.++|||++|||.+|||||++++.+|++||+.++++|+||||||+++ +.+++++++++++++++|+|+||||+|++||+
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 46899999999999999999999999999997789999999999997 68999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHH
Q 020961 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (319)
Q Consensus 157 QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaRd 235 (319)
||+|++|.++.|+++|.++++|++|+.+||++....+ ++++++|+++||+||||||++|++|+||||+||+||+||+||
T Consensus 82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd 161 (333)
T PRK12282 82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE 161 (333)
T ss_pred CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999998755443 367899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCC
Q 020961 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFL 315 (319)
Q Consensus 236 iA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~ 315 (319)
+|+|||+.||+. +|..|++++.. +++|||| +|.+|||||++ |+|+|+|+||+|++||++|+||+
T Consensus 162 iA~~~n~~~~~~-----------~~~~p~~~~~~-~~~i~~L-~g~~KMSKS~~---~~I~L~D~pe~I~kKI~~A~td~ 225 (333)
T PRK12282 162 IVRRFNSLYGTD-----------VLVEPEALLPE-AGRLPGL-DGKAKMSKSLG---NAIYLSDDADTIKKKVMSMYTDP 225 (333)
T ss_pred HHHHHhhhcCCc-----------cccCchhcccC-CCcccCC-CCCCcCCCCCC---CeeeeeCCHHHHHHHHHhCcCCC
Confidence 999999998753 48889988865 4899999 77789999984 79999999999999999999996
Q ss_pred C
Q 020961 316 M 316 (319)
Q Consensus 316 ~ 316 (319)
.
T Consensus 226 ~ 226 (333)
T PRK12282 226 N 226 (333)
T ss_pred C
Confidence 3
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=5.2e-66 Score=488.16 Aligned_cols=221 Identities=50% Similarity=0.789 Sum_probs=209.2
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 020961 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (319)
Q Consensus 80 ~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~-~~~~l~~~~~~~~~~~lA~GlDp~k~~if~Q 157 (319)
++|+||+|||.+|||||++++.+|++||+ +++++|+|||+||+|++. +++++++++++++++|+|+||||+|++||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 58999999999999999999999999999 999999999999999977 9999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHH
Q 020961 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (319)
Q Consensus 158 Sd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaRdiA 237 (319)
|++++|.++.|+|+|.+++++|+|+.+||++.+. .+++++|+|+||+||||||++|++|+||||+||+||+||+||+|
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia 158 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA 158 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999998653 36789999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCC
Q 020961 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 238 ~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
+|||++||. .|++|++++++ +++||||++|++|||||++ +|+|+|+|+|++|++|||+|+||+.+
T Consensus 159 ~r~n~~~~~------------~~~~P~~l~~~-~~~i~~l~g~~~KMSKS~~--~~~I~L~d~~~~i~~KI~~a~td~~~ 223 (280)
T cd00806 159 RRFNKLYGE------------IFPKPAALLSK-GAFLPGLQGPSKKMSKSDP--NNAIFLTDSPKEIKKKIMKAATDGGR 223 (280)
T ss_pred HHhcccccc------------ccCCCeeeccC-CCccccCCCCCCcccCCCC--CCeEEeeCCHHHHHHHHHhccCCCCC
Confidence 999999874 48999999986 4899999777789999997 59999999999999999999999875
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-62 Score=478.67 Aligned_cols=211 Identities=27% Similarity=0.344 Sum_probs=198.4
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
+++++|||++|||.||||||++ +.+|++||+ |++++|+|||+||+++ ..+++++++++++++++|+||||||+|++|
T Consensus 65 ~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i 143 (368)
T PRK12285 65 KPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEI 143 (368)
T ss_pred CCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 5889999999999999999986 689999999 7999999999999998 679999999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhc------cCCCEEEecCcchH
Q 020961 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQKQ 228 (319)
Q Consensus 155 f~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~------~~adivpvG~DQ~~ 228 (319)
|+||+++++.++.|.++|.+++++|+|+.+|+ +++++|+++||+|||||||+ +++|+||||+||+|
T Consensus 144 ~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~ 215 (368)
T PRK12285 144 YFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDP 215 (368)
T ss_pred EECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchHH
Confidence 99999999999999999999999999998874 46799999999999999999 88999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhh
Q 020961 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFF 308 (319)
Q Consensus 229 hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI 308 (319)
|+|||||+|+|||+.|| |++|+++++ +++||| +| +|||||+| +|+|+|+|+|++|++||
T Consensus 216 h~~ltRdiA~r~n~~~g--------------f~~P~~l~~---~~lpgL-~G-~KMSkS~~--~s~I~L~D~p~~I~kKI 274 (368)
T PRK12285 216 HIRLTRDIAERLHGGYG--------------FIKPSSTYH---KFMPGL-TG-GKMSSSKP--ESAIYLTDDPETVKKKI 274 (368)
T ss_pred HHHHHHHHHHHHhhhcC--------------CCCchhHhh---hcccCC-CC-CcCCCCCC--CCeeeccCCHHHHHHHH
Confidence 99999999999999987 678999997 679999 56 79999998 59999999999999999
Q ss_pred hccccCCCC
Q 020961 309 RRFLTFLMN 317 (319)
Q Consensus 309 ~~A~Td~~~ 317 (319)
|+|+||+..
T Consensus 275 ~kA~Td~~~ 283 (368)
T PRK12285 275 MKALTGGRA 283 (368)
T ss_pred HhCcCCCCc
Confidence 999999764
No 12
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.6e-60 Score=458.38 Aligned_cols=213 Identities=24% Similarity=0.370 Sum_probs=192.4
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~-~~~~~l~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
+++++|+||+|||.+||||++ .+.+|++||+ +++++|+||||||++++ .+++++++++++++++|+|+|+||+|++|
T Consensus 29 ~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i 107 (329)
T PRK08560 29 EEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEF 107 (329)
T ss_pred CCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEE
Confidence 578999999999999999987 4789999999 99999999999999995 69999999999999999999999999999
Q ss_pred EEcccchhhhH---HHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHH
Q 020961 155 FVQSHVRAHVE---LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (319)
Q Consensus 155 f~QSd~~~~~e---l~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hie 231 (319)
|+||+|++|.+ +.|.++|.+++++++|+.+++.+ . . ++.++|+|+||+|||||||+|++|+||||.||+||++
T Consensus 108 ~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~ 183 (329)
T PRK08560 108 VLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHM 183 (329)
T ss_pred EecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHH
Confidence 99999988865 44449999999999999887642 2 1 3459999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcc
Q 020961 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRF 311 (319)
Q Consensus 232 LaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A 311 (319)
|+||+|+|||+ ..|.+++. ++||||+++++|||||+| +|+|+|+|+|++|++|||+|
T Consensus 184 l~Rdia~~~n~------------------~~p~~l~~---~~l~~L~g~~~KMSKS~p--~~~I~L~D~~~~I~~KI~kA 240 (329)
T PRK08560 184 LAREVLPKLGY------------------KKPVCIHT---PLLTGLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIKKA 240 (329)
T ss_pred HHHHhhHhcCC------------------CCceEEEc---CccCCCCCCCCCCcCCCC--CCeecccCCHHHHHHHHHhc
Confidence 99999999993 35888876 679999666569999997 69999999999999999999
Q ss_pred ccCCCC
Q 020961 312 LTFLMN 317 (319)
Q Consensus 312 ~Td~~~ 317 (319)
+||+.+
T Consensus 241 ~t~~~~ 246 (329)
T PRK08560 241 YCPPGE 246 (329)
T ss_pred cCCCCC
Confidence 999964
No 13
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.7e-59 Score=457.94 Aligned_cols=217 Identities=21% Similarity=0.295 Sum_probs=192.8
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 020961 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~---~~~~~l~~~~~~~~~~~lA~GlDp~k 151 (319)
.+++++|+||+|||++||||++..+.+|++||+ |++++|+||||||++++ +++++++++++|++++|+|+|+||+|
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k 143 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDN 143 (383)
T ss_pred CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 367899999999999999996544458999999 89999999999999984 68999999999999999999999999
Q ss_pred cEEEEccc-chhhhHHHHHHhcc----CCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcc
Q 020961 152 ASVFVQSH-VRAHVELMWLLSSA----TPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (319)
Q Consensus 152 ~~if~QSd-~~~~~el~w~L~~~----~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ 226 (319)
++||+||+ +++|.+++|++.+. ++++|++|+.+++++.. .++.++|+|+||+||||||++|++|+||||+||
T Consensus 144 ~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ 220 (383)
T PTZ00126 144 VRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMDQ 220 (383)
T ss_pred eEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCccH
Confidence 99999998 57899999987654 69999999999875432 246789999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHH
Q 020961 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHK 306 (319)
Q Consensus 227 ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~k 306 (319)
+||+|||||+|++||+.| .|..+++ ++||||+||.+|||||+| +++|+|+|+|++|++
T Consensus 221 ~~~~~LaRdia~~~~~~~-----------------~~~~~~~---~~lpgL~dg~~KMSKS~~--ns~I~L~Dspe~I~k 278 (383)
T PTZ00126 221 RKVNMLAREYCDKKKIKK-----------------KPIILSH---HMLPGLLEGQEKMSKSDP--NSAIFMEDSEEDVNR 278 (383)
T ss_pred HHHHHHHHHHHHHhCCCC-----------------Cceeecc---cccccCCCCCCCCCcCCC--CCeecCCCCHHHHHH
Confidence 999999999999999532 3555543 789999888899999998 589999999999999
Q ss_pred hhhccccCCCC
Q 020961 307 FFRRFLTFLMN 317 (319)
Q Consensus 307 KI~~A~Td~~~ 317 (319)
|||+|+||+..
T Consensus 279 KI~kA~t~p~~ 289 (383)
T PTZ00126 279 KIKKAYCPPGV 289 (383)
T ss_pred HHHhCcCCCCC
Confidence 99999999853
No 14
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=9.9e-56 Score=418.35 Aligned_cols=221 Identities=36% Similarity=0.569 Sum_probs=199.7
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC---CHHHHHHHHHHHHHH--HHHcCCCC
Q 020961 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGIDN 149 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~---~~~~l~~~~~~~~~~--~lA~GlDp 149 (319)
.+++++|+||+|||.|||||++ .+.+|++||+ |++++|+|||+||++++. +++.+++++++++.. ++|+|+||
T Consensus 3 ~~~~~~y~G~~PTg~lHlG~l~-~~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~ 81 (292)
T PF00579_consen 3 NKPFRVYTGIDPTGDLHLGHLV-PIMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDP 81 (292)
T ss_dssp HSSEEEEEEEESSSS-BHHHHH-HHHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHT
T ss_pred CCCcEEEEeECCCCcccchHHH-HHHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3688999999999999999655 5789999996 899999999999999944 589999999999999 99999999
Q ss_pred CCcEEEEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhhccCCCEEEecCcchH
Q 020961 150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (319)
Q Consensus 150 ~k~~if~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~ 228 (319)
+++.||+||+|+++.++.|++.+..+..+|+|+.+++++..+.+ ++++++|+|+||+||||||+++++|+||||.||++
T Consensus 82 ~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~ 161 (292)
T PF00579_consen 82 EKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQRG 161 (292)
T ss_dssp TTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGHH
T ss_pred cceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHHH
Confidence 99999999999999999999999999999999999998766665 35899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhh
Q 020961 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFF 308 (319)
Q Consensus 229 hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI 308 (319)
|++++||+|+|+|++ . .|++|..+++ +++|++ +|.+|||||++ +++|+|+|++++|++||
T Consensus 162 ~~~l~rd~a~k~~~~---~-----------~~~~p~~l~~---~~l~~l-~G~~KMSKS~~--ns~I~L~d~~~~i~~Ki 221 (292)
T PF00579_consen 162 HIELARDLARKFNYK---E-----------IFPKPAGLTS---PLLPGL-DGQKKMSKSDP--NSAIFLDDSPEEIRKKI 221 (292)
T ss_dssp HHHHHHHHHHHHTHH---S-----------TSSS-EEEEE---TCBBST-TSSSBTTTTTT--GGS-BTTTTHHHHHHHH
T ss_pred HHHHHHHHHhhhccc---c-----------cccCchheee---cccccc-CCccccCccCC--ccEEEEeccchhHHHHH
Confidence 999999999999976 1 3778999998 569998 78779999998 37999999999999999
Q ss_pred hccccCCCC
Q 020961 309 RRFLTFLMN 317 (319)
Q Consensus 309 ~~A~Td~~~ 317 (319)
++|+||+.+
T Consensus 222 ~~a~~~~~~ 230 (292)
T PF00579_consen 222 KKAFCDPDR 230 (292)
T ss_dssp HHSHTSTTS
T ss_pred HHHhhCCCc
Confidence 999999975
No 15
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-54 Score=449.89 Aligned_cols=216 Identities=23% Similarity=0.343 Sum_probs=188.9
Q ss_pred CCceEEEeeCCCCcchhhhH-HHHHHHHHHHhccCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 020961 77 VKKRIVSGVQPTGSIHLGNY-LGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhy-lg~l~~~~~lQ~g~~~~ilIaDlhA~t~~---~~~~~l~~~~~~~~~~~lA~GlDp~k~ 152 (319)
+++++|+||+|||++||||+ +++++.|..+|+|++++|+||||||+|++ .++++++.++++++++|+|+|+||+|+
T Consensus 31 ~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~ 110 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 110 (682)
T ss_pred CCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 46799999999999999994 66667777778899999999999999974 478999999999999999999999999
Q ss_pred EEEEccc-chhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC--CCCcccccccchHHHhhhhhccCCCEEEecCcchHH
Q 020961 153 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (319)
Q Consensus 153 ~if~QSd-~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~--~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~h 229 (319)
+||+||+ +++|.+++|.+ .++++++.++.++|++....+ ++++++|+++||+|||||||+|++|+||||+||+||
T Consensus 111 ~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~qh 188 (682)
T PTZ00348 111 LFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRKV 188 (682)
T ss_pred EEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHHH
Confidence 9999998 78899999998 567888888888887543222 235899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhh
Q 020961 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFR 309 (319)
Q Consensus 230 ieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 309 (319)
+|||||+|++||+.| .|..+.+ ++||||++|++|||||+| +|+|+|+|+|++|++|||
T Consensus 189 ~eLaRdia~~~g~~~-----------------kpvil~~---~~LpGL~gg~~KMSKS~p--~naI~L~Dspe~I~kKI~ 246 (682)
T PTZ00348 189 NMLAREYCDLIGRKL-----------------KPVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARKIR 246 (682)
T ss_pred HHHHHHHHHHhCCCC-----------------Cceeccc---ccCcCCCCCCCcCCCCCC--CCeecccCCHHHHHHHHH
Confidence 999999999998432 2444443 789999878789999997 599999999999999999
Q ss_pred ccccCCC
Q 020961 310 RFLTFLM 316 (319)
Q Consensus 310 ~A~Td~~ 316 (319)
+|+||+.
T Consensus 247 kA~td~~ 253 (682)
T PTZ00348 247 QAYCPRV 253 (682)
T ss_pred hCCCCCC
Confidence 9999974
No 16
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=3.5e-54 Score=406.28 Aligned_cols=206 Identities=29% Similarity=0.444 Sum_probs=186.7
Q ss_pred eEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC----------CHHHHHHHHHHHHHHHHHcCC
Q 020961 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI 147 (319)
Q Consensus 80 ~i~tGi~PTG-~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~----------~~~~l~~~~~~~~~~~lA~Gl 147 (319)
.+|+||+||| .+|||||++ +.+|++||+ |++++++|||+||+++.. +++++++++++++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999 699999999 899999999 899999999999999843 789999999999999999999
Q ss_pred C--CCCcEEEEcccch---hhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCC----C
Q 020961 148 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D 218 (319)
Q Consensus 148 D--p~k~~if~QSd~~---~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~a----d 218 (319)
| |+|++||.||+|+ ++.++.|.+++.+++++|.|+.+||++. + +++++|+|+||+||||||+++++ |
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~---~-~~~~~~~~~Yp~lQaaD~l~l~~~~~~~ 155 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRS---E-EGISATEFTYPPLQAADFLLLNTTEGCD 155 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHh---c-CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence 9 9999999999998 8999999999999999999999999764 2 46899999999999999999988 9
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 020961 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (319)
Q Consensus 219 ivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 298 (319)
+||||.||++|++++||+|+|||. ++.|..++. ++||+| +| .|||||.++.-..|+++
T Consensus 156 ~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~---p~l~~l-~G-~KMSKS~~~~i~l~~~~ 213 (273)
T cd00395 156 IQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTI---PLVTKL-DG-PKFGKSESGPKWLDTEK 213 (273)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEee---ccccCC-CC-CcCCCCCCCCccccccC
Confidence 999999999999999999999982 456888887 679999 67 49999986322225579
Q ss_pred CCHHHHHHhhhccc
Q 020961 299 DPKDVSHKFFRRFL 312 (319)
Q Consensus 299 Dspe~I~kKI~~A~ 312 (319)
|+|++|++||++|+
T Consensus 214 dsp~~i~~ki~~a~ 227 (273)
T cd00395 214 TSPYEFYQFWINAV 227 (273)
T ss_pred CCHHHHHHHHHccc
Confidence 99999999999987
No 17
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.7e-54 Score=405.99 Aligned_cols=207 Identities=23% Similarity=0.250 Sum_probs=185.5
Q ss_pred ceEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHHcC
Q 020961 79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG 146 (319)
Q Consensus 79 ~~i~tGi~PTG-~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~---------~~~~~l~~~~~~~~~~~lA~G 146 (319)
.++|+||+||| .+|||||+++ .+|++||+ |++++|+|||+||+++ + .+++++++++++++++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999 7999999985 69999999 8999999999999998 5 589999999999999999999
Q ss_pred CC--CCCcEEEEcccchhhhHHHHH----HhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEE
Q 020961 147 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (319)
Q Consensus 147 lD--p~k~~if~QSd~~~~~el~w~----L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adiv 220 (319)
+| |+|++||+||+|+++ ++|+ +++.++++++.|+.+|+++... .+++++|+|+||+||||||+++++|+|
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~ 155 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ 155 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence 96 999999999999988 6777 9999999999999999976532 357899999999999999999999999
Q ss_pred EecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCe-eecCC
Q 020961 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR-INLLD 299 (319)
Q Consensus 221 pvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~-I~L~D 299 (319)
|||.||++|++++||+|+|||+. .|..+.+ ++||++ +| +|||||.++ +. |+++|
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~~~------------------~~~~l~~---~ll~~l-~G-~KMSKS~~~--~~~i~l~d 210 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLGYK------------------KVVGLTT---PLLTGL-DG-GKMSKSEGN--AIWDPVLD 210 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhCCC------------------CcEEEee---ccccCC-CC-CcccCCCCC--cccccCCC
Confidence 99999999999999999999732 2545554 679999 67 599999973 34 69999
Q ss_pred CHHHHHHhhhccccCC
Q 020961 300 PKDVSHKFFRRFLTFL 315 (319)
Q Consensus 300 spe~I~kKI~~A~Td~ 315 (319)
+|++|++||++|+||+
T Consensus 211 sp~~i~~Ki~~a~~~~ 226 (269)
T cd00805 211 SPYDVYQKIRNAFDPD 226 (269)
T ss_pred CHHHHHHHHHcCCcHH
Confidence 9999999999999983
No 18
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.2e-50 Score=393.66 Aligned_cols=211 Identities=19% Similarity=0.269 Sum_probs=178.8
Q ss_pred CCCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 020961 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~-lHLGhylg~l~~~~~lQ~--g~~~~ilIaDlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~k 151 (319)
.+++++|+|++|||. |||||+++++ ...+||+ ++.++|+|||+|+++. ..+++++++++++++++|+|+||||+|
T Consensus 71 ~~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~k 149 (383)
T PLN02486 71 GEKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVER 149 (383)
T ss_pred CCCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 347899999999995 9999999976 3335887 5788999999999998 568999999999999999999999999
Q ss_pred cEEEEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhh------ccCC-----CE
Q 020961 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS-----DF 219 (319)
Q Consensus 152 ~~if~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl------~~~a-----di 219 (319)
++||.|++|. .+++|.... ++.|+.+++++.+.++ .++.++|+++||+||||||| .++. |+
T Consensus 150 t~I~s~~~~~--~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~l 222 (383)
T PLN02486 150 TFIFSDFDYV--GGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCL 222 (383)
T ss_pred eEEEeccHHH--hHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcce
Confidence 9999777653 345444322 5668888888877766 45679999999999999998 4554 89
Q ss_pred EEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 020961 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (319)
Q Consensus 220 vpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 299 (319)
||||+||+||++||||+|+|||+ .+|..+++ .++|+|+++.+|||||.| +|+|+|+|
T Consensus 223 VPvG~DQd~~~~ltRdia~r~~~------------------~kp~~~~~---~~lp~L~g~~~KMSkS~~--nsaI~L~D 279 (383)
T PLN02486 223 IPCAIDQDPYFRMTRDVAPRLGY------------------YKPALIES---RFFPALQGESGKMSASDP--NSAIYVTD 279 (383)
T ss_pred eecccchHHHHHHHHHHHHHhCC------------------CCcceecc---ccccCCCCCCCcCcCcCC--CCeeeccC
Confidence 99999999999999999999983 25877765 789999777789999997 58999999
Q ss_pred CHHHHHHhhhc-cccCCCC
Q 020961 300 PKDVSHKFFRR-FLTFLMN 317 (319)
Q Consensus 300 spe~I~kKI~~-A~Td~~~ 317 (319)
+|++|++||++ |+||+..
T Consensus 280 ~p~~i~~KI~k~A~t~~~~ 298 (383)
T PLN02486 280 TPKEIKNKINKYAFSGGQD 298 (383)
T ss_pred CHHHHHHHHhcCCCCCCCC
Confidence 99999999999 9999763
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=8.9e-47 Score=373.55 Aligned_cols=208 Identities=20% Similarity=0.229 Sum_probs=180.1
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 020961 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~l~~~~~~~~~~~lA 144 (319)
+++++|+||+|||. +|||||++ +.+|++||+ |++++++|||+||+++ |. +.+++++|+.++.. .++
T Consensus 32 ~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i~~-ql~ 109 (408)
T PRK05912 32 EPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETIKE-QLF 109 (408)
T ss_pred CCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHHHH-HHH
Confidence 57899999999995 99999996 789999999 8999999999999997 42 56788889877644 559
Q ss_pred cCCCCCC--cEEEEcccchhhhHHHHHHh---ccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhcc----
Q 020961 145 CGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (319)
Q Consensus 145 ~GlDp~k--~~if~QSd~~~~~el~w~L~---~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~---- 215 (319)
+|+||++ ++||+||+|+++.++.|+|. +.++++++.++.+||++... ++++++|+|+||+|||||++++
T Consensus 110 ~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D~l~l~~~~ 187 (408)
T PRK05912 110 KFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYDFVALNKRY 187 (408)
T ss_pred HhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhhHHHHhccC
Confidence 9999999 99999999999999999876 89999999988888765421 2578999999999999999999
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020961 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 295 (319)
++|++|||.||++|++++||+|+|+|.+ .+..+.. +.|+++ +| +|||||. +|+|
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~l~~---plL~~~-~G-~KMsKS~---~naI 241 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGGK------------------PQFGLTM---PLLTGL-DG-KKMGKSE---GNAV 241 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCCC------------------CeEEEec---CCcCCC-CC-CcccCCC---CCce
Confidence 9999999999999999999999999832 1223433 668898 77 8999997 6999
Q ss_pred ecCC---CHHHHHHhhhccccCC
Q 020961 296 NLLD---PKDVSHKFFRRFLTFL 315 (319)
Q Consensus 296 ~L~D---spe~I~kKI~~A~Td~ 315 (319)
+|+| +|++|++||+++ +|+
T Consensus 242 ~L~d~~tsp~~i~qki~~~-~D~ 263 (408)
T PRK05912 242 WLDEEKTSPYEMYQKWMNI-SDA 263 (408)
T ss_pred eCCCCCCCHHHHHHHHhcC-ChH
Confidence 9999 999999999996 554
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-44 Score=357.17 Aligned_cols=204 Identities=18% Similarity=0.237 Sum_probs=172.7
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 020961 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~---------~~~~~l~~~~~~~~~~~lA 144 (319)
+++++|+||+|||. +||||+++ +.+|++||+ |++++++|||+||+++ | .+.+++++|+.++.+++.+
T Consensus 32 ~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~~ 110 (410)
T PRK13354 32 KPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIFK 110 (410)
T ss_pred CCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHHH
Confidence 58899999999995 99999877 688999999 8999999999999997 3 2567899999988888766
Q ss_pred cCCCCCCcEEEEcccchhhhHHHHHHh---ccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhhcc----C
Q 020961 145 CGIDNSKASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY----Q 216 (319)
Q Consensus 145 ~GlDp~k~~if~QSd~~~~~el~w~L~---~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~~----~ 216 (319)
|+||++++||+||+|.++.++.|+|. ..++++ ||.+++++..+++ ++++++++|+||+|||||++++ +
T Consensus 111 -~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~---~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~~ 186 (410)
T PRK13354 111 -LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVN---RMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKED 186 (410)
T ss_pred -hcCccceEEEECccccccccHHHHHHHHHhhccHH---HHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccCC
Confidence 89999999999999998877777754 566666 4555444444443 3578999999999999999999 9
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020961 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 217 adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 296 (319)
+|++|||.||++|++++||+|+|+|.. .|..+.. +.|+++ ||+ |||||. +|+|+
T Consensus 187 ~~iq~gG~DQ~~ni~~grdl~~r~~~~------------------~~~~lt~---PlL~g~-dG~-KMsKS~---~naI~ 240 (410)
T PRK13354 187 VDLQIGGTDQWGNILMGRDLQRKLEGE------------------EQFGLTM---PLLEGA-DGT-KMGKSA---GGAIW 240 (410)
T ss_pred CCEEEecHHHHHHHHHHHHHHHHhCCC------------------CceEecc---CCccCC-CCC-ccCCCC---CCcee
Confidence 999999999999999999999999853 2444444 568898 785 999997 58999
Q ss_pred cCCC---HHHHHHhhhcc
Q 020961 297 LLDP---KDVSHKFFRRF 311 (319)
Q Consensus 297 L~Ds---pe~I~kKI~~A 311 (319)
|+|+ |+++++||+++
T Consensus 241 L~d~~tsp~~i~qki~~~ 258 (410)
T PRK13354 241 LDPEKTSPYEFYQFWMNI 258 (410)
T ss_pred ccCCCCCHHHHHHHHHcC
Confidence 9999 99999999986
No 21
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=1.6e-44 Score=354.30 Aligned_cols=210 Identities=22% Similarity=0.294 Sum_probs=177.5
Q ss_pred CceEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHHc
Q 020961 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC 145 (319)
Q Consensus 78 ~~~i~tGi~PTG-~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~l~~~~~~~~~~~lA~ 145 (319)
++++|+||+||| .+||||+++ +.+|.+||+ |++++++|||+||+++ |. +.+++++|+ +.++.++++
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~ 107 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR 107 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence 789999999999 799999997 678999999 8999999999999998 43 345566666 667889999
Q ss_pred CCCCCCcEEEEcccchh---hhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEe
Q 020961 146 GIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (319)
Q Consensus 146 GlDp~k~~if~QSd~~~---~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpv 222 (319)
|+||++++|++||+|.. +.++.|.+++.++++++.+..+|+.+. + +++++++|+||+|||+|++++++|++||
T Consensus 108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~---~-~~is~~ef~YpllQa~D~~~l~~di~~g 183 (377)
T TIGR00234 108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL---E-RGISLSEFIYPLLQAYDFVYLNVDLQIG 183 (377)
T ss_pred hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH---h-cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence 99999999999999864 567777899999999999999987543 2 3589999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC------CC--CCe
Q 020961 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP------SD--QSR 294 (319)
Q Consensus 223 G~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p------~~--~s~ 294 (319)
|.||++|++.+|++|++++... .|.+|.++++ ++ || .|||||.. .+ .++
T Consensus 184 G~DQ~~ni~~g~dLar~~~~~~--------------~~~~t~pLl~-------~~-dg-~KmgKS~~~~i~l~~~~~~~~ 240 (377)
T TIGR00234 184 GSDQWGNIRKGRDLIRRNLPSL--------------GFGLTVPLLT-------PA-DG-EKMGKSGGGAVSLDEGKYDFY 240 (377)
T ss_pred cchhHHHHHHHHHHHHHhcCCC--------------ceeeceeeec-------CC-CC-CCccCCCCCcccCCccHhhhh
Confidence 9999999999999999998542 2556766665 33 44 57777742 11 388
Q ss_pred eecCCCHHHHHHhhhccccCCC
Q 020961 295 INLLDPKDVSHKFFRRFLTFLM 316 (319)
Q Consensus 295 I~L~Dspe~I~kKI~~A~Td~~ 316 (319)
|++.|+||++.+||++++|+..
T Consensus 241 i~~~d~~D~~~~Ki~k~~t~~~ 262 (377)
T TIGR00234 241 QFWINTPDEDVKKILKLFTFLG 262 (377)
T ss_pred hhhcCCcHHHHHHHHHHcCCCc
Confidence 8889999999999999999975
No 22
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-40 Score=305.97 Aligned_cols=212 Identities=24% Similarity=0.202 Sum_probs=171.9
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHH-Hc---CCCC
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYL-AC---GIDN 149 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~--~~~~~l~~~~~~~~~~~l-A~---GlDp 149 (319)
+.+.+|||++|||+||+|.+++ +.+..+|-+ ||+|.|++|||||++++ ..++.+..++.|+-..+. ++ +++.
T Consensus 33 r~l~~YwGtaptGrpHiay~vp-m~kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l 111 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVP-MMKIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL 111 (360)
T ss_pred cCceeeecCCCCCCcceeeeee-hhHHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 5689999999999999999877 568888877 99999999999999984 356666666655444333 33 4556
Q ss_pred CCcEEEEcccch---hhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcc
Q 020961 150 SKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (319)
Q Consensus 150 ~k~~if~QSd~~---~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ 226 (319)
++..+...|++. .++-..++++..++-..+++. +. ++.++ .++..++.++||+|||+|++++++|++++|.||
T Consensus 112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~a-ga-evvkq--ve~plls~llYP~MQalDe~~L~vD~qfgGvDQ 187 (360)
T KOG2144|consen 112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKA-GA-EVVKQ--VENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ 187 (360)
T ss_pred HHHhhhcccccccCccchhhHHHHHhhccHhHHHHh-hh-hHHHh--hcchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence 677777777762 345566778877776656555 33 23332 367899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHH
Q 020961 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHK 306 (319)
Q Consensus 227 ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~k 306 (319)
|+.+.+||++...+++ ++|.++++ +|+|||++| +|||||+| .|.|+|.|+|++|.+
T Consensus 188 RKIf~~A~eylp~l~y------------------kKrihLmn---pMvPGL~q~-~KMSsSd~--~SkIdllD~~~~V~k 243 (360)
T KOG2144|consen 188 RKIFVLAEEYLPDLGY------------------KKRIHLMN---PMVPGLAQG-EKMSSSDP--LSKIDLLDEPADVNK 243 (360)
T ss_pred HHHHHHHHHhhhhhCc------------------ccceeecC---CCCcccccc-CccccCCc--ccccccccCHHHHHH
Confidence 9999999999999994 34778887 779999654 89999998 599999999999999
Q ss_pred hhhccccCCCC
Q 020961 307 FFRRFLTFLMN 317 (319)
Q Consensus 307 KI~~A~Td~~~ 317 (319)
||++|||.|.|
T Consensus 244 KI~kAfCePg~ 254 (360)
T KOG2144|consen 244 KIKKAFCEPGN 254 (360)
T ss_pred HHHHhcCCCCC
Confidence 99999999965
No 23
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-35 Score=291.65 Aligned_cols=213 Identities=22% Similarity=0.239 Sum_probs=171.1
Q ss_pred CceEEEeeCCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C-CCHHHHHHHHH----HHHH-HHHHcCCC
Q 020961 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P-YDTQQLSKATR----ETAA-IYLACGID 148 (319)
Q Consensus 78 ~~~i~tGi~PTG-~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~-~~~~~l~~~~~----~~~~-~~lA~GlD 148 (319)
++++|+||+||| .+||||+++ +.+..+||+ ||+++++|||+||+++ | +..++.+..++ ++++ ...++|.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~-l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVP-LMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CceEEEeeCCCCCccchhhHHH-HHHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 789999999999 699999998 578999999 8999999999999998 5 45555555553 2333 33456877
Q ss_pred CC-CcEEEEcccchhh---hHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecC
Q 020961 149 NS-KASVFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 224 (319)
Q Consensus 149 p~-k~~if~QSd~~~~---~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~ 224 (319)
++ +++|.++|+|... .+..-.++.++|++|+.+..+|+.+. ..+..+++.+|+||+|||+|+++++.|++.||.
T Consensus 111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~--~~~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~ 188 (401)
T COG0162 111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRL--EREQGISFTEFNYPLLQAYDFVYLNKDLQLGGS 188 (401)
T ss_pred CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHh--ccCCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence 77 9999999999653 33333467899999998888887432 223579999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCC-------CCCeeec
Q 020961 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS-------DQSRINL 297 (319)
Q Consensus 225 DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~-------~~s~I~L 297 (319)
|||.++.++||+++|+++ +.+.++++ +.|.++ ||. |||||..+ +.|.|.+
T Consensus 189 DQ~~ni~~grdl~rr~g~------------------~~~~~lt~---PLL~~l-dG~-KmgKs~~~a~~~~s~~~Sp~~~ 245 (401)
T COG0162 189 DQWGNILAGRDLIRRLGQ------------------KKVVGLTT---PLLTGL-DGK-KMGKSEGGAVWLDSEKTSPYDF 245 (401)
T ss_pred HHHHHHHHHHHHHHHhCC------------------CCeEEEEe---ccccCC-CCC-cccccCCCceEccCCCCCcHhh
Confidence 999999999999999873 24667777 559998 785 88887642 2457888
Q ss_pred CCCHHHHHHhhhccccCCC
Q 020961 298 LDPKDVSHKFFRRFLTFLM 316 (319)
Q Consensus 298 ~Dspe~I~kKI~~A~Td~~ 316 (319)
.|.++.|..|++.++|...
T Consensus 246 yq~~~~i~D~~~~~~~~~~ 264 (401)
T COG0162 246 YQYWMNIEDADVKRFLKLL 264 (401)
T ss_pred hhcHhcCcHHHHHHHHHHh
Confidence 8888888899988887654
No 24
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-36 Score=279.27 Aligned_cols=210 Identities=20% Similarity=0.287 Sum_probs=179.9
Q ss_pred CCCceEEEeeCCCC-cchhhhHHHHH-HHHHHHhccCc--EEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 020961 76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQNSYE--TLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 76 ~~~~~i~tGi~PTG-~lHLGhylg~l-~~~~~lQ~g~~--~~ilIaDlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (319)
.+|+++|||..||. .|||||.++++ .+| ||+.++ .+|.+.|.+.++. ....++..+.+++++++++|+|+||.
T Consensus 83 ~kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~ 160 (397)
T KOG2145|consen 83 GKPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPK 160 (397)
T ss_pred CCceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCc
Confidence 35899999999995 59999999988 899 899665 6999999999998 45789999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhhcc-----------CCC
Q 020961 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY-----------QSD 218 (319)
Q Consensus 151 k~~if~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~~-----------~ad 218 (319)
|+.||.+.++..-.. .+-++-++.++.++++....+| +.+.++|.+.+|..|+|..+.. -.|
T Consensus 161 kTfIFsn~~y~g~~~------fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~C 234 (397)
T KOG2145|consen 161 KTFIFSNLDYMGGPA------FYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPC 234 (397)
T ss_pred ceEEEechhhccCcH------HHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCce
Confidence 999999998753100 1123446668888888777777 6678999999999999999874 269
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 020961 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (319)
Q Consensus 219 ivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 298 (319)
++|+.+||+++++++||+|+|++ +++|..+++ .++|.|++.+.|||.|+| +++|||+
T Consensus 235 LiPcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~s---tffpaLqG~~~KMSASdp--ns~Iflt 291 (397)
T KOG2145|consen 235 LIPCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHS---TFFPALQGAQTKMSASDP--NSAIFLT 291 (397)
T ss_pred eceeeccCChHHHhhhhhhhhhC------------------CCCcceeeh---hhchhhhCcccccccCCC--CceEEec
Confidence 99999999999999999999998 567988887 679999888899999998 6999999
Q ss_pred CCHHHHHHhhhc-cccCCC
Q 020961 299 DPKDVSHKFFRR-FLTFLM 316 (319)
Q Consensus 299 Dspe~I~kKI~~-A~Td~~ 316 (319)
|++++|++||.+ |+++..
T Consensus 292 dt~~qIk~KI~~~afSGGr 310 (397)
T KOG2145|consen 292 DTAKQIKNKINKYAFSGGR 310 (397)
T ss_pred CcHHHHHHHHHHhhccCCc
Confidence 999999999976 666553
No 25
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.98 E-value=3.6e-32 Score=282.33 Aligned_cols=172 Identities=12% Similarity=0.115 Sum_probs=151.7
Q ss_pred cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh-hHHHHH----HhccCCHHHHh
Q 020961 109 SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLN 180 (319)
Q Consensus 109 g~~~~ilIaDlhA~t~~---~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~-~el~w~----L~~~~s~~rL~ 180 (319)
|++++|++|||||++++ +++++|++.++|+++.|.|+|+|++ ++|+|+||+... ...||. +++.++++|++
T Consensus 407 g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~ 485 (682)
T PTZ00348 407 DGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVE 485 (682)
T ss_pred CCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHH
Confidence 89999999999999993 7999999999999999999999999 999999997443 446886 67899999999
Q ss_pred chhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccc
Q 020961 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (319)
Q Consensus 181 R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~ 260 (319)
|+.. ++..++|.++||+||++||+++++|++.+|+|||+.++||||++++.+
T Consensus 486 r~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~------------------- 537 (682)
T PTZ00348 486 ELYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI------------------- 537 (682)
T ss_pred HHhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc-------------------
Confidence 9762 255689999999999999999999999999999999999999999632
Q ss_pred cCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCC
Q 020961 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFL 315 (319)
Q Consensus 261 ~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~ 315 (319)
.|.+++. .++|+|.+|..+|++|+| +|+|+|.|++++|++||++|||.+
T Consensus 538 -~~~~~~~---~~~p~l~~~~~~~~~~s~--~s~i~~~D~~~~i~~Ki~kA~Cpp 586 (682)
T PTZ00348 538 -ECIQALE---GRVPALHRPGAAPAVLGA--DDVLYLDDNDMDIRRKIKKAYSAP 586 (682)
T ss_pred -cchhhcC---CCCccccccccccCCCCC--CCeeeecCCHHHHHHHHHhCCCCC
Confidence 1333443 678999888889999976 699999999999999999999988
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.4e-17 Score=161.82 Aligned_cols=194 Identities=21% Similarity=0.255 Sum_probs=140.6
Q ss_pred CceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHH--
Q 020961 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL-- 143 (319)
Q Consensus 78 ~~~i~tGi~PTG~-lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~l~~~~~~~~~~~l-- 143 (319)
|.+||.||+||.. +|+||.++ +..++.+|. |++++-+|++.+|.++ |. +-+.+++|++.+...+.
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~-lm~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLA-LMVLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHH-HHHHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 5789999999987 99999987 457777887 9999999999999997 31 12344555544333333
Q ss_pred --------HcCCCCCCcEEEEcccchhhhHHHHHH---hccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhh
Q 020961 144 --------ACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASD 211 (319)
Q Consensus 144 --------A~GlDp~k~~if~QSd~~~~~el~w~L---~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAAD 211 (319)
.+|....+-.|+.+++|.+...|.=+| +.++.++.|.++-+.+ .+.+ .+..++.+|+|-+|||+|
T Consensus 142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~---~RLes~~GlSftEFtYQ~lQAYD 218 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVK---SRLESPNGLSFTEFTYQLLQAYD 218 (467)
T ss_pred HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHH---HhhcCCCCCcHHHHHHHHHHHHh
Confidence 335555678899999997654443344 3566666655555544 3333 467999999999999999
Q ss_pred hhcc----CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCC
Q 020961 212 ILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 287 (319)
Q Consensus 212 Il~~----~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS 287 (319)
.+++ +.+++.+|-||+.|++.+-|+.+|+-..- +.+|.+..++++ +- +| .|..||
T Consensus 219 fy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~------------~~vfGlT~PLlT-------ss-tG-~KlGKS 277 (467)
T KOG2623|consen 219 FYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQ------------AFVFGLTFPLLT-------SS-TG-AKLGKS 277 (467)
T ss_pred HHHHHHhcCeeEEecccccccccchHHHHHHHhcccc------------cceeeeeeeeEe-------cC-cc-hhhccC
Confidence 9984 79999999999999999999999986310 012333333333 32 56 799999
Q ss_pred CCCCCCeeecCC
Q 020961 288 APSDQSRINLLD 299 (319)
Q Consensus 288 ~p~~~s~I~L~D 299 (319)
. +|+|+|.-
T Consensus 278 a---GnAvWLdp 286 (467)
T KOG2623|consen 278 A---GNAVWLDP 286 (467)
T ss_pred C---CceEEecC
Confidence 7 78999974
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.67 E-value=3.8e-16 Score=145.29 Aligned_cols=171 Identities=19% Similarity=0.175 Sum_probs=123.6
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-------EEEEc
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFVQ 157 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~-------~if~Q 157 (319)
.|||.+||||+.+++.+|...+. +..+++.|.|. ++ .....+....+.+++.++||++|+. .+|.|
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDt----d~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~Q 82 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIEDT----DQ--ERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQ 82 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcC----CC--CCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEee
Confidence 57899999999999999998876 55666679993 32 2335566778888899999999974 38999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHH
Q 020961 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (319)
Q Consensus 158 Sd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaRdiA 237 (319)
|+..+.-+ .. +.+| ...| =|..+|++-++.|....+++.|+.|.|+..|....+.++
T Consensus 83 S~r~~~y~---~~-----~~~L----------~~~g-----dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~ 139 (239)
T cd00808 83 SERLEIYR---KY-----AEKL----------LEKG-----DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLY 139 (239)
T ss_pred eCCHHHHH---HH-----HHHH----------HHcC-----CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHH
Confidence 98533211 11 0111 1111 278999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC----CCHHHHHHhhhc
Q 020961 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVSHKFFRR 310 (319)
Q Consensus 238 ~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~----Dspe~I~kKI~~ 310 (319)
+.|| ++.|...+. +.+++. +| .||||+..+ .+|.-. -+|+.|..-+..
T Consensus 140 ~aLg------------------~~~p~~~h~---pll~~~-~g-~KLSKR~~~--~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 140 EALG------------------WEPPKFAHL---PLILNP-DG-KKLSKRKGD--TSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred HHcC------------------CCCCceEee---ccccCC-CC-CcccCCCCC--ccHHHHHHCCCCHHHHHHHHHH
Confidence 9998 334655544 446665 56 699999842 333221 357777766654
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.51 E-value=1.2e-13 Score=117.73 Aligned_cols=63 Identities=43% Similarity=0.469 Sum_probs=53.6
Q ss_pred chHHHhhhhhccCC---CEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC
Q 020961 204 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 280 (319)
Q Consensus 204 YP~LQAADIl~~~a---divpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg 280 (319)
||+.|+||++.+.. |++++|.||++|+++.++++++++. ...|..+.. .+|.+. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~-----------------~~~p~~~~~---~~l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGG-----------------PARPFGLTF---GRVMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCC-----------------CCCceEEEe---CCeECC-CC
Confidence 99999999999999 9999999999999999999999972 124777775 567775 55
Q ss_pred CCcCCCCC
Q 020961 281 LSKMSKSA 288 (319)
Q Consensus 281 ~~KMSKS~ 288 (319)
+|||||.
T Consensus 137 -~KmSks~ 143 (143)
T cd00802 137 -TKMSKSK 143 (143)
T ss_pred -CcCCCCC
Confidence 7999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.22 E-value=6.7e-11 Score=109.67 Aligned_cols=169 Identities=20% Similarity=0.206 Sum_probs=119.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhhh
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV 164 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~~ 164 (319)
.|||.|||||...++.+|..-+. +.++++-|-|.-. .....+....+.+++.++||++|+- +++||+..+.-
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~------~R~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~~~y 81 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDP------ERSRPEYVESILEDLKWLGLDWDEG-PYRQSDRFDLY 81 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCCC-eeehhcCHHHH
Confidence 57899999999999999976554 6778888888722 1234566778889999999999963 78999864321
Q ss_pred HHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHHHhhhhh
Q 020961 165 ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 244 (319)
Q Consensus 165 el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaRdiA~r~n~~y 244 (319)
+ .. + +.....| |..+|=+--+.|=...+.+.|.-|.|+..+-..-+.+++.+|
T Consensus 82 ~---~~--------~-------~~L~~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg--- 134 (230)
T cd00418 82 R---AY--------A-------EELIKKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG--- 134 (230)
T ss_pred H---HH--------H-------HHHHHcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC---
Confidence 1 10 0 1111111 556666666677777899999999999999999999999998
Q ss_pred CCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC----CCHHHHHHhhhc
Q 020961 245 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVSHKFFRR 310 (319)
Q Consensus 245 g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~----Dspe~I~kKI~~ 310 (319)
++.|...+. ++|.+. +| +||||++.+ .+|.=. -.|+.|..-+..
T Consensus 135 ---------------~~~P~~~H~---pll~~~-~g-~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~~ 182 (230)
T cd00418 135 ---------------WEPPRFYHF---PRLLLE-DG-TKLSKRKLN--TTLRALRRRGYLPEALRNYLAL 182 (230)
T ss_pred ---------------CCCCeEEEe---eeeeCC-CC-CCccCcCCC--cCHHHHHHCCCcHHHHHHHHHH
Confidence 445877775 456664 55 799999852 333222 357777766543
No 30
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.83 E-value=1.3e-08 Score=97.91 Aligned_cols=180 Identities=18% Similarity=0.182 Sum_probs=114.2
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhhh
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV 164 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~~ 164 (319)
.|||.|||||+..++.+|..-+. +.++++-|-|.-. .....+....+.+++.++||++|.- +++||+..+.-
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDtD~------~R~~~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~~~Y 85 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDP------PREVPGAADAILADLEWLGLHWDGP-VLYQSQRHDAY 85 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcCCC------CccchHHHHHHHHHHHHCCCCCCCC-ceEeeccHHHH
Confidence 56799999999999999987665 7788999998621 2344566778899999999999963 68899964321
Q ss_pred --------HHHHHHhccCCHHHHhchhc--------HHHHHHhhC-CCC---------------------------c--c
Q 020961 165 --------ELMWLLSSATPIGWLNKMIQ--------FKEKSHKAG-GEN---------------------------V--G 198 (319)
Q Consensus 165 --------el~w~L~~~~s~~rL~R~~~--------~k~~~~~~~-~~~---------------------------~--~ 198 (319)
+..+.+.|.+|-.++++..+ |.-.-+... ++. . .
T Consensus 86 ~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~ 165 (299)
T PRK05710 86 RAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLALA 165 (299)
T ss_pred HHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCCC
Confidence 11123669999998865421 100000000 000 0 0
Q ss_pred cccc------cchHHH---hhhhhccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCC
Q 020961 199 VALL------TYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPP 269 (319)
Q Consensus 199 ~g~l------~YP~LQ---AADIl~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~ 269 (319)
++-+ .||..+ +.|=...+.+.|.=|.|....-..-..|.+.|+ ++.|+..+.
T Consensus 166 ~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~P~y~H~- 226 (299)
T PRK05710 166 VGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPTPRYLHL- 226 (299)
T ss_pred CCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCCCeEEEe-
Confidence 1100 022222 222223468889999998877777777777776 456887776
Q ss_pred CCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 020961 270 AGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (319)
Q Consensus 270 ~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 299 (319)
+.|.+. +| +||||++ .+..|.+
T Consensus 227 --pll~~~-~g-~kLSKr~----~~~~i~~ 248 (299)
T PRK05710 227 --PLVLNA-DG-QKLSKQN----GAPALDA 248 (299)
T ss_pred --ecccCC-CC-CcccccC----Cccchhh
Confidence 446665 66 7999997 3445544
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.83 E-value=5.4e-08 Score=95.57 Aligned_cols=193 Identities=22% Similarity=0.242 Sum_probs=107.9
Q ss_pred CceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE-EEEEeccceec---------------C-C---------CC
Q 020961 78 KKRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET-LFFIVDLHAIT---------------L-P---------YD 127 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~-~ilIaDlhA~t---------------~-~---------~~ 127 (319)
+..|-||+-|||.+||||+...+ .-+.+.++ |+++ +++..|.|.-+ + | ..
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 56788899999999999987644 22444433 7887 55889999321 1 1 02
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhhhHHH---H-HHhccCCHHHHhchhcHHHHHHh----------hC
Q 020961 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELM---W-LLSSATPIGWLNKMIQFKEKSHK----------AG 193 (319)
Q Consensus 128 ~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~~el~---w-~L~~~~s~~rL~R~~~~k~~~~~----------~~ 193 (319)
++-..++...+.+.+..+||+.+ +|.+++.+.+.++. . .|...--+.++-.-..=++.... -|
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg 176 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCG 176 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcC
Confidence 23355566677778888999775 78888865442211 1 11111111110000000000000 00
Q ss_pred CC-------CcccccccchH---------------------HHhhhhhccCCCEEEecCcchHH---HHHHHHHHH-Hhh
Q 020961 194 GE-------NVGVALLTYPV---------------------LMASDILLYQSDFVPVGEDQKQH---LELTRELAE-RVN 241 (319)
Q Consensus 194 ~~-------~~~~g~l~YP~---------------------LQAADIl~~~adivpvG~DQ~~h---ieLaRdiA~-r~n 241 (319)
.. +..-+.+.|=+ ==++.-..++.|+.|+|.||..| +...+++++ .|+
T Consensus 177 ~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg 256 (353)
T cd00674 177 KDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVDFEPFGKDHASAGGSYDTGKEIAREIFG 256 (353)
T ss_pred cceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCCEEeeCccccccccHHHHHHHHHHHHhC
Confidence 00 00012223311 11122233479999999999999 999999999 777
Q ss_pred hhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 020961 242 YLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (319)
Q Consensus 242 ~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 299 (319)
. +.|..+.. .++ .+ ++..|||||. +|.|.+.|
T Consensus 257 ~------------------~~P~~~~y---e~V-~l-~gg~KMSKSk---GnvI~~~d 288 (353)
T cd00674 257 G------------------EPPVPVMY---EFI-GL-KGGGKMSSSK---GNVITPSD 288 (353)
T ss_pred C------------------CCCeEEEe---eeE-Ee-CCCCccCCCC---CCcCCHHH
Confidence 3 23555443 223 34 3437999997 68887765
No 32
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.77 E-value=5e-08 Score=99.25 Aligned_cols=179 Identities=20% Similarity=0.206 Sum_probs=117.2
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCc------EEEEc
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKA------SVFVQ 157 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~------~if~Q 157 (319)
.|||.+||||...++.+|.--.. +.++++-|-|. |. ....+....+.+++.++||++|.. -.|.|
T Consensus 12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~Q 84 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIEDT-------DQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQ 84 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCceeh
Confidence 46799999999999999975544 67788888887 33 234456677888899999999964 14999
Q ss_pred ccchh-hhHHHH-------HHhccCCHHHHhchhc----------H---------HHHHHhh--CC---------C----
Q 020961 158 SHVRA-HVELMW-------LLSSATPIGWLNKMIQ----------F---------KEKSHKA--GG---------E---- 195 (319)
Q Consensus 158 Sd~~~-~~el~w-------~L~~~~s~~rL~R~~~----------~---------k~~~~~~--~~---------~---- 195 (319)
|+..+ +.+..- .+.|.+|-.+|...-. | .+..+.. |. +
T Consensus 85 S~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~ 164 (476)
T PRK01406 85 SERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEV 164 (476)
T ss_pred hcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCce
Confidence 99643 222111 1558999888764311 0 0000000 00 0
Q ss_pred -------------Cccccccc------chHHHhhhhhc---cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccC
Q 020961 196 -------------NVGVALLT------YPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 253 (319)
Q Consensus 196 -------------~~~~g~l~------YP~LQAADIl~---~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~ 253 (319)
+..++-++ ||..+.||++- .+.|.|..|.||..|.-.-..+.+.|+
T Consensus 165 ~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG------------ 232 (476)
T PRK01406 165 VFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG------------ 232 (476)
T ss_pred EEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC------------
Confidence 00011111 66777777743 478999999999999999999999988
Q ss_pred CCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 020961 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (319)
Q Consensus 254 ~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 298 (319)
+..|...+. +.+.++ +| +||||.+ ..+.|.
T Consensus 233 ------~~~p~~~H~---pli~~~-~g-~klSKR~----g~~~l~ 262 (476)
T PRK01406 233 ------WEVPVFAHL---PLILGP-DG-KKLSKRH----GATSVE 262 (476)
T ss_pred ------CCCCeEEEe---eeeeCC-CC-CcccCcC----CccCHH
Confidence 234766665 346666 56 7999997 355554
No 33
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.77 E-value=6.7e-08 Score=99.08 Aligned_cols=59 Identities=27% Similarity=0.473 Sum_probs=45.3
Q ss_pred cCCCEEEecCcchH-HHHHHHHHHH-HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (319)
Q Consensus 215 ~~adivpvG~DQ~~-hieLaRdiA~-r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 292 (319)
+++|+.|.|.||.. +..+++++++ .++. +.|..+.. .++..- +| +|||||. +
T Consensus 233 l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~------------------~~P~~~~y---~~v~~~-~G-~KMSKSk---G 286 (510)
T PRK00750 233 LGVDFEPFGKDHASASYDTSKKIAREILGG------------------EPPEPFVY---ELFLDK-KG-EKISKSK---G 286 (510)
T ss_pred cCCCEEeeCcccCcchHHHHHHHHHHHcCC------------------CCCeeeee---eeEEeC-CC-CcccccC---C
Confidence 47999999999999 9999999999 7662 24666554 334432 35 7999997 7
Q ss_pred CeeecCC
Q 020961 293 SRINLLD 299 (319)
Q Consensus 293 s~I~L~D 299 (319)
|.|.+.|
T Consensus 287 N~i~~~d 293 (510)
T PRK00750 287 NVITIED 293 (510)
T ss_pred CccCHHH
Confidence 8888766
No 34
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.71 E-value=9.8e-08 Score=97.66 Aligned_cols=179 Identities=17% Similarity=0.171 Sum_probs=114.6
Q ss_pred eEEEeeCCC--CcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHH-HHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020961 80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi~PT--G~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~-~l~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.+.+.|.|| |.+||||...++.+|..-+. |.++++-|-|. |.+ ...+..+.+.+++.++|||+|. ..|
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~~~~~~i~~~L~WLGl~wDe-~py 75 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDT-------DKERSTKEAVEAIFSGLKWLGLDWNG-EVI 75 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC-Cce
Confidence 356777666 99999999999999986554 77888888887 332 2345566788889999999985 379
Q ss_pred Ecccchh-hhHHHH-------HHhccCCHHHHhchhc----------HHHHHHhh-------C-----------CCCc--
Q 020961 156 VQSHVRA-HVELMW-------LLSSATPIGWLNKMIQ----------FKEKSHKA-------G-----------GENV-- 197 (319)
Q Consensus 156 ~QSd~~~-~~el~w-------~L~~~~s~~rL~R~~~----------~k~~~~~~-------~-----------~~~~-- 197 (319)
+||+..+ |.+.+- .+-|+++-.+|+..-. |....+.. + .+.+
T Consensus 76 ~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~ 155 (513)
T PRK14895 76 FQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITI 155 (513)
T ss_pred eEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEE
Confidence 9999643 222111 1459999888764421 10000000 0 0000
Q ss_pred ---ccccccc----------------hHHHhhhh---hccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCC
Q 020961 198 ---GVALLTY----------------PVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (319)
Q Consensus 198 ---~~g~l~Y----------------P~LQAADI---l~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~ 255 (319)
--|.+.+ |..+-+.+ ...+.+.|..|.||..|.-.-..+.+.++
T Consensus 156 ~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG-------------- 221 (513)
T PRK14895 156 HDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG-------------- 221 (513)
T ss_pred EeecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC--------------
Confidence 0122222 12222211 22378999999999999999999999887
Q ss_pred CCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020961 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 256 ~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 289 (319)
+..|...+. +.|.+. +| +||||.+.
T Consensus 222 ----~~~p~~~H~---plv~~~-~g-~KLSKR~g 246 (513)
T PRK14895 222 ----YAVPSMTHI---PLIHGA-DG-AKLSKRHG 246 (513)
T ss_pred ----CCCCeEEEE---EeEEcC-CC-CccccccC
Confidence 234777775 457776 66 79999974
No 35
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.69 E-value=1.6e-07 Score=95.44 Aligned_cols=189 Identities=19% Similarity=0.201 Sum_probs=117.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh-
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~- 162 (319)
.|||.|||||...++.+|..-.. +.++++-|-|. |+ ....+....+.+++.++||++|. ..|.||+..+
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~ 80 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDT-------DLERNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDI 80 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCccCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHH
Confidence 47899999999999999975544 67788888887 33 23345667788899999999995 4799999643
Q ss_pred hhHHHHH-------HhccCCHHHHhchhc-------------------HHHHHHhh--CC---------C-C-c-----c
Q 020961 163 HVELMWL-------LSSATPIGWLNKMIQ-------------------FKEKSHKA--GG---------E-N-V-----G 198 (319)
Q Consensus 163 ~~el~w~-------L~~~~s~~rL~R~~~-------------------~k~~~~~~--~~---------~-~-~-----~ 198 (319)
|.+..-. +.|.+|-.+++.+-. -.+..+.. +. . . + -
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~ 160 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQV 160 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEecc
Confidence 2221111 458899888763311 10000000 00 0 0 0 0
Q ss_pred ccccc----------------chHHH---hhhhhccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCcc
Q 020961 199 VALLT----------------YPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 259 (319)
Q Consensus 199 ~g~l~----------------YP~LQ---AADIl~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~ 259 (319)
-|.+. +|... +.|=...+.|.|..|.||..|...-..+.+.++
T Consensus 161 ~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg------------------ 222 (470)
T TIGR00464 161 RGEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALG------------------ 222 (470)
T ss_pred cceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcC------------------
Confidence 01121 12221 111122379999999999999999999999987
Q ss_pred ccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhh
Q 020961 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFR 309 (319)
Q Consensus 260 ~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~ 309 (319)
+..|...+. +.+..+ +| +||||.+ +.+.|.| .|+.+.+-+.
T Consensus 223 ~~~p~~~H~---p~l~~~-~g-~kLSKR~----g~~~l~~l~~~g~~p~a~~~~~~ 269 (470)
T TIGR00464 223 WKIPVFAHL---PMILDE-DG-KKLSKRD----GATSIMQFKEQGYLPEALINYLA 269 (470)
T ss_pred CCCCeEEEE---eeeecC-CC-ccccccC----CCccHHHHHHCCCCHHHHHHHHH
Confidence 234666665 335565 56 7999997 3555542 4555555443
No 36
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.9e-07 Score=93.50 Aligned_cols=178 Identities=20% Similarity=0.206 Sum_probs=113.9
Q ss_pred EEEeeC--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020961 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 81 i~tGi~--PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
|.+=|. |||.+||||...++.+|..-+. +.++++-|-|. |+ ....+....+.+++..+||++|.. +|+
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDT-------D~~R~~~e~~~~I~~~L~WLGl~wde~-~~~ 81 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDT-------DPERETPEAEDAILEDLEWLGLDWDEG-PYY 81 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCCCCHHHHHHHHHHHHhcCCCCCCc-eee
Confidence 555564 5699999999999999976655 77889999887 33 234456667788899999999975 799
Q ss_pred cccchhh-hHH-HHH------HhccCCHHHHhchhc-----------HH---------HHHHhhCC--------------
Q 020961 157 QSHVRAH-VEL-MWL------LSSATPIGWLNKMIQ-----------FK---------EKSHKAGG-------------- 194 (319)
Q Consensus 157 QSd~~~~-~el-~w~------L~~~~s~~rL~R~~~-----------~k---------~~~~~~~~-------------- 194 (319)
||+..+. .+. .++ +-|+++-.+|+.+-. +. ++....+.
T Consensus 82 QS~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~ 161 (472)
T COG0008 82 QSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAH 161 (472)
T ss_pred hhhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCC
Confidence 9996432 221 122 348999866655411 10 00111000
Q ss_pred C-----Ccccccccch------HHHhhhhhc------------cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccc
Q 020961 195 E-----NVGVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251 (319)
Q Consensus 195 ~-----~~~~g~l~YP------~LQAADIl~------------~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~ 251 (319)
. +.-.|.+..+ ++.-+|++. .+.+.|.-|+|+..+=..-+-|.+-|+
T Consensus 162 ~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg---------- 231 (472)
T COG0008 162 PGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG---------- 231 (472)
T ss_pred CCCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC----------
Confidence 0 0112333332 333333332 268899999999888877777777776
Q ss_pred cCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020961 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 252 ~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 289 (319)
++.|...+. ++|.+ -+| +||||++.
T Consensus 232 --------~~~P~~~H~---~li~~-~~g-~kLSKr~~ 256 (472)
T COG0008 232 --------WPPPVYAHL---PLLLN-EDG-KKLSKRKG 256 (472)
T ss_pred --------CCCCcEEEe---eeeec-CCC-CeecCccC
Confidence 455887776 45666 345 79999973
No 37
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.55 E-value=1e-06 Score=83.83 Aligned_cols=192 Identities=16% Similarity=0.160 Sum_probs=117.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh-
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~- 163 (319)
.|||.|||||...++.+|..-+. +..+++-|-|.-. .....+....+.+++..+||++|+. .++||+..+.
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD~------~R~~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~~~Y 80 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDP------PREVPGAADDILRTLEAYGLHWDGE-VVYQSQRHALY 80 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCCC-eeeeeCCHHHH
Confidence 47899999999999999976554 6778888888722 1233456677888899999999964 5899996442
Q ss_pred hHHHH-------HHhccCCHHHHhchh-----cHHHHHHh----hCCC-----------Ccc-----ccccc--------
Q 020961 164 VELMW-------LLSSATPIGWLNKMI-----QFKEKSHK----AGGE-----------NVG-----VALLT-------- 203 (319)
Q Consensus 164 ~el~w-------~L~~~~s~~rL~R~~-----~~k~~~~~----~~~~-----------~~~-----~g~l~-------- 203 (319)
.+..- .+.|.+|-.++++.. .|...-+. ...+ .+. .|.+.
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~ 160 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVG 160 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCC
Confidence 22111 145999988886541 11100000 0000 000 12211
Q ss_pred ---------chHHHhhhh---hccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCC
Q 020961 204 ---------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 271 (319)
Q Consensus 204 ---------YP~LQAADI---l~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~ 271 (319)
||..+=|-. ...+.+.|.=|+|...+--.-.-|.+.|+ ++.|...+.
T Consensus 161 D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~y~H~--- 219 (272)
T TIGR03838 161 DFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPRYLHL--- 219 (272)
T ss_pred CEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCeEEec---
Confidence 232222211 22368899999998887777777777776 445877765
Q ss_pred cccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhh
Q 020961 272 ARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFR 309 (319)
Q Consensus 272 ~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 309 (319)
+.|.+. +| +|+||++.. ..|.=.|+++.+..=+.
T Consensus 220 pll~~~-~g-~kLSKR~~~--~~i~~~~~~~~~~~~l~ 253 (272)
T TIGR03838 220 PLVVNA-DG-EKLSKQNGA--PALDLSHPLPALLAALR 253 (272)
T ss_pred hhhhCC-CC-CeeeccCCc--cchhcCCcHHHHHHHHH
Confidence 457675 66 799999742 34433355555544443
No 38
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.44 E-value=1.1e-06 Score=82.17 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=99.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~-~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~ 163 (319)
.|||.|||||...++.+|..-.. +.+.++-|-|. |++ ...+....+.+++.++||++| .+++||+..+.
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~ 79 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDT-------NPEKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQ 79 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCcccchHHHHHHHHHHHHcCCCCC--CceecccCHHH
Confidence 57899999999999999976544 67788888887 443 344566788899999999999 57899996432
Q ss_pred -hHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHh---hhhhccCCCEEEecCcchHHHHHHHHHHHH
Q 020961 164 -VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMA---SDILLYQSDFVPVGEDQKQHLELTRELAER 239 (319)
Q Consensus 164 -~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQA---ADIl~~~adivpvG~DQ~~hieLaRdiA~r 239 (319)
.+..-.|- ++-..|.. .+.+ . ...+||..+= .|=...+.+.|.-|.|....-..-.-+.+.
T Consensus 80 Y~~~~~~L~--------~~g~aY~~--~~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~a 144 (238)
T cd00807 80 LYEYAEQLI--------KKGKAYVH--HRTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDA 144 (238)
T ss_pred HHHHHHHHH--------HcCCeecC--CCCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHH
Confidence 22111111 00001110 0001 1 1223555543 344456899999999998887777777777
Q ss_pred hhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020961 240 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 240 ~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 289 (319)
|+ ++.|..+.- ..+ +. +| .|+||++.
T Consensus 145 Lg------------------~~~P~~~~~---~hl-n~-~g-~kLSKR~~ 170 (238)
T cd00807 145 LR------------------LYRPHQWEF---SRL-NL-TY-TVMSKRKL 170 (238)
T ss_pred cC------------------CCCCceeEE---EEE-CC-CC-CCccCcCc
Confidence 76 334643221 223 43 56 79999973
No 39
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.43 E-value=1.1e-06 Score=82.05 Aligned_cols=158 Identities=22% Similarity=0.195 Sum_probs=102.0
Q ss_pred EeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHH---HHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 020961 83 SGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQ---LSKATRETAAIYLACGIDNSKASVFVQS 158 (319)
Q Consensus 83 tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~---l~~~~~~~~~~~lA~GlDp~k~~if~QS 158 (319)
.|-.|||.+||||...++.+|+.-+. +..+++-|-|. |.+. ..+...++.+++.++|++|| +++.||
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDt-------D~~r~~~~~~~~~~i~~dL~wLGl~~d--~~~~qS 76 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDT-------DPRTKRPDPEAYDMIPEDLEWLGVKWD--EVVIAS 76 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcC-------CCCcccchHHHHHHHHHHHHHcCCCCC--Cccchh
Confidence 45578899999999999988875544 55677788887 3322 44455678899999999999 579999
Q ss_pred cchh-hhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhh---hhhccCCCEEEecCcchHHHHHHH
Q 020961 159 HVRA-HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTR 234 (319)
Q Consensus 159 d~~~-~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAA---DIl~~~adivpvG~DQ~~hieLaR 234 (319)
+..+ +.+..=.|- ++-..|. ....+ +. ..+||..+=| |=...+.+.|.-|+|...+-..-.
T Consensus 77 ~r~~~y~~~~~~Li--------~~G~aY~--~~~~~-~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~ 141 (240)
T cd09287 77 DRIELYYEYARKLI--------EMGGAYV--HPRTG-SK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQR 141 (240)
T ss_pred ccHHHHHHHHHHHH--------HcCCccc--CcccC-Cc----EEEEEccccceeeeccccCCCeEEechhhhhCCHHHH
Confidence 9643 222211111 1111111 01111 11 1335555433 334568999999999998888878
Q ss_pred HHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCC
Q 020961 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (319)
Q Consensus 235 diA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 288 (319)
-+.+.|+ ++.|...+. +.+.. +| +||||.+
T Consensus 142 ~l~~~Lg------------------~~~P~~~H~---pll~~--~~-~kLSKR~ 171 (240)
T cd09287 142 YIYEYFG------------------WEYPETIHW---GRLKI--EG-GKLSTSK 171 (240)
T ss_pred HHHHHcC------------------CCCCcEEee---eeecC--CC-Ceecccc
Confidence 8888876 345777765 34532 45 8999997
No 40
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.42 E-value=1.6e-06 Score=89.08 Aligned_cols=176 Identities=15% Similarity=0.110 Sum_probs=110.3
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020961 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi--~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.+.+=| .|||.|||||...++.+|..-+. +..+++-|-|. |+ ....+....+.+++.++|++++. ++
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDT-------Dp~R~~~e~~~~I~~dL~WLGl~wD~--~~ 81 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDT-------NPSKEKAEFEESIIEDLGKIEIKPDS--VS 81 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CCCccchHHHHHHHHHHHHhCCCCCC--Cc
Confidence 355555 56799999999999999975544 66778788776 33 34556777888999999999994 78
Q ss_pred Ecccchhh-hHHHHH-------HhccCCHHHHhch-----------hc-------HHHHHHh-hCC-------------C
Q 020961 156 VQSHVRAH-VELMWL-------LSSATPIGWLNKM-----------IQ-------FKEKSHK-AGG-------------E 195 (319)
Q Consensus 156 ~QSd~~~~-~el~w~-------L~~~~s~~rL~R~-----------~~-------~k~~~~~-~~~-------------~ 195 (319)
+||+..+. .+.+-. +.|.++-.+++.. .+ |.++.+- +.+ .
T Consensus 82 ~qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~ 161 (523)
T PLN03233 82 FTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSD 161 (523)
T ss_pred cccccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCC
Confidence 99997542 222221 4588988877422 11 1111100 000 0
Q ss_pred Ccccccc------------------cchHHHhhhhh---ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCC
Q 020961 196 NVGVALL------------------TYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (319)
Q Consensus 196 ~~~~g~l------------------~YP~LQAADIl---~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~ 254 (319)
+.+++-+ .||..+=|-.+ ..+.++|.-|.|...+-..-.-|.+.|+
T Consensus 162 n~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg------------- 228 (523)
T PLN03233 162 NGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALG------------- 228 (523)
T ss_pred CCCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhC-------------
Confidence 0111100 24554433332 2378999999999998888888888876
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCcCCCCC
Q 020961 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (319)
Q Consensus 255 ~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 288 (319)
++.|.. +.+ . ..++ +| .||||++
T Consensus 229 -----~~~P~~-~~f--~-rln~-~~-~kLSKR~ 251 (523)
T PLN03233 229 -----LRRPRI-HAF--A-RMNF-MN-TVLSKRK 251 (523)
T ss_pred -----CCCCee-eee--E-EECC-CC-CcccccC
Confidence 334664 222 2 3455 45 6999996
No 41
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.42 E-value=1.2e-06 Score=88.22 Aligned_cols=88 Identities=26% Similarity=0.314 Sum_probs=64.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh-
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~-~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~- 162 (319)
.|||.+||||...++.+|..-+. |.++++-|-|. |.+ ...+....+.+++.++||++|. .|+||+..+
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDT-------D~~R~~~e~~~~I~~~L~WlGl~wDe--~y~QSeR~~~ 77 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDT-------DKERNIEGKDKEILEILNLFGISWDK--LVYQSENLKF 77 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCcCChHHHHHHHHHHHHcCCCCCC--CeehhccHHH
Confidence 48899999999999999986655 77888888887 332 3345667788889999999994 699999643
Q ss_pred hhHHHH-------HHhccCCHHHHhch
Q 020961 163 HVELMW-------LLSSATPIGWLNKM 182 (319)
Q Consensus 163 ~~el~w-------~L~~~~s~~rL~R~ 182 (319)
+.+..= .+-|+++-.+++.+
T Consensus 78 Y~~~a~~Li~~G~AY~C~cs~eel~~~ 104 (433)
T PRK12410 78 HRQMAEKLLSEKKAFACFCSEEELEAK 104 (433)
T ss_pred HHHHHHHHHHcCCeeeecCCHHHHHHH
Confidence 222111 15589998887644
No 42
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.38 E-value=2.1e-06 Score=89.23 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=111.9
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020961 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi--~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.+.+=| +|||.|||||...++.+|..-+. +..+++-|-|. |+ ....+....+.+++.++||++|. .++
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDT-------Dp~R~~~e~~d~IleDL~WLGl~wDe-~~~ 123 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDT-------NPSKEKEHFEQAILDDLATLGVSWDV-GPT 123 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC-------CCcccCHHHHHHHHHHHHHCCCCCCC-cee
Confidence 455666 56799999999999999976555 66788888887 43 34556778889999999999985 368
Q ss_pred Ecccchhh-hHHHHH-------HhccCCHHHHhchh------cHHHH-----H---Hhh--CC--C--------------
Q 020961 156 VQSHVRAH-VELMWL-------LSSATPIGWLNKMI------QFKEK-----S---HKA--GG--E-------------- 195 (319)
Q Consensus 156 ~QSd~~~~-~el~w~-------L~~~~s~~rL~R~~------~~k~~-----~---~~~--~~--~-------------- 195 (319)
+||+..+. .+.+-. +.|.++-.+++... .+.+. . +.+ +. +
T Consensus 124 ~QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~ 203 (601)
T PTZ00402 124 YSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNE 203 (601)
T ss_pred eccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCC
Confidence 89997542 222211 45788877664321 11110 0 000 00 0
Q ss_pred Ccccc-c-----------------ccchHHHhhhhh---ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCC
Q 020961 196 NVGVA-L-----------------LTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (319)
Q Consensus 196 ~~~~g-~-----------------l~YP~LQAADIl---~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~ 254 (319)
+.+++ . -.||..+=|-.+ ..+.++|.-|.|...+-..-.-|.+.|+
T Consensus 204 n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg------------- 270 (601)
T PTZ00402 204 NKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG------------- 270 (601)
T ss_pred CCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC-------------
Confidence 00000 0 134444333222 2378999999999998888888888876
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020961 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 255 ~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 289 (319)
++.|...+. ++ .++ +| .||||++-
T Consensus 271 -----~~~P~~~h~---~r-Ln~-~g-~kLSKRkl 294 (601)
T PTZ00402 271 -----IRKPIVEDF---SR-LNM-EY-SVMSKRKL 294 (601)
T ss_pred -----CCCceEEEE---ee-EcC-CC-CcccccCC
Confidence 345766664 43 355 56 69999974
No 43
>PLN02627 glutamyl-tRNA synthetase
Probab=98.36 E-value=8e-06 Score=84.07 Aligned_cols=92 Identities=18% Similarity=0.176 Sum_probs=65.7
Q ss_pred eeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcE-------E
Q 020961 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS-------V 154 (319)
Q Consensus 84 Gi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~-------i 154 (319)
-=.|||.+||||...++.+|..-+. +.++++-|-|. |. ....+....+.+++.++||++|... .
T Consensus 51 APSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gp 123 (535)
T PLN02627 51 APSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT-------DLARSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGP 123 (535)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHcCCCCCcCcccCCCCCC
Confidence 3356799999999999999986655 77888888887 32 2344566778888999999999642 5
Q ss_pred EEcccchhh-hHHHH-------HHhccCCHHHHhch
Q 020961 155 FVQSHVRAH-VELMW-------LLSSATPIGWLNKM 182 (319)
Q Consensus 155 f~QSd~~~~-~el~w-------~L~~~~s~~rL~R~ 182 (319)
|+||+..+. .+.+- .+.|+++-.+++.+
T Consensus 124 y~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~ 159 (535)
T PLN02627 124 YRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAM 159 (535)
T ss_pred eeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHH
Confidence 999996432 22111 25589998877543
No 44
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.36 E-value=4.5e-06 Score=80.81 Aligned_cols=192 Identities=20% Similarity=0.144 Sum_probs=111.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~ 163 (319)
.|||.|||||...++.+|..-.. +..+++-|-|. |+ ....+....+..++..+||++| -.++.||+..+.
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~ 80 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIEDT-------DPERCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEI 80 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETS-------STTTCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHH
T ss_pred CCCCCcccchhHHHHHHHHHHhccCceEEEecccc-------ccccchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHH
Confidence 57899999999999999976554 66788888887 33 2344566778888999999998 457889996543
Q ss_pred h-HHH-------HHHhccCCHHHHhchhcH------------HH---------HHH-hh-C---------C-C-C-----
Q 020961 164 V-ELM-------WLLSSATPIGWLNKMIQF------------KE---------KSH-KA-G---------G-E-N----- 196 (319)
Q Consensus 164 ~-el~-------w~L~~~~s~~rL~R~~~~------------k~---------~~~-~~-~---------~-~-~----- 196 (319)
- +.. ..+.|.++-.+++....- .. +.+ .. + + + .
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D 160 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRD 160 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeeccccccccccc
Confidence 2 111 114588888776644321 00 000 00 0 0 0 0
Q ss_pred cccccc-------cchHHHhhhh------------hccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCC
Q 020961 197 VGVALL-------TYPVLMASDI------------LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257 (319)
Q Consensus 197 ~~~g~l-------~YP~LQAADI------------l~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~ 257 (319)
.-.|.+ -.++++=+|. ...+.++|.=|.|....-..-.-|.+.|+
T Consensus 161 ~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg---------------- 224 (314)
T PF00749_consen 161 LVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALG---------------- 224 (314)
T ss_dssp TTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCT----------------
T ss_pred CcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhC----------------
Confidence 001111 1222222222 23479999999999988888888888887
Q ss_pred ccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee------ecCCCHHHHHHhhhc
Q 020961 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI------NLLDPKDVSHKFFRR 310 (319)
Q Consensus 258 ~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I------~L~Dspe~I~kKI~~ 310 (319)
++.|...+. +.+.+. +| +|+||++.. ..| .-.++|+.+-+=+++
T Consensus 225 --~~~P~~~H~---pl~l~~-~g-~kLSKR~~~--~~i~~~~~r~~g~~~~~~l~~L~~ 274 (314)
T PF00749_consen 225 --WPPPPYAHL---PLILNE-DG-KKLSKRKGA--KSIELGDYREWGDPPEATLNYLAR 274 (314)
T ss_dssp --SSS-EEEEE---EEEEET-TS-SBSSTTCSH--HBHHHHHHHHTT-THHHHHHHHHH
T ss_pred --CCCcceEee---eeeecC-CC-cEechhhcc--ccccccccccCCCCHHHHHHHHHH
Confidence 334666665 335554 56 799999852 332 234677776654443
No 45
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.31 E-value=1.2e-06 Score=88.55 Aligned_cols=87 Identities=24% Similarity=0.234 Sum_probs=63.6
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHH-HHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~-~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~ 163 (319)
.|||.+||||...++.+|..-.. +.++++-|-|. |.+ ...+....+.+++.++|+++|. .|.||+..+.
T Consensus 10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~Rs~~~~~~~I~e~L~wLGI~~De--~y~QSer~~~ 80 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDDT-------DLERSKQEYADAIAEDLKWLGINWDR--TFRQSDRFDR 80 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccC-------CcccchHHHHHHHHHHHHHcCCCCCc--cccHHHHHHH
Confidence 47899999999999999976554 67888888887 332 3445666788889999999994 7999996432
Q ss_pred -hHHH-------HHHhccCCHHHHhc
Q 020961 164 -VELM-------WLLSSATPIGWLNK 181 (319)
Q Consensus 164 -~el~-------w~L~~~~s~~rL~R 181 (319)
.+.. ..+-|.+|-.+|+.
T Consensus 81 y~~~~e~L~e~G~AY~C~Ct~eel~~ 106 (445)
T PRK12558 81 YDEAAEKLKAAGRLYPCYETPEELEL 106 (445)
T ss_pred HHHHHHHHHHCCCEEEecCchHHHHH
Confidence 1111 11458999888754
No 46
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.27 E-value=8.1e-06 Score=84.69 Aligned_cols=180 Identities=17% Similarity=0.126 Sum_probs=112.3
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 020961 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~Q 157 (319)
.+...+=.|||.+||||...++.+|..-+. +..+++-|-|.-.-+ .....+....+.+++.++|++++ .++.|
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~----~R~~~e~~~~I~edL~wLGl~wD--~~~~q 175 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRT----KRPDPEAYDMILEDLKWLGVKWD--EVVIQ 175 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCc----ccchHHHHHHHHHHHHHcCCCCC--CccCc
Confidence 455666677899999999999988875444 567788888872211 12234455678889999999998 47899
Q ss_pred ccchhh-hHHHH-------HHhccCCHHHHhchh-----------cH-------HHHHH----------hhC-C---CCc
Q 020961 158 SHVRAH-VELMW-------LLSSATPIGWLNKMI-----------QF-------KEKSH----------KAG-G---ENV 197 (319)
Q Consensus 158 Sd~~~~-~el~w-------~L~~~~s~~rL~R~~-----------~~-------k~~~~----------~~~-~---~~~ 197 (319)
|+..+. .+.+= .+.|.++-.++++.. +. .++.. +.. + .+.
T Consensus 176 Sdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~ 255 (567)
T PRK04156 176 SDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNP 255 (567)
T ss_pred ccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCC
Confidence 996432 22111 145777776663321 00 00000 000 0 000
Q ss_pred c------------------cccccchHHHhh---hhhccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCC
Q 020961 198 G------------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256 (319)
Q Consensus 198 ~------------------~g~l~YP~LQAA---DIl~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~ 256 (319)
+ -+...||.++=| |-...+.++|.-|.|...+-..-..+.+.|+
T Consensus 256 ~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg--------------- 320 (567)
T PRK04156 256 SVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG--------------- 320 (567)
T ss_pred CccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC---------------
Confidence 0 011236665433 3344589999999999999888888888876
Q ss_pred CccccCCccccCCCCcccccCCCCCCcCCCCC
Q 020961 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (319)
Q Consensus 257 ~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 288 (319)
+..|...+. ++|. + +| .|||||.
T Consensus 321 ---~~~P~~~H~---~~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 321 ---WEYPETIHY---GRLK-I-EG-FVLSTSK 343 (567)
T ss_pred ---CCCceEEEc---ceec-C-CC-ceeeccc
Confidence 334777775 4453 4 56 6999997
No 47
>PLN02907 glutamate-tRNA ligase
Probab=98.20 E-value=8.1e-06 Score=87.01 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=96.1
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020961 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi--~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.+.+=| +|||.+||||...++.+|..-+. +..+++-|-|. |+ ....+....+.+++..+|+++|+ ++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDT-------dp~r~~~e~~~~I~~dl~wLG~~~d~--~~ 283 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDT-------NPSKESDEFVENILKDIETLGIKYDA--VT 283 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCcCChHHHHHHHHHHHHcCCCCCC--cc
Confidence 466666 56699999999999999875444 66778888776 33 23445667788899999999995 68
Q ss_pred Ecccchhh-hHHHHH-------HhccCCHHHHhchh-----------c-------HHHHHHh-h-C------------CC
Q 020961 156 VQSHVRAH-VELMWL-------LSSATPIGWLNKMI-----------Q-------FKEKSHK-A-G------------GE 195 (319)
Q Consensus 156 ~QSd~~~~-~el~w~-------L~~~~s~~rL~R~~-----------~-------~k~~~~~-~-~------------~~ 195 (319)
+||+..+. .+.+-. +.|.++..+++... + |.+|... + + ..
T Consensus 284 ~qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~ 363 (722)
T PLN02907 284 YTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDP 363 (722)
T ss_pred cccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCC
Confidence 99997542 222111 34778777664221 1 1111100 0 0 00
Q ss_pred Cccccc-----c-------------cchHHHhhhhhc---cCCCEEEecCcchHHHHHHHHHHHHhh
Q 020961 196 NVGVAL-----L-------------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVN 241 (319)
Q Consensus 196 ~~~~g~-----l-------------~YP~LQAADIl~---~~adivpvG~DQ~~hieLaRdiA~r~n 241 (319)
+.++.- . .||..+=|-.+- .+.++|.-|.|...+-..-.-+.+.|+
T Consensus 364 n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg 430 (722)
T PLN02907 364 NKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMG 430 (722)
T ss_pred CCCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcC
Confidence 111111 1 155555443322 478999999999998888888888876
No 48
>PLN02859 glutamine-tRNA ligase
Probab=98.11 E-value=1.6e-05 Score=84.79 Aligned_cols=177 Identities=12% Similarity=0.095 Sum_probs=110.4
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHH-HHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020961 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi--~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~-~l~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.|.+=| +|||.|||||...++.+|..-+. +..+++-|-|. |++ ...+....+.+++.++|++|++ ++
T Consensus 264 ~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDT-------dp~r~~~e~~~~I~edL~WLG~~~d~--~~ 334 (788)
T PLN02859 264 KVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDT-------NPEAEKKEYIDHIEEIVEWMGWEPFK--IT 334 (788)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCccchHHHHHHHHHHHHcCCCCCC--cc
Confidence 355555 57799999999999999875554 66777787776 432 3456677888899999999985 68
Q ss_pred Ecccchh-hhHHHHH-------HhccCCHHHHhchhc------------------HHHHHHh-hC-------------CC
Q 020961 156 VQSHVRA-HVELMWL-------LSSATPIGWLNKMIQ------------------FKEKSHK-AG-------------GE 195 (319)
Q Consensus 156 ~QSd~~~-~~el~w~-------L~~~~s~~rL~R~~~------------------~k~~~~~-~~-------------~~ 195 (319)
+||++.+ +.+.+-. +.|.++-.+++..-. |.++... +. ..
T Consensus 335 ~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~ 414 (788)
T PLN02859 335 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQND 414 (788)
T ss_pred cccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhccCCeEEEEeccCCCC
Confidence 9999763 3332222 448888776642211 1111110 00 00
Q ss_pred Ccc-----cc-------------cccchHHHhhhhh---ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCC
Q 020961 196 NVG-----VA-------------LLTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (319)
Q Consensus 196 ~~~-----~g-------------~l~YP~LQAADIl---~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~ 254 (319)
+.+ .+ ..+||..-=|-.+ +.+.++++.|.|...+-..-.-+.+.|+
T Consensus 415 n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg------------- 481 (788)
T PLN02859 415 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLG------------- 481 (788)
T ss_pred CceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcC-------------
Confidence 000 01 1235554333222 2379999999999888877777777776
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020961 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 255 ~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 289 (319)
+..|...+. ++ .++ +| .||||+..
T Consensus 482 -----~~~P~~~~f---~r-Ln~-~~-t~LSKRkl 505 (788)
T PLN02859 482 -----LYQPYVWEY---SR-LNV-TN-TVMSKRKL 505 (788)
T ss_pred -----CCCCcEEee---ee-ECC-CC-CcccCcCc
Confidence 334666554 43 355 56 69999973
No 49
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.08 E-value=1.3e-05 Score=65.01 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=41.5
Q ss_pred EEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHH
Q 020961 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETA 139 (319)
Q Consensus 81 i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~ 139 (319)
+++|-.+ +.+|+||+.+ ++++.++++ .+++.++|.++...+.++..++++.+...
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~ 56 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESIE 56 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHHH
Confidence 5677778 8999999987 688888774 68999999998876555555555554443
No 50
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.06 E-value=2.3e-05 Score=80.70 Aligned_cols=81 Identities=22% Similarity=0.285 Sum_probs=52.7
Q ss_pred CceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE-EEEEeccc--------------------eecC-C--C--C
Q 020961 78 KKRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET-LFFIVDLH--------------------AITL-P--Y--D 127 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~-~ilIaDlh--------------------A~t~-~--~--~ 127 (319)
+..|-||+.|||.+||||+...+ .-+.+..+ |+++ +|+.+|.| .++. | . .
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 67899999999999999987655 22333332 7776 67899999 1222 1 1 1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccch
Q 020961 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (319)
Q Consensus 128 ~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~ 161 (319)
..-..++-....+.+-.+||+. +|+.+++.+
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~~---e~~s~te~Y 129 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGINP---EFIRASKQY 129 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCeE---EEEEHHHhh
Confidence 1223333445556666789964 688888854
No 51
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.88 E-value=3.8e-05 Score=75.66 Aligned_cols=67 Identities=24% Similarity=0.406 Sum_probs=31.3
Q ss_pred ccCCCEEEecCcchH---HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCC
Q 020961 214 LYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 290 (319)
Q Consensus 214 ~~~adivpvG~DQ~~---hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~ 290 (319)
.++.|+.|.|.|+-. -...+.+||+++ || .+.|..+.-. +-.+ +|.+|||||.
T Consensus 232 ~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i---~g--------------~~pP~~~~YE----~~~~-~g~~kmSsSk-- 287 (360)
T PF01921_consen 232 ALGVDFEPFGKDHASPGGSYDTSKRIAREI---LG--------------YEPPVPFPYE----FFLD-KGGGKMSSSK-- 287 (360)
T ss_dssp HTT-SEEEEEHHHHCTTSHHHHHHHHHHHC---C-------------------EEEEE------EEE-S-----------
T ss_pred hcCceeccCCCccCCCCCChhhHHHHHHHH---hC--------------CCCCCCCCee----EEEe-CCCcccccCC--
Confidence 357999999999999 999999999654 33 2235554422 2244 4556999998
Q ss_pred CCCeeecCC-----CHHHHH
Q 020961 291 DQSRINLLD-----PKDVSH 305 (319)
Q Consensus 291 ~~s~I~L~D-----spe~I~ 305 (319)
++.|.+.| +||.++
T Consensus 288 -G~~~t~~e~L~~~~PE~lr 306 (360)
T PF01921_consen 288 -GNGITPEEWLEYAPPESLR 306 (360)
T ss_dssp ------HHHHHTTS-HHHHH
T ss_pred -CCccCHHHHHHhcCHHHHH
Confidence 67776654 566554
No 52
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.86 E-value=5.6e-05 Score=68.85 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=79.7
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecccee-cCC-----CCHHHHH-HHHHHHHHHHHHcCCCC
Q 020961 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAI-TLP-----YDTQQLS-KATRETAAIYLACGIDN 149 (319)
Q Consensus 82 ~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~i-lIaDlhA~-t~~-----~~~~~l~-~~~~~~~~~~lA~GlDp 149 (319)
|++--|+|++||||....+ .-+.++.+ |++|+. ...|.|.. +.. ..++++. .....+.+++.++|+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 85 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF 85 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 5666789999999987754 22333333 788754 33433321 210 1133333 34457788888999987
Q ss_pred CCcEEEEcccchhhhHHHHHHhccCCHHHHhch-hcHHHHH------HhhCC-CCc----ccccccchH---HHhhhhhc
Q 020961 150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKM-IQFKEKS------HKAGG-ENV----GVALLTYPV---LMASDILL 214 (319)
Q Consensus 150 ~k~~if~QSd~~~~~el~w~L~~~~s~~rL~R~-~~~k~~~------~~~~~-~~~----~~g~l~YP~---LQAADIl~ 214 (319)
+ .++..|+........|.. |... ..++... ..+.+ .+. +=|..+|.. -.+.|=+.
T Consensus 86 d--~~~~es~~~~~~~~~i~~--------L~~~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~ 155 (212)
T cd00671 86 D--VWFGESSYLGLMGKVVEL--------LEELGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE 155 (212)
T ss_pred c--eecchhhhhhHHHHHHHH--------HHHCCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh
Confidence 5 345555542221112210 0000 0000000 00000 010 125556652 22222223
Q ss_pred cCCCEE--EecCcchHHHHHHHHHHHHhhh
Q 020961 215 YQSDFV--PVGEDQKQHLELTRELAERVNY 242 (319)
Q Consensus 215 ~~adiv--pvG~DQ~~hieLaRdiA~r~n~ 242 (319)
+++|.+ .+|.||..|+.-.+.+++.++.
T Consensus 156 ~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 156 RGADKIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred cCCCEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 578887 9999999999999999999984
No 53
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00021 Score=72.91 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=52.0
Q ss_pred CCceEEEeeCCCCcchhhhHHHHH---HHHHHHhc-cCcE-EEEEeccceecC--CC---CHHHHHHH------------
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAI---KNWIALQN-SYET-LFFIVDLHAITL--PY---DTQQLSKA------------ 134 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l---~~~~~lQ~-g~~~-~ilIaDlhA~t~--~~---~~~~l~~~------------ 134 (319)
...++=||+.|||.+||||+-=.+ .-...|.+ |+++ +|+++|.+-=+. |. +++.+.++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 577899999999999999984332 11223444 7776 778888876554 21 22333332
Q ss_pred ------HH----HHHHHHHHcCCCCCCcEEEEcccch
Q 020961 135 ------TR----ETAAIYLACGIDNSKASVFVQSHVR 161 (319)
Q Consensus 135 ------~~----~~~~~~lA~GlDp~k~~if~QSd~~ 161 (319)
++ .+.+.+--+|+++ +++.+|+.+
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~Y 132 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATELY 132 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce---EEEEhHHhh
Confidence 23 3444444569876 688888853
No 54
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.74 E-value=0.00011 Score=75.41 Aligned_cols=192 Identities=17% Similarity=0.164 Sum_probs=101.0
Q ss_pred eEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEeccceecCC------CCHHHHH-HHHHHHHHHHHHcC
Q 020961 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDLHAITLP------YDTQQLS-KATRETAAIYLACG 146 (319)
Q Consensus 80 ~i~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~i--lIaDlhA~t~~------~~~~~l~-~~~~~~~~~~lA~G 146 (319)
.-|+|--|+|.+|+||..+++ .-+.++.+ |++|.. -+.|+-..+.. ..++.+. .....+.++|..+|
T Consensus 115 Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~Lg 194 (507)
T PRK01611 115 VEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLG 194 (507)
T ss_pred EEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345688999999999998765 22444433 788643 56676433320 1233333 34567888899999
Q ss_pred CCCCCcEEEEcccchhhhHHHHHHhccCCHHHHhch-hcH-HHH------HHhhCCC-Cc----ccccccchHHHhhhhh
Q 020961 147 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM-IQF-KEK------SHKAGGE-NV----GVALLTYPVLMASDIL 213 (319)
Q Consensus 147 lDp~k~~if~QSd~~~~~el~w~L~~~~s~~rL~R~-~~~-k~~------~~~~~~~-~~----~~g~l~YP~LQAADIl 213 (319)
+.+| .+++.|+........+.+. +|... ..+ ... ...++++ +. +=|..+|. +.||-
T Consensus 195 I~~D--~~~~es~~~~~~~~~~~~~------~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~~Y~---t~Dia 263 (507)
T PRK01611 195 VHFD--VWFSESELYYNGKVDEVVE------DLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTYTYF---TRDIA 263 (507)
T ss_pred Ceee--EEeecCcchhcchHHHHHH------HHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCccch---HHHHH
Confidence 9876 3455554321111111111 11110 001 000 0111110 00 12445563 33554
Q ss_pred cc-------CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCC
Q 020961 214 LY-------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (319)
Q Consensus 214 ~~-------~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSK 286 (319)
+. +--+-.+|.||..|+.-...+++.++.. . ...-..++... .++-+ .+| +||||
T Consensus 264 ~~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~--~-------------~~~~~~~h~~~-glv~~-~~g-~KMSk 325 (507)
T PRK01611 264 YHLYKFERFDRVIYVVGADHHGHFKRLKAALKALGYD--P-------------DALEVLLHQMV-GLVRG-GEG-VKMST 325 (507)
T ss_pred HHHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCCC--c-------------ccceEEEEEEE-EeeEC-CCC-CcccC
Confidence 32 3444589999999999999999998832 0 00000222211 22222 244 79999
Q ss_pred CCCCCCCeeecCCCHHH
Q 020961 287 SAPSDQSRINLLDPKDV 303 (319)
Q Consensus 287 S~p~~~s~I~L~Dspe~ 303 (319)
|. ++.|.+.|==++
T Consensus 326 R~---Gn~i~l~dll~~ 339 (507)
T PRK01611 326 RA---GNVVTLDDLLDE 339 (507)
T ss_pred CC---CceeEHHHHHHH
Confidence 98 789988664443
No 55
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.69 E-value=0.00013 Score=75.55 Aligned_cols=92 Identities=13% Similarity=0.039 Sum_probs=65.7
Q ss_pred EEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020961 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 81 i~tGi--~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
+.+=| .|||.|||||...++.+|.--+. +..+++-|-|. |+ ....+....+.+++..+|+++|. .+++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDT-------d~~r~~~e~~~~I~~dL~wLGi~~d~-~~~~ 101 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDT-------NPEKEDQEYVDSIKEDVRWLGFDWSG-ELRY 101 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CCCcCChHHHHHHHHHHHHcCCCCCC-Ccee
Confidence 55555 56799999999999999875554 66777777776 33 23456677888899999999953 3689
Q ss_pred cccchh-hhHHHHH-------HhccCCHHHHh
Q 020961 157 QSHVRA-HVELMWL-------LSSATPIGWLN 180 (319)
Q Consensus 157 QSd~~~-~~el~w~-------L~~~~s~~rL~ 180 (319)
||+..+ +.+.+.. +.|.++-.+++
T Consensus 102 qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~ 133 (554)
T PRK05347 102 ASDYFDQLYEYAVELIKKGKAYVDDLSAEEIR 133 (554)
T ss_pred eecCHHHHHHHHHHHHHcCCEeeCCCCHHHHH
Confidence 999754 3333332 44888877764
No 56
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.69 E-value=0.00046 Score=66.16 Aligned_cols=64 Identities=25% Similarity=0.366 Sum_probs=39.1
Q ss_pred CCCCcchhhhHHHHH-----HHHHHHhccCcEEE-EEeccceecC-----C--C-------------CH-HHHHHHHHHH
Q 020961 86 QPTGSIHLGNYLGAI-----KNWIALQNSYETLF-FIVDLHAITL-----P--Y-------------DT-QQLSKATRET 138 (319)
Q Consensus 86 ~PTG~lHLGhylg~l-----~~~~~lQ~g~~~~i-lIaDlhA~t~-----~--~-------------~~-~~l~~~~~~~ 138 (319)
-|+|.+||||+.+.+ .++.++ .|++|.+ .-.|.|..-. . . .+ +-.+++...+
T Consensus 10 ~~~g~~HiGH~~~~i~~D~i~R~~r~-~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (312)
T cd00668 10 YANGSLHLGHALTHIIADFIARYKRM-RGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEH 88 (312)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHh-CCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHH
Confidence 357999999998733 444443 3788744 5567776532 0 0 11 2233445667
Q ss_pred HHHHHHcCCCCC
Q 020961 139 AAIYLACGIDNS 150 (319)
Q Consensus 139 ~~~~lA~GlDp~ 150 (319)
.+++.++|++.+
T Consensus 89 ~~~l~~lgI~~D 100 (312)
T cd00668 89 KEDFRRLGISYD 100 (312)
T ss_pred HHHHHHhCcccc
Confidence 788888998655
No 57
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.60 E-value=0.00017 Score=74.41 Aligned_cols=88 Identities=9% Similarity=-0.029 Sum_probs=63.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh-
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~- 162 (319)
.|||.|||||...++.+|.--+. +..+++-|-|. |+ ....+....+.+++..+|+++|. .+++||+..+
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDT-------d~~r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~~~~~ 79 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDT-------NPVKEDPEYVESIKRDVEWLGFKWEG-KIRYSSDYFDE 79 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC-------CcccCChHHHHHHHHHHHHcCCCCCC-CceEccccHHH
Confidence 58899999999999999875554 66777788776 33 23456677888899999999953 3688999654
Q ss_pred hhHHHHH-------HhccCCHHHHhc
Q 020961 163 HVELMWL-------LSSATPIGWLNK 181 (319)
Q Consensus 163 ~~el~w~-------L~~~~s~~rL~R 181 (319)
+.+.+-. +.|.++-.++++
T Consensus 80 ~~~~a~~Li~~G~AY~c~cs~eel~~ 105 (522)
T TIGR00440 80 LYRYAEELIKKGLAYVDELTPEEIRE 105 (522)
T ss_pred HHHHHHHHHHcCCEEeecCCHHHHHH
Confidence 3222211 448888777643
No 58
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.60 E-value=0.00016 Score=75.03 Aligned_cols=92 Identities=12% Similarity=0.019 Sum_probs=66.1
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020961 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi--~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.+.+=| .|||.|||||...++.+|..-+. +..+++-|-|. |+ ....+....+.+++..+|+++++ ++
T Consensus 51 kv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDT-------Dp~r~~~e~~~~I~~dL~wLGi~~D~--~~ 121 (574)
T PTZ00437 51 KPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDT-------NPETEEQVYIDAIMEMVKWMGWKPDW--VT 121 (574)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC--CC
Confidence 455555 56799999999999999875554 66788888776 33 23456677888999999999985 56
Q ss_pred Ecccchh-hhHHHHH-------HhccCCHHHHh
Q 020961 156 VQSHVRA-HVELMWL-------LSSATPIGWLN 180 (319)
Q Consensus 156 ~QSd~~~-~~el~w~-------L~~~~s~~rL~ 180 (319)
.||++.+ +.+.+-. +.|.++-.+++
T Consensus 122 ~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~ 154 (574)
T PTZ00437 122 FSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELK 154 (574)
T ss_pred cCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHH
Confidence 8999755 2222221 44888887765
No 59
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.54 E-value=0.00022 Score=76.50 Aligned_cols=94 Identities=12% Similarity=0.125 Sum_probs=65.9
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020961 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 80 ~i~tGi--~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
.+.+=| .|||.+||||...++.+|.--+. +..+++-|-|. |+ ....+....+.+++.++|++++. .++
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDT-------d~~r~~~e~~~~I~~dl~wLG~~wd~-~~~ 102 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDT-------NPETEDTEYVEAIKDDVRWLGFDWGE-HLY 102 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCC-------CCCcCChHHHHHHHHHHHHcCCCCCC-Cce
Confidence 355666 56799999999999999875544 66778888776 33 23456677888899999999975 368
Q ss_pred Ecccchhh-hHHHH-------HHhccCCHHHHhc
Q 020961 156 VQSHVRAH-VELMW-------LLSSATPIGWLNK 181 (319)
Q Consensus 156 ~QSd~~~~-~el~w-------~L~~~~s~~rL~R 181 (319)
+||+..+. .+.+- .+.|.++-.++++
T Consensus 103 ~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~ 136 (771)
T PRK14703 103 YASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRE 136 (771)
T ss_pred EeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHH
Confidence 99996442 22111 1558888776643
No 60
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.52 E-value=0.00023 Score=73.94 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=65.8
Q ss_pred ceEEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020961 79 KRIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 79 ~~i~tGi--~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
-.+.+=| .|||.+||||...++.+|..-+. +..+++-|-|. |+ ....+....+.+++.++|++|+ .+
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDT-------Dp~R~~~e~~~~I~edL~wLGi~~d--~~ 162 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDT-------DPRRVKPEAYDMILEDLDWLGVKGD--EV 162 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcC-------CcccccHHHHHHHHHHHHHcCCCCC--cc
Confidence 3466666 55699999999999988875443 56777777776 32 3344567788899999999998 47
Q ss_pred EEcccchhh-hHHHH-------HHhccCCHHHHh
Q 020961 155 FVQSHVRAH-VELMW-------LLSSATPIGWLN 180 (319)
Q Consensus 155 f~QSd~~~~-~el~w-------~L~~~~s~~rL~ 180 (319)
+.||+..+. .+..= .+.|.++-.+++
T Consensus 163 ~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 163 VYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred ccccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 899996432 22111 155888887774
No 61
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.52 E-value=0.00082 Score=68.36 Aligned_cols=74 Identities=8% Similarity=-0.009 Sum_probs=47.9
Q ss_pred CCceEE-EeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cccee-cC------CCCHHH-HHHHHHHHHHHH
Q 020961 77 VKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-TL------PYDTQQ-LSKATRETAAIY 142 (319)
Q Consensus 77 ~~~~i~-tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~ilIa-DlhA~-t~------~~~~~~-l~~~~~~~~~~~ 142 (319)
..+.+| +|--|.|.+||||..+.+ .-+.++++ |++|++..+ |.|.- +. ..++++ .+++...+.+++
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345666 898999999999987654 22334433 788887665 43321 10 124433 455677889999
Q ss_pred HHcCC-CCC
Q 020961 143 LACGI-DNS 150 (319)
Q Consensus 143 lA~Gl-Dp~ 150 (319)
.++|+ .|+
T Consensus 102 ~~Lgi~~~d 110 (463)
T PRK00260 102 DALNVLPPD 110 (463)
T ss_pred HHcCCCCCC
Confidence 99999 554
No 62
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.41 E-value=0.00066 Score=65.47 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=40.8
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 020961 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 86 ~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~~-l~~~~~~~~~~~lA~GlDp~ 150 (319)
-|+|.+||||..+.+ .-+.++++ |++|.+ .-.|.|..-. ..++++ .+++...+.+++.++|+.++
T Consensus 10 y~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 10 YPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 368999999987755 12333333 788755 5566664321 124433 45566778888899999776
No 63
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.25 E-value=0.0044 Score=56.92 Aligned_cols=71 Identities=11% Similarity=0.003 Sum_probs=44.3
Q ss_pred ceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccceecC-------CCCH-HHHHHHHHHHHHHHHHc
Q 020961 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYLAC 145 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~-~~l~~~~~~~~~~~lA~ 145 (319)
....+|-=|-|.+||||....+ .-+.++++ |++|++.. .|.|..=. ..++ +-.+++...+.+++.++
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l 101 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL 101 (213)
T ss_pred eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 4555677777999999976544 22333333 78876654 45554311 1244 34456677888888899
Q ss_pred CCCC
Q 020961 146 GIDN 149 (319)
Q Consensus 146 GlDp 149 (319)
|+.+
T Consensus 102 ~i~~ 105 (213)
T cd00672 102 NVLP 105 (213)
T ss_pred CCCC
Confidence 9986
No 64
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=96.32 E-value=0.051 Score=55.52 Aligned_cols=73 Identities=12% Similarity=-0.008 Sum_probs=45.7
Q ss_pred ceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cccee-c-C-----CCCHHHH-HHHHHHHHHHHHHc
Q 020961 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-T-L-----PYDTQQL-SKATRETAAIYLAC 145 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~ilIa-DlhA~-t-~-----~~~~~~l-~~~~~~~~~~~lA~ 145 (319)
....+|.=|-|.+||||..+.+ .-+.++++ |++|.+..+ |.|.- + . ..+++++ +.+...+.+++.++
T Consensus 23 ~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~L 102 (465)
T TIGR00435 23 KMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKAL 102 (465)
T ss_pred eEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456777788999999987655 22333333 788866543 55422 1 0 1244333 45667888899999
Q ss_pred CCCCCC
Q 020961 146 GIDNSK 151 (319)
Q Consensus 146 GlDp~k 151 (319)
|+.++.
T Consensus 103 gI~~d~ 108 (465)
T TIGR00435 103 NVLPPD 108 (465)
T ss_pred CCCCCc
Confidence 997653
No 65
>PLN02946 cysteine-tRNA ligase
Probab=96.25 E-value=0.061 Score=56.21 Aligned_cols=73 Identities=12% Similarity=-0.055 Sum_probs=43.9
Q ss_pred CCCceEEEeeCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccce--ecC-----CCCHHH-HHHHHHHHHH
Q 020961 76 SVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHA--ITL-----PYDTQQ-LSKATRETAA 140 (319)
Q Consensus 76 ~~~~~i~tGi~PT--G~lHLGhylg~l--~~~~~lQ~--g~~~~ilI-aDlhA--~t~-----~~~~~~-l~~~~~~~~~ 140 (319)
+..+.+|+- .|| +.+||||....+ .-+.++.+ |++|.+.. .|.|. ++. ..++.+ .++++..+.+
T Consensus 78 ~~~v~~Y~C-GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~ 156 (557)
T PLN02946 78 EGKVGMYVC-GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLS 156 (557)
T ss_pred CCceeEEEe-CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345566643 677 889999987654 22333333 78876532 33332 121 225544 4566778888
Q ss_pred HHHHcCCCC
Q 020961 141 IYLACGIDN 149 (319)
Q Consensus 141 ~~lA~GlDp 149 (319)
++.++|+.+
T Consensus 157 d~~~LnI~~ 165 (557)
T PLN02946 157 DMAYLHCLP 165 (557)
T ss_pred HHHHCCCCC
Confidence 999999853
No 66
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=94.96 E-value=0.041 Score=55.61 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=64.2
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcE---
Q 020961 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS--- 153 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~--- 153 (319)
+|+---=-|||.+|||-...++.|++--.+ +.++++-|-|- |. ..+....+.+.+++..+||+||..-
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDT-------Dq~R~v~gs~e~i~~~L~w~nl~~DEgP~~g 106 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDT-------DQKRLIRGSEEAIYEDLKWANLDWDEGPGVG 106 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccc-------cccccccchHHHHHHHHHhcCCCcccCCCcC
Confidence 344444457899999999999988875555 67888888875 22 2344455667788899999999754
Q ss_pred ----EEEcccchhhh-HHHHH-------HhccCCHHHHhc
Q 020961 154 ----VFVQSHVRAHV-ELMWL-------LSSATPIGWLNK 181 (319)
Q Consensus 154 ----if~QSd~~~~~-el~w~-------L~~~~s~~rL~R 181 (319)
=|.||+-.+.- .-+.. +.|+++-.||..
T Consensus 107 G~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~ 146 (524)
T KOG1149|consen 107 GPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDL 146 (524)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHH
Confidence 37799854421 11111 348888777543
No 67
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=94.75 E-value=0.09 Score=55.98 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=54.0
Q ss_pred CCceEEEee-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecc-ceecC-------CCCH-HHHHHHHHHHHHHH
Q 020961 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDL-HAITL-------PYDT-QQLSKATRETAAIY 142 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~ilIaDl-hA~t~-------~~~~-~~l~~~~~~~~~~~ 142 (319)
++..|.+++ -|+|.+||||..+.+ .-+.++++ |++|+++-++. |..-. ..++ +-..++...+.+++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 81 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 356777777 689999999987755 22333333 78887766544 43321 1244 34466778889999
Q ss_pred HHcCCCCCCcEEEEcccchhh
Q 020961 143 LACGIDNSKASVFVQSHVRAH 163 (319)
Q Consensus 143 lA~GlDp~k~~if~QSd~~~~ 163 (319)
.++|++++. |....-++|
T Consensus 82 ~~l~i~~d~---f~rtt~~~h 99 (673)
T PRK00133 82 AGFGISFDN---YGSTHSEEN 99 (673)
T ss_pred HHhCCCCCC---CccCCcHHH
Confidence 999998873 444443444
No 68
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.12 E-value=0.17 Score=53.02 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=57.0
Q ss_pred CceEEEee-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~~-l~~~~~~~~~~~l 143 (319)
+..|-|.+ -|.|.+||||....+ .-|.++|+ |+++++ +=.|-|..-. ..+|++ +.++......+|.
T Consensus 6 ~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~ 85 (558)
T COG0143 6 KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFK 85 (558)
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44444444 578999999987655 44777776 888766 5566676532 236654 4667778999999
Q ss_pred HcCCCCCCcEEEEcccchhhhH
Q 020961 144 ACGIDNSKASVFVQSHVRAHVE 165 (319)
Q Consensus 144 A~GlDp~k~~if~QSd~~~~~e 165 (319)
+++|+-|. |....-+.|.+
T Consensus 86 ~l~IsfD~---F~rTt~~~h~~ 104 (558)
T COG0143 86 ALNISFDN---FIRTTSPEHKE 104 (558)
T ss_pred HhCCcccc---cccCCCHHHHH
Confidence 99998763 55555544543
No 69
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=93.60 E-value=0.29 Score=48.89 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=45.1
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEeccceecC-------CCCHH-HHHHHHHHHHHHHHHcCCCCCCc
Q 020961 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 86 ~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~-~l~~~~~~~~~~~lA~GlDp~k~ 152 (319)
-|.|.+||||..+.+ .-+.++++ |+++++ .=.|-|..-. ..+++ -+.++...+.+.+.++||+.|.
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D~- 87 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYDR- 87 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SE-
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCcc-
Confidence 478999999987654 12333332 788755 6688887653 23665 4466778899999999999983
Q ss_pred EEEEcccchhhh
Q 020961 153 SVFVQSHVRAHV 164 (319)
Q Consensus 153 ~if~QSd~~~~~ 164 (319)
|.+..-.+|.
T Consensus 88 --F~rTt~~~h~ 97 (391)
T PF09334_consen 88 --FIRTTDDRHK 97 (391)
T ss_dssp --EEETTSHHHH
T ss_pred --eeCCCCHHHH
Confidence 6665544453
No 70
>PLN02224 methionine-tRNA ligase
Probab=93.04 E-value=0.57 Score=49.70 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=50.5
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceec--C-----CCCH-HHHHHHHHHHHHHHH
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAIT--L-----PYDT-QQLSKATRETAAIYL 143 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~--~~~~lQ~--g~~~~i-lIaDlhA~t--~-----~~~~-~~l~~~~~~~~~~~l 143 (319)
++.|-+++ -|+|.+||||..+.+. -+.++++ |++|++ .=.|-|..- . ..++ +.+++++..+.+.+.
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~ 149 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK 149 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 46677777 7889999999877552 2333433 788866 456777632 1 1233 556677778888999
Q ss_pred HcCCCCCC
Q 020961 144 ACGIDNSK 151 (319)
Q Consensus 144 A~GlDp~k 151 (319)
++|+++|.
T Consensus 150 ~l~I~~D~ 157 (616)
T PLN02224 150 DLDIAYDK 157 (616)
T ss_pred HcCCCCCc
Confidence 99999973
No 71
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.64 E-value=0.28 Score=51.04 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=45.3
Q ss_pred eEEEee--CCCCcchhhhHHHHHHHHHHHhcc-CcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020961 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 80 ~i~tGi--~PTG~lHLGhylg~l~~~~~lQ~g-~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
.|.+-| +|||.+||||.--++.+|---|.. .++++-.-|- +|. .+-.+--..+.+++--+||.|++++ .
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDT----NPa--KE~~eFe~~IleDl~~LgIkpd~~T--y 271 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDT----NPA--KENEEFEDVILEDLSLLGIKPDRVT--Y 271 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCC----Ccc--hhhHHHHHHHHHHHHHhCcCcceee--e
Confidence 566666 789999999999888777644442 3444444332 322 1222223345666667799999643 4
Q ss_pred cccch
Q 020961 157 QSHVR 161 (319)
Q Consensus 157 QSd~~ 161 (319)
-||+.
T Consensus 272 TSDyF 276 (712)
T KOG1147|consen 272 TSDYF 276 (712)
T ss_pred chhhH
Confidence 56654
No 72
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=91.94 E-value=0.67 Score=50.55 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=48.8
Q ss_pred CceEEEeeCCC--CcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCH-HHHHHHHHHHHHHH
Q 020961 78 KKRIVSGVQPT--GSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIY 142 (319)
Q Consensus 78 ~~~i~tGi~PT--G~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~-~~l~~~~~~~~~~~ 142 (319)
++.+..|+ |+ |.+|+||.++.+.+ +.++|. |++|.+.. .|-|.+-. ..++ +-..++...+.+++
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~ 111 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL 111 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 57777776 66 99999999876532 444554 78887655 56655431 1233 45566778899999
Q ss_pred HHcCCCCC
Q 020961 143 LACGIDNS 150 (319)
Q Consensus 143 lA~GlDp~ 150 (319)
.++|+..|
T Consensus 112 ~~lGi~~D 119 (805)
T PRK00390 112 KSLGFSYD 119 (805)
T ss_pred HHhCCccc
Confidence 99998444
No 73
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=91.39 E-value=0.57 Score=48.51 Aligned_cols=71 Identities=24% Similarity=0.382 Sum_probs=46.5
Q ss_pred eEEEeeCCC--CcchhhhHHHH-H-----HHHHHHhccCcEEEEE-eccceecC-------CCCHH-HHHHHHHHHHHHH
Q 020961 80 RIVSGVQPT--GSIHLGNYLGA-I-----KNWIALQNSYETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAIY 142 (319)
Q Consensus 80 ~i~tGi~PT--G~lHLGhylg~-l-----~~~~~lQ~g~~~~ilI-aDlhA~t~-------~~~~~-~l~~~~~~~~~~~ 142 (319)
.+.+.-=|+ |.+||||..+. + .++.+++ |++|++.. .|.|..-. ..+++ -.++++..+.+++
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~-G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLK-GNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHHHHHHHHHHhc-CCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344444455 99999998875 2 4444433 78887644 56664322 12443 4466788899999
Q ss_pred HHcCCCCCC
Q 020961 143 LACGIDNSK 151 (319)
Q Consensus 143 lA~GlDp~k 151 (319)
.++|++++.
T Consensus 84 ~~l~i~~d~ 92 (556)
T PRK12268 84 KKLGISYDL 92 (556)
T ss_pred HHcCCcCCC
Confidence 999999874
No 74
>PLN02610 probable methionyl-tRNA synthetase
Probab=91.37 E-value=0.97 Score=49.41 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCceEEEee-CCCCcchhhhHHHH-H--HHHHHHhc--cCcEEEEE-eccceecC-------CCCHH-HHHHHHHHHHHH
Q 020961 77 VKKRIVSGV-QPTGSIHLGNYLGA-I--KNWIALQN--SYETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAI 141 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhylg~-l--~~~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~-~l~~~~~~~~~~ 141 (319)
++..|-+.+ -|+|.+||||..+. + .-+.++++ |++++++. .|-|..-. ..+++ -+.++...+.+.
T Consensus 17 ~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~ 96 (801)
T PLN02610 17 RNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEV 96 (801)
T ss_pred CCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345555555 56799999998863 3 33555554 78887755 56676542 23554 445566778888
Q ss_pred HHHcCCCCCCcEEEEcccchhhhH
Q 020961 142 YLACGIDNSKASVFVQSHVRAHVE 165 (319)
Q Consensus 142 ~lA~GlDp~k~~if~QSd~~~~~e 165 (319)
|.++||+.|. |....-++|.+
T Consensus 97 ~~~l~i~~D~---f~rT~~~~h~~ 117 (801)
T PLN02610 97 YDWFDISFDK---FGRTSTPQQTE 117 (801)
T ss_pred HHHcCCcccc---CccCCCHHHHH
Confidence 9999999883 33344445543
No 75
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=89.73 E-value=1 Score=45.92 Aligned_cols=66 Identities=15% Similarity=0.290 Sum_probs=41.7
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEeccceecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCCC
Q 020961 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 86 ~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~-~~l~~~~~~~~~~~lA~GlDp~k 151 (319)
-|+|.+||||..+.+ .-+.+.++ |+++.+ +-.|.|..-. ..++ +-.+.+...+.+++.++|++++.
T Consensus 11 ~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D~ 89 (511)
T PRK11893 11 YPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYDD 89 (511)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 356999999986644 22333433 788866 4455554311 1244 34455667888999999998873
No 76
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=89.67 E-value=1.4 Score=48.37 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=46.8
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHHH
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIYL 143 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilIa-DlhA~t~-------~~~~-~~l~~~~~~~~~~~l 143 (319)
++.+..|+ -|||.+|+||.++.+.. +.+++. |++|.+..+ |-|.+-. ..++ +-..+++..+.+++.
T Consensus 30 k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~ 109 (842)
T TIGR00396 30 KYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQ 109 (842)
T ss_pred CEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35666664 45699999998875522 444554 888877554 5555421 1133 455677888999999
Q ss_pred HcCCCC
Q 020961 144 ACGIDN 149 (319)
Q Consensus 144 A~GlDp 149 (319)
++|+..
T Consensus 110 ~lG~~~ 115 (842)
T TIGR00396 110 ALGFSY 115 (842)
T ss_pred HhCCcc
Confidence 999744
No 77
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=89.05 E-value=2.7 Score=43.50 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=45.1
Q ss_pred CCCCceEEE-eeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE--EeccceecC----------------CCCHH-H
Q 020961 75 SSVKKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDLHAITL----------------PYDTQ-Q 130 (319)
Q Consensus 75 ~~~~~~i~t-Gi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~il--IaDlhA~t~----------------~~~~~-~ 130 (319)
.+..+++|+ |.-+-+.+||||....+ .-+.++.+ |++|++. |+|+--++. ..++. -
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~ 99 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEI 99 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHH
Confidence 344566664 44444889999987754 22333332 7888765 577721111 12443 3
Q ss_pred HHHHHHHHHHHHHHcCCCCC
Q 020961 131 LSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 131 l~~~~~~~~~~~lA~GlDp~ 150 (319)
.+++...+.+++.++|+.+.
T Consensus 100 a~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 100 AAHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 34566778889999999764
No 78
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=89.01 E-value=0.8 Score=47.17 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=41.1
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccceecC-------CCCHHHH-HHHHHHHHHHHHHcCCCCCC
Q 020961 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-------PYDTQQL-SKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 87 PTG~lHLGhylg~l--~~~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~~l-~~~~~~~~~~~lA~GlDp~k 151 (319)
|+|.+||||....+ .-+.++++ |++|.+.. .|.|..-. ..+++++ +++...+.+++.++|+++|.
T Consensus 10 ~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 87 (530)
T TIGR00398 10 ANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFDR 87 (530)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 78999999987654 12333333 78886644 55553321 1245444 44567888899999998763
No 79
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=88.56 E-value=0.95 Score=43.67 Aligned_cols=65 Identities=23% Similarity=0.315 Sum_probs=41.8
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceecC-------CCCHHHH-HHHHHHHHHHHHHcCCCCCC
Q 020961 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL-------PYDTQQL-SKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 87 PTG~lHLGhylg~l~~--~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~~l-~~~~~~~~~~~lA~GlDp~k 151 (319)
|+|.+||||..+.+.. +.++++ |++|.+ .=.|.|..-. ..+++++ +.+...+.+++.++|+++|.
T Consensus 11 ~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 4599999999885522 333333 788765 4466664421 1245444 44567788899999998874
No 80
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=87.59 E-value=1 Score=47.78 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=42.7
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEeccceecC-------CCCHH-HHHHHHHHHHHHHHHcCCCCCC
Q 020961 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 86 ~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~-~l~~~~~~~~~~~lA~GlDp~k 151 (319)
-|+|.+||||..+.+ .-+.++++ |+++++ +=.|.|..-. ..+++ -+.++...+.+++.++|+++|.
T Consensus 14 y~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D~ 92 (648)
T PRK12267 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDK 92 (648)
T ss_pred CCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 456999999987654 22334433 788755 5567776532 12443 3455667888899999998763
No 81
>PLN02563 aminoacyl-tRNA ligase
Probab=87.46 E-value=3.9 Score=45.68 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=48.6
Q ss_pred CceEEEee-CCCCc-chhhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHH
Q 020961 78 KKRIVSGV-QPTGS-IHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIY 142 (319)
Q Consensus 78 ~~~i~tGi-~PTG~-lHLGhylg~l~--~~~~lQ~--g~~~~ilIa-DlhA~t~-------~~~~-~~l~~~~~~~~~~~ 142 (319)
++.+.+|+ -|+|. +|+||.++.+. -+.+++. |++|++..+ |-|.+-. ...+ +...+++..+.+++
T Consensus 111 k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~ 190 (963)
T PLN02563 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQL 190 (963)
T ss_pred CEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHH
Confidence 35677786 56797 99999887552 2445544 888877554 5565531 1122 34567778889999
Q ss_pred HHcCC--CCCC
Q 020961 143 LACGI--DNSK 151 (319)
Q Consensus 143 lA~Gl--Dp~k 151 (319)
..+|+ |.++
T Consensus 191 ~~lG~s~DW~r 201 (963)
T PLN02563 191 KSLGFSYDWDR 201 (963)
T ss_pred HHhCcEeeCCC
Confidence 99995 6665
No 82
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=87.20 E-value=0.51 Score=49.32 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=45.4
Q ss_pred CEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCcc-ccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020961 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 218 divpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~-l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 296 (319)
-|-.+|.||..|+.-...+++.++. +.|.- .+... ++-.+ .|||||. ++.|.
T Consensus 330 iI~V~g~~q~~h~~~v~~~l~~lG~------------------~~~~~l~h~~~-----~~V~~-~kmSkr~---Gn~V~ 382 (566)
T TIGR00456 330 MIYVWGSDHHLHIAQFFAILEKLGF------------------YKKKELIHLNF-----GMVPL-GSMKTRR---GNVIS 382 (566)
T ss_pred EEEEecCcHHHHHHHHHHHHHHcCC------------------CCCCceEEEEE-----EEEEC-CCCCccC---Cceee
Confidence 4467999999999999999999983 22422 22211 22233 6999998 79999
Q ss_pred cCCCHHHHHHhhhc
Q 020961 297 LLDPKDVSHKFFRR 310 (319)
Q Consensus 297 L~Dspe~I~kKI~~ 310 (319)
+.|=.++..++...
T Consensus 383 ~~dll~~~~~ra~~ 396 (566)
T TIGR00456 383 LDNLLDEASKRAGN 396 (566)
T ss_pred HHHHHHHHHHHHHH
Confidence 98766665554433
No 83
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=87.07 E-value=1.1 Score=43.77 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=23.4
Q ss_pred CCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEecccee
Q 020961 87 PTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAI 122 (319)
Q Consensus 87 PTG~lHLGhylg~l~--~~~~lQ~--g~~~~i-lIaDlhA~ 122 (319)
|+|.+||||..+.+. -+.++++ |++|.+ .-.|-|.+
T Consensus 12 vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 12 ANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence 579999999987552 2333433 788855 44566555
No 84
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=86.71 E-value=0.55 Score=46.62 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccce
Q 020961 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHA 121 (319)
Q Consensus 87 PTG~lHLGhylg~l~~--~~~lQ~--g~~~~i-lIaDlhA 121 (319)
|+|.+||||..+.+.. +.++++ |++|++ .=.|-|.
T Consensus 12 ~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG 51 (382)
T cd00817 12 VTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAG 51 (382)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCC
Confidence 6799999999876522 444544 788866 4456664
No 85
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=86.44 E-value=0.58 Score=51.74 Aligned_cols=57 Identities=26% Similarity=0.275 Sum_probs=34.5
Q ss_pred ccCCCEEEecCcch---HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCC
Q 020961 214 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 290 (319)
Q Consensus 214 ~~~adivpvG~DQ~---~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~ 290 (319)
.+-+|+...|.||. .|-.+-..++- + |.. .|..++. + .++... +| +|||||.
T Consensus 543 ~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~----g~~--------------P~k~vl~-H-G~vld~-~G-~KMSKSl-- 597 (912)
T PRK05743 543 GYPADLYLEGSDQHRGWFQSSLLTSVAT-R----GKA--------------PYKQVLT-H-GFTVDG-KG-RKMSKSL-- 597 (912)
T ss_pred CCCceEEEecccccchHHHHHHHHHHHh-c----CCC--------------ccceeEE-e-eeEECC-CC-CCCCCCC--
Confidence 45699999999997 44555555443 2 221 2333332 1 345443 56 8999998
Q ss_pred CCCeee
Q 020961 291 DQSRIN 296 (319)
Q Consensus 291 ~~s~I~ 296 (319)
+|.|.
T Consensus 598 -GNvId 602 (912)
T PRK05743 598 -GNVID 602 (912)
T ss_pred -CCcCC
Confidence 67764
No 86
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=86.07 E-value=0.41 Score=48.75 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=34.7
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020961 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 295 (319)
..|+...|.||...+-.. .+|.-+.. | .+.|..++.. .++. + +| +|||||. +|.|
T Consensus 254 ~~D~~~~G~D~~~~h~~~-~~a~~~a~--~--------------~~~p~~~~~~--g~v~-~-~G-~KMSKS~---GN~i 308 (511)
T PRK11893 254 PADVHLIGKDILRFHAVY-WPAFLMAA--G--------------LPLPKRVFAH--GFLT-L-DG-EKMSKSL---GNVI 308 (511)
T ss_pred CCcceEecccccccchhH-HHHHHHhC--C--------------CCCCCEEEee--ccEE-E-CC-eeecccC---CcEE
Confidence 578999999998853222 12222211 1 1236554432 3342 4 66 7999998 7888
Q ss_pred ecCC
Q 020961 296 NLLD 299 (319)
Q Consensus 296 ~L~D 299 (319)
.+.|
T Consensus 309 ~~~d 312 (511)
T PRK11893 309 DPFD 312 (511)
T ss_pred cHHH
Confidence 7743
No 87
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=83.37 E-value=0.99 Score=44.09 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=32.7
Q ss_pred cCCCEEEecCcchH---HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCcc-ccCCCCcccccCCCCCCcCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLSKMSKSAPS 290 (319)
Q Consensus 215 ~~adivpvG~DQ~~---hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~-l~~~~~~~l~~L~dg~~KMSKS~p~ 290 (319)
+.+|+.+.|.||.. |..+..-++ + +|.. .|.. +.+ ..+... +| +|||||.
T Consensus 251 ~p~d~~~~GkDii~~wf~~~~~~~~~--~---~~~~--------------p~~~~~~h---g~~~~~-~g-~KmSKS~-- 304 (338)
T cd00818 251 FPADFILEGSDQTRGWFYSLLLLSTA--L---FGKA--------------PYKNVIVH---GFVLDE-DG-RKMSKSL-- 304 (338)
T ss_pred CCCeEEeecchHHhHHHHHHHHHHHH--h---cCCC--------------ccceEEEE---eeEECC-CC-CCCCCCC--
Confidence 34689999999974 444433322 1 1211 1223 332 334332 56 7999998
Q ss_pred CCCeeecCC
Q 020961 291 DQSRINLLD 299 (319)
Q Consensus 291 ~~s~I~L~D 299 (319)
+|.|.+.|
T Consensus 305 -gn~i~~~~ 312 (338)
T cd00818 305 -GNYVDPQE 312 (338)
T ss_pred -CCcCCHHH
Confidence 78888754
No 88
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.19 E-value=2.2 Score=46.80 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=49.6
Q ss_pred CCceEEEee-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccceecCC---------CCH-HHHHHHHHHHHHH
Q 020961 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAITLP---------YDT-QQLSKATRETAAI 141 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~ilIaDlhA~t~~---------~~~-~~l~~~~~~~~~~ 141 (319)
.+++|..=| -|||.+|+||..+-. .-+.++++ |++|.+-++ |||+=.| .+| .-...|+.++..+
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~q 112 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQ 112 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 466666666 799999999975432 22333433 788877654 7776443 245 3456788899999
Q ss_pred HHHcCC--CCCC
Q 020961 142 YLACGI--DNSK 151 (319)
Q Consensus 142 ~lA~Gl--Dp~k 151 (319)
+.++|+ |.++
T Consensus 113 lk~lG~siDW~R 124 (814)
T COG0495 113 LKSLGFSIDWRR 124 (814)
T ss_pred HHHhCCcccccc
Confidence 999986 5555
No 89
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=82.54 E-value=1.8 Score=43.05 Aligned_cols=59 Identities=27% Similarity=0.321 Sum_probs=34.1
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020961 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 293 (319)
.+|+...|.||...+-.. .++.-... .|. .| ..+.+ .++.++ +| +|||||. +|
T Consensus 296 p~d~~~~G~D~~~~h~~~-~l~~~~~~-~g~---------------~p~~~v~~h---g~v~~~-~g-~KMSKS~---Gn 350 (382)
T cd00817 296 PTSLLVTGHDIIFFWVAR-MIMRGLKL-TGK---------------LPFKEVYLH---GLVRDE-DG-RKMSKSL---GN 350 (382)
T ss_pred CCCeeeeecCcCchHHHH-HHHHHHHh-hCC---------------CchHHeEee---eeEECC-CC-CCccccC---CC
Confidence 479999999997554433 33332211 121 13 22332 345444 55 7999998 78
Q ss_pred eeecCC
Q 020961 294 RINLLD 299 (319)
Q Consensus 294 ~I~L~D 299 (319)
.|.+.|
T Consensus 351 ~v~~~d 356 (382)
T cd00817 351 VIDPLD 356 (382)
T ss_pred CCCHHH
Confidence 887644
No 90
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=81.81 E-value=1.1 Score=47.27 Aligned_cols=60 Identities=32% Similarity=0.369 Sum_probs=31.1
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCe
Q 020961 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (319)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 294 (319)
+-+|+..-|.||....- .+-+..... .++.. +| +..+.+ .++... +| +|||||. +|.
T Consensus 513 ~P~D~~~~G~D~~~~W~-~~~l~~~~~-l~~~~-----------pf--k~v~~h---G~vld~-~G-~KMSKS~---GNv 569 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWF-QSSLFLSVA-LFGKE-----------PF--KKVITH---GFVLDE-DG-RKMSKSK---GNV 569 (601)
T ss_dssp SSBSEEEEEGGGTTTHH-HHHHHHHHH-HSSST-----------SB--SEEEEE-----EEET-TS-SB-BTTT---TB-
T ss_pred CCcccccCCccchhhHH-HHhHhhccc-cccCC-----------ch--heeeec---cccccc-ce-eecccCC---Ccc
Confidence 56899999999976542 222222211 12221 12 334444 445554 56 8999998 677
Q ss_pred eec
Q 020961 295 INL 297 (319)
Q Consensus 295 I~L 297 (319)
|..
T Consensus 570 i~p 572 (601)
T PF00133_consen 570 IDP 572 (601)
T ss_dssp -BH
T ss_pred cCH
Confidence 754
No 91
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=81.68 E-value=1.1 Score=44.92 Aligned_cols=70 Identities=26% Similarity=0.221 Sum_probs=42.9
Q ss_pred hHHHhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 020961 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (319)
Q Consensus 205 P~LQAADIl~~~adivpvG~DQ~-~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~K 283 (319)
..-|+..+|--.-|+--+|.|-. +|+| .++|...- .+|+.. -+..+++. . +... +| +|
T Consensus 203 Csam~~~~lg~~~DIH~GG~DL~FPHHe--neiaq~~a-~~g~~~-------------~~~~w~H~--g-~l~~-~G-~K 261 (384)
T PRK12418 203 CSAIALNRLGSGFDIQGGGSDLIFPHHE--FSAAHAEA-ATGERR-------------FARHYVHA--G-MIGL-DG-EK 261 (384)
T ss_pred HHHHHHHHcCCCcccccCccccccchhH--hHHHHHHH-hcCCCC-------------cceEEEEC--C-EECC-CC-Cc
Confidence 46677777777799999999965 5665 44444422 133211 13344432 2 2233 56 79
Q ss_pred CCCCCCCCCCeeecC
Q 020961 284 MSKSAPSDQSRINLL 298 (319)
Q Consensus 284 MSKS~p~~~s~I~L~ 298 (319)
||||. +|.|.+.
T Consensus 262 MSKSl---GN~i~~~ 273 (384)
T PRK12418 262 MSKSR---GNLVFVS 273 (384)
T ss_pred ccCcC---CCcCCHH
Confidence 99998 6777764
No 92
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=81.53 E-value=1.1 Score=50.45 Aligned_cols=60 Identities=25% Similarity=0.404 Sum_probs=38.0
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-c-cccCCCCcccccCCCCCCcCCCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (319)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P-~-~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 292 (319)
+-+|+...|.||. ++=++|-++..+... | ..| . .+.+ .++..- +| +|||||. +
T Consensus 490 ~P~d~~~~G~Dii-~~W~a~~l~~~~~~~-~---------------~~Pfk~V~~h---G~v~d~-~G-~KMSKSk---G 544 (1052)
T PRK14900 490 YPTSVMETGHDII-FFWVARMMMMGLHFM-G---------------EVPFRTVYLH---PMVRDE-KG-QKMSKTK---G 544 (1052)
T ss_pred CCchhhcccccHH-hHHHHHHHHHHHHhc-C---------------CCccceeEec---ccEECC-CC-CCccCCC---C
Confidence 4579999999998 456667777665432 1 124 3 3333 344442 56 8999998 6
Q ss_pred CeeecCC
Q 020961 293 SRINLLD 299 (319)
Q Consensus 293 s~I~L~D 299 (319)
|.|...|
T Consensus 545 NvIdP~d 551 (1052)
T PRK14900 545 NVIDPLV 551 (1052)
T ss_pred CCCCHHH
Confidence 8876543
No 93
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=80.03 E-value=1.5 Score=48.09 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=11.7
Q ss_pred cCCCEEEecCcchH
Q 020961 215 YQSDFVPVGEDQKQ 228 (319)
Q Consensus 215 ~~adivpvG~DQ~~ 228 (319)
+-+|+...|.||..
T Consensus 563 ~P~d~~i~G~Di~r 576 (861)
T TIGR00392 563 FPADFILEGSDQTR 576 (861)
T ss_pred CCceEEEEecchhc
Confidence 45799999999965
No 94
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=79.82 E-value=1.3 Score=48.96 Aligned_cols=57 Identities=32% Similarity=0.409 Sum_probs=33.1
Q ss_pred cCCCEEEecCcchH-HHHHHHHHHHHhhhh--hCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (319)
Q Consensus 215 ~~adivpvG~DQ~~-hieLaRdiA~r~n~~--yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 291 (319)
+-+|+...|.||.. |+-... |++. ++. -+.|..++.. .++.. +| +|||||.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~-----~~~~a~~~~-------------~~~Pk~v~~h--G~vl~--~G-~KMSKS~--- 582 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFI-----FNHVAIFPE-------------EKWPRGIVVN--GFVLL--EG-KKMSKSK--- 582 (897)
T ss_pred CCceEEEeeeccCccHHHHHH-----HHHHHhcCC-------------CccCcEEEEc--ceEEE--CC-ccccCcC---
Confidence 45799999999966 555442 2221 121 1235444431 33432 56 8999998
Q ss_pred CCeeec
Q 020961 292 QSRINL 297 (319)
Q Consensus 292 ~s~I~L 297 (319)
+|.|..
T Consensus 583 GNvVdp 588 (897)
T PRK12300 583 GNVIPL 588 (897)
T ss_pred CCCCCH
Confidence 677754
No 95
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=79.51 E-value=2.5 Score=47.20 Aligned_cols=45 Identities=31% Similarity=0.326 Sum_probs=30.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
++.|.+|. -|||.+|+||.+..+.+ +.+++. |+++.+.. .|-|.+
T Consensus 61 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 111 (995)
T PTZ00419 61 KFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111 (995)
T ss_pred eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence 45666666 57899999999876522 445554 88886655 566655
No 96
>PLN02843 isoleucyl-tRNA synthetase
Probab=79.35 E-value=3.2 Score=46.37 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=45.1
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC--------------CCCHHHHHHHHHH
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL--------------PYDTQQLSKATRE 137 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~t~--------------~~~~~~l~~~~~~ 137 (319)
++.+..|. -++|.+||||.+..+.+ +++++. |+++.+.. -|-|.+-. ..+++++++.+++
T Consensus 33 ~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~ 112 (974)
T PLN02843 33 SFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAK 112 (974)
T ss_pred CEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHH
Confidence 45666665 56899999999886633 444443 78876544 45554321 1144555444433
Q ss_pred --------HHHHHHHcCC--CCCCc
Q 020961 138 --------TAAIYLACGI--DNSKA 152 (319)
Q Consensus 138 --------~~~~~lA~Gl--Dp~k~ 152 (319)
..+++..+|+ |.++.
T Consensus 113 ~~~~~~~~~~~~~~~lG~~~Dw~~~ 137 (974)
T PLN02843 113 FAKKTVDTQRESFKRYGVWGDWENP 137 (974)
T ss_pred HHHHHHHHHHHHHHHhCCceecCCC
Confidence 3456778898 87763
No 97
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=78.89 E-value=1.4 Score=48.52 Aligned_cols=60 Identities=28% Similarity=0.376 Sum_probs=37.3
Q ss_pred ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCCcCCCCCCCC
Q 020961 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (319)
Q Consensus 214 ~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 291 (319)
.+-+|+...|.||... =++|-++..+... | ..| ..+.+ .++-.. +| +|||||.
T Consensus 471 ~~P~d~~~~G~Dii~~-W~a~~~~~~~~~~-~---------------~~Pfk~v~~h---G~v~d~-~G-~KMSKSl--- 525 (874)
T PRK05729 471 FYPTSVLVTGFDIIFF-WVARMIMMGLHFT-G---------------QVPFKDVYIH---GLVRDE-QG-RKMSKSK--- 525 (874)
T ss_pred cCCcccccccccccch-HHHHHHHHHHHhc-C---------------CCchhheEEe---eeEECC-CC-CCcccCC---
Confidence 3567999999999874 5566665554321 1 135 23333 345444 56 7999998
Q ss_pred CCeeecC
Q 020961 292 QSRINLL 298 (319)
Q Consensus 292 ~s~I~L~ 298 (319)
+|.|...
T Consensus 526 GNvIdP~ 532 (874)
T PRK05729 526 GNVIDPL 532 (874)
T ss_pred CCCCCHH
Confidence 6777653
No 98
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=78.03 E-value=1.5 Score=42.21 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=33.7
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020961 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 295 (319)
..++..+|.|+..++.+.- .|--+. .| ++.|..++.. ..+ .+ +| +|||||. ++.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~-pa~l~~--~~--------------~~~~~~~~~~--~~~-~~-~g-~kmSkS~---gn~i 289 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYW-PAMLLG--AG--------------LPLPTRIVAH--GYL-TV-EG-KKMSKSR---GNVV 289 (319)
T ss_pred CceEEEEeechhhhhHHHH-HHHHHh--CC--------------CCCCcEeeee--eeE-EE-CC-eeecccC---Cccc
Confidence 3578999999998754321 111111 11 2235444431 223 33 56 7999998 6888
Q ss_pred ecCC
Q 020961 296 NLLD 299 (319)
Q Consensus 296 ~L~D 299 (319)
.+.|
T Consensus 290 ~~~~ 293 (319)
T cd00814 290 DPDD 293 (319)
T ss_pred CHHH
Confidence 8754
No 99
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=77.12 E-value=5.9 Score=43.57 Aligned_cols=45 Identities=24% Similarity=0.244 Sum_probs=30.2
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilIa-DlhA~ 122 (319)
++.|++|. -+||.+|+||.+..+.+ +.+++. |+++.+..+ |-|.+
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 84 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGI 84 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCC
Confidence 46777765 57899999999875522 444444 788877555 55544
No 100
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=76.12 E-value=1.9 Score=47.93 Aligned_cols=61 Identities=28% Similarity=0.411 Sum_probs=34.1
Q ss_pred cCCCEEEecCcchH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 215 ~~adivpvG~DQ~~-hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 293 (319)
|-+|+...|.||.+ |+... ++...- .++.. +.|..++.. ..+.. +| +|||||. +|
T Consensus 572 yP~D~~~~GkDii~~H~~~~--i~~~~a-~~~~~-------------~~Pk~i~~~--G~vl~--~G-~KMSKSl---GN 627 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFY--IFHHVA-IFPEK-------------FWPRGIVVN--GYVML--EG-KKMSKSK---GN 627 (938)
T ss_pred CCceEEEEeeccccchHHHH--HHHHHH-cCCcc-------------ccCcEEEEe--ceEEe--CC-ccccCcC---CC
Confidence 45799999999976 55544 222211 11111 124443321 23332 56 8999998 68
Q ss_pred eeecCC
Q 020961 294 RINLLD 299 (319)
Q Consensus 294 ~I~L~D 299 (319)
.|.+.|
T Consensus 628 vI~p~d 633 (938)
T TIGR00395 628 VLTLEQ 633 (938)
T ss_pred CCCHHH
Confidence 886543
No 101
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=76.07 E-value=3.7 Score=44.68 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=41.8
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-ccceec---------C--CC--CHH--------H
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAIT---------L--PY--DTQ--------Q 130 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilIa-DlhA~t---------~--~~--~~~--------~ 130 (319)
++.+.+|. -|+|.+||||.++.+.+ +.+++. |+++.+..+ |-|.+- + +. +.+ -
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 45666643 67899999999876522 444443 888877554 555431 1 11 111 2
Q ss_pred HHHHHHHHHHHHHHcCC
Q 020961 131 LSKATRETAAIYLACGI 147 (319)
Q Consensus 131 l~~~~~~~~~~~lA~Gl 147 (319)
..++...+.+++.++|+
T Consensus 119 ~~~~~~~~~~~~~~lg~ 135 (800)
T PRK13208 119 TDEDEKKFRELWRRLGL 135 (800)
T ss_pred HHHHHHHHHHHHHHhCe
Confidence 23345567778888887
No 102
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=76.02 E-value=1.9 Score=43.73 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=43.1
Q ss_pred CCceEE-EeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccce--ecC-----CCCHHHH-HHHHHHHHHHH
Q 020961 77 VKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHA--ITL-----PYDTQQL-SKATRETAAIY 142 (319)
Q Consensus 77 ~~~~i~-tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~ilI-aDlhA--~t~-----~~~~~~l-~~~~~~~~~~~ 142 (319)
...++| +|-=|=+.+||||..+.+ .-++++++ |++|.++. .|.|. ++. ..+++++ ++++..+.+++
T Consensus 35 ~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~ 114 (411)
T TIGR03447 35 PEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDM 114 (411)
T ss_pred CcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344444 455555889999987755 33444444 78887654 33332 111 2355444 55667888888
Q ss_pred HHcCCC
Q 020961 143 LACGID 148 (319)
Q Consensus 143 lA~GlD 148 (319)
.++|+.
T Consensus 115 ~~Lni~ 120 (411)
T TIGR03447 115 EALRVL 120 (411)
T ss_pred HHcCCC
Confidence 899864
No 103
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.86 E-value=1.9 Score=44.23 Aligned_cols=72 Identities=26% Similarity=0.188 Sum_probs=46.8
Q ss_pred chHHHhhhhhccCCCEEEecCc-chHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCC
Q 020961 204 YPVLMASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLS 282 (319)
Q Consensus 204 YP~LQAADIl~~~adivpvG~D-Q~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~ 282 (319)
=...|+.+.|--.-||--||.| +-||+| .|+|+.--. +|.+.|- -.-+++ .+|+ . +| +
T Consensus 209 ECSaM~~~~LG~~~DIHgGG~DLiFPHHE--NEiAQsea~-~g~~~~a------------~yWmH~---G~l~-i-~g-e 267 (464)
T COG0215 209 ECSAMSTKYLGETFDIHGGGSDLIFPHHE--NEIAQSEAA-TGVKPFA------------KYWMHN---GFLN-I-DG-E 267 (464)
T ss_pred HHHHHHHHHhCCCcceecCcccccCCCcc--cHHHHHHhh-hCCCcce------------eEeEEc---ceee-e-cC-c
Confidence 3467889999889999999999 568988 466655432 2322110 012333 2332 2 56 8
Q ss_pred cCCCCCCCCCCeeecCC
Q 020961 283 KMSKSAPSDQSRINLLD 299 (319)
Q Consensus 283 KMSKS~p~~~s~I~L~D 299 (319)
|||||. +|-|.+.|
T Consensus 268 KMSKSL---GNfiti~d 281 (464)
T COG0215 268 KMSKSL---GNFITVRD 281 (464)
T ss_pred Cccccc---CCeeEHHH
Confidence 999998 78888765
No 104
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=75.42 E-value=2.7 Score=45.73 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=33.2
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 293 (319)
+-+|+...|.||... -+.+-++...-. +|. .| ..++. + .++... +| +|||||. +|
T Consensus 485 ~P~d~~~~G~Di~~~-w~~~~l~~~~~~-~~~---------------~Pf~~v~~-h-g~v~~~-~G-~KMSKS~---GN 540 (800)
T PRK13208 485 FPMDLRPQGHDIIRT-WLFYTILRAYLL-TGK---------------LPWKNIMI-S-GMVLDP-DG-KKMSKSK---GN 540 (800)
T ss_pred CCceEEEeecchhhh-HHHHHHHHHHHh-cCC---------------CCcceEEE-e-eEEECC-CC-CCCCCCC---CC
Confidence 358999999999853 233334333221 222 13 22222 1 344443 56 7999998 67
Q ss_pred eeecC
Q 020961 294 RINLL 298 (319)
Q Consensus 294 ~I~L~ 298 (319)
.|.+.
T Consensus 541 ~i~p~ 545 (800)
T PRK13208 541 VVTPE 545 (800)
T ss_pred CCCHH
Confidence 77653
No 105
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=74.27 E-value=3.6 Score=43.45 Aligned_cols=69 Identities=23% Similarity=0.230 Sum_probs=47.4
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020961 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 217 adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 295 (319)
--|--+|.||..|+...+-+++..+... + ..+++-. -.++..-+| .||||-. ++.|
T Consensus 336 ~~IyV~gadq~~~~~ql~~~l~~~g~~~------------------~~~~~~h~~-~~l~~~~~g-~kmStR~---G~~v 392 (577)
T COG0018 336 KLIYVLGADQHGHFKQLKAVLELLGYGP------------------DKEVLLHQG-VGLVRGGEG-VKMSTRA---GNVV 392 (577)
T ss_pred EEEEEeCCcchhHHHHHHHHHHHhcCCC------------------ccceEEEEE-EeeeECCCC-ccccccC---CceE
Confidence 3456799999999999999999988431 2 2222211 223333233 6899997 7999
Q ss_pred ecCCCHHHHHHhh
Q 020961 296 NLLDPKDVSHKFF 308 (319)
Q Consensus 296 ~L~Dspe~I~kKI 308 (319)
.|.|=-|++.+|-
T Consensus 393 tl~dllde~~era 405 (577)
T COG0018 393 TLDDLLDEAGERA 405 (577)
T ss_pred EHHHHHHHHHHHh
Confidence 9998888877554
No 106
>PLN02286 arginine-tRNA ligase
Probab=74.21 E-value=4.1 Score=42.92 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=43.8
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020961 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 217 adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 296 (319)
--|--+|.||..|+.-...+++.++.... .. -..-+++.. .+|-++ +| +||||.. ++.|.
T Consensus 329 ~~IyVvg~~q~~hf~~v~~~l~~lG~~~~-~~-----------~~~l~h~~~---g~V~~~-~g-~kmStR~---G~~v~ 388 (576)
T PLN02286 329 WIIYVTDVGQQQHFDMVFKAAKRAGWLPE-DT-----------YPRLEHVGF---GLVLGE-DG-KRFRTRS---GEVVR 388 (576)
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHcCCCcc-cc-----------CCceEEEee---ccEECC-CC-CcccCCC---CCeeE
Confidence 34566899999999999999999984200 00 001122322 456344 55 6999886 78999
Q ss_pred cCCCHHHH
Q 020961 297 LLDPKDVS 304 (319)
Q Consensus 297 L~Dspe~I 304 (319)
|.|=-+++
T Consensus 389 L~dlldea 396 (576)
T PLN02286 389 LVDLLDEA 396 (576)
T ss_pred HHHHHHHH
Confidence 97754443
No 107
>PLN02943 aminoacyl-tRNA ligase
Probab=73.91 E-value=2.8 Score=46.72 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=36.2
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCCcCCCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (319)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 292 (319)
|-+|+...|.||. .+=++|-++--... .| +.| ..+++ ..+... +| +|||||. +
T Consensus 535 yP~dl~~~G~Dii-~fW~a~m~~~~~~~-~~---------------~~Pf~~v~~h---g~v~~~-~G-~KMSKS~---G 589 (958)
T PLN02943 535 YPTTVLETGHDIL-FFWVARMVMMGIEF-TG---------------TVPFSYVYLH---GLIRDS-QG-RKMSKTL---G 589 (958)
T ss_pred CCCeEEEEeehHH-HHHHHHHHHhhhhh-cC---------------CCChheEEEe---ccEECC-CC-CcccCcC---C
Confidence 4579999999998 45667766633221 12 124 23333 334343 56 8999998 6
Q ss_pred CeeecC
Q 020961 293 SRINLL 298 (319)
Q Consensus 293 s~I~L~ 298 (319)
|.|...
T Consensus 590 N~i~p~ 595 (958)
T PLN02943 590 NVIDPL 595 (958)
T ss_pred CCCCHH
Confidence 787654
No 108
>PLN02959 aminoacyl-tRNA ligase
Probab=72.97 E-value=3 Score=47.10 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=34.4
Q ss_pred ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020961 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 214 ~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 293 (319)
.|=+|+...|.||...+- ..-+..... .+|.. +-|..++.. ..|. + +| +|||||. +|
T Consensus 669 ~yP~Dl~~sG~Dii~~wl-~~~l~~~~a-l~~~~-------------P~p~~v~v~--G~V~-~-~G-~KMSKSk---GN 725 (1084)
T PLN02959 669 WYPFDLRVSGKDLIQNHL-TFAIYNHTA-IWAEE-------------HWPRGFRCN--GHLM-L-NS-EKMSKST---GN 725 (1084)
T ss_pred hCCCeEEEecccHHHHHH-HHHHHHHHH-hcCCC-------------CCCceEEEc--cEEe-c-CC-cCccccC---CC
Confidence 356899999999977653 333322211 12221 124333221 2333 3 67 8999998 67
Q ss_pred eeecC
Q 020961 294 RINLL 298 (319)
Q Consensus 294 ~I~L~ 298 (319)
.|.+.
T Consensus 726 vI~p~ 730 (1084)
T PLN02959 726 FLTLR 730 (1084)
T ss_pred cCCHH
Confidence 77653
No 109
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=72.61 E-value=3 Score=45.84 Aligned_cols=59 Identities=32% Similarity=0.402 Sum_probs=35.2
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCCcCCCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (319)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 292 (319)
+-+|+...|.||...+ ++|-++-.... .| +.| ..+.+ .++... +| +|||||. +
T Consensus 477 ~P~d~~~~G~Dii~fw-~~~~~~~~~~~-~~---------------~~Pfk~v~~h---G~v~d~-~G-~KMSKS~---G 531 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFW-VARMIFRSLAL-TG---------------QVPFKEVYIH---GLVRDE-QG-RKMSKSL---G 531 (861)
T ss_pred CCcceeecchhhhhHH-HHHHHHHHHHh-cC---------------CCchheEEEe---eEEECC-CC-CCCCcCC---C
Confidence 5689999999997664 34445433221 12 124 23333 345443 56 7999998 6
Q ss_pred CeeecC
Q 020961 293 SRINLL 298 (319)
Q Consensus 293 s~I~L~ 298 (319)
|.|.+.
T Consensus 532 N~i~p~ 537 (861)
T TIGR00422 532 NVIDPL 537 (861)
T ss_pred CCCCHH
Confidence 777653
No 110
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=72.01 E-value=2.7 Score=46.88 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.0
Q ss_pred hccCCCEEEecCcchH
Q 020961 213 LLYQSDFVPVGEDQKQ 228 (319)
Q Consensus 213 l~~~adivpvG~DQ~~ 228 (319)
+.+-+|+...|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 3456899999999974
No 111
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=71.20 E-value=4.3 Score=45.42 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=37.2
Q ss_pred ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCCcCCCCCCCC
Q 020961 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (319)
Q Consensus 214 ~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 291 (319)
.|-+|+...|.||.. +=.+|-++..+... | ..| ..+++ .++-+- +| +|||||.
T Consensus 536 ~~P~d~~~~G~Dii~-~W~arm~~~~~~~~-~---------------~~Pfk~v~~H---G~v~d~-~G-~KMSKSl--- 590 (995)
T PTZ00419 536 FFPTSLLETGSDILF-FWVARMVMMSLHLT-D---------------KLPFKTVFLH---AMVRDS-QG-EKMSKSK--- 590 (995)
T ss_pred cCCCcEEEechhHHh-HHHHHHHHHHHHhc-C---------------CCChHHHhcc---ceEECC-CC-CCcccCC---
Confidence 356899999999876 55666666555321 1 135 23333 445553 56 7999998
Q ss_pred CCeeec
Q 020961 292 QSRINL 297 (319)
Q Consensus 292 ~s~I~L 297 (319)
+|.|..
T Consensus 591 GNvIdP 596 (995)
T PTZ00419 591 GNVIDP 596 (995)
T ss_pred CCcCCh
Confidence 677743
No 112
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=71.07 E-value=4.1 Score=43.02 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=30.5
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccceec
Q 020961 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHAIT 123 (319)
Q Consensus 82 ~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~--~ilIaDlhA~t 123 (319)
|+.--|||+||+||...++ .-+.++-+ ||+| .+.|.||=..+
T Consensus 123 ~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~ 170 (577)
T COG0018 123 YSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQI 170 (577)
T ss_pred EeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHH
Confidence 7888999999999997766 33333333 7876 56889985544
No 113
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=71.07 E-value=2.3 Score=45.09 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=32.5
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020961 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 295 (319)
.+|+.+.|.||..++-+-= .-+-.-.| ++.|..++.. ..+. + +| +|||||. +|.|
T Consensus 254 p~~~~~~GkDii~fH~i~w---pa~l~~~~--------------~~~p~~v~~h--g~l~-~-eg-~KMSKS~---GN~i 308 (648)
T PRK12267 254 PADVHLVGKDILRFHAIYW---PIMLMALG--------------LPLPKKVFAH--GWWL-M-KD-GKMSKSK---GNVV 308 (648)
T ss_pred ccceEEEeeeecchhHHHH---HHHHHhCC--------------CCCCcEEEec--ceEE-E-CC-ceecccC---Cccc
Confidence 4689999999987443210 01110011 3446655532 2332 2 55 8999998 6888
Q ss_pred ecC
Q 020961 296 NLL 298 (319)
Q Consensus 296 ~L~ 298 (319)
...
T Consensus 309 ~p~ 311 (648)
T PRK12267 309 DPE 311 (648)
T ss_pred CHH
Confidence 654
No 114
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=70.96 E-value=3.4 Score=40.21 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=38.3
Q ss_pred CCCceEEE-eeCCCCcchhhhHHHHH-----HHHHHHhccCcEEE--EEeccceecC------CCCHHH-HHHHHHHHHH
Q 020961 76 SVKKRIVS-GVQPTGSIHLGNYLGAI-----KNWIALQNSYETLF--FIVDLHAITL------PYDTQQ-LSKATRETAA 140 (319)
Q Consensus 76 ~~~~~i~t-Gi~PTG~lHLGhylg~l-----~~~~~lQ~g~~~~i--lIaDlhA~t~------~~~~~~-l~~~~~~~~~ 140 (319)
+..+++|+ |--+=...||||+...+ +++++. .|+++.+ =|+|+.--+. ..++.+ .+..+.++.+
T Consensus 6 ~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~-~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 6 PGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEY-LGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp TTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHH-cCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 34555554 44444779999987654 333222 2777644 5677743332 124444 4556778888
Q ss_pred HHHHcCCCCC
Q 020961 141 IYLACGIDNS 150 (319)
Q Consensus 141 ~~lA~GlDp~ 150 (319)
++.++|+.+-
T Consensus 85 dm~~Lnv~~p 94 (300)
T PF01406_consen 85 DMKALNVLPP 94 (300)
T ss_dssp HHHHTT----
T ss_pred HHHHcCCCCC
Confidence 8889998763
No 115
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.86 E-value=7.1 Score=41.42 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=56.1
Q ss_pred ceEEEee--CCCCcchhhhHHHHHHHHHHHhcc-CcEEEEEeccceecCCCCHHH-HHHHHHHHHHHHHHcCCCCCCcEE
Q 020961 79 KRIVSGV--QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQ-LSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 79 ~~i~tGi--~PTG~lHLGhylg~l~~~~~lQ~g-~~~~ilIaDlhA~t~~~~~~~-l~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
-.|+|-| +|-|.+||||.--...++= +-+. ..+.++-=|. | +|+. -.+.-..+.++..++|++|-|+
T Consensus 247 GkV~TRFPPEPNG~LHIGHaKAInvNFg-yAk~~~G~cyLRfDD---T---NPEkEee~yf~sI~e~V~WLG~~P~kv-- 317 (764)
T KOG1148|consen 247 GKVVTRFPPEPNGILHIGHAKAINVNFG-YAKAHGGVCYLRFDD---T---NPEKEEEEYFESIKEMVAWLGFEPYKV-- 317 (764)
T ss_pred CeeEEeCCCCCCceeeecchhheeechh-hhhhhCCeEEEecCC---C---CcchhhHHHHHHHHHHHHHhCCCceee--
Confidence 3678888 6679999999853223331 1221 2244444444 2 3432 2334444555556789999764
Q ss_pred EEcccch-hhhHHHHH-------HhccCCHHHHhchhcHH
Q 020961 155 FVQSHVR-AHVELMWL-------LSSATPIGWLNKMIQFK 186 (319)
Q Consensus 155 f~QSd~~-~~~el~w~-------L~~~~s~~rL~R~~~~k 186 (319)
-..||+. +..+++.. +.|+.+..++++.-.++
T Consensus 318 TysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~ 357 (764)
T KOG1148|consen 318 TYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFN 357 (764)
T ss_pred ecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCC
Confidence 4668764 33444443 34888888888444433
No 116
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=70.40 E-value=5.7 Score=43.77 Aligned_cols=45 Identities=31% Similarity=0.425 Sum_probs=28.9
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
++.+.+|. -+||.+|+||.+....+ +.+++. |+++.+.- .|-|.+
T Consensus 37 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi 87 (874)
T PRK05729 37 PFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGI 87 (874)
T ss_pred CEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccch
Confidence 35555554 56899999999876522 444444 78886654 455554
No 117
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=69.76 E-value=5.4 Score=39.25 Aligned_cols=71 Identities=27% Similarity=0.169 Sum_probs=42.1
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020961 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 217 adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 296 (319)
.-|-.+|.||..|+.-...+++.++..-.. ....+-.. .++ -+.||..|||+.. ++.|.
T Consensus 240 ~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~----------------~~~~H~~~-g~v-l~~~gk~~mstR~---G~~i~ 298 (354)
T PF00750_consen 240 KIIYVVGADQKGHFKQLFAILEALGYDPEA----------------VKLQHVSF-GVV-LLKDGKVKMSTRK---GNVIT 298 (354)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTT-HHHH----------------CTEEEEEE--EE-EETTBEESS-TTT---TSSTB
T ss_pred cEEEEecCchhhHHHHHHHHHHHhCCCCCC----------------CEEEEEEE-EEE-EcCCCCccccCCC---CCceE
Confidence 445779999999999999999999842000 11111111 122 2235623899997 78998
Q ss_pred cCCCHHHHHHhh
Q 020961 297 LLDPKDVSHKFF 308 (319)
Q Consensus 297 L~Dspe~I~kKI 308 (319)
|.|==++..++.
T Consensus 299 l~dllde~~~~a 310 (354)
T PF00750_consen 299 LDDLLDEAVERA 310 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 866444444443
No 118
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=68.77 E-value=6.6 Score=42.31 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=47.9
Q ss_pred CCCceEEEee-CCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccceecCCC---------CH-HHHHHHHHHHHH
Q 020961 76 SVKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAITLPY---------DT-QQLSKATRETAA 140 (319)
Q Consensus 76 ~~~~~i~tGi-~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~ilIaDlhA~t~~~---------~~-~~l~~~~~~~~~ 140 (319)
.++.+|++=| -|||.+|+||..+-. .-..++|+ |++|+=-+ .|.|+=.|. +| .-..+|+..+.+
T Consensus 56 sk~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPM-GWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~ 134 (876)
T KOG0435|consen 56 SKKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPM-GWDAFGLPAENAAIERGVHPASWTINNIAKMKQ 134 (876)
T ss_pred CCCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCC-cccccCCchhhHHHhcCCCchhhhHHHHHHHHH
Confidence 3455899888 799999999964311 33445555 77775544 355553331 22 345667778888
Q ss_pred HHHHcCC--CCCC
Q 020961 141 IYLACGI--DNSK 151 (319)
Q Consensus 141 ~~lA~Gl--Dp~k 151 (319)
++..+|+ |.|+
T Consensus 135 Ql~~lg~~FDWdr 147 (876)
T KOG0435|consen 135 QLKSLGISFDWDR 147 (876)
T ss_pred HHHHcCccccccc
Confidence 8888875 6655
No 119
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=67.81 E-value=5.2 Score=41.88 Aligned_cols=42 Identities=21% Similarity=0.479 Sum_probs=30.1
Q ss_pred eEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccce
Q 020961 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHA 121 (319)
Q Consensus 80 ~i~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~--~ilIaDlhA 121 (319)
.-|++--|+|++|+||..+++ .-+.++.+ |++| .+.|.||=.
T Consensus 116 ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~ 163 (566)
T TIGR00456 116 IEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGR 163 (566)
T ss_pred EEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHH
Confidence 447888999999999998766 33444444 6776 568888743
No 120
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.08 E-value=3.6 Score=45.37 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=27.1
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccceec
Q 020961 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAIT 123 (319)
Q Consensus 87 PTG~lHLGhylg~l--~~~~~lQ~--g~~~~ilIaDlhA~t 123 (319)
+||.+|+||.+... .-.+++++ |+++.++-+=.||=+
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGI 84 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGI 84 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCc
Confidence 59999999986533 33445554 899999888777754
No 121
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=66.09 E-value=4.2 Score=42.17 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=31.4
Q ss_pred CEEEecCcchHHHH-HHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020961 218 DFVPVGEDQKQHLE-LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 218 divpvG~DQ~~hie-LaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 296 (319)
++...|.|+...+. +---+..-.+. .++.|..++.. ..+. + +| +|||||. +|.|.
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~~----------------~~~~P~~v~~~--G~v~-~-~G-~KMSKS~---GN~I~ 344 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSGE----------------PLKLPDEIVSS--EYLT-L-EG-GKFSKSR---GWGIW 344 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcCC----------------CCCCCCEeecc--CCEE-E-CC-eeeccCC---CcccC
Confidence 48888999976443 22222222221 13456555542 3342 3 66 7999998 67775
Q ss_pred c
Q 020961 297 L 297 (319)
Q Consensus 297 L 297 (319)
.
T Consensus 345 p 345 (556)
T PRK12268 345 V 345 (556)
T ss_pred H
Confidence 4
No 122
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=65.85 E-value=19 Score=32.27 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=36.8
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccce-ec--CCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccc
Q 020961 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (319)
Q Consensus 85 i~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA-~t--~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~ 160 (319)
|+| +|+||.-. +.... +..-+++|.|+.-.. .+ ++.+.++-.+.++.. +...|+|.+++.|.-=.|.
T Consensus 8 F~P---~H~GHl~~-i~~a~--~~~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~---~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 8 FQP---FHNGHLAV-VLIAL--EKAKKVIILIGSARTARNIKNPWTSEEREVMIEAA---LSDAGADLARVHFRPLRDH 77 (181)
T ss_pred cCC---CCHHHHHH-HHHHH--HHCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHH---HhccCCCcceEEEEecCCC
Confidence 466 89999864 33432 232267776755422 12 233444444444333 3345899988777654454
No 123
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=64.91 E-value=4.4 Score=45.25 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.4
Q ss_pred ccCCCEEEecCcchH
Q 020961 214 LYQSDFVPVGEDQKQ 228 (319)
Q Consensus 214 ~~~adivpvG~DQ~~ 228 (319)
.+-+|+...|.||..
T Consensus 543 ~~Pad~~~~G~Di~r 557 (975)
T PRK06039 543 HFPADFIVEGIDQTR 557 (975)
T ss_pred cCCceEEEechhhHh
Confidence 346899999999975
No 124
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=64.55 E-value=7.7 Score=40.71 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=42.4
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020961 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 217 adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 296 (319)
--|-.+|.||..|+.-...+++.+++.-.. .-+++.. .+| .+ +| +||||.. ++.|.
T Consensus 326 ~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~---------------~l~h~~~---g~V-~~-~g-~kmStR~---G~~v~ 381 (562)
T PRK12451 326 KALYVVGPEQSLHFNQFFTVLKKLGYTWVD---------------GMEHVPF---GLI-LK-DG-KKMSTRK---GRVVL 381 (562)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHcCCCccc---------------CeEEEee---eeE-ec-CC-CCCcCCC---CCeeE
Confidence 446789999999999999999999842100 0112221 234 34 55 5999997 78999
Q ss_pred cCCCHHH
Q 020961 297 LLDPKDV 303 (319)
Q Consensus 297 L~Dspe~ 303 (319)
|.|==++
T Consensus 382 l~dLlde 388 (562)
T PRK12451 382 LEEVLEE 388 (562)
T ss_pred HHHHHHH
Confidence 8774444
No 125
>PLN02843 isoleucyl-tRNA synthetase
Probab=64.54 E-value=4.4 Score=45.36 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.5
Q ss_pred hccCCCEEEecCcchH
Q 020961 213 LLYQSDFVPVGEDQKQ 228 (319)
Q Consensus 213 l~~~adivpvG~DQ~~ 228 (319)
+.+-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 4566999999999986
No 126
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=64.29 E-value=16 Score=37.85 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=43.3
Q ss_pred CceEEEeeCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc-----------ceecC-----CCCH-HHHH
Q 020961 78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL-----------HAITL-----PYDT-QQLS 132 (319)
Q Consensus 78 ~~~i~tGi~PT--G~lHLGhylg~l--~~~~~lQ~--g~~~~i--lIaDl-----------hA~t~-----~~~~-~~l~ 132 (319)
.+++|+ ..|| ..+||||..+.+ .-++++.+ |++|.+ =|+|+ -.++. ..++ +-.+
T Consensus 21 ~v~mY~-CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 21 DVKVYA-CGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred ceEEEe-CCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 455554 4666 569999987754 22333332 788866 35666 22222 1244 3345
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 020961 133 KATRETAAIYLACGIDNS 150 (319)
Q Consensus 133 ~~~~~~~~~~lA~GlDp~ 150 (319)
+++..+.+++.++|+.++
T Consensus 100 ~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 567778888999999765
No 127
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=64.24 E-value=6 Score=40.73 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=31.1
Q ss_pred EEEecCcchHHHHHHH-HHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeec
Q 020961 219 FVPVGEDQKQHLELTR-ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (319)
Q Consensus 219 ivpvG~DQ~~hieLaR-diA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 297 (319)
+.+.|.|....+-+-- -+..-.+ ++.|..++.. .++. + +| +|||||. +|.|.+
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~------------------~~~~~~~~~~--g~v~-~-~g-~KmSKS~---Gn~i~~ 338 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLG------------------LPLPTQVFSH--GYLT-V-EG-GKMSKSL---GNVVDP 338 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCC------------------CCCCCEEEee--ccEE-E-CC-ceecccC---CceecH
Confidence 8899999998643321 1121122 2235555432 3342 2 55 8999998 688865
Q ss_pred C
Q 020961 298 L 298 (319)
Q Consensus 298 ~ 298 (319)
.
T Consensus 339 ~ 339 (530)
T TIGR00398 339 S 339 (530)
T ss_pred H
Confidence 4
No 128
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=64.01 E-value=11 Score=39.67 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=28.0
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEE-Eeccceec
Q 020961 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAIT 123 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~il-IaDlhA~t 123 (319)
.++.+..|. -+||.+|+||.+..+.+ +++++. |+++.+. =-|-|.+-
T Consensus 23 ~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glp 75 (601)
T PF00133_consen 23 PKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLP 75 (601)
T ss_dssp GEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHH
T ss_pred CcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcc
Confidence 346666665 67899999999886633 444444 7888664 45776663
No 129
>PLN02381 valyl-tRNA synthetase
Probab=63.97 E-value=6.1 Score=44.69 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=38.3
Q ss_pred ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC--ccccCCCCcccccCCCCCCcCCCCCCCC
Q 020961 214 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (319)
Q Consensus 214 ~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P--~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 291 (319)
.|-+|+..-|-||. ++=++|-+...+.. .|. .| ..+++ .++-+- +| +|||||.
T Consensus 606 ~~P~d~~~~G~Dii-~~W~~rmi~~~~~~-~~~---------------~PFk~v~~h---G~V~D~-~G-~KMSKS~--- 660 (1066)
T PLN02381 606 FYPTSVLETGHDIL-FFWVARMVMMGMQL-GGD---------------VPFRKVYLH---PMIRDA-HG-RKMSKSL--- 660 (1066)
T ss_pred cCCCeeeeecchhh-hhHHHHHHHHHHHh-CCC---------------CchHHheec---ceEECC-CC-CCCCCCC---
Confidence 35699999999998 55667766654431 122 23 23443 456554 56 7999998
Q ss_pred CCeeecC
Q 020961 292 QSRINLL 298 (319)
Q Consensus 292 ~s~I~L~ 298 (319)
+|.|...
T Consensus 661 GNvIdP~ 667 (1066)
T PLN02381 661 GNVIDPL 667 (1066)
T ss_pred CCCCCHH
Confidence 6777543
No 130
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=63.76 E-value=6.3 Score=41.32 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=28.6
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccc
Q 020961 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLH 120 (319)
Q Consensus 82 ~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~--~ilIaDlh 120 (319)
|+.--|+|++|+||...++ .-..++-+ |++| ...|.||=
T Consensus 119 ~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G 163 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWG 163 (562)
T ss_pred ecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCch
Confidence 7888999999999997765 33444433 7776 56888883
No 131
>PLN02563 aminoacyl-tRNA ligase
Probab=62.85 E-value=5.5 Score=44.57 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=22.8
Q ss_pred ccCCCEEEecCcc-hHHHHHHHHHHHHhh
Q 020961 214 LYQSDFVPVGEDQ-KQHLELTRELAERVN 241 (319)
Q Consensus 214 ~~~adivpvG~DQ-~~hieLaRdiA~r~n 241 (319)
.+-+|+..+|.|| .-|+..+|-....+.
T Consensus 614 w~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 614 WMPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred cCCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 3569999999999 578888888876655
No 132
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=62.69 E-value=4.3 Score=43.49 Aligned_cols=71 Identities=30% Similarity=0.392 Sum_probs=44.0
Q ss_pred hHHHhhhhhccCCCEEEecCcc-hHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 020961 205 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (319)
Q Consensus 205 P~LQAADIl~~~adivpvG~DQ-~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~K 283 (319)
...|+.|||-...||--+|.|- -||++ .|+|..--. +|...| ...+++. ..| .+ +| .|
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHe--NEiAQseA~-~~~~~~-------------v~y~~H~--G~L-~i-~G-~K 315 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHD--NELAQSEAY-FDKHQW-------------VNYFLHS--GHL-HI-KG-LK 315 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcch--hHHHHHHHh-hCCCCC-------------CcEEEEE--EEE-Ee-cc-ch
Confidence 4689999999999999999998 46755 344444321 333111 1122221 222 33 56 79
Q ss_pred CCCCCCCCCCeeecCC
Q 020961 284 MSKSAPSDQSRINLLD 299 (319)
Q Consensus 284 MSKS~p~~~s~I~L~D 299 (319)
||||. +|.|.+.|
T Consensus 316 MSKSL---GNfItp~d 328 (651)
T PTZ00399 316 MSKSL---KNFITIRQ 328 (651)
T ss_pred hhhcC---CCcccHHH
Confidence 99998 68887643
No 133
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=62.67 E-value=36 Score=36.92 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=44.8
Q ss_pred CCCCCceEEEeeCCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccce--ecC-----CCCHHHH-HHHHHHH
Q 020961 74 SSSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHA--ITL-----PYDTQQL-SKATRET 138 (319)
Q Consensus 74 ~~~~~~~i~tGi~PT--G~lHLGhylg~l--~~~~~lQ~--g~~~~ilI-aDlhA--~t~-----~~~~~~l-~~~~~~~ 138 (319)
..+...++|+ .+|| +.+||||....+ .-++++.+ |++|.+.. .|.|. ++. ..++.++ +.++..+
T Consensus 244 ~~~~~V~mYv-CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F 322 (699)
T PRK14535 244 IDPENVRMYV-CGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAM 322 (699)
T ss_pred CCCCceEEEe-cCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344556654 4666 779999987754 22333333 78886643 23321 111 1245443 5567788
Q ss_pred HHHHHHcCCCCC
Q 020961 139 AAIYLACGIDNS 150 (319)
Q Consensus 139 ~~~~lA~GlDp~ 150 (319)
.+++.++|+.+.
T Consensus 323 ~~d~~~LnI~~p 334 (699)
T PRK14535 323 HEDADALGVLRP 334 (699)
T ss_pred HHHHHHcCCCCC
Confidence 888999999764
No 134
>PLN02882 aminoacyl-tRNA ligase
Probab=62.25 E-value=7.5 Score=44.37 Aligned_cols=59 Identities=29% Similarity=0.376 Sum_probs=33.9
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCe
Q 020961 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (319)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 294 (319)
+-+|+..-|.||.... +.+-++-... .+|.. .|..++. + .++.. .+| +|||||. +|.
T Consensus 566 ~PaD~i~eG~Dq~RgW-f~~ll~~s~~-l~~~~--------------pfk~Viv-h-G~vld-e~G-~KMSKSl---GNv 622 (1159)
T PLN02882 566 FPADFVAEGLDQTRGW-FYTLMVLSTA-LFDKP--------------AFKNLIC-N-GLVLA-EDG-KKMSKSL---KNY 622 (1159)
T ss_pred CCceEEEEecchhhhH-HHHHHHHHHH-hcCCC--------------CcceeEE-c-cEEEC-CCC-CCcccCC---CCC
Confidence 4499999999998865 4444444332 12321 1333332 1 23322 145 8999998 677
Q ss_pred ee
Q 020961 295 IN 296 (319)
Q Consensus 295 I~ 296 (319)
|.
T Consensus 623 Id 624 (1159)
T PLN02882 623 PD 624 (1159)
T ss_pred CC
Confidence 64
No 135
>PLN02286 arginine-tRNA ligase
Probab=62.24 E-value=5.7 Score=41.85 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=28.6
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccce
Q 020961 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHA 121 (319)
Q Consensus 82 ~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~--~ilIaDlhA 121 (319)
|+.--|||++|+||..+++ .-+.++-+ |++| ...|.||=.
T Consensus 123 fsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~ 168 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGT 168 (576)
T ss_pred ecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHH
Confidence 7888999999999987655 33333333 7776 668888833
No 136
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=62.22 E-value=5.3 Score=41.39 Aligned_cols=73 Identities=23% Similarity=0.107 Sum_probs=41.8
Q ss_pred ccccchHHHhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCC
Q 020961 200 ALLTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (319)
Q Consensus 200 g~l~YP~LQAADIl~~~adivpvG~DQ~-~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~ 278 (319)
|.-+=..-|+...|--.-||.-+|.|-. ||+| -++|..... +|.. .+...++. .++ ..
T Consensus 217 GWHIECsaMs~~~lg~~~DIH~GG~DliFPHHe--neiAqs~a~-~g~~--------------~~~~w~h~--g~l-~~- 275 (490)
T PRK14536 217 GWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHT--NEIAQCEAA-TGKP--------------WVRYWLHH--EFL-LM- 275 (490)
T ss_pred ChHHHHHHHHHHHcCCceeEEeccccCCCcchh--hHHHHHHHh-cCCC--------------cceEEEEc--CEE-ee-
Confidence 3333344556666655679999999965 6766 345544331 2321 13333331 222 33
Q ss_pred CCCCcCCCCCCCCCCeeec
Q 020961 279 DGLSKMSKSAPSDQSRINL 297 (319)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L 297 (319)
+| +|||||. +|.|.+
T Consensus 276 ~g-~KMSKSl---GN~itl 290 (490)
T PRK14536 276 NK-GKMSKSA---GQFLTL 290 (490)
T ss_pred cC-ccccccC---CCcccH
Confidence 56 7999998 688887
No 137
>PLN02381 valyl-tRNA synthetase
Probab=61.53 E-value=9.3 Score=43.24 Aligned_cols=45 Identities=29% Similarity=0.344 Sum_probs=30.4
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilIa-DlhA~ 122 (319)
++.|.+|. -+||.+|+||.+....+ +.+++. |+++.+..+ |-|.+
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Gl 179 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGI 179 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcC
Confidence 46777776 67899999999875522 444444 788877655 44444
No 138
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=61.13 E-value=5.2 Score=45.14 Aligned_cols=45 Identities=33% Similarity=0.369 Sum_probs=30.9
Q ss_pred CceEEEee-CCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~--~~~~lQ~--g~~~~ilIa-DlhA~ 122 (319)
++.|+.|. -+||.+|+||.++.+. -+.+++. |+++.+.-+ |-|.+
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Gl 99 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGI 99 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccch
Confidence 46777776 5789999999987552 2555554 888876554 55544
No 139
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=59.92 E-value=42 Score=28.18 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=46.8
Q ss_pred eeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEccc
Q 020961 84 GVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (319)
Q Consensus 84 Gi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd 159 (319)
-+.=||++..-|.+-+ |.+|.|-++++++-..==. .......+++.....+.+...|++|+++.+++=|-
T Consensus 33 rvpC~Grv~~~~il~A------f~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 33 RVPCSGRVDPEFILRA------FEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISA 103 (124)
T ss_pred EccCCCccCHHHHHHH------HHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc
Confidence 3444688887666433 5678888888766521110 11235677777778888889999999999887665
No 140
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.89 E-value=7.4 Score=42.77 Aligned_cols=63 Identities=24% Similarity=0.129 Sum_probs=34.6
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhh--CCccccccCCCCCccccCCcc-ccCCCCcccccCCCCCCcCCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQHLELTRELAERVNYLY--GGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLSKMSKSAPSD 291 (319)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdiA~r~n~~y--g~~~~~~~~~~~~~~~~~P~~-l~~~~~~~l~~L~dg~~KMSKS~p~~ 291 (319)
|=.|+-.+|.|+...+.|- -||+++. ....| ....|.. |++. .++.+- +| +|||||.
T Consensus 525 ~PVD~yigG~ehavlHLly----~rF~Hkal~d~g~~---------p~~epf~~L~~q--GmVl~~-~g-~KMSKSK--- 584 (814)
T COG0495 525 YPVDLYIGGIEHAVLHLLY----FRFFHKALFDEGLV---------PKDEPFKKLITQ--GMVLGE-EG-EKMSKSK--- 584 (814)
T ss_pred cChheeecchhHHHHHHHH----HHHHHHHhcccCcC---------CCccchhhhhcc--ceEEec-CC-Ccccccc---
Confidence 3489999999998765532 2344432 11111 1122322 4432 455553 45 6999998
Q ss_pred CCeeec
Q 020961 292 QSRINL 297 (319)
Q Consensus 292 ~s~I~L 297 (319)
+|.|.+
T Consensus 585 gN~v~p 590 (814)
T COG0495 585 GNVVDP 590 (814)
T ss_pred CCCCCH
Confidence 577754
No 141
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=58.79 E-value=6.9 Score=43.11 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=20.3
Q ss_pred cCCCEEEecCcc-hHHHHHHHHHHHHh
Q 020961 215 YQSDFVPVGEDQ-KQHLELTRELAERV 240 (319)
Q Consensus 215 ~~adivpvG~DQ-~~hieLaRdiA~r~ 240 (319)
+-+|+..+|.|| .-|+-.+|-....+
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~l 545 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKFL 545 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHHH
Confidence 459999999999 67777778865443
No 142
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=58.08 E-value=9.2 Score=42.03 Aligned_cols=46 Identities=24% Similarity=0.291 Sum_probs=31.3
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 020961 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilIa-DlhA~ 122 (319)
.++.++.|. -|+|.+|+||.+..+.+ +.+++. |+++.+..+ |-|.+
T Consensus 36 ~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 36 PEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 357888887 45699999999876533 445554 788766554 55544
No 143
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.57 E-value=58 Score=33.66 Aligned_cols=65 Identities=15% Similarity=0.307 Sum_probs=44.0
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc-cCcEEEEE--eccceecC-------CCC-HHHHHHHHHHHHHHHHHcCCCCCC
Q 020961 87 PTGSIHLGNYLGAI--KNWIALQN-SYETLFFI--VDLHAITL-------PYD-TQQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 87 PTG~lHLGhylg~l--~~~~~lQ~-g~~~~ilI--aDlhA~t~-------~~~-~~~l~~~~~~~~~~~lA~GlDp~k 151 (319)
+-..+||||....+ ..+.++|. ..+.+|+. .|-|.+-. ..+ ++....+..++...+.+.|+.-.+
T Consensus 50 vNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~ 127 (578)
T KOG0436|consen 50 VNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTK 127 (578)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhh
Confidence 55678999977655 45666787 33444444 68887632 224 466677778888889999997653
No 144
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=55.20 E-value=61 Score=28.26 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=33.0
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhccCc-EEEEEe-ccceecC--CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccc
Q 020961 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIV-DLHAITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (319)
Q Consensus 85 i~PTG~lHLGhylg~l~~~~~lQ~g~~-~~ilIa-DlhA~t~--~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~ 160 (319)
|+| +|+||... ++...+. ++ ++++|. +...... +.+.++-.+.++. .+...|+|-+++.++-..|.
T Consensus 8 FdP---~H~GHl~~-i~~a~~~---~d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~---~~~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 8 FQP---FHLGHLKV-IKWILEE---VDELIIGIGSAQESHTLENPFTAGERVLMIRR---ALEEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred cCC---CCHHHHHH-HHHHHHH---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHH---HHHhcCCCcCeEEEEecCCC
Confidence 466 99999854 3444322 34 555563 3333322 3343332222222 22333666778777666554
No 145
>PLN02660 pantoate--beta-alanine ligase
Probab=54.69 E-value=48 Score=32.10 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=25.1
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhh
Q 020961 216 QSDFVPVGEDQKQHLELTRELAERVN 241 (319)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdiA~r~n 241 (319)
++|....|+--.|-+.+.|.+.+.+|
T Consensus 146 ~P~~a~FGeKD~QQl~vIrrmV~dL~ 171 (284)
T PLN02660 146 EPDVAVFGKKDYQQWRVIRRMVRDLD 171 (284)
T ss_pred CCCEeeecchHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999988
No 146
>PLN02224 methionine-tRNA ligase
Probab=54.34 E-value=10 Score=40.46 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=34.5
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCe
Q 020961 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (319)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 294 (319)
...++..+|.|-.+++-+.= -|--+.. | ++.|..++.. ..+ .+ +| +|||||. ++.
T Consensus 320 w~~~v~~iGKDii~fH~i~w-pa~l~~~--g--------------~~~P~~i~~~--g~l-~~-eG-~KMSKS~---GN~ 374 (616)
T PLN02224 320 WPASLHLIGKDILRFHAVYW-PAMLMSA--G--------------LELPKMVFGH--GFL-TK-DG-MKMGKSL---GNT 374 (616)
T ss_pred CCcceEEEeecccccHHHHH-HHHHHHC--C--------------CCCCcEEEec--ccE-ec-CC-ccccccC---Ccc
Confidence 35688999999988543322 1111110 1 3457665542 233 33 66 8999998 688
Q ss_pred eecC
Q 020961 295 INLL 298 (319)
Q Consensus 295 I~L~ 298 (319)
|...
T Consensus 375 i~p~ 378 (616)
T PLN02224 375 LEPF 378 (616)
T ss_pred CCHH
Confidence 8654
No 147
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=53.80 E-value=8.1 Score=42.92 Aligned_cols=74 Identities=18% Similarity=0.316 Sum_probs=45.5
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------------CCCHHHHHHH----
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------------PYDTQQLSKA---- 134 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------------~~~~~~l~~~---- 134 (319)
++.+..|. -++|.+|+||.+..+.+ +.+++. |+++.+.. -|-|.+-. ..+++++++.
T Consensus 50 ~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~ 129 (912)
T PRK05743 50 KFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREY 129 (912)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHH
Confidence 45666665 56899999999876633 555555 78876654 45554421 1134443333
Q ss_pred ----HHHHHHHHHHcCC--CCCC
Q 020961 135 ----TRETAAIYLACGI--DNSK 151 (319)
Q Consensus 135 ----~~~~~~~~lA~Gl--Dp~k 151 (319)
...+..++..+|+ |.++
T Consensus 130 ~~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 130 ALEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHHHHHHHHhCCcccCCC
Confidence 2345667788898 7776
No 148
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=53.17 E-value=5.9 Score=39.02 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=25.9
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecccee
Q 020961 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHAI 122 (319)
Q Consensus 82 ~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~--~ilIaDlhA~ 122 (319)
|+.--|+|++|+||...++ .-..++-+ |++| ...|.||=..
T Consensus 26 ~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q 72 (354)
T PF00750_consen 26 FSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQ 72 (354)
T ss_dssp E---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHH
T ss_pred ecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHH
Confidence 7788899999999997765 33333333 7775 5688998543
No 149
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=51.95 E-value=70 Score=32.56 Aligned_cols=69 Identities=26% Similarity=0.263 Sum_probs=40.6
Q ss_pred hHHHhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 020961 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (319)
Q Consensus 205 P~LQAADIl~~~adivpvG~DQ~-~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~K 283 (319)
..-|+..+|--.-|+.-+|.|-. +|+|- ++|...-. +|+.. -+...++. . .... +| +|
T Consensus 230 Csam~~~~lg~~~Dih~GG~DLifpHhen--eiaq~~A~-~g~~~-------------~~~~w~H~--g-~l~~-~G-~K 288 (411)
T TIGR03447 230 CSAIATNRLGAGFDIQGGGSDLIFPHHEF--SAAHAEAA-TGVRR-------------MARHYVHA--G-MIGL-DG-EK 288 (411)
T ss_pred HHHHHHHHcCCceecccCcccccccchHh--HHHHHHHh-cCCCC-------------cceEEEEC--C-EECc-CC-CC
Confidence 45667777766789999999965 56553 44444321 23211 13333331 2 2233 56 89
Q ss_pred CCCCCCCCCCeeec
Q 020961 284 MSKSAPSDQSRINL 297 (319)
Q Consensus 284 MSKS~p~~~s~I~L 297 (319)
||||. +|.|.+
T Consensus 289 MSKSl---GN~i~~ 299 (411)
T TIGR03447 289 MSKSL---GNLVFV 299 (411)
T ss_pred ccCcC---CCCCCH
Confidence 99998 677766
No 150
>PLN02943 aminoacyl-tRNA ligase
Probab=51.28 E-value=18 Score=40.55 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=29.3
Q ss_pred CceEEEe-eCCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020961 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
++.+..| =-+||.+|+||.+....+ +.+++. |+++.+.. .|-|++
T Consensus 89 ~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 139 (958)
T PLN02943 89 PFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGI 139 (958)
T ss_pred CEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccc
Confidence 3566666 467999999999875522 334443 88887755 455544
No 151
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=51.12 E-value=11 Score=40.21 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=19.0
Q ss_pred ccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 020961 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (319)
Q Consensus 260 ~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 298 (319)
++.|..++.. ..+. + +| +|||||. +|.|...
T Consensus 311 ~~lP~~v~~h--g~v~-~-~G-~KMSKS~---GNvV~p~ 341 (673)
T PRK00133 311 YRLPTNVFAH--GFLT-V-EG-AKMSKSR---GTFIWAR 341 (673)
T ss_pred CCCCCEEeee--ccEE-e-cC-CcccccC---CcccCHH
Confidence 3456665542 3343 2 56 7999998 6777653
No 152
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=49.79 E-value=11 Score=41.21 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=20.1
Q ss_pred cCCCEEEecCcc-hHHHHHHHHHHHHh
Q 020961 215 YQSDFVPVGEDQ-KQHLELTRELAERV 240 (319)
Q Consensus 215 ~~adivpvG~DQ-~~hieLaRdiA~r~ 240 (319)
|-+|+...|.|| .-|+-.+|-....+
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~l 548 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKVL 548 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHHH
Confidence 459999999999 67888888665433
No 153
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=49.37 E-value=16 Score=42.06 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=19.8
Q ss_pred cccccchHHHhhhhh--ccCCCEEEecCcchHHH
Q 020961 199 VALLTYPVLMASDIL--LYQSDFVPVGEDQKQHL 230 (319)
Q Consensus 199 ~g~l~YP~LQAADIl--~~~adivpvG~DQ~~hi 230 (319)
.+.+-||--...+-+ .+-+|+..=|.||....
T Consensus 654 ~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgW 687 (1205)
T PTZ00427 654 YAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGW 687 (1205)
T ss_pred HHHhCCCcccchhhHhccCCceEEEEecchhccH
Confidence 455556642112322 35699999999998754
No 154
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=48.32 E-value=8.7 Score=42.80 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=26.2
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI 116 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI 116 (319)
++.+..|. -++|.+|+||.++.... +.++|. |+++.+..
T Consensus 26 kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~ 69 (938)
T TIGR00395 26 KFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPL 69 (938)
T ss_pred ceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCC
Confidence 45566665 56799999999875522 445555 78876644
No 155
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.77 E-value=27 Score=39.12 Aligned_cols=65 Identities=23% Similarity=0.257 Sum_probs=35.0
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020961 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 217 adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 296 (319)
+|+..=|.||..-.=.+--+..-.- +|+- +| -..|.+ .++..- +| +|||||. +|.|
T Consensus 556 aD~~lEGsDQ~RGWF~Ssl~~s~a~--~~~a-----------PY--k~vltH---GfvlDe-~G-rKMSKSl---GN~v- 611 (933)
T COG0060 556 ADFYLEGSDQTRGWFYSSLLTSTAL--FGRA-----------PY--KNVLTH---GFVLDE-KG-RKMSKSL---GNVV- 611 (933)
T ss_pred CcEEEEeccccchhHHHHHHHHHHH--cCCc-----------hH--HHHhhc---ccEECC-CC-CCccccC---CCcC-
Confidence 5999999999654332222221111 1210 11 123333 345443 45 8999998 6776
Q ss_pred cCCCHHHHHHhh
Q 020961 297 LLDPKDVSHKFF 308 (319)
Q Consensus 297 L~Dspe~I~kKI 308 (319)
+|.+|.+|.
T Consensus 612 ---~P~~V~~~y 620 (933)
T COG0060 612 ---DPQDVIDKY 620 (933)
T ss_pred ---CHHHHHHhh
Confidence 466666653
No 156
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=44.54 E-value=13 Score=38.61 Aligned_cols=66 Identities=20% Similarity=0.099 Sum_probs=37.3
Q ss_pred HhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCC
Q 020961 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (319)
Q Consensus 208 QAADIl~~~adivpvG~DQ~-~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSK 286 (319)
|+...|--.-||..+|.|-. ||+|-=+-.++-.. |.. .+...++. .++ -+ +| +||||
T Consensus 225 m~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~---g~~--------------~~~~W~H~--g~l-~~-~g-~KMSK 282 (481)
T PRK14534 225 MNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYL---NKK--------------WCDMFVHG--EFL-IM-EY-EKMSK 282 (481)
T ss_pred HHHHHcCCcceEEecccccCCCcchhHHHHHhhhc---CCC--------------cceEEEEe--cEE-Ee-cC-ceecc
Confidence 44444444579999999976 46664333333321 221 13333331 222 23 56 79999
Q ss_pred CCCCCCCeeecC
Q 020961 287 SAPSDQSRINLL 298 (319)
Q Consensus 287 S~p~~~s~I~L~ 298 (319)
|. +|.|.+.
T Consensus 283 Sl---GN~i~l~ 291 (481)
T PRK14534 283 SN---NNFITIK 291 (481)
T ss_pred cC---CCcccHH
Confidence 98 6888873
No 157
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=42.99 E-value=21 Score=40.02 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=30.9
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020961 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
.++.++.|. -+||.+|+||.+....+ +.+++. |+++.+.. -|-|.+
T Consensus 41 ~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~Gl 92 (975)
T PRK06039 41 PEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGL 92 (975)
T ss_pred CCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCcc
Confidence 357777777 67899999999875533 444443 78876654 355555
No 158
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=42.95 E-value=1.1e+02 Score=32.95 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=42.2
Q ss_pred CCCceEEEeeCCC--CcchhhhHHHHH--HHHHH-Hh--ccCcEEEEE--eccceec-C-----CCC-HHH-HHHHHHHH
Q 020961 76 SVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIA-LQ--NSYETLFFI--VDLHAIT-L-----PYD-TQQ-LSKATRET 138 (319)
Q Consensus 76 ~~~~~i~tGi~PT--G~lHLGhylg~l--~~~~~-lQ--~g~~~~ilI--aDlhA~t-~-----~~~-~~~-l~~~~~~~ 138 (319)
+..+++|+ ..|| +.+||||....+ .-+.+ |+ .|++|.++. .|.---+ . ..+ +.+ .+.+...+
T Consensus 58 ~~~v~~Y~-CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f 136 (651)
T PTZ00399 58 GRQVRWYT-CGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEF 136 (651)
T ss_pred CCeeEEEE-eCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 33444443 4566 779999976543 11222 34 278886653 2221111 1 124 433 45567788
Q ss_pred HHHHHHcCCCCCC
Q 020961 139 AAIYLACGIDNSK 151 (319)
Q Consensus 139 ~~~~lA~GlDp~k 151 (319)
.+++.++|+.+..
T Consensus 137 ~~d~~~Lni~~p~ 149 (651)
T PTZ00399 137 FEDMKALNVRPPD 149 (651)
T ss_pred HHHHHHcCCCCCc
Confidence 8999999997653
No 159
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=42.71 E-value=15 Score=41.03 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=30.4
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cccee
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilIa-DlhA~ 122 (319)
++.+..|. -++|.+|+||.+..+.+ +++++. |+++.+..+ |-|.+
T Consensus 55 ~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGl 105 (961)
T PRK13804 55 KFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGL 105 (961)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCc
Confidence 46666676 56899999999886633 445554 788765443 65655
No 160
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=42.64 E-value=97 Score=31.21 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=42.1
Q ss_pred CceEE-EeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecccee--cC-----CCCHHHH-HHHHHHHHHHHH
Q 020961 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAI--TL-----PYDTQQL-SKATRETAAIYL 143 (319)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~ilI-aDlhA~--t~-----~~~~~~l-~~~~~~~~~~~l 143 (319)
..++| +|-=|=+.+||||..+.+ .-+.++++ |++|.+.. .|.|.- +. ..+++++ +++...+.+++.
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~ 88 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDME 88 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34444 344444889999987755 22333333 78876643 333321 11 1255444 556678888999
Q ss_pred HcCC-CCC
Q 020961 144 ACGI-DNS 150 (319)
Q Consensus 144 A~Gl-Dp~ 150 (319)
++|+ .|+
T Consensus 89 ~Lni~~~~ 96 (384)
T PRK12418 89 ALRVLPPR 96 (384)
T ss_pred HhCCCCCC
Confidence 9997 554
No 161
>PLN02959 aminoacyl-tRNA ligase
Probab=41.41 E-value=14 Score=41.91 Aligned_cols=30 Identities=23% Similarity=0.250 Sum_probs=20.5
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE
Q 020961 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLFFI 116 (319)
Q Consensus 87 PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI 116 (319)
++|.+||||.+....+ ..++|. |+++.+..
T Consensus 56 ~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~ 89 (1084)
T PLN02959 56 MNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPF 89 (1084)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 4699999999876533 445555 67765543
No 162
>PLN02610 probable methionyl-tRNA synthetase
Probab=40.85 E-value=10 Score=41.59 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=19.8
Q ss_pred ccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 020961 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (319)
Q Consensus 260 ~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 298 (319)
++.|..++.. ..+ .+ +| +|||||. +|.|+..
T Consensus 330 ~~~p~~i~~~--g~l-~~-eG-~KMSKS~---GNvV~p~ 360 (801)
T PLN02610 330 WTMMKTISVT--EYL-NY-EG-GKFSKSK---GVGVFGN 360 (801)
T ss_pred cCCCCEEEec--cCE-ec-CC-ceecCcC---CcccCHH
Confidence 4567766642 223 22 67 7999998 6888754
No 163
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=39.70 E-value=5.6 Score=39.83 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=28.9
Q ss_pred EEEecCcchHHHHHHHHHHH-HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeec
Q 020961 219 FVPVGEDQKQHLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (319)
Q Consensus 219 ivpvG~DQ~~hieLaRdiA~-r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 297 (319)
+...|.|-.+++.+-=-..- -.+ ++.|..++.. ..+. + +| +|||||. ++.|..
T Consensus 285 v~~iGkDi~~fH~i~~pa~l~a~~------------------~~lP~~i~~~--~~~~-~-~g-~K~SkS~---gn~i~~ 338 (391)
T PF09334_consen 285 VHFIGKDIIRFHAIYWPAMLLAAG------------------LPLPRRIVVH--GFLT-L-DG-EKMSKSR---GNVIWP 338 (391)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHCT------------------B---SEEEEE----EE-E-TT-CCEETTT---TESSBH
T ss_pred EEEEccchhHHHHHHhHHHHhccc------------------CCCCCEEEee--eeEE-E-CC-eeccccC---CcccCH
Confidence 67788887766554321110 011 4567776642 2332 3 67 7999998 678865
Q ss_pred C
Q 020961 298 L 298 (319)
Q Consensus 298 ~ 298 (319)
.
T Consensus 339 ~ 339 (391)
T PF09334_consen 339 D 339 (391)
T ss_dssp H
T ss_pred H
Confidence 3
No 164
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=38.98 E-value=21 Score=41.06 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=30.2
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
++.++.|- -+||.+|+||.+..+.+ +.+++. |++|.+.. -|-|.+
T Consensus 103 ~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGl 153 (1205)
T PTZ00427 103 AYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGL 153 (1205)
T ss_pred cEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCc
Confidence 46667776 57899999999875532 444443 88886644 455655
No 165
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.24 E-value=15 Score=38.26 Aligned_cols=39 Identities=33% Similarity=0.189 Sum_probs=28.9
Q ss_pred cccccchHHHhhhhhccCCCEEEecCcch-HHHHHHHHHHHH
Q 020961 199 VALLTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAER 239 (319)
Q Consensus 199 ~g~l~YP~LQAADIl~~~adivpvG~DQ~-~hieLaRdiA~r 239 (319)
.|.=+=..-||+|||-.+-||--||.|=+ ||++ .|||+.
T Consensus 241 PGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHe--NEiAQ~ 280 (586)
T KOG2007|consen 241 PGWHIECSAMASAILGSQLDIHGGGIDLAFPHHE--NEIAQS 280 (586)
T ss_pred CCceeeeHHHHHHhhccccceecCcccccCCCcc--cHHHHH
Confidence 34445567899999999999999999976 5654 344443
No 166
>PLN02882 aminoacyl-tRNA ligase
Probab=34.78 E-value=27 Score=40.05 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=30.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
++.++.|- -+||.+|+||.+..+.+ +.+++. |++|.+.. -|-|.+
T Consensus 39 ~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGl 89 (1159)
T PLN02882 39 EYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGL 89 (1159)
T ss_pred CEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCc
Confidence 46777776 56899999999875533 444544 88886644 566665
No 167
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.52 E-value=39 Score=37.57 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=25.0
Q ss_pred CCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccceec
Q 020961 88 TGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAIT 123 (319)
Q Consensus 88 TG~lHLGhylg~l--~~~~~lQ~--g~~~~ilIaDlhA~t 123 (319)
||.+||||.++.. ....++++ |+++.+.-+=.||=+
T Consensus 87 TG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGI 126 (995)
T KOG0432|consen 87 TGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGI 126 (995)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccch
Confidence 8999999998754 22333333 777877777788765
No 168
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=29.02 E-value=19 Score=39.02 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=24.3
Q ss_pred cchHHHhhhhhccCCCEEEecCcch-HHHHHHHHHHHH
Q 020961 203 TYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAER 239 (319)
Q Consensus 203 ~YP~LQAADIl~~~adivpvG~DQ~-~hieLaRdiA~r 239 (319)
+=..-|+...|--.-||--||+|-. ||+|= |+|..
T Consensus 433 IECSAMs~~~LG~~~DIHgGG~DLiFPHHEN--EiAQs 468 (699)
T PRK14535 433 IECSAMSENLFGDTFDIHGGGADLQFPHHEN--EIAQS 468 (699)
T ss_pred HHHHHHHHHHcCCcceeECCccccCCCCCcc--HHHHH
Confidence 3345666666666789999999964 78774 55554
No 169
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=28.32 E-value=2.4e+02 Score=24.91 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=16.9
Q ss_pred EEEe-eCCCCcchhhhHHHHHHHHHHHhccCc-EEEEEe
Q 020961 81 IVSG-VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIV 117 (319)
Q Consensus 81 i~tG-i~PTG~lHLGhylg~l~~~~~lQ~g~~-~~ilIa 117 (319)
+|.| |+| +|+||... ++... +.++ ++++|+
T Consensus 4 l~~G~F~P---~H~GHl~~-i~~a~---~~~d~v~v~i~ 35 (174)
T PRK01153 4 LFIGRFQP---FHKGHLEV-IKWIL---EEVDELIIGIG 35 (174)
T ss_pred EEeeccCC---CCHHHHHH-HHHHH---HhCCEEEEEec
Confidence 3444 566 99999854 33332 2455 455564
No 170
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.91 E-value=21 Score=39.65 Aligned_cols=14 Identities=50% Similarity=0.622 Sum_probs=10.9
Q ss_pred CCCCcCCCCCCCCCCeee
Q 020961 279 DGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 279 dg~~KMSKS~p~~~s~I~ 296 (319)
+| +|||||. +|-|.
T Consensus 522 ~G-~KMSKS~---GNvID 535 (877)
T COG0525 522 QG-RKMSKSK---GNVID 535 (877)
T ss_pred CC-CCCcccC---CCcCC
Confidence 56 8999998 67763
No 171
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=27.79 E-value=2.2e+02 Score=24.41 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=54.7
Q ss_pred eeccCCCCCCCCCCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEE----EeccceecCCCCHHHHHHHH
Q 020961 60 CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFF----IVDLHAITLPYDTQQLSKAT 135 (319)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~il----IaDlhA~t~~~~~~~l~~~~ 135 (319)
|+-.+++.+.-.--+-|...||. -+.=||++.--. + +..|++|.|-++. ++|-|=..++. +.+++.
T Consensus 11 csygaaDlag~~rmqyp~~vRiI-rv~CsGrvn~~f----v--l~Al~~GaDGV~v~GC~~geCHy~~GN~---ka~rR~ 80 (132)
T COG1908 11 CSYGAADLAGTSRMQYPPNVRII-RVMCSGRVNPEF----V--LKALRKGADGVLVAGCKIGECHYISGNY---KAKRRM 80 (132)
T ss_pred ccccchhhhccccccCCCceEEE-EeeccCccCHHH----H--HHHHHcCCCeEEEecccccceeeeccch---HHHHHH
Confidence 44455555554444444444443 344577765322 2 2337888886554 46766665544 345555
Q ss_pred HHHHHHHHHcCCCCCCcEEEEccc
Q 020961 136 RETAAIYLACGIDNSKASVFVQSH 159 (319)
Q Consensus 136 ~~~~~~~lA~GlDp~k~~if~QSd 159 (319)
+...+.+..+||+|+++.++|=|.
T Consensus 81 ~~lke~l~elgie~eRv~~~wiSa 104 (132)
T COG1908 81 ELLKELLKELGIEPERVRVLWISA 104 (132)
T ss_pred HHHHHHHHHhCCCcceEEEEEEeh
Confidence 566666778899999999888765
No 172
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=27.68 E-value=2.1e+02 Score=27.99 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=20.2
Q ss_pred CceEEEe-eCCCCcchhhhHHHHHHHHHHHhccCcEEEEEe
Q 020961 78 KKRIVSG-VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIV 117 (319)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIa 117 (319)
..-+|.| |+| +|+||... ++...+ ..-+++|.++
T Consensus 7 ~~~~~~G~F~P---~H~GHl~~-i~~a~~--~~d~l~v~i~ 41 (340)
T PRK05379 7 DYLVFIGRFQP---FHNGHLAV-IREALS--RAKKVIVLIG 41 (340)
T ss_pred eEEEEeeccCC---CCHHHHHH-HHHHHH--HCCEEEEEEc
Confidence 3445666 577 89999864 334322 2224777775
No 173
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=26.36 E-value=2.6e+02 Score=27.06 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhh
Q 020961 216 QSDFVPVGEDQKQHLELTRELAERVN 241 (319)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdiA~r~n 241 (319)
++|....|+--.|-+.+.|.+.+.+|
T Consensus 143 ~P~~a~FGeKD~QQl~vIrrmv~dL~ 168 (282)
T TIGR00018 143 QPDVAYFGEKDAQQLAVIRKLVADLF 168 (282)
T ss_pred CCCeeEecccHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999998
No 174
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=24.77 E-value=4.7e+02 Score=25.62 Aligned_cols=70 Identities=26% Similarity=0.134 Sum_probs=39.6
Q ss_pred hHHHhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCc
Q 020961 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (319)
Q Consensus 205 P~LQAADIl~~~adivpvG~DQ~-~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~K 283 (319)
..-|+...|-..-||--+|.|-. ||+|=-+-.++-.. |+.. - -.-+++ .+|. + +| +|
T Consensus 195 Csam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~---g~~~-a------------~~W~H~---g~l~-~-~g-~K 252 (300)
T PF01406_consen 195 CSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT---GKPF-A------------NYWMHN---GHLN-V-DG-EK 252 (300)
T ss_dssp HHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH---SS-S-E------------EEEEEE-----EE-E-TT-CE
T ss_pred hHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh---CchH-H------------HHHHHH---HHHh-h-cC-cc
Confidence 35677788888899999999975 78886555555443 3210 0 011333 2232 2 56 89
Q ss_pred CCCCCCCCCCeeecCC
Q 020961 284 MSKSAPSDQSRINLLD 299 (319)
Q Consensus 284 MSKS~p~~~s~I~L~D 299 (319)
||||. +|.|.+.|
T Consensus 253 MSKSl---gN~~~i~d 265 (300)
T PF01406_consen 253 MSKSL---GNFITIRD 265 (300)
T ss_dssp --TTT---T---BHHH
T ss_pred ccccC---CCEEEHHH
Confidence 99998 68888765
No 175
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.02 E-value=53 Score=32.73 Aligned_cols=27 Identities=41% Similarity=0.696 Sum_probs=19.7
Q ss_pred CCcchhhhHHHHHHHHHHHhccCcEEEEEeccc
Q 020961 88 TGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120 (319)
Q Consensus 88 TG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlh 120 (319)
.|..||||| |+.++- ...|+|-|+|+.
T Consensus 62 cGD~HLgN~-ga~~~~-----~G~V~f~i~DFD 88 (410)
T COG4320 62 CGDAHLGNF-GAARNS-----KGNVVFKIADFD 88 (410)
T ss_pred ecccccccc-hhhccC-----CCceEEEecccc
Confidence 467999998 543222 467999999974
No 176
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.63 E-value=31 Score=36.46 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=18.4
Q ss_pred CCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 020961 262 VPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (319)
Q Consensus 262 ~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 299 (319)
.|..++.. ..+ -+ +| +|||||. ++.|+..|
T Consensus 317 lP~~i~ah--g~l-~~-~G-~KmSKSr---G~~V~~~~ 346 (558)
T COG0143 317 LPTRIFAH--GFL-TL-EG-QKMSKSR---GNVVDPDE 346 (558)
T ss_pred CCCEEEee--eeE-EE-CC-ccccccC---CcEEeHHH
Confidence 56665542 122 22 56 6999998 68887544
No 177
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=23.26 E-value=3.8e+02 Score=21.52 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=15.8
Q ss_pred cchhhhHHHHHHHHHHHhccCc-EEEEEeccceec
Q 020961 90 SIHLGNYLGAIKNWIALQNSYE-TLFFIVDLHAIT 123 (319)
Q Consensus 90 ~lHLGhylg~l~~~~~lQ~g~~-~~ilIaDlhA~t 123 (319)
++|.||.-. +....++-+ .+ ++++.+|-...-
T Consensus 8 P~H~GH~~~-l~~a~~~~~-~~~vi~v~~~~~~~k 40 (157)
T PF01467_consen 8 PPHNGHLNL-LREARELFD-EDLVIVVPSDNSPHK 40 (157)
T ss_dssp T--HHHHHH-HHHHHHHSS-ESEEEEEEEEHHCHS
T ss_pred cccHHHHHH-HHHHHHhcc-ccccccccccccccc
Confidence 399999864 444433222 22 555666665543
Done!